Query 041023
Match_columns 303
No_of_seqs 243 out of 1421
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 04:24:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041023.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041023hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n3w_A Ribonuclease III; nucle 100.0 2E-51 6.9E-56 369.0 11.4 215 63-298 23-248 (248)
2 2nug_A Ribonuclease III, RNAse 100.0 5.3E-49 1.8E-53 348.0 20.6 203 68-296 4-218 (221)
3 3c4b_A Endoribonuclease dicer; 100.0 4.7E-49 1.6E-53 357.3 19.6 229 67-297 14-263 (265)
4 1o0w_A Ribonuclease III, RNAse 100.0 1.1E-48 3.7E-53 352.4 13.9 211 67-297 20-249 (252)
5 2a11_A Ribonuclease III, RNAse 100.0 4.3E-48 1.5E-52 346.6 8.0 212 66-298 5-232 (242)
6 3rv0_A K. polysporus DCR1; RNA 100.0 2.3E-47 8E-52 355.7 12.1 218 62-298 79-321 (341)
7 3o2r_A Ribonuclease III; struc 100.0 1.4E-37 4.8E-42 263.5 12.0 147 62-228 22-169 (170)
8 3rv1_A K. polysporus DCR1; RNA 100.0 1.4E-35 4.8E-40 263.9 12.7 150 63-228 80-242 (246)
9 2qvw_A GLP_546_48378_50642; di 100.0 1.7E-29 5.7E-34 256.4 12.4 132 68-229 595-755 (756)
10 2qvw_A GLP_546_48378_50642; di 100.0 3.7E-30 1.3E-34 261.2 4.4 165 85-298 320-498 (756)
11 1u61_A Hypothetical protein; s 99.9 8.4E-22 2.9E-26 160.1 11.5 107 97-223 9-127 (138)
12 2gsl_A Hypothetical protein; a 99.8 5.7E-20 2E-24 149.0 8.9 110 97-227 12-131 (137)
13 3adl_A RISC-loading complex su 99.5 7E-14 2.4E-18 105.2 8.8 68 231-300 13-87 (88)
14 1di2_A XLRBPA, double stranded 99.5 8.2E-14 2.8E-18 100.1 7.8 61 235-297 2-69 (69)
15 3adg_A F21M12.9 protein; HYL1, 99.5 5.3E-14 1.8E-18 102.2 6.4 63 233-296 3-72 (73)
16 3adj_A F21M12.9 protein; HYL1, 99.5 4.2E-14 1.5E-18 103.6 5.9 64 233-297 4-74 (76)
17 1x47_A DGCR8 protein; structur 99.4 1.9E-13 6.4E-18 104.9 8.0 67 232-299 15-86 (98)
18 2cpn_A TAR RNA-binding protein 99.4 2.1E-13 7.2E-18 102.8 8.0 65 232-298 15-86 (89)
19 1ekz_A DSRBDIII, maternal effe 99.4 7.9E-14 2.7E-18 102.1 5.3 65 231-298 5-76 (76)
20 2khx_A Ribonuclease 3; drosha, 99.4 7.1E-14 2.4E-18 104.5 5.1 64 233-297 1-76 (85)
21 1uhz_A Staufen (RNA binding pr 99.4 3.7E-13 1.3E-17 101.5 8.4 64 232-297 5-75 (89)
22 2dix_A Interferon-inducible do 99.4 4.2E-13 1.4E-17 100.1 8.3 64 232-298 7-77 (84)
23 3llh_A RISC-loading complex su 99.4 5.7E-13 1.9E-17 100.7 8.4 65 231-298 12-83 (90)
24 1t4n_A Ribonuclease III; DSRBD 99.4 1.6E-13 5.6E-18 103.7 4.9 65 232-298 5-76 (94)
25 1t4o_A Ribonuclease III; RNT1P 99.4 3.1E-13 1.1E-17 105.8 6.6 65 232-298 7-78 (117)
26 1x48_A Interferon-induced, dou 99.4 9.2E-13 3.1E-17 99.1 8.6 68 232-300 5-77 (88)
27 2l2n_A Hyponastic leave 1; DSR 99.4 7E-13 2.4E-17 102.6 7.6 67 231-298 15-88 (103)
28 1whq_A RNA helicase A; double- 99.4 8.9E-13 3E-17 101.3 6.9 65 232-298 5-76 (99)
29 1x49_A Interferon-induced, dou 99.3 5.5E-13 1.9E-17 102.1 4.8 66 231-298 12-84 (97)
30 1whn_A Hypothetical protein ri 99.3 1.2E-12 4.1E-17 105.0 5.8 65 232-297 25-94 (128)
31 2b7t_A Double-stranded RNA-spe 99.3 5.4E-12 1.8E-16 91.5 7.4 62 232-297 3-71 (73)
32 1uil_A Double-stranded RNA-bin 99.3 4.7E-12 1.6E-16 99.5 5.6 65 232-298 25-100 (113)
33 2dmy_A Spermatid perinuclear R 99.3 1.6E-11 5.6E-16 93.9 8.5 63 231-297 14-83 (97)
34 2l33_A Interleukin enhancer-bi 99.3 1.8E-11 6.1E-16 92.4 8.5 67 231-301 12-85 (91)
35 2ljh_A Double-stranded RNA-spe 99.1 4.6E-11 1.6E-15 93.7 5.9 60 232-298 36-102 (114)
36 2yt4_A Protein DGCR8; DSRBD, R 99.1 1.6E-10 5.5E-15 102.0 8.8 67 232-299 21-92 (232)
37 2b7v_A Double-stranded RNA-spe 99.1 2.3E-10 7.9E-15 82.4 7.1 60 232-298 3-69 (71)
38 1qu6_A Protein kinase PKR; dsR 99.1 1.5E-10 5.2E-15 98.3 6.3 65 232-298 12-83 (179)
39 3p1x_A Interleukin enhancer-bi 99.0 1.8E-09 6.1E-14 78.5 7.9 63 234-300 5-74 (75)
40 1qu6_A Protein kinase PKR; dsR 98.7 1.3E-08 4.4E-13 86.3 6.6 65 232-297 103-172 (179)
41 2l3j_A Double-stranded RNA-spe 98.6 1.1E-07 3.9E-12 83.9 7.6 60 232-298 160-226 (236)
42 2yt4_A Protein DGCR8; DSRBD, R 98.5 1.2E-07 4.1E-12 83.6 5.6 63 232-299 129-200 (232)
43 2l3j_A Double-stranded RNA-spe 98.4 4.9E-07 1.7E-11 79.8 8.1 63 232-298 3-72 (236)
44 2db2_A KIAA0890 protein; DSRM 93.0 0.25 8.7E-06 37.6 6.3 66 232-298 16-90 (119)
45 1ztd_A Hypothetical protein PF 91.9 1 3.5E-05 34.2 8.4 89 99-224 11-101 (133)
46 2kou_A Dicer-like protein 4; A 85.2 2.3 7.9E-05 31.9 6.4 62 234-298 5-81 (102)
47 3htx_A HEN1; HEN1, small RNA m 56.3 4.5 0.00016 41.7 2.1 38 259-297 58-95 (950)
48 3bid_A UPF0339 protein NMB1088 45.3 34 0.0012 23.2 4.5 40 255-299 8-48 (64)
49 1ytb_A Protein (tata binding p 33.5 62 0.0021 26.5 5.2 44 252-298 43-86 (180)
50 1rm1_A Tata-box binding protei 31.3 1E+02 0.0035 26.5 6.4 44 252-298 103-146 (240)
51 3eik_A Tata-box-binding protei 29.2 77 0.0026 26.9 5.2 44 252-298 81-124 (218)
52 2dae_A KIAA0733 protein; mitog 27.7 27 0.00091 24.3 1.6 48 111-158 9-56 (75)
53 2z8u_A Tata-box-binding protei 27.7 87 0.003 25.8 5.2 43 253-298 52-94 (188)
54 1ais_A TBP, protein (tata-bind 24.7 1E+02 0.0035 25.2 5.0 44 252-298 47-90 (182)
55 1p3q_Q VPS9P, vacuolar protein 23.0 60 0.002 21.2 2.6 19 284-302 8-26 (54)
56 3iwf_A Transcription regulator 23.0 47 0.0016 24.6 2.4 43 113-157 20-65 (107)
57 1mp9_A Tata-binding protein; t 22.6 93 0.0032 25.9 4.4 44 252-298 51-94 (198)
No 1
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=100.00 E-value=2e-51 Score=369.01 Aligned_cols=215 Identities=28% Similarity=0.412 Sum_probs=131.0
Q ss_pred CCcCCccH-HHhcCCccCCHHHHHHhhcCCCCCCCCCChhHHHHhhHHHHHHHHHHHHHHhCCCCChhchHHHHHhhcCh
Q 041023 63 PNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141 (303)
Q Consensus 63 ~~~~~l~~-e~~lgy~F~~~~LL~~AlTh~S~~~~~~~~erLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~lr~~lvsn 141 (303)
|....+.. |++|||+|+|++||.+||||+||... .+|||||||||+||+++|+++||.+||+.++|.|+.+|+.+|||
T Consensus 23 ~~~~~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~-~~neRLefLGDavL~~~v~~~L~~~~p~~~eg~Ls~~r~~lVs~ 101 (248)
T 3n3w_A 23 NAMKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKS-YNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNE 101 (248)
T ss_dssp --CTTHHHHHHHHTCCCSSHHHHHHHTBCTTSBTT-BCSHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHSH
T ss_pred ccHHHHHHHHHHHCCCCCCHHHHHHHhcCcCCCCC-CCcHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCH
Confidence 34445888 99999999999999999999999863 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCchhhhhcCCcchHHHHHHHHHHhhcCCCCCCCCCCCchhHHHHHHHHhhhhcccCCCCHHHHHHHHHHh
Q 041023 142 EKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKEL 221 (303)
Q Consensus 142 ~~La~~a~~~gL~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~k~laD~fEAliGAIylD~G~~~~~v~~~i~~l 221 (303)
++|+.+|.++||+++|+.++++.. .+....++++||+|||+|||||+|+|+ +.+++|+.++
T Consensus 102 ~~La~~a~~lgL~~~l~~~~~e~~-----------------~~g~~~~~~lad~fEAliGAiyld~G~--~~~~~~i~~~ 162 (248)
T 3n3w_A 102 KSFAKIANSLNLGDFILMSVAEEN-----------------NGGKEKPSILSDALEAIIGAIHLEAGF--EFAKTIALRL 162 (248)
T ss_dssp HHHHHHHHHTTGGGTCBCCHHHHH-----------------TTGGGCHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHhhcCchhhh-----------------cCCCCCccHHHHHHHHHHHHHHHHCCh--HHHHHHHHHH
Confidence 999999999999999998765311 234567899999999999999999997 8999999999
Q ss_pred hcccCCCCc---ccCCCccHHHHHHHhCCCcceEEEee-------cceeEEEEEECCEEEEEEEeccchHHHHHHHHHHH
Q 041023 222 LKPMISPET---LKTHPVTELYEVCQKNKLKVKFVDLW-------KESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDA 291 (303)
Q Consensus 222 l~~~l~~~~---~~~~Pk~~Lqe~~q~~~~~~~~~~~~-------~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~A 291 (303)
+.|.++... ...|||+.||||||+++...|.|++. .+.|+|+|+++|+.+|+|.|.|||+ ||++||+.|
T Consensus 163 ~~~~l~~~~~~~~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~-Aeq~AA~~A 241 (248)
T 3n3w_A 163 IEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKE-AQQMAAKIA 241 (248)
T ss_dssp HHHHCC--------------------------------------------------------------------------
T ss_pred HHHHHHHhhccccccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHH-HHHHHHHHH
Confidence 999876532 35799999999999999888877653 2468999999999999999999996 999999999
Q ss_pred HHHHHhh
Q 041023 292 LNNIERL 298 (303)
Q Consensus 292 L~~l~~~ 298 (303)
|+.|+.+
T Consensus 242 L~~L~~l 248 (248)
T 3n3w_A 242 LEKLGAL 248 (248)
T ss_dssp -------
T ss_pred HHHHHcC
Confidence 9998764
No 2
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=100.00 E-value=5.3e-49 Score=347.96 Aligned_cols=203 Identities=30% Similarity=0.402 Sum_probs=182.5
Q ss_pred ccH-HHhcCCccCCHHHHHHhhcCCCCCCCCCChhHHHHhhHHHHHHHHHHHHHHhCCCCChhchHHHHHhhcChHHHHH
Q 041023 68 LDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLAR 146 (303)
Q Consensus 68 l~~-e~~lgy~F~~~~LL~~AlTh~S~~~~~~~~erLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~lr~~lvsn~~La~ 146 (303)
+.. |++|||+|+|++||.+||||+||.. ..+|||||||||+||++++++|||.+||+.++|.|+.+|+.+||+.+|+.
