Query 041028
Match_columns 283
No_of_seqs 232 out of 1363
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 04:29:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.7E-37 1.2E-41 287.2 13.1 231 1-243 160-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 4.6E-29 1.6E-33 251.7 18.5 227 1-241 155-452 (1249)
3 1vt4_I APAF-1 related killer D 99.9 4.4E-27 1.5E-31 226.3 12.0 206 1-234 158-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.9 7.9E-26 2.7E-30 212.5 15.6 224 1-239 155-450 (591)
5 2qen_A Walker-type ATPase; unk 98.0 0.00014 4.7E-09 62.8 15.1 116 93-235 226-349 (350)
6 1w5s_A Origin recognition comp 97.6 0.00013 4.4E-09 64.6 7.8 76 1-76 60-143 (412)
7 2qby_B CDC6 homolog 3, cell di 96.9 0.0011 3.6E-08 58.1 6.0 48 1-48 53-107 (384)
8 2v1u_A Cell division control p 96.9 0.0039 1.3E-07 54.3 9.4 68 1-68 52-125 (387)
9 1fnn_A CDC6P, cell division co 96.8 0.0077 2.6E-07 52.5 10.2 49 2-51 53-101 (389)
10 2qby_A CDC6 homolog 1, cell di 96.7 0.0025 8.5E-08 55.5 6.1 50 1-50 53-103 (386)
11 1hqc_A RUVB; extended AAA-ATPa 96.5 0.0083 2.8E-07 51.1 8.1 36 2-42 47-82 (324)
12 3te6_A Regulatory protein SIR3 95.8 0.036 1.2E-06 47.4 8.4 49 2-50 54-107 (318)
13 2fna_A Conserved hypothetical 94.3 0.052 1.8E-06 46.4 5.4 114 96-234 233-356 (357)
14 3ec2_A DNA replication protein 94.3 0.043 1.5E-06 42.4 4.3 17 2-18 47-63 (180)
15 2w58_A DNAI, primosome compone 94.1 0.035 1.2E-06 43.7 3.5 28 2-31 63-90 (202)
16 2cvh_A DNA repair and recombin 94.0 0.16 5.5E-06 40.2 7.4 41 2-48 29-69 (220)
17 1qhx_A CPT, protein (chloramph 93.8 0.028 9.7E-07 43.2 2.4 18 1-18 11-28 (178)
18 1xp8_A RECA protein, recombina 93.8 0.24 8.3E-06 43.1 8.5 70 2-78 83-160 (366)
19 3hr8_A Protein RECA; alpha and 93.7 0.21 7.2E-06 43.3 8.0 69 2-77 70-146 (356)
20 2chg_A Replication factor C sm 93.5 0.085 2.9E-06 41.5 4.9 38 2-40 47-85 (226)
21 3io5_A Recombination and repai 93.5 0.24 8.1E-06 42.3 7.7 46 2-52 37-82 (333)
22 3cwq_A Para family chromosome 93.5 0.089 3E-06 41.9 4.9 37 2-41 10-46 (209)
23 3bos_A Putative DNA replicatio 93.2 0.052 1.8E-06 43.6 3.1 29 2-32 61-89 (242)
24 2zr9_A Protein RECA, recombina 93.1 0.36 1.2E-05 41.7 8.6 70 2-78 70-147 (349)
25 3bh0_A DNAB-like replicative h 93.1 0.17 5.9E-06 43.0 6.4 43 2-48 77-119 (315)
26 3hjn_A DTMP kinase, thymidylat 93.1 0.17 5.7E-06 40.0 5.9 73 2-76 9-87 (197)
27 2px0_A Flagellar biosynthesis 93.0 0.41 1.4E-05 40.3 8.5 74 2-77 114-189 (296)
28 1u94_A RECA protein, recombina 93.0 0.28 9.6E-06 42.5 7.6 70 2-78 72-149 (356)
29 3kb2_A SPBC2 prophage-derived 92.9 0.046 1.6E-06 41.6 2.3 18 1-18 9-26 (173)
30 3kjh_A CO dehydrogenase/acetyl 92.3 0.12 4.1E-06 41.8 4.2 36 2-39 9-44 (254)
31 4dzz_A Plasmid partitioning pr 92.3 0.13 4.3E-06 40.4 4.2 35 2-38 11-45 (206)
32 3trf_A Shikimate kinase, SK; a 92.3 0.062 2.1E-06 41.5 2.3 18 1-18 13-30 (185)
33 1ly1_A Polynucleotide kinase; 92.3 0.062 2.1E-06 41.1 2.3 15 1-15 10-24 (181)
34 2vhj_A Ntpase P4, P4; non- hyd 92.2 0.051 1.7E-06 46.5 1.8 58 1-78 131-190 (331)
35 1nks_A Adenylate kinase; therm 92.2 0.068 2.3E-06 41.4 2.4 18 1-18 9-26 (194)
36 3vaa_A Shikimate kinase, SK; s 92.1 0.068 2.3E-06 42.1 2.4 18 1-18 33-50 (199)
37 3lw7_A Adenylate kinase relate 92.1 0.059 2E-06 40.9 2.0 13 1-13 9-21 (179)
38 1jbk_A CLPB protein; beta barr 92.1 0.065 2.2E-06 41.1 2.2 17 2-18 52-68 (195)
39 2r8r_A Sensor protein; KDPD, P 92.1 0.07 2.4E-06 43.1 2.4 30 2-33 15-44 (228)
40 1kht_A Adenylate kinase; phosp 91.9 0.077 2.6E-06 41.0 2.4 18 1-18 11-28 (192)
41 1via_A Shikimate kinase; struc 91.8 0.08 2.7E-06 40.6 2.4 18 1-18 12-29 (175)
42 1n0w_A DNA repair protein RAD5 91.7 0.36 1.2E-05 38.8 6.4 48 2-50 33-84 (243)
43 2rhm_A Putative kinase; P-loop 91.7 0.079 2.7E-06 41.1 2.3 18 1-18 13-30 (193)
44 2i1q_A DNA repair and recombin 91.7 0.32 1.1E-05 41.3 6.3 48 2-50 107-168 (322)
45 2jaq_A Deoxyguanosine kinase; 91.6 0.084 2.9E-06 41.3 2.4 18 1-18 8-25 (205)
46 3iij_A Coilin-interacting nucl 91.6 0.084 2.9E-06 40.6 2.3 18 1-18 19-36 (180)
47 3k9g_A PF-32 protein; ssgcid, 91.4 0.47 1.6E-05 38.9 6.9 37 2-41 37-73 (267)
48 1kag_A SKI, shikimate kinase I 91.4 0.092 3.2E-06 40.0 2.4 18 1-18 12-29 (173)
49 2z43_A DNA repair and recombin 91.3 0.47 1.6E-05 40.4 6.9 48 2-50 116-167 (324)
50 3t61_A Gluconokinase; PSI-biol 91.2 0.097 3.3E-06 41.2 2.3 17 1-17 26-42 (202)
51 1zuh_A Shikimate kinase; alpha 91.2 0.1 3.5E-06 39.6 2.4 18 1-18 15-32 (168)
52 2p65_A Hypothetical protein PF 91.1 0.074 2.5E-06 40.7 1.5 17 2-18 52-68 (187)
53 3n70_A Transport activator; si 91.0 0.099 3.4E-06 38.9 2.1 16 2-17 33-48 (145)
54 1zp6_A Hypothetical protein AT 91.0 0.096 3.3E-06 40.6 2.1 16 1-16 17-32 (191)
55 1njg_A DNA polymerase III subu 90.9 0.099 3.4E-06 41.7 2.2 18 2-19 54-71 (250)
56 3t15_A Ribulose bisphosphate c 90.8 0.12 4E-06 43.5 2.6 17 2-18 45-61 (293)
57 3zq6_A Putative arsenical pump 90.8 0.27 9.1E-06 42.0 4.9 37 2-40 23-59 (324)
58 3cm0_A Adenylate kinase; ATP-b 90.7 0.12 4E-06 39.9 2.4 18 1-18 12-29 (186)
59 1e6c_A Shikimate kinase; phosp 90.7 0.12 4.1E-06 39.3 2.4 18 1-18 10-27 (173)
60 1cp2_A CP2, nitrogenase iron p 90.7 0.13 4.3E-06 42.4 2.7 30 2-33 10-39 (269)
61 2yvu_A Probable adenylyl-sulfa 90.6 0.12 4.2E-06 39.9 2.4 19 1-19 21-39 (186)
62 2plr_A DTMP kinase, probable t 90.5 0.13 4.3E-06 40.5 2.4 20 1-20 12-31 (213)
63 2iyv_A Shikimate kinase, SK; t 90.5 0.12 4.3E-06 39.8 2.3 18 1-18 10-27 (184)
64 2ze6_A Isopentenyl transferase 90.5 0.12 4.2E-06 42.4 2.4 18 1-18 9-26 (253)
65 2pt5_A Shikimate kinase, SK; a 90.5 0.13 4.4E-06 38.9 2.4 18 1-18 8-25 (168)
66 1y63_A LMAJ004144AAA protein; 90.4 0.13 4.4E-06 39.9 2.3 16 1-16 18-33 (184)
67 2vli_A Antibiotic resistance p 90.4 0.089 3E-06 40.5 1.4 18 1-18 13-30 (183)
68 1tev_A UMP-CMP kinase; ploop, 90.4 0.13 4.5E-06 39.8 2.4 18 1-18 11-28 (196)
69 2qor_A Guanylate kinase; phosp 90.3 0.13 4.5E-06 40.5 2.4 17 1-17 20-36 (204)
70 1yrb_A ATP(GTP)binding protein 90.2 0.14 4.9E-06 41.8 2.6 18 1-18 22-39 (262)
71 1j8m_F SRP54, signal recogniti 90.2 1.2 4E-05 37.5 8.3 74 2-77 107-187 (297)
72 3iqw_A Tail-anchored protein t 90.2 0.29 9.8E-06 42.0 4.6 37 2-40 25-61 (334)
73 3a4m_A L-seryl-tRNA(SEC) kinas 90.1 0.14 4.7E-06 42.3 2.4 18 1-18 12-29 (260)
74 1knq_A Gluconate kinase; ALFA/ 90.0 0.14 4.9E-06 39.0 2.3 17 1-17 16-32 (175)
75 2afh_E Nitrogenase iron protei 90.0 0.25 8.4E-06 41.2 4.0 30 2-33 11-40 (289)
76 1v5w_A DMC1, meiotic recombina 90.0 0.6 2E-05 40.1 6.4 48 2-50 131-182 (343)
77 3syl_A Protein CBBX; photosynt 89.9 0.16 5.4E-06 42.7 2.7 18 2-19 76-93 (309)
78 3ea0_A ATPase, para family; al 89.9 0.17 5.8E-06 40.9 2.8 31 2-33 14-44 (245)
79 2cdn_A Adenylate kinase; phosp 89.9 0.15 5.1E-06 40.0 2.4 18 1-18 28-45 (201)
80 3end_A Light-independent proto 89.9 0.3 1E-05 41.1 4.5 31 2-34 50-80 (307)
81 3q9l_A Septum site-determining 89.9 0.31 1.1E-05 39.6 4.5 30 2-33 12-41 (260)
82 2c95_A Adenylate kinase 1; tra 89.8 0.15 5.2E-06 39.5 2.4 18 1-18 17-34 (196)
83 3ug7_A Arsenical pump-driving 89.8 0.28 9.4E-06 42.4 4.2 30 2-33 35-64 (349)
84 3uie_A Adenylyl-sulfate kinase 89.8 0.15 5.2E-06 40.0 2.4 18 1-18 33-50 (200)
85 2xj4_A MIPZ; replication, cell 89.8 0.31 1E-05 40.7 4.3 38 2-41 14-52 (286)
86 3h4m_A Proteasome-activating n 89.7 0.14 4.9E-06 42.5 2.2 17 2-18 60-76 (285)
87 1aky_A Adenylate kinase; ATP:A 89.6 0.16 5.5E-06 40.5 2.4 18 1-18 12-29 (220)
88 2bwj_A Adenylate kinase 5; pho 89.6 0.16 5.6E-06 39.5 2.4 18 1-18 20-37 (199)
89 2qz4_A Paraplegin; AAA+, SPG7, 89.5 0.15 5.2E-06 41.6 2.2 17 2-18 48-64 (262)
90 4eun_A Thermoresistant glucoki 89.4 0.17 5.9E-06 39.7 2.4 17 1-17 37-53 (200)
91 2r62_A Cell division protease 89.4 0.18 6.2E-06 41.4 2.6 18 2-19 53-70 (268)
92 2ph1_A Nucleotide-binding prot 89.4 0.16 5.6E-06 41.7 2.3 31 2-34 28-58 (262)
93 1g3q_A MIND ATPase, cell divis 89.3 0.37 1.3E-05 38.6 4.4 30 2-33 12-41 (237)
94 1zd8_A GTP:AMP phosphotransfer 89.3 0.17 6E-06 40.5 2.4 17 1-17 15-31 (227)
95 2pbr_A DTMP kinase, thymidylat 89.3 0.18 6E-06 39.1 2.3 18 1-18 8-25 (195)
96 1zak_A Adenylate kinase; ATP:A 89.3 0.17 6E-06 40.3 2.4 18 1-18 13-30 (222)
97 2z0h_A DTMP kinase, thymidylat 89.2 0.56 1.9E-05 36.2 5.2 17 2-18 9-25 (197)
98 1lv7_A FTSH; alpha/beta domain 89.1 0.17 5.9E-06 41.3 2.2 17 2-18 54-70 (257)
99 3fb4_A Adenylate kinase; psych 89.0 0.19 6.4E-06 39.9 2.4 18 1-18 8-25 (216)
100 2wwf_A Thymidilate kinase, put 89.0 0.19 6.4E-06 39.6 2.3 24 1-25 18-41 (212)
101 1qf9_A UMP/CMP kinase, protein 88.9 0.19 6.6E-06 38.7 2.3 18 1-18 14-31 (194)
102 2bdt_A BH3686; alpha-beta prot 88.9 0.19 6.4E-06 39.0 2.2 15 1-15 10-24 (189)
103 2woo_A ATPase GET3; tail-ancho 88.9 0.39 1.3E-05 41.0 4.5 30 2-33 28-57 (329)
104 2oze_A ORF delta'; para, walke 88.8 0.19 6.6E-06 42.0 2.4 31 2-34 46-76 (298)
105 1d2n_A N-ethylmaleimide-sensit 88.8 0.19 6.3E-06 41.6 2.2 17 2-18 73-89 (272)
106 3be4_A Adenylate kinase; malar 88.8 0.2 7E-06 39.9 2.4 18 1-18 13-30 (217)
107 3kl4_A SRP54, signal recogniti 88.7 1.8 6E-05 38.5 8.6 74 2-77 106-186 (433)
108 1ukz_A Uridylate kinase; trans 88.7 0.2 6.9E-06 39.2 2.3 17 1-17 23-39 (203)
109 1byi_A Dethiobiotin synthase; 88.6 0.21 7.1E-06 39.8 2.4 19 2-20 11-29 (224)
110 3dl0_A Adenylate kinase; phosp 88.6 0.21 7E-06 39.6 2.3 17 1-17 8-24 (216)
111 1nn5_A Similar to deoxythymidy 88.6 0.21 7.1E-06 39.4 2.3 24 1-25 17-40 (215)
112 3lda_A DNA repair protein RAD5 88.6 0.98 3.4E-05 39.7 6.9 48 2-50 187-238 (400)
113 3pg5_A Uncharacterized protein 88.6 0.33 1.1E-05 42.1 3.8 37 2-40 11-47 (361)
114 2if2_A Dephospho-COA kinase; a 88.5 0.21 7.1E-06 39.2 2.3 15 1-15 9-23 (204)
115 1in4_A RUVB, holliday junction 88.5 0.19 6.3E-06 43.1 2.1 17 2-18 60-76 (334)
116 3fkq_A NTRC-like two-domain pr 88.4 0.31 1.1E-05 42.4 3.6 33 2-36 153-185 (373)
117 2woj_A ATPase GET3; tail-ancho 88.4 0.56 1.9E-05 40.5 5.1 38 2-41 27-66 (354)
118 1l8q_A Chromosomal replication 88.4 0.2 6.8E-06 42.5 2.2 18 2-19 46-63 (324)
119 1gvn_B Zeta; postsegregational 88.4 0.18 6.1E-06 42.3 1.9 17 1-17 41-57 (287)
120 3io3_A DEHA2D07832P; chaperone 88.4 0.45 1.5E-05 41.1 4.5 35 2-38 27-63 (348)
121 1e4v_A Adenylate kinase; trans 88.3 0.22 7.6E-06 39.5 2.4 17 1-17 8-24 (214)
122 4a74_A DNA repair and recombin 88.3 0.79 2.7E-05 36.3 5.7 47 2-49 34-84 (231)
123 1ixz_A ATP-dependent metallopr 88.3 0.21 7.2E-06 40.7 2.2 17 2-18 58-74 (254)
124 1sxj_B Activator 1 37 kDa subu 88.2 0.2 6.7E-06 42.2 2.1 38 2-39 51-88 (323)
125 2xxa_A Signal recognition part 88.2 2.4 8.2E-05 37.6 9.2 75 2-77 109-190 (433)
126 1ls1_A Signal recognition part 88.2 2 6.8E-05 36.0 8.3 74 2-77 107-187 (295)
127 2kjq_A DNAA-related protein; s 88.2 0.14 4.8E-06 38.4 1.0 30 2-33 45-74 (149)
128 1ak2_A Adenylate kinase isoenz 88.2 0.23 7.9E-06 40.0 2.4 18 1-18 24-41 (233)
129 1hyq_A MIND, cell division inh 88.1 0.48 1.6E-05 38.7 4.4 30 2-33 12-41 (263)
130 3gmt_A Adenylate kinase; ssgci 88.1 1.3 4.4E-05 35.8 6.7 18 1-18 16-33 (230)
131 1cr0_A DNA primase/helicase; R 88.1 0.76 2.6E-05 38.3 5.6 43 2-48 44-87 (296)
132 3b9p_A CG5977-PA, isoform A; A 88.0 0.22 7.5E-06 41.6 2.2 17 2-18 63-79 (297)
133 2v54_A DTMP kinase, thymidylat 88.0 0.23 7.8E-06 38.8 2.2 17 1-17 12-28 (204)
134 2qgz_A Helicase loader, putati 88.0 0.32 1.1E-05 41.2 3.2 28 2-31 161-189 (308)
135 3fwy_A Light-independent proto 88.0 0.2 6.9E-06 42.6 2.0 30 2-33 57-86 (314)
136 2xb4_A Adenylate kinase; ATP-b 87.9 0.25 8.4E-06 39.6 2.4 17 1-17 8-24 (223)
137 1kgd_A CASK, peripheral plasma 87.9 0.23 7.9E-06 38.3 2.1 16 2-17 14-29 (180)
138 3cf0_A Transitional endoplasmi 87.8 0.23 7.8E-06 41.8 2.2 17 2-18 58-74 (301)
139 2x8a_A Nuclear valosin-contain 87.8 0.24 8.4E-06 41.1 2.3 17 2-18 53-69 (274)
140 1m7g_A Adenylylsulfate kinase; 87.6 0.26 9E-06 39.0 2.4 18 1-18 33-50 (211)
141 4a1f_A DNAB helicase, replicat 87.6 0.94 3.2E-05 38.9 5.9 43 2-48 55-97 (338)
142 3uk6_A RUVB-like 2; hexameric 87.5 0.26 8.7E-06 42.5 2.4 18 2-19 79-96 (368)
143 1ye8_A Protein THEP1, hypothet 87.5 0.25 8.6E-06 38.2 2.1 18 2-19 9-26 (178)
144 2pez_A Bifunctional 3'-phospho 87.5 0.27 9.1E-06 37.7 2.3 18 1-18 13-30 (179)
145 1wcv_1 SOJ, segregation protei 87.5 0.32 1.1E-05 39.8 2.9 30 2-33 16-45 (257)
146 3lv8_A DTMP kinase, thymidylat 87.4 0.83 2.8E-05 37.1 5.3 43 2-45 36-78 (236)
147 2dr3_A UPF0273 protein PH0284; 87.3 0.46 1.6E-05 38.1 3.8 44 2-50 32-75 (247)
148 1xwi_A SKD1 protein; VPS4B, AA 87.3 0.25 8.7E-06 42.1 2.2 16 2-17 54-69 (322)
149 4tmk_A Protein (thymidylate ki 87.2 0.9 3.1E-05 36.2 5.3 44 2-46 12-55 (213)
150 3eie_A Vacuolar protein sortin 87.2 0.26 8.9E-06 41.9 2.2 17 2-18 60-76 (322)
151 1cke_A CK, MSSA, protein (cyti 87.1 0.3 1E-05 38.9 2.4 18 1-18 13-30 (227)
152 3co5_A Putative two-component 87.0 0.11 3.7E-06 38.6 -0.3 16 2-17 36-51 (143)
153 2j41_A Guanylate kinase; GMP, 87.0 0.28 9.6E-06 38.3 2.2 16 2-17 15-30 (207)
154 2bbw_A Adenylate kinase 4, AK4 86.9 0.3 1E-05 39.6 2.4 18 1-18 35-52 (246)
155 2b8t_A Thymidine kinase; deoxy 86.9 0.25 8.5E-06 39.8 1.8 71 2-77 21-96 (223)
156 4eaq_A DTMP kinase, thymidylat 86.8 0.65 2.2E-05 37.4 4.3 19 1-19 34-52 (229)
157 3dm5_A SRP54, signal recogniti 86.7 1.8 6.2E-05 38.5 7.5 74 2-77 109-189 (443)
158 2ffh_A Protein (FFH); SRP54, s 86.7 3 0.0001 36.9 8.9 73 2-77 107-187 (425)
159 3pfi_A Holliday junction ATP-d 86.7 0.28 9.6E-06 41.8 2.2 17 2-18 64-80 (338)
160 1ofh_A ATP-dependent HSL prote 86.6 0.29 1E-05 40.8 2.2 17 2-18 59-75 (310)
161 1jjv_A Dephospho-COA kinase; P 86.6 0.29 9.8E-06 38.4 2.1 15 1-15 10-24 (206)
162 1iy2_A ATP-dependent metallopr 86.5 0.3 1E-05 40.4 2.2 17 2-18 82-98 (278)
163 1uf9_A TT1252 protein; P-loop, 86.4 0.32 1.1E-05 37.8 2.3 16 1-16 16-31 (203)
164 3tlx_A Adenylate kinase 2; str 86.4 0.34 1.2E-05 39.4 2.4 17 1-17 37-53 (243)
165 2q6t_A DNAB replication FORK h 86.3 1.1 3.6E-05 40.0 5.8 43 2-47 209-251 (444)
166 4edh_A DTMP kinase, thymidylat 86.3 1.1 3.8E-05 35.6 5.4 43 2-46 15-57 (213)
167 3tr0_A Guanylate kinase, GMP k 86.3 0.31 1.1E-05 38.0 2.1 16 2-17 16-31 (205)
168 3c8u_A Fructokinase; YP_612366 86.2 0.26 8.9E-06 38.9 1.6 17 2-18 31-47 (208)
169 1xjc_A MOBB protein homolog; s 86.1 0.4 1.4E-05 36.8 2.5 18 2-19 13-30 (169)
170 2z4s_A Chromosomal replication 86.1 0.31 1.1E-05 43.5 2.2 18 2-19 139-156 (440)
171 3ez2_A Plasmid partition prote 86.1 0.3 1E-05 42.8 2.1 34 2-35 118-155 (398)
172 3nwj_A ATSK2; P loop, shikimat 86.1 0.33 1.1E-05 39.8 2.2 18 1-18 56-73 (250)
173 2bjv_A PSP operon transcriptio 86.0 0.32 1.1E-05 39.9 2.1 17 2-18 38-54 (265)
174 2p5t_B PEZT; postsegregational 86.0 0.23 8E-06 40.6 1.2 18 1-18 40-57 (253)
175 2qt1_A Nicotinamide riboside k 85.9 0.33 1.1E-05 38.2 2.1 15 2-16 30-44 (207)
176 1ltq_A Polynucleotide kinase; 85.7 0.35 1.2E-05 40.4 2.3 16 1-16 10-25 (301)
177 4b4t_J 26S protease regulatory 85.7 0.29 1E-05 43.1 1.7 18 2-19 191-208 (405)
178 2hf9_A Probable hydrogenase ni 85.5 0.38 1.3E-05 38.2 2.2 17 2-18 47-63 (226)
179 1ihu_A Arsenical pump-driving 85.5 0.73 2.5E-05 42.7 4.5 29 2-32 17-45 (589)
180 2grj_A Dephospho-COA kinase; T 85.5 0.4 1.4E-05 37.6 2.3 17 1-17 20-36 (192)
181 2qp9_X Vacuolar protein sortin 85.4 0.36 1.2E-05 41.7 2.2 17 2-18 93-109 (355)
182 4b4t_K 26S protease regulatory 85.3 0.3 1E-05 43.4 1.7 18 2-19 215-232 (428)
183 2fna_A Conserved hypothetical 85.3 5 0.00017 33.7 9.4 28 1-33 38-65 (357)
184 2w0m_A SSO2452; RECA, SSPF, un 85.3 0.56 1.9E-05 37.2 3.2 44 2-50 32-75 (235)
185 3asz_A Uridine kinase; cytidin 85.3 0.38 1.3E-05 37.9 2.1 17 2-18 15-31 (211)
186 3tau_A Guanylate kinase, GMP k 85.2 0.38 1.3E-05 38.0 2.1 17 2-18 17-33 (208)
187 4hlc_A DTMP kinase, thymidylat 85.2 0.66 2.3E-05 36.7 3.5 42 2-46 11-52 (205)
188 1gtv_A TMK, thymidylate kinase 85.0 0.28 9.7E-06 38.6 1.3 17 2-18 9-25 (214)
189 3d8b_A Fidgetin-like protein 1 85.0 0.39 1.3E-05 41.5 2.2 17 2-18 126-142 (357)
190 2zts_A Putative uncharacterize 84.8 0.46 1.6E-05 38.2 2.5 40 2-44 39-78 (251)
191 3bgw_A DNAB-like replicative h 84.8 1 3.5E-05 40.2 5.0 42 2-47 206-247 (444)
192 4fcw_A Chaperone protein CLPB; 84.7 0.39 1.3E-05 40.2 2.1 29 2-32 56-84 (311)
193 4b4t_M 26S protease regulatory 84.6 0.35 1.2E-05 43.1 1.8 18 2-19 224-241 (434)
194 1iqp_A RFCS; clamp loader, ext 84.6 0.42 1.4E-05 40.2 2.2 17 2-18 55-71 (327)
