BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041026
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWS-SGKSPFSLLDVAAKYGHGEIS 65
V+ DT +PL LA + + +++E +L++ + SG +P L AAK GH EI
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHL---AAKRGHLEI- 95
Query: 66 AKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQ 114
++ Y +N + G TPLH AA G L VL+ + + + +
Sbjct: 96 VEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDK 144
Score = 32.7 bits (73), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 46 GKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDF 105
G +P L AA+ GH EI ++ +N + G TPLH AA+ G L VL+ +
Sbjct: 47 GDTPLHL---AARVGHLEI-VEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 106 AKHIPSTSQPPVDLLRMENAMGNTVLREALFMLG 139
+ + L + G+ + E L G
Sbjct: 103 GADVNADDTIGSTPLHLAADTGHLEIVEVLLKYG 136
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISA 66
V+ ND +PL L + + +++E +L+ + ++ +S KS ++ L +AA GH EI
Sbjct: 40 VNANDWFGITPLHLVVNNGHLEIIEVLLK-YAADVN-ASDKSGWTPLHLAAYRGHLEI-V 96
Query: 67 KIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQ 114
++ Y +N + QG TPLH AA G L VL+ + + + +
Sbjct: 97 EVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDK 144
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 60 GHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDL 119
GH EI ++ Y +N ++ G TPLH AA G L VL+ + + +
Sbjct: 58 GHLEI-IEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTP 116
Query: 120 LRMENAMGNTVLREALFMLG 139
L + G+ + E L G
Sbjct: 117 LHLAAEDGHLEIVEVLLKYG 136
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 7 VHLNDTTNKSPLSLAIEMENTDVLEYILR-SLPSGISWSSGKSPFSLLDVAAKYGHGEIS 65
V+ D + K+PL LA + +++E +L+ + G +P L AA YGH EI
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHL---AALYGHLEI- 95
Query: 66 AKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQ 114
++ +N T+ G TPLH AA AG L VL+ + + + +
Sbjct: 96 VEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDK 144
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 44 SSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
SGK+P L AA GH EI ++ + +N + GDTPLH AA G L VL+
Sbjct: 45 DSGKTPLHL---AAIKGHLEI-VEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLL 100
Query: 104 DFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLG 139
+ +T L + G+ + E L G
Sbjct: 101 KNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYG 136
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 76 INKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREAL 135
+N ++ G TPLH AA G L VL+ + + + L + G+ + E L
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVL 99
Query: 136 FMLGRVNVRRTNT 148
G +V T+T
Sbjct: 100 LKNG-ADVNATDT 111
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 10/120 (8%)
Query: 7 VHLNDTTNKSPLSLAIEMENTDVLEYIL-RSLPSGISWSSGKSPFSLLDVAAKYGHGEIS 65
V+ +D+ K+PL LA E + +V++ +L + S GK+P L AA+ GH E+
Sbjct: 30 VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHL---AAENGHKEV- 85
Query: 66 AKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTS----QPPVDLLR 121
K+ N ++ G TPLH AA G +L+ P+TS + P+DL R
Sbjct: 86 VKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNTSDSDGRTPLDLAR 144
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 21 AIEMENTDVLEYILRSLPS-GISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKT 79
A E N D ++ +L + S S GK+P L AA+ GH E+ K+ N
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHL---AAENGHKEV-VKLLLSQGADPNAK 66
Query: 80 NNQGDTPLHCAARAGKLNTATVLV 103
++ G TPLH AA G +L+
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLLL 90
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSS-GKSPFSLLDVAAKYGHGEIS 65
V+ D +PL LA + + +++E +L+ +W + G +P L AA GH EI
Sbjct: 40 VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHL---AADNGHLEI- 95
Query: 66 AKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQ 114
++ + +N + +G TPLH AA G L VL+ + + + +
Sbjct: 96 VEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDK 144
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 46 GKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDF 105
G +P L AAK GH EI ++ Y +N +N G TPLH AA G L VL+
Sbjct: 47 GHTPLHL---AAKTGHLEI-VEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKH 102
Query: 106 AKHIPSTSQPPVDLLRMENAMGNTVLREALFMLG 139
+ + L + G+ + E L G