T Consensus 4 ~~~l~~~lg~~f~~~~ll~~AlTh~S~~~-~~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~la~ 82 (221)
T 2nug_A 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSK-KEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNL 82 (221)
T ss_dssp HHHHHHHHTCCCSSHHHHHHHHBCTTTCS-SSCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHhCCCcCCHHHHHHHhCCCCCCC-CCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHHHHH
Confidence 556 9999999999999999999999976 36999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCchhhhhcCCcchHHHHHHHHHHhhcCCCCCCCCCCCchhHHHHHHHHhhhhcccCCCCHHHHHHHHHHhhcccC
Q 041023 147 VAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI 226 (303)
Q Consensus 147 ~a~~~gL~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~k~laD~fEAliGAIylD~G~~~~~v~~~i~~ll~~~l 226 (303)
+|.++||+++++.+++. ..+++++|+|||+|||||+|+|++.+.+++|+.+++.|.+
T Consensus 83 ~a~~l~l~~~l~~~~~~-----------------------~~~~~lad~~EAliGAiyld~g~~~~~~~~~i~~~~~~~~ 139 (221)
T 2nug_A 83 LAQKLELHKFIRIKRGK-----------------------INETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDI 139 (221)
T ss_dssp HHHTTTGGGTCBSCTTC-----------------------CCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcChHHhhccCCCc-----------------------ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999987653 1289999999999999999999965559999999998876
Q ss_pred C-C---CcccCCCccHHHHHHHhCCCcceEEEee-------cceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHH
Q 041023 227 S-P---ETLKTHPVTELYEVCQKNKLKVKFVDLW-------KESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295 (303)
Q Consensus 227 ~-~---~~~~~~Pk~~Lqe~~q~~~~~~~~~~~~-------~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l 295 (303)
+ . .....|||+.||||||+++...|.|++. .+.|+|+|+++|+ +|.|.|.|+|+ ||+.||+.||+.|
T Consensus 140 ~~~~~~~~~~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~G~skK~-Ae~~AA~~AL~~L 217 (221)
T 2nug_A 140 LSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKE-AEQRAAEELIKLL 217 (221)
T ss_dssp HHHHHTTCSCCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHH-HHHHHHHHHHHHH
T ss_pred hhhhhccccccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEEecCCHHH-HHHHHHHHHHHHh
Confidence 5 3 1235799999999999998887766543 3569999999999 99999999996 9999999999998
Q ss_pred H
Q 041023 296 E 296 (303)
Q Consensus 296 ~ 296 (303)
+
T Consensus 218 ~ 218 (221)
T 2nug_A 218 E 218 (221)
T ss_dssp C
T ss_pred h
Confidence 6
No 3
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=100.00 E-value=4.7e-49 Score=357.27 Aligned_cols=229 Identities=28% Similarity=0.433 Sum_probs=187.6
Q ss_pred CccH-HHhcCCccCCHHHHHHhhcCCCCCCC--CCChhHHHHhhHHHHHHHHHHHHHHhCCCCChhchHHHHHhhcChHH
Q 041023 67 NLDE-EEILGYRFNNKNLLEEAFTDPSCPER--FFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEK 143 (303)
Q Consensus 67 ~l~~-e~~lgy~F~~~~LL~~AlTh~S~~~~--~~~~erLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~lr~~lvsn~~ 143 (303)
.+.. |++|||+|+|++||.+||||+||... ..+|||||||||+||+++|++|||.+||++++|.||.+|+.+|||.+
T Consensus 14 ~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~~neRLEfLGDaVL~l~v~~~L~~~~p~~~~g~Lt~lrs~lV~~~~ 93 (265)
T 3c4b_A 14 GFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTI 93 (265)
T ss_dssp THHHHHHHHTCCCSSHHHHHHHHBCTTCTTCCSSCCSHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHSSHHH
T ss_pred HHHHHHHHhCCccCCHHHHHHHhcCcCcCCCCCCCchHhHHHHhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhHH
Confidence 4677 99999999999999999999999742 46999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCchhhhhcCCcchHHHHHHHHHHh-hc---CC-----------CCCCCCCCCchhHHHHHHHHhhhhcccCC
Q 041023 144 LARVAIKLGLHKYLRHNKPLLEEQIREFSEAI-LD---YP-----------LHSNGLVDAPKVLADIVESTIGAVFIDCN 208 (303)
Q Consensus 144 La~~a~~~gL~~~i~~~~~~~~~~i~~~~~~~-~~---~~-----------~~~~~~~~~~k~laD~fEAliGAIylD~G 208 (303)
||.+|.++||++++++.++.+...+.+|.... .. .. ....+....++++||+|||+|||||+|+|
T Consensus 94 La~~a~~lgl~~~l~~~~~~l~~~i~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~laD~~EAliGAiylD~G 173 (265)
T 3c4b_A 94 FASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSG 173 (265)
T ss_dssp HHHHHHHTTGGGTCBCCCHHHHHHHHHHHHHHHHHHC------------------CCSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcChHHHHHhcChhHHHHHHHHHHHHhhhhhhcchhHHhhhcchhhhhhcccccchHHHHHHHHHhhheeeecC
Confidence 99999999999999988776666666665421 00 00 01123456799999999999999999999
Q ss_pred CCHHHHHHHHHHhhcccCCCCcccCCCccHHHHHHHhCCCc---ceEEEeecceeEEEEEECCEEEEEEEeccchHHHHH
Q 041023 209 SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLK---VKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHN 285 (303)
Q Consensus 209 ~~~~~v~~~i~~ll~~~l~~~~~~~~Pk~~Lqe~~q~~~~~---~~~~~~~~~~~~v~V~i~~~~ig~G~g~skk~~Ae~ 285 (303)
+|++.+++|+.+++.|.++... ..+||+.|+++.+..... .+.+..+.+.|+|+|+++|+.+|+|.|.|+|+ ||+
T Consensus 174 ~~~~~~~~~i~~~~~~~i~~~~-~~~~k~~l~el~~~~~~~~~~~~~~~~~~~~f~v~v~v~~~~~~~G~G~SkK~-Aeq 251 (265)
T 3c4b_A 174 MSLEVVWQVYYPMMQPLIEKFS-ANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRI-AKS 251 (265)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH-HHSCCCHHHHHHHHCTTTEEECCCEECTTSCEEEEEEETTTEEEEEEESSHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHHHhHh-hcCCCCHHHHHHHhccCCceeeeccccCCCcEEEEEEEecceEEEEeeCCHHH-HHH
Confidence 9999999999999988865321 135666666665554321 12334456789999999999999999999996 999
Q ss_pred HHHHHHHHHHHh
Q 041023 286 RAAKDALNNIER 297 (303)
Q Consensus 286 ~AA~~AL~~l~~ 297 (303)
+||+.||++|+.
T Consensus 252 ~AA~~AL~~l~~ 263 (265)
T 3c4b_A 252 AAARRALRSLKA 263 (265)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999999863
No 4
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=100.00 E-value=1.1e-48 Score=352.36 Aligned_cols=211 Identities=27% Similarity=0.341 Sum_probs=185.0
Q ss_pred CccH-HHhcCCccCCHHHHHHhhcCCCCCCC---CC-----ChhHHHHhhHHHHHHHHHHHHHHhCCCCChhchHHHHHh
Q 041023 67 NLDE-EEILGYRFNNKNLLEEAFTDPSCPER---FF-----SYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSA 137 (303)
Q Consensus 67 ~l~~-e~~lgy~F~~~~LL~~AlTh~S~~~~---~~-----~~erLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~lr~~ 137 (303)
.+.. |++|||+|+|++||.+||||+||... .. +|||||||||+||+++|++|||.+||+.++|.|+.+|+.
T Consensus 20 ~~~~l~~~lgy~f~~~~LL~~AlTH~S~~~~~~~~~~~~~~~nerLefLGDavL~l~v~~~L~~~~p~~~eg~Ls~~r~~ 99 (252)
T 1o0w_A 20 IVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVKSA 99 (252)
T ss_dssp HHHHHHHHHCCCCSSHHHHHHHHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHhCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4566 99999999999999999999998531 23 899999999999999999999999999999999999999
Q ss_pred hcChHHHHHHHHHcCchhhhhcCCcchHHHHHHHHHHhhcCCCCCCCCCCCchhHHHHHHHHhhhhcccCCCCHHHHHHH
Q 041023 138 NVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKV 217 (303)
Q Consensus 138 lvsn~~La~~a~~~gL~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~k~laD~fEAliGAIylD~G~~~~~v~~~ 217 (303)
+||+.+|+.+|.++||+++++.++++.. .+....++++||+|||+|||||+|+|+ +.+++|
T Consensus 100 lV~~~~la~~a~~lgL~~~l~~~~~e~~-----------------~~~~~~~~~lad~~EAliGAiyld~g~--~~~~~~ 160 (252)
T 1o0w_A 100 AASEEVLAMVSRKMNLGKFLFLGKGEEK-----------------TGGRDRDSILADAFEALLAAIYLDQGY--EKIKEL 160 (252)
T ss_dssp HTSHHHHHHHHHHTTHHHHCBCCHHHHH-----------------TTGGGCHHHHHHHHHHHHHHHHHHHCH--HHHHHH
T ss_pred HhCHHHHHHHHHHcCcHHhhccCchhhh-----------------cCCCCCccHHHhHHHHHHHHHHHcCCH--HHHHHH
Confidence 9999999999999999999998764310 233567899999999999999999997 899999
Q ss_pred HHHhhcccCCC---CcccCCCccHHHHHHHhCCCcceEEEee-------cceeEEEEEECCEEEEEEEeccchHHHHHHH
Q 041023 218 FKELLKPMISP---ETLKTHPVTELYEVCQKNKLKVKFVDLW-------KESTAFHIFIEDQLLGRGAYAPKKEIAHNRA 287 (303)
Q Consensus 218 i~~ll~~~l~~---~~~~~~Pk~~Lqe~~q~~~~~~~~~~~~-------~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~A 287 (303)
+..++.|.+.. .....|||+.||||||+.+...|.|++. .+.|+|+|+++|+.+|+|.|.|+|+ ||++|
T Consensus 161 i~~~~~~~~~~~~~~~~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~-Aeq~A 239 (252)
T 1o0w_A 161 FEQEFEFYIEKIMKGEMLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKE-AEKEA 239 (252)
T ss_dssp HHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHH-HHHHH
T ss_pred HHHHHHHHHHHhhhcccccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHHH-HHHHH
Confidence 99999887653 2245799999999999998877766653 2468999999999999999999996 99999
Q ss_pred HHHHHHHHHh
Q 041023 288 AKDALNNIER 297 (303)
Q Consensus 288 A~~AL~~l~~ 297 (303)
|+.||+.|..
