Query 041025
Match_columns 99
No_of_seqs 115 out of 1034
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 03:04:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041025.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041025hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1234 ElaC Metal-dependent h 98.7 1.9E-08 4.2E-13 79.1 4.6 44 40-83 47-90 (292)
2 PRK00055 ribonuclease Z; Revie 98.6 3.9E-08 8.5E-13 72.3 2.9 31 43-73 50-80 (270)
3 TIGR02649 true_RNase_BN ribonu 98.6 4.1E-08 8.8E-13 75.7 2.9 31 43-73 51-81 (303)
4 TIGR02651 RNase_Z ribonuclease 98.5 1E-07 2.2E-12 72.1 2.8 30 44-73 49-78 (299)
5 COG1237 Metal-dependent hydrol 98.4 1.9E-07 4.1E-12 74.6 3.1 31 40-70 52-82 (259)
6 PF00753 Lactamase_B: Metallo- 98.3 3.4E-07 7.4E-12 61.0 1.9 30 43-72 40-69 (194)
7 COG0595 mRNA degradation ribon 98.3 4E-07 8.6E-12 78.5 2.1 32 45-76 65-96 (555)
8 PF12706 Lactamase_B_2: Beta-l 98.3 3.2E-07 6.8E-12 63.9 1.2 39 46-84 29-69 (194)
9 TIGR02650 RNase_Z_T_toga ribon 98.2 5.1E-07 1.1E-11 72.2 2.0 29 42-70 36-64 (277)
10 PRK02113 putative hydrolase; P 98.2 1.2E-06 2.7E-11 65.1 2.7 25 44-68 64-88 (252)
11 smart00849 Lactamase_B Metallo 98.1 1.3E-06 2.7E-11 59.3 2.2 26 44-69 39-64 (183)
12 TIGR00649 MG423 conserved hypo 98.1 1.4E-06 3E-11 70.4 2.6 36 45-80 57-92 (422)
13 PRK02126 ribonuclease Z; Provi 98.1 2.3E-06 4.9E-11 68.7 3.4 28 43-70 44-71 (334)
14 PRK05184 pyrroloquinoline quin 98.1 2.1E-06 4.5E-11 67.5 2.6 23 44-66 78-100 (302)
15 PRK11244 phnP carbon-phosphoru 98.1 3.1E-06 6.7E-11 63.4 3.0 25 44-68 64-88 (250)
16 TIGR03307 PhnP phosphonate met 98.1 3.7E-06 8.1E-11 62.4 3.5 25 44-68 54-78 (238)
17 COG1235 PhnP Metal-dependent h 98.0 4.9E-06 1.1E-10 63.6 3.0 29 45-73 61-89 (269)
18 TIGR02108 PQQ_syn_pqqB coenzym 98.0 4.5E-06 9.8E-11 66.1 2.8 26 42-67 75-100 (302)
19 TIGR03675 arCOG00543 arCOG0054 97.9 4.2E-06 9E-11 72.6 2.3 25 45-69 227-251 (630)
20 COG1236 YSH1 Predicted exonucl 97.9 7.6E-06 1.7E-10 67.7 2.7 25 46-70 49-73 (427)
21 COG1782 Predicted metal-depend 97.9 6.9E-06 1.5E-10 71.9 2.0 27 46-72 234-260 (637)
22 COG0491 GloB Zn-dependent hydr 97.8 1E-05 2.2E-10 56.9 2.2 26 46-71 62-87 (252)
23 KOG1136 Predicted cleavage and 97.8 1.4E-05 2.9E-10 67.9 2.1 57 1-72 30-86 (501)
24 PRK10241 hydroxyacylglutathion 97.7 1.7E-05 3.8E-10 60.6 2.5 33 46-78 45-77 (251)
25 PRK00685 metal-dependent hydro 97.7 1.6E-05 3.4E-10 57.8 2.1 24 45-68 39-62 (228)
26 TIGR03413 GSH_gloB hydroxyacyl 97.7 1.9E-05 4.1E-10 60.2 2.1 25 46-70 43-67 (248)
27 PRK11921 metallo-beta-lactamas 97.7 2.4E-05 5.1E-10 63.1 2.1 33 45-77 68-100 (394)
28 PLN02469 hydroxyacylglutathion 97.6 2.8E-05 6E-10 60.2 2.1 31 46-76 46-76 (258)
29 PRK04286 hypothetical protein; 97.4 5.3E-05 1.1E-09 59.5 1.4 23 44-66 63-85 (298)
30 PRK05452 anaerobic nitric oxid 97.4 7.7E-05 1.7E-09 62.5 2.1 26 45-70 70-95 (479)
31 PLN02398 hydroxyacylglutathion 97.2 0.00021 4.7E-09 58.0 2.6 26 45-70 120-145 (329)
32 PLN02962 hydroxyacylglutathion 97.2 0.00018 4E-09 55.9 1.8 24 46-69 61-84 (251)
33 COG5212 PDE1 Low-affinity cAMP 97.2 9.4E-05 2E-09 61.2 -0.1 52 3-64 79-130 (356)
34 PRK11539 ComEC family competen 97.1 0.00027 5.9E-09 62.0 2.5 34 46-79 551-584 (755)
35 TIGR00361 ComEC_Rec2 DNA inter 97.1 0.00025 5.4E-09 61.1 2.3 34 46-79 490-523 (662)
36 COG2333 ComEC Predicted hydrol 97.0 0.0004 8.6E-09 55.9 2.1 30 45-74 89-118 (293)
37 PF02112 PDEase_II: cAMP phosp 96.9 0.00028 6.1E-09 57.7 0.8 19 46-64 79-97 (335)
38 PRK11709 putative L-ascorbate 96.7 0.00071 1.5E-08 55.2 1.3 18 44-61 107-124 (355)
39 KOG0813 Glyoxylase [General fu 96.6 0.0012 2.7E-08 52.9 2.1 27 43-69 48-74 (265)
40 PF13483 Lactamase_B_3: Beta-l 96.4 0.0017 3.7E-08 45.5 1.4 19 44-62 34-52 (163)
41 COG2220 Predicted Zn-dependent 95.5 0.0073 1.6E-07 45.5 1.6 21 44-64 50-70 (258)
42 KOG1137 mRNA cleavage and poly 94.8 0.0038 8.2E-08 55.4 -2.1 33 42-74 61-93 (668)
43 KOG2121 Predicted metal-depend 94.2 0.0074 1.6E-07 54.5 -1.6 30 45-74 500-529 (746)
44 COG2015 Alkyl sulfatase and re 92.3 0.061 1.3E-06 47.8 1.2 27 44-70 162-188 (655)
45 KOG1135 mRNA cleavage and poly 87.4 0.34 7.3E-06 44.2 1.8 33 45-77 50-83 (764)
