BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041025
(99 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|357494721|ref|XP_003617649.1| Nuclear ribonuclease Z [Medicago truncatula]
gi|355518984|gb|AET00608.1| Nuclear ribonuclease Z [Medicago truncatula]
Length = 412
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 19/62 (30%)
Query: 18 EEEKSGRGMQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMD 58
E +K +G+ ++G +VEGLSI P R++S++FL SHAHMD
Sbjct: 12 ESKKKSKGLNIEGYQVEGLSIGGHETCVIFSNFRVAFDIGRCPPRAVSMDFLLISHAHMD 71
Query: 59 HI 60
HI
Sbjct: 72 HI 73
>gi|388522475|gb|AFK49299.1| unknown [Medicago truncatula]
Length = 335
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 19/62 (30%)
Query: 18 EEEKSGRGMQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMD 58
E +K +G+ ++G +VEGLSI P R++S++FL SHAHMD
Sbjct: 54 ESKKKSKGLNIEGYQVEGLSIGGHETCVVFSHFRVAFDIGRCPPRAVSMDFLLISHAHMD 113
Query: 59 HI 60
HI
Sbjct: 114 HI 115
>gi|225456689|ref|XP_002273058.1| PREDICTED: nuclear ribonuclease Z isoform 1 [Vitis vinifera]
Length = 290
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 19/59 (32%)
Query: 21 KSGRGMQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
K +G+Q++G VEGLSI P R+IS +FLF SH HMDHI
Sbjct: 12 KKEKGIQIEGYPVEGLSIGGQETCIILPSLKLAFDIGRCPQRAISQDFLFISHGHMDHI 70
>gi|297734015|emb|CBI15262.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 19/59 (32%)
Query: 21 KSGRGMQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
K +G+Q++G VEGLSI P R+IS +FLF SH HMDHI
Sbjct: 52 KKEKGIQIEGYPVEGLSIGGQETCIILPSLKLAFDIGRCPQRAISQDFLFISHGHMDHI 110
>gi|5882718|gb|AAD55271.1|AC008263_2 ESTs gb|AA067482 and gb|AI100542 come from this gene [Arabidopsis
thaliana]
Length = 290
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 19/56 (33%)
Query: 24 RGMQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
+ MQ++G +EGLSI P R+IS +FLF SH+HMDHI
Sbjct: 5 KAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHI 60
>gi|297839343|ref|XP_002887553.1| hypothetical protein ARALYDRAFT_476606 [Arabidopsis lyrata subsp.
lyrata]
gi|297333394|gb|EFH63812.1| hypothetical protein ARALYDRAFT_476606 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 19/56 (33%)
Query: 24 RGMQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
+ MQ++G +EGLSI P R+IS +FLF SH+HMDHI
Sbjct: 5 KAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHI 60
>gi|30699037|ref|NP_177608.2| nuclear ribonuclease Z [Arabidopsis thaliana]
gi|88984765|sp|Q8LGU7.3|RNZN_ARATH RecName: Full=Nuclear ribonuclease Z; Short=RNase Z; AltName:
Full=Zinc phosphodiesterase NUZ; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|20975609|emb|CAD22100.1| RNase Z [Arabidopsis thaliana]
gi|90962972|gb|ABE02410.1| At1g74700 [Arabidopsis thaliana]
gi|332197502|gb|AEE35623.1| nuclear ribonuclease Z [Arabidopsis thaliana]
Length = 280
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 19/56 (33%)
Query: 24 RGMQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
+ MQ++G +EGLSI P R+IS +FLF SH+HMDHI
Sbjct: 5 KAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHI 60
>gi|12324792|gb|AAG52354.1|AC011765_6 unknown protein; 121665-123450 [Arabidopsis thaliana]
Length = 281
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 19/56 (33%)