T Consensus 240 A~~AL~~L~~ 249 (252)
T 1o0w_A 240 ARIAYEKLLK 249 (252)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 5
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4.3e-48 Score=346.62 Aligned_cols=212 Identities=29% Similarity=0.364 Sum_probs=128.0
Q ss_pred CCccH-HHhcCCccCCHHHHHHhhcCCCCCC---CCCChhHHHHhhHHHHHHHHHHHHHHhCCCCChhchHHHHHhhcCh
Q 041023 66 NNLDE-EEILGYRFNNKNLLEEAFTDPSCPE---RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141 (303)
Q Consensus 66 ~~l~~-e~~lgy~F~~~~LL~~AlTh~S~~~---~~~~~erLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~lr~~lvsn 141 (303)
..+.. |++|||+| |++||.+||||+||.. ...+|||||||||+||++++++|||.+||+.++|.|+.+|+.+|||
T Consensus 5 ~~l~~l~~~lgy~f-~~~ll~~AlTH~S~~~~~~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~ 83 (242)
T 2a11_A 5 RSRQPLLDALGVDL-PDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNT 83 (242)
T ss_dssp CCCHHHHHHHTSCC-CHHHHHHHTBCHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHhCCcCccccCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCH
Confidence 45677 99999999 9999999999999852 3469999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc---CchhhhhcCCcchHHHHHHHHHHhhcCCCCCCCCCCCchhHHHHHHHHhhhhcccCCCCHHHHHHHH
Q 041023 142 EKLARVAIKL---GLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVF 218 (303)
Q Consensus 142 ~~La~~a~~~---gL~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~k~laD~fEAliGAIylD~G~~~~~v~~~i 218 (303)
++|+.+|.++ ||+++++.++++.. .+....+++++|+|||+|||||+|+|+ +.+++|+
T Consensus 84 ~~la~~a~~l~~~gL~~~l~~~~~e~~-----------------~~~~~~~~~lad~~EAliGAiyld~g~--~~~~~~i 144 (242)
T 2a11_A 84 QALADVARRLCAEGLGVHVLLGRGEAN-----------------TGGADKSSILADGMESLLGAIYLQHGM--EKAREVI 144 (242)
T ss_dssp HHHHHHHHHHSSSCSGGGCBCCHHHHH-----------------TTGGGCHHHHHHHHHHHHHHHHHHHCH--HHHHHHH
T ss_pred HHHHHHHHHhhhhChHHHhhcCchhhh-----------------cCCCCCccHHHHHHHHHHHHHHhcCCH--HHHHHHH
Confidence 9999999999 99999998764310 233457899999999999999999997 8999999
Q ss_pred HHhhcccCCCCc---ccCCCccHHHHHHHhCCCcceEEEee------cceeEEEEEECCEEEEEEEeccchHHHHHHHHH
Q 041023 219 KELLKPMISPET---LKTHPVTELYEVCQKNKLKVKFVDLW------KESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289 (303)
Q Consensus 219 ~~ll~~~l~~~~---~~~~Pk~~Lqe~~q~~~~~~~~~~~~------~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~ 289 (303)
..++.|.+.... ...|||+.||||||+++...|.|++. .+.|+|+|+++|+.+|+|.|.|+|+ ||++||+
T Consensus 145 ~~~~~~~~~~~~~~~~~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~-Ae~~AA~ 223 (242)
T 2a11_A 145 LRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKE-AEQKAAA 223 (242)
T ss_dssp HHHTHHHHHHTTC-------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhhccccCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeeeCCHHH-HHHHHHH
Confidence 999988765322 35799999999999999877766543 3468999999999999999999996 9999999
Q ss_pred HHHHHHHhh
Q 041023 290 DALNNIERL 298 (303)
Q Consensus 290 ~AL~~l~~~ 298 (303)
.||+.|..-
T Consensus 224 ~AL~~L~~~ 232 (242)
T 2a11_A 224 AAWKALEVL 232 (242)
T ss_dssp ---------
T ss_pred HHHHHHhhc
Confidence 999998754
No 6
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=2.3e-47 Score=355.68 Aligned_cols=218 Identities=28% Similarity=0.295 Sum_probs=127.7
Q ss_pred CCCcCCccH-HHhcCCc-cCCHHHHHHhhcCCCCCCC----------CCChhHHHHhhHHHHHHHHHHHHHHhCCCCChh
Q 041023 62 LPNANNLDE-EEILGYR-FNNKNLLEEAFTDPSCPER----------FFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129 (303)
Q Consensus 62 ~~~~~~l~~-e~~lgy~-F~~~~LL~~AlTh~S~~~~----------~~~~erLEfLGDavL~~~v~~~l~~~~p~~~~g 129 (303)
.+....... |++|||+ |+|++||.+||||+||... ..+|||||||||+||+++++++||.+||++++|
T Consensus 79 ~~~~~~~~~lE~~igy~~F~d~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDavL~l~vs~~L~~~~P~~~eG 158 (341)
T 3rv0_A 79 HDFKDSNTDVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEG 158 (341)
T ss_dssp TTCCSSCCTTGGGCSSCCCSCHHHHHHHHCCCCCC---CCSCHHHHGGGCTHHHHHHHHHHHHHHHHHHHHHHCTTCCHH
T ss_pred cCCCcchhHHHHhcCCCCcCCHHHHHHHhcCcCccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCCChh
Confidence 345666777 9999999 9999999999999999742 358999999999999999999999999999999
Q ss_pred chHHHHHhhcChHHHHHHHHHcCchhhhhcCCcchHHHHHHHHHHhhcCCCCCCCCCCCchhHHHHHHHHhhhhcccC--
Q 041023 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDC-- 207 (303)
Q Consensus 130 ~Lt~lr~~lvsn~~La~~a~~~gL~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~k~laD~fEAliGAIylD~-- 207 (303)
.|+.+|+.+|||.+|+.+|.++||+++++++.+... ..+....++++||+|||+|||||+|+
T Consensus 159 ~Lt~lr~~lVs~~~La~iA~~lgL~~~l~~~~g~~~----------------~~~~~~~~~ilaD~fEAlIGAIylD~~~ 222 (341)
T 3rv0_A 159 MLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIATPT----------------RVVKDKMSKRYADCVEAYIGALVIDRFG 222 (341)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHTTTTTTTCCSSCCC--------------------CCHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhCHHHHHHHHHHcCcHHHhhhcCChhh----------------hccCCccccHHHHHHHHHHHHHhhcCcc
Confidence 999999999999999999999999999997533210 01122357999999999999999998
Q ss_pred -CCCHHHHHHHHHHhhcccCCCC-------cccCCCccHHHHHHHhCCCcc-eEEEee--cceeEEEEEECCEEEEEEEe
Q 041023 208 -NSSIDIVWKVFKELLKPMISPE-------TLKTHPVTELYEVCQKNKLKV-KFVDLW--KESTAFHIFIEDQLLGRGAY 276 (303)
Q Consensus 208 -G~~~~~v~~~i~~ll~~~l~~~-------~~~~~Pk~~Lqe~~q~~~~~~-~~~~~~--~~~~~v~V~i~~~~ig~G~g 276 (303)
|+ +.+++|+.+++.|.+... ....|||+.||||||+++... |.|++. .+.|+|+|+++|+.+|+|.|
T Consensus 223 ~G~--~~a~~fi~~l~~~~l~~~~~~~~~~~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~GpF~v~v~i~~~~~g~G~G 300 (341)
T 3rv0_A 223 TEF--LDIKEWLEELSEKKLAKSSQMVIKEPLNKNAKNELAELLQINKLGHKLHYRKLTEMPPFRVEVKIGDILLDEAEG 300 (341)
T ss_dssp STT--HHHHHHHHHHTHHHHHCGGGC------------------------------------------------------
T ss_pred CCH--HHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHcCCCCCceEEEEeccCCEEEEEEECCEEEEEEEe
Confidence 66 899999999988876431 235799999999999988643 355543 34589999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHhh
Q 041023 277 APKKEIAHNRAAKDALNNIERL 298 (303)
Q Consensus 277 ~skk~~Ae~~AA~~AL~~l~~~ 298 (303)
.|+|+ |||+||+.||++++.+
T Consensus 301 ~SKK~-AEq~AA~~AL~~L~~~ 321 (341)
T 3rv0_A 301 NSIRE-AEHRAAMKVLENDELL 321 (341)
T ss_dssp ----------------------
T ss_pred CCHHH-HHHHHHHHHHHHhhhh
Confidence 99996 9999999999999875
No 7
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=100.00 E-value=1.4e-37 Score=263.49 Aligned_cols=147 Identities=29% Similarity=0.500 Sum_probs=130.3
Q ss_pred CCCcCCccH-HHhcCCccCCHHHHHHhhcCCCCCCCCCChhHHHHhhHHHHHHHHHHHHHHhCCCCChhchHHHHHhhcC
Q 041023 62 LPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVN 140 (303)
Q Consensus 62 ~~~~~~l~~-e~~lgy~F~~~~LL~~AlTh~S~~~~~~~~erLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~lr~~lvs 140 (303)
.|.-..+.. |++|||+|+|++||.+||||+|+... .+|||||||||+||++++++++|.+||+.++|.|+.+|+.+||
T Consensus 22 ~~~m~~l~~le~~lgy~F~d~~LL~~AlTH~S~~~~-~~neRLEfLGDaVL~l~vs~~L~~~~P~~~eg~Lt~~r~~lVs 100 (170)
T 3o2r_A 22 SNAMKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKS-YNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVN 100 (170)
T ss_dssp -----CHHHHHHHHTCCCSSHHHHHHHTBCTTSSTT-CCSHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHSS
T ss_pred CccHHHHHHHHHHhCCCCCCHHHHHHHhcCCCCCCC-cchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHC
Confidence 344456888 99999999999999999999999863 7999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCchhhhhcCCcchHHHHHHHHHHhhcCCCCCCCCCCCchhHHHHHHHHhhhhcccCCCCHHHHHHHHHH
Q 041023 141 TEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKE 220 (303)
Q Consensus 141 n~~La~~a~~~gL~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~k~laD~fEAliGAIylD~G~~~~~v~~~i~~ 220 (303)
|++|+.+|.++||+++++.++++.. .+....++++||+|||+|||||+|+|+ +.+++|+.+
T Consensus 101 ~~~La~ia~~lgL~~~l~~~~~~~~-----------------~~~~~~~~ilad~fEAliGAiylD~G~--~~a~~~i~~ 161 (170)
T 3o2r_A 101 EKSFAKIANSLNLGDFILMSVAEEN-----------------NGGKEKPSILSDALEAIIGAIHLEAGF--EFAKTIALR 161 (170)
T ss_dssp HHHHHHHHHHTTGGGTCBCCHHHHH-----------------TTGGGCHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHhhhcCcchhh-----------------cCCCCcchHHHHHHHHHHHHHHHHCCH--HHHHHHHHH
Confidence 9999999999999999998765311 234567899999999999999999997 899999999
Q ss_pred hhcccCCC
Q 041023 221 LLKPMISP 228 (303)
Q Consensus 221 ll~~~l~~ 228 (303)
++.|.++.
T Consensus 162 ~~~~~~~~ 169 (170)
T 3o2r_A 162 LIEKNFPQ 169 (170)
T ss_dssp HHHHHCTT
T ss_pred HHHHHHhc
Confidence 99998753
No 8
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=1.4e-35 Score=263.95 Aligned_cols=150 Identities=26% Similarity=0.329 Sum_probs=125.8
Q ss_pred CCcCCccH-HHhcCCc-cCCHHHHHHhhcCCCCCC----------CCCChhHHHHhhHHHHHHHHHHHHHHhCCCCChhc
Q 041023 63 PNANNLDE-EEILGYR-FNNKNLLEEAFTDPSCPE----------RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130 (303)
Q Consensus 63 ~~~~~l~~-e~~lgy~-F~~~~LL~~AlTh~S~~~----------~~~~~erLEfLGDavL~~~v~~~l~~~~p~~~~g~ 130 (303)
........ |++|||+ |+|++||.+||||+||.. ...+|||||||||+||+++++++||.+||+.++|.
T Consensus 80 ~~~~~~~~lE~~lgY~~F~d~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDaVL~l~vs~~L~~~~P~~~eG~ 159 (246)
T 3rv1_A 80 DFKDSNTDVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGM 159 (246)
T ss_dssp TCCSSCCGGGGGCSSCCCSCHHHHHHTTCCCC--------------CCCSHHHHHHHHHHHHHHHHHHHHHHCTTCCHHH
T ss_pred CCCcchHHHHHhcCCCCcCCHHHHHHHHcCCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCChhH
Confidence 44555667 9999999 999999999999999963 24689999999999999999999999999999999
Q ss_pred hHHHHHhhcChHHHHHHHHHcCchhhhhcCCcchHHHHHHHHHHhhcCCCCCCCCCCCchhHHHHHHHHhhhhcccC-CC
Q 041023 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDC-NS 209 (303)
Q Consensus 131 Lt~lr~~lvsn~~La~~a~~~gL~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~k~laD~fEAliGAIylD~-G~ 209 (303)
||.+|+.+|||.+|+.+|.++||+++++++.+... ..+....++++||+|||+|||||+|+ |.