195 1vht_A Dephospho-COA kinase; s 84.5 0.45 1.5E-05 37.7 2.3 15 1-15 12-26 (218)
196 3ake_A Cytidylate kinase; CMP 84.5 0.47 1.6E-05 37.1 2.3 18 1-18 10-27 (208)
197 4b4t_L 26S protease subunit RP 84.5 0.35 1.2E-05 43.1 1.8 18 2-19 224-241 (437)
198 1uj2_A Uridine-cytidine kinase 84.4 0.46 1.6E-05 38.7 2.3 18 1-18 30-47 (252)
199 3a00_A Guanylate kinase, GMP k 84.4 0.44 1.5E-05 36.8 2.1 17 2-18 10-26 (186)
200 3ld9_A DTMP kinase, thymidylat 84.3 0.74 2.5E-05 37.0 3.4 45 1-46 29-74 (223)
201 1rz3_A Hypothetical protein rb 84.3 0.45 1.5E-05 37.3 2.1 17 2-18 31-47 (201)
202 1sxj_D Activator 1 41 kDa subu 84.2 0.44 1.5E-05 40.6 2.2 16 2-17 67-82 (353)
203 3pvs_A Replication-associated 84.2 0.44 1.5E-05 42.7 2.2 17 2-18 59-75 (447)
204 1um8_A ATP-dependent CLP prote 84.1 0.46 1.6E-05 41.2 2.3 17 2-18 81-97 (376)
205 3hws_A ATP-dependent CLP prote 83.9 0.46 1.6E-05 41.0 2.2 17 2-18 60-76 (363)
206 1htw_A HI0065; nucleotide-bind 83.9 0.47 1.6E-05 35.9 2.0 16 2-17 42-57 (158)
207 2j37_W Signal recognition part 83.9 6.1 0.00021 35.8 9.7 48 2-51 110-158 (504)
208 2ce2_X GTPase HRAS; signaling 83.9 0.46 1.6E-05 35.1 1.9 16 2-17 12-27 (166)
209 4e22_A Cytidylate kinase; P-lo 83.9 0.51 1.8E-05 38.5 2.4 18 1-18 35-52 (252)
210 4b4t_H 26S protease regulatory 83.8 0.39 1.3E-05 43.0 1.8 18 2-19 252-269 (467)
211 3igf_A ALL4481 protein; two-do 83.7 0.52 1.8E-05 41.1 2.5 34 2-38 11-44 (374)
212 2ocp_A DGK, deoxyguanosine kin 83.7 0.53 1.8E-05 38.0 2.4 17 2-18 11-27 (241)
213 1ex7_A Guanylate kinase; subst 83.7 0.52 1.8E-05 36.8 2.2 16 2-17 10-25 (186)
214 2r6a_A DNAB helicase, replicat 83.5 1 3.5E-05 40.2 4.4 41 2-45 212-252 (454)
215 2wsm_A Hydrogenase expression/ 83.5 0.52 1.8E-05 37.2 2.2 17 2-18 39-55 (221)
216 4gp7_A Metallophosphoesterase; 83.3 0.41 1.4E-05 36.5 1.5 13 2-14 18-30 (171)
217 1q57_A DNA primase/helicase; d 83.1 1.4 4.7E-05 39.9 5.1 43 2-47 251-293 (503)
218 1sxj_A Activator 1 95 kDa subu 83.0 0.51 1.8E-05 43.0 2.2 16 2-17 86-101 (516)
219 2ehv_A Hypothetical protein PH 83.0 0.51 1.7E-05 38.0 2.0 15 2-16 39-53 (251)
220 1lvg_A Guanylate kinase, GMP k 82.9 0.55 1.9E-05 36.8 2.1 16 2-17 13-28 (198)
221 3u61_B DNA polymerase accessor 82.9 0.55 1.9E-05 39.7 2.2 17 2-18 57-73 (324)
222 2ga8_A Hypothetical 39.9 kDa p 82.7 0.6 2.1E-05 40.4 2.4 18 1-18 32-49 (359)
223 1odf_A YGR205W, hypothetical 3 82.6 0.55 1.9E-05 39.4 2.1 44 2-45 40-84 (290)
224 3r20_A Cytidylate kinase; stru 82.6 0.63 2.2E-05 37.7 2.4 18 1-18 17-34 (233)
225 1pzn_A RAD51, DNA repair and r 82.5 1.4 4.8E-05 37.9 4.7 47 2-49 140-190 (349)
226 2r44_A Uncharacterized protein 82.5 0.41 1.4E-05 40.7 1.3 17 2-18 55-71 (331)
227 2c9o_A RUVB-like 1; hexameric 82.5 0.58 2E-05 41.9 2.4 17 2-18 72-88 (456)
228 2jeo_A Uridine-cytidine kinase 82.5 0.57 1.9E-05 38.0 2.1 16 2-17 34-49 (245)
229 1znw_A Guanylate kinase, GMP k 82.5 0.58 2E-05 36.8 2.1 16 2-17 29-44 (207)
230 2dyk_A GTP-binding protein; GT 82.5 0.55 1.9E-05 34.6 1.9 16 2-17 10-25 (161)
231 4b4t_I 26S protease regulatory 82.4 0.48 1.6E-05 42.0 1.7 18 2-19 225-242 (437)
232 1jr3_A DNA polymerase III subu 82.4 0.58 2E-05 40.2 2.2 18 2-19 47-64 (373)
233 1vma_A Cell division protein F 82.3 1.5 5.2E-05 37.0 4.8 47 2-51 113-161 (306)
234 3cmu_A Protein RECA, recombina 82.3 3 0.0001 44.2 7.7 69 2-77 1436-1512(2050)
235 3crm_A TRNA delta(2)-isopenten 82.2 0.64 2.2E-05 39.6 2.4 17 1-17 13-29 (323)
236 2zan_A Vacuolar protein sortin 82.2 0.59 2E-05 41.7 2.2 16 2-17 176-191 (444)
237 1tue_A Replication protein E1; 82.2 0.49 1.7E-05 37.6 1.5 17 2-18 67-83 (212)
238 3tmk_A Thymidylate kinase; pho 82.0 1.9 6.5E-05 34.4 5.0 19 1-19 13-31 (216)
239 3aez_A Pantothenate kinase; tr 82.0 0.59 2E-05 39.6 2.1 32 2-33 99-130 (312)
240 3ney_A 55 kDa erythrocyte memb 82.0 0.66 2.3E-05 36.5 2.2 17 2-18 28-44 (197)
241 3zvl_A Bifunctional polynucleo 82.0 0.55 1.9E-05 41.6 2.0 17 1-17 266-282 (416)
242 1oix_A RAS-related protein RAB 82.0 0.63 2.1E-05 36.0 2.1 16 2-17 38-53 (191)
243 2i3b_A HCR-ntpase, human cance 81.9 0.67 2.3E-05 36.2 2.2 17 2-18 10-26 (189)
244 3vfd_A Spastin; ATPase, microt 81.9 0.62 2.1E-05 40.7 2.2 17 2-18 157-173 (389)
245 3con_A GTPase NRAS; structural 81.9 0.59 2E-05 35.8 1.9 16 2-17 30-45 (190)
246 2f6r_A COA synthase, bifunctio 81.8 0.62 2.1E-05 38.8 2.1 15 1-15 83-97 (281)
247 1sxj_C Activator 1 40 kDa subu 81.8 0.63 2.1E-05 39.7 2.2 17 2-18 55-71 (340)
248 3sr0_A Adenylate kinase; phosp 81.7 0.68 2.3E-05 36.7 2.3 17 2-18 9-25 (206)
249 1z6g_A Guanylate kinase; struc 81.6 0.65 2.2E-05 37.0 2.1 16 2-17 32-47 (218)
250 1np6_A Molybdopterin-guanine d 81.6 0.71 2.4E-05 35.5 2.2 17 2-18 15-31 (174)
251 3cmu_A Protein RECA, recombina 81.5 3.3 0.00011 43.8 7.7 70 2-78 392-469 (2050)
252 3cmw_A Protein RECA, recombina 81.3 2.8 9.4E-05 43.7 7.0 69 2-77 741-817 (1706)
253 1g8f_A Sulfate adenylyltransfe 81.3 0.7 2.4E-05 42.1 2.4 19 1-19 403-421 (511)
254 3ez9_A Para; DNA binding, wing 81.3 0.35 1.2E-05 42.6 0.4 17 2-18 121-137 (403)
255 2ce7_A Cell division protein F 81.2 0.64 2.2E-05 41.9 2.1 17 2-18 58-74 (476)
256 2f9l_A RAB11B, member RAS onco 81.1 0.7 2.4E-05 35.8 2.1 15 2-16 14-28 (199)
257 1nlf_A Regulatory protein REPA 81.1 0.65 2.2E-05 38.4 2.0 33 2-34 39-79 (279)
258 3nbx_X ATPase RAVA; AAA+ ATPas 81.0 0.47 1.6E-05 43.1 1.2 17 2-18 50-66 (500)
259 3cmw_A Protein RECA, recombina 81.0 2.9 9.8E-05 43.6 7.0 70 2-78 392-469 (1706)
260 2zej_A Dardarin, leucine-rich 80.9 0.52 1.8E-05 36.1 1.3 15 2-16 11-25 (184)
261 1p6x_A Thymidine kinase; P-loo 80.9 0.67 2.3E-05 39.7 2.0 18 2-19 16-33 (334)
262 1g8p_A Magnesium-chelatase 38 80.7 0.41 1.4E-05 40.8 0.7 17 2-18 54-70 (350)
263 1z2a_A RAS-related protein RAB 80.7 0.76 2.6E-05 34.1 2.1 15 2-16 14-28 (168)
264 3pxg_A Negative regulator of g 80.6 0.59 2E-05 42.0 1.7 16 2-17 210-225 (468)
265 2wji_A Ferrous iron transport 80.6 0.67 2.3E-05 34.7 1.8 15 2-16 12-26 (165)
266 2axn_A 6-phosphofructo-2-kinas 80.6 1.1 3.7E-05 40.9 3.4 19 1-19 43-61 (520)
267 1sxj_E Activator 1 40 kDa subu 80.6 0.58 2E-05 40.0 1.6 15 2-16 45-59 (354)
268 2chq_A Replication factor C sm 80.3 0.77 2.6E-05 38.4 2.2 16 2-17 47-62 (319)
269 1s96_A Guanylate kinase, GMP k 80.0 0.8 2.7E-05 36.6 2.1 17 2-18 25-41 (219)
270 1sky_E F1-ATPase, F1-ATP synth 80.0 1.2 4.1E-05 40.0 3.4 44 2-46 160-204 (473)
271 1ojl_A Transcriptional regulat 79.9 0.78 2.7E-05 38.7 2.1 16 2-17 34-49 (304)
272 3v9p_A DTMP kinase, thymidylat 79.8 1.5 5.1E-05 35.3 3.7 46 1-47 33-81 (227)
273 3e70_C DPA, signal recognition 79.8 3.6 0.00012 35.1 6.2 48 2-51 138-186 (328)
274 2wjg_A FEOB, ferrous iron tran 79.7 0.78 2.7E-05 34.9 2.0 15 2-16 16-30 (188)
275 1g41_A Heat shock protein HSLU 79.7 0.84 2.9E-05 40.7 2.3 19 1-19 58-76 (444)
276 1u8z_A RAS-related protein RAL 79.6 0.8 2.7E-05 33.9 1.9 16 2-17 13-28 (168)
277 1rj9_A FTSY, signal recognitio 79.4 0.83 2.8E-05 38.6 2.1 18 2-19 111-128 (304)
278 3umf_A Adenylate kinase; rossm 79.3 0.91 3.1E-05 36.3 2.2 17 2-18 38-54 (217)
279 2dhr_A FTSH; AAA+ protein, hex 79.2 0.85 2.9E-05 41.4 2.2 17 2-18 73-89 (499)
280 1bif_A 6-phosphofructo-2-kinas 79.1 0.89 3.1E-05 40.8 2.4 19 1-19 47-65 (469)
281 1zu4_A FTSY; GTPase, signal re 79.1 1.4 4.9E-05 37.4 3.6 28 2-31 114-141 (320)
282 3d3q_A TRNA delta(2)-isopenten 79.0 0.96 3.3E-05 38.8 2.4 17 2-18 16-32 (340)
283 1r8s_A ADP-ribosylation factor 79.0 0.97 3.3E-05 33.4 2.2 16 2-17 9-24 (164)
284 1p5z_B DCK, deoxycytidine kina 78.8 0.46 1.6E-05 39.0 0.3 16 2-17 33-48 (263)
285 2f1r_A Molybdopterin-guanine d 78.7 0.73 2.5E-05 35.3 1.5 28 2-29 11-38 (171)
286 3m6a_A ATP-dependent protease 78.7 0.85 2.9E-05 41.9 2.1 17 2-18 117-133 (543)
287 2nzj_A GTP-binding protein REM 78.6 0.84 2.9E-05 34.1 1.8 15 2-16 13-27 (175)
288 2orw_A Thymidine kinase; TMTK, 78.6 1.1 3.6E-05 34.8 2.4 18 2-19 12-29 (184)
289 2erx_A GTP-binding protein DI- 78.5 0.91 3.1E-05 33.7 2.0 15 2-16 12-26 (172)
290 3a8t_A Adenylate isopentenyltr 78.3 0.9 3.1E-05 38.9 2.0 16 2-17 49-64 (339)
291 1m7b_A RND3/RHOE small GTP-bin 78.1 0.93 3.2E-05 34.5 1.9 16 2-17 16-31 (184)
292 2ged_A SR-beta, signal recogni 78.1 0.93 3.2E-05 34.7 1.9 16 2-17 57-72 (193)
293 3bfv_A CAPA1, CAPB2, membrane 78.1 0.92 3.2E-05 37.5 2.0 29 2-32 92-120 (271)
294 3tqc_A Pantothenate kinase; bi 78.0 0.96 3.3E-05 38.5 2.1 17 2-18 101-117 (321)
295 1z08_A RAS-related protein RAB 77.9 0.95 3.3E-05 33.6 1.9 16 2-17 15-30 (170)
296 1c1y_A RAS-related protein RAP 77.9 1 3.6E-05 33.3 2.1 15 2-16 12-26 (167)
297 1ek0_A Protein (GTP-binding pr 77.8 0.97 3.3E-05 33.5 1.9 16 2-17 12-27 (170)
298 2qmh_A HPR kinase/phosphorylas 77.8 0.79 2.7E-05 36.2 1.4 16 2-17 43-58 (205)
299 1q3t_A Cytidylate kinase; nucl 77.8 1.1 3.7E-05 36.0 2.3 18 1-18 24-41 (236)
300 1fx0_B ATP synthase beta chain 77.7 3.8 0.00013 37.0 5.9 45 2-47 174-219 (498)
301 3b9q_A Chloroplast SRP recepto 77.7 1 3.5E-05 38.0 2.2 18 2-19 109-126 (302)
302 2fn4_A P23, RAS-related protei 77.6 0.99 3.4E-05 33.9 1.9 15 2-16 18-32 (181)
303 1z0j_A RAB-22, RAS-related pro 77.6 1 3.4E-05 33.5 1.9 16 2-17 15-30 (170)
304 2hxs_A RAB-26, RAS-related pro 77.6 1.1 3.8E-05 33.6 2.2 15 2-16 15-29 (178)
305 1kao_A RAP2A; GTP-binding prot 77.5 1.1 3.7E-05 33.0 2.1 16 2-17 12-27 (167)
306 3t1o_A Gliding protein MGLA; G 77.4 1.1 3.6E-05 34.3 2.1 15 2-16 23-37 (198)
307 1e2k_A Thymidine kinase; trans 77.4 0.72 2.4E-05 39.5 1.1 17 2-18 13-29 (331)
308 3tqf_A HPR(Ser) kinase; transf 77.4 1.1 3.8E-05 34.6 2.1 15 2-16 25-39 (181)
309 2ck3_D ATP synthase subunit be 77.3 3.7 0.00013 36.9 5.8 45 2-47 162-207 (482)
310 1sq5_A Pantothenate kinase; P- 77.3 1 3.5E-05 38.0 2.1 17 2-18 89-105 (308)
311 3cio_A ETK, tyrosine-protein k 77.3 2.4 8.2E-05 35.5 4.4 35 2-38 114-149 (299)
312 2h92_A Cytidylate kinase; ross 77.2 1.2 4.1E-05 35.1 2.4 18 1-18 11-28 (219)
313 1ky3_A GTP-binding protein YPT 77.2 1 3.6E-05 33.8 1.9 16 2-17 17-32 (182)
314 1nrj_B SR-beta, signal recogni 77.0 1.1 3.6E-05 35.2 2.0 16 2-17 21-36 (218)
315 3c5c_A RAS-like protein 12; GD 76.9 1.1 3.6E-05 34.4 1.9 16 2-17 30-45 (187)
316 3ihw_A Centg3; RAS, centaurin, 76.9 1.1 3.9E-05 34.2 2.1 15 2-16 29-43 (184)
317 1m2o_B GTP-binding protein SAR 76.8 1.1 3.9E-05 34.4 2.1 15 2-16 32-46 (190)
318 1x6v_B Bifunctional 3'-phospho 76.7 1.1 3.9E-05 41.7 2.3 17 1-17 60-76 (630)
319 1r2q_A RAS-related protein RAB 76.7 1.2 4E-05 33.0 2.1 15 2-16 15-29 (170)
320 1of1_A Thymidine kinase; trans 76.6 0.93 3.2E-05 39.5 1.7 17 2-18 58-74 (376)
321 2gj8_A MNME, tRNA modification 76.6 1.1 3.8E-05 33.8 2.0 15 2-16 13-27 (172)
322 3q72_A GTP-binding protein RAD 76.6 1.1 3.6E-05 33.3 1.8 14 2-15 11-24 (166)
323 1z0f_A RAB14, member RAS oncog 76.5 1.2 4.1E-05 33.4 2.1 16 2-17 24-39 (179)
324 3la6_A Tyrosine-protein kinase 76.5 3.6 0.00012 34.2 5.2 37 2-40 102-139 (286)
325 3pqc_A Probable GTP-binding pr 76.4 1 3.6E-05 34.3 1.8 16 2-17 32-47 (195)
326 1wms_A RAB-9, RAB9, RAS-relate 76.4 1.1 3.8E-05 33.5 1.9 15 2-16 16-30 (177)
327 2cxx_A Probable GTP-binding pr 76.4 1.1 3.6E-05 34.1 1.8 15 2-16 10-24 (190)
328 2onk_A Molybdate/tungstate ABC 76.4 1.1 3.8E-05 36.3 2.0 25 2-29 33-57 (240)
329 3kkq_A RAS-related protein M-R 76.4 1.1 3.8E-05 33.8 1.9 15 2-16 27-41 (183)
330 1svi_A GTP-binding protein YSX 76.3 1 3.5E-05 34.5 1.7 15 2-16 32-46 (195)
331 2lkc_A Translation initiation 76.3 1.1 3.8E-05 33.6 1.9 15 2-16 17-31 (178)
332 2bme_A RAB4A, RAS-related prot 76.2 1.1 3.9E-05 33.9 1.9 16 2-17 19-34 (186)
333 3hu3_A Transitional endoplasmi 76.2 1.2 4E-05 40.4 2.2 16 2-17 247-262 (489)
334 3fdi_A Uncharacterized protein 76.2 1.3 4.5E-05 34.8 2.3 19 1-19 14-32 (201)
335 1g16_A RAS-related protein SEC 76.2 1.1 3.9E-05 33.1 1.9 15 2-16 12-26 (170)
336 3q85_A GTP-binding protein REM 76.2 1.1 3.7E-05 33.3 1.8 14 2-15 11-24 (169)
337 4dsu_A GTPase KRAS, isoform 2B 76.1 1.1 3.9E-05 33.9 1.9 16 2-17 13-28 (189)
338 2a9k_A RAS-related protein RAL 76.1 1.2 4E-05 33.7 1.9 16 2-17 27-42 (187)
339 1m8p_A Sulfate adenylyltransfe 76.0 1.2 4.1E-05 41.1 2.3 18 1-18 404-421 (573)
340 1upt_A ARL1, ADP-ribosylation 75.9 1.3 4.3E-05 33.0 2.1 15 2-16 16-30 (171)
341 2pcj_A ABC transporter, lipopr 75.9 0.96 3.3E-05 36.2 1.5 25 2-29 39-63 (224)
342 2iwr_A Centaurin gamma 1; ANK 75.9 0.96 3.3E-05 34.1 1.4 15 2-16 16-30 (178)
343 3b85_A Phosphate starvation-in 75.9 0.86 2.9E-05 36.1 1.2 15 2-16 31-45 (208)
344 2cjw_A GTP-binding protein GEM 75.8 1.3 4.6E-05 34.1 2.2 15 2-16 15-29 (192)
345 3bc1_A RAS-related protein RAB 75.7 1.3 4.4E-05 33.7 2.1 16 2-17 20-35 (195)
346 3foz_A TRNA delta(2)-isopenten 75.6 1.3 4.5E-05 37.5 2.2 16 2-17 19-34 (316)
347 2vp4_A Deoxynucleoside kinase; 75.6 0.69 2.4E-05 37.1 0.5 15 2-16 29-43 (230)
348 2y8e_A RAB-protein 6, GH09086P 75.4 1.2 4.2E-05 33.3 1.9 15 2-16 23-37 (179)
349 3lnc_A Guanylate kinase, GMP k 75.4 0.75 2.6E-05 36.8 0.7 16 2-17 36-52 (231)
350 2d2e_A SUFC protein; ABC-ATPas 75.4 1.2 4.2E-05 36.3 2.0 15 2-16 38-52 (250)
351 3cf2_A TER ATPase, transitiona 75.4 0.95 3.2E-05 43.6 1.5 17 2-18 247-263 (806)
352 2v3c_C SRP54, signal recogniti 75.3 0.93 3.2E-05 40.3 1.3 48 2-51 108-156 (432)
353 1mh1_A RAC1; GTP-binding, GTPa 75.3 1.2 4.3E-05 33.5 1.9 15 2-16 14-28 (186)
354 2atv_A RERG, RAS-like estrogen 75.2 1.2 4.2E-05 34.2 1.9 15 2-16 37-51 (196)
355 2eyu_A Twitching motility prot 75.1 1.7 6E-05 35.6 2.9 17 2-18 34-50 (261)
356 2efe_B Small GTP-binding prote 74.9 1.3 4.4E-05 33.4 1.9 15 2-16 21-35 (181)
357 3dz8_A RAS-related protein RAB 74.9 1.4 4.9E-05 33.6 2.2 16 2-17 32-47 (191)
358 3bwd_D RAC-like GTP-binding pr 74.9 1.3 4.4E-05 33.3 1.9 15 2-16 17-31 (182)
359 3t5g_A GTP-binding protein RHE 74.8 1.3 4.5E-05 33.4 1.9 16 2-17 15-30 (181)
360 3exa_A TRNA delta(2)-isopenten 74.7 1.3 4.6E-05 37.5 2.1 16 2-17 12-27 (322)
361 4dkx_A RAS-related protein RAB 74.6 1.3 4.5E-05 35.2 1.9 15 2-16 22-36 (216)
362 2fh5_B SR-beta, signal recogni 74.6 1.3 4.5E-05 34.6 1.9 16 2-17 16-31 (214)
363 2zu0_C Probable ATP-dependent 74.5 1.3 4.5E-05 36.5 2.0 27 2-29 55-81 (267)
364 2g6b_A RAS-related protein RAB 74.4 1.5 5E-05 33.0 2.1 16 2-17 19-34 (180)
365 3llu_A RAS-related GTP-binding 74.4 1.3 4.4E-05 34.2 1.8 15 2-16 29-43 (196)
366 2oil_A CATX-8, RAS-related pro 74.3 1.5 5E-05 33.6 2.1 16 2-17 34-49 (193)
367 2qnr_A Septin-2, protein NEDD5 74.3 1.3 4.6E-05 37.2 2.0 15 2-16 27-41 (301)
368 3tif_A Uncharacterized ABC tra 74.2 1.3 4.4E-05 35.8 1.8 25 2-29 40-64 (235)
369 2cbz_A Multidrug resistance-as 74.1 1.1 3.9E-05 36.2 1.5 16 2-17 40-55 (237)
370 2ew1_A RAS-related protein RAB 74.1 1.5 5.1E-05 34.2 2.1 15 2-16 35-49 (201)
371 3oes_A GTPase rhebl1; small GT 74.1 1.5 5.1E-05 33.9 2.1 16 2-17 33-48 (201)
372 1f6b_A SAR1; gtpases, N-termin 74.1 1.3 4.5E-05 34.3 1.8 14 2-15 34-47 (198)
373 1gwn_A RHO-related GTP-binding 74.0 1.4 4.7E-05 34.5 1.9 16 2-17 37-52 (205)
374 3p32_A Probable GTPase RV1496/ 74.0 1.5 5E-05 37.8 2.2 17 2-18 88-104 (355)
375 2og2_A Putative signal recogni 74.0 1.5 5E-05 38.0 2.2 18 2-19 166-183 (359)
376 2bov_A RAla, RAS-related prote 73.9 1.4 4.8E-05 34.0 1.9 16 2-17 23-38 (206)
377 1vg8_A RAS-related protein RAB 73.8 1.4 4.8E-05 34.0 1.9 16 2-17 17-32 (207)
378 3kta_A Chromosome segregation 73.8 1.4 4.8E-05 33.5 1.9 15 2-16 35-49 (182)
379 3cr8_A Sulfate adenylyltranfer 73.8 1.1 3.8E-05 41.2 1.5 19 1-19 377-395 (552)
380 1sgw_A Putative ABC transporte 73.7 1.2 4.1E-05 35.5 1.5 25 2-29 44-68 (214)
381 1fzq_A ADP-ribosylation factor 73.5 1.4 4.8E-05 33.5 1.8 15 2-16 25-39 (181)
382 1ji0_A ABC transporter; ATP bi 73.5 1.2 4.1E-05 36.1 1.5 25 2-29 41-65 (240)
383 1b0u_A Histidine permease; ABC 73.4 1.2 4.1E-05 36.6 1.5 25 2-29 41-65 (262)
384 3reg_A RHO-like small GTPase; 73.3 1.5 5.1E-05 33.6 1.9 16 2-17 32-47 (194)
385 1lw7_A Transcriptional regulat 73.3 1.4 4.7E-05 38.1 1.9 17 2-18 179-195 (365)
386 3sop_A Neuronal-specific septi 73.2 1.5 5.3E-05 36.2 2.1 17 2-18 11-27 (270)
387 1ypw_A Transitional endoplasmi 73.2 1.7 5.8E-05 41.9 2.6 18 2-19 520-537 (806)
388 3clv_A RAB5 protein, putative; 73.2 1.5 5.1E-05 33.5 1.9 16 2-17 16-31 (208)
389 2gf9_A RAS-related protein RAB 73.1 1.5 5.2E-05 33.4 1.9 16 2-17 31-46 (189)
390 1a7j_A Phosphoribulokinase; tr 73.1 0.71 2.4E-05 38.7 -0.0 16 2-17 14-29 (290)