Sbjct: 103 GADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYG 136
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 76 INKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREAL 135
+N T+ G TPLH AA+ G L VL+ + + + L + G+ + E L
Sbjct: 40 VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVL 99
Query: 136 FMLG 139
G
Sbjct: 100 LKHG 103
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPS-GISWSSGKSPFSLLDVAAKYGHGEIS 65
V+ D ++PL LA + +V++ +L + +G++P L AA+ GH E+
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL---AARNGHLEV- 83
Query: 66 AKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
K+ +N + G TPLH AAR G L +L++
Sbjct: 84 VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 15 KSPLSLAIEMENTDVLEYILRSLPS-GISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYP 73
++PL LA + +V++ +L + +G++P L AA+ GH E+ K+
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL---AARNGHLEV-VKLLLEAG 58
Query: 74 FFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
+N + G TPLH AAR G L +L++
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 45 SGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
+G++P L AA+ GH E+ K+ +N + G TPLH AAR G L +L++
Sbjct: 1 NGRTPLHL---AARNGHLEV-VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 56
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 11 DTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSS-GKSPFSLLDVAAKYGHGEISAKIA 69
D +PL LA + +++E +L++ ++ + G +P L AA +GH EI ++
Sbjct: 44 DVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHL---AAHFGHLEI-VEVL 99
Query: 70 QYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQ 114
+N ++ G TPLH AA G L VL+ + + + +
Sbjct: 100 LKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDK 144
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 46 GKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDF 105
G +P L AA +GH EI ++ +N + G TPLH AA G L VL+
Sbjct: 47 GWTPLHL---AAYWGHLEI-VEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKN 102
Query: 106 AKHIPSTSQPPVDLLRMENAMGNTVLREALFMLG 139
+ + + L + G+ + E L G
Sbjct: 103 GADVNAKDDNGITPLHLAANRGHLEIVEVLLKYG 136
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPS-GISWSSGKSPFSLLDVAAKYGHGEIS 65
V+ D +PL LA + +++E +L++ S +G +P L AA GH EI
Sbjct: 40 VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHL---AAATGHLEI- 95
Query: 66 AKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
++ + +N +N G TPLH AA+ G L VL+
Sbjct: 96 VEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLL 133
Score = 33.1 bits (74), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 76 INKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREAL 135
+N T+N G TPLH AA G L VL+ + ++ + L + A G+ + E L
Sbjct: 40 VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVL 99
Query: 136 FMLG 139
G
Sbjct: 100 LKHG 103
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 5 NLVHLNDTTNKSPLSLAIEMENTDVLEY-ILRSLPSGISWSSGKSPFSLLDVAAKYGHGE 63
N ++ D SPL A + V+E I+R + +P L AA +GH +
Sbjct: 25 NDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHL---AASHGHRD 81
Query: 64 ISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
I K+ QY IN N G+ PLH A G+ A LV
Sbjct: 82 IVQKLLQYKA-DINAVNEHGNVPLHYACFWGQDQVAEDLV 120
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 76 INKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQ 114
IN N DTPLH AA G + L+ + I + ++
Sbjct: 60 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE 98
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 5 NLVHLNDTTNKSPLSLAIEMENTDVLEY-ILRSLPSGISWSSGKSPFSLLDVAAKYGHGE 63
N ++ D SPL A + V+E I+R + +P L AA +GH +
Sbjct: 30 NDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHL---AASHGHRD 86
Query: 64 ISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
I K+ QY IN N G+ PLH A G+ A LV
Sbjct: 87 IVQKLLQYKA-DINAVNEHGNVPLHYACFWGQDQVAEDLV 125
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 15 KSPLSLAIEMENTDVLEYILRSLPS-GISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYP 73
++PL LA + +V++ +L + +G++P L AA+ GH E+ K+
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL---AARNGHLEV-VKLLLEAG 58
Query: 74 FFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
+N + G TPLH AAR G L +L++
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 45 SGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
+G++P L AA+ GH E+ K+ +N + G TPLH AAR G L +L++