Query: 24 RGMQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
+ MQ++G +EGLSI P R+IS +FLF SH+HMDHI
Sbjct: 5 KAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHI 60
>gi|116785148|gb|ABK23610.1| unknown [Picea sitchensis]
Length = 291
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 19/56 (33%)
Query: 24 RGMQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
RG Q+ G +EGLSI P R+I+ +FLF SH HMDHI
Sbjct: 16 RGRQIAGYSIEGLSIGGQETCVIVPTLNMAFDIGRCPPRAIAQDFLFISHGHMDHI 71
>gi|388493940|gb|AFK35036.1| unknown [Lotus japonicus]
Length = 210
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 19/77 (24%)
Query: 3 DCSTAVELQNGHEAKEEEKSGRGMQVQGCKVEGLSIAS-------------------PSR 43
+ S A++ + ++ + + +G+ ++G +EGLSI P+R
Sbjct: 50 NISKAIDYEEQYKLAKSQVHRKGLNLEGYSIEGLSIGGQETCIIIHEFKCAFDIGRCPTR 109
Query: 44 SISLNFLFTSHAHMDHI 60
+I NF+F +HAH+DHI
Sbjct: 110 AIHQNFVFITHAHLDHI 126
>gi|225447197|ref|XP_002277241.1| PREDICTED: ribonuclease Z, chloroplastic [Vitis vinifera]
gi|297739240|emb|CBI28891.3| unnamed protein product [Vitis vinifera]
Length = 354
Score = 42.7 bits (99), Expect = 0.031, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 19/73 (26%)
Query: 7 AVELQNGHEAKEEEKSGRGMQVQGCKVEGLSIAS-------------------PSRSISL 47
A+E + + E + G+ ++G +EG+SI PSR+I
Sbjct: 57 AIEEEEEYRKARAEVARNGVDLEGYSIEGISIGGHETCVIIPELKSAFDIGRCPSRAIQQ 116
Query: 48 NFLFTSHAHMDHI 60
NFLF +HAH+DHI
Sbjct: 117 NFLFITHAHLDHI 129
>gi|168067069|ref|XP_001785449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662955|gb|EDQ49751.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 295
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 23/66 (34%)
Query: 18 EEEKSGR----GMQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSH 54
E+ K GR ++V G +EG+S+ P R+IS +FLF SH
Sbjct: 10 EQLKLGRSKTGALEVDGLSIEGVSVGGQETCILIPALKLAFDIGRCPERAISQDFLFISH 69
Query: 55 AHMDHI 60
AHMDHI
Sbjct: 70 AHMDHI 75
>gi|357494723|ref|XP_003617650.1| Nuclear ribonuclease Z [Medicago truncatula]
gi|355518985|gb|AET00609.1| Nuclear ribonuclease Z [Medicago truncatula]
Length = 102
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 19/81 (23%)
Query: 2 IDCSTAVELQNGHEAKEEEKSGRGMQVQGCKVEGLSIAS-------------------PS 42
++ T +L++G E +K +G+ ++G +VE LSI P
Sbjct: 1 MELGTEKKLKSGSSETESKKKSKGLNIEGYQVESLSIGGHEICVIFSNFRIAFDIGRCPP 60
Query: 43 RSISLNFLFTSHAHMDHIFTL 63
R +S++FL SHAHM HI +
Sbjct: 61 RFVSMDFLLISHAHMFHIVSF 81
>gi|255576109|ref|XP_002528949.1| ribonuclease z, chloroplast, putative [Ricinus communis]
gi|223531595|gb|EEF33423.1| ribonuclease z, chloroplast, putative [Ricinus communis]
Length = 361
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 25/71 (35%)
Query: 15 EAKEEEKSGR------GMQVQGCKVEGLSIAS-------------------PSRSISLNF 49
E +EE + R G+ ++G +EGLSI PSR+I NF
Sbjct: 66 EEEEEYRKARAAVIRKGIDLEGYSIEGLSIGGQETCLIIPEFKCAFDIGRCPSRAIHQNF 125
Query: 50 LFTSHAHMDHI 60
+F +HAH+DHI
Sbjct: 126 VFITHAHLDHI 136
>gi|356575345|ref|XP_003555802.1| PREDICTED: nuclear ribonuclease Z-like [Glycine max]
Length = 279
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 19/58 (32%)
Query: 22 SGRGMQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
+G+ ++++G V GLSI P R++S NFL +HAHMDHI
Sbjct: 2 TGKDLEIEGYTVGGLSIGGHETCVIFPTLKVAFDIGRCPPRAVSQNFLLITHAHMDHI 59