391 2h17_A ADP-ribosylation factor 73.0 1.5 5.2E-05 33.2 1.9 15 2-16 30-44 (181)
392 1svm_A Large T antigen; AAA+ f 73.0 1.5 5.2E-05 38.2 2.1 16 2-17 178-193 (377)
393 2fg5_A RAB-22B, RAS-related pr 73.0 1.5 5.2E-05 33.6 1.9 16 2-17 32-47 (192)
394 2a5j_A RAS-related protein RAB 72.9 1.6 5.6E-05 33.3 2.1 15 2-16 30-44 (191)
395 4g1u_C Hemin import ATP-bindin 72.9 1.3 4.3E-05 36.6 1.5 25 2-29 46-70 (266)
396 1zd9_A ADP-ribosylation factor 72.7 1.7 5.7E-05 33.2 2.1 16 2-17 31-46 (188)
397 1g6h_A High-affinity branched- 72.7 1.3 4.4E-05 36.3 1.5 25 2-29 42-66 (257)
398 3cbq_A GTP-binding protein REM 72.7 1.2 4.2E-05 34.4 1.3 13 2-14 32-44 (195)
399 1mv5_A LMRA, multidrug resista 72.7 1.3 4.4E-05 36.0 1.5 25 2-29 37-61 (243)
400 3k1j_A LON protease, ATP-depen 72.6 1.5 5.2E-05 40.7 2.1 17 2-18 69-85 (604)
401 2olj_A Amino acid ABC transpor 72.6 1.3 4.4E-05 36.5 1.5 25 2-29 59-83 (263)
402 1zbd_A Rabphilin-3A; G protein 72.6 1.6 5.4E-05 33.7 2.0 16 2-17 17-32 (203)
403 1x3s_A RAS-related protein RAB 72.5 1.6 5.4E-05 33.3 1.9 16 2-17 24-39 (195)
404 3tw8_B RAS-related protein RAB 72.5 1.5 5.3E-05 32.8 1.8 15 2-16 18-32 (181)
405 2gf0_A GTP-binding protein DI- 72.4 1.7 5.9E-05 33.2 2.1 15 2-16 17-31 (199)
406 3tkl_A RAS-related protein RAB 72.3 1.6 5.5E-05 33.3 1.9 16 2-17 25-40 (196)
407 2p5s_A RAS and EF-hand domain 72.3 1.6 5.4E-05 33.7 1.9 15 2-16 37-51 (199)
408 2ff7_A Alpha-hemolysin translo 72.2 1.3 4.6E-05 36.0 1.5 25 2-29 44-68 (247)
409 3pxi_A Negative regulator of g 72.2 1.3 4.6E-05 42.2 1.7 16 2-17 210-225 (758)
410 2pze_A Cystic fibrosis transme 72.1 1.4 4.6E-05 35.5 1.5 17 2-18 43-59 (229)
411 3gfo_A Cobalt import ATP-bindi 72.1 1.3 4.6E-05 36.7 1.5 25 2-29 43-67 (275)
412 1zj6_A ADP-ribosylation factor 72.0 1.7 5.7E-05 33.1 1.9 15 2-16 25-39 (187)
413 2qi9_C Vitamin B12 import ATP- 71.9 1.4 4.7E-05 36.0 1.5 24 2-29 35-58 (249)
414 1vpl_A ABC transporter, ATP-bi 71.9 1.4 4.7E-05 36.2 1.5 25 2-29 50-74 (256)
415 2yz2_A Putative ABC transporte 71.9 1.4 4.7E-05 36.4 1.5 25 2-29 42-66 (266)
416 2o52_A RAS-related protein RAB 71.8 1.6 5.4E-05 33.8 1.8 15 2-16 34-48 (200)
417 2yhs_A FTSY, cell division pro 71.8 1.7 5.9E-05 39.3 2.2 32 2-36 302-333 (503)
418 1z06_A RAS-related protein RAB 71.7 1.8 6.3E-05 32.9 2.1 15 2-16 29-43 (189)
419 2bcg_Y Protein YP2, GTP-bindin 71.7 1.8 6.2E-05 33.5 2.1 16 2-17 17-32 (206)
420 2q3h_A RAS homolog gene family 71.7 1.6 5.5E-05 33.6 1.8 15 2-16 29-43 (201)
421 2g3y_A GTP-binding protein GEM 71.6 1.7 6E-05 34.3 2.0 14 2-15 46-59 (211)
422 3upu_A ATP-dependent DNA helic 71.6 2.9 9.9E-05 37.3 3.7 19 2-20 54-72 (459)
423 2j0v_A RAC-like GTP-binding pr 71.4 1.7 5.9E-05 33.8 1.9 15 2-16 18-32 (212)
424 2ghi_A Transport protein; mult 71.4 1.4 4.9E-05 36.1 1.5 24 2-29 55-78 (260)
425 2ixe_A Antigen peptide transpo 71.4 1.4 4.9E-05 36.4 1.5 25 2-29 54-78 (271)
426 2atx_A Small GTP binding prote 71.3 1.8 6E-05 33.2 1.9 15 2-16 27-41 (194)
427 2hup_A RAS-related protein RAB 71.2 1.8 6E-05 33.6 1.9 15 2-16 38-52 (201)
428 2j1l_A RHO-related GTP-binding 71.1 1.7 5.7E-05 34.1 1.8 15 2-16 43-57 (214)
429 2fv8_A H6, RHO-related GTP-bin 71.1 1.9 6.5E-05 33.5 2.1 15 2-16 34-48 (207)
430 1ksh_A ARF-like protein 2; sma 71.0 1.5 5.1E-05 33.3 1.4 16 2-17 27-42 (186)
431 2nq2_C Hypothetical ABC transp 71.0 1.5 5E-05 35.9 1.5 16 2-17 40-55 (253)
432 1qvr_A CLPB protein; coiled co 71.0 1.8 6E-05 42.1 2.2 16 2-17 200-215 (854)
433 2ihy_A ABC transporter, ATP-bi 70.9 1.5 5.1E-05 36.5 1.5 25 2-29 56-80 (279)
434 1c9k_A COBU, adenosylcobinamid 70.7 1.9 6.6E-05 33.3 2.0 38 2-46 8-45 (180)
435 3vr4_D V-type sodium ATPase su 70.6 4.4 0.00015 36.2 4.5 43 2-46 160-207 (465)
436 2gco_A H9, RHO-related GTP-bin 70.2 1.9 6.6E-05 33.3 1.9 16 2-17 34-49 (201)
437 1a5t_A Delta prime, HOLB; zinc 70.0 2.1 7E-05 36.5 2.2 17 2-18 33-49 (334)
438 1ypw_A Transitional endoplasmi 70.0 1.9 6.3E-05 41.7 2.1 17 2-18 247-263 (806)
439 3pxi_A Negative regulator of g 69.9 2.8 9.7E-05 40.0 3.4 16 2-17 530-545 (758)
440 2obl_A ESCN; ATPase, hydrolase 69.8 2 6.9E-05 36.9 2.1 17 2-18 80-96 (347)
441 1r6b_X CLPA protein; AAA+, N-t 69.8 2 6.7E-05 41.1 2.2 16 2-17 216-231 (758)
442 2pjz_A Hypothetical protein ST 69.8 1.6 5.6E-05 35.9 1.5 24 2-29 39-62 (263)
443 3cph_A RAS-related protein SEC 69.6 2 6.7E-05 33.3 1.9 15 2-16 29-43 (213)
444 1moz_A ARL1, ADP-ribosylation 69.6 1.6 5.4E-05 32.9 1.3 14 2-15 27-40 (183)
445 2qu8_A Putative nucleolar GTP- 69.4 1.6 5.6E-05 34.6 1.4 15 2-16 38-52 (228)
446 2gks_A Bifunctional SAT/APS ki 69.4 2.2 7.4E-05 39.2 2.3 19 1-19 380-398 (546)
447 3eph_A TRNA isopentenyltransfe 69.3 2.2 7.5E-05 37.5 2.2 16 2-17 11-26 (409)
448 3ice_A Transcription terminati 69.2 4.3 0.00015 35.6 4.0 33 2-35 183-216 (422)
449 4gzl_A RAS-related C3 botulinu 69.1 2.2 7.4E-05 33.2 2.0 16 2-17 39-54 (204)
450 2b6h_A ADP-ribosylation factor 69.1 2 6.9E-05 33.0 1.8 14 2-15 38-51 (192)
451 1nij_A Hypothetical protein YJ 69.0 1.7 5.7E-05 36.8 1.4 17 1-17 12-28 (318)
452 3q3j_B RHO-related GTP-binding 68.9 2.3 7.7E-05 33.4 2.1 16 2-17 36-51 (214)
453 3k53_A Ferrous iron transport 68.8 2.1 7.1E-05 35.2 1.9 15 2-16 12-26 (271)
454 1osn_A Thymidine kinase, VZV-T 68.7 1.5 5.1E-05 37.6 1.1 19 2-20 21-40 (341)
455 3lxx_A GTPase IMAP family memb 68.6 2.2 7.4E-05 34.2 2.0 16 2-17 38-53 (239)
456 2v9p_A Replication protein E1; 68.5 2.3 7.7E-05 35.9 2.1 16 2-17 135-150 (305)
457 4bas_A ADP-ribosylation factor 68.4 2.1 7.2E-05 32.7 1.8 15 2-16 26-40 (199)
458 3l0o_A Transcription terminati 68.3 4.4 0.00015 35.6 3.9 32 2-34 184-216 (427)
459 2il1_A RAB12; G-protein, GDP, 68.2 2.2 7.4E-05 32.7 1.8 15 2-16 35-49 (192)
460 1ihu_A Arsenical pump-driving 68.2 3.8 0.00013 37.8 3.8 32 1-34 335-366 (589)
461 3hdt_A Putative kinase; struct 67.9 2.7 9.4E-05 33.6 2.4 37 1-51 22-58 (223)
462 2yv5_A YJEQ protein; hydrolase 67.6 2.3 7.9E-05 35.7 2.0 15 2-17 174-188 (302)
463 2h57_A ADP-ribosylation factor 67.6 1.4 4.9E-05 33.6 0.7 16 2-17 30-45 (190)
464 3fvq_A Fe(3+) IONS import ATP- 67.5 2.3 7.8E-05 36.8 2.0 16 2-17 39-54 (359)
465 1pui_A ENGB, probable GTP-bind 67.5 1.2 4.2E-05 34.6 0.3 15 2-16 35-49 (210)
466 1z47_A CYSA, putative ABC-tran 67.3 2.3 8E-05 36.7 2.0 16 2-17 50-65 (355)
467 2f7s_A C25KG, RAS-related prot 67.2 2.1 7.2E-05 33.4 1.6 15 2-16 34-48 (217)
468 2fu5_C RAS-related protein RAB 67.1 1.3 4.6E-05 33.4 0.4 15 2-16 17-31 (183)
469 1w5s_A Origin recognition comp 66.7 14 0.00046 31.8 6.9 77 147-230 299-387 (412)
470 3cpj_B GTP-binding protein YPT 66.6 2.7 9.1E-05 33.1 2.1 15 2-16 22-36 (223)
471 1ega_A Protein (GTP-binding pr 66.2 2.5 8.5E-05 35.4 1.9 15 2-16 17-31 (301)
472 2yyz_A Sugar ABC transporter, 65.9 2.6 8.8E-05 36.4 2.0 16 2-17 38-53 (359)
473 1g29_1 MALK, maltose transport 65.9 2.6 8.8E-05 36.6 2.0 16 2-17 38-53 (372)
474 2bbs_A Cystic fibrosis transme 65.9 2.2 7.4E-05 35.7 1.5 16 2-17 73-88 (290)
475 1u0j_A DNA replication protein 65.8 2.8 9.7E-05 34.6 2.1 15 2-16 113-127 (267)
476 2it1_A 362AA long hypothetical 65.7 2.6 8.9E-05 36.5 2.0 16 2-17 38-53 (362)
477 2p67_A LAO/AO transport system 65.7 2.7 9.3E-05 35.9 2.1 17 2-18 65-81 (341)
478 2gza_A Type IV secretion syste 65.7 2.6 8.8E-05 36.4 1.9 26 2-30 184-209 (361)
479 2dpy_A FLII, flagellum-specifi 65.4 2.7 9.4E-05 37.3 2.1 17 2-18 166-182 (438)
480 1v43_A Sugar-binding transport 65.3 2.7 9.2E-05 36.5 2.0 16 2-17 46-61 (372)
481 2rcn_A Probable GTPase ENGC; Y 65.0 2.8 9.4E-05 36.3 2.0 17 2-18 224-240 (358)
482 3mfy_A V-type ATP synthase alp 64.7 5 0.00017 36.8 3.7 39 2-44 236-275 (588)
483 1zcb_A G alpha I/13; GTP-bindi 64.6 2.6 9E-05 36.4 1.8 12 2-13 42-53 (362)
484 1r6b_X CLPA protein; AAA+, N-t 64.6 2.8 9.4E-05 40.0 2.1 16 2-17 497-512 (758)
485 1wf3_A GTP-binding protein; GT 64.5 2.7 9.1E-05 35.3 1.8 15 2-16 16-30 (301)
486 3rlf_A Maltose/maltodextrin im 64.4 2.8 9.7E-05 36.5 2.0 16 2-17 38-53 (381)
487 2x77_A ADP-ribosylation factor 64.2 2.4 8E-05 32.3 1.3 14 2-15 31-44 (189)
488 3d31_A Sulfate/molybdate ABC t 63.7 2.2 7.7E-05 36.7 1.2 25 2-29 35-59 (348)
489 3a1s_A Iron(II) transport prot 63.6 3 0.0001 34.0 1.9 15 2-16 14-28 (258)
490 3tui_C Methionine import ATP-b 63.5 3 0.0001 36.1 2.0 25 2-29 63-87 (366)
491 3gqb_B V-type ATP synthase bet 63.5 5.7 0.0002 35.4 3.8 45 2-46 156-210 (464)
492 2xtp_A GTPase IMAP family memb 63.2 3.1 0.00011 33.7 2.0 15 2-16 31-45 (260)
493 2npi_A Protein CLP1; CLP1-PCF1 62.8 3.3 0.00011 37.1 2.1 16 2-17 147-162 (460)
494 3lxw_A GTPase IMAP family memb 62.6 3.1 0.0001 33.7 1.8 15 2-16 30-44 (247)
495 2ewv_A Twitching motility prot 62.2 3.4 0.00012 35.8 2.1 17 2-18 145-161 (372)
496 1ko7_A HPR kinase/phosphatase; 62.1 3.5 0.00012 34.9 2.1 15 2-16 153-167 (314)
497 3gd7_A Fusion complex of cysti 62.1 3.3 0.00011 36.2 2.0 16 2-17 56-71 (390)
498 2qag_C Septin-7; cell cycle, c 62.1 2.7 9.3E-05 37.1 1.4 16 2-17 40-55 (418)
499 2qm8_A GTPase/ATPase; G protei 62.0 3.4 0.00012 35.3 2.0 17 2-18 64-80 (337)
500 2yc2_C IFT27, small RAB-relate 61.9 1.6 5.6E-05 33.6 0.0 15 2-16 29-43 (208)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.7e-37 Score=287.16 Aligned_cols=231 Identities=13% Similarity=0.056 Sum_probs=166.8
Q ss_pred CCCCcHHHHHHHHHh--hhccCCCCCeEEEEEeCCCC--CHHHHHHHHHHHhCCCCC--------cCCHhhhHHhHHHHc
Q 041028 1 MGGIGKTTLAKEVAR--KAKNGKLFDQIVFTEVSQNP--NIKKIQGEIAFKLGLKFD--------EESESGRTRSPWSRL 68 (283)
Q Consensus 1 mgGiGKTtLA~~v~~--~~~~~~~Fd~~~wv~v~~~~--~~~~l~~~i~~~l~~~~~--------~~~~~~~~~~l~~~L 68 (283)
||||||||||+++|+ +.++..+|++++||++++.+ ++..+++.|+.+++.... ..+...+...+++.|
T Consensus 160 ~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L 239 (549)
T 2a5y_B 160 RAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNAL 239 (549)
T ss_dssp STTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHH
Confidence 899999999999998 56677889999999999885 899999999999986522 113445678999999
Q ss_pred cCC-cEEEE---------------cC--------------------------------------eecCCCCCCCcchHHH
Q 041028 69 KKE-KLQII---------------CG--------------------------------------KKMEGDYAEGSELKWL 94 (283)
Q Consensus 69 ~~k-r~LlV---------------~G--------------------------------------~~~~~~~~~~~~~~~~ 94 (283)
+++ ||||| .| +.+++.. ..+.+.++
T Consensus 240 ~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~ 318 (549)
T 2a5y_B 240 IDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP-VGEKEEDV 318 (549)
T ss_dssp TTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHH
T ss_pred cCCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC-CchhHHHH
Confidence 996 99999 11 1223221 23677889
Q ss_pred HHHHHHhcCCchHHHHH---hhccCChHHHHHHHHHhcCCCCCCCCCchhHHHHHHhhhhccCCCCcHHHHHH-------
Q 041028 95 AMDVAKECAGLPVSIVT---GIKEQELFEWKDALEQLRRPSSTNFKDVQPAAYKAMELGYNKLEGDELKSTFL------- 164 (283)
Q Consensus 95 ~~~i~~~c~glPLal~~---~l~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl------- 164 (283)
+++|+++|+|+||||++ .++.+ .++|...+....... . ...+..++.+||+.||++ +|.||+
T Consensus 319 ~~~I~~~c~GlPLAl~~~g~~l~~~-~w~~~~~l~~~l~~~---~---~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er 390 (549)
T 2a5y_B 319 LNKTIELSSGNPATLMMFFKSCEPK-TFEKMAQLNNKLESR---G---LVGVECITPYSYKSLAMA-LQRCVEVLSDEDR 390 (549)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTCCSS-SHHHHHHHHHHHHHH---C---SSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHhccc-hHHHHHHhHHHhhcc---c---HHHHHHHHhcccccccHH-HHHHHhccchhhh
Confidence 99999999999999999 34444 233433332211110 0 234678899999999998 999999
Q ss_pred ----HHhhCc-CCCHHHHHHHHhhc--cccCCCchHHHHHHHHHHHHHHHHhccccccccCCCcceEEechhHHHHHHHH
Q 041028 165 ----LIGYTA-IASIDDLLMYGMGL--GLFQGVNKMEAARARVHTLVHKLKASCMLLDHTSKNEKLFSIHDVVRDVAISI 237 (283)
Q Consensus 165 ----~~s~fp-~i~~~~l~~~w~ae--g~~~~~~~~~~~~~~~~~~~~~L~~~sLl~~~~~~~~~~~~mH~lv~~~a~~~ 237 (283)
|||+|| +.+.. +++|+|+ ||+.........++.++ ++++|+++||+++...++..+|+|||+||+||+++
T Consensus 391 ~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~ 467 (549)
T 2a5y_B 391 SALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHV 467 (549)
T ss_dssp HHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTT
T ss_pred hHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHH
Confidence 999998 33333 7899999 99965321111223334 88899999999877654446899999999999998
Q ss_pred HccCCc
Q 041028 238 ASGEQN 243 (283)
Q Consensus 238 ~~~~~~ 243 (283)
+.+++.
T Consensus 468 ~~~~~~ 473 (549)
T 2a5y_B 468 VDAQTI 473 (549)
T ss_dssp SCTHHH
T ss_pred HHHHHH
Confidence 877654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.96 E-value=4.6e-29 Score=251.74 Aligned_cols=227 Identities=16% Similarity=0.198 Sum_probs=170.6
Q ss_pred CCCCcHHHHHHHHHhhhcc-CCCC-CeEEEEEeCCCCC--HHHHHHHHHHHhCCCCC-----cCCHhhhHHhHHHHccCC
Q 041028 1 MGGIGKTTLAKEVARKAKN-GKLF-DQIVFTEVSQNPN--IKKIQGEIAFKLGLKFD-----EESESGRTRSPWSRLKKE 71 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~-~~~F-d~~~wv~v~~~~~--~~~l~~~i~~~l~~~~~-----~~~~~~~~~~l~~~L~~k 71 (283)
||||||||||+++|++.+. ..+| +.++||++++..+ ....+..++..++.... ..+..+..+.++..|.++
T Consensus 155 ~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 234 (1249)
T 3sfz_A 155 MAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRK 234 (1249)
T ss_dssp STTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSS
T ss_pred CCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhcc
Confidence 8999999999999998543 3445 8899999998543 45557778888865432 235667788899999877
Q ss_pred --cEEEE--------------cC---------eec----CCC-----------------------CCCCcchHHHHHHHH
Q 041028 72 --KLQII--------------CG---------KKM----EGD-----------------------YAEGSELKWLAMDVA 99 (283)
Q Consensus 72 --r~LlV--------------~G---------~~~----~~~-----------------------~~~~~~~~~~~~~i~ 99 (283)
|+||| .| ..+ .+. ....+.+.+.+++|+
T Consensus 235 ~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~ 314 (1249)
T 3sfz_A 235 HPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSII 314 (1249)
T ss_dssp SCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHH
T ss_pred CCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHH
Confidence 99999 11 000 000 011233456789999
Q ss_pred HhcCCchHHHHH---hhccCChHHHHHHHHHhcCCCCCCC----CCchhHHHHHHhhhhccCCCCcHHHHHHHHhhCc--
Q 041028 100 KECAGLPVSIVT---GIKEQELFEWKDALEQLRRPSSTNF----KDVQPAAYKAMELGYNKLEGDELKSTFLLIGYTA-- 170 (283)
Q Consensus 100 ~~c~glPLal~~---~l~~~~~~~w~~~l~~l~~~~~~~~----~~~~~~~~~~l~~sy~~L~~~~~k~~fl~~s~fp-- 170 (283)
++|+|+||||++ .++... ..|...++.+.......+ .....++..+|.+||+.||++ +|.||+|||+||
T Consensus 315 ~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~ 392 (1249)
T 3sfz_A 315 KECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKD 392 (1249)
T ss_dssp HHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTT
T ss_pred HHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCC
Confidence 999999999999 444333 579999998876543222 122467999999999999998 999999999998
Q ss_pred -CCCHHHHHHHHhhccccCCCchHHHHHHHHHHHHHHHHhccccccccCCCcceEEechhHHHHHHHHHccC
Q 041028 171 -IASIDDLLMYGMGLGLFQGVNKMEAARARVHTLVHKLKASCMLLDHTSKNEKLFSIHDVVRDVAISIASGE 241 (283)
Q Consensus 171 -~i~~~~l~~~w~aeg~~~~~~~~~~~~~~~~~~~~~L~~~sLl~~~~~~~~~~~~mH~lv~~~a~~~~~~~ 241 (283)
.|+.+.++.+|.+++ +.+..++++|+++||++....++..+|+||++||+|++..+.++
T Consensus 393 ~~i~~~~~~~~~~~~~------------~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 393 VKVPTKVLCVLWDLET------------EEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp CCEEHHHHHHHHTCCH------------HHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred CeeCHHHHHHHhCCCH------------HHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 789999999996552 34457788888899998766554457999999999999997765
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.94 E-value=4.4e-27 Score=226.30 Aligned_cols=206 Identities=16% Similarity=0.102 Sum_probs=146.4
Q ss_pred CCCCcHHHHHHHHHhhhccCCCCCe-EEEEEeCCCCCHHHHHHHHHHHhCC---CCC--c-------CCHhhhHHhHHHH
Q 041028 1 MGGIGKTTLAKEVARKAKNGKLFDQ-IVFTEVSQNPNIKKIQGEIAFKLGL---KFD--E-------ESESGRTRSPWSR 67 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~~~Fd~-~~wv~v~~~~~~~~l~~~i~~~l~~---~~~--~-------~~~~~~~~~l~~~ 67 (283)
||||||||||+++|++.++..+|+. ++||++++.++...++..|++.++. ... . .+.++..+.+++.