46 COG0426 FpaA Uncharacterized f 86.3 0.53 1.2E-05 39.8 2.3 30 43-72 69-98 (388)
47 KOG1361 Predicted hydrolase in 80.2 0.78 1.7E-05 39.9 0.9 20 46-65 112-131 (481)
48 PF13691 Lactamase_B_4: tRNase 78.8 1.4 3E-05 28.4 1.6 22 41-62 41-63 (63)
49 COG2248 Predicted hydrolase (m 75.0 1.5 3.3E-05 36.2 1.2 17 46-62 65-81 (304)
50 KOG3798 Predicted Zn-dependent 53.5 7 0.00015 32.7 1.2 21 44-64 130-150 (343)
51 KOG0814 Glyoxylase [General fu 49.4 6.8 0.00015 31.3 0.5 21 46-66 57-77 (237)
52 PF06415 iPGM_N: BPG-independe 39.4 11 0.00024 29.7 0.2 20 54-73 42-61 (223)
53 PF13676 TIR_2: TIR domain; PD 32.5 22 0.00048 22.5 0.8 9 50-58 1-9 (102)
54 PF12065 DUF3545: Protein of u 30.1 18 0.0004 23.5 0.1 13 84-96 17-29 (59)
55 KOG4736 Uncharacterized conser 29.7 28 0.00062 28.9 1.2 21 43-63 122-142 (302)
56 cd07902 Adenylation_DNA_ligase 28.5 25 0.00053 26.3 0.6 23 76-98 187-210 (213)
57 cd07905 Adenylation_DNA_ligase 27.5 27 0.00058 25.6 0.6 23 76-98 168-191 (194)
No 1
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=98.69 E-value=1.9e-08 Score=79.06 Aligned_cols=44 Identities=27% Similarity=0.306 Sum_probs=36.7
Q ss_pred CCCCCCCcCEEEeeccCchhhccHHHHHHHhcCCCcCCCcchhH
Q 041025 40 SPSRSISLNFLFTSHAHMDHIFTLLVLHIWRYSKNKFQPLKEKQ 83 (99)
Q Consensus 40 cp~~~~~id~IfITH~H~DHigGLp~l~~~r~~~~~~~Pl~~~~ 83 (99)
....+.+|++|||||.|.|||.|||.++..++..++..|+..-+
T Consensus 47 ~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~iyg 90 (292)
T COG1234 47 AGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKIYG 90 (292)
T ss_pred hcCChhhccEEEeeccccchhcCcHHHHHHhhccCCCCceeEEC
Confidence 44455689999999999999999999999999988777665544
No 2
>PRK00055 ribonuclease Z; Reviewed
Probab=98.57 E-value=3.9e-08 Score=72.31 Aligned_cols=31 Identities=32% Similarity=0.400 Sum_probs=25.9
Q ss_pred CCCCcCEEEeeccCchhhccHHHHHHHhcCC
Q 041025 43 RSISLNFLFTSHAHMDHIFTLLVLHIWRYSK 73 (99)
Q Consensus 43 ~~~~id~IfITH~H~DHigGLp~l~~~r~~~ 73 (99)
+..+||+|||||.|.||++||+.++..+...
T Consensus 50 ~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~ 80 (270)
T PRK00055 50 KPRKIDKIFITHLHGDHIFGLPGLLSTRSLS 80 (270)
T ss_pred CHHHCCEEEEeCCCchhhCcHHHHHHHhhhc
Confidence 3457999999999999999999998766543
No 3
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=98.56 E-value=4.1e-08 Score=75.69 Aligned_cols=31 Identities=35% Similarity=0.376 Sum_probs=26.3
Q ss_pred CCCCcCEEEeeccCchhhccHHHHHHHhcCC
Q 041025 43 RSISLNFLFTSHAHMDHIFTLLVLHIWRYSK 73 (99)
Q Consensus 43 ~~~~id~IfITH~H~DHigGLp~l~~~r~~~ 73 (99)
++.+||+|||||.|.||++|||.++..+...
T Consensus 51 ~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~ 81 (303)
T TIGR02649 51 NPGKLDKIFISHLHGDHLFGLPGLLCSRSMS 81 (303)
T ss_pred CHHHCcEEEEeCCChhhcCCHHHHHHHHHhc
Confidence 3467999999999999999999998776543
No 4
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=98.46 E-value=1e-07 Score=72.14 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=25.5
Q ss_pred CCCcCEEEeeccCchhhccHHHHHHHhcCC
Q 041025 44 SISLNFLFTSHAHMDHIFTLLVLHIWRYSK 73 (99)
Q Consensus 44 ~~~id~IfITH~H~DHigGLp~l~~~r~~~ 73 (99)
..++|+|||||.|.||++||+.++..+...
T Consensus 49 ~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~ 78 (299)
T TIGR02651 49 PMKIDRIFITHLHGDHILGLPGLLSTMSFQ 78 (299)
T ss_pred HHHCcEEEEECCchhhhcChHHHHHhhccC
Confidence 346899999999999999999998765543
No 5
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=98.40 E-value=1.9e-07 Score=74.59 Aligned_cols=31 Identities=23% Similarity=0.095 Sum_probs=27.1
Q ss_pred CCCCCCCcCEEEeeccCchhhccHHHHHHHh
Q 041025 40 SPSRSISLNFLFTSHAHMDHIFTLLVLHIWR 70 (99)
Q Consensus 40 cp~~~~~id~IfITH~H~DHigGLp~l~~~r 70 (99)
.+..+.+||+|+|||.|+||++||++++...
T Consensus 52 lgvd~~did~vvlSHgH~DH~GGL~~~~~~~ 82 (259)
T COG1237 52 LGVDLRDIDAVVLSHGHYDHTGGLPYLLEEN 82 (259)
T ss_pred cCCCcccCcEEEEeCCCccccCchHhHHhcc
Confidence 5666779999999999999999999887754
No 6
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=98.29 E-value=3.4e-07 Score=60.95 Aligned_cols=30 Identities=27% Similarity=0.164 Sum_probs=25.1
Q ss_pred CCCCcCEEEeeccCchhhccHHHHHHHhcC
Q 041025 43 RSISLNFLFTSHAHMDHIFTLLVLHIWRYS 72 (99)
Q Consensus 43 ~~~~id~IfITH~H~DHigGLp~l~~~r~~ 72 (99)
...+|++||+||.|.||++|++.+......