Sbjct: 1 NGRTPLHL---AARNGHLEV-VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 56
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSS----GKSPFSLLDVAAKYGHG 62
V+ D + +PL LA + +++E +L+ G ++ G +P L AA GH
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKH---GADVNAIDIMGSTPLHL---AALIGHL 93
Query: 63 EISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
EI ++ + +N + GDTPLH AA G L VL+
Sbjct: 94 EI-VEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWS-SGKSPFSLLDVAAKYGHGEIS 65
V+ D + +PL LA + +++E +L+ + G +P L AA GH EI
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHL---AALIGHLEI- 95
Query: 66 AKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
++ + +N + GDTPLH AA G L VL+
Sbjct: 96 VEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 11 DTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKS-PFSLLDVAAKYGHGEISAKIA 69
D T +PL LA + +++E +L+ G + F+ L +AA GH EI ++
Sbjct: 44 DNTGLTPLHLAAVSGHLEIVEVLLKH---GADVDAADVYGFTPLHLAAMTGHLEI-VEVL 99
Query: 70 QYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQ 114
Y +N + G TPLH AA G L VL+ + + + +
Sbjct: 100 LKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDK 144
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%)
Query: 76 INKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREAL 135
+N +N G TPLH AA +G L VL+ + + L + G+ + E L
Sbjct: 40 VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVL 99
Query: 136 FMLG 139
G
Sbjct: 100 LKYG 103
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 44 SSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
++G +P L AA GH EI ++ + ++ + G TPLH AA G L VL+
Sbjct: 45 NTGLTPLHL---AAVSGHLEI-VEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLL 100
Query: 104 DFAKHIPS---TSQPPVDLLRMENAMGNTVLREALFMLG 139
+ + + T P+ L E G+ + E L G
Sbjct: 101 KYGADVNAFDMTGSTPLHLAADE---GHLEIVEVLLKYG 136
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 44 SSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
+G +P L AAK GH EI ++ + +N +++ G TPLH AA G L VL+
Sbjct: 45 DAGVTPLHL---AAKRGHLEI-VEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLL 100
Query: 104 DFAKHIPSTSQ 114
++ + + +
Sbjct: 101 EYGADVNAQDK 111
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 76 INKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREAL 135
+N ++ G TPLH AA+ G L VL+ + ++ L + +G+ + E L
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVL 99
Query: 136 FMLG 139
G
Sbjct: 100 LEYG 103
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 16 SPLSLAIEMENTDVLEYIL-RSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPF 74
+PL +A M + +++ +L R +S ++P L +AA+ GH E++ + Q
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETP---LHMAARAGHTEVAKYLLQNKAK 72
Query: 75 FINKTNNQGDTPLHCAARAGKLNTATVLVD 104
+N TPLHCAAR G N +L++
Sbjct: 73 -VNAKAKDDQTPLHCAARIGHTNMVKLLLE 101
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 14 NKSPLSLAIEMENTDVLEYILRSLPS-GISWSSGKSPFSLLDVAAKYGHGEISAKIAQYY 72
+++PL A + +T++++ +L + + ++ ++G +P L +AA+ GH E + +
Sbjct: 80 DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP---LHIAAREGHVETVLALLEKE 136
Query: 73 PFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKH 108
T +G TPLH AA+ GK+ A +L++ H
Sbjct: 137 ASQACMTK-KGFTPLHVAAKYGKVRVAELLLERDAH 171
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
Query: 16 SPLSLAIEMENTDVLEYILRSLPSGISWS-SGKSPFSLLDVAAKYGHGEISAKIAQYYPF 74
+PL +A + +V +L+ S + S G +P L AA+ GH E+ A +
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHL---AAQEGHAEMVALLLSKQAN 270
Query: 75 FINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREA 134
N N G TPLH A+ G + A VL+ + +T++ L + + GN L +
Sbjct: 271 G-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKF 329
Query: 135 LF 136
L
Sbjct: 330 LL 331
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 15 KSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPF 74
++PL +A +T+V +Y+L++ + K + L AA+ GH + K+
Sbjct: 48 ETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTPLHCAARIGHTNM-VKLLLENNA 104
Query: 75 FINKTNNQGDTPLHCAARAGKLNTATVLVD 104
N G TPLH AAR G + T L++
Sbjct: 105 NPNLATTAGHTPLHIAAREGHVETVLALLE 134
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 16 SPLSLAIEMENTDVLEYILRSLPSG-ISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPF 74
+PL LA + + +++ +L +G + SG +P L+ A+ GH + A + +