T Consensus 160 Lt~lRs~lVsn~~La~iA~~lgL~~~l~~~~g~~~----------------~~~~~~~~~ilAD~fEAlIGAIylD~~g~ 223 (246)
T 3rv1_A 160 LSQMKESIVNNNNLFDWSTKLNFTKRLQGNIATPT----------------RVVKDKMSKRYADCVQAYIGALVIDRFGT 223 (246)
T ss_dssp HHHHHHHHHSHHHHHHHHHHTTSHHHHCSSCC---------------------------CHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHhCHHHHHHHHHHCCcHHHHhhcCCHhh----------------hccCcccccHHHHHHHHHHHHHhHcCCCC
Confidence 99999999999999999999999999997543210 01122468999999999999999999 77
Q ss_pred CHHHHHHHHHHhhcccCCC
Q 041023 210 SIDIVWKVFKELLKPMISP 228 (303)
Q Consensus 210 ~~~~v~~~i~~ll~~~l~~ 228 (303)
+++.+++|+.+++.|.+++
T Consensus 224 ~l~~v~~~l~~L~~p~l~e 242 (246)
T 3rv1_A 224 EFLDIKEWLEELSEKKLAK 242 (246)
T ss_dssp TTHHHHHHHHHHTHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 7899999999999998765
No 9
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=99.96 E-value=1.7e-29 Score=256.45 Aligned_cols=132 Identities=27% Similarity=0.456 Sum_probs=122.8
Q ss_pred ccH-HHhcCCccCC--------------------------HHHHHHhhcCCCCCCCCCChhHHHHhhHHHHHHHHHHHHH
Q 041023 68 LDE-EEILGYRFNN--------------------------KNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQF 120 (303)
Q Consensus 68 l~~-e~~lgy~F~~--------------------------~~LL~~AlTh~S~~~~~~~~erLEfLGDavL~~~v~~~l~ 120 (303)
+.. |++|||+|+| ++||.+||||+| |||||||||+||++++++|+|
T Consensus 595 ~~~lE~~lgY~F~~~~~~~~~~~L~~~~l~~i~~~~~~~~~~LL~~AlTH~S-------neRLEfLGDaVL~l~vs~~L~ 667 (756)
T 2qvw_A 595 LALYEKILAYESSGGSKHIAAQTVSRSLAVPIPSGTIPFLIRLLQIALTPHV-------YQKLELLGDAFLKCSLALHLH 667 (756)
T ss_dssp HHHHHHHHSSCCCCSSHHHHHHHHHHTTCSCCCSSCHHHHHHHHHHHHSTGG-------GHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCccCcchhhhHhhhhhhhccccccccccccHHHHHHHhcCcc-------chHHHHHHHHHHHHHHHHHHH
Confidence 566 9999999999 899999999998 899999999999999999999
Q ss_pred HhCCCCChhchHHHHHhhcChHHHHHHHHHcC--chhhhhcCCcchHHHHHHHHHHhhcCCCCCCCCCCCchhHHHHHHH
Q 041023 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLG--LHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVES 198 (303)
Q Consensus 121 ~~~p~~~~g~Lt~lr~~lvsn~~La~~a~~~g--L~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~k~laD~fEA 198 (303)
.+||++++|.||.+|+.+|||++|+.+|.++| |+++++.++++ ....+|++||+|||
T Consensus 668 ~~~p~~~eG~Lt~lrs~lV~~~~La~~a~~lg~~L~~~l~~~~~e---------------------~~~~~kilaD~~EA 726 (756)
T 2qvw_A 668 ALHPTLTEGALTRMRQSAETNSVLGRLTKRFPSVVSEVIIESHPK---------------------IQPDSKVYGDTFEA 726 (756)
T ss_dssp HHCTTCCHHHHHHHHHHTTSHHHHHHHHHTSCTHHHHHHHHHSTT---------------------CCTTCSHHHHHHHH
T ss_pred HhCCCCChHHHHHHHHHHhCChHHHHHHHHhcccHHHHHhcCchh---------------------hcCCccHHHHHHHH
Confidence 99999999999999999999999999999999 99999987653 12568999999999
Q ss_pred HhhhhcccCCCCHHHHHHHHHHhhcccCCCC
Q 041023 199 TIGAVFIDCNSSIDIVWKVFKELLKPMISPE 229 (303)
Q Consensus 199 liGAIylD~G~~~~~v~~~i~~ll~~~l~~~ 229 (303)
+|||||+|+|+ +.+++|+.+++.|.++.+
T Consensus 727 liGAiylD~G~--~~a~~~v~~~~~~~l~~~ 755 (756)
T 2qvw_A 727 ILAAILLACGE--EAAGAFVREHVLPQVVAD 755 (756)
T ss_dssp HHHHHHHHHCH--HHHHHHHHHHTGGGCCCC
T ss_pred HHHHHHHhCCH--HHHHHHHHHHHHHHhhcc
Confidence 99999999997 899999999999987653
No 10
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=99.96 E-value=3.7e-30 Score=261.17 Aligned_cols=165 Identities=21% Similarity=0.286 Sum_probs=140.0
Q ss_pred HHhhcCCCCCCCCCChhHHHHhhHHHHHHHHHHHHHHhCCCCChhchHHHHHhhcChHHHHHHHHHcCchhhhhcCCcch
Q 041023 85 EEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLL 164 (303)
Q Consensus 85 ~~AlTh~S~~~~~~~~erLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~lr~~lvsn~~La~~a~~~gL~~~i~~~~~~~ 164 (303)
.+||||+|+.. ..+|||||||||+||++++++|||.+||++++|.||.+|+.+|||++|+.+|+++||+++++.++++
T Consensus 320 ~~AlTh~s~~~-~~nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l~~~~~e- 397 (756)
T 2qvw_A 320 RTPFGPFGVSH-TDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFSNNL- 397 (756)
T ss_dssp EEECBGGGBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTCBCCSCC-
T ss_pred hhhcccccccC-CCCcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCchHHHHHHHHcChHHHhccCCCC-
Confidence 34788888765 4689999999999999999999999999999999999999999999999999999999999988753
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCchhHHHHHHHHhhhhccc-CCCCHHHHHHHHHHhhcccCCCCc---ccCCC-ccHH
Q 041023 165 EEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFID-CNSSIDIVWKVFKELLKPMISPET---LKTHP-VTEL 239 (303)
Q Consensus 165 ~~~i~~~~~~~~~~~~~~~~~~~~~k~laD~fEAliGAIylD-~G~~~~~v~~~i~~ll~~~l~~~~---~~~~P-k~~L 239 (303)
...++++||+|||+|||||+| +|+ +.+++|+.+++.+.+.... ...|| |+.|
T Consensus 398 ---------------------~~~~~ilaD~~EAliGAiylD~~G~--~~a~~~v~~~~~~~~~~~~~~~~~~Dp~Kt~L 454 (756)
T 2qvw_A 398 ---------------------VAKSKTWADMYEEIVGSIFTGPNGI--YGCEEFLAKTLMSPEHSKTVGSACPDAVTKAS 454 (756)
T ss_dssp -----------------------CCCCHHHHHHHHHHHHHHSTTHH--HHHHHHHHHHHBCGGGSCC---CCCHHHHHHH
T ss_pred ---------------------CCcccHHHhHHHHHhCcccccccCh--HHHHHHHHHHHHhhhhcccccccccCchHHHH
Confidence 145799999999999999999 997 8999999999998876532 35688 9999
Q ss_pred HHHHHhCCCcceEEEeecceeEEEEEECCEEEEEEEeccchHHHH---------HHHHHHHHHHHHhh
Q 041023 240 YEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAH---------NRAAKDALNNIERL 298 (303)
Q Consensus 240 qe~~q~~~~~~~~~~~~~~~~~v~V~i~~~~ig~G~g~skk~~Ae---------~~AA~~AL~~l~~~ 298 (303)
||++|.++ ++.|.+.+.+ .|+ .+||+.||+++..+
T Consensus 455 qE~~q~~~-----------------------ia~~v~~~~~-~ak~~~~~~~~~~~aa~~aL~~l~~~ 498 (756)
T 2qvw_A 455 KRVCMGEA-----------------------GAHEFRSLVD-YACEQGISVFCSSRVSTMFLERLRDI 498 (756)
T ss_dssp HHHHTSCC-----------------------CHHHHHHHHH-HTTTTTCCCBSSSHHHHHHHHHHHHS
T ss_pred HHHHhccc-----------------------hhhhhhhhhh-HHhhhccccchhhHHHHHHHHhhccc
Confidence 99998543 3455555655 366 57999999888765
No 11
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=99.87 E-value=8.4e-22 Score=160.07 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=94.6
Q ss_pred CCChhHHHHhhHHHHHHHHHHHHHHhCCCCChhchHHHHHhhcChHHHHHHHHHc----Cch----hhhhcCCcchHHHH
Q 041023 97 FFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKL----GLH----KYLRHNKPLLEEQI 168 (303)
Q Consensus 97 ~~~~erLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~lr~~lvsn~~La~~a~~~----gL~----~~i~~~~~~~~~~i 168 (303)
..+.+|||||||||++++|++|||.+ |..++|.||++|+.+||.++++.++.++ +|. ++++.+...
T Consensus 9 ~~~~erLefLGDAVlel~vr~~L~~~-~~~~eg~L~k~r~~~V~a~aqa~~~~~l~~~~~L~eeE~~~~r~Grn~----- 82 (138)
T 1u61_A 9 QLNSLALAYMGDAVYEQYIRYHLLQK-GKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNA----- 82 (138)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHH-CCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCC-----
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHcCHHHHHHHHHHhhcccCCChHHHHHhhcCCCc-----
Confidence 46899999999999999999999999 8899999999999999999999999999 998 788877653
Q ss_pred HHHHHHhhcCCCCCCCCCCCchh----HHHHHHHHhhhhcccCCCCHHHHHHHHHHhhc
Q 041023 169 REFSEAILDYPLHSNGLVDAPKV----LADIVESTIGAVFIDCNSSIDIVWKVFKELLK 223 (303)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~k~----laD~fEAliGAIylD~G~~~~~v~~~i~~ll~ 223 (303)
.+.+....+++ +||.|||+|||||+|+|+ +.+++|+..++.
T Consensus 83 ------------~~~~~~k~~si~~Yr~A~~fEALiGalYLd~g~--er~~~~i~~~~~ 127 (138)
T 1u61_A 83 ------------NSGTVPKNTDVQTYRHSTAFEALIGYHHLLNNR--ERLDEIVYKAIA 127 (138)
T ss_dssp ------------CSSCCCTTCCHHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH
T ss_pred ------------ccCCCCCCCchhhhhhhhHHHHHHHHHHHCCCH--HHHHHHHHHHHH
Confidence 12234566789 999999999999999998 889999988774
No 12
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=99.81 E-value=5.7e-20 Score=148.96 Aligned_cols=110 Identities=19% Similarity=0.209 Sum_probs=89.2
Q ss_pred CCChhHHHHhhHHHHHHHHHHHHHHhCCCCChhchHHHHHhhcChHHHHHHHHHcC--ch----hhhhcCCcchHHHHHH
Q 041023 97 FFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLG--LH----KYLRHNKPLLEEQIRE 170 (303)
Q Consensus 97 ~~~~erLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~lr~~lvsn~~La~~a~~~g--L~----~~i~~~~~~~~~~i~~ 170 (303)
..|.+|||||||||++++|++||+.+ |. ++|.|+++|+.+||.+++|.++..++ |. .+++.+...
T Consensus 12 ~~~~~~LefLGDAVleL~vr~~L~~~-~~-~~g~L~k~~~~~V~a~aqa~~~~~l~~~Lte~E~~~~rrGrna------- 82 (137)
T 2gsl_A 12 DYSGLELAFLGDAIWELEIRKYYLQF-GY-NIPTLNKYVKAKVNAKYQSLIYKKIINDLDEEFKVIGKRAKNS------- 82 (137)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTS-CB-CHHHHHHHHHHHHSHHHHHHHHHHHGGGSCHHHHHHHHHHHC--------
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHhCHHHHHHHHHHHHHHhCHHHHHHHHhcccc-------
Confidence 46899999999999999999999998 88 99999999999999999999999995 44 333333221
Q ss_pred HHHHhhcCCCCCCCCCCCchh----HHHHHHHHhhhhcccCCCCHHHHHHHHHHhhcccCC
Q 041023 171 FSEAILDYPLHSNGLVDAPKV----LADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS 227 (303)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~k~----laD~fEAliGAIylD~G~~~~~v~~~i~~ll~~~l~ 227 (303)
.+.+.....++ +||.|||+|||+|+|+|+ +.+++|+..++...+.