T Consensus 158 mGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~l 237 (1221)
T 1vt4_I 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237 (1221)
T ss_dssp STTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHH
Confidence 8999999999999998766667965 9999999999998888888875432 111 0 0223445667776
Q ss_pred c---cCCcEEEE--------------cC---------ee----cCCC-----C------CCC-cchHHHH---------H
Q 041028 68 L---KKEKLQII--------------CG---------KK----MEGD-----Y------AEG-SELKWLA---------M 96 (283)
Q Consensus 68 L---~~kr~LlV--------------~G---------~~----~~~~-----~------~~~-~~~~~~~---------~ 96 (283)
| .+||+||| .| .. ..+. . ..+ .+-.++- .
T Consensus 238 L~~l~~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~ee 317 (1221)
T 1vt4_I 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317 (1221)
T ss_dssp HHHSTTSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTT
T ss_pred HHhhcCCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHH
Confidence 6 67899999 12 00 0000 0 000 0000000 1
Q ss_pred HHHHhcCCchHHHHH---hhccC--ChHHHHHHHHHhcCCCCCCCCCchhHHHHHHhhhhccCCCCcH-HHHHHHHhhCc
Q 041028 97 DVAKECAGLPVSIVT---GIKEQ--ELFEWKDALEQLRRPSSTNFKDVQPAAYKAMELGYNKLEGDEL-KSTFLLIGYTA 170 (283)
Q Consensus 97 ~i~~~c~glPLal~~---~l~~~--~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~-k~~fl~~s~fp 170 (283)
...+.|+|+||||++ .|+.. +...|... + ...+..+|++||+.||++ . |.||+|||+||
T Consensus 318 L~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~----------~----~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFP 382 (1221)
T 1vt4_I 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHV----------N----CDKLTTIIESSLNVLEPA-EYRKMFDRLSVFP 382 (1221)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHC----------S----CHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSC
T ss_pred HHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcC----------C----hhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCC
Confidence 122459999999999 45533 67788642 1 467899999999999998 8 99999999999
Q ss_pred ---CCCHHHHHHHHhhccccCCCchHHHHHHHHHHHHHHHHhccccccccCCCcceEEechhHHHHH
Q 041028 171 ---IASIDDLLMYGMGLGLFQGVNKMEAARARVHTLVHKLKASCMLLDHTSKNEKLFSIHDVVRDVA 234 (283)
Q Consensus 171 ---~i~~~~l~~~w~aeg~~~~~~~~~~~~~~~~~~~~~L~~~sLl~~~~~~~~~~~~mH~lv~~~a 234 (283)
.|+.+.++.+|+++|. +.+..++++|+++||++..... .+|+||||+++++
T Consensus 383 ed~~I~~elLa~LW~aeGe-----------edAe~~L~eLvdRSLLq~d~~~--~rYrMHDLllELr 436 (1221)
T 1vt4_I 383 PSAHIPTILLSLIWFDVIK-----------SDVMVVVNKLHKYSLVEKQPKE--STISIPSIYLELK 436 (1221)
T ss_dssp TTSCEEHHHHHHHHCSSCS-----------HHHHHHHHHHHTSSSSSBCSSS--SEEBCCCHHHHHH
T ss_pred CCCCCCHHHHHHHhcCCCH-----------HHHHHHHHHHHhhCCEEEeCCC--CEEEehHHHHHHh
Confidence 6889999999998871 1355788889999999875333 6899999999865
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.93 E-value=7.9e-26 Score=212.53 Aligned_cols=224 Identities=17% Similarity=0.190 Sum_probs=158.5
Q ss_pred CCCCcHHHHHHHHHhhhcc-CCCC-CeEEEEEeCCCCCHHHHHH---HHHHHhCCC-----CCcCCHhhhHHhHHHHccC
Q 041028 1 MGGIGKTTLAKEVARKAKN-GKLF-DQIVFTEVSQNPNIKKIQG---EIAFKLGLK-----FDEESESGRTRSPWSRLKK 70 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~-~~~F-d~~~wv~v~~~~~~~~l~~---~i~~~l~~~-----~~~~~~~~~~~~l~~~L~~ 70 (283)
||||||||||.++|++... ..+| ++++|++++.. +...++. .++..++.. ....+.......++..+.+
T Consensus 155 ~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 233 (591)
T 1z6t_A 155 MAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR 233 (591)
T ss_dssp CTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHcc
Confidence 7999999999999987643 4569 68999999876 3333333 344566531 1223555677788888876
Q ss_pred --CcEEEE--------------cC---------e-----------ec-----CCC-----------CCCCcchHHHHHHH
Q 041028 71 --EKLQII--------------CG---------K-----------KM-----EGD-----------YAEGSELKWLAMDV 98 (283)
Q Consensus 71 --kr~LlV--------------~G---------~-----------~~-----~~~-----------~~~~~~~~~~~~~i 98 (283)
+++||| .| . .+ +.. ........+.+.+|
T Consensus 234 ~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i 313 (591)
T 1z6t_A 234 KHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSI 313 (591)
T ss_dssp TCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHH
T ss_pred CCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcCCCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHH
Confidence 688888 11 0 00 000 00112234578899
Q ss_pred HHhcCCchHHHHH---hhccCChHHHHHHHHHhcCCCCCCC----CCchhHHHHHHhhhhccCCCCcHHHHHHHHhhCc-
Q 041028 99 AKECAGLPVSIVT---GIKEQELFEWKDALEQLRRPSSTNF----KDVQPAAYKAMELGYNKLEGDELKSTFLLIGYTA- 170 (283)
Q Consensus 99 ~~~c~glPLal~~---~l~~~~~~~w~~~l~~l~~~~~~~~----~~~~~~~~~~l~~sy~~L~~~~~k~~fl~~s~fp- 170 (283)
+++|+|+||||++ .++.. ...|...++.+.......+ .....++..++.+||+.||++ .|.||++||+||
T Consensus 314 ~~~~~G~PLal~~~a~~l~~~-~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~ 391 (591)
T 1z6t_A 314 IKECKGSPLVVSLIGALLRDF-PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQK 391 (591)
T ss_dssp HHHHTTCHHHHHHHHHHHHHS-TTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCT
T ss_pred HHHhCCCcHHHHHHHHHHhcC-chhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCC
Confidence 9999999999999 34433 3479988888876542211 122468999999999999998 999999999998
Q ss_pred --CCCHHHHHHHHhhccccCCCchHHHHHHHHHHHHHHHHhccccccccCCCcceEEechhHHHHHHHHHc
Q 041028 171 --IASIDDLLMYGMGLGLFQGVNKMEAARARVHTLVHKLKASCMLLDHTSKNEKLFSIHDVVRDVAISIAS 239 (283)
Q Consensus 171 --~i~~~~l~~~w~aeg~~~~~~~~~~~~~~~~~~~~~L~~~sLl~~~~~~~~~~~~mH~lv~~~a~~~~~ 239 (283)
.|+.+.+..+|.+++ ..+..+++.|+++||++...++...+|+||+++|++++....
T Consensus 392 ~~~i~~~~l~~l~~~~~------------~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 392 DVKVPTKVLCILWDMET------------EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp TCCEEHHHHHHHHTCCH------------HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred CCccCHHHHHHHhccCH------------HHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 589999999995431 234577888888999976554434689999999999998843
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.04 E-value=0.00014 Score=62.82 Aligned_cols=116 Identities=15% Similarity=0.088 Sum_probs=61.9
Q ss_pred HHHHHHHHhcCCchHHHHH-h--hc-cCChHHHHHHHHHhcCCCCCCCCCchhHHHHHHhhhhccC---CCCcHHHHHHH
Q 041028 93 WLAMDVAKECAGLPVSIVT-G--IK-EQELFEWKDALEQLRRPSSTNFKDVQPAAYKAMELGYNKL---EGDELKSTFLL 165 (283)
Q Consensus 93 ~~~~~i~~~c~glPLal~~-~--l~-~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L---~~~~~k~~fl~ 165 (283)
+.+..|...|+|+|+++.. . +. ..+...+. ..+ ...+...+.-.+..+ ++. .+..+..
T Consensus 226 ~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~---~~~-----------~~~~~~~~~~~l~~l~~~~~~-~~~~l~~ 290 (350)
T 2qen_A 226 NEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAM---KRT-----------LEVAKGLIMGELEELRRRSPR-YVDILRA 290 (350)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHH---HHH-----------HHHHHHHHHHHHHHHHHHCHH-HHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHH---HHH-----------HHHHHHHHHHHHHHHHhCChh-HHHHHHH
Confidence 3566788999999999987 2 11 22222221 111 001111111112222 565 8888888
Q ss_pred HhhCcCCCHHHHHHHHhhccccCCCchHHHHHHHHHHHHHHHHhccccccccCCCcceEEe-chhHHHHHH
Q 041028 166 IGYTAIASIDDLLMYGMGLGLFQGVNKMEAARARVHTLVHKLKASCMLLDHTSKNEKLFSI-HDVVRDVAI 235 (283)
Q Consensus 166 ~s~fp~i~~~~l~~~w~aeg~~~~~~~~~~~~~~~~~~~~~L~~~sLl~~~~~~~~~~~~m-H~lv~~~a~ 235 (283)
+|. ..++...+........ - . .+ ......+++.|.+.+||...+ ..|++ |++++.+.+
T Consensus 291 la~-g~~~~~~l~~~~~~~~-~-~-~~----~~~~~~~l~~L~~~gli~~~~----~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 291 IAL-GYNRWSLIRDYLAVKG-T-K-IP----EPRLYALLENLKKMNWIVEED----NTYKIADPVVATVLR 349 (350)
T ss_dssp HHT-TCCSHHHHHHHHHHTT-C-C-CC----HHHHHHHHHHHHHTTSEEEET----TEEEESSHHHHHHHT
T ss_pred HHh-CCCCHHHHHHHHHHHh-C-C-CC----HHHHHHHHHHHHhCCCEEecC----CEEEEecHHHHHHHc
Confidence 887 3345556554432211 0 0 11 123456778888899996542 35665 668887653
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.61 E-value=0.00013 Score=64.61 Aligned_cols=76 Identities=22% Similarity=0.268 Sum_probs=52.5
Q ss_pred CCCCcHHHHHHHHHhhhccC---CCCC-eEEEEEeCCCCCHHHHHHHHHHHhCCCCC--cCCHhhhHHhHHHHcc--CCc
Q 041028 1 MGGIGKTTLAKEVARKAKNG---KLFD-QIVFTEVSQNPNIKKIQGEIAFKLGLKFD--EESESGRTRSPWSRLK--KEK 72 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~---~~Fd-~~~wv~v~~~~~~~~l~~~i~~~l~~~~~--~~~~~~~~~~l~~~L~--~kr 72 (283)
++|+||||||+++++..... ..|+ .++|++.....+...++..++.+++.... ..+..+....+.+.+. +++
T Consensus 60 ~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 139 (412)
T 1w5s_A 60 RVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHY 139 (412)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCE
T ss_pred cCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCe
Confidence 47999999999999876431 1132 35788877777889999999999976533 2234455566666664 556
Q ss_pred EEEE
Q 041028 73 LQII 76 (283)
Q Consensus 73 ~LlV 76 (283)
++||
T Consensus 140 ~llv 143 (412)
T 1w5s_A 140 LLVI 143 (412)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6555
No 7
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.94 E-value=0.0011 Score=58.11 Aligned_cols=48 Identities=17% Similarity=0.170 Sum_probs=34.0
Q ss_pred CCCCcHHHHHHHHHhhhccC----CC--CCeEEEEEeCCCC-CHHHHHHHHHHHh
Q 041028 1 MGGIGKTTLAKEVARKAKNG----KL--FDQIVFTEVSQNP-NIKKIQGEIAFKL 48 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~----~~--Fd~~~wv~v~~~~-~~~~l~~~i~~~l 48 (283)
.+|+||||||+.+++..... .. ....+|++..... +...++..++..+
T Consensus 53 ~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l 107 (384)
T 2qby_B 53 LTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKL 107 (384)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHh
Confidence 47999999999999875321 11 2346777776655 7777777777776
No 8
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.92 E-value=0.0039 Score=54.34 Aligned_cols=68 Identities=19% Similarity=0.268 Sum_probs=43.9
Q ss_pred CCCCcHHHHHHHHHhhhccC----CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC--cCCHhhhHHhHHHHc
Q 041028 1 MGGIGKTTLAKEVARKAKNG----KLFDQIVFTEVSQNPNIKKIQGEIAFKLGLKFD--EESESGRTRSPWSRL 68 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~----~~Fd~~~wv~v~~~~~~~~l~~~i~~~l~~~~~--~~~~~~~~~~l~~~L 68 (283)
.+|+||||||+.+++..... +.--..+|++.....+...++..++.+++.... ..+..+....+.+.+
T Consensus 52 ~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l 125 (387)
T 2v1u_A 52 LTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRL 125 (387)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 37999999999999876321 001245777777777888888888888765432 123344444555555
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.78 E-value=0.0077 Score=52.53 Aligned_cols=49 Identities=27% Similarity=0.293 Sum_probs=37.7
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIAFKLGLK 51 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~~~l~~~ 51 (283)
+|+||||||+.+++....... -..+|++.+...+...++..++..++..
T Consensus 53 ~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~~~l~~~ 101 (389)
T 1fnn_A 53 PGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEIARSLNIP 101 (389)
T ss_dssp TTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHHHHHhCcc
Confidence 699999999999988654311 2467777777778888888888888654
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.67 E-value=0.0025 Score=55.50 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=33.2
Q ss_pred CCCCcHHHHHHHHHhhhccCCC-CCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 041028 1 MGGIGKTTLAKEVARKAKNGKL-FDQIVFTEVSQNPNIKKIQGEIAFKLGL 50 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~~~-Fd~~~wv~v~~~~~~~~l~~~i~~~l~~ 50 (283)
.+|+||||||+.+++....... -...+|++.....+...++..++..++.
T Consensus 53 ~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~ 103 (386)
T 2qby_A 53 LTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDV 103 (386)
T ss_dssp CTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4799999999999987653310 1245777765555666666666666654
No 11
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.48 E-value=0.0083 Score=51.10 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=22.9
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQG 42 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~ 42 (283)
+|+|||+||+.+++.... ..++++.+......++..
T Consensus 47 ~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l~~ 82 (324)
T 1hqc_A 47 PGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDLAA 82 (324)
T ss_dssp TTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHHHH
Confidence 699999999999987642 123454444444444443
No 12
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.036 Score=47.37 Aligned_cols=49 Identities=10% Similarity=0.153 Sum_probs=34.3
Q ss_pred CCCcHHHHHHHHHhhhccCCC---CC--eEEEEEeCCCCCHHHHHHHHHHHhCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKL---FD--QIVFTEVSQNPNIKKIQGEIAFKLGL 50 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~---Fd--~~~wv~v~~~~~~~~l~~~i~~~l~~ 50 (283)
+|+|||++++++++....... .. ..+.|+...-.+...++..|++++..
T Consensus 54 PGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g 107 (318)
T 3te6_A 54 DDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISK 107 (318)
T ss_dssp CSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcC
Confidence 799999999999998753211 11 23555555667888999999999954
No 13
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.33 E-value=0.052 Score=46.40 Aligned_cols=114 Identities=10% Similarity=0.027 Sum_probs=61.4
Q ss_pred HHHHHhcCCchHHHHH---hhc-cCChHHHHHH-HHHhcCCCCCCCCCchhHHHHHHh-hhh--ccCCCCcHHHHHHHHh
Q 041028 96 MDVAKECAGLPVSIVT---GIK-EQELFEWKDA-LEQLRRPSSTNFKDVQPAAYKAME-LGY--NKLEGDELKSTFLLIG 167 (283)
Q Consensus 96 ~~i~~~c~glPLal~~---~l~-~~~~~~w~~~-l~~l~~~~~~~~~~~~~~~~~~l~-~sy--~~L~~~~~k~~fl~~s 167 (283)
..|...|+|+|+++.. .+. ..+...|..- .+.. ...+...+. +.+ ..|++. .+..+..+|
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~l~~~-~~~~l~~la 300 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-----------KKLILKEFENFLHGREIARKR-YLNIMRTLS 300 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-----------HHHHHHHHHHHHTTCGGGHHH-HHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-----------HHHHHHHHHHHhhccccccHH-HHHHHHHHH
Confidence 4678899999999987 222 2333333211 1110 111122222 111 157776 899999888
Q ss_pred hCcCCCHHHHHHHHh-hccccCCCchHHHHHHHHHHHHHHHHhccccccccCCCcceEEe-chhHHHHH
Q 041028 168 YTAIASIDDLLMYGM-GLGLFQGVNKMEAARARVHTLVHKLKASCMLLDHTSKNEKLFSI-HDVVRDVA 234 (283)
Q Consensus 168 ~fp~i~~~~l~~~w~-aeg~~~~~~~~~~~~~~~~~~~~~L~~~sLl~~~~~~~~~~~~m-H~lv~~~a 234 (283)
.-+ +...+..... ..|. + . .......+++.|++.+||...+ ..|++ |++++++.
T Consensus 301 ~g~--~~~~l~~~~~~~~g~--~-~----~~~~~~~~L~~L~~~gli~~~~----~~y~f~~~~~~~~l 356 (357)
T 2fna_A 301 KCG--KWSDVKRALELEEGI--E-I----SDSEIYNYLTQLTKHSWIIKEG----EKYCPSEPLISLAF 356 (357)
T ss_dssp TCB--CHHHHHHHHHHHHCS--C-C----CHHHHHHHHHHHHHTTSEEESS----SCEEESSHHHHHHT
T ss_pred cCC--CHHHHHHHHHHhcCC--C-C----CHHHHHHHHHHHHhCCCEEecC----CEEEecCHHHHHhh
Confidence 833 5555543221 1121 0 0 1123456778888899996543 35764 67888764
No 14
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.27 E-value=0.043 Score=42.39 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=15.3
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+||||||+.+++...
T Consensus 47 ~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 47 PGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SSSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 59999999999998864
No 15
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.07 E-value=0.035 Score=43.72 Aligned_cols=28 Identities=25% Similarity=0.221 Sum_probs=20.9
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEe
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEV 31 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v 31 (283)
+|+|||+||+.+++..... ...++|++.
T Consensus 63 ~GtGKT~la~~i~~~~~~~--~~~~~~~~~ 90 (202)
T 2w58_A 63 FGVGKTYLLAAIANELAKR--NVSSLIVYV 90 (202)
T ss_dssp TTSSHHHHHHHHHHHHHTT--TCCEEEEEH
T ss_pred CCCCHHHHHHHHHHHHHHc--CCeEEEEEh
Confidence 6999999999999987643 334566654
No 16
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.03 E-value=0.16 Score=40.19 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=28.5
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIAFKL 48 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~~~l 48 (283)
+|+||||||..++. .. -..++|++....++...+.. +.+.+
T Consensus 29 ~GsGKTtl~~~l~~-~~----~~~v~~i~~~~~~~~~~~~~-~~~~~ 69 (220)
T 2cvh_A 29 YASGKTTLALQTGL-LS----GKKVAYVDTEGGFSPERLVQ-MAETR 69 (220)
T ss_dssp TTSSHHHHHHHHHH-HH----CSEEEEEESSCCCCHHHHHH-HHHTT
T ss_pred CCCCHHHHHHHHHH-Hc----CCcEEEEECCCCCCHHHHHH-HHHhc
Confidence 69999999999988 21 24688888877666655443 44433
No 17
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.80 E-value=0.028 Score=43.19 Aligned_cols=18 Identities=11% Similarity=0.135 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
++|+||||+|+.+.....
T Consensus 11 ~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 11 GSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CTTSSHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 579999999999998754
No 18
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.78 E-value=0.24 Score=43.08 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=45.1
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------cCCHhhhHHhHHHHccC--CcE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIAFKLGLKFD------EESESGRTRSPWSRLKK--EKL 73 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~~~L~~--kr~ 73 (283)
+|+||||||.+++...... =..++|++....++.. .++.++.+.+ ..+.++..+.+....+. -.+
T Consensus 83 pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~l 155 (366)
T 1xp8_A 83 ESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDV 155 (366)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSE
T ss_pred CCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCE
Confidence 6999999999988765433 2368999998877654 2456665422 12445555566655543 367
Q ss_pred EEEcC
Q 041028 74 QIICG 78 (283)
Q Consensus 74 LlV~G 78 (283)
+||+.
T Consensus 156 VVIDs 160 (366)
T 1xp8_A 156 VVVDS 160 (366)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 77743
No 19
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.72 E-value=0.21 Score=43.30 Aligned_cols=69 Identities=17% Similarity=0.157 Sum_probs=44.3
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------cCCHhhhHHhHHHHccC--CcE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIAFKLGLKFD------EESESGRTRSPWSRLKK--EKL 73 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~~~L~~--kr~ 73 (283)
+|+||||||.+++......+ ..++|++....++.. .++.++...+ ..+.++....+...++. -.+
T Consensus 70 pGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dl 142 (356)
T 3hr8_A 70 ESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDL 142 (356)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSE
T ss_pred CCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCe
Confidence 69999999999988755331 347888887777754 5566665432 22445555555555532 367
Q ss_pred EEEc
Q 041028 74 QIIC 77 (283)
Q Consensus 74 LlV~ 77 (283)
++|+
T Consensus 143 vVID 146 (356)
T 3hr8_A 143 IVVD 146 (356)
T ss_dssp EEEE
T ss_pred EEeh
Confidence 7774
No 20
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.53 E-value=0.085 Score=41.52 Aligned_cols=38 Identities=26% Similarity=0.324 Sum_probs=23.0
Q ss_pred CCCcHHHHHHHHHhhhccCCCC-CeEEEEEeCCCCCHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLF-DQIVFTEVSQNPNIKKI 40 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~F-d~~~wv~v~~~~~~~~l 40 (283)
+|+|||+||+.+++..... .+ ...+.++.+.......+
T Consensus 47 ~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 85 (226)
T 2chg_A 47 PGTGKTATAIALARDLFGE-NWRDNFIEMNASDERGIDVV 85 (226)
T ss_dssp TTSSHHHHHHHHHHHHHGG-GGGGGEEEEETTCTTCHHHH
T ss_pred CCCCHHHHHHHHHHHHhcc-ccccceEEeccccccChHHH
Confidence 6999999999999875332 12 22344444444444333
No 21
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.50 E-value=0.24 Score=42.25 Aligned_cols=46 Identities=7% Similarity=-0.086 Sum_probs=33.2
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIAFKLGLKF 52 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~~~l~~~~ 52 (283)
+|+||||||.+++........=..++||+....++.. .++++|.+.
T Consensus 37 pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~ 82 (333)
T 3io5_A 37 SKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDP 82 (333)
T ss_dssp SSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCG
T ss_pred CCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCH
Confidence 6999999999987765432101467999988888764 377888764
No 22
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.47 E-value=0.089 Score=41.86 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=27.2
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQ 41 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~ 41 (283)
||+||||+|..++......+ .++-|+.....+....+
T Consensus 10 GGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~~~~ 46 (209)
T 3cwq_A 10 GGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSATGWG 46 (209)
T ss_dssp TTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHHHHh
Confidence 89999999999998876542 57777777655544433
No 23
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.19 E-value=0.052 Score=43.59 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=21.7
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVS 32 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~ 32 (283)
+|+||||||+.+++..... ...+.|++.+
T Consensus 61 ~G~GKT~la~~l~~~~~~~--~~~~~~~~~~ 89 (242)
T 3bos_A 61 VKSGRTHLIHAACARANEL--ERRSFYIPLG 89 (242)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEEGG
T ss_pred CCCCHHHHHHHHHHHHHHc--CCeEEEEEHH
Confidence 6999999999999886544 3345666654
No 24
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.14 E-value=0.36 Score=41.66 Aligned_cols=70 Identities=19% Similarity=0.171 Sum_probs=44.0
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------cCCHhhhHHhHHHHccC--CcE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIAFKLGLKFD------EESESGRTRSPWSRLKK--EKL 73 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~~~L~~--kr~ 73 (283)
+|+||||||.+++...... =..++|++....++.. .++.++...+ ..+.++..+.+....+. -++
T Consensus 70 pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~l 142 (349)
T 2zr9_A 70 ESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDI 142 (349)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSE
T ss_pred CCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCE
Confidence 6999999999998765433 2367899988777653 3556665422 12344445555555443 367
Q ss_pred EEEcC
Q 041028 74 QIICG 78 (283)
Q Consensus 74 LlV~G 78 (283)
+||+.
T Consensus 143 IVIDs 147 (349)
T 2zr9_A 143 IVIDS 147 (349)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 77743
No 25
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.11 E-value=0.17 Score=43.00 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=31.9
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIAFKL 48 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~~~l 48 (283)
+|+||||||..++.....++ ..++|++.. .+..++..+++...
T Consensus 77 pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 77 PSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 79999999999987765443 578888766 55677777776543
No 26
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.09 E-value=0.17 Score=39.95 Aligned_cols=73 Identities=12% Similarity=0.080 Sum_probs=39.2
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCcC------CHhhhHHhHHHHccCCcEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIAFKLGLKFDEE------SESGRTRSPWSRLKKEKLQI 75 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~------~~~~~~~~l~~~L~~kr~Ll 75 (283)
-|+||||.++.+++..+..+ .+ +++..-.......+..++++..-....... +-.+....+...|...+++|
T Consensus 9 DGsGKsTq~~~L~~~L~~~g-~~-v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L~~g~~Vi 86 (197)
T 3hjn_A 9 DGSGKSTQIQLLAQYLEKRG-KK-VILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLSEGYAVL 86 (197)
T ss_dssp TTSSHHHHHHHHHHHHHHTT-CC-EEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred CCCCHHHHHHHHHHHHHHCC-Cc-EEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHCCCeEE
Confidence 49999999999999876542 23 333333333345555666554322211000 11223345666666666655
Q ss_pred E
Q 041028 76 I 76 (283)
Q Consensus 76 V 76 (283)
.