T Consensus 40 ~~~~i~~vi~TH~H~DH~ggl~~~~~~~~~ 69 (194)
T PF00753_consen 40 SGEDIDAVILTHAHPDHIGGLPELLEAGPV 69 (194)
T ss_dssp TGGGEEEEEESSSSHHHHTTHHHHHHHTTE
T ss_pred cCCCeEEEEECcccccccccccccccccce
Confidence 345789999999999999999999876443
No 7
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=98.26 E-value=4e-07 Score=78.50 Aligned_cols=32 Identities=25% Similarity=0.201 Sum_probs=27.1
Q ss_pred CCcCEEEeeccCchhhccHHHHHHHhcCCCcC
Q 041025 45 ISLNFLFTSHAHMDHIFTLLVLHIWRYSKNKF 76 (99)
Q Consensus 45 ~~id~IfITH~H~DHigGLp~l~~~r~~~~~~ 76 (99)
.+|++|||||+|.||||++|+|+.......+|
T Consensus 65 ~kvkgI~lTHgHeDHIGaip~ll~~~~~~piy 96 (555)
T COG0595 65 DKVKGIFLTHGHEDHIGALPYLLKQVLFAPIY 96 (555)
T ss_pred ccceEEEecCCchhhccchHHHHhcCCcCcee
Confidence 48999999999999999999999876644443
No 8
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=98.26 E-value=3.2e-07 Score=63.94 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=29.2
Q ss_pred CcCEEEeeccCchhhccHHHHHHHhcCC--CcCCCcchhHH
Q 041025 46 SLNFLFTSHAHMDHIFTLLVLHIWRYSK--NKFQPLKEKQK 84 (99)
Q Consensus 46 ~id~IfITH~H~DHigGLp~l~~~r~~~--~~~~Pl~~~~~ 84 (99)
+||+|||||.|.||+.|++.+....... .++.|....+.
T Consensus 29 ~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~ 69 (194)
T PF12706_consen 29 DIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEF 69 (194)
T ss_dssp CEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHH
T ss_pred CCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHH
Confidence 6899999999999999999998766554 35555544443
No 9
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=98.23 E-value=5.1e-07 Score=72.25 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=24.7
Q ss_pred CCCCCcCEEEeeccCchhhccHHHHHHHh
Q 041025 42 SRSISLNFLFTSHAHMDHIFTLLVLHIWR 70 (99)
Q Consensus 42 ~~~~~id~IfITH~H~DHigGLp~l~~~r 70 (99)
.....++.|||||+|+||++||+.++..+
T Consensus 36 ~k~~~l~~vFlTH~H~DHi~gL~~~~~~~ 64 (277)
T TIGR02650 36 KKVAAFKVFFLHGGHDDHAAGLGGVNIIN 64 (277)
T ss_pred hhHhhcCEEEeecCchhhhcchHHHHhhh
Confidence 44557899999999999999998887744
No 10
>PRK02113 putative hydrolase; Provisional
Probab=98.16 E-value=1.2e-06 Score=65.13 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.2
Q ss_pred CCCcCEEEeeccCchhhccHHHHHH
Q 041025 44 SISLNFLFTSHAHMDHIFTLLVLHI 68 (99)
Q Consensus 44 ~~~id~IfITH~H~DHigGLp~l~~ 68 (99)
..++|+|||||.|.||++||+.+..
T Consensus 64 ~~~id~I~lTH~H~DH~~gl~~l~~ 88 (252)
T PRK02113 64 FGKIDAVLITHEHYDHVGGLDDLRP 88 (252)
T ss_pred ccccCEEEECCCChhhhCCHHHHHH
Confidence 4579999999999999999998854
No 11
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=98.14 E-value=1.3e-06 Score=59.28 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=23.1
Q ss_pred CCCcCEEEeeccCchhhccHHHHHHH
Q 041025 44 SISLNFLFTSHAHMDHIFTLLVLHIW 69 (99)
Q Consensus 44 ~~~id~IfITH~H~DHigGLp~l~~~ 69 (99)
..+|++|||||.|.||++|++.+...
T Consensus 39 ~~~i~~i~iTH~H~DH~~g~~~~~~~ 64 (183)
T smart00849 39 PKDIDAIILTHGHPDHIGGLPELLEA 64 (183)
T ss_pred chhhcEEEecccCcchhccHHHHHhC
Confidence 34789999999999999999988776
No 12
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=98.13 E-value=1.4e-06 Score=70.42 Aligned_cols=36 Identities=19% Similarity=0.086 Sum_probs=27.5
Q ss_pred CCcCEEEeeccCchhhccHHHHHHHhcCCCcCCCcc
Q 041025 45 ISLNFLFTSHAHMDHIFTLLVLHIWRYSKNKFQPLK 80 (99)
Q Consensus 45 ~~id~IfITH~H~DHigGLp~l~~~r~~~~~~~Pl~ 80 (99)
.++++|||||+|.||++|+|.++.......+|.|-.
T Consensus 57 ~~i~~I~iTH~H~DHiggl~~l~~~~~~~~Vy~~~~ 92 (422)
T TIGR00649 57 DKVKGIFITHGHEDHIGAVPYLFHTVGFPPIYGTPL 92 (422)
T ss_pred ccCCEEEECCCChHHhCcHHHHHHhCCCCeEEeCHH
Confidence 478999999999999999999986543233454433
No 13
>PRK02126 ribonuclease Z; Provisional
Probab=98.11 E-value=2.3e-06 Score=68.75 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=24.6
Q ss_pred CCCCcCEEEeeccCchhhccHHHHHHHh
Q 041025 43 RSISLNFLFTSHAHMDHIFTLLVLHIWR 70 (99)
Q Consensus 43 ~~~~id~IfITH~H~DHigGLp~l~~~r 70 (99)
...+|++|||||.|+||++|++.|+...
T Consensus 44 ~~~~i~~I~iTH~H~DHi~Gl~~l~~~~ 71 (334)
T PRK02126 44 ELLRISHIFVSHTHMDHFIGFDRLLRHC 71 (334)
T ss_pred CCCccCEEEEcCCChhHhCcHHHHHHHh
Confidence 3457899999999999999999998765
No 14
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=98.08 E-value=2.1e-06 Score=67.45 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=21.1
Q ss_pred CCCcCEEEeeccCchhhccHHHH
Q 041025 44 SISLNFLFTSHAHMDHIFTLLVL 66 (99)
Q Consensus 44 ~~~id~IfITH~H~DHigGLp~l 66 (99)
..+||+|||||.|.|||.||+.+
T Consensus 78 ~~~ldav~lTH~H~DHi~Gl~~l 100 (302)
T PRK05184 78 DTPIAAVVLTDGQIDHTTGLLTL 100 (302)
T ss_pred cccccEEEEeCCchhhhhChHhh
Confidence 34799999999999999999988
No 15
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=98.06 E-value=3.1e-06 Score=63.40 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=21.7
Q ss_pred CCCcCEEEeeccCchhhccHHHHHH
Q 041025 44 SISLNFLFTSHAHMDHIFTLLVLHI 68 (99)
Q Consensus 44 ~~~id~IfITH~H~DHigGLp~l~~ 68 (99)
..+||+|||||.|.||++||+.+..