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLV---AQEGHVPV-ADVLIKHGV 302
Query: 75 FINKTNNQGDTPLHCAARAGKLNTATVLVD 104
++ T G TPLH A+ G + L+
Sbjct: 303 MVDATTRMGYTPLHVASHYGNIKLVKFLLQ 332
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 9 LNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKI 68
L T +PL +A + + + +L S + K F+ L VAAKYG ++ +
Sbjct: 108 LATTAGHTPLHIAAREGHVETVLALLEKEASQACMT--KKGFTPLHVAAKYGKVRVAELL 165
Query: 69 AQY--YPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
+ +P N G TPLH A L+ +L+
Sbjct: 166 LERDAHP---NAAGKNGLTPLHVAVHHNNLDIVKLLL 199
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 11 DTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSS--GKSPFSLLDVAAKYGHGEISAKI 68
D T +PL LA + +++E +L+ + + S G +P L AA +GH EI ++
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKH-GADVDASDVFGYTPLHL---AAYWGHLEI-VEV 98
Query: 69 AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
+N ++ G TPLH AA+ G L VL+
Sbjct: 99 LLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLL 133
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 76 INKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTS 113
+N +N G TPLH AA +G L VL+ + ++
Sbjct: 40 VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 44 SSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
+G +P L AAK GH EI ++ + +N ++ G TPLH AA G L VL+
Sbjct: 45 DAGVTPLHL---AAKRGHLEI-VEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLL 100
Query: 104 DFAKHIPSTSQ 114
++ + + +
Sbjct: 101 EYGADVNAQDK 111
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 76 INKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTS 113
+N ++ G TPLH AA+ G L VL+ + ++
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 44 SSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
+G +P L AAK GH EI ++ + +N + G TPLH AA G L VL+
Sbjct: 45 DAGVTPLHL---AAKRGHLEI-VEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLL 100
Query: 104 DFAKHIPSTSQ 114
++ + + +
Sbjct: 101 EYGADVNAQDK 111
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 76 INKTNNQGDTPLHCAARAGKLNTATVLV 103
+N ++ G TPLH AA+ G L VL+
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLL 67
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 47 KSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFA 106
K ++ L +AA+ GH EI ++ +N + G TPLH AAR G L VL+
Sbjct: 45 KDGYTPLHLAAREGHLEI-VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 103
Query: 107 KHIPSTSQPPVDLLRMENAMGNTVLREALFMLG 139
+ + + L + G+ + E L G
Sbjct: 104 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 136
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%)
Query: 76 INKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREAL 135
+N + G TPLH AAR G L VL+ + + + L + G+ + E L
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 99
Query: 136 FMLG 139
G
Sbjct: 100 LKAG 103
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWS-SGKSPFSLLDVAAKYGHGEIS 65
V+ D + +PL LA + +++E +L++ + +G +P L AA +GH EI
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRL---AALFGHLEI- 95
Query: 66 AKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
++ +N + +G TPLH AA G L VL+
Sbjct: 96 VEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL 133
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 76 INKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREAL 135
+N + G TPLH AA G L VL+ + + + LR+ G+ + E L
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVL 99
Query: 136 F 136
Sbjct: 100 L 100
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 44 SSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
+ K ++ L +AA+ GH EI ++ +N + G TPLH AAR G L VL+
Sbjct: 30 AKDKDGYTPLHLAAREGHLEI-VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 88
Query: 104 DFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLG 139
+ + + L + G+ + E L G
Sbjct: 89 KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%)
Query: 76 INKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREAL 135
+N + G TPLH AAR G L VL+ + + + L + G+ + E L
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 136 FMLG 139
G
Sbjct: 88 LKAG 91
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 47 KSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFA 106
K ++ L +AA+ GH EI ++ +N + G TPLH AAR G L VL+