>gi|357493079|ref|XP_003616828.1| Nuclear ribonuclease Z [Medicago truncatula]
gi|355518163|gb|AES99786.1| Nuclear ribonuclease Z [Medicago truncatula]
Length = 357
Score = 41.2 bits (95), Expect = 0.080, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 19/77 (24%)
Query: 3 DCSTAVELQNGHEAKEEEKSGRGMQVQGCKVEGLSIAS-------------------PSR 43
+ S A++ + + + + +G+ ++G +EG+SI P+R
Sbjct: 56 EISKAIDYEEQYRVAKSQVQRKGLDLEGYSIEGVSIGGHETCIIIPEFKCAFDIGRCPTR 115
Query: 44 SISLNFLFTSHAHMDHI 60
+I NF+F +HAH+DHI
Sbjct: 116 AIHQNFVFITHAHLDHI 132
>gi|224124030|ref|XP_002330087.1| predicted protein [Populus trichocarpa]
gi|222871221|gb|EEF08352.1| predicted protein [Populus trichocarpa]
Length = 272
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 19/52 (36%)
Query: 28 VQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
++G VEGLSI P R+IS +FLF SHAHMDHI
Sbjct: 1 IEGYPVEGLSIGGHETCIIFSSLNMAFDIGRCPQRAISQDFLFISHAHMDHI 52
>gi|363806948|ref|NP_001242565.1| uncharacterized protein LOC100807082 [Glycine max]
gi|255636804|gb|ACU18735.1| unknown [Glycine max]
Length = 353
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 19/77 (24%)
Query: 3 DCSTAVELQNGHEAKEEEKSGRGMQVQGCKVEGLSIAS-------------------PSR 43
+ S ++ + + + S + + ++G +EGLS+ PSR
Sbjct: 52 EISKVIDHEEQYRVARSQVSRKVLDLEGYSIEGLSVGGQETCIIIPEFKCSFDIGRCPSR 111
Query: 44 SISLNFLFTSHAHMDHI 60
+I NFLF +HAH+DHI
Sbjct: 112 AIQQNFLFITHAHLDHI 128
>gi|356501243|ref|XP_003519435.1| PREDICTED: ribonuclease Z, chloroplastic-like [Glycine max]
Length = 354
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 19/77 (24%)
Query: 3 DCSTAVELQNGHEAKEEEKSGRGMQVQGCKVEGLSIAS-------------------PSR 43
+ S A++ + + + + + + ++G +EGLS+ PSR
Sbjct: 53 EISKAIDHEEQYRLARSQVNRKVLDLEGYSIEGLSVGGQETCIIIPEFKCTFDIGRCPSR 112
Query: 44 SISLNFLFTSHAHMDHI 60
+I NFLF +HAH+DHI
Sbjct: 113 AIQQNFLFITHAHLDHI 129
>gi|449466917|ref|XP_004151172.1| PREDICTED: nuclear ribonuclease Z-like [Cucumis sativus]
gi|449515384|ref|XP_004164729.1| PREDICTED: nuclear ribonuclease Z-like [Cucumis sativus]
Length = 352
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 19/56 (33%)
Query: 24 RGMQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
+G+Q++G ++GLSI P ++IS +FLF SH HMDHI
Sbjct: 22 KGIQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKAISQDFLFISHGHMDHI 77
>gi|41017597|sp|P60193.1|RNZN_WHEAT RecName: Full=Nuclear ribonuclease Z; Short=RNase Z; AltName:
Full=Zinc phosphodiesterase ELAC; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
Length = 176
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 19/54 (35%)
Query: 26 MQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
++++G VEG+SI P R+++ +FLF SHAH+DHI
Sbjct: 7 LEIEGYPVEGISIGGHETCVIFPTLSLAFDIGRCPQRAVAQDFLFISHAHLDHI 60
>gi|242060950|ref|XP_002451764.1| hypothetical protein SORBIDRAFT_04g007440 [Sorghum bicolor]
gi|241931595|gb|EES04740.1| hypothetical protein SORBIDRAFT_04g007440 [Sorghum bicolor]
Length = 320
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 19/59 (32%)
Query: 26 MQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHIFTLLV 65
++++G VEG+SIA P ++S +FLF SHAHMDHI L V
Sbjct: 41 LEIEGYHVEGISIAGHETCVMFPSLNLAFDIGRCPPLAVSQDFLFVSHAHMDHIGGLPV 99
>gi|255540937|ref|XP_002511533.1| ribonuclease z, chloroplast, putative [Ricinus communis]