T Consensus 64 ~~~i~~i~iTH~H~DHi~gl~~l~~ 88 (250)
T PRK11244 64 PGSLQQILLTHYHMDHVQGLFPLRW 88 (250)
T ss_pred cccCCEEEEccCchhhhccHHHHHh
Confidence 3579999999999999999987743
No 16
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=98.06 E-value=3.7e-06 Score=62.39 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=21.5
Q ss_pred CCCcCEEEeeccCchhhccHHHHHH
Q 041025 44 SISLNFLFTSHAHMDHIFTLLVLHI 68 (99)
Q Consensus 44 ~~~id~IfITH~H~DHigGLp~l~~ 68 (99)
..+||+|||||.|.||++||+.+..
T Consensus 54 ~~~id~i~iTH~H~DHi~gl~~l~~ 78 (238)
T TIGR03307 54 PGSLQAILLTHYHMDHVQGLFPLRW 78 (238)
T ss_pred ccCCCEEEEecCchhhhcchHHHHH
Confidence 3479999999999999999977643
No 17
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=97.99 E-value=4.9e-06 Score=63.65 Aligned_cols=29 Identities=28% Similarity=0.214 Sum_probs=24.4
Q ss_pred CCcCEEEeeccCchhhccHHHHHHHhcCC
Q 041025 45 ISLNFLFTSHAHMDHIFTLLVLHIWRYSK 73 (99)
Q Consensus 45 ~~id~IfITH~H~DHigGLp~l~~~r~~~ 73 (99)
..+|+||+||.|.|||.|++.+.......
T Consensus 61 ~~idai~~TH~H~DHi~Gl~~l~~~~~~~ 89 (269)
T COG1235 61 SDLDAILLTHEHSDHIQGLDDLRRAYTLP 89 (269)
T ss_pred cccCeEEEecccHHhhcChHHHHHHhcCC
Confidence 37999999999999999999997644443
No 18
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=97.98 E-value=4.5e-06 Score=66.11 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=23.0
Q ss_pred CCCCCcCEEEeeccCchhhccHHHHH
Q 041025 42 SRSISLNFLFTSHAHMDHIFTLLVLH 67 (99)
Q Consensus 42 ~~~~~id~IfITH~H~DHigGLp~l~ 67 (99)
.....||+|||||.|.||+.||+.+.
T Consensus 75 l~~~~IdaI~lTH~H~DHi~GL~~L~ 100 (302)
T TIGR02108 75 LRHTPIAGVVLTDGEIDHTTGLLTLR 100 (302)
T ss_pred CCcccCCEEEEeCCCcchhhCHHHHc
Confidence 44668999999999999999999884
No 19
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=97.95 E-value=4.2e-06 Score=72.62 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.6
Q ss_pred CCcCEEEeeccCchhhccHHHHHHH
Q 041025 45 ISLNFLFTSHAHMDHIFTLLVLHIW 69 (99)
Q Consensus 45 ~~id~IfITH~H~DHigGLp~l~~~ 69 (99)
.+||+|||||+|+||+|+||+++..
T Consensus 227 ~~IDaVlITHaH~DHiG~LP~L~k~ 251 (630)
T TIGR03675 227 DELDAVVITHAHLDHSGLVPLLFKY 251 (630)
T ss_pred HHCcEEEECCCCHHHHhhHHHHHHh
Confidence 4689999999999999999998754
No 20
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=7.6e-06 Score=67.66 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.9
Q ss_pred CcCEEEeeccCchhhccHHHHHHHh
Q 041025 46 SLNFLFTSHAHMDHIFTLLVLHIWR 70 (99)
Q Consensus 46 ~id~IfITH~H~DHigGLp~l~~~r 70 (99)
.+|++||||+|+||+|+||++....
T Consensus 49 ~vDavllTHaHlDH~g~lp~l~~~~ 73 (427)
T COG1236 49 KVDAVLLTHAHLDHIGALPYLVRNG 73 (427)
T ss_pred CcCEEEeccCchhhhcccHHHHHhc
Confidence 5899999999999999999998754
No 21
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=97.85 E-value=6.9e-06 Score=71.88 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=23.4
Q ss_pred CcCEEEeeccCchhhccHHHHHHHhcC
Q 041025 46 SLNFLFTSHAHMDHIFTLLVLHIWRYS 72 (99)
Q Consensus 46 ~id~IfITH~H~DHigGLp~l~~~r~~ 72 (99)
.+|+|+|||+|+||+|-||+|+..-..
T Consensus 234 ~lDAViiTHAHLDH~G~lP~LfkYgy~ 260 (637)
T COG1782 234 ELDAVIITHAHLDHCGFLPLLFKYGYD 260 (637)
T ss_pred ccceEEEeecccccccchhhhhhcCCC
Confidence 589999999999999999999865433
No 22
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=97.83 E-value=1e-05 Score=56.88 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=22.7
Q ss_pred CcCEEEeeccCchhhccHHHHHHHhc
Q 041025 46 SLNFLFTSHAHMDHIFTLLVLHIWRY 71 (99)
Q Consensus 46 ~id~IfITH~H~DHigGLp~l~~~r~ 71 (99)
+|++|++||.|.||++|+..+.....
T Consensus 62 ~i~~vilTH~H~DH~gg~~~~~~~~~ 87 (252)
T COG0491 62 DVDAILLTHGHFDHIGGAAVLKEAFG 87 (252)
T ss_pred ChheeeecCCchhhhccHHHHHhhcC
Confidence 68999999999999999998865443
No 23
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=97.75 E-value=1.4e-05 Score=67.92 Aligned_cols=57 Identities=18% Similarity=0.248 Sum_probs=37.9
Q ss_pred CCcccchhhccccchhhhhhhcccceeeecceeeeeeccCCCCCCCcCEEEeeccCchhhccHHHHHHHhcC
Q 041025 1 MIDCSTAVELQNGHEAKEEEKSGRGMQVQGCKVEGLSIASPSRSISLNFLFTSHAHMDHIFTLLVLHIWRYS 72 (99)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~glSigcp~~~~~id~IfITH~H~DHigGLp~l~~~r~~ 72 (99)
|+|||--|-..+. ++-+. |++ +|-+.+. -.-||.|.|||.|+||+|.||++-...+.