Sbjct: 33 KDGYTPLHLAAREGHLEI-VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 107 KHIPSTSQPPVDLLRMENAMGNTVLREALFMLG 139
+ + + L + G+ + E L G
Sbjct: 92 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%)
Query: 76 INKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREAL 135
+N + G TPLH AAR G L VL+ + + + L + G+ + E L
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 136 FMLG 139
G
Sbjct: 88 LKAG 91
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 46 GKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
G +P L AA Y H EI ++ + +N +N G TPLH AA G L VL+
Sbjct: 47 GNTPLHL---AADYDHLEI-VEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLL 100
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 7 VHLNDTTNKSPLSLAIEMENTDVLEYILR-SLPSGISWSSGKSPFSLLDVAAKYGHGEIS 65
V+ ND +PL LA + ++ +++E +L+ + G +P L AA +GH EI
Sbjct: 40 VNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHL---AALFGHLEI- 95
Query: 66 AKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVL 102
++ + +N + G T + G + A +L
Sbjct: 96 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPS-GISWSSGKSPFSLLDVAAKYGHGEIS 65
V+ +D +PL LA + +++E +L++ S G +P L AA GH E+
Sbjct: 40 VNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHL---AADRGHLEV- 95
Query: 66 AKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
++ +N ++ G TPLH AA G L VL+
Sbjct: 96 VEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLL 133
Score = 29.3 bits (64), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 53 LDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPST 112
L +AA +GH EI ++ +N ++ G TPLH AA G L VL+ + +
Sbjct: 51 LHLAAYFGHLEI-VEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNAN 109
Query: 113 SQPPVDLLRMENAMGNTVLREALFMLG 139
L + +G+ + E L G
Sbjct: 110 DHNGFTPLHLAANIGHLEIVEVLLKHG 136
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 33.5 bits (75), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 76 INKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIP---STSQPPVDL 119
IN+ +N+G PLH AA G L+ A L+ H+ S P+D+
Sbjct: 99 INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 47 KSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
KS + L VAA G+ E+ + Q + +N + G TPLH AA GK +LV+
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 32.7 bits (73), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 46 GKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDF 105
G++P L +AA GH EI ++ +N + G TPLH AA G L VL+ +
Sbjct: 35 GRTP---LHMAAAVGHLEI-VEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKY 90
Query: 106 AKHIPSTSQPPVDLLRMENAMGNTVLREALFMLG 139
+ + + L + G+ + E L G
Sbjct: 91 GADVNAKDATGITPLYLAAYWGHLEIVEVLLKHG 124
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 77 NKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALF 136
N ++ G TPLH AA G L VL+ + + L + ++G+ + E L
Sbjct: 29 NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLL 88
Query: 137 MLG 139
G
Sbjct: 89 KYG 91
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 11 DTTNKSPLSLAIEMENTDVLEYILR-SLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIA 69
DT +PL LA + + +++E +L+ ++G +P L AA +GH EI ++
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYL---AAYWGHLEI-VEVL 120
Query: 70 QYYPFFINKTNNQGDTPLHCAARAGKLNTATVL 102
+ +N + G T + G + A +L
Sbjct: 121 LKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 32.7 bits (73), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 45 SGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
+G +P L AA +GH EI ++ +N ++ G TPLH AAR G L VL+
Sbjct: 46 TGWTPLHL---AAHFGHLEI-VEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLL 100
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 32.3 bits (72), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 30 LEYILR--SLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPL 87
+EY+L+ S P+ + +G +P L A +GH ++ + Q+ +N T Q D+PL
Sbjct: 26 VEYLLQNGSDPN-VKDHAGWTP---LHEACNHGHLKVVELLLQH-KALVNTTGYQNDSPL 80
Query: 88 HCAARAGKLNTATVLVDFA 106
H AA+ G ++ +L+ +
Sbjct: 81 HDAAKNGHVDIVKLLLSYG 99
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 60 GHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
GH EI + Q+ +N ++ G TPLHCAA + LV+
Sbjct: 81 GHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 60 GHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
GH EI + Q+ +N ++ G TPLHCAA + LV+