T Consensus 87 ~ 87 (197)
T 3hjn_A 87 L 87 (197)
T ss_dssp E
T ss_pred e
Confidence 5
No 27
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.04 E-value=0.41 Score=40.34 Aligned_cols=74 Identities=15% Similarity=0.051 Sum_probs=41.0
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCc-CCHhhhHHhHHHHccCCcEEEEc
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQ-NPNIKKIQGEIAFKLGLKFDE-ESESGRTRSPWSRLKKEKLQIIC 77 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~-~~~~~~l~~~i~~~l~~~~~~-~~~~~~~~~l~~~L~~kr~LlV~ 77 (283)
+|+||||++..++.......- ..+..+.... .....+.+....+..+.+... .+..+....+. .+.+..++|++
T Consensus 114 ~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~~~~dlvIiD 189 (296)
T 2px0_A 114 TGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LFSEYDHVFVD 189 (296)
T ss_dssp TTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HGGGSSEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-HhcCCCEEEEe
Confidence 699999999999887653211 1345555432 233444455555555554321 23333333343 34666888884
No 28
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.96 E-value=0.28 Score=42.53 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=42.9
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCc------CCHhhhHHhHHHHcc--CCcE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIAFKLGLKFDE------ESESGRTRSPWSRLK--KEKL 73 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~------~~~~~~~~~l~~~L~--~kr~ 73 (283)
+|+||||||.+++......+ ..++|++....++.. .+..++...+. .+.++..+.++...+ +-++
T Consensus 72 pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~l 144 (356)
T 1u94_A 72 ESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 144 (356)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred CCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCE
Confidence 69999999999887754332 368899998877754 24556654221 233444444444432 3367
Q ss_pred EEEcC
Q 041028 74 QIICG 78 (283)
Q Consensus 74 LlV~G 78 (283)
+||+.
T Consensus 145 VVIDs 149 (356)
T 1u94_A 145 IVVDS 149 (356)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 77743
No 29
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.94 E-value=0.046 Score=41.57 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
+.|+||||+|+.+.....
T Consensus 9 ~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 9 PDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp SSSSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999988754
No 30
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.33 E-value=0.12 Score=41.83 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=26.1
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKK 39 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~ 39 (283)
||+||||+|..++......+ ..++-|+.....++..
T Consensus 9 GGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l~~ 44 (254)
T 3kjh_A 9 GGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCLGQ 44 (254)
T ss_dssp SSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcChHH
Confidence 89999999999998876443 3466677765555443
No 31
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.33 E-value=0.13 Score=40.39 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=24.7
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIK 38 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~ 38 (283)
||+||||+|..++......+ ..++-|+.....+..
T Consensus 11 gG~GKTt~a~~la~~la~~g--~~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 11 GGSGKTTAVINIATALSRSG--YNIAVVDTDPQMSLT 45 (206)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEECCTTCHHH
T ss_pred CCccHHHHHHHHHHHHHHCC--CeEEEEECCCCCCHH
Confidence 89999999999988765432 246667776554443
No 32
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.32 E-value=0.062 Score=41.54 Aligned_cols=18 Identities=33% Similarity=0.586 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
+.|+||||+|+.+.....
T Consensus 13 ~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 13 LMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp STTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998764
No 33
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.26 E-value=0.062 Score=41.15 Aligned_cols=15 Identities=40% Similarity=0.508 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHHh
Q 041028 1 MGGIGKTTLAKEVAR 15 (283)
Q Consensus 1 mgGiGKTtLA~~v~~ 15 (283)
++|+||||+|+.+..
T Consensus 10 ~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 10 CPGSGKSTWAREFIA 24 (181)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 479999999999987
No 34
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.25 E-value=0.051 Score=46.46 Aligned_cols=58 Identities=12% Similarity=0.077 Sum_probs=33.4
Q ss_pred CCCCcHHHHHHHHHhhhccCCCCCeEEEEEe--CCCCCHHHHHHHHHHHhCCCCCcCCHhhhHHhHHHHccCCcEEEEcC
Q 041028 1 MGGIGKTTLAKEVARKAKNGKLFDQIVFTEV--SQNPNIKKIQGEIAFKLGLKFDEESESGRTRSPWSRLKKEKLQIICG 78 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v--~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlV~G 78 (283)
.+|+||||||.+++.... ..++|+++ ++..+. ...+.+...+.+.+.+...+.++|+.
T Consensus 131 pPGsGKTtLAlqlA~~~G-----~~VlyIs~~~eE~v~~---------------~~~~le~~l~~i~~~l~~~~LLVIDs 190 (331)
T 2vhj_A 131 KGNSGKTPLVHALGEALG-----GKDKYATVRFGEPLSG---------------YNTDFNVFVDDIARAMLQHRVIVIDS 190 (331)
T ss_dssp SCSSSHHHHHHHHHHHHH-----TTSCCEEEEBSCSSTT---------------CBCCHHHHHHHHHHHHHHCSEEEEEC
T ss_pred CCCCCHHHHHHHHHHhCC-----CCEEEEEecchhhhhh---------------hhcCHHHHHHHHHHHHhhCCEEEEec
Confidence 479999999999988611 12456666 333111 01334445555666665555555543
No 35
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.16 E-value=0.068 Score=41.40 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
++|+||||+|+.+.....
T Consensus 9 ~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 9 IPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 479999999999998765
No 36
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.15 E-value=0.068 Score=42.07 Aligned_cols=18 Identities=56% Similarity=0.641 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
+.|+||||+|+.+.....
T Consensus 33 ~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 33 YMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 579999999999998764
No 37
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.12 E-value=0.059 Score=40.89 Aligned_cols=13 Identities=46% Similarity=0.649 Sum_probs=12.1
Q ss_pred CCCCcHHHHHHHH
Q 041028 1 MGGIGKTTLAKEV 13 (283)
Q Consensus 1 mgGiGKTtLA~~v 13 (283)
++|+||||+|+.+
T Consensus 9 ~~GsGKsT~a~~L 21 (179)
T 3lw7_A 9 MPGSGKSEFAKLL 21 (179)
T ss_dssp CTTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 5799999999999
No 38
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.10 E-value=0.065 Score=41.10 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||+||+.+++...
T Consensus 52 ~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 52 PGVGKTAIVEGLAQRII 68 (195)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 69999999999998754
No 39
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.06 E-value=0.07 Score=43.14 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=21.4
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQ 33 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~ 33 (283)
||+||||+|..++.....++ ++ ++.+.+..
T Consensus 15 gGvGKTt~a~~la~~l~~~G-~~-V~v~d~D~ 44 (228)
T 2r8r_A 15 PGVGKTYAMLQAAHAQLRQG-VR-VMAGVVET 44 (228)
T ss_dssp TTSSHHHHHHHHHHHHHHTT-CC-EEEEECCC
T ss_pred CCCcHHHHHHHHHHHHHHCC-CC-EEEEEeCC
Confidence 89999999999998865443 33 44555544
No 40
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.86 E-value=0.077 Score=41.04 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
++|+||||+|+.+.....
T Consensus 11 ~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 11 VPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 479999999999998765
No 41
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.80 E-value=0.08 Score=40.60 Aligned_cols=18 Identities=39% Similarity=0.602 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
++|+||||+|+.++....
T Consensus 12 ~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 12 FMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 479999999999998754
No 42
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.74 E-value=0.36 Score=38.76 Aligned_cols=48 Identities=15% Similarity=0.134 Sum_probs=31.9
Q ss_pred CCCcHHHHHHHHHhhhccCC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 041028 2 GGIGKTTLAKEVARKAKNGK----LFDQIVFTEVSQNPNIKKIQGEIAFKLGL 50 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~----~Fd~~~wv~v~~~~~~~~l~~~i~~~l~~ 50 (283)
+|+|||||+..++....... .-..++|++....++...+ .++++.++.
T Consensus 33 ~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~ 84 (243)
T 1n0w_A 33 FRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGL 84 (243)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTC
T ss_pred CCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCC
Confidence 69999999999987532211 1257899988776665544 345555654
No 43
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.74 E-value=0.079 Score=41.11 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
++|+||||+|+.+.....
T Consensus 13 ~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 13 HPATGKTTLSQALATGLR 30 (193)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 479999999999988653
No 44
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.73 E-value=0.32 Score=41.35 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=33.5
Q ss_pred CCCcHHHHHHHHHhhhccCC---------CC-----CeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 041028 2 GGIGKTTLAKEVARKAKNGK---------LF-----DQIVFTEVSQNPNIKKIQGEIAFKLGL 50 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~---------~F-----d~~~wv~v~~~~~~~~l~~~i~~~l~~ 50 (283)
+|+||||||..++....... .. ..++|++....++...+.. +++.++.
T Consensus 107 ~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~ 168 (322)
T 2i1q_A 107 FGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGI 168 (322)
T ss_dssp TTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTC
T ss_pred CCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 69999999999887532110 11 4689999988888777664 4566665
No 45
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.63 E-value=0.084 Score=41.29 Aligned_cols=18 Identities=33% Similarity=0.567 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
+.|+||||+|+.+.....
T Consensus 8 ~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 8 TVGAGKSTISAEISKKLG 25 (205)
T ss_dssp CTTSCHHHHHHHHHHHHC
T ss_pred CCccCHHHHHHHHHHhcC
Confidence 479999999999998764
No 46
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.61 E-value=0.084 Score=40.65 Aligned_cols=18 Identities=56% Similarity=0.756 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
++|+||||+|+.+.....
T Consensus 19 ~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 19 TPGVGKTTLGKELASKSG 36 (180)
T ss_dssp STTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 579999999999998753
No 47
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=91.43 E-value=0.47 Score=38.91 Aligned_cols=37 Identities=22% Similarity=0.395 Sum_probs=26.6
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQ 41 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~ 41 (283)
||+||||+|..++.... ++ ..++-|+.....+....+
T Consensus 37 GGvGKTT~a~~LA~~la-~g--~~VlliD~D~~~~~~~~~ 73 (267)
T 3k9g_A 37 GGVGKSTSAIILATLLS-KN--NKVLLIDMDTQASITSYF 73 (267)
T ss_dssp SSSCHHHHHHHHHHHHT-TT--SCEEEEEECTTCHHHHHT
T ss_pred CCchHHHHHHHHHHHHH-CC--CCEEEEECCCCCCHHHHh
Confidence 89999999999998876 43 356677776554444433
No 48
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.42 E-value=0.092 Score=39.99 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
+.|+|||||++.+.....
T Consensus 12 ~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 12 PMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CTTSCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 469999999999988654
No 49
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.26 E-value=0.47 Score=40.37 Aligned_cols=48 Identities=23% Similarity=0.291 Sum_probs=33.9
Q ss_pred CCCcHHHHHHHHHhhhccCC---C-CCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 041028 2 GGIGKTTLAKEVARKAKNGK---L-FDQIVFTEVSQNPNIKKIQGEIAFKLGL 50 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~---~-Fd~~~wv~v~~~~~~~~l~~~i~~~l~~ 50 (283)
+|+||||||..++....... - =..++|++....++...+. ++++.++.
T Consensus 116 ~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~ 167 (324)
T 2z43_A 116 FGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGL 167 (324)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCC
Confidence 69999999999987643211 0 1468999998888877665 44566654
No 50
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.18 E-value=0.097 Score=41.16 Aligned_cols=17 Identities=24% Similarity=0.571 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHhhh
Q 041028 1 MGGIGKTTLAKEVARKA 17 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (283)
+.|+||||||+.+....
T Consensus 26 ~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 26 VSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 36999999999998875
No 51
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.15 E-value=0.1 Score=39.62 Aligned_cols=18 Identities=39% Similarity=0.536 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
+.|+||||+|+.+.....
T Consensus 15 ~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 15 FMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 579999999999998764
No 52
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.11 E-value=0.074 Score=40.71 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||+||+.+++...
T Consensus 52 ~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 52 PGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp GGGCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 59999999999998754
No 53
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.02 E-value=0.099 Score=38.87 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=14.4
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||+||+.+++..
T Consensus 33 ~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 33 PGTGRMTGARYLHQFG 48 (145)
T ss_dssp TTSSHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHhC
Confidence 6999999999999864
No 54
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=90.98 E-value=0.096 Score=40.63 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=14.1
Q ss_pred CCCCcHHHHHHHHHhh
Q 041028 1 MGGIGKTTLAKEVARK 16 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~ 16 (283)
+.|+|||||++.+...
T Consensus 17 ~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 17 HPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTSCHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhc
Confidence 4799999999999875
No 55
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.95 E-value=0.099 Score=41.65 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=15.7
Q ss_pred CCCcHHHHHHHHHhhhcc
Q 041028 2 GGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (283)
+|+||||||+.+++....
T Consensus 54 ~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 54 RGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp TTSCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhcC
Confidence 699999999999987654
No 56
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.82 E-value=0.12 Score=43.52 Aligned_cols=17 Identities=35% Similarity=0.339 Sum_probs=15.7
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||+||+.+++...
T Consensus 45 pGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 45 KGQGKSFQCELVFRKMG 61 (293)
T ss_dssp TTSCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 79999999999999875
No 57
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=90.77 E-value=0.27 Score=41.96 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=24.6
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKI 40 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l 40 (283)
||+||||+|..++......+ ..++-|+.....++...
T Consensus 23 GGvGKTTvA~~LA~~lA~~G--~rVLlvD~D~~~~l~~~ 59 (324)
T 3zq6_A 23 GGVGKTTISAATALWMARSG--KKTLVISTDPAHSLSDS 59 (324)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEECCSSCCHHHH
T ss_pred CCchHHHHHHHHHHHHHHCC--CcEEEEeCCCCcCHHHH
Confidence 89999999999887755432 24555666554454443
No 58
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.72 E-value=0.12 Score=39.91 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
+.|+||||+|+.+.....
T Consensus 12 ~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 12 PPGAGKGTQASRLAQELG 29 (186)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999987653
No 59
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.68 E-value=0.12 Score=39.28 Aligned_cols=18 Identities=39% Similarity=0.534 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
+.|+||||+|+.+.....
T Consensus 10 ~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 10 ARGCGMTTVGRELARALG 27 (173)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998654
No 60
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.67 E-value=0.13 Score=42.43 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=21.8
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQ 33 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~ 33 (283)
||+||||+|..++......+ ..++-|+...
T Consensus 10 GGvGKTT~a~nLA~~la~~G--~~VlliD~D~ 39 (269)
T 1cp2_A 10 GGIGKSTTTQNLTSGLHAMG--KTIMVVGCDP 39 (269)
T ss_dssp TTSSHHHHHHHHHHHHHTTT--CCEEEEEECT
T ss_pred CCCcHHHHHHHHHHHHHHCC--CcEEEEcCCC
Confidence 89999999999998765432 2456666653
No 61
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.58 E-value=0.12 Score=39.94 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHHhhhcc
Q 041028 1 MGGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (283)
++|+||||+|+.++.....
T Consensus 21 ~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 21 LPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 4799999999999987654
No 62
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.50 E-value=0.13 Score=40.52 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=16.7
Q ss_pred CCCCcHHHHHHHHHhhhccC
Q 041028 1 MGGIGKTTLAKEVARKAKNG 20 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (283)
++|+||||+|+.+.......
T Consensus 12 ~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 12 IDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CTTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHHhhc
Confidence 46999999999999876543
No 63
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.49 E-value=0.12 Score=39.77 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
++|+||||+|+.+.....
T Consensus 10 ~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 10 LPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 479999999999998754
No 64
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=90.47 E-value=0.12 Score=42.40 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
+.|+||||||+.++....
T Consensus 9 ~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 9 PTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHhcCC
Confidence 469999999999998754
No 65
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.45 E-value=0.13 Score=38.92 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
+.|+||||+|+.+.+...
T Consensus 8 ~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 8 FMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998654
No 66
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.38 E-value=0.13 Score=39.88 Aligned_cols=16 Identities=38% Similarity=0.586 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHhh
Q 041028 1 MGGIGKTTLAKEVARK 16 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~ 16 (283)
+.|+||||+|+.+...
T Consensus 18 ~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 18 TPGTGKTSMAEMIAAE 33 (184)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 5799999999999886
No 67
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.37 E-value=0.089 Score=40.46 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=11.5
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
+.|+||||+|+.+.....
T Consensus 13 ~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 13 PFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CC----CHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 479999999999987654
No 68
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.35 E-value=0.13 Score=39.78 Aligned_cols=18 Identities=28% Similarity=0.266 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
++|+||||+|+.+.....
T Consensus 11 ~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 11 GPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999987653
No 69
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.30 E-value=0.13 Score=40.51 Aligned_cols=17 Identities=41% Similarity=0.538 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHhhh
Q 041028 1 MGGIGKTTLAKEVARKA 17 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (283)
++|+|||||++.+....
T Consensus 20 ~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 20 PSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CTTSCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 47999999999998865
No 70
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.22 E-value=0.14 Score=41.80 Aligned_cols=18 Identities=44% Similarity=0.553 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
.||+|||||+..++....
T Consensus 22 kgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 22 TAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 389999999999987655
No 71
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.21 E-value=1.2 Score=37.52 Aligned_cols=74 Identities=19% Similarity=0.235 Sum_probs=41.2
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCC----CcCCHhhhHHhHHHHc--cCCcEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQ-NPNIKKIQGEIAFKLGLKF----DEESESGRTRSPWSRL--KKEKLQ 74 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~-~~~~~~l~~~i~~~l~~~~----~~~~~~~~~~~l~~~L--~~kr~L 74 (283)
+|+||||++..++......+ ..+.++.... .....+.++.+....+.+. ...+..+......+.+ .+..++
T Consensus 107 ~G~GKTT~~~~la~~~~~~g--~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~~~D~V 184 (297)
T 1j8m_F 107 QGTGKTTTAGKLAYFYKKKG--FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEII 184 (297)
T ss_dssp SCSSTTHHHHHHHHHHHHTT--CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHTTCSEE
T ss_pred CCCCHHHHHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 79999999999988765432 2455565542 2333444555566666542 1123444433333333 345788
Q ss_pred EEc
Q 041028 75 IIC 77 (283)
Q Consensus 75 lV~ 77 (283)
||+
T Consensus 185 iID 187 (297)
T 1j8m_F 185 IVD 187 (297)
T ss_dssp EEE
T ss_pred EEe
Confidence 883
No 72
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.18 E-value=0.29 Score=42.05 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=24.7
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKI 40 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l 40 (283)
||+||||+|..++......+ ..++-|+.....++...
T Consensus 25 GGvGKTt~a~~lA~~la~~g--~~vllid~D~~~~l~~~ 61 (334)
T 3iqw_A 25 GGVGKTTTSCSLAIQLAKVR--RSVLLLSTDPAHNLSDA 61 (334)
T ss_dssp TTSSHHHHHHHHHHHHTTSS--SCEEEEECCSSCHHHHH
T ss_pred CCccHHHHHHHHHHHHHhCC--CcEEEEECCCCCChhHH
Confidence 89999999999988765432 24566666654444433
No 73
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.11 E-value=0.14 Score=42.26 Aligned_cols=18 Identities=33% Similarity=0.660 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
++|+||||+|+.+.....
T Consensus 12 ~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 12 LPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 579999999999998743
No 74
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=90.04 E-value=0.14 Score=39.04 Aligned_cols=17 Identities=41% Similarity=0.653 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHhhh
Q 041028 1 MGGIGKTTLAKEVARKA 17 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (283)
+.|+||||||+.+....
T Consensus 16 ~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 16 VSGSGKSAVASEVAHQL 32 (175)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 46999999999998764
No 75
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.04 E-value=0.25 Score=41.24 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=21.6
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQ 33 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~ 33 (283)
||+||||+|..++......+ ..++-|+...
T Consensus 11 GGvGKTT~a~nLA~~La~~G--~rVlliD~D~ 40 (289)
T 2afh_E 11 GGIGKSTTTQNLVAALAEMG--KKVMIVGCDP 40 (289)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEEECS
T ss_pred CcCcHHHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 89999999999988765432 2456666653
No 76
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=89.97 E-value=0.6 Score=40.13 Aligned_cols=48 Identities=19% Similarity=0.240 Sum_probs=33.7
Q ss_pred CCCcHHHHHHHHHhhhccCC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 041028 2 GGIGKTTLAKEVARKAKNGK----LFDQIVFTEVSQNPNIKKIQGEIAFKLGL 50 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~----~Fd~~~wv~v~~~~~~~~l~~~i~~~l~~ 50 (283)
+|+||||||..++....... .=..++|++....++...+. +++..++.
T Consensus 131 ~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~ 182 (343)
T 1v5w_A 131 FRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNV 182 (343)
T ss_dssp TTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 69999999999987643211 12478999998888877654 44556654
No 77
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=89.95 E-value=0.16 Score=42.71 Aligned_cols=18 Identities=39% Similarity=0.429 Sum_probs=15.4
Q ss_pred CCCcHHHHHHHHHhhhcc
Q 041028 2 GGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (283)
+|+|||+||+.+++....
T Consensus 76 ~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 76 PGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 699999999998887644
No 78
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=89.92 E-value=0.17 Score=40.88 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=22.0
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQ 33 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~ 33 (283)
||+||||+|..++........ ..++-|+...
T Consensus 14 GGvGKTt~a~~LA~~la~~~g-~~VlliD~D~ 44 (245)
T 3ea0_A 14 GGDGGSCIAANFAFALSQEPD-IHVLAVDISL 44 (245)
T ss_dssp TTSSHHHHHHHHHHHHTTSTT-CCEEEEECCT
T ss_pred CCcchHHHHHHHHHHHHhCcC-CCEEEEECCC
Confidence 899999999999987654301 2456666653
No 79
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.91 E-value=0.15 Score=39.99 Aligned_cols=18 Identities=39% Similarity=0.350 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
++|+||||+|+.+.....
T Consensus 28 ~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 28 PPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999988653
No 80
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.90 E-value=0.3 Score=41.06 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=22.1
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQN 34 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~ 34 (283)
||+||||+|..++......+. .++-|+....
T Consensus 50 GGvGKTT~a~nLA~~La~~G~--~VlliD~D~~ 80 (307)
T 3end_A 50 GGIGKSTTSSNLSAAFSILGK--RVLQIGCDPK 80 (307)
T ss_dssp TTSSHHHHHHHHHHHHHHTTC--CEEEEEESSS
T ss_pred CCccHHHHHHHHHHHHHHCCC--eEEEEeCCCC
Confidence 899999999998887654322 4566666543
No 81
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=89.89 E-value=0.31 Score=39.62 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=22.0
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQ 33 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~ 33 (283)
||+||||+|..++......+. .++-|+...
T Consensus 12 gGvGKTt~a~~LA~~la~~g~--~VlliD~D~ 41 (260)
T 3q9l_A 12 GGVGKTTSSAAIATGLAQKGK--KTVVIDFAI 41 (260)
T ss_dssp TTSSHHHHHHHHHHHHHHTTC--CEEEEECCC
T ss_pred CCCcHHHHHHHHHHHHHhCCC--cEEEEECCC
Confidence 899999999999887654322 456666664
No 82
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.84 E-value=0.15 Score=39.52 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
+.|+||||+|+.+.....
T Consensus 17 ~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 17 GPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999988653
No 83
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=89.84 E-value=0.28 Score=42.39 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=20.3
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQ 33 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~ 33 (283)
||+||||+|..++......+. .++-|+...
T Consensus 35 GGvGKTTvA~~LA~~lA~~G~--rVLlvD~D~ 64 (349)
T 3ug7_A 35 GGVGKTTMSAATGVYLAEKGL--KVVIVSTDP 64 (349)
T ss_dssp SSTTHHHHHHHHHHHHHHSSC--CEEEEECCT
T ss_pred CCccHHHHHHHHHHHHHHCCC--eEEEEeCCC
Confidence 899999999998877544321 345555443
No 84
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=89.79 E-value=0.15 Score=40.00 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
+.|.||||||+.+.....
T Consensus 33 ~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 33 LSGSGKSTLACALNQMLY 50 (200)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 469999999999998765
No 85
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=89.75 E-value=0.31 Score=40.68 Aligned_cols=38 Identities=18% Similarity=0.341 Sum_probs=26.1
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCC-CCCHHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQ-NPNIKKIQ 41 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~-~~~~~~l~ 41 (283)
||+||||+|..++......+ ..++-|+... ..+....+
T Consensus 14 GGvGKTT~a~nLA~~La~~G--~~VlliD~D~~q~~l~~~l 52 (286)
T 2xj4_A 14 GGAGKSTIAVHLVTALLYGG--AKVAVIDLDLRQRTSARFF 52 (286)
T ss_dssp SCTTHHHHHHHHHHHHHHTT--CCEEEEECCTTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC--CcEEEEECCCCCCCHHHHh
Confidence 89999999999988765432 2456677765 55554443
No 86
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.72 E-value=0.14 Score=42.45 Aligned_cols=17 Identities=53% Similarity=0.651 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||+||+.+++...
T Consensus 60 ~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 60 PGTGKTLLAKAVATETN 76 (285)
T ss_dssp SSSSHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHhC
Confidence 69999999999998754
No 87
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.63 E-value=0.16 Score=40.49 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
++|+||||+|+.++....
T Consensus 12 ~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 12 PPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 479999999999988654
No 88
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.62 E-value=0.16 Score=39.47 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
++|+||||+|+.+.....