T Consensus 30 M~DCGMHMG~nD~--rRfPd-----FSy-------I~~~g~~-~~~idCvIIsHFHlDHcGaLPyfsEv~GY 86 (501)
T KOG1136|consen 30 MFDCGMHMGFNDD--RRFPD-----FSY-------ISKSGRF-TDAIDCVIISHFHLDHCGALPYFSEVVGY 86 (501)
T ss_pred EEecccccccCcc--ccCCC-----cee-------ecCCCCc-ccceeEEEEeeecccccccccchHhhhCC
Confidence 7899998888776 33222 222 1111111 12589999999999999999999765544
No 24
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=97.75 E-value=1.7e-05 Score=60.57 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=26.1
Q ss_pred CcCEEEeeccCchhhccHHHHHHHhcCCCcCCC
Q 041025 46 SLNFLFTSHAHMDHIFTLLVLHIWRYSKNKFQP 78 (99)
Q Consensus 46 ~id~IfITH~H~DHigGLp~l~~~r~~~~~~~P 78 (99)
.+++|++||.|.||++|+..+........++.|
T Consensus 45 ~l~~IllTH~H~DHigG~~~l~~~~~~~~V~~~ 77 (251)
T PRK10241 45 QPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGP 77 (251)
T ss_pred ccCEEEeCCCCchhhccHHHHHHHCCCCEEEec
Confidence 468999999999999999999876544444544
No 25
>PRK00685 metal-dependent hydrolase; Provisional
Probab=97.75 E-value=1.6e-05 Score=57.83 Aligned_cols=24 Identities=17% Similarity=0.461 Sum_probs=20.9
Q ss_pred CCcCEEEeeccCchhhccHHHHHH
Q 041025 45 ISLNFLFTSHAHMDHIFTLLVLHI 68 (99)
Q Consensus 45 ~~id~IfITH~H~DHigGLp~l~~ 68 (99)
.++|+|||||.|.||++++..++.
T Consensus 39 ~~id~vliTH~H~DH~~~~~~~~~ 62 (228)
T PRK00685 39 VKVDYILLTHGHGDHLGDTVEIAK 62 (228)
T ss_pred CcccEEEeCCCCccccccHHHHHH
Confidence 379999999999999999887653
No 26
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=97.71 E-value=1.9e-05 Score=60.15 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=22.1
Q ss_pred CcCEEEeeccCchhhccHHHHHHHh
Q 041025 46 SLNFLFTSHAHMDHIFTLLVLHIWR 70 (99)
Q Consensus 46 ~id~IfITH~H~DHigGLp~l~~~r 70 (99)
++++||+||.|.||++|++.+....
T Consensus 43 ~l~~Il~TH~H~DHigG~~~l~~~~ 67 (248)
T TIGR03413 43 TLTAILLTHHHHDHVGGVAELLEAF 67 (248)
T ss_pred eeeEEEeCCCCccccCCHHHHHHHC
Confidence 4699999999999999999987654
No 27
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=97.66 E-value=2.4e-05 Score=63.08 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=26.1
Q ss_pred CCcCEEEeeccCchhhccHHHHHHHhcCCCcCC
Q 041025 45 ISLNFLFTSHAHMDHIFTLLVLHIWRYSKNKFQ 77 (99)
Q Consensus 45 ~~id~IfITH~H~DHigGLp~l~~~r~~~~~~~ 77 (99)
.+||+|++||.|.||++|++.++.......++.
T Consensus 68 ~~Id~IilTH~H~DHiggl~~l~~~~p~a~V~~ 100 (394)
T PRK11921 68 DKIDYIVANHGEIDHSGALPELMKEIPDTPIYC 100 (394)
T ss_pred ccCCEEEeCCCCCchhhHHHHHHHHCCCCEEEE
Confidence 479999999999999999999886544443443
No 28
>PLN02469 hydroxyacylglutathione hydrolase
Probab=97.63 E-value=2.8e-05 Score=60.23 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=24.8
Q ss_pred CcCEEEeeccCchhhccHHHHHHHhcCCCcC
Q 041025 46 SLNFLFTSHAHMDHIFTLLVLHIWRYSKNKF 76 (99)
Q Consensus 46 ~id~IfITH~H~DHigGLp~l~~~r~~~~~~ 76 (99)
.|++|++||.|.||++|+..|........++
T Consensus 46 ~l~~Il~TH~H~DH~gG~~~l~~~~~~~~V~ 76 (258)
T PLN02469 46 KIKLVLTTHHHWDHAGGNEKIKKLVPGIKVY 76 (258)
T ss_pred cccEEEecCCCCccccCHHHHHHHCCCCEEE
Confidence 6899999999999999999987754333333
No 29
>PRK04286 hypothetical protein; Provisional
Probab=97.45 E-value=5.3e-05 Score=59.46 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=19.7
Q ss_pred CCCcCEEEeeccCchhhccHHHH
Q 041025 44 SISLNFLFTSHAHMDHIFTLLVL 66 (99)
Q Consensus 44 ~~~id~IfITH~H~DHigGLp~l 66 (99)
..+||+|||||.|.|||.|+..+
T Consensus 63 ~~~id~IliTH~H~DHi~g~~~~ 85 (298)
T PRK04286 63 AKKADVITISHYHYDHHTPFYED 85 (298)
T ss_pred cccCCEEEecCCccccCCCcccc
Confidence 44799999999999999887654
No 30
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=97.41 E-value=7.7e-05 Score=62.47 Aligned_cols=26 Identities=23% Similarity=0.292 Sum_probs=23.3
Q ss_pred CCcCEEEeeccCchhhccHHHHHHHh
Q 041025 45 ISLNFLFTSHAHMDHIFTLLVLHIWR 70 (99)
Q Consensus 45 ~~id~IfITH~H~DHigGLp~l~~~r 70 (99)
.+|++|++||.|.||++|++.++...
T Consensus 70 ~~Id~IilTH~H~DH~Ggl~~Ll~~~ 95 (479)
T PRK05452 70 ADIDYIVINHAEEDHAGALTELMAQI 95 (479)
T ss_pred hhCCEEEeCCCCcchhchHHHHHHHC
Confidence 47999999999999999999998653
No 31
>PLN02398 hydroxyacylglutathione hydrolase
Probab=97.22 E-value=0.00021 Score=57.99 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.0
Q ss_pred CCcCEEEeeccCchhhccHHHHHHHh
Q 041025 45 ISLNFLFTSHAHMDHIFTLLVLHIWR 70 (99)
Q Consensus 45 ~~id~IfITH~H~DHigGLp~l~~~r 70 (99)
.+|++|++||.|.||++|+..|....