Sbjct: 81 GHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 44 SSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
G +P L AA GH EI ++ + +N + G TPLH AA G L VL+
Sbjct: 45 DQGSTPLHL---AAWIGHPEI-VEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLL 100
Query: 104 DFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLG 139
+ + + + L + G+ + E L G
Sbjct: 101 KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHG 136
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 76 INKTNNQGDTPLHCAARAGKLNTATVLV 103
+N ++QG TPLH AA G VL+
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVLL 67
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 81 NQG---DTPLHCAARAGKLNTATVLVDFAKHIPSTS---QPPVDLLRMENAMGNTVL-RE 133
NQG D+PLH AR A +L+DF + + + PV+L+ E+ + L RE
Sbjct: 161 NQGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLERE 220
Query: 134 ---ALFMLGRVNVRRT 146
+L L R+ +R+
Sbjct: 221 GPPSLMQLCRLRIRKC 236
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 47 KSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFA 106
++ F+++ AA+ G + + ++ +N +N+G+ PLH AA+ G L LV
Sbjct: 68 RTGFAVIHDAARAGQLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLV--- 123
Query: 107 KHIPS 111
KH S
Sbjct: 124 KHTAS 128
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 46 GKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
G +P L AA GH EI ++ +N T N G TPLH AA A L VL+
Sbjct: 47 GHTPLHL---AAMLGHLEI-VEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLL 100
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 47 KSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFA 106
++ F+++ AA+ G + + ++ +N +N+G+ PLH AA+ G L LV
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLV--- 123
Query: 107 KHIPS 111
KH S
Sbjct: 124 KHTAS 128
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 47 KSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFA 106
++ F+++ AA+ G + + ++ +N +N+G+ PLH AA+ G L LV
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLV--- 123
Query: 107 KHIPS 111
KH S
Sbjct: 124 KHTAS 128
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 80 NNQGDTPLHCAARAGKLNTATVLVD 104
NN+ +TPL AAR G TA VL+D
Sbjct: 152 NNKEETPLFLAAREGSYETAKVLLD 176
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 53 LDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPST 112
L VAA+ H ++ ++ + +N ++ G T LH AA AG L T +L+ +
Sbjct: 251 LHVAAERAHNDV-MEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG------ 303
Query: 113 SQPPVDLLRMENA--MGNTVLREAL 135
S P + L+ A MGN +++ L
Sbjct: 304 SDPSIISLQGFTAAQMGNEAVQQIL 328
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 80 NNQGDTPLHCAARAGKLNTATVLVD 104
NN+ +TPL AAR G TA VL+D
Sbjct: 78 NNKEETPLFLAAREGSYETAKVLLD 102
>pdb|3F85|A Chain A, Structure Of Fusion Complex Of Homo Trimeric Major Pilin
Subunits Cfab Of CfaI FIMBIRAE FROM ETEC E. COLI
Length = 463
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 2 KVLNLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISW 43
+V+ VH ND T K + LA + TDVL ++ +P +SW
Sbjct: 31 RVMTQVHTNDATKKVIVKLADTPQLTDVLNSTVQ-MPISVSW 71
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 2 KVLNLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISW 43
+V+ VH ND T K + LA + TDVL ++ +P +SW
Sbjct: 182 RVMTQVHTNDATKKVIVKLADTPQLTDVLNSTVQ-MPISVSW 222
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 2 KVLNLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISW 43
+V+ VH ND T K + LA + TDVL ++ +P +SW
Sbjct: 333 RVMTQVHTNDATKKVIVKLADTPQLTDVLNSTVQ-MPISVSW 373
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 80 NNQGDTPLHCAARAGKLNTATVLVD 104
NN+ +TPL AAR G TA VL+D
Sbjct: 155 NNREETPLFLAAREGSYETAKVLLD 179
>pdb|3F84|A Chain A, Structure Of Fusion Complex Of Major Pilin Cfab And
Major Pilin Cfab Of CfaI PILUS FROM ETEC E. COLI
pdb|3F84|B Chain B, Structure Of Fusion Complex Of Major Pilin Cfab And
Major Pilin Cfab Of CfaI PILUS FROM ETEC E. COLI
Length = 312
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 2 KVLNLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISW 43
+V+ VH ND T K + LA + TDVL ++ +P +SW
Sbjct: 31 RVMTQVHTNDATKKVIVKLADTPQLTDVLNSTVQ-MPISVSW 71
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 2 KVLNLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISW 43
+V+ VH ND T K + LA + TDVL ++ +P +SW
Sbjct: 182 RVMTQVHTNDATKKVIVKLADTPQLTDVLNSTVQ-MPISVSW 222