T Consensus 83 ----------~~~~~~k~~si~~Y~~At~fEALiGaLYLd~~~--erl~~ll~~~~~~~~~ 131 (137)
T 2gsl_A 83 ----------NIKTFPRSCTVMEYKEATALEAIIGAMYLLKKE--EEIKKIINIVIKGELE 131 (137)
T ss_dssp -----------CCSCCSSSCHHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHTTC-
T ss_pred ----------cCCCCCCCCChHHHHHhhHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHH
Confidence 11123345564 999999999999999998 8999999998865554
No 13
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.50 E-value=7e-14 Score=105.17 Aligned_cols=68 Identities=18% Similarity=0.149 Sum_probs=57.9
Q ss_pred ccCCCccHHHHHHHhCCCcceEEEee-------cceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHhhhc
Q 041023 231 LKTHPVTELYEVCQKNKLKVKFVDLW-------KESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLLN 300 (303)
Q Consensus 231 ~~~~Pk~~Lqe~~q~~~~~~~~~~~~-------~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~~~ 300 (303)
...|||+.||||||+.+...|.|++. .+.|+|.|+|+|. +|+|.|.|||+ ||+.||+.||+.|..+-+
T Consensus 13 ~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~-Aeq~AA~~AL~~L~~~p~ 87 (88)
T 3adl_A 13 RGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKL-AKRNAAAKMLLRVHTVPL 87 (88)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEESSHHH-HHHHHHHHHHHHHHC---
T ss_pred CCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHH-HHHHHHHHHHHHHHccCC
Confidence 45799999999999999987777653 3579999999998 99999999996 999999999999987643
No 14
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.48 E-value=8.2e-14 Score=100.10 Aligned_cols=61 Identities=20% Similarity=0.217 Sum_probs=54.2
Q ss_pred CccHHHHHHHhCCCcceEEEee-------cceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHh
Q 041023 235 PVTELYEVCQKNKLKVKFVDLW-------KESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297 (303)
Q Consensus 235 Pk~~Lqe~~q~~~~~~~~~~~~-------~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~ 297 (303)
|++.||||||+++...|.|++. .+.|+|.|+|+|. +|+|.|.|+|+ ||+.||+.||+.|.+
T Consensus 2 p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~-Aeq~AA~~al~~L~~ 69 (69)
T 1di2_A 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQV-AKRVAAEKLLTKFKT 69 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHH-HHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHH-HHHHHHHHHHHHHhC
Confidence 8999999999999987777653 3579999999998 99999999996 999999999999863
No 15
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.48 E-value=5.3e-14 Score=102.25 Aligned_cols=63 Identities=21% Similarity=0.135 Sum_probs=56.4
Q ss_pred CCCccHHHHHHHhCCCcceEEEee------cceeEEEEEECCEEEEEEEe-ccchHHHHHHHHHHHHHHHH
Q 041023 233 THPVTELYEVCQKNKLKVKFVDLW------KESTAFHIFIEDQLLGRGAY-APKKEIAHNRAAKDALNNIE 296 (303)
Q Consensus 233 ~~Pk~~Lqe~~q~~~~~~~~~~~~------~~~~~v~V~i~~~~ig~G~g-~skk~~Ae~~AA~~AL~~l~ 296 (303)
.|||+.||||||+++...|.|++. .+.|+|.|+|+|..+|+|.| .|+|+ ||+.||+.||+.|.
T Consensus 3 ~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~-Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 3 HVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKA-AEQSAAEVALRELA 72 (73)
T ss_dssp CSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHH-HHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHH-HHHHHHHHHHHHhh
Confidence 589999999999999988877653 35799999999999999999 89996 99999999999885
No 16
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.47 E-value=4.2e-14 Score=103.56 Aligned_cols=64 Identities=20% Similarity=0.081 Sum_probs=56.6
Q ss_pred CCCccHHHHHHHhCCCcceEEEee-------cceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHh
Q 041023 233 THPVTELYEVCQKNKLKVKFVDLW-------KESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297 (303)
Q Consensus 233 ~~Pk~~Lqe~~q~~~~~~~~~~~~-------~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~ 297 (303)
.|||+.||||||+++...|.|++. .+.|+|.|+|+|+.+|.|.|.|||+ ||+.||+.||+.|..
T Consensus 4 ~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~-Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKD-AEISAGRTALLAIQS 74 (76)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHH-HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHH-HHHHHHHHHHHHHhh
Confidence 589999999999999988777653 3469999999999999999999996 999999999999863
No 17
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.45 E-value=1.9e-13 Score=104.92 Aligned_cols=67 Identities=22% Similarity=0.213 Sum_probs=59.3
Q ss_pred cCCCccHHHHHHHhCCCcceEEEeec-----ceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHhhh
Q 041023 232 KTHPVTELYEVCQKNKLKVKFVDLWK-----ESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLL 299 (303)
Q Consensus 232 ~~~Pk~~Lqe~~q~~~~~~~~~~~~~-----~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~~ 299 (303)
..|||+.||||||+++...|.|++.. +.|+|.|+|+|+.+|.|.|.|+|+ ||++||+.||+.|...+
T Consensus 15 ~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~~~F~~~V~v~g~~~~~G~G~SKK~-Aeq~AA~~AL~~L~~~~ 86 (98)
T 1x47_A 15 GKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKL-AKNKAARATLEILIPDF 86 (98)
T ss_dssp CCCHHHHHHHHHHHHTCSCCEEEEEECSSSSCCEEEEEEETTEEEEEEEESSHHH-HHHHHHHHHHHHHCSSS
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEEeECCCCcEEEEEEECCEEEEEeeeCCHHH-HHHHHHHHHHHHHHhhh
Confidence 56999999999999999888776643 569999999999999999999996 99999999999997543
No 18
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.44 E-value=2.1e-13 Score=102.80 Aligned_cols=65 Identities=18% Similarity=0.187 Sum_probs=57.4
Q ss_pred cCCCccHHHHHHHhCCCcceEEEee-------cceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHhh
Q 041023 232 KTHPVTELYEVCQKNKLKVKFVDLW-------KESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298 (303)
Q Consensus 232 ~~~Pk~~Lqe~~q~~~~~~~~~~~~-------~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~ 298 (303)
..|||+.||||||++++.+|.|++. .+.|+|+|+|+|. +|+|.|.|||+ ||+.||+.||+.|.+.
T Consensus 15 ~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~-Aeq~AA~~AL~~L~~~ 86 (89)
T 2cpn_A 15 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKL-AKRNAAAKMLLRVSGP 86 (89)
T ss_dssp CCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHH-HHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHH-HHHHHHHHHHHHHHhh
Confidence 5699999999999999987777653 3579999999998 99999999996 9999999999999754
No 19
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.44 E-value=7.9e-14 Score=102.10 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=56.7
Q ss_pred ccCCCccHHHHHHHhCCCcceEEEee-------cceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHhh
Q 041023 231 LKTHPVTELYEVCQKNKLKVKFVDLW-------KESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298 (303)
Q Consensus 231 ~~~~Pk~~Lqe~~q~~~~~~~~~~~~-------~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~ 298 (303)
...|||+.||||||+++.. |.|++. .+.|+|+|+|+| .+|+|.|.|+|+ ||+.||+.||+.|..+
T Consensus 5 ~~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~-Aeq~AA~~aL~~L~~l 76 (76)
T 1ekz_A 5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKV-SKKRAAEKMLVELQKL 76 (76)
T ss_dssp CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTS-SSHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHH-HHHHHHHHHHHHHhhC
Confidence 3569999999999999988 766653 356899999999 999999999996 9999999999998753
No 20
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.44 E-value=7.1e-14 Score=104.49 Aligned_cols=64 Identities=17% Similarity=0.292 Sum_probs=54.2
Q ss_pred CCCccHHHHHHHhC-----CCcceEEEee-------cceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHh
Q 041023 233 THPVTELYEVCQKN-----KLKVKFVDLW-------KESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297 (303)
Q Consensus 233 ~~Pk~~Lqe~~q~~-----~~~~~~~~~~-------~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~ 297 (303)
.|||+.||||||+. +...|.|++. .+.|+|.|+|+|+.+|+|.|.|+|+ ||+.||+.||+.|..
T Consensus 1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~-AEq~AA~~AL~~L~~ 76 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQ-AEMGAAMDALEKYNF 76 (85)
T ss_dssp CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHH-HHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHH-HHHHHHHHHHHHHhH
Confidence 48999999999984 5556666653 3569999999999999999999996 999999999988754
No 21
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.43 E-value=3.7e-13 Score=101.47 Aligned_cols=64 Identities=20% Similarity=0.231 Sum_probs=56.1
Q ss_pred cCCCccHHHHHHHhCCCcceEEEee-------cceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHh
Q 041023 232 KTHPVTELYEVCQKNKLKVKFVDLW-------KESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297 (303)
Q Consensus 232 ~~~Pk~~Lqe~~q~~~~~~~~~~~~-------~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~ 297 (303)
..|||+.||||||+++...|.|++. .+.|+|.|+|+|. +|.|.|.|||+ ||+.||+.||+.|..
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~-Aeq~AA~~AL~~L~~ 75 (89)
T 1uhz_A 5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTGPNKKI-AKKNAAEAMLLQLGY 75 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEESSHHH-HHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHH-HHHHHHHHHHHHHhc
Confidence 3699999999999999987777653 3579999999996 99999999996 999999999999863
No 22
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.42 E-value=4.2e-13 Score=100.12 Aligned_cols=64 Identities=25% Similarity=0.310 Sum_probs=55.6
Q ss_pred cCCCccHHHHHHHhCCCcceEEEe-------ecceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHhh
Q 041023 232 KTHPVTELYEVCQKNKLKVKFVDL-------WKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298 (303)
Q Consensus 232 ~~~Pk~~Lqe~~q~~~~~~~~~~~-------~~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~ 298 (303)
..|||+.||||||+++ ..|.|++ +.+.|+|.|+|+| .+|+|.|.|||+ ||+.||+.||+.|...
T Consensus 7 ~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~-Aeq~AA~~aL~~L~~~ 77 (84)
T 2dix_A 7 GKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKL-AKHRAAEAAINILKAN 77 (84)
T ss_dssp CCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTH-HHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHH-HHHHHHHHHHHHHhcc
Confidence 4699999999999998 4566654 2457999999999 999999999996 9999999999999765
No 23
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.41 E-value=5.7e-13 Score=100.69 Aligned_cols=65 Identities=23% Similarity=0.257 Sum_probs=53.4
Q ss_pred ccCCCccHHHHHHHhCCCcceEEEee-------cceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHhh
Q 041023 231 LKTHPVTELYEVCQKNKLKVKFVDLW-------KESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298 (303)
Q Consensus 231 ~~~~Pk~~Lqe~~q~~~~~~~~~~~~-------~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~ 298 (303)
...|||+.||||||+++. .|.|++. ++.|+|.|+|+|+ +|+|.|.|||+ ||+.||+.||+.|...