T Consensus 120 ~~L~~ILlTH~H~DH~GG~~~L~~~~ 145 (329)
T PLN02398 120 RNLTYILNTHHHYDHTGGNLELKARY 145 (329)
T ss_pred CCceEEEECCCCchhhCCHHHHHHhc
Confidence 47899999999999999999987653
No 32
>PLN02962 hydroxyacylglutathione hydrolase
Probab=97.18 E-value=0.00018 Score=55.87 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.7
Q ss_pred CcCEEEeeccCchhhccHHHHHHH
Q 041025 46 SLNFLFTSHAHMDHIFTLLVLHIW 69 (99)
Q Consensus 46 ~id~IfITH~H~DHigGLp~l~~~ 69 (99)
.|.+|++||.|.||++|++.+...
T Consensus 61 ~i~~Il~TH~H~DHigg~~~l~~~ 84 (251)
T PLN02962 61 KLIYAMNTHVHADHVTGTGLLKTK 84 (251)
T ss_pred eeEEEEcCCCCchhHHHHHHHHHH
Confidence 678999999999999999998764
No 33
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=97.16 E-value=9.4e-05 Score=61.22 Aligned_cols=52 Identities=33% Similarity=0.410 Sum_probs=38.5
Q ss_pred cccchhhccccchhhhhhhcccceeeecceeeeeeccCCCCCCCcCEEEeeccCchhhccHH
Q 041025 3 DCSTAVELQNGHEAKEEEKSGRGMQVQGCKVEGLSIASPSRSISLNFLFTSHAHMDHIFTLL 64 (99)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~glSigcp~~~~~id~IfITH~H~DHigGLp 64 (99)
+-+...+++.+|.++-+..+..-.--+||-+.. .|..-||||+|+|||.|+-
T Consensus 79 ~~g~s~~l~~~~~~~~e~~~~A~~~~~~y~~~Q----------~I~~y~ITH~HLDHIsGlV 130 (356)
T COG5212 79 LPGISRALEKGHFAAIEDAMAAPLTRQGYIFRQ----------SINSYFITHAHLDHISGLV 130 (356)
T ss_pred ccchHHHHHhhhhhhhhhhhhcchhhhhhhhhh----------hhhheEeccccccchhcee
Confidence 445566777777777666666666666666554 6899999999999999973
No 34
>PRK11539 ComEC family competence protein; Provisional
Probab=97.13 E-value=0.00027 Score=61.96 Aligned_cols=34 Identities=26% Similarity=0.109 Sum_probs=28.2
Q ss_pred CcCEEEeeccCchhhccHHHHHHHhcCCCcCCCc
Q 041025 46 SLNFLFTSHAHMDHIFTLLVLHIWRYSKNKFQPL 79 (99)
Q Consensus 46 ~id~IfITH~H~DHigGLp~l~~~r~~~~~~~Pl 79 (99)
++|+|+|||.|.||++|++.++........+.|.
T Consensus 551 ~lD~lilSH~d~DH~GGl~~Ll~~~~~~~i~~~~ 584 (755)
T PRK11539 551 TPEGIILSHEHLDHRGGLASLLHAWPMAWIRSPL 584 (755)
T ss_pred CcCEEEeCCCCcccCCCHHHHHHhCCcceeeccC
Confidence 5899999999999999999998876555555554
No 35
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=97.13 E-value=0.00025 Score=61.13 Aligned_cols=34 Identities=29% Similarity=0.232 Sum_probs=27.5
Q ss_pred CcCEEEeeccCchhhccHHHHHHHhcCCCcCCCc
Q 041025 46 SLNFLFTSHAHMDHIFTLLVLHIWRYSKNKFQPL 79 (99)
Q Consensus 46 ~id~IfITH~H~DHigGLp~l~~~r~~~~~~~Pl 79 (99)
+||+|+|||.|.||++|++.++....-.+.+.|-
T Consensus 490 ~ID~lilTH~d~DHiGGl~~ll~~~~v~~i~~~~ 523 (662)
T TIGR00361 490 KLEALILSHADQDHIGGAEIILKHHPVKRLVIPK 523 (662)
T ss_pred CcCEEEECCCchhhhCcHHHHHHhCCccEEEecc
Confidence 3899999999999999999998775555555443
No 36
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=97.00 E-value=0.0004 Score=55.88 Aligned_cols=30 Identities=23% Similarity=0.092 Sum_probs=25.3
Q ss_pred CCcCEEEeeccCchhhccHHHHHHHhcCCC
Q 041025 45 ISLNFLFTSHAHMDHIFTLLVLHIWRYSKN 74 (99)
Q Consensus 45 ~~id~IfITH~H~DHigGLp~l~~~r~~~~ 74 (99)
.+||.+++||.|.||+||++.++....-.+
T Consensus 89 ~~iD~lIlTH~d~DHiGg~~~vl~~~~v~~ 118 (293)
T COG2333 89 RKLDQLILTHPDADHIGGLDEVLKTIKVPE 118 (293)
T ss_pred ccccEEEeccCCccccCCHHHHHhhCCCCc
Confidence 369999999999999999999998544433
No 37
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=96.94 E-value=0.00028 Score=57.71 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=17.7
Q ss_pred CcCEEEeeccCchhhccHH
Q 041025 46 SLNFLFTSHAHMDHIFTLL 64 (99)
Q Consensus 46 ~id~IfITH~H~DHigGLp 64 (99)
.|...||||+|+|||.||-
T Consensus 79 ~I~~ylItH~HLDHi~gLv 97 (335)
T PF02112_consen 79 HIKGYLITHPHLDHIAGLV 97 (335)
T ss_pred hhheEEecCCchhhHHHHH
Confidence 7899999999999999984
No 38
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=96.69 E-value=0.00071 Score=55.22 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=15.9
Q ss_pred CCCcCEEEeeccCchhhc
Q 041025 44 SISLNFLFTSHAHMDHIF 61 (99)
Q Consensus 44 ~~~id~IfITH~H~DHig 61 (99)
...||+|||||.|.||+.
T Consensus 107 i~~IDaVLiTH~H~DHlD 124 (355)
T PRK11709 107 IREIDAVLATHDHSDHID 124 (355)
T ss_pred CCCCCEEEECCCcccccC
Confidence 457999999999999983
No 39
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=96.59 E-value=0.0012 Score=52.92 Aligned_cols=27 Identities=22% Similarity=0.142 Sum_probs=24.0
Q ss_pred CCCCcCEEEeeccCchhhccHHHHHHH
Q 041025 43 RSISLNFLFTSHAHMDHIFTLLVLHIW 69 (99)
Q Consensus 43 ~~~~id~IfITH~H~DHigGLp~l~~~ 69 (99)
...++.+||.||-|+||+||+..+...
