BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041028
         (283 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FOM|B Chain B, Dengue Virus Ns2bNS3 PROTEASE
          Length = 185

 Score = 30.8 bits (68), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 25/41 (60%)

Query: 60  RTRSPWSRLKKEKLQIICGKKMEGDYAEGSELKWLAMDVAK 100
           R    W+ +KK+ +    G K+EG++ EG E++ LA++  K
Sbjct: 64  RIEPSWADVKKDLISYGGGWKLEGEWKEGEEVQVLALEPGK 104


>pdb|1G74|A Chain A, Toward Changing Specificity: Adipocyte Lipid Binding
          Protein Mutant, Oleic Acid Bound Form
 pdb|1G7N|A Chain A, Toward Changing Specificity: Adipocyte Lipid Binding
          Protein Mutant, Apo Form
          Length = 131

 Score = 30.0 bits (66), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 12/18 (66%), Positives = 16/18 (88%)

Query: 43 EIAFKLGLKFDEESESGR 60
          EI+FKLG++FDEE+  GR
Sbjct: 61 EISFKLGVEFDEETVDGR 78


>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
           Decarboxylase
 pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
           Decarboxylase
          Length = 475

 Score = 29.3 bits (64), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 120 EWKDALEQLRR---PSSTNFKDVQPAAYKAMELGYNKLEGDELKSTFLLIGYTAIAS 173
           +W+D ++ + R   P  T++   +  AY      Y  +  D L      IG+T IAS
Sbjct: 52  KWQDVMQDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIAS 108


>pdb|3FDH|A Chain A, Crystal Structure Of A SusdRAGB FAMILY PROTEIN (BT_2033)
           FROM Bacteroides Thetaiotaomicron Vpi-5482 At 1.75 A
           Resolution
          Length = 499

 Score = 27.7 bits (60), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 215 DHTSKNEKLFSIHDVVRDVAISIASGEQNVFSAT 248
           DHT+     F + DV+   A S ASG+ N ++++
Sbjct: 14  DHTTSVASRFILADVITSTAFSNASGDINTYASS 47


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,729,907
Number of Sequences: 62578
Number of extensions: 289815
Number of successful extensions: 739
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 735
Number of HSP's gapped (non-prelim): 5
length of query: 283
length of database: 14,973,337
effective HSP length: 98
effective length of query: 185
effective length of database: 8,840,693
effective search space: 1635528205
effective search space used: 1635528205
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)