T Consensus 12 ~~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~-Aeq~AA~~aL~~L~~~ 83 (90)
T 3llh_A 12 PGKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQGPSKKA-AKHKAAEVALKHLKGG 83 (90)
T ss_dssp -CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEEEESSHHH-HHHHHHHHHHHHHC--
T ss_pred cCCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEeCCHHH-HHHHHHHHHHHHHHhc
Confidence 467999999999999875 5655542 3579999999997 79999999996 9999999999998753
No 24
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.40 E-value=1.6e-13 Score=103.74 Aligned_cols=65 Identities=22% Similarity=0.173 Sum_probs=55.9
Q ss_pred cCCCccHHHHHHHhCCCcceEEEee------cceeEEEEEECCE-EEEEEEeccchHHHHHHHHHHHHHHHHhh
Q 041023 232 KTHPVTELYEVCQKNKLKVKFVDLW------KESTAFHIFIEDQ-LLGRGAYAPKKEIAHNRAAKDALNNIERL 298 (303)
Q Consensus 232 ~~~Pk~~Lqe~~q~~~~~~~~~~~~------~~~~~v~V~i~~~-~ig~G~g~skk~~Ae~~AA~~AL~~l~~~ 298 (303)
..|||+.||||+|+.+ ..|.|++. ++.|+|.|+|+|. .+|+|.|.|+|+ |||+||+.||++|+-+
T Consensus 5 ~~D~KT~LQE~~Q~~~-~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~-AEQ~AA~~AL~~l~~l 76 (94)
T 1t4n_A 5 DMNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKI-AGIRAAENALRDKKML 76 (94)
T ss_dssp CHHHHHHHHHHTCSSS-SCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEEESSHHH-HHHHHHHHHHHCHHHH
T ss_pred CCCchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHH-HHHHHHHHHHHHHHHH
Confidence 4589999999999975 45666653 3469999999999 999999999996 9999999999998766
No 25
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.40 E-value=3.1e-13 Score=105.78 Aligned_cols=65 Identities=22% Similarity=0.173 Sum_probs=56.0
Q ss_pred cCCCccHHHHHHHhCCCcceEEEee------cceeEEEEEECCE-EEEEEEeccchHHHHHHHHHHHHHHHHhh
Q 041023 232 KTHPVTELYEVCQKNKLKVKFVDLW------KESTAFHIFIEDQ-LLGRGAYAPKKEIAHNRAAKDALNNIERL 298 (303)
Q Consensus 232 ~~~Pk~~Lqe~~q~~~~~~~~~~~~------~~~~~v~V~i~~~-~ig~G~g~skk~~Ae~~AA~~AL~~l~~~ 298 (303)
..|||+.||||+|..+ ..|.|.+. ++.|+|.|+|+|. .+|+|.|.|+|+ |||+||+.||+.+..+
T Consensus 7 ~~D~KT~LQE~~Q~~~-~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~-AEQ~AA~~AL~~l~~l 78 (117)
T 1t4o_A 7 DMNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKI-AGIRAAENALRDKKML 78 (117)
T ss_dssp CTTHHHHHHHHHCCGG-GCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHH-HHHHHHHHHHHCHHHH
T ss_pred CCCchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHH-HHHHHHHHHHHHHHHH
Confidence 4699999999999954 55666553 3469999999999 999999999996 9999999999998876
No 26
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.40 E-value=9.2e-13 Score=99.08 Aligned_cols=68 Identities=22% Similarity=0.211 Sum_probs=57.5
Q ss_pred cCCCccHHHHHHHhCCCcceEEEe----ecc-eeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHhhhc
Q 041023 232 KTHPVTELYEVCQKNKLKVKFVDL----WKE-STAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLLN 300 (303)
Q Consensus 232 ~~~Pk~~Lqe~~q~~~~~~~~~~~----~~~-~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~~~ 300 (303)
..|||+.||||||+++..+.|... +.+ .|+|.|+|+|+.+|.|.|.|||+ ||+.||+.||+.|...-|
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~~Y~~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~-Aeq~AA~~AL~~L~~~~~ 77 (88)
T 1x48_A 5 SSGYIGLVNSFAQKKKLSVNYEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQE-AKQLAAKEAYQKLLKSPP 77 (88)
T ss_dssp SSCHHHHHHHHHHHTTCCEEEEECCCSSSSSCCEEEEEEESSCEEEEEEESSHHH-HHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHcCCCCeeEEeeCCCCCCceEEEEEEECCEEEEEeecCCHHH-HHHHHHHHHHHHHHhcCC
Confidence 359999999999999987744311 234 59999999999999999999996 999999999999987644
No 27
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.39 E-value=7e-13 Score=102.64 Aligned_cols=67 Identities=19% Similarity=0.094 Sum_probs=56.2
Q ss_pred ccCCCccHHHHHHHhCCCcceEEEee------cceeEEEEEECCEEEEEEEe-ccchHHHHHHHHHHHHHHHHhh
Q 041023 231 LKTHPVTELYEVCQKNKLKVKFVDLW------KESTAFHIFIEDQLLGRGAY-APKKEIAHNRAAKDALNNIERL 298 (303)
Q Consensus 231 ~~~~Pk~~Lqe~~q~~~~~~~~~~~~------~~~~~v~V~i~~~~ig~G~g-~skk~~Ae~~AA~~AL~~l~~~ 298 (303)
...|||+.||||||+++...|.|++. .+.|+|.|+|+|+.+|.|.| .|||+ ||+.||+.||+.|..-
T Consensus 15 ~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~-Aeq~AA~~AL~~L~~~ 88 (103)
T 2l2n_A 15 NCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKA-AEQSAAEVALRELAKS 88 (103)
T ss_dssp ----CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHH-HHHHHHHHHHHHHhcc
Confidence 35699999999999999988777653 35799999999999999999 89996 9999999999999753
No 28
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.36 E-value=8.9e-13 Score=101.27 Aligned_cols=65 Identities=23% Similarity=0.334 Sum_probs=56.1
Q ss_pred cCCCccHHHHHHHhCCCcceEEEee------cceeEEEEEECC-EEEEEEEeccchHHHHHHHHHHHHHHHHhh
Q 041023 232 KTHPVTELYEVCQKNKLKVKFVDLW------KESTAFHIFIED-QLLGRGAYAPKKEIAHNRAAKDALNNIERL 298 (303)
Q Consensus 232 ~~~Pk~~Lqe~~q~~~~~~~~~~~~------~~~~~v~V~i~~-~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~ 298 (303)
..|||+.||||||++ ...|.|++. .+.|+|.|+|+| +.+|+|.|.|||+ ||+.||+.||+.|...
T Consensus 5 ~~d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~-Aeq~AA~~AL~~L~~~ 76 (99)
T 1whq_A 5 SSGIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKD-AQSNAARDFVNYLVRI 76 (99)
T ss_dssp CCSSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEeccCCHHH-HHHHHHHHHHHHHHhh
Confidence 469999999999999 666766652 346899999999 7999999999996 9999999999999763
No 29
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.35 E-value=5.5e-13 Score=102.10 Aligned_cols=66 Identities=18% Similarity=0.172 Sum_probs=56.5
Q ss_pred ccCCCccHHHHHHHhCCCcceEEEe-------ecceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHhh
Q 041023 231 LKTHPVTELYEVCQKNKLKVKFVDL-------WKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298 (303)
Q Consensus 231 ~~~~Pk~~Lqe~~q~~~~~~~~~~~-------~~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~ 298 (303)
...|||+.||||||+++.. |.|++ +.+.|+|.|+|+|+.+|.|.|.|||+ ||+.||+.||+.|..-
T Consensus 12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~-Aeq~AA~~AL~~L~~~ 84 (97)
T 1x49_A 12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQE-ARNAAAKLAVDILDNE 84 (97)
T ss_dssp CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHH-HHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHH-HHHHHHHHHHHHHHhh
Confidence 3568999999999999987 45543 23579999999999999999999996 9999999999998643
No 30
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.33 E-value=1.2e-12 Score=104.95 Aligned_cols=65 Identities=20% Similarity=0.186 Sum_probs=57.8
Q ss_pred cCCCccHHHHHHHhCCCcceEEEe----ecceeEEEEEECCEEEEEEEe-ccchHHHHHHHHHHHHHHHHh
Q 041023 232 KTHPVTELYEVCQKNKLKVKFVDL----WKESTAFHIFIEDQLLGRGAY-APKKEIAHNRAAKDALNNIER 297 (303)
Q Consensus 232 ~~~Pk~~Lqe~~q~~~~~~~~~~~----~~~~~~v~V~i~~~~ig~G~g-~skk~~Ae~~AA~~AL~~l~~ 297 (303)
..|||+.||||||+++...|.|++ +.+.|+|.|+|+|+.+|.|.| .|||+ ||+.||+.||+.|..
T Consensus 25 ~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~~H~~~F~v~V~v~g~~~g~G~G~~SKK~-AEQ~AA~~AL~~L~~ 94 (128)
T 1whn_A 25 QITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAEQKYQSTLWDKSKKL-AEQTAAIVCLRSQGL 94 (128)
T ss_dssp TCCHHHHHHHHHHHTTCCCCCCCEEECSSSCCEEEEEEETTEEEEESSCBSSHHH-HHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeecCCCcEEEEEEECCEEEEEEeccCCHHH-HHHHHHHHHHHHHhc
Confidence 469999999999999998876655 346799999999999999999 99996 999999999999964
No 31
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.30 E-value=5.4e-12 Score=91.54 Aligned_cols=62 Identities=19% Similarity=0.168 Sum_probs=52.0
Q ss_pred cCCCccHHHHHHHhCCCcceEEEe-------ecceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHh
Q 041023 232 KTHPVTELYEVCQKNKLKVKFVDL-------WKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297 (303)
Q Consensus 232 ~~~Pk~~Lqe~~q~~~~~~~~~~~-------~~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~ 297 (303)
..|||+.||||||. ...|.|.+ +++.|+|.|.|+|..+ .|.|.|||+ ||+.||+.||+.|..
T Consensus 3 ~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~-Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKK-AKLHAAEKALRSFVQ 71 (73)
T ss_dssp SSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHH-HHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHH-HHHHHHHHHHHHHhc
Confidence 46899999999996 44555544 2457999999999885 999999996 999999999999875
No 32
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.26 E-value=4.7e-12 Score=99.53 Aligned_cols=65 Identities=18% Similarity=0.141 Sum_probs=55.9
Q ss_pred cCCCccHHHHHHHhCCCcceEEEe------ecceeEEEEEE-----CCEEEEEEEeccchHHHHHHHHHHHHHHHHhh
Q 041023 232 KTHPVTELYEVCQKNKLKVKFVDL------WKESTAFHIFI-----EDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298 (303)
Q Consensus 232 ~~~Pk~~Lqe~~q~~~~~~~~~~~------~~~~~~v~V~i-----~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~ 298 (303)
..|||+.||||||+++. .|.|++ +.+.|+|.|+| +|+.+|.|.|.|||+ ||+.||+.||+.|...
T Consensus 25 ~~d~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~-AEq~AA~~AL~~L~~~ 100 (113)
T 1uil_A 25 LENAKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL-AAQSCALSLVRQLYHL 100 (113)
T ss_dssp HHHHHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHH-HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHH-HHHHHHHHHHHHHHhc
Confidence 35899999999999998 665554 24579999999 689999999999996 9999999999999765
No 33
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.26 E-value=1.6e-11 Score=93.88 Aligned_cols=63 Identities=13% Similarity=0.048 Sum_probs=52.9
Q ss_pred ccCCCccHHHHHHHhCCCcceEEEe-------ecceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHh
Q 041023 231 LKTHPVTELYEVCQKNKLKVKFVDL-------WKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297 (303)
Q Consensus 231 ~~~~Pk~~Lqe~~q~~~~~~~~~~~-------~~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~ 297 (303)
...|||+.||||||++ ..|.|++ +.+.|+|.|+|+|+.+ .|.|.|||+ ||+.||+.||+.|..
T Consensus 14 ~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~-Aeq~AA~~aL~~L~~ 83 (97)
T 2dmy_A 14 KAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKT-AKLHVAVKVLQAMGY 83 (97)
T ss_dssp CSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHH-HHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHH-HHHHHHHHHHHHhCC
Confidence 4579999999999996 3454443 2457999999999987 999999996 999999999999863
No 34
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.26 E-value=1.8e-11 Score=92.38 Aligned_cols=67 Identities=22% Similarity=0.180 Sum_probs=55.7
Q ss_pred ccCCCccHHHHHHHhCCCcceEEEee-------cceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHhhhcc
Q 041023 231 LKTHPVTELYEVCQKNKLKVKFVDLW-------KESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLLNE 301 (303)
Q Consensus 231 ~~~~Pk~~Lqe~~q~~~~~~~~~~~~-------~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~~~~ 301 (303)
+..++|+.||||||+.+ .|.|++. ++.|+|.|+|+|..+ .|.|.|||+ ||+.||+.||+.|..-.|+
T Consensus 12 ~~~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~-AEq~AA~~AL~~L~~~~~~ 85 (91)
T 2l33_A 12 LTKHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKV-AKAYAALAALEKLFPDTPL 85 (91)
T ss_dssp CCSSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHH-HHHHHHHHHHHHHCCCCCC
T ss_pred hccCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHH-HHHHHHHHHHHHHhhcCCc
Confidence 35689999999999988 4455543 346999999999885 999999996 9999999999999866554
No 35
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.14 E-value=4.6e-11 Score=93.71 Aligned_cols=60 Identities=22% Similarity=0.174 Sum_probs=50.8
Q ss_pred cCCCccHHHHHHHhCCCcceEEEe-------ecceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHhh
Q 041023 232 KTHPVTELYEVCQKNKLKVKFVDL-------WKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298 (303)
Q Consensus 232 ~~~Pk~~Lqe~~q~~~~~~~~~~~-------~~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~ 298 (303)
..|||+.||||||. |.|++ +++.|+|+|+|+|+.+ +|.|.|||+ |||+||+.||+.|...