T Consensus 48 ~~~~l~~Il~THhH~DHsGGn~~i~~~ 74 (265)
T KOG0813|consen 48 ENRRLTAILTTHHHYDHSGGNEDIKRE 74 (265)
T ss_pred ccCceeEEEeccccccccCcHHHHHhh
Confidence 345889999999999999999999776
No 40
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=96.36 E-value=0.0017 Score=45.52 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=14.7
Q ss_pred CCCcCEEEeeccCchhhcc
Q 041025 44 SISLNFLFTSHAHMDHIFT 62 (99)
Q Consensus 44 ~~~id~IfITH~H~DHigG 62 (99)
..++|+|||||.|.||+.-
T Consensus 34 ~~~~D~IlisH~H~DH~~~ 52 (163)
T PF13483_consen 34 PPKADAILISHSHPDHFDP 52 (163)
T ss_dssp S-B-SEEEESSSSTTT-CC
T ss_pred cCCCCEEEECCCccccCCh
Confidence 5689999999999999876
No 41
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=95.47 E-value=0.0073 Score=45.54 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=17.4
Q ss_pred CCCcCEEEeeccCchhhccHH
Q 041025 44 SISLNFLFTSHAHMDHIFTLL 64 (99)
Q Consensus 44 ~~~id~IfITH~H~DHigGLp 64 (99)
...+|+|+|||.|.||+..--
T Consensus 50 ~~~~D~ilitH~H~DHl~~~~ 70 (258)
T COG2220 50 LPPIDYILITHDHYDHLDDET 70 (258)
T ss_pred cCCCCEEEEeCCCccccCHHH
Confidence 446999999999999997543
No 42
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=94.75 E-value=0.0038 Score=55.44 Aligned_cols=33 Identities=18% Similarity=0.125 Sum_probs=27.3
Q ss_pred CCCCCcCEEEeeccCchhhccHHHHHHHhcCCC
Q 041025 42 SRSISLNFLFTSHAHMDHIFTLLVLHIWRYSKN 74 (99)
Q Consensus 42 ~~~~~id~IfITH~H~DHigGLp~l~~~r~~~~ 74 (99)
.+...||.++|||.|+||++.||+++..-...+
T Consensus 61 vd~s~id~llIthFhldh~aslp~~~qkTsf~g 93 (668)
T KOG1137|consen 61 VDLSAIDPLLITHFHLDHAASLPFTLQKTSFIG 93 (668)
T ss_pred cccccccHHHHhhhhhhhcccccceeeeccccc
Confidence 445689999999999999999999986655544
No 43
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=94.16 E-value=0.0074 Score=54.45 Aligned_cols=30 Identities=30% Similarity=0.319 Sum_probs=25.5
Q ss_pred CCcCEEEeeccCchhhccHHHHHHHhcCCC
Q 041025 45 ISLNFLFTSHAHMDHIFTLLVLHIWRYSKN 74 (99)
Q Consensus 45 ~~id~IfITH~H~DHigGLp~l~~~r~~~~ 74 (99)
.++.+|||||.|.||..||+.++..+....
T Consensus 500 r~LraI~ISHlHADHh~Gl~~vL~~r~k~~ 529 (746)
T KOG2121|consen 500 RKLRAIFISHLHADHHLGLISVLQARTKLL 529 (746)
T ss_pred HhHHHHHHHhhcccccccHHHHHHHHHHhc
Confidence 367899999999999999999998765543
No 44
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.31 E-value=0.061 Score=47.76 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=23.0
Q ss_pred CCCcCEEEeeccCchhhccHHHHHHHh
Q 041025 44 SISLNFLFTSHAHMDHIFTLLVLHIWR 70 (99)
Q Consensus 44 ~~~id~IfITH~H~DHigGLp~l~~~r 70 (99)
...|.+|+-||+|.||.||.-+++...
T Consensus 162 ~rPV~aVIYtHsH~DHfGGVkGiv~ea 188 (655)
T COG2015 162 QRPVVAVIYTHSHSDHFGGVKGIVSEA 188 (655)
T ss_pred CCCeEEEEeecccccccCCeeeccCHH
Confidence 346899999999999999999997543
No 45
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=87.37 E-value=0.34 Score=44.16 Aligned_cols=33 Identities=12% Similarity=0.012 Sum_probs=27.5
Q ss_pred CCcCEEEeeccCchhhccHHHHHHHhcCC-CcCC
Q 041025 45 ISLNFLFTSHAHMDHIFTLLVLHIWRYSK-NKFQ 77 (99)
Q Consensus 45 ~~id~IfITH~H~DHigGLp~l~~~r~~~-~~~~ 77 (99)
..||+|+|||.-.=|+|||||.+...+.. .+|.
T Consensus 50 ~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYA 83 (764)
T KOG1135|consen 50 PTIDAILLSHPDILHLGALPYAVGKLGLNAPVYA 83 (764)
T ss_pred ccccEEEecCCChHHhccchhhHhhCCccceEEE
Confidence 37999999999999999999998776665 4444
No 46
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=86.31 E-value=0.53 Score=39.79 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=25.3
Q ss_pred CCCCcCEEEeeccCchhhccHHHHHHHhcC
Q 041025 43 RSISLNFLFTSHAHMDHIFTLLVLHIWRYS 72 (99)
Q Consensus 43 ~~~~id~IfITH~H~DHigGLp~l~~~r~~ 72 (99)
.+.+||+|+++|.--||+|+|+.++.....
T Consensus 69 d~k~iDYIi~~H~ePDhsg~l~~ll~~~p~ 98 (388)
T COG0426 69 DPKEIDYIIVNHTEPDHSGSLPELLELAPN 98 (388)
T ss_pred ChhcCeEEEECCCCcchhhhHHHHHHhCCC
Confidence 355699999999999999999999865543
No 47
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=80.24 E-value=0.78 Score=39.90 Aligned_cols=20 Identities=35% Similarity=0.411 Sum_probs=17.1
Q ss_pred CcCEEEeeccCchhhccHHH
Q 041025 46 SLNFLFTSHAHMDHIFTLLV 65 (99)
Q Consensus 46 ~id~IfITH~H~DHigGLp~ 65 (99)
...+-|+||.|.||..||..