T Consensus 20 ~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 20 GPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998653
No 89
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.54 E-value=0.15 Score=41.58 Aligned_cols=17 Identities=59% Similarity=0.690 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||+||+.+++...
T Consensus 48 ~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 48 PGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 69999999999999764
No 90
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=89.43 E-value=0.17 Score=39.71 Aligned_cols=17 Identities=47% Similarity=0.665 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHhhh
Q 041028 1 MGGIGKTTLAKEVARKA 17 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (283)
+.|+|||||++.+....
T Consensus 37 ~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 37 VSGSGKTTIAHGVADET 53 (200)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 36999999999998765
No 91
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=89.39 E-value=0.18 Score=41.42 Aligned_cols=18 Identities=56% Similarity=0.589 Sum_probs=15.7
Q ss_pred CCCcHHHHHHHHHhhhcc
Q 041028 2 GGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (283)
+|+|||+||+.+++....
T Consensus 53 ~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 53 PGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp SCSSHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHhCC
Confidence 699999999999997653
No 92
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=89.37 E-value=0.16 Score=41.72 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=21.9
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQN 34 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~ 34 (283)
||+||||+|..++......+ ..++-|+....
T Consensus 28 GGvGKTT~a~nLA~~la~~G--~~VlliD~D~~ 58 (262)
T 2ph1_A 28 GGVGKSTVTALLAVHYARQG--KKVGILDADFL 58 (262)
T ss_dssp SCTTHHHHHHHHHHHHHHTT--CCEEEEECCSS
T ss_pred CCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 89999999999988765432 23566666543
No 93
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=89.34 E-value=0.37 Score=38.63 Aligned_cols=30 Identities=20% Similarity=0.343 Sum_probs=22.4
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQ 33 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~ 33 (283)
||+||||+|..++......+ ..++.|+...
T Consensus 12 gGvGKTt~a~~LA~~la~~g--~~VlliD~D~ 41 (237)
T 1g3q_A 12 GGTGKTTVTANLSVALGDRG--RKVLAVDGDL 41 (237)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEECCT
T ss_pred CCCCHHHHHHHHHHHHHhcC--CeEEEEeCCC
Confidence 89999999999998765432 2466677654
No 94
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.30 E-value=0.17 Score=40.51 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHhhh
Q 041028 1 MGGIGKTTLAKEVARKA 17 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (283)
++|+||||+|+.+....
T Consensus 15 ~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 15 APGSGKGTVSSRITTHF 31 (227)
T ss_dssp CTTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 47999999999998865
No 95
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.29 E-value=0.18 Score=39.05 Aligned_cols=18 Identities=44% Similarity=0.506 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
+.|+||||+|+.+.+...
T Consensus 8 ~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 8 IDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp STTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 469999999999998763
No 96
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.27 E-value=0.17 Score=40.33 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
++|+||||+|+.++....
T Consensus 13 ~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 13 APASGKGTQCELIKTKYQ 30 (222)
T ss_dssp STTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998764
No 97
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.18 E-value=0.56 Score=36.25 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
.|+||||+|+.+.+...
T Consensus 9 ~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 9 DGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 69999999999998764
No 98
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=89.08 E-value=0.17 Score=41.34 Aligned_cols=17 Identities=59% Similarity=0.712 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+||||||+.+++...
T Consensus 54 ~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 54 PGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp TTSCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcC
Confidence 69999999999998764
No 99
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.03 E-value=0.19 Score=39.86 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
++|+||||+|+.+.....
T Consensus 8 ~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 8 LPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp STTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 469999999999987653
No 100
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=88.98 E-value=0.19 Score=39.59 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=18.4
Q ss_pred CCCCcHHHHHHHHHhhhccCCCCCe
Q 041028 1 MGGIGKTTLAKEVARKAKNGKLFDQ 25 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~~~Fd~ 25 (283)
+.|+||||+|+.+....... +++.
T Consensus 18 ~~GsGKST~~~~L~~~l~~~-~~~~ 41 (212)
T 2wwf_A 18 LDRSGKSTQSKLLVEYLKNN-NVEV 41 (212)
T ss_dssp STTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 36999999999999876543 3455
No 101
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.91 E-value=0.19 Score=38.71 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
+.|+||||+|+.+.....
T Consensus 14 ~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 14 GPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp STTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999988653
No 102
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=88.90 E-value=0.19 Score=38.97 Aligned_cols=15 Identities=40% Similarity=0.623 Sum_probs=13.3
Q ss_pred CCCCcHHHHHHHHHh
Q 041028 1 MGGIGKTTLAKEVAR 15 (283)
Q Consensus 1 mgGiGKTtLA~~v~~ 15 (283)
..|+|||||++.+..
T Consensus 10 ~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 10 PAGVGKSTTCKRLAA 24 (189)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHhc
Confidence 369999999999976
No 103
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=88.89 E-value=0.39 Score=41.02 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=20.9
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQ 33 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~ 33 (283)
||+||||+|..++......+ + .++-|+...
T Consensus 28 GGvGKTTva~~LA~~lA~~G-~-rVllvD~D~ 57 (329)
T 2woo_A 28 GGVGKTTTSCSLAIQMSKVR-S-SVLLISTDP 57 (329)
T ss_dssp SSSSHHHHHHHHHHHHHTSS-S-CEEEEECCT
T ss_pred CCCcHHHHHHHHHHHHHHCC-C-eEEEEECCC
Confidence 89999999999988765432 2 345555543
No 104
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=88.79 E-value=0.19 Score=42.05 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=21.6
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQN 34 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~ 34 (283)
||+||||+|..++......+ ..++-|+....
T Consensus 46 GGvGKTT~a~nLA~~la~~G--~rVlliD~D~q 76 (298)
T 2oze_A 46 GGVGKSKLSTMFAYLTDKLN--LKVLMIDKDLQ 76 (298)
T ss_dssp SSSSHHHHHHHHHHHHHHTT--CCEEEEEECTT
T ss_pred CCchHHHHHHHHHHHHHhCC--CeEEEEeCCCC
Confidence 89999999999988765332 23555665543
No 105
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=88.77 E-value=0.19 Score=41.56 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||+||+.+++...
T Consensus 73 ~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 73 PHSGKTALAAKIAEESN 89 (272)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHhC
Confidence 69999999999999753
No 106
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.76 E-value=0.2 Score=39.86 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
++|+||||+|+.+.....
T Consensus 13 ~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 13 APGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998763
No 107
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=88.71 E-value=1.8 Score=38.53 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=40.3
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeC-CCCCHHHHHHHHHHHhCCCCC----cCCHhhhHH-hHHHHc-cCCcEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVS-QNPNIKKIQGEIAFKLGLKFD----EESESGRTR-SPWSRL-KKEKLQ 74 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~-~~~~~~~l~~~i~~~l~~~~~----~~~~~~~~~-~l~~~L-~~kr~L 74 (283)
+|+||||++..++......+ . .++.+... ..+...+-+......++.+.. ..+...... .+.... .+..++
T Consensus 106 ~GsGKTTt~~kLA~~l~~~G-~-kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~~~~Dvv 183 (433)
T 3kl4_A 106 QGSGKTTTAGKLAYFYKKRG-Y-KVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMDII 183 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHTT-C-CEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTTTTTCSEE
T ss_pred CCCCHHHHHHHHHHHHHHcC-C-eEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHHhcCCCEE
Confidence 69999999999988765432 2 34444443 222334455556666666422 123333332 333332 245788
Q ss_pred EEc
Q 041028 75 IIC 77 (283)
Q Consensus 75 lV~ 77 (283)
||+
T Consensus 184 IID 186 (433)
T 3kl4_A 184 IVD 186 (433)
T ss_dssp EEE
T ss_pred EEE
Confidence 883
No 108
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=88.70 E-value=0.2 Score=39.20 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHhhh
Q 041028 1 MGGIGKTTLAKEVARKA 17 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (283)
+.|+||||+|+.+.+..
T Consensus 23 ~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 23 GPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 46999999999998764
No 109
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=88.63 E-value=0.21 Score=39.80 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=15.9
Q ss_pred CCCcHHHHHHHHHhhhccC
Q 041028 2 GGIGKTTLAKEVARKAKNG 20 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (283)
||+||||+|..++.....+
T Consensus 11 gGvGKTt~a~nLa~~la~~ 29 (224)
T 1byi_A 11 TEVGKTVASCALLQAAKAA 29 (224)
T ss_dssp TTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHC
Confidence 8999999999998876543
No 110
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.60 E-value=0.21 Score=39.64 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHhhh
Q 041028 1 MGGIGKTTLAKEVARKA 17 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (283)
.+|+||||+|+.+....
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 8 LPGAGKGTQGERIVEKY 24 (216)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 46999999999998765
No 111
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.59 E-value=0.21 Score=39.40 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=18.3
Q ss_pred CCCCcHHHHHHHHHhhhccCCCCCe
Q 041028 1 MGGIGKTTLAKEVARKAKNGKLFDQ 25 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~~~Fd~ 25 (283)
+.|+||||+|+.+....... .++.
T Consensus 17 ~~GsGKsT~~~~L~~~l~~~-~~~v 40 (215)
T 1nn5_A 17 VDRAGKSTQSRKLVEALCAA-GHRA 40 (215)
T ss_dssp STTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 46999999999999876543 3454
No 112
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=88.59 E-value=0.98 Score=39.73 Aligned_cols=48 Identities=17% Similarity=0.161 Sum_probs=31.6
Q ss_pred CCCcHHHHHHHHHhhhccC----CCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 041028 2 GGIGKTTLAKEVARKAKNG----KLFDQIVFTEVSQNPNIKKIQGEIAFKLGL 50 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~----~~Fd~~~wv~v~~~~~~~~l~~~i~~~l~~ 50 (283)
+|+|||||+..++-..... ..-..++|++....++...+ ..+++.++.
T Consensus 187 sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl 238 (400)
T 3lda_A 187 FRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGL 238 (400)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTC
T ss_pred CCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCC
Confidence 6999999999876432211 01246889988777666554 446677765
No 113
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=88.56 E-value=0.33 Score=42.06 Aligned_cols=37 Identities=27% Similarity=0.485 Sum_probs=25.7
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKI 40 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l 40 (283)
||+||||+|..++......+ ..++-|+.....+....
T Consensus 11 GGvGKTT~a~nLA~~LA~~G--~rVLlID~D~q~~~~~~ 47 (361)
T 3pg5_A 11 GGVGKTTLSTNVAHYFALQG--KRVLYVDCDPQCNATQL 47 (361)
T ss_dssp CCHHHHHHHHHHHHHHHHTT--CCEEEEECCTTCTTHHH
T ss_pred CCCcHHHHHHHHHHHHHhCC--CcEEEEEcCCCCChhhh
Confidence 89999999999988765332 25677777755444433
No 114
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=88.51 E-value=0.21 Score=39.19 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHHh
Q 041028 1 MGGIGKTTLAKEVAR 15 (283)
Q Consensus 1 mgGiGKTtLA~~v~~ 15 (283)
+.|+||||+++.+..
T Consensus 9 ~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 9 NIGCGKSTVAQMFRE 23 (204)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHH
Confidence 369999999999987
No 115
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.50 E-value=0.19 Score=43.11 Aligned_cols=17 Identities=47% Similarity=0.661 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+||||||+.+++...
T Consensus 60 ~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 60 PGLGKTTLAHIIASELQ 76 (334)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHhC
Confidence 69999999999999763
No 116
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=88.44 E-value=0.31 Score=42.39 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=23.1
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPN 36 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~ 36 (283)
||+||||+|..++......+ ..++-|+.....+
T Consensus 153 GGvGKTT~a~nLA~~La~~g--~rVlliD~D~~~~ 185 (373)
T 3fkq_A 153 GGVGTSTVAAACAIAHANMG--KKVFYLNIEQCGT 185 (373)
T ss_dssp TTSSHHHHHHHHHHHHHHHT--CCEEEEECCTTCC
T ss_pred CCChHHHHHHHHHHHHHhCC--CCEEEEECCCCCC
Confidence 89999999999887754331 2467777663333
No 117
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=88.43 E-value=0.56 Score=40.54 Aligned_cols=38 Identities=24% Similarity=0.363 Sum_probs=25.7
Q ss_pred CCCcHHHHHHHHHhhhc--cCCCCCeEEEEEeCCCCCHHHHH
Q 041028 2 GGIGKTTLAKEVARKAK--NGKLFDQIVFTEVSQNPNIKKIQ 41 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~--~~~~Fd~~~wv~v~~~~~~~~l~ 41 (283)
||+||||+|..++.... ..+ ..++-|+.....++..++
T Consensus 27 GGvGKTTvaanLA~~lA~~~~G--~rVLLvD~D~~~~l~~~l 66 (354)
T 2woj_A 27 GGVGKTTSSCSIAIQMALSQPN--KQFLLISTDPAHNLSDAF 66 (354)
T ss_dssp TTSSHHHHHHHHHHHHHHHCTT--SCEEEEECCSSCCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhcCC--CeEEEEECCCCCCHHHHh
Confidence 89999999999887765 332 245666665555555443
No 118
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=88.39 E-value=0.2 Score=42.54 Aligned_cols=18 Identities=39% Similarity=0.510 Sum_probs=15.7
Q ss_pred CCCcHHHHHHHHHhhhcc
Q 041028 2 GGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (283)
+|+||||||+.+++....
T Consensus 46 ~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 46 VGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SSSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 699999999999997643
No 119
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=88.38 E-value=0.18 Score=42.33 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHhhh
Q 041028 1 MGGIGKTTLAKEVARKA 17 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (283)
++|+||||+|+.+....
T Consensus 41 ~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 41 QPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CTTSCTHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998754
No 120
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=88.38 E-value=0.45 Score=41.08 Aligned_cols=35 Identities=29% Similarity=0.479 Sum_probs=22.8
Q ss_pred CCCcHHHHHHHHHhhhc--cCCCCCeEEEEEeCCCCCHH
Q 041028 2 GGIGKTTLAKEVARKAK--NGKLFDQIVFTEVSQNPNIK 38 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~--~~~~Fd~~~wv~v~~~~~~~ 38 (283)
||+||||+|..++.... ..+ ..++-|+.....++.
T Consensus 27 GGvGKTt~a~~lA~~la~~~~g--~~vllid~D~~~~l~ 63 (348)
T 3io3_A 27 GGVGKTTTSSSVAVQLALAQPN--EQFLLISTDPAHNLS 63 (348)
T ss_dssp TTSSHHHHHHHHHHHHHHHCTT--SCEEEEECCSSCHHH
T ss_pred CCCcHHHHHHHHHHHHHHhcCC--CeEEEEECCCCCChH
Confidence 89999999999887655 321 235556655443333
No 121
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.34 E-value=0.22 Score=39.48 Aligned_cols=17 Identities=29% Similarity=0.139 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHhhh
Q 041028 1 MGGIGKTTLAKEVARKA 17 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (283)
++|+||||+|+.+....
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 8 APVAGKGTQAQFIMEKY 24 (214)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998865
No 122
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=88.34 E-value=0.79 Score=36.27 Aligned_cols=47 Identities=26% Similarity=0.268 Sum_probs=28.4
Q ss_pred CCCcHHHHHHHHHhhhccC---C-CCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 041028 2 GGIGKTTLAKEVARKAKNG---K-LFDQIVFTEVSQNPNIKKIQGEIAFKLG 49 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~---~-~Fd~~~wv~v~~~~~~~~l~~~i~~~l~ 49 (283)
.|+|||||++.++...... . .-..++|+.-...+.... ...+.+..+
T Consensus 34 nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~ 84 (231)
T 4a74_A 34 FGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRG 84 (231)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcC
Confidence 5999999999998743321 1 124678887655444333 334445444
No 123
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.29 E-value=0.21 Score=40.73 Aligned_cols=17 Identities=53% Similarity=0.790 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+||||||+.+++...
T Consensus 58 ~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 58 PGVGKTHLARAVAGEAR 74 (254)
T ss_dssp TTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 69999999999998764
No 124
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.23 E-value=0.2 Score=42.20 Aligned_cols=38 Identities=26% Similarity=0.276 Sum_probs=23.2
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKK 39 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~ 39 (283)
+|+||||+|+.+++.......-...++++.+.......
T Consensus 51 ~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 88 (323)
T 1sxj_B 51 PGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDV 88 (323)
T ss_dssp TTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHH
T ss_pred CCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHH
Confidence 69999999999998754321112345555554444433
No 125
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=88.21 E-value=2.4 Score=37.65 Aligned_cols=75 Identities=15% Similarity=0.177 Sum_probs=40.3
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCC----cCCHhhhHHhHHHHc--cCCcEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQ-NPNIKKIQGEIAFKLGLKFD----EESESGRTRSPWSRL--KKEKLQ 74 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~-~~~~~~l~~~i~~~l~~~~~----~~~~~~~~~~l~~~L--~~kr~L 74 (283)
+|+||||++..++.....+... .++-|+... .....+.+.......+.+.- ..+..+.....-..+ .+-.++
T Consensus 109 ~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~~~~D~V 187 (433)
T 2xxa_A 109 QGAGKTTSVGKLGKFLREKHKK-KVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVL 187 (433)
T ss_dssp TTSSHHHHHHHHHHHHHHTSCC-CEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHHTTCSEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCC-eEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 7999999999999876644112 345555542 33444444444555554311 123333322222233 345788
Q ss_pred EEc
Q 041028 75 IIC 77 (283)
Q Consensus 75 lV~ 77 (283)
||+
T Consensus 188 IID 190 (433)
T 2xxa_A 188 LVD 190 (433)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
No 126
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=88.20 E-value=2 Score=35.98 Aligned_cols=74 Identities=19% Similarity=0.144 Sum_probs=39.7
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----cCCHhhhH-HhHHHHc-cCCcEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNP-NIKKIQGEIAFKLGLKFD----EESESGRT-RSPWSRL-KKEKLQ 74 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~-~~l~~~L-~~kr~L 74 (283)
+|+||||++..++......+ ..+.++...-.. .....+..+....+.+.- ..+..+.. ..+.... .+..++
T Consensus 107 ~G~GKTT~~~~la~~~~~~~--~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~~~~D~v 184 (295)
T 1ls1_A 107 QGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLI 184 (295)
T ss_dssp TTTTHHHHHHHHHHHHHHTT--CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHTCCEE
T ss_pred CCCCHHHHHHHHHHHHHHcC--CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 79999999999988765431 234555443221 122223445555555421 12333333 2444443 566888
Q ss_pred EEc
Q 041028 75 IIC 77 (283)
Q Consensus 75 lV~ 77 (283)
||+
T Consensus 185 iiD 187 (295)
T 1ls1_A 185 LVD 187 (295)
T ss_dssp EEE
T ss_pred EEe
Confidence 883
No 127
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=88.18 E-value=0.14 Score=38.39 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQ 33 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~ 33 (283)
.|+|||||++.+++.....+ + .+++++...
T Consensus 45 ~G~GKTtL~~~i~~~~~~~g-~-~~~~~~~~~ 74 (149)
T 2kjq_A 45 EGAGKSHLLQAWVAQALEAG-K-NAAYIDAAS 74 (149)
T ss_dssp STTTTCHHHHHHHHHHHTTT-C-CEEEEETTT
T ss_pred CCCCHHHHHHHHHHHHHhcC-C-cEEEEcHHH
Confidence 59999999999999765321 2 256666543
No 128
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.17 E-value=0.23 Score=40.02 Aligned_cols=18 Identities=33% Similarity=0.316 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
+.|+||||+|+.+.+...
T Consensus 24 ~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 24 PPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998764
No 129
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=88.12 E-value=0.48 Score=38.68 Aligned_cols=30 Identities=20% Similarity=0.353 Sum_probs=22.1
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQ 33 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~ 33 (283)
||+||||+|..++......+ ..++-|+...
T Consensus 12 gGvGKTt~a~~LA~~la~~g--~~VlliD~D~ 41 (263)
T 1hyq_A 12 GGTGKTTITANLGVALAQLG--HDVTIVDADI 41 (263)
T ss_dssp SCSCHHHHHHHHHHHHHHTT--CCEEEEECCC
T ss_pred CCCCHHHHHHHHHHHHHhCC--CcEEEEECCC
Confidence 89999999999988765432 2456677654
No 130
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.08 E-value=1.3 Score=35.80 Aligned_cols=18 Identities=33% Similarity=0.285 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
++|+||||+|+.+.....
T Consensus 16 ~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 16 APGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998764
No 131
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.07 E-value=0.76 Score=38.34 Aligned_cols=43 Identities=12% Similarity=0.265 Sum_probs=27.8
Q ss_pred CCCcHHHHHHHHHhhhccCCCCC-eEEEEEeCCCCCHHHHHHHHHHHh
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFD-QIVFTEVSQNPNIKKIQGEIAFKL 48 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd-~~~wv~v~~~~~~~~l~~~i~~~l 48 (283)
+|+|||||++.++...... -. .++|++... +..++...++...
T Consensus 44 ~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~--~~~~~~~r~~~~~ 87 (296)
T 1cr0_A 44 SGMGKSTFVRQQALQWGTA--MGKKVGLAMLEE--SVEETAEDLIGLH 87 (296)
T ss_dssp TTSSHHHHHHHHHHHHHHT--SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcC--CHHHHHHHHHHHH
Confidence 6999999999998876543 22 466766543 4455555555443
No 132
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=88.03 E-value=0.22 Score=41.61 Aligned_cols=17 Identities=47% Similarity=0.583 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+||||||+.+++...
T Consensus 63 ~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 63 PGNGKTLLARAVATECS 79 (297)
T ss_dssp SSSCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 69999999999998754
No 133
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.01 E-value=0.23 Score=38.81 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHhhh
Q 041028 1 MGGIGKTTLAKEVARKA 17 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (283)
+.|+||||+++.+....
T Consensus 12 ~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 12 LDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CTTSSHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 46999999999998865
No 134
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=87.96 E-value=0.32 Score=41.19 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=20.0
Q ss_pred CCCcHHHHHHHHHhhhc-cCCCCCeEEEEEe
Q 041028 2 GGIGKTTLAKEVARKAK-NGKLFDQIVFTEV 31 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~-~~~~Fd~~~wv~v 31 (283)
+|+|||+||..+++... ..+ + .+.++++
T Consensus 161 ~GtGKT~La~aia~~~~~~~g-~-~v~~~~~ 189 (308)
T 2qgz_A 161 MGIGKSYLLAAMAHELSEKKG-V-STTLLHF 189 (308)
T ss_dssp TTSSHHHHHHHHHHHHHHHSC-C-CEEEEEH
T ss_pred CCCCHHHHHHHHHHHHHHhcC-C-cEEEEEH
Confidence 59999999999999765 432 2 3445544
No 135
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=87.96 E-value=0.2 Score=42.60 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQ 33 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~ 33 (283)
|||||||.|..++--....+. .++-|....
T Consensus 57 GGVGKTTtavNLA~aLA~~Gk--kVllID~Dp 86 (314)
T 3fwy_A 57 GGIGKSTTSSNLSAAFSILGK--RVLQIGCDP 86 (314)
T ss_dssp TTSSHHHHHHHHHHHHHHTTC--CEEEEEESS
T ss_pred CccCHHHHHHHHHHHHHHCCC--eEEEEecCC
Confidence 899999999988776554322 456666664
No 136
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.93 E-value=0.25 Score=39.62 Aligned_cols=17 Identities=35% Similarity=0.288 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHhhh
Q 041028 1 MGGIGKTTLAKEVARKA 17 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (283)
++|+||||+|+.+....
T Consensus 8 ~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 8 PNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998865
No 137
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=87.85 E-value=0.23 Score=38.27 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|+|||||++.+....
T Consensus 14 sGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 14 HGVGRRHIKNTLITKH 29 (180)
T ss_dssp TTSSHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHhhC
Confidence 6999999999998764
No 138
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=87.84 E-value=0.23 Score=41.84 Aligned_cols=17 Identities=47% Similarity=0.657 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||+||+.+++...
T Consensus 58 ~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 58 PGCGKTLLAKAIANECQ 74 (301)
T ss_dssp SSSSHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHhC
Confidence 69999999999998764
No 139
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=87.75 E-value=0.24 Score=41.14 Aligned_cols=17 Identities=53% Similarity=0.624 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+||||||+.++....
T Consensus 53 ~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 53 PGCGKTLLAKAVANESG 69 (274)
T ss_dssp TTSCHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHcC
Confidence 69999999999998654
No 140
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=87.58 E-value=0.26 Score=38.96 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
+.|+||||+|+.+.....
T Consensus 33 ~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 33 LSASGKSTLAVELEHQLV 50 (211)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 479999999999988754
No 141
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=87.55 E-value=0.94 Score=38.87 Aligned_cols=43 Identities=16% Similarity=0.141 Sum_probs=30.6
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIAFKL 48 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~~~l 48 (283)
+|+||||||..++...... =..++|++.. .+..++..+++...
T Consensus 55 pG~GKTt~al~ia~~~a~~--g~~Vl~fSlE--ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 55 PSMGKTSLMMNMVLSALND--DRGVAVFSLE--MSAEQLALRALSDL 97 (338)
T ss_dssp TTSCHHHHHHHHHHHHHHT--TCEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHc--CCeEEEEeCC--CCHHHHHHHHHHHh
Confidence 6999999999998876542 1356777664 45677777776543
No 142
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=87.55 E-value=0.26 Score=42.52 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=16.0
Q ss_pred CCCcHHHHHHHHHhhhcc
Q 041028 2 GGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (283)
+|+|||+||+.+++....