gi|223550648|gb|EEF52135.1| ribonuclease z, chloroplast, putative [Ricinus communis]
Length = 269
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 19/54 (35%)
Query: 26 MQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
M ++ +EGLSI P R+IS +FLF SHAHMDHI
Sbjct: 1 MTIEEYPIEGLSIGGHETCIILPSLNLAFDIGRCPQRAISQDFLFISHAHMDHI 54
>gi|357140188|ref|XP_003571652.1| PREDICTED: nuclear ribonuclease Z-like [Brachypodium distachyon]
Length = 306
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 19/54 (35%)
Query: 26 MQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
++++G VEG+SI P R++S +FLF SHAH+DHI
Sbjct: 33 LEIEGYPVEGISIGGQETCVIFPTLSLAFDIGRCPQRAVSQDFLFISHAHLDHI 86
>gi|449444739|ref|XP_004140131.1| PREDICTED: ribonuclease Z, chloroplastic-like [Cucumis sativus]
Length = 347
Score = 38.5 bits (88), Expect = 0.57, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 19/56 (33%)
Query: 24 RGMQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
+G+ ++G +EG+S+ PSR+I NF+F +HAH+DHI
Sbjct: 68 KGVDLEGYSIEGISVGGQETCVIIPEFKCAFDIGRCPSRAIQQNFVFITHAHLDHI 123
>gi|125581291|gb|EAZ22222.1| hypothetical protein OsJ_05878 [Oryza sativa Japonica Group]
Length = 270
Score = 38.5 bits (88), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 19/54 (35%)
Query: 26 MQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
+ V+G VEG+SI P R++S FLF SHAH+DHI
Sbjct: 29 LTVEGYPVEGISIGGQETCVIFPTLSAAFDIGRCPQRAVSQEFLFISHAHLDHI 82
>gi|449481110|ref|XP_004156084.1| PREDICTED: ribonuclease Z, chloroplastic-like [Cucumis sativus]
Length = 347
Score = 38.1 bits (87), Expect = 0.63, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 19/56 (33%)
Query: 24 RGMQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
+G+ ++G +EG+S+ PSR+I NF+F +HAH+DHI
Sbjct: 68 KGVDLEGYSIEGISVGGQETCVIIPEFKCAFDIGRCPSRAIQQNFVFITHAHLDHI 123
>gi|242064700|ref|XP_002453639.1| hypothetical protein SORBIDRAFT_04g009740 [Sorghum bicolor]
gi|241933470|gb|EES06615.1| hypothetical protein SORBIDRAFT_04g009740 [Sorghum bicolor]
Length = 315
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 19/75 (25%)
Query: 5 STAVELQNGHEAKEEEKSGRGMQVQGCKVEGLSIAS-------------------PSRSI 45
S++ L + K+ M+++G V+G+SI P R++
Sbjct: 14 SSSSPLTPASASATRPKAKHRMEIEGYPVDGVSIGGQETCVIFPTLSLAFDIGRCPQRAV 73
Query: 46 SLNFLFTSHAHMDHI 60
S FLF SH H+DHI
Sbjct: 74 SQEFLFVSHGHLDHI 88
>gi|115445001|ref|NP_001046280.1| Os02g0214300 [Oryza sativa Japonica Group]
gi|49387940|dbj|BAD25038.1| putative nuclear ribonuclease Z [Oryza sativa Japonica Group]
gi|113535811|dbj|BAF08194.1| Os02g0214300 [Oryza sativa Japonica Group]
gi|125538607|gb|EAY85002.1| hypothetical protein OsI_06362 [Oryza sativa Indica Group]
Length = 302
Score = 37.7 bits (86), Expect = 0.78, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 19/54 (35%)
Query: 26 MQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
+ V+G VEG+SI P R++S FLF SHAH+DHI
Sbjct: 29 LTVEGYPVEGISIGGQETCVIFPTLSAAFDIGRCPQRAVSQEFLFISHAHLDHI 82
>gi|302764956|ref|XP_002965899.1| hypothetical protein SELMODRAFT_167717 [Selaginella
moellendorffii]
gi|300166713|gb|EFJ33319.1| hypothetical protein SELMODRAFT_167717 [Selaginella
moellendorffii]
Length = 299
Score = 37.7 bits (86), Expect = 0.88, Method: Composition-based stats.