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 29.6 bits (65), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 80 NNQGDTPLHCAARAGKLNTATVLVD 104
NN+ +TPL AAR G TA VL+D
Sbjct: 187 NNREETPLFLAAREGSYETAKVLLD 211
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 29.6 bits (65), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 80 NNQGDTPLHCAARAGKLNTATVLVD 104
NN+ +TPL AAR G TA VL+D
Sbjct: 188 NNREETPLFLAAREGSYETAKVLLD 212
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 76 INKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREAL 135
+N T++ G TPLH AA G+L VL+ + ++ + L + G+ + E L
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVL 91
Query: 136 FMLG 139
G
Sbjct: 92 LKHG 95
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 80 NNQGDTPLHCAARAGKLNTATVLVD 104
NN+ +TPL AAR G TA VL+D
Sbjct: 187 NNREETPLFLAAREGSYETAKVLLD 211
>pdb|3F83|A Chain A, Structure Of Fusion Complex Of The Minor Pilin Cfae And
Major Pilin Cfab Of CfaI PILI FROM ETEC E. COLI
Length = 519
Score = 29.3 bits (64), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 2 KVLNLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISW 43
+V+ VH ND T K + LA + TDVL ++ +P +SW
Sbjct: 386 RVMTQVHTNDATKKVIVKLADTPQLTDVLNSTVQ-MPISVSW 426
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 29.3 bits (64), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 76 INKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPS 111
+N +N+G+ PLH AA+ G L LV KH S
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLV---KHTAS 128
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 29.3 bits (64), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 76 INKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPS 111
+N +N+G+ PLH AA+ G L LV KH S
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLV---KHTAS 128
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 17 PLSLAIEMENTDVLEYILRS--LPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPF 74
PL LA + + V++ +L S P+ S G +P L A GH E+ A + Q+
Sbjct: 122 PLHLACQQGHFQVVKCLLDSNAKPNKKDLS-GNTP---LIYACSGGHHELVALLLQHGAS 177
Query: 75 FINKTNNQGDTPLH 88
IN +NN+G+T LH
Sbjct: 178 -INASNNKGNTALH 190
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 29.3 bits (64), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 76 INKTNNQGDTPLHCAARAGKLNTATVLV 103
+N + G TPLH AAR G L VL+
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLL 55
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 15 KSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPF 74
++ L LA+ DV++ +L + + ++ +L+ A ++GH EI+ +
Sbjct: 184 QTALMLAVSHGRVDVVKALL-ACEADVNVQDDDGSTALM-CACEHGHKEIAGLLLAVPSC 241
Query: 75 FINKTNNQGDTPLHCAARAGKLNTATVL 102
I+ T+ G T L A AG+ A++L
Sbjct: 242 DISLTDRDGSTALMVALDAGQSEIASML 269
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 77 NKTNNQGDTPLHCAARAGKLNTATVLVDFAKHI---PSTSQPPVDL 119
N + G +P+H AAR G L+T VLV+ + ST P+ L
Sbjct: 68 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHL 113
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 76 INKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREAL 135
+N + G TPLH AA+ G L VL+ + + + + L + G+ + E L
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVL 99
Query: 136 FMLG 139
G
Sbjct: 100 LKHG 103
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 77 NKTNNQGDTPLHCAARAGKLNTATVLVDFAKHI---PSTSQPPVDL 119
N + G +P+H AAR G L+T VLV+ + ST P+ L
Sbjct: 70 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHL 115
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 11 DTTNKSPLSLAIEMENTDVLEYILRSLPSGIS--WSSGKSPFSLLDVAAKYG-HGEISAK 67
D T ++PL A+ + V + +LR+ + ++ G +P L AA+ G +
Sbjct: 81 DNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLIL---AARLAIEGMVEDL 137
Query: 68 IAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVD 118
I IN +N G T LH AA NT V + H +Q D
Sbjct: 138 ITADAD--INAADNSGKTALHWAAAVN--NTEAVNILLMHHANRDAQDDKD 184
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 77 NKTNNQGDTPLHCAARAGKLNTATVLVDFAKHI 109
N + G +P+H AAR G L+T VLV+ +
Sbjct: 68 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV 100
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 53 LDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPST 112
L A GH EI + Q +N ++ G +PLH AA AG+ L+ H+ +