T Consensus 79 pGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 79 PGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TTSSHHHHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHhcc
Confidence 699999999999998753
No 143
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=87.49 E-value=0.25 Score=38.21 Aligned_cols=18 Identities=39% Similarity=0.671 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHhhhcc
Q 041028 2 GGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (283)
.|+|||||++.++....+
T Consensus 9 nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 9 PGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp TTSSHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHhCC
Confidence 599999999999987653
No 144
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=87.46 E-value=0.27 Score=37.71 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
+.|+||||+++.+.....
T Consensus 13 ~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 13 LSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 469999999999988653
No 145
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=87.45 E-value=0.32 Score=39.77 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=21.6
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQ 33 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~ 33 (283)
||+||||+|..++......+ ..++-|+...
T Consensus 16 GGvGKTt~a~~LA~~la~~g--~~VlliD~D~ 45 (257)
T 1wcv_1 16 GGVGKTTTAINLAAYLARLG--KRVLLVDLDP 45 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHTT--CCEEEEECCT
T ss_pred CCchHHHHHHHHHHHHHHCC--CCEEEEECCC
Confidence 89999999999988765432 2455666554
No 146
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.42 E-value=0.83 Score=37.05 Aligned_cols=43 Identities=19% Similarity=0.194 Sum_probs=26.4
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIA 45 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~ 45 (283)
.|+||||+++.+....... .+..+....-.....+.+.+++++
T Consensus 36 ~GsGKsT~~~~l~~~l~~~-~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 36 EGAGKSTAIQVVVETLQQN-GIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp TTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhc-CCCeeeeecCCCCCHHHHHHHHHH
Confidence 6999999999999887653 355344443222223344445544
No 147
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.32 E-value=0.46 Score=38.12 Aligned_cols=44 Identities=11% Similarity=0.255 Sum_probs=26.9
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIAFKLGL 50 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~~~l~~ 50 (283)
+|+||||||..++...... =..++|++.... ..++...+ ..++.
T Consensus 32 ~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~~--~~~~~~~~-~~~g~ 75 (247)
T 2dr3_A 32 PGTGKTIFSQQFLWNGLKM--GEPGIYVALEEH--PVQVRQNM-AQFGW 75 (247)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEESSSC--HHHHHHHH-HTTTC
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEEccCC--HHHHHHHH-HHcCC
Confidence 6999999999887654322 235778776543 34444433 34443
No 148
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=87.30 E-value=0.25 Score=42.06 Aligned_cols=16 Identities=56% Similarity=0.679 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||+||+.+++..
T Consensus 54 pGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 54 PGTGKSYLAKAVATEA 69 (322)
T ss_dssp SSSCHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHc
Confidence 6999999999999875
No 149
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.23 E-value=0.9 Score=36.17 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=27.8
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIAF 46 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~~ 46 (283)
.|+||||+++.+.+..... .+..+.+..-.....+.+.+++++.
T Consensus 12 ~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 12 EGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp TTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 6999999999999887654 3433333332233345566666665
No 150
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=87.21 E-value=0.26 Score=41.91 Aligned_cols=17 Identities=53% Similarity=0.655 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||+||+.+++...
T Consensus 60 pGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 60 PGTGKSYLAKAVATEAN 76 (322)
T ss_dssp SSSCHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHC
Confidence 69999999999999754
No 151
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=87.07 E-value=0.3 Score=38.91 Aligned_cols=18 Identities=39% Similarity=0.501 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
..|+||||+|+.+.....
T Consensus 13 ~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 13 PSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 369999999999988653
No 152
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=87.03 E-value=0.11 Score=38.60 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||++|+.+++..
T Consensus 36 ~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 36 AGSPFETVARYFHKNG 51 (143)
T ss_dssp TTCCHHHHHGGGCCTT
T ss_pred CCccHHHHHHHHHHhC
Confidence 6999999999998754
No 153
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=87.02 E-value=0.28 Score=38.34 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|+|||||++.+....
T Consensus 15 ~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 15 SGVGKGTVRKRIFEDP 30 (207)
T ss_dssp TTSCHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHhh
Confidence 6999999999998765
No 154
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=86.95 E-value=0.3 Score=39.65 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
..|+|||||++.++....
T Consensus 35 ~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 35 PPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 369999999999997654
No 155
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=86.94 E-value=0.25 Score=39.84 Aligned_cols=71 Identities=14% Similarity=-0.034 Sum_probs=37.5
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCc---CCHhhhHHhHHHHccCC--cEEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIAFKLGLKFDE---ESESGRTRSPWSRLKKE--KLQII 76 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~l~~~L~~k--r~LlV 76 (283)
.|+||||++..+.++.... -..++.+....... ....+++.+|..... ....+..+.+.+.+.+. .+++|
T Consensus 21 mGsGKTT~ll~~~~r~~~~--g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvViI 95 (223)
T 2b8t_A 21 MFAGKTAELIRRLHRLEYA--DVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIGI 95 (223)
T ss_dssp TTSCHHHHHHHHHHHHHHT--TCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEEE
T ss_pred CCCcHHHHHHHHHHHHHhc--CCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEEEE
Confidence 4999999999998887644 22344444333211 223455556654332 12333444555544333 46666
Q ss_pred c
Q 041028 77 C 77 (283)
Q Consensus 77 ~ 77 (283)
+
T Consensus 96 D 96 (223)
T 2b8t_A 96 D 96 (223)
T ss_dssp C
T ss_pred e
Confidence 3
No 156
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=86.76 E-value=0.65 Score=37.38 Aligned_cols=19 Identities=37% Similarity=0.426 Sum_probs=16.4
Q ss_pred CCCCcHHHHHHHHHhhhcc
Q 041028 1 MGGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (283)
..|+||||+++.+......
T Consensus 34 ~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 34 PEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CTTSCHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 3699999999999998764
No 157
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=86.72 E-value=1.8 Score=38.54 Aligned_cols=74 Identities=14% Similarity=0.078 Sum_probs=40.5
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCC----cCCHhhhH-HhHHHHcc-CCcEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQ-NPNIKKIQGEIAFKLGLKFD----EESESGRT-RSPWSRLK-KEKLQ 74 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~-~~~~~~l~~~i~~~l~~~~~----~~~~~~~~-~~l~~~L~-~kr~L 74 (283)
+|+||||++..++.....++ . .++-|.... .+...+-++......+.+.. ..+..+.. +.+...-. +..++
T Consensus 109 ~G~GKTTt~~kLA~~l~~~G-~-kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvV 186 (443)
T 3dm5_A 109 QGSGKTTTVAKLARYFQKRG-Y-KVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDII 186 (443)
T ss_dssp TTSSHHHHHHHHHHHHHTTT-C-CEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEE
T ss_pred CCCCHHHHHHHHHHHHHHCC-C-eEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 79999999999988766432 2 334444432 23344555566666666421 12333332 22333322 35788
Q ss_pred EEc
Q 041028 75 IIC 77 (283)
Q Consensus 75 lV~ 77 (283)
||+
T Consensus 187 IID 189 (443)
T 3dm5_A 187 IVD 189 (443)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
No 158
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=86.69 E-value=3 Score=36.89 Aligned_cols=73 Identities=21% Similarity=0.187 Sum_probs=39.7
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHH--HHHHHHHHHhCCCC----CcCCHhhhHHhHHHHc--cCCcE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIK--KIQGEIAFKLGLKF----DEESESGRTRSPWSRL--KKEKL 73 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~--~l~~~i~~~l~~~~----~~~~~~~~~~~l~~~L--~~kr~ 73 (283)
+|+||||++..++......+ ..+..+.. ..+... +.++......+.+. ...+..+......+.+ .+..+
T Consensus 107 ~GsGKTT~~~~LA~~l~~~g--~~Vllvd~-D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~~~~Dv 183 (425)
T 2ffh_A 107 QGSGKTTTAAKLALYYKGKG--RRPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDL 183 (425)
T ss_dssp TTSSHHHHHHHHHHHHHTTT--CCEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHTTCSE
T ss_pred CCCCHHHHHHHHHHHHHHcC--CeEEEeec-cccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHHHCCCCE
Confidence 79999999999998766432 23444544 333332 23455556666542 1123333333222333 44578
Q ss_pred EEEc
Q 041028 74 QIIC 77 (283)
Q Consensus 74 LlV~ 77 (283)
+||+
T Consensus 184 VIID 187 (425)
T 2ffh_A 184 ILVD 187 (425)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 8884
No 159
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=86.67 E-value=0.28 Score=41.77 Aligned_cols=17 Identities=41% Similarity=0.632 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||+||+.+++...
T Consensus 64 ~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 64 AGLGKTTLANIISYEMS 80 (338)
T ss_dssp TTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 69999999999988754
No 160
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=86.61 E-value=0.29 Score=40.85 Aligned_cols=17 Identities=41% Similarity=0.728 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||+||+.+++...
T Consensus 59 ~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 59 TGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 69999999999998763
No 161
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=86.59 E-value=0.29 Score=38.44 Aligned_cols=15 Identities=40% Similarity=0.339 Sum_probs=13.3
Q ss_pred CCCCcHHHHHHHHHh
Q 041028 1 MGGIGKTTLAKEVAR 15 (283)
Q Consensus 1 mgGiGKTtLA~~v~~ 15 (283)
+.|+||||+++.+..
T Consensus 10 ~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 10 GIGSGKTTIANLFTD 24 (206)
T ss_dssp STTSCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999976
No 162
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=86.53 E-value=0.3 Score=40.44 Aligned_cols=17 Identities=53% Similarity=0.790 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+||||||+.+++...
T Consensus 82 ~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 82 PGVGKTHLARAVAGEAR 98 (278)
T ss_dssp TTSSHHHHHHHHHHHTT
T ss_pred CcChHHHHHHHHHHHcC
Confidence 69999999999998764
No 163
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=86.43 E-value=0.32 Score=37.84 Aligned_cols=16 Identities=31% Similarity=0.219 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHHhh
Q 041028 1 MGGIGKTTLAKEVARK 16 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~ 16 (283)
+.|+||||+|+.+...
T Consensus 16 ~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 16 NIGSGKSTVAALLRSW 31 (203)
T ss_dssp CTTSCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHC
Confidence 4699999999999885
No 164
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=86.37 E-value=0.34 Score=39.41 Aligned_cols=17 Identities=24% Similarity=0.304 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHhhh
Q 041028 1 MGGIGKTTLAKEVARKA 17 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (283)
.+|+||||+|+.+.+..
T Consensus 37 ~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 37 APGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998765
No 165
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=86.33 E-value=1.1 Score=40.03 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=29.9
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIAFK 47 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~~~ 47 (283)
+|+||||||..++....... =..++|++.. .+..++..+++..
T Consensus 209 pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 209 PAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHHH
Confidence 69999999999988765321 1357777765 4456777776643
No 166
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.31 E-value=1.1 Score=35.61 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=25.6
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIAF 46 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~~ 46 (283)
.|+||||+++.+.+..... .+..+. ..-.....+.+.+++++.
T Consensus 15 ~gsGKsT~~~~l~~~l~~~-~~~v~~-~~~p~~~~~g~~i~~~l~ 57 (213)
T 4edh_A 15 EGAGKSTNRDYLAERLRER-GIEVQL-TREPGGTPLAERIRELLL 57 (213)
T ss_dssp TTSSHHHHHHHHHHHHHTT-TCCEEE-EESSCSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHc-CCCccc-ccCCCCCHHHHHHHHHHh
Confidence 6999999999999887643 355432 222222223444555554
No 167
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=86.31 E-value=0.31 Score=38.05 Aligned_cols=16 Identities=31% Similarity=0.621 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|+|||||++.+....
T Consensus 16 ~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 16 SGAGKTSLVRALVKAL 31 (205)
T ss_dssp TTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhhC
Confidence 5999999999998764
No 168
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=86.23 E-value=0.26 Score=38.94 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
.|.|||||++.+.....
T Consensus 31 sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 31 PGSGKSTLSNPLAAALS 47 (208)
T ss_dssp TTSCTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 59999999999988765
No 169
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=86.13 E-value=0.4 Score=36.83 Aligned_cols=18 Identities=33% Similarity=0.255 Sum_probs=15.4
Q ss_pred CCCcHHHHHHHHHhhhcc
Q 041028 2 GGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (283)
.|+|||||+..+......
T Consensus 13 sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 13 KHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhHh
Confidence 699999999999987653
No 170
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=86.11 E-value=0.31 Score=43.48 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.7
Q ss_pred CCCcHHHHHHHHHhhhcc
Q 041028 2 GGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (283)
+|+||||||+.+++....
T Consensus 139 ~G~GKTtLa~aia~~l~~ 156 (440)
T 2z4s_A 139 VGLGKTHLLQSIGNYVVQ 156 (440)
T ss_dssp SSSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 699999999999997643
No 171
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=86.08 E-value=0.3 Score=42.82 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=22.1
Q ss_pred CCCcHHHHHHHHHhhhccCC---CC-CeEEEEEeCCCC
Q 041028 2 GGIGKTTLAKEVARKAKNGK---LF-DQIVFTEVSQNP 35 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~---~F-d~~~wv~v~~~~ 35 (283)
||+||||+|..++......+ .- ..++-|+.....
T Consensus 118 GGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~ 155 (398)
T 3ez2_A 118 GGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQS 155 (398)
T ss_dssp SSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTC
T ss_pred CCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC
Confidence 89999999999987754200 01 245667766443
No 172
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=86.07 E-value=0.33 Score=39.80 Aligned_cols=18 Identities=50% Similarity=0.551 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
|.|+||||+++.+.....
T Consensus 56 ~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 56 MMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp STTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 579999999999998654
No 173
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=86.01 E-value=0.32 Score=39.88 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||+||+.+++...
T Consensus 38 ~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 38 RGTGKELIASRLHYLSS 54 (265)
T ss_dssp TTSCHHHHHHHHHHTST
T ss_pred CCCcHHHHHHHHHHhcC
Confidence 69999999999998653
No 174
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=85.96 E-value=0.23 Score=40.63 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
++|+||||+|+.+.....
T Consensus 40 ~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 40 QSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CGGGTTHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 469999999999988653
No 175
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=85.94 E-value=0.33 Score=38.19 Aligned_cols=15 Identities=47% Similarity=0.616 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
.|+||||||+.+...
T Consensus 30 ~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 30 TNSGKTTLAKNLQKH 44 (207)
T ss_dssp TTSSHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHh
Confidence 699999999999874
No 176
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=85.73 E-value=0.35 Score=40.43 Aligned_cols=16 Identities=44% Similarity=0.542 Sum_probs=14.1
Q ss_pred CCCCcHHHHHHHHHhh
Q 041028 1 MGGIGKTTLAKEVARK 16 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~ 16 (283)
++|+||||+|+.+...
T Consensus 10 ~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 10 CPGSGKSTWAREFIAK 25 (301)
T ss_dssp CTTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 4799999999999874
No 177
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.66 E-value=0.29 Score=43.08 Aligned_cols=18 Identities=44% Similarity=0.571 Sum_probs=16.1
Q ss_pred CCCcHHHHHHHHHhhhcc
Q 041028 2 GGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (283)
+|.|||.||+++++....
T Consensus 191 PGTGKTllAkAiA~e~~~ 208 (405)
T 4b4t_J 191 PGTGKTLLARAVAHHTDC 208 (405)
T ss_dssp SSSSHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHhhCC
Confidence 799999999999998764
No 178
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=85.47 E-value=0.38 Score=38.21 Aligned_cols=17 Identities=35% Similarity=0.401 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||||+..+.....
T Consensus 47 ~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 47 IGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 79999999999987653
No 179
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=85.46 E-value=0.73 Score=42.68 Aligned_cols=29 Identities=21% Similarity=0.469 Sum_probs=20.7
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVS 32 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~ 32 (283)
||+||||+|..++......+ ..++.|+..
T Consensus 17 GGvGKTT~a~~lA~~lA~~G--~rVLlvd~D 45 (589)
T 1ihu_A 17 GGVGKTSISCATAIRLAEQG--KRVLLVSTD 45 (589)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CcCHHHHHHHHHHHHHHHCC--CcEEEEECC
Confidence 89999999999887755432 235666655
No 180
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=85.46 E-value=0.4 Score=37.56 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHhhh
Q 041028 1 MGGIGKTTLAKEVARKA 17 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (283)
+.|+||||+|+.+....
T Consensus 20 ~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 20 KIGTGKSTVCEILKNKY 36 (192)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 46999999999998863
No 181
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=85.39 E-value=0.36 Score=41.69 Aligned_cols=17 Identities=53% Similarity=0.655 Sum_probs=15.3
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||+||+.+++...
T Consensus 93 pGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 93 PGTGKSYLAKAVATEAN 109 (355)
T ss_dssp TTSCHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHhC
Confidence 69999999999999764
No 182
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.32 E-value=0.3 Score=43.38 Aligned_cols=18 Identities=50% Similarity=0.613 Sum_probs=16.1
Q ss_pred CCCcHHHHHHHHHhhhcc
Q 041028 2 GGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (283)
+|+|||+||+++++....
T Consensus 215 PGtGKT~lakAiA~~~~~ 232 (428)
T 4b4t_K 215 PGTGKTMLVKAVANSTKA 232 (428)
T ss_dssp TTTTHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHhCC
Confidence 799999999999998753
No 183
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=85.27 E-value=5 Score=33.73 Aligned_cols=28 Identities=11% Similarity=0.255 Sum_probs=21.6
Q ss_pred CCCCcHHHHHHHHHhhhccCCCCCeEEEEEeCC
Q 041028 1 MGGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQ 33 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~ 33 (283)
++|+|||||++++++.... ..+|++...
T Consensus 38 ~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~ 65 (357)
T 2fna_A 38 LRRTGKSSIIKIGINELNL-----PYIYLDLRK 65 (357)
T ss_dssp STTSSHHHHHHHHHHHHTC-----CEEEEEGGG
T ss_pred CCCCCHHHHHHHHHHhcCC-----CEEEEEchh
Confidence 4799999999999987542 257887753
No 184
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=85.26 E-value=0.56 Score=37.18 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=25.7
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIAFKLGL 50 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~~~l~~ 50 (283)
+|+|||||++.++...... =..++|+.... ...++...+ ..++.
T Consensus 32 ~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~~-~~~~~ 75 (235)
T 2w0m_A 32 PGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQA-KQFNW 75 (235)
T ss_dssp TTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHHH-HHTTC
T ss_pred CCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHHH-HHhcc
Confidence 5999999999998654322 12456665443 344444333 34443
No 185
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=85.26 E-value=0.38 Score=37.87 Aligned_cols=17 Identities=47% Similarity=0.530 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
.|+|||||++.+.....
T Consensus 15 ~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 15 TASGKTTLAQALARTLG 31 (211)
T ss_dssp TTSSHHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 59999999999988644
No 186
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=85.19 E-value=0.38 Score=38.00 Aligned_cols=17 Identities=29% Similarity=0.579 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
.|+|||||++.+.....
T Consensus 17 sGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 17 SGVGKGTVREAVFKDPE 33 (208)
T ss_dssp TTSCHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHhhCC
Confidence 69999999999988653
No 187
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=85.16 E-value=0.66 Score=36.70 Aligned_cols=42 Identities=26% Similarity=0.286 Sum_probs=24.7
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIAF 46 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~~ 46 (283)
-|+||||+++.+++.... .++.+. ..-.......+.+++++.
T Consensus 11 dGsGKsTq~~~L~~~L~~--~~~v~~-~~eP~~t~~g~~ir~~l~ 52 (205)
T 4hlc_A 11 EGSGKTTVINEVYHRLVK--DYDVIM-TREPGGVPTGEEIRKIVL 52 (205)
T ss_dssp TTSCHHHHHHHHHHHHTT--TSCEEE-EESSTTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHC--CCCEEE-eeCCCCChHHHHHHHHHh
Confidence 599999999999998752 354432 221222234445555443
No 188
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=85.00 E-value=0.28 Score=38.59 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
.|+||||+|+.+.....
T Consensus 9 ~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 9 DGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 59999999999988764
No 189
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=84.96 E-value=0.39 Score=41.49 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||+||+.+++...
T Consensus 126 pGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 126 PGTGKTLIGKCIASQSG 142 (357)
T ss_dssp TTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcC
Confidence 69999999999998753
No 190
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=84.81 E-value=0.46 Score=38.24 Aligned_cols=40 Identities=25% Similarity=0.378 Sum_probs=24.2
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEI 44 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i 44 (283)
+|+|||+||.+++.+...+ .-..+++++... +..++.+.+
T Consensus 39 pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 39 TGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS--CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh-cCCCceeecccC--CHHHHHHHH
Confidence 6999999999876543221 123566776654 345554443
No 191
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=84.77 E-value=1 Score=40.16 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=28.6
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIAFK 47 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~~~ 47 (283)
+|+||||||..++.+...++ ..++|++... +..++..+++..
T Consensus 206 pG~GKTtlal~ia~~~a~~g--~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 206 PSMGKTAFALKQAKNMSDND--DVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp SSSSHHHHHHHHHHHHHHTT--CEEEEECSSS--CTTHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHcC--CEEEEEECCC--CHHHHHHHHHHH
Confidence 79999999999988765442 3577776654 344555555543
No 192
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=84.74 E-value=0.39 Score=40.20 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=19.7
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVS 32 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~ 32 (283)
+|+|||+||+.+++..... -...+.++.+
T Consensus 56 ~GtGKt~la~~la~~~~~~--~~~~~~~~~~ 84 (311)
T 4fcw_A 56 TGVGKTELAKTLAATLFDT--EEAMIRIDMT 84 (311)
T ss_dssp SSSSHHHHHHHHHHHHHSC--GGGEEEEEGG
T ss_pred CCcCHHHHHHHHHHHHcCC--CcceEEeecc
Confidence 6999999999999876432 1224455544
No 193
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.64 E-value=0.35 Score=43.10 Aligned_cols=18 Identities=39% Similarity=0.536 Sum_probs=16.1
Q ss_pred CCCcHHHHHHHHHhhhcc
Q 041028 2 GGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (283)
+|.|||.||+++++....
T Consensus 224 PGTGKTllAkAiA~e~~~ 241 (434)
T 4b4t_M 224 PGTGKTLLARACAAQTNA 241 (434)
T ss_dssp TTSSHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHhCC
Confidence 799999999999998653
No 194
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=84.58 E-value=0.42 Score=40.17 Aligned_cols=17 Identities=47% Similarity=0.542 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+||||+|+.+++...
T Consensus 55 ~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 55 PGVGKTTAALALARELF 71 (327)
T ss_dssp TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 69999999999998753
No 195
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=84.50 E-value=0.45 Score=37.69 Aligned_cols=15 Identities=40% Similarity=0.397 Sum_probs=13.2
Q ss_pred CCCCcHHHHHHHHHh
Q 041028 1 MGGIGKTTLAKEVAR 15 (283)
Q Consensus 1 mgGiGKTtLA~~v~~ 15 (283)
+.|+||||+++.+..
T Consensus 12 ~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 12 GIGSGKSTVANAFAD 26 (218)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999976
No 196
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=84.48 E-value=0.47 Score=37.05 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
..|+||||+|+.+.....
T Consensus 10 ~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 10 PSASGKSSVARRVAAALG 27 (208)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 369999999999988654
No 197
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.48 E-value=0.35 Score=43.07 Aligned_cols=18 Identities=50% Similarity=0.521 Sum_probs=16.1
Q ss_pred CCCcHHHHHHHHHhhhcc
Q 041028 2 GGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (283)
+|+|||+||+++++....
T Consensus 224 PGtGKTllAkAiA~e~~~ 241 (437)
T 4b4t_L 224 PGTGKTLLAKAVAATIGA 241 (437)
T ss_dssp TTSSHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHhCC
Confidence 799999999999998764
No 198
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=84.37 E-value=0.46 Score=38.71 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
+.|+||||+|+.+.....
T Consensus 30 ~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 30 GTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp STTSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 369999999999988644
No 199
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=84.35 E-value=0.44 Score=36.81 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
.|+|||||++.+.....
T Consensus 10 sGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 10 SGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp SSSSHHHHHHHHHHHCG
T ss_pred CCCCHHHHHHHHHhhCC
Confidence 59999999999997654
No 200
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=84.27 E-value=0.74 Score=37.01 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=26.9
Q ss_pred CCCCcHHHHHHHHHhhhcc-CCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 041028 1 MGGIGKTTLAKEVARKAKN-GKLFDQIVFTEVSQNPNIKKIQGEIAF 46 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~-~~~Fd~~~wv~v~~~~~~~~l~~~i~~ 46 (283)
..|+||||+++.+.+.... . .++.++...-.......+.+++++.
T Consensus 29 ~~g~GKst~~~~l~~~l~~~~-g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 29 IDGSGKTTQSHLLAEYLSEIY-GVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp STTSSHHHHHHHHHHHHHHHH-CGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhcc-CceeeEeeeCCCCChHHHHHHHHHh
Confidence 3699999999999988654 3 2444432222222234555566655
No 201
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=84.27 E-value=0.45 Score=37.34 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
.|+|||||++.+.....
T Consensus 31 ~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 31 SRSGKTTLANQLSQTLR 47 (201)
T ss_dssp TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 69999999999987654
No 202
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.20 E-value=0.44 Score=40.60 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+||||||+.+++..
T Consensus 67 ~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 67 PGTGKTSTILALTKEL 82 (353)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 6999999999999874
No 203
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=84.18 E-value=0.44 Score=42.65 Aligned_cols=17 Identities=59% Similarity=0.710 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+||||||+.+++...
T Consensus 59 pGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 59 PGTGKTTLAEVIARYAN 75 (447)
T ss_dssp TTSSHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHhC
Confidence 69999999999998764
No 204
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=84.06 E-value=0.46 Score=41.22 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||+||+.+++...
T Consensus 81 ~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 81 TGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp TTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 69999999999998763
No 205
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=83.95 E-value=0.46 Score=41.03 Aligned_cols=17 Identities=47% Similarity=0.556 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||++|+.+++...