T Consensus 36 ~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~-AEq~AA~~AL~~L~~~ 102 (114)
T 2ljh_A 36 PKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKV-ARIEAAATALRSFIQF 102 (114)
T ss_dssp CSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHH-HHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHH-HHHHHHHHHHHHHHcC
Confidence 46999999999984 44443 2457999999999999 999999996 9999999999998753
No 36
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.11 E-value=1.6e-10 Score=102.02 Aligned_cols=67 Identities=22% Similarity=0.213 Sum_probs=59.0
Q ss_pred cCCCccHHHHHHHhCCCcceEEEeec-----ceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHhhh
Q 041023 232 KTHPVTELYEVCQKNKLKVKFVDLWK-----ESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLL 299 (303)
Q Consensus 232 ~~~Pk~~Lqe~~q~~~~~~~~~~~~~-----~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~~ 299 (303)
..|||+.||||||+++...|.|++.. ..|+|.|+|+|..+|.|.|.|+|+ ||+.||+.||+.|..-+
T Consensus 21 ~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~~~F~~~v~v~g~~~~~G~G~SKK~-Aeq~AA~~aL~~L~~~~ 92 (232)
T 2yt4_A 21 GKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKL-AKNKAARATLEILIPDF 92 (232)
T ss_dssp TSCHHHHHHHHHHHTTCCCCEEEEEECSCTTSCEEEEEEETTEEEEEEEESSHHH-HHHHHHHHHHHHHSTTT
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCcEEEEEEECCEEEeecCCCCHHH-HHHHHHHHHHHHHHhhc
Confidence 46999999999999998877776642 569999999999999999999996 99999999999997643
No 37
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.08 E-value=2.3e-10 Score=82.37 Aligned_cols=60 Identities=28% Similarity=0.283 Sum_probs=49.4
Q ss_pred cCCCccHHHHHHHhCCCcceEEEee-------cceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHhh
Q 041023 232 KTHPVTELYEVCQKNKLKVKFVDLW-------KESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298 (303)
Q Consensus 232 ~~~Pk~~Lqe~~q~~~~~~~~~~~~-------~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~ 298 (303)
..||++.|||++ ..|.|++. .+.|+|+|+|+|+. ++|.|.|||+ ||+.||+.||+.|..+
T Consensus 3 ~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~-~~G~G~SKK~-Aeq~AA~~al~~L~~~ 69 (71)
T 2b7v_A 3 GKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQF-FEGSGRNKKL-AKARAAQSALATVFNL 69 (71)
T ss_dssp SSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCE-EEEEESSHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEE-EEEeeCCHHH-HHHHHHHHHHHHHHhc
Confidence 468999999993 45555542 35799999999986 5999999996 9999999999998764
No 38
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.06 E-value=1.5e-10 Score=98.26 Aligned_cols=65 Identities=25% Similarity=0.215 Sum_probs=56.2
Q ss_pred cCCCccHHHHHHHhCCCcceEEEee-------cceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHhh
Q 041023 232 KTHPVTELYEVCQKNKLKVKFVDLW-------KESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298 (303)
Q Consensus 232 ~~~Pk~~Lqe~~q~~~~~~~~~~~~-------~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~ 298 (303)
..|||+.||||||+++.. |.|++. .+.|+|.|+|+|+.+|.|.|.|||+ ||+.||+.||+.|...
T Consensus 12 ~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~-Aeq~AA~~al~~L~~~ 83 (179)
T 1qu6_A 12 AGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKE-AKNAAAKLAVEILNKE 83 (179)
T ss_dssp SCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHH-HHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEecCCCCHHH-HHHHHHHHHHHHHhcc
Confidence 568999999999999987 455443 3469999999999999999999996 9999999999999753
No 39
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=98.97 E-value=1.8e-09 Score=78.54 Aligned_cols=63 Identities=22% Similarity=0.189 Sum_probs=47.6
Q ss_pred CCccHHHHHHHhCCCcceEEEe-------ecceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHhhhc
Q 041023 234 HPVTELYEVCQKNKLKVKFVDL-------WKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLLN 300 (303)
Q Consensus 234 ~Pk~~Lqe~~q~~~~~~~~~~~-------~~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~~~ 300 (303)
+.|+.+++|++.. ..+.|++ +++.|+|.|+|+|..+ .|.|.|||+ ||+.||+.||+.|..-.|
T Consensus 5 ~~K~pl~~L~q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~-Aeq~AA~~al~~L~~~~~ 74 (75)
T 3p1x_A 5 HGKNPVMELNEKR--RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKV-AKAYAALAALEKLFPDTP 74 (75)
T ss_dssp -CCCHHHHHHHHS--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHH-HHHHHHHHHHHHHCTTCC
T ss_pred CCCCHHHHHHHcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHH-HHHHHHHHHHHHHHccCC
Confidence 4556666666664 2444443 2357999999999988 999999996 999999999999976544
No 40
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=98.74 E-value=1.3e-08 Score=86.32 Aligned_cols=65 Identities=22% Similarity=0.193 Sum_probs=55.7
Q ss_pred cCCCccHHHHHHHhCCCcceEEEee-----cceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHh
Q 041023 232 KTHPVTELYEVCQKNKLKVKFVDLW-----KESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297 (303)
Q Consensus 232 ~~~Pk~~Lqe~~q~~~~~~~~~~~~-----~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~ 297 (303)
..||++.|+|+||++++.+.|.... .+.|+|.|.|+|..++.|.|.|||+ |++.||+.||..|..
T Consensus 103 ~~n~~~~L~E~~qk~~~~~~Y~~~~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~-Ak~~AA~~al~~L~~ 172 (179)
T 1qu6_A 103 MGNYIGLINRIAQKKRLTVNYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQE-AKQLAAKLAYLQILS 172 (179)
T ss_dssp CCCCHHHHHHHHHHSCCEEEEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHH-HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCcceEEecCcCCCCCCeEEEEEEECCEEEeeEEECCHHH-HHHHHHHHHHHHHhc
Confidence 4699999999999999987554332 2468999999999899999999996 999999999999864
No 41
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=98.56 E-value=1.1e-07 Score=83.91 Aligned_cols=60 Identities=28% Similarity=0.283 Sum_probs=49.5
Q ss_pred cCCCccHHHHHHHhCCCcceEEEee-------cceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHhh
Q 041023 232 KTHPVTELYEVCQKNKLKVKFVDLW-------KESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298 (303)
Q Consensus 232 ~~~Pk~~Lqe~~q~~~~~~~~~~~~-------~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~ 298 (303)
..|||+.|||| +..|.|.+. .+.|+|.|+|+|+. +.|.|.|||+ ||+.||+.||+.|...
T Consensus 160 ~~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~-~~G~G~sKK~-Aeq~AA~~al~~L~~~ 226 (236)
T 2l3j_A 160 GKNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQF-FEGSGRNKKL-AKARAAQSALATVFNL 226 (236)
T ss_dssp SCCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEE-EEEEESSHHH-HHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEE-EEeeeCCHHH-HHHHHHHHHHHHHccc
Confidence 46999999999 345656542 35799999999986 5999999996 9999999999998653
No 42
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=98.48 E-value=1.2e-07 Score=83.57 Aligned_cols=63 Identities=17% Similarity=0.110 Sum_probs=50.7
Q ss_pred cCCCccHHHHHHHhCCCcceEEE--ee-------cceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHhhh
Q 041023 232 KTHPVTELYEVCQKNKLKVKFVD--LW-------KESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLL 299 (303)
Q Consensus 232 ~~~Pk~~Lqe~~q~~~~~~~~~~--~~-------~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~~ 299 (303)
..|||+.||| |+++++.+|.|. +. ...|+|.|. ..++.|.|.|+|+ ||+.||+.||+.|..-.
T Consensus 129 ~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~---~~~~~G~G~sKK~-Aeq~AA~~aL~~L~~~~ 200 (232)
T 2yt4_A 129 LLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG---KHTVRGWCKNKRV-GKQLASQKILQLLHPHV 200 (232)
T ss_dssp CCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET---TEEEEEEESSHHH-HHHHHHHHHHHHHSTTC
T ss_pred CCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE---EEEEEEEeCCHHH-HHHHHHHHHHHHHHhhc
Confidence 4699999999 999998888776 32 234666654 6789999999996 99999999999997643
No 43
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=98.42 E-value=4.9e-07 Score=79.85 Aligned_cols=63 Identities=19% Similarity=0.154 Sum_probs=51.1
Q ss_pred cCCCccHHHHHHHhCCCcceEEEee-------cceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHhh
Q 041023 232 KTHPVTELYEVCQKNKLKVKFVDLW-------KESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298 (303)
Q Consensus 232 ~~~Pk~~Lqe~~q~~~~~~~~~~~~-------~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~ 298 (303)
..+||+.|+++++.. ..|.|++. .+.|+|.|+|+|+. +.|.|.|||+ ||+.||+.||+.|..+
T Consensus 3 ~~~~K~~l~~l~e~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~-~~G~G~SKK~-Aeq~AA~~al~~l~~~ 72 (236)
T 2l3j_A 3 PVLPKNALMQLNEIK--PGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKK-AKLHAAEKALRSFVQF 72 (236)
T ss_dssp CCCTHHHHHHHHHHC--SSCEEEEEEEESCTTSCEEEEEEEETTEE-EEEEESHHHH-HHHHHHHHHHHHHTTC
T ss_pred CCCCcCHHHHHhhcC--CCceEEEEeccCCCCCCeEEEEEEECCEE-EEEecCChHH-HHHHHHHHHHHHHHhc
Confidence 358899999999763 34555542 35799999999987 5999999996 9999999999999764
No 44
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.01 E-value=0.25 Score=37.59 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=42.9
Q ss_pred cCCCccHHHHHHHhCCC-----c-ceEEE-eecceeEEEEEEC--CEEEEEEEeccchHHHHHHHHHHHHHHHHhh
Q 041023 232 KTHPVTELYEVCQKNKL-----K-VKFVD-LWKESTAFHIFIE--DQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298 (303)
Q Consensus 232 ~~~Pk~~Lqe~~q~~~~-----~-~~~~~-~~~~~~~v~V~i~--~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~ 298 (303)
..+||+.|...+|..-. . +-|+. ...+...|++.+. .-.--+|.|..+.+ ||.+||-.|+++|+.+
T Consensus 16 Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~t~g~k~K~~tl~l~WP~~mef~a~G~rK~e-AE~kAAA~AC~kLK~L 90 (119)
T 2db2_A 16 FPQPKNLLNSVIGRALGISHAKDKLVYVHTNGPKKKKVTLHIKWPKSVEVEGYGSKKID-AERQAAAAACQLFKGW 90 (119)
T ss_dssp CSCHHHHHHHHHHHHTTHHHHHHHEEEEECCSSSSEEEEEEECSSSCEEEEEEESSHHH-HHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHccCchhhheeEEeecCCceeEEEEEecCCCcEEEEeeccchHH-HHHHHHHHHHHHHHHc
Confidence 46899999998876422 1 12222 1122345666654 44445566666664 9999999999999987
No 45
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=91.86 E-value=1 Score=34.17 Aligned_cols=89 Identities=25% Similarity=0.206 Sum_probs=66.0
Q ss_pred ChhHHHHhhHHHHHHHHHHHHH--HhCCCCChhchHHHHHhhcChHHHHHHHHHcCchhhhhcCCcchHHHHHHHHHHhh
Q 041023 99 SYERLEYVGDSVLNLLLTKEQF--FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL 176 (303)
Q Consensus 99 ~~erLEfLGDavL~~~v~~~l~--~~~p~~~~g~Lt~lr~~lvsn~~La~~a~~~gL~~~i~~~~~~~~~~i~~~~~~~~ 176 (303)
.-.-|.-+||++++++++.-|- .-+|.-. -|-|.+|+.--..-||.+.+. ..+
T Consensus 11 tdK~LakfGDSLvNfl~SlALse~lG~Ptg~----------rVPnaSLaiale~agL~~~~p--R~D------------- 65 (133)
T 1ztd_A 11 IDKGLAKFGDSLINFLYSLALTEFLGKPTGD----------RVPNASLAIALELTGLSKNLR--RVD------------- 65 (133)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTSCCCC----------CCCHHHHHHHHHHHTGGGGCC--GGG-------------
T ss_pred hcchHHHHhHHHHHHHHHHHHHHHhCCCCCC----------CCCChHHHHHHHHhhhhhcCC--ccc-------------
Confidence 3467999999999999998774 3445322 377889988888888888771 111
Q ss_pred cCCCCCCCCCCCchhHHHHHHHHhhhhcccCCCCHHHHHHHHHHhhcc
Q 041023 177 DYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKP 224 (303)
Q Consensus 177 ~~~~~~~~~~~~~k~laD~fEAliGAIylD~G~~~~~v~~~i~~ll~~ 224 (303)
...-+|+.||+|+--|+.+-+..+.+-++++.-+.+
T Consensus 66 ------------Kh~kGd~aEA~iAyAWleG~is~eEaveilk~nl~~ 101 (133)
T 1ztd_A 66 ------------KHAKGDYAEALIAKAWLMGLISEREAVEIIKKNLYP 101 (133)
T ss_dssp ------------TTCHHHHHHHHHHHHHHTTSSCHHHHHHHHHTTCCG
T ss_pred ------------ccCccHHHHHHHHHHHHhccccHHHHHHHHHhcCcH
Confidence 134789999999999999988877777777655543
No 46
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=85.17 E-value=2.3 Score=31.88 Aligned_cols=62 Identities=11% Similarity=0.173 Sum_probs=41.0
Q ss_pred CCccHHHHHHHhCCC-----cceEEE---ee--cceeEEEEEECC-----EEEEEEEeccchHHHHHHHHHHHHHHHHhh
Q 041023 234 HPVTELYEVCQKNKL-----KVKFVD---LW--KESTAFHIFIED-----QLLGRGAYAPKKEIAHNRAAKDALNNIERL 298 (303)
Q Consensus 234 ~Pk~~Lqe~~q~~~~-----~~~~~~---~~--~~~~~v~V~i~~-----~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~ 298 (303)
+.++.|+.+|++... ..|.+. +. ...+ |+|.+-. ...|.-. .+++ .|++.||-+|++.|.++
T Consensus 5 sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~~~~~-c~v~LP~~splr~i~g~~~-~sk~-~AK~sAAf~Ac~~L~~~ 81 (102)
T 2kou_A 5 SSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTI-CRITLPANAPISEIESSLL-PSTE-AAKKDACLKAVHELHNL 81 (102)
T ss_dssp HHHHHHHHHHTTSSSCTTCCSSCEEEEEECCGGGCEE-EEEECCTTCSSCCEEEEEE-SSHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccccCccceEEEeEeecCCCeE-EEEECCCCCCCCeeeCCcc-ccHH-HHHHHHHHHHHHHHHHC
Confidence 456788888887632 224443 22 2334 7777643 3556655 5666 69999999999999875
No 47
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=56.33 E-value=4.5 Score=41.67 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=30.8
Q ss_pred eeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHh
Q 041023 259 STAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297 (303)
Q Consensus 259 ~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~ 297 (303)
.|.|.+-+-+-.+-.+.-.-||+ |||.||+.||++|+.