Identities = 14/20 (70%), Positives = 17/20 (85%)
Query: 41 PSRSISLNFLFTSHAHMDHI 60
P R+IS +FLF SH+HMDHI
Sbjct: 59 PQRAISQDFLFISHSHMDHI 78
>gi|20975607|emb|CAD22099.1| RNase Z [Arabidopsis thaliana]
Length = 354
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 19/77 (24%)
Query: 3 DCSTAVELQNGHEAKEEEKSGRGMQVQGCKVEGLSIAS-------------------PSR 43
S A+E + + + +G++++ +EG+S+ PSR
Sbjct: 53 SISRAIEEEEEYRKARAAVNRKGVELESYAIEGISVGGHETCVIVPELKCVFDIVRCPSR 112
Query: 44 SISLNFLFTSHAHMDHI 60
+I FLF +HAH+DHI
Sbjct: 113 AIQQKFLFITHAHLDHI 129
>gi|224131708|ref|XP_002321158.1| predicted protein [Populus trichocarpa]
gi|222861931|gb|EEE99473.1| predicted protein [Populus trichocarpa]
Length = 366
Score = 37.7 bits (86), Expect = 0.91, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 19/73 (26%)
Query: 7 AVELQNGHEAKEEEKSGRGMQVQGCKVEGLSIAS-------------------PSRSISL 47
A+E + + +G+ + G +EGLSI P+R+I
Sbjct: 69 AIEEEEDYRKARAAVIRKGIDLGGYAIEGLSIGGQETCIIIPEFKCAFDIGRCPTRAIHQ 128
Query: 48 NFLFTSHAHMDHI 60
NF+F +HAH+DHI
Sbjct: 129 NFVFITHAHLDHI 141
>gi|297831528|ref|XP_002883646.1| hypothetical protein ARALYDRAFT_480092 [Arabidopsis lyrata subsp.
lyrata]
gi|297329486|gb|EFH59905.1| hypothetical protein ARALYDRAFT_480092 [Arabidopsis lyrata subsp.
lyrata]
Length = 353
Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 19/76 (25%)
Query: 4 CSTAVELQNGHEAKEEEKSGRGMQVQGCKVEGLSIAS-------------------PSRS 44
S A+E + + + +G++++ +EG+S+ PSR+
Sbjct: 53 ISRAIEEEEEYRKARAAVNRKGVELESYAIEGISVGGHETCVIVPELKCVFDIGRCPSRA 112
Query: 45 ISLNFLFTSHAHMDHI 60
I FLF +HAH+DHI
Sbjct: 113 IQQKFLFITHAHLDHI 128
>gi|22325471|ref|NP_178532.2| Ribonuclease Z [Arabidopsis thaliana]
gi|41017757|sp|Q8L633.1|RNZC_ARATH RecName: Full=Ribonuclease Z, chloroplastic; Short=RNase Z;
AltName: Full=Zinc phosphodiesterase CPZ; AltName:
Full=tRNA 3 endonuclease; AltName: Full=tRNase Z; Flags:
Precursor
gi|20466197|gb|AAM20416.1| unknown protein [Arabidopsis thaliana]
gi|24899839|gb|AAN65134.1| unknown protein [Arabidopsis thaliana]
gi|330250749|gb|AEC05843.1| Ribonuclease Z [Arabidopsis thaliana]
Length = 354
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 19/76 (25%)
Query: 4 CSTAVELQNGHEAKEEEKSGRGMQVQGCKVEGLSIAS-------------------PSRS 44
S A+E + + + +G++++ +EG+S+ PSR+
Sbjct: 54 ISRAIEEEEEYRKARAAVNRKGVELESYAIEGISVGGHETCVIVPELKCVFDIGRCPSRA 113
Query: 45 ISLNFLFTSHAHMDHI 60
I FLF +HAH+DHI
Sbjct: 114 IQQKFLFITHAHLDHI 129
>gi|302802780|ref|XP_002983144.1| hypothetical protein SELMODRAFT_117445 [Selaginella
moellendorffii]
gi|300149297|gb|EFJ15953.1| hypothetical protein SELMODRAFT_117445 [Selaginella
moellendorffii]
Length = 308
Score = 37.7 bits (86), Expect = 0.97, Method: Composition-based stats.