Sbjct: 44 LHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAV 102
Query: 113 SQ 114
+Q
Sbjct: 103 NQ 104
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 77 NKTNNQGDTPLHCAARAGKLNTATVLVDFAKHI 109
N + G +P+H AAR G L+T VLV+ +
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV 94
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 40 GISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTA 99
G W S K + L AAK GH E K+ +N + G+TPLH AA+ G
Sbjct: 1 GHMWGS-KDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIV 58
Query: 100 TVLV 103
+L+
Sbjct: 59 KLLL 62
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 71 YYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
YY N + +G+TPLH A ++ A +LV
Sbjct: 160 YYKASTNIQDTEGNTPLHLACDEERVEEAKLLV 192
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 71 YYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
YY N + +G+TPLH A ++ A +LV
Sbjct: 161 YYKASTNIQDTEGNTPLHLACDEERVEEAKLLV 193
>pdb|3E23|A Chain A, Crystal Structure Of The Rpa2492 Protein In Complex With
Sam From Rhodopseudomonas Palustris, Northeast
Structural Genomics Consortium Target Rpr299
Length = 211
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 12/51 (23%)
Query: 25 ENTDVLEYILRSL-PSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPF 74
E DVL+ I R+L P G+ ++S KS G GE K+A+YY +
Sbjct: 119 ELADVLKLIWRALKPGGLFYASYKS-----------GEGEGRDKLARYYNY 158
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISA 66
V+ D +P+ A E ++ D+++ +L S S I+ + L AA G +I A
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLL-SKGSDINIRDNEENICL-HWAAFSGCVDI-A 160
Query: 67 KIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
+I ++ N GD+PLH AAR + + + +
Sbjct: 161 EILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFL 197
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 75 FINKTNNQGDTPLHCAARAGKLNTATVLVDFA 106
+N ++ GDT L+ AAR G ++ L+D+
Sbjct: 275 MLNAQDSNGDTCLNIAARLGNISIVDALLDYG 306
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 76 INKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTS 113
+N ++ G TPLHCAA LV I +T+
Sbjct: 80 VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT 117
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 53 LDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPST 112
L A GH EI + Q +N ++ G +PLH AA AG L+ H+ +
Sbjct: 44 LHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV 102
Query: 113 SQ 114
+Q
Sbjct: 103 NQ 104
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 52 LLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPS 111
LL+ A E+ +A PF T+ G +PLH AA+ G +T VL+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGAPF---TTDWLGTSPLHLAAQYGHFSTTEVLLRAG--VSR 60
Query: 112 TSQPPVDL--LRMENAMGNTVLREALFMLG 139
++ VD L M + G+ + E L G
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLLKHG 90
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 46 GKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDF 105
G +P L A +GH EI ++ +N + G TPLH AA G L A VL+
Sbjct: 47 GLTPLYL---ATAHGHLEI-VEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH 102
Query: 106 AKHIPSTSQPPVDLLRMENAMGNTVLREAL 135
+ + + + GN L E L
Sbjct: 103 GADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 47 KSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
K+ + L A GH +I + +N+ N GDT LH AA G + +L+
Sbjct: 104 KAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 53 LDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHI--- 109
L +AAK + +K+ ++ +++ G+T LH AA L A VL++ A +
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE 66
Query: 110 PSTSQ 114
P TS+
Sbjct: 67 PMTSE 71
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 80 NNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQ 114
+ G TPLH AAR G L +L++ + + +
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK 88
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 80 NNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQ 114
+ G TPLH AAR G L +L++ + + +
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDK 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,450,479
Number of Sequences: 62578
Number of extensions: 173629
Number of successful extensions: 721
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 542
Number of HSP's gapped (non-prelim): 163
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)