T Consensus 58 ~~~c~~~lp~~~~~~~~~~~kkd-~eq~aa~~al~~~g~ 95 (950)
T 3htx_A 58 LYRCHLQLPEFSVVSNVFKKKKD-SEQSAAELALDKLGI 95 (950)
T ss_dssp EEEEEEECSSCEEECCCBSCHHH-HHHHHHHHHHTTTTS
T ss_pred eEEEEeeCCCceEecchhhcccc-HHHHHHHHHHHHhCC
Confidence 36788888776666788777886 999999999999864
No 48
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=45.33 E-value=34 Score=23.15 Aligned_cols=40 Identities=10% Similarity=0.154 Sum_probs=28.4
Q ss_pred eecceeEEEEEE-CCEEEEEEEeccchHHHHHHHHHHHHHHHHhhh
Q 041023 255 LWKESTAFHIFI-EDQLLGRGAYAPKKEIAHNRAAKDALNNIERLL 299 (303)
Q Consensus 255 ~~~~~~~v~V~i-~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~~ 299 (303)
-.+..|...+.- ||+.|+.+.|.+.|. +|.++++.++.--
T Consensus 8 ~~~G~frfrLka~NGevI~sSe~Y~sk~-----~a~~gI~sVk~na 48 (64)
T 3bid_A 8 DAKGEYRWRLKAANHEIIAQGEGYTSKQ-----NCQHAVDLLKSTT 48 (64)
T ss_dssp CTTSCEEEEEECTTSCEEEECCCBSCHH-----HHHHHHHHHHTCC
T ss_pred CCCCCEEEEEEeCCCCEEEECCCcCCHH-----HHHHHHHHHHHhC
Confidence 334567777776 899999988877764 6667777776543
No 49
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=33.53 E-value=62 Score=26.52 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=31.6
Q ss_pred EEEeecceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHhh
Q 041023 252 FVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298 (303)
Q Consensus 252 ~~~~~~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~ 298 (303)
++++.++.-++-++..|+.+.+|. .|..+ |+. |++...+.|+++
T Consensus 43 i~R~~~Pk~~~lIF~SGKiv~TGa-ks~e~-~~~-a~~~i~~~L~~l 86 (180)
T 1ytb_A 43 IMRIREPKTTALIFASGKMVVTGA-KSEDD-SKL-ASRKYARIIQKI 86 (180)
T ss_dssp EEEETTTTEEEEECTTSEEEEEEE-SSHHH-HHH-HHHHHHHHHHHH
T ss_pred EEEeCCCcEEEEEECCCeEEEEec-CCHHH-HHH-HHHHHHHHHHHc
Confidence 455666667888999999999994 45543 654 777777777765
No 50
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=31.30 E-value=1e+02 Score=26.52 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=32.0
Q ss_pred EEEeecceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHhh
Q 041023 252 FVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298 (303)
Q Consensus 252 ~~~~~~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~ 298 (303)
++++.++.-++-++..|+.+.+|. .|..+ |+. |++..++.|+++
T Consensus 103 i~Rl~~Pk~t~lIF~SGKiV~TGa-ks~e~-a~~-A~~~i~~~L~~l 146 (240)
T 1rm1_A 103 IMRIREPKTTALIFASGKMVVTGA-KSEDD-SKL-ASRKYARIIQKI 146 (240)
T ss_dssp EEEEETTEEEEEEETTSEEEEEEE-SSHHH-HHH-HHHHHHHHHHHH
T ss_pred EEEeCCCcEEEEEECCCeEEEEec-CCHHH-HHH-HHHHHHHHHHHc
Confidence 455666777889999999999994 45543 654 777777777665
No 51
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=29.22 E-value=77 Score=26.88 Aligned_cols=44 Identities=23% Similarity=0.304 Sum_probs=32.3
Q ss_pred EEEeecceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHhh
Q 041023 252 FVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298 (303)
Q Consensus 252 ~~~~~~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~ 298 (303)
++++.++.-++-++..|+.+-+|. .|..+ |+. |++...+.|+++
T Consensus 81 v~Rl~~Pk~t~LIF~SGKiV~TGA-kS~e~-a~~-A~~ki~~~L~~l 124 (218)
T 3eik_A 81 IMRIREPKTTALIFASGKMVITGA-KSEKS-SRM-AAQRYAKIIHKL 124 (218)
T ss_dssp EEEETTTTEEEEECTTSEEEEEEE-SSHHH-HHH-HHHHHHHHHHHT
T ss_pred EEEecCCcEEEEEECCCeEEEEec-CCHHH-HHH-HHHHHHHHHHHc
Confidence 455666667888999999999994 55553 665 777777777765
No 52
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.75 E-value=27 Score=24.27 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhCCCCChhchHHHHHhhcChHHHHHHHHHcCchhhhh
Q 041023 111 LNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158 (303)
Q Consensus 111 L~~~v~~~l~~~~p~~~~g~Lt~lr~~lvsn~~La~~a~~~gL~~~i~ 158 (303)
+++-+-..|-++||..+++.++.....-.+|.-.+.-...-...+|+-
T Consensus 9 ~d~qvfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~qES~kYLY 56 (75)
T 2dae_A 9 IDFQVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQESTRYLY 56 (75)
T ss_dssp CCHHHHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHHHhccccee
Confidence 355667788999999999999988877777765555444444444443
No 53
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=27.67 E-value=87 Score=25.83 Aligned_cols=43 Identities=26% Similarity=0.283 Sum_probs=31.0
Q ss_pred EEeecceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHhh
Q 041023 253 VDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298 (303)
Q Consensus 253 ~~~~~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~ 298 (303)
+++.++.-++.++-.|+.+.+|. .|..+ |+. |++...+.|+++
T Consensus 52 ~Rl~~Pk~t~lIF~SGKiv~TGA-kS~e~-a~~-a~~~~~~~L~~l 94 (188)
T 2z8u_A 52 CRLSVPKVALLIFRSGKVNCTGA-KSKEE-AEI-AIKKIIKELKDA 94 (188)
T ss_dssp EEETTTTEEEEECTTSEEEEEEE-SSHHH-HHH-HHHHHHHHHHHT
T ss_pred EEcCCCcEEEEEeCCCeEEEecC-CCHHH-HHH-HHHHHHHHHHhc
Confidence 44555666788899999999995 45543 665 777777777766
No 54
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=24.68 E-value=1e+02 Score=25.21 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=31.7
Q ss_pred EEEeecceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHhh
Q 041023 252 FVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298 (303)
Q Consensus 252 ~~~~~~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~ 298 (303)
++++.++.-++.++..|+.+-+|. .|..+ |+. |++...+.|+++
T Consensus 47 i~Rl~~P~~t~lIF~SGKiv~TGa-kS~~~-~~~-a~~~i~~~L~~l 90 (182)
T 1ais_A 47 ICHLDDPKVALLIFSSGKLVVTGA-KSVQD-IER-AVAKLAQKLKSI 90 (182)
T ss_dssp EEECSSSCCEEEECTTSEEEEEEE-SSHHH-HHH-HHHHHHHHHHHT
T ss_pred EEEcCCCcEEEEEeCCCeEEEecC-CCHHH-HHH-HHHHHHHHHHHc
Confidence 344555666888999999999995 45543 665 777777788776
No 55
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=23.03 E-value=60 Score=21.21 Aligned_cols=19 Identities=21% Similarity=0.489 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhhhccc
Q 041023 284 HNRAAKDALNNIERLLNEK 302 (303)
Q Consensus 284 e~~AA~~AL~~l~~~~~~~ 302 (303)
+..--+++++.|+.|||++
T Consensus 8 ~~~e~~~~~~~L~~MFP~l 26 (54)
T 1p3q_Q 8 EENERKDTLNTLQNMFPDM 26 (54)
T ss_dssp HHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHHcccC
Confidence 3445678999999999986
No 56
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=23.02 E-value=47 Score=24.60 Aligned_cols=43 Identities=7% Similarity=0.079 Sum_probs=30.8
Q ss_pred HHHHHHHHHhC---CCCChhchHHHHHhhcChHHHHHHHHHcCchhhh
Q 041023 113 LLLTKEQFFLY---PNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157 (303)
Q Consensus 113 ~~v~~~l~~~~---p~~~~g~Lt~lr~~lvsn~~La~~a~~~gL~~~i 157 (303)
.-+++|+..+. +.++-.+|. +..-||..++.++|+++|+..|-
T Consensus 20 ~~ia~yil~~~~~~~~~si~elA--~~~~vS~aTv~Rf~kkLGf~gf~ 65 (107)
T 3iwf_A 20 KKIAQFILNYPHKVVNMTSQEIA--NQLETSSTSIIRLSKKVTPGGFN 65 (107)
T ss_dssp HHHHHHHHHCHHHHTTCCHHHHH--HHHTSCHHHHHHHHHHHSTTHHH
T ss_pred HHHHHHHHhCHHHHHHCCHHHHH--HHHCCCHHHHHHHHHHhCCCCHH
Confidence 34555565542 445555554 56889999999999999999874
No 57
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=22.63 E-value=93 Score=25.87 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=31.8
Q ss_pred EEEeecceeEEEEEECCEEEEEEEeccchHHHHHHHHHHHHHHHHhh
Q 041023 252 FVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298 (303)
Q Consensus 252 ~~~~~~~~~~v~V~i~~~~ig~G~g~skk~~Ae~~AA~~AL~~l~~~ 298 (303)
++++.++.-++.++..|+.+.+|. .|..+ |+. |++...+.|+++
T Consensus 51 i~Rl~~Pk~t~lIF~SGKiv~TGa-kS~e~-a~~-a~~~i~~~L~~l 94 (198)
T 1mp9_A 51 IFRLESPKITSLIFKSGKMVVTGA-KSTDE-LIK-AVKRIIKTLKKY 94 (198)
T ss_dssp EEEETTTTEEEEECTTSEEEEECC-SSHHH-HHH-HHHHHHHHHHHT
T ss_pred EEEcCCCceEEEEeCCCeEEEecc-CCHHH-HHH-HHHHHHHHHHHc
Confidence 345556667888999999999984 45543 665 777777777775
Done!