Identities = 14/20 (70%), Positives = 17/20 (85%)
Query: 41 PSRSISLNFLFTSHAHMDHI 60
P R+IS +FLF SH+HMDHI
Sbjct: 59 PQRAISQDFLFISHSHMDHI 78
>gi|443327481|ref|ZP_21056105.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Xenococcus sp. PCC 7305]
gi|442792910|gb|ELS02373.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Xenococcus sp. PCC 7305]
Length = 548
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 31 CKVEGLSIASPSRSISLNFLFTSHAHMDHIFTLLVLH 67
C V A+ S ++ + F+F SHAH DH LL LH
Sbjct: 44 CGVTSFPFANESNTLPIEFVFCSHAHQDHCRGLLALH 80
>gi|4587599|gb|AAD25827.1| hypothetical protein [Arabidopsis thaliana]
Length = 356
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 19/75 (25%)
Query: 5 STAVELQNGHEAKEEEKSGRGMQVQGCKVEGLSIAS-------------------PSRSI 45
S A+E + + + +G++++ +EG+S+ PSR+I
Sbjct: 55 SRAIEEEEEYRKARAAVNRKGVELESYAIEGISVGGHETCVIVPELKCVFDIGRCPSRAI 114
Query: 46 SLNFLFTSHAHMDHI 60
FLF +HAH+DHI
Sbjct: 115 QQKFLFITHAHLDHI 129
>gi|414885981|tpg|DAA61995.1| TPA: hypothetical protein ZEAMMB73_377552 [Zea mays]
Length = 166
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 25/84 (29%)
Query: 24 RGMQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHIFT-- 62
+G++V+G +EG+S+ P ++S ++LF +HAH+DHI +
Sbjct: 77 KGVEVEGYAIEGISVGGHETCITVPSLNVAFDIGRGPQFAVSQDYLFITHAHLDHIVSAT 136
Query: 63 ----LLVLHIWRYSKNKFQPLKEK 82
+ I ++ + PL K
Sbjct: 137 GPVFIFAGSISAFALFAYTPLTPK 160
>gi|414885984|tpg|DAA61998.1| TPA: hypothetical protein ZEAMMB73_377552 [Zea mays]
Length = 248
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 19/59 (32%)
Query: 24 RGMQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHIFTL 63
+G++V+G +EG+S+ P ++S ++LF +HAH+DHI L
Sbjct: 77 KGVEVEGYAIEGISVGGHETCITVPSLNVAFDIGRGPQFAVSQDYLFITHAHLDHIGGL 135
>gi|194699558|gb|ACF83863.1| unknown [Zea mays]
gi|414885982|tpg|DAA61996.1| TPA: hypothetical protein ZEAMMB73_377552 [Zea mays]
Length = 279
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 19/56 (33%)
Query: 24 RGMQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
+G++V+G +EG+S+ P ++S ++LF +HAH+DHI
Sbjct: 77 KGVEVEGYAIEGISVGGHETCITVPSLNVAFDIGRGPQFAVSQDYLFITHAHLDHI 132
>gi|413925891|gb|AFW65823.1| hypothetical protein ZEAMMB73_730401 [Zea mays]
gi|413925892|gb|AFW65824.1| hypothetical protein ZEAMMB73_730401 [Zea mays]
Length = 197
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 19/57 (33%)
Query: 26 MQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHIFTL 63
++++G V+G+SI P R++S FLF SH H+DHI L
Sbjct: 29 IEIEGYPVDGVSIGGQETCVIFPTLSLAFDIGRCPQRAVSQEFLFVSHGHLDHIGGL 85
>gi|226492918|ref|NP_001152148.1| LOC100285786 [Zea mays]
gi|195653199|gb|ACG46067.1| nuclear ribonuclease Z [Zea mays]
Length = 302
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 19/59 (32%)
Query: 21 KSGRGMQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
K+ ++++G V+G+SI P R++S FLF SH H+DHI
Sbjct: 24 KAKHRIEIEGYPVDGVSIGGQETCVIFPTLSLAFDIGRCPQRAVSQEFLFVSHGHLDHI 82
>gi|224034447|gb|ACN36299.1| unknown [Zea mays]
Length = 197
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 19/57 (33%)
Query: 26 MQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHIFTL 63
++++G V+G+SI P R++S FLF SH H+DHI L
Sbjct: 29 IEIEGYPVDGVSIGGQETCVIFPTLSLAFDIGRCPQRAVSQEFLFVSHGHLDHIGGL 85
>gi|194699324|gb|ACF83746.1| unknown [Zea mays]
gi|413925893|gb|AFW65825.1| nuclear ribonuclease Z [Zea mays]
Length = 302
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 19/59 (32%)
Query: 21 KSGRGMQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