T Consensus 112 ~~s~yFLsHFHSDHy~GL~~ 131 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYIGLTK 131 (481)
T ss_pred ccceeeeecccccccccccc
Confidence 45788999999999999853
No 48
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=78.84 E-value=1.4 Score=28.42 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=19.1
Q ss_pred CCCCCCcCEEEeeccC-chhhcc
Q 041025 41 PSRSISLNFLFTSHAH-MDHIFT 62 (99)
Q Consensus 41 p~~~~~id~IfITH~H-~DHigG 62 (99)
..+..+++.||||+.. .|++||
T Consensus 41 ~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 41 KIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CCCccccceEEECCCCcccccCC
Confidence 3556789999999999 999987
No 49
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=75.03 E-value=1.5 Score=36.23 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=15.1
Q ss_pred CcCEEEeeccCchhhcc
Q 041025 46 SLNFLFTSHAHMDHIFT 62 (99)
Q Consensus 46 ~id~IfITH~H~DHigG 62 (99)
+.|.|.|||.|+||.--
T Consensus 65 ~a~VitISHYHYDHhtP 81 (304)
T COG2248 65 KADVITISHYHYDHHTP 81 (304)
T ss_pred hCCEEEEeeeccccCCc
Confidence 77999999999999754
No 50
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=53.52 E-value=7 Score=32.70 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=17.4
Q ss_pred CCCcCEEEeeccCchhhccHH
Q 041025 44 SISLNFLFTSHAHMDHIFTLL 64 (99)
Q Consensus 44 ~~~id~IfITH~H~DHigGLp 64 (99)
..++|.+++||.|+||.-.-.
T Consensus 130 ~p~~d~~~vsh~h~dhld~~~ 150 (343)
T KOG3798|consen 130 LPDLDFAVVSHDHYDHLDADA 150 (343)
T ss_pred CCCCceeccccccccccchHH
Confidence 558999999999999976443
No 51
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=49.36 E-value=6.8 Score=31.27 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=16.9
Q ss_pred CcCEEEeeccCchhhccHHHH
Q 041025 46 SLNFLFTSHAHMDHIFTLLVL 66 (99)
Q Consensus 46 ~id~IfITH~H~DHigGLp~l 66 (99)
++-+.+=||.|.|||-|.-.|
T Consensus 57 ~LiYa~NTH~HADHiTGtg~L 77 (237)
T KOG0814|consen 57 DLIYALNTHVHADHITGTGLL 77 (237)
T ss_pred eeeeeecceeecccccccchH
Confidence 456778899999999987555
No 52
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=39.38 E-value=11 Score=29.67 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=14.8
Q ss_pred ccCchhhccHHHHHHHhcCC
Q 041025 54 HAHMDHIFTLLVLHIWRYSK 73 (99)
Q Consensus 54 H~H~DHigGLp~l~~~r~~~ 73 (99)
|+|.||+.+|-.++......
T Consensus 42 HSh~~Hl~al~~~a~~~gv~ 61 (223)
T PF06415_consen 42 HSHIDHLFALIKLAKKQGVK 61 (223)
T ss_dssp S--HHHHHHHHHHHHHTT-S
T ss_pred cccHHHHHHHHHHHHHcCCC
Confidence 99999999999998876643
No 53
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=32.50 E-value=22 Score=22.53 Aligned_cols=9 Identities=33% Similarity=0.438 Sum_probs=8.4
Q ss_pred EEeeccCch
Q 041025 50 LFTSHAHMD 58 (99)
Q Consensus 50 IfITH~H~D 58 (99)
|||||++-|
T Consensus 1 VFIS~~~~D 9 (102)
T PF13676_consen 1 VFISYSSED 9 (102)
T ss_dssp EEEEEEGGG
T ss_pred eEEEecCCc
Confidence 799999998
No 54
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=30.15 E-value=18 Score=23.46 Aligned_cols=13 Identities=46% Similarity=1.025 Sum_probs=9.7
Q ss_pred HhhcCccccccee
Q 041025 84 KENQKPQKRKWLK 96 (99)
Q Consensus 84 ~e~~~~~~~~~~~ 96 (99)
...+||.||||-.
T Consensus 17 ~sr~k~~KRKWRE 29 (59)
T PF12065_consen 17 RSRSKPKKRKWRE 29 (59)
T ss_pred cccCCccchhHHH
Confidence 4457899999953
No 55
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.71 E-value=28 Score=28.93 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=18.9
Q ss_pred CCCCcCEEEeeccCchhhccH
Q 041025 43 RSISLNFLFTSHAHMDHIFTL 63 (99)
Q Consensus 43 ~~~~id~IfITH~H~DHigGL 63 (99)
....|+.+++||.|-+|++++
T Consensus 122 t~d~i~~vv~t~~~~~hlgn~ 142 (302)
T KOG4736|consen 122 TLDQIDSVVITHKSPGHLGNN 142 (302)
T ss_pred ChhhcceeEEeccCccccccc
Confidence 355899999999999999998
No 56
>cd07902 Adenylation_DNA_ligase_III Adenylation domain of DNA Ligase III. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three-step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. There are three classes of ATP-dependent DNA ligases in eukaryotic cells (I, III and IV). DNA ligase III is not found in lower eukaryotes and is present both in the nucleus and mitochondria. It has several isoforms; two splice forms, III-alpha and III-beta, differ in their carboxy-terminal sequences. DNA ligase III-beta is believed to play a role in homologous recombination during meiotic prophase. DNA ligase III-alpha interacts with X-ray Cross Complementing factor 1 (XRCC1) and functions in single nuc
Probab=28.45 E-value=25 Score=26.29 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=13.7
Q ss_pred CCCcchhHHhh-cCcccccceecc
Q 041025 76 FQPLKEKQKEN-QKPQKRKWLKVS 98 (99)
Q Consensus 76 ~~Pl~~~~~e~-~~~~~~~~~~~~ 98 (99)
...+-.|.... =.||||.|+|+-
T Consensus 187 ~EGvV~K~~~s~Y~~G~r~W~K~K 210 (213)
T cd07902 187 LEGLVLKDLKSVYEPGKRHWLKVK 210 (213)
T ss_pred CCeEEEeCCCCCccCCCCCceEeC
Confidence 34444443332 258999999973
No 57
>cd07905 Adenylation_DNA_ligase_LigC Adenylation domain of Mycobacterium tuberculosis LigC-like ATP-dependent DNA ligases. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of ATP-dependent DNA ligases similar to Mycobacterium tuberculosis LigC. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. Members of this group contain adenylation and C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains, comprising a catalytic core unit that is
Probab=27.48 E-value=27 Score=25.57 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=13.6
Q ss_pred CCCcchhHHhh-cCcccccceecc
Q 041025 76 FQPLKEKQKEN-QKPQKRKWLKVS 98 (99)
Q Consensus 76 ~~Pl~~~~~e~-~~~~~~~~~~~~ 98 (99)
++.+-.|-... =+||||.|+|+-
T Consensus 168 ~EGiv~K~~~s~Y~~Gr~~WlK~K 191 (194)
T cd07905 168 LEGVVAKRLDGPYRPGERAMLKVK 191 (194)
T ss_pred CceEEEeCCCCCcCCCCCcEEEEe
Confidence 34444443322 258889999974
Done!