BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041025
         (99 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8LGU7|RNZN_ARATH Nuclear ribonuclease Z OS=Arabidopsis thaliana GN=NUZ PE=2 SV=3
          Length = 280

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 19/56 (33%)

Query: 24 RGMQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
          + MQ++G  +EGLSI                     P R+IS +FLF SH+HMDHI
Sbjct: 5  KAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHI 60


>sp|P60193|RNZN_WHEAT Nuclear ribonuclease Z (Fragment) OS=Triticum aestivum GN=ELAC
          PE=1 SV=1
          Length = 176

 Score = 39.3 bits (90), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 19/54 (35%)

Query: 26 MQVQGCKVEGLSIAS-------------------PSRSISLNFLFTSHAHMDHI 60
          ++++G  VEG+SI                     P R+++ +FLF SHAH+DHI
Sbjct: 7  LEIEGYPVEGISIGGHETCVIFPTLSLAFDIGRCPQRAVAQDFLFISHAHLDHI 60


>sp|Q8L633|RNZC_ARATH Ribonuclease Z, chloroplastic OS=Arabidopsis thaliana GN=CPZ PE=2
           SV=1
          Length = 354

 Score = 37.7 bits (86), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 19/76 (25%)

Query: 4   CSTAVELQNGHEAKEEEKSGRGMQVQGCKVEGLSIAS-------------------PSRS 44
            S A+E +  +       + +G++++   +EG+S+                     PSR+
Sbjct: 54  ISRAIEEEEEYRKARAAVNRKGVELESYAIEGISVGGHETCVIVPELKCVFDIGRCPSRA 113

Query: 45  ISLNFLFTSHAHMDHI 60
           I   FLF +HAH+DHI
Sbjct: 114 IQQKFLFITHAHLDHI 129


>sp|P11089|FLA1_BORBU Flagellar filament 41 kDa core protein OS=Borrelia burgdorferi
          (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680)
          GN=fla PE=1 SV=1
          Length = 336

 Score = 29.6 bits (65), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 6  TAVELQNGHEAKEEEKSGRGMQVQG---CKVEGLSIASPSRSISLNFLFTSHAHMDHIFT 62
          T  +L +G+          GM V G    ++ GLS AS + S ++NF+ T+  +++ +  
Sbjct: 26 TQEKLSSGYRINRASDDAAGMGVSGKINAQIRGLSQASRNTSKAINFIQTTEGNLNEVEK 85

Query: 63 LLV 65
          +LV
Sbjct: 86 VLV 88


>sp|A9IZW8|GLO2_BART1 Hydroxyacylglutathione hydrolase OS=Bartonella tribocorum (strain
          CIP 105476 / IBS 506) GN=gloB PE=3 SV=1
          Length = 253

 Score = 29.6 bits (65), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 19 EEKSGRGMQVQGCKVEGLSIASPSRSISLNFLFTSHAHMDHIFTLLVLHIWRYSKNKFQP 78
          +EKSG    +   + + +  A   R+ +L+ +F +H H DH+  L  L    Y+   F P
Sbjct: 19 DEKSGMTAAIDAPESKAIHNALKRRNWTLHTIFVTHHHHDHVEALAELK-QVYNAIVFGP 77

Query: 79 LKEKQK 84
            EK K
Sbjct: 78 AAEKNK 83


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.129    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,825,218
Number of Sequences: 539616
Number of extensions: 1169797
Number of successful extensions: 3705
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3699
Number of HSP's gapped (non-prelim): 11
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)