K+ ++++G V+G+SI P R++S FLF SH H+DHI
Sbjct: 24 KAKHRIEIEGYPVDGVSIGGQETCVIFPTLSLAFDIGRCPQRAVSQEFLFVSHGHLDHI 82
>gi|414885985|tpg|DAA61999.1| TPA: nuclear ribonuclease Z [Zea mays]
Length = 442
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 19/56 (33%)
Query: 24 RGMQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
+G++V+G +EG+S+ P ++S ++LF +HAH+DHI
Sbjct: 77 KGVEVEGYAIEGISVGGHETCITVPSLNVAFDIGRGPQFAVSQDYLFITHAHLDHI 132
>gi|330865263|gb|AEC46979.1| flagellin, partial [Borrelia microti]
Length = 239
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 10 LQNGHEAKEEEKSGRGMQVQG---CKVEGLSIASPSRSISLNFLFTSHAHMDHIFTLLV 65
L +GH GM V G ++ GLS AS + S ++NF+ T+ ++D + +LV
Sbjct: 21 LSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNLDEVEKVLV 79
>gi|119494059|ref|ZP_01624611.1| hypothetical protein L8106_04196 [Lyngbya sp. PCC 8106]
gi|119452196|gb|EAW33398.1| hypothetical protein L8106_04196 [Lyngbya sp. PCC 8106]
Length = 518
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 31 CKVEGLS--IASPSRSISLNFLFTSHAHMDHIFTLLVLH 67
C ++ +S +A+ RS +F+F +HAH DH LL LH
Sbjct: 13 CGIQDISPLLATSKRSQPADFVFCTHAHADHAIGLLALH 51
>gi|414885983|tpg|DAA61997.1| TPA: hypothetical protein ZEAMMB73_377552 [Zea mays]
Length = 388
Score = 35.4 bits (80), Expect = 4.8, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 19/56 (33%)
Query: 24 RGMQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
+G++V+G +EG+S+ P ++S ++LF +HAH+DHI
Sbjct: 77 KGVEVEGYAIEGISVGGHETCITVPSLNVAFDIGRGPQFAVSQDYLFITHAHLDHI 132
>gi|242049624|ref|XP_002462556.1| hypothetical protein SORBIDRAFT_02g028070 [Sorghum bicolor]
gi|241925933|gb|EER99077.1| hypothetical protein SORBIDRAFT_02g028070 [Sorghum bicolor]
Length = 359
Score = 35.4 bits (80), Expect = 5.0, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 19/56 (33%)
Query: 24 RGMQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
+G++V+G VEG+S+ P ++S ++LF +HAH+DHI
Sbjct: 79 KGVEVEGYAVEGISVGGHETCVTVPSLNVAFDIGRGPQFAVSQDYLFITHAHLDHI 134
>gi|219362919|ref|NP_001136933.1| nuclear ribonuclease Z [Zea mays]
gi|194697676|gb|ACF82922.1| unknown [Zea mays]
gi|414885986|tpg|DAA62000.1| TPA: nuclear ribonuclease Z [Zea mays]
Length = 492
Score = 35.0 bits (79), Expect = 5.4, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 19/56 (33%)
Query: 24 RGMQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
+G++V+G +EG+S+ P ++S ++LF +HAH+DHI
Sbjct: 77 KGVEVEGYAIEGISVGGHETCITVPSLNVAFDIGRGPQFAVSQDYLFITHAHLDHI 132
>gi|195656759|gb|ACG47847.1| nuclear ribonuclease Z [Zea mays]
Length = 357
Score = 35.0 bits (79), Expect = 5.8, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 19/56 (33%)
Query: 24 RGMQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
+G++V+G +EG+S+ P ++S ++LF +HAH+DHI
Sbjct: 77 KGVEVEGYAIEGISVGGHETCITVPSLNVAFDIGRGPQFAVSQDYLFITHAHLDHI 132
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.129 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,495,467,176
Number of Sequences: 23463169
Number of extensions: 48446367
Number of successful extensions: 152989
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 152934
Number of HSP's gapped (non-prelim): 73
length of query: 99
length of database: 8,064,228,071
effective HSP length: 68
effective length of query: 31
effective length of database: 6,468,732,579
effective search space: 200530709949
effective search space used: 200530709949
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)