T Consensus 60 pGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 60 TGSGKTLLAETLARLLD 76 (363)
T ss_dssp TTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcC
Confidence 69999999999998763
No 206
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=83.90 E-value=0.47 Score=35.92 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|.|||||.+.++.-.
T Consensus 42 nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 42 LGAGKTTLTRGMLQGI 57 (158)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC
Confidence 4999999999998865
No 207
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=83.87 E-value=6.1 Score=35.77 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=27.1
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQ-NPNIKKIQGEIAFKLGLK 51 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~-~~~~~~l~~~i~~~l~~~ 51 (283)
+|+||||++..++......+ . .+.-|+... .+...+.++......+.+
T Consensus 110 ~GvGKTTl~~kLA~~l~~~G-~-kVllVd~D~~r~aa~~qL~~~~~~~~i~ 158 (504)
T 2j37_W 110 QGSGKTTTCSKLAYYYQRKG-W-KTCLICADTFRAGAFDQLKQNATKARIP 158 (504)
T ss_dssp TTSSHHHHHHHHHHHHHHTT-C-CEEEEEECCSSSHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhCC-C-eEEEEeccccchhHHHHHHHHhhccCce
Confidence 69999999999987765432 2 244455432 222333334444444543
No 208
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=83.86 E-value=0.46 Score=35.12 Aligned_cols=16 Identities=31% Similarity=0.727 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 12 ~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 12 GGVGKSALTIQLIQNH 27 (166)
T ss_dssp TTSSHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHhCc
Confidence 6999999999998653
No 209
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=83.85 E-value=0.51 Score=38.53 Aligned_cols=18 Identities=39% Similarity=0.501 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
+.|+|||||++.+.....
T Consensus 35 ~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 35 PSGAGKGTLCKALAESLN 52 (252)
T ss_dssp CTTSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 469999999999997654
No 210
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.83 E-value=0.39 Score=43.00 Aligned_cols=18 Identities=39% Similarity=0.530 Sum_probs=16.1
Q ss_pred CCCcHHHHHHHHHhhhcc
Q 041028 2 GGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (283)
+|+|||+||+++++....
T Consensus 252 PGTGKTlLAkAiA~e~~~ 269 (467)
T 4b4t_H 252 PGTGKTLCARAVANRTDA 269 (467)
T ss_dssp TTSSHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHhccCC
Confidence 699999999999998764
No 211
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=83.75 E-value=0.52 Score=41.13 Aligned_cols=34 Identities=15% Similarity=0.375 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIK 38 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~ 38 (283)
||+||||+|..++......+ ..++-|+. ...++.
T Consensus 11 GG~GKTt~a~~la~~la~~g--~~vllvd~-~~~~l~ 44 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQG--KRVLLAGL-AEPVLP 44 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHTT--CCEEEEEC-SCSHHH
T ss_pred CCCcHHHHHHHHHHHHHHCC--CCeEEEeC-CCCChH
Confidence 89999999999887654432 23556666 444333
No 212
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=83.72 E-value=0.53 Score=38.03 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
.|+||||+++.+++...
T Consensus 11 ~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 11 IAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp TTSSHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHcC
Confidence 69999999999998753
No 213
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=83.72 E-value=0.52 Score=36.76 Aligned_cols=16 Identities=38% Similarity=0.528 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||++.+..+.
T Consensus 10 SG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 10 SGTGKSTLLKKLFAEY 25 (186)
T ss_dssp TTSSHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhC
Confidence 6999999999998764
No 214
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=83.49 E-value=1 Score=40.22 Aligned_cols=41 Identities=12% Similarity=0.255 Sum_probs=28.0
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIA 45 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~ 45 (283)
+|+||||||..++....... =..++|++... +..++...++
T Consensus 212 pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 212 PSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 69999999999988765321 12577777654 4466666664
No 215
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=83.45 E-value=0.52 Score=37.20 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||||+..+.....
T Consensus 39 ~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 39 IGSGKTLLIERTIERIG 55 (221)
T ss_dssp TTSCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 69999999999988753
No 216
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=83.25 E-value=0.41 Score=36.52 Aligned_cols=13 Identities=46% Similarity=0.603 Sum_probs=11.3
Q ss_pred CCCcHHHHHHHHH
Q 041028 2 GGIGKTTLAKEVA 14 (283)
Q Consensus 2 gGiGKTtLA~~v~ 14 (283)
.|.|||||++.++
T Consensus 18 nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 18 SGSGKSTFAKKHF 30 (171)
T ss_dssp TTSCHHHHHHHHS
T ss_pred CCCCHHHHHHHHc
Confidence 5999999999854
No 217
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=83.07 E-value=1.4 Score=39.94 Aligned_cols=43 Identities=7% Similarity=0.107 Sum_probs=30.2
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIAFK 47 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~~~ 47 (283)
+|+||||||..++.+...+. =..++|++... +..++...++..
T Consensus 251 pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 251 SGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp SCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHhc-CCcEEEEeccC--CHHHHHHHHHHH
Confidence 69999999999988765431 13577877655 456777776543
No 218
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.03 E-value=0.51 Score=42.99 Aligned_cols=16 Identities=56% Similarity=0.628 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+||||||+.+++..
T Consensus 86 pGtGKTtla~~la~~l 101 (516)
T 1sxj_A 86 PGIGKTTAAHLVAQEL 101 (516)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc
Confidence 6999999999999876
No 219
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=82.98 E-value=0.51 Score=38.00 Aligned_cols=15 Identities=47% Similarity=0.581 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
.|+|||||++.++..
T Consensus 39 nGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 39 TGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 599999999998843
No 220
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=82.93 E-value=0.55 Score=36.79 Aligned_cols=16 Identities=38% Similarity=0.596 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|+|||||++.+....
T Consensus 13 sGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 13 SGAGKSTLLKKLFQEH 28 (198)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhC
Confidence 5999999999998754
No 221
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=82.86 E-value=0.55 Score=39.69 Aligned_cols=17 Identities=41% Similarity=0.606 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||++|+.+++...
T Consensus 57 ~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 57 PGTGKTTVAKALCHDVN 73 (324)
T ss_dssp TTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 69999999999998763
No 222
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=82.72 E-value=0.6 Score=40.36 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
++|+||||+++.++....
T Consensus 32 ~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 32 SPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhC
Confidence 579999999999988654
No 223
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=82.64 E-value=0.55 Score=39.40 Aligned_cols=44 Identities=11% Similarity=0.024 Sum_probs=24.7
Q ss_pred CCCcHHHHHHHHHhhhccCC-CCCeEEEEEeCCCCCHHHHHHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGK-LFDQIVFTEVSQNPNIKKIQGEIA 45 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~-~Fd~~~wv~v~~~~~~~~l~~~i~ 45 (283)
.|+||||||+.+........ ....+..|+...-+-.......+.
T Consensus 40 sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 40 QGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp TTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHh
Confidence 59999999999887654321 022344445544333334444443
No 224
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=82.64 E-value=0.63 Score=37.70 Aligned_cols=18 Identities=28% Similarity=0.517 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
.+|+||||+|+.+.....
T Consensus 17 ~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 17 PAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 369999999999988754
No 225
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=82.53 E-value=1.4 Score=37.91 Aligned_cols=47 Identities=23% Similarity=0.259 Sum_probs=28.8
Q ss_pred CCCcHHHHHHHHHhhhccC---CCCC-eEEEEEeCCCCCHHHHHHHHHHHhC
Q 041028 2 GGIGKTTLAKEVARKAKNG---KLFD-QIVFTEVSQNPNIKKIQGEIAFKLG 49 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~---~~Fd-~~~wv~v~~~~~~~~l~~~i~~~l~ 49 (283)
.|+|||||+..++...... +... .++|++....+.... +..+++..+
T Consensus 140 ~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~ 190 (349)
T 1pzn_A 140 FGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRG 190 (349)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcC
Confidence 6999999999998765211 1112 348888766654433 334555444
No 226
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=82.52 E-value=0.41 Score=40.68 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||+||+.+++...
T Consensus 55 pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 55 PGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp CCHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHhC
Confidence 69999999999998654
No 227
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=82.52 E-value=0.58 Score=41.89 Aligned_cols=17 Identities=41% Similarity=0.540 Sum_probs=15.6
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||+||+.+++...
T Consensus 72 pGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 72 PGTGKTALALAIAQELG 88 (456)
T ss_dssp TTSSHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhC
Confidence 69999999999999865
No 228
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=82.51 E-value=0.57 Score=38.00 Aligned_cols=16 Identities=19% Similarity=0.327 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|+|||||++.+....
T Consensus 34 ~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 34 TASGKSTVCEKIMELL 49 (245)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 5999999999998754
No 229
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=82.49 E-value=0.58 Score=36.83 Aligned_cols=16 Identities=19% Similarity=0.478 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|+|||||++.+..-.
T Consensus 29 nGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 29 SAVGKSTVVRCLRERI 44 (207)
T ss_dssp TTSSHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhhC
Confidence 5999999999998765
No 230
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=82.47 E-value=0.55 Score=34.64 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 10 ~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 10 PNVGKSSLFNRLLKKR 25 (161)
T ss_dssp TTSSHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHhCCC
Confidence 6999999999998753
No 231
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.40 E-value=0.48 Score=42.03 Aligned_cols=18 Identities=50% Similarity=0.612 Sum_probs=16.2
Q ss_pred CCCcHHHHHHHHHhhhcc
Q 041028 2 GGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (283)
+|.|||.||+++++....
T Consensus 225 PGTGKTlLAkAiA~e~~~ 242 (437)
T 4b4t_I 225 PGTGKTLLAKAVANQTSA 242 (437)
T ss_dssp TTTTHHHHHHHHHHHHTC
T ss_pred CCchHHHHHHHHHHHhCC
Confidence 799999999999998764
No 232
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=82.38 E-value=0.58 Score=40.21 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHhhhcc
Q 041028 2 GGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (283)
+|+||||+|+.+++....
T Consensus 47 ~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 47 RGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp TTSSHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHhCC
Confidence 699999999999987643
No 233
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=82.34 E-value=1.5 Score=36.96 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=27.7
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCH--HHHHHHHHHHhCCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNI--KKIQGEIAFKLGLK 51 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~--~~l~~~i~~~l~~~ 51 (283)
+|+||||++..++......+ ..+.++... .+.. .+-+..+++.++.+
T Consensus 113 ~GsGKTTl~~~LA~~l~~~g--~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~ 161 (306)
T 1vma_A 113 NGTGKTTSCGKLAKMFVDEG--KSVVLAAAD-TFRAAAIEQLKIWGERVGAT 161 (306)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEEEC-TTCHHHHHHHHHHHHHHTCE
T ss_pred CCChHHHHHHHHHHHHHhcC--CEEEEEccc-cccHHHHHHHHHHHHHcCCc
Confidence 69999999999998765431 234555443 2222 22334555665543
No 234
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.27 E-value=3 Score=44.18 Aligned_cols=69 Identities=19% Similarity=0.181 Sum_probs=44.0
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------cCCHhhhHHhHHHHccC--CcE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIAFKLGLKFD------EESESGRTRSPWSRLKK--EKL 73 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~~~L~~--kr~ 73 (283)
+|+|||+||.++.......+ ..++|+++...++... ++.+|.+.+ ....++..+.++...+. -+.
T Consensus 1436 pGtGKT~LA~ala~ea~~~G--~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~l 1508 (2050)
T 3cmu_A 1436 ESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 1508 (2050)
T ss_dssp TTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred CCCCHHHHHHHHHHHHHHcC--CcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCCE
Confidence 69999999999988765432 3578888888877766 556664322 12334445555555432 267
Q ss_pred EEEc
Q 041028 74 QIIC 77 (283)
Q Consensus 74 LlV~ 77 (283)
++|+
T Consensus 1509 VVID 1512 (2050)
T 3cmu_A 1509 IVVD 1512 (2050)
T ss_dssp EEES
T ss_pred EEEc
Confidence 7773
No 235
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=82.23 E-value=0.64 Score=39.63 Aligned_cols=17 Identities=35% Similarity=0.311 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHhhh
Q 041028 1 MGGIGKTTLAKEVARKA 17 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (283)
..|+||||||..++...
T Consensus 13 ptGsGKTtla~~La~~l 29 (323)
T 3crm_A 13 PTAAGKTDLAMALADAL 29 (323)
T ss_dssp CTTSCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 36999999999999864
No 236
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=82.17 E-value=0.59 Score=41.74 Aligned_cols=16 Identities=56% Similarity=0.679 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||+||+.+++..
T Consensus 176 pGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 176 PGTGKSYLAKAVATEA 191 (444)
T ss_dssp TTSSHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHc
Confidence 6999999999999975
No 237
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=82.16 E-value=0.49 Score=37.61 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+||||+|..+++...
T Consensus 67 PGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 67 ANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp GGGCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 69999999999998753
No 238
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=82.02 E-value=1.9 Score=34.37 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHHhhhcc
Q 041028 1 MGGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (283)
..|+||||+++.+.+....
T Consensus 13 ~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 13 LDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CSSSSHHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHhcc
Confidence 3699999999999998763
No 239
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=82.01 E-value=0.59 Score=39.63 Aligned_cols=32 Identities=13% Similarity=0.112 Sum_probs=20.4
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQ 33 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~ 33 (283)
.|+|||||++.+..-......-..+.+|....
T Consensus 99 sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~ 130 (312)
T 3aez_A 99 VAVGKSTTARVLQALLARWDHHPRVDLVTTDG 130 (312)
T ss_dssp TTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGG
T ss_pred CCchHHHHHHHHHhhccccCCCCeEEEEecCc
Confidence 59999999999988654320002355665543
No 240
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=81.99 E-value=0.66 Score=36.53 Aligned_cols=17 Identities=12% Similarity=0.487 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
.|+|||||++.+.....
T Consensus 28 SGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 28 SGVGRSHIKNALLSQNP 44 (197)
T ss_dssp TTSSHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHhhCC
Confidence 59999999999987643
No 241
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=81.99 E-value=0.55 Score=41.56 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHhhh
Q 041028 1 MGGIGKTTLAKEVARKA 17 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (283)
++|+||||+|+.+..+.
T Consensus 266 ~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 266 FPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CTTSSHHHHHHHHTGGG
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 57999999999998754
No 242
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=81.98 E-value=0.63 Score=35.97 Aligned_cols=16 Identities=31% Similarity=0.655 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|+|||||.+.+....
T Consensus 38 ~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 38 SGVGKSNLLSRFTRNE 53 (191)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhcCC
Confidence 6999999999998753
No 243
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=81.89 E-value=0.67 Score=36.17 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
.|+|||||++.++....
T Consensus 10 nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 10 PGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CSSCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHhhcc
Confidence 59999999999988654
No 244
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=81.88 E-value=0.62 Score=40.69 Aligned_cols=17 Identities=53% Similarity=0.624 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||+||+.+++...
T Consensus 157 pGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 157 PGNGKTMLAKAVAAESN 173 (389)
T ss_dssp TTSCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhhc
Confidence 69999999999988743
No 245
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=81.86 E-value=0.59 Score=35.75 Aligned_cols=16 Identities=31% Similarity=0.727 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||+..+....
T Consensus 30 ~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 30 GGVGKSALTIQLIQNH 45 (190)
T ss_dssp TTSSHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHcCC
Confidence 6999999999998753
No 246
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=81.82 E-value=0.62 Score=38.79 Aligned_cols=15 Identities=27% Similarity=0.629 Sum_probs=13.2
Q ss_pred CCCCcHHHHHHHHHh
Q 041028 1 MGGIGKTTLAKEVAR 15 (283)
Q Consensus 1 mgGiGKTtLA~~v~~ 15 (283)
+.|+||||+|+.+..
T Consensus 83 ~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 83 ISGSGKSSVAQRLKN 97 (281)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999983
No 247
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.81 E-value=0.63 Score=39.73 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
.|+||||+|+.+++...
T Consensus 55 ~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 55 PGTGKTSTIVALAREIY 71 (340)
T ss_dssp SSSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 59999999999998754
No 248
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=81.72 E-value=0.68 Score=36.67 Aligned_cols=17 Identities=41% Similarity=0.519 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+||||.|+.++.+..
T Consensus 9 PGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 9 PGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp TTSSHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHC
Confidence 79999999999998764
No 249
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=81.60 E-value=0.65 Score=36.99 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|+|||||++.+....
T Consensus 32 sGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 32 SGVGKGTLIKKLLNEF 47 (218)
T ss_dssp TTSSHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhhC
Confidence 5999999999998754
No 250
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=81.57 E-value=0.71 Score=35.53 Aligned_cols=17 Identities=41% Similarity=0.474 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
.|+|||||+..+.....
T Consensus 15 sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 15 SGTGKTTLLKKLIPALC 31 (174)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcc
Confidence 59999999999988754
No 251
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=81.52 E-value=3.3 Score=43.84 Aligned_cols=70 Identities=19% Similarity=0.178 Sum_probs=45.7
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------cCCHhhhHHhHHHHcc--CCcE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIAFKLGLKFD------EESESGRTRSPWSRLK--KEKL 73 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~~~L~--~kr~ 73 (283)
+|+||||||.+++......+ ..++|++....++... ++.++.+.+ ..+.++..+.++...+ +-++
T Consensus 392 pGsGKTtLaLqia~~~a~~G--~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~lv~~~~~~l 464 (2050)
T 3cmu_A 392 ESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 464 (2050)
T ss_dssp TTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred CCCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHHHHHhcCCcE
Confidence 69999999999988765432 3689999888877642 566776432 2344555555554443 2367
Q ss_pred EEEcC
Q 041028 74 QIICG 78 (283)
Q Consensus 74 LlV~G 78 (283)
++|+.
T Consensus 465 IVIDS 469 (2050)
T 3cmu_A 465 IVVDS 469 (2050)
T ss_dssp EEESC
T ss_pred EEECC
Confidence 77743
No 252
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=81.29 E-value=2.8 Score=43.75 Aligned_cols=69 Identities=19% Similarity=0.186 Sum_probs=43.6
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------cCCHhhhHHhHHHHcc--CCcE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIAFKLGLKFD------EESESGRTRSPWSRLK--KEKL 73 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~~~L~--~kr~ 73 (283)
+|+||||||.+++......+ ..++|++........ .++.++.+.+ ..+.++..+.++...+ +-++
T Consensus 741 PG~GKTtLal~lA~~aa~~g--~~VlyiS~Ees~~ql-----~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~~~~l 813 (1706)
T 3cmw_A 741 ESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 813 (1706)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred CCCCcHHHHHHHHHHHHHcC--CCeEEEeccchHHHH-----HHHHcCCChhheEEecCCcHHHHHHHHHHHHHccCCCE
Confidence 69999999999988765432 357888887776653 1566665421 2244455555554443 2367
Q ss_pred EEEc
Q 041028 74 QIIC 77 (283)
Q Consensus 74 LlV~ 77 (283)
++|+
T Consensus 814 VVID 817 (1706)
T 3cmw_A 814 IVVD 817 (1706)
T ss_dssp EEES
T ss_pred EEEe
Confidence 7774
No 253
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=81.29 E-value=0.7 Score=42.05 Aligned_cols=19 Identities=5% Similarity=-0.015 Sum_probs=16.5
Q ss_pred CCCCcHHHHHHHHHhhhcc
Q 041028 1 MGGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (283)
+.|+||||+|+.++.....
T Consensus 403 lsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 403 SLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TCCSCHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 4699999999999998753
No 254
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=81.27 E-value=0.35 Score=42.56 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=8.0
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
||+||||+|..++....
T Consensus 121 GGvGKTT~a~nLA~~LA 137 (403)
T 3ez9_A 121 GGVSKTVSTVTLAHALR 137 (403)
T ss_dssp -------CHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHH
Confidence 89999999999887654
No 255
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=81.21 E-value=0.64 Score=41.93 Aligned_cols=17 Identities=53% Similarity=0.661 Sum_probs=15.3
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||+||+.+++...
T Consensus 58 pGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 58 PGTGKTLLARAVAGEAN 74 (476)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcC
Confidence 69999999999999764
No 256
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=81.08 E-value=0.7 Score=35.84 Aligned_cols=15 Identities=33% Similarity=0.698 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
.|+|||||.+.+...
T Consensus 14 ~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 14 SGVGKSNLLSRFTRN 28 (199)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 599999999999875
No 257
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=81.06 E-value=0.65 Score=38.44 Aligned_cols=33 Identities=27% Similarity=0.515 Sum_probs=21.4
Q ss_pred CCCcHHHHHHHHHhhhccCC-C-------CCeEEEEEeCCC
Q 041028 2 GGIGKTTLAKEVARKAKNGK-L-------FDQIVFTEVSQN 34 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~-~-------Fd~~~wv~v~~~ 34 (283)
+|+||||||..++....... . -..+++++....
T Consensus 39 ~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 39 GGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp TTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred CCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence 69999999999886543210 0 124567776654
No 258
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=81.03 E-value=0.47 Score=43.09 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||+||+.+++...
T Consensus 50 PGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 50 PGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp SSSSHHHHHHHGGGGBS
T ss_pred chHHHHHHHHHHHHHHh
Confidence 69999999999998663
No 259
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=80.97 E-value=2.9 Score=43.62 Aligned_cols=70 Identities=19% Similarity=0.168 Sum_probs=44.9
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------cCCHhhhHHhHHHHccC--CcE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIAFKLGLKFD------EESESGRTRSPWSRLKK--EKL 73 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~~~L~~--kr~ 73 (283)
+|+||||||.+++...... =..++|++....++.. .++.++.+.+ ..+.++..+.++...+. -+.
T Consensus 392 pGsGKTtLaLq~a~~~~~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv~~~~~~l 464 (1706)
T 3cmw_A 392 ESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 464 (1706)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred CCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHHHHHHhcCCCE
Confidence 6999999999998775543 2468999988887764 2566766432 12444455555544432 367
Q ss_pred EEEcC
Q 041028 74 QIICG 78 (283)
Q Consensus 74 LlV~G 78 (283)
++|+.
T Consensus 465 VVIDS 469 (1706)
T 3cmw_A 465 IVVDS 469 (1706)
T ss_dssp EEESC
T ss_pred EEECC
Confidence 77743
No 260
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=80.91 E-value=0.52 Score=36.10 Aligned_cols=15 Identities=40% Similarity=0.632 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||.+.+...
T Consensus 11 ~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 11 TGSGKTTLLQQLMKT 25 (184)
T ss_dssp TTSSHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999998763
No 261
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=80.87 E-value=0.67 Score=39.73 Aligned_cols=18 Identities=39% Similarity=0.495 Sum_probs=15.6
Q ss_pred CCCcHHHHHHHHHhhhcc
Q 041028 2 GGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (283)
-|+||||+++.+.+....
T Consensus 16 dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 16 YGIGKSTTGRVMASAASG 33 (334)
T ss_dssp TTSSHHHHHHHHHSGGGC
T ss_pred CCCCHHHHHHHHHHHhcc
Confidence 399999999999988764
No 262
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=80.72 E-value=0.41 Score=40.77 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||+||+.+++...
T Consensus 54 ~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 54 RGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGGCTTHHHHHHHHHSC
T ss_pred CCccHHHHHHHHHHhCc
Confidence 59999999999998754
No 263
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=80.67 E-value=0.76 Score=34.08 Aligned_cols=15 Identities=20% Similarity=0.620 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 14 ~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 14 GAVGKSSMIQRYCKG 28 (168)
T ss_dssp TTSSHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999875
No 264
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=80.64 E-value=0.59 Score=42.04 Aligned_cols=16 Identities=38% Similarity=0.688 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||+||+.+++..
T Consensus 210 pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 210 PGVGKTAIAEGLAQQI 225 (468)
T ss_dssp TTTTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6999999999999885
No 265
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=80.60 E-value=0.67 Score=34.74 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+...
T Consensus 12 ~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 12 PNVGKSTIFNALTGE 26 (165)
T ss_dssp TTSSHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999999864
No 266
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=80.58 E-value=1.1 Score=40.95 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=16.1
Q ss_pred CCCCcHHHHHHHHHhhhcc
Q 041028 1 MGGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (283)
++|.||||+|+.+......
T Consensus 43 lpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 43 LPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp CTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 5799999999999887643
No 267
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.56 E-value=0.58 Score=39.96 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
.|+||||||+.+++.
T Consensus 45 ~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 45 NGTGKKTRCMALLES 59 (354)
T ss_dssp TTSSHHHHHHTHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 599999999999885
No 268
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=80.30 E-value=0.77 Score=38.36 Aligned_cols=16 Identities=44% Similarity=0.511 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||++|+.+++..
T Consensus 47 ~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 47 PGTGKTATAIALARDL 62 (319)
T ss_dssp SSSSHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHh
Confidence 6999999999999875
No 269
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=79.97 E-value=0.8 Score=36.63 Aligned_cols=17 Identities=24% Similarity=0.516 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
.|+|||||.+.+.....
T Consensus 25 sGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 25 SGAGKSSLIQALLKTQP 41 (219)
T ss_dssp TTSCHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhccCC
Confidence 59999999999988654
No 270
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=79.96 E-value=1.2 Score=39.98 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=29.8
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCC-CHHHHHHHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNP-NIKKIQGEIAF 46 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~-~~~~l~~~i~~ 46 (283)
+|+|||||++.+....... +-+.++++-+++.. ...+++.++..
T Consensus 160 sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 160 AGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp SSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhh
Confidence 5999999999998876543 12556777777654 34556555543
No 271
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=79.89 E-value=0.78 Score=38.66 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=14.4
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||++|+.+++..
T Consensus 34 ~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 34 SGTGKELVARALHACS 49 (304)
T ss_dssp TTSCHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHhC
Confidence 6999999999999864
No 272
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=79.77 E-value=1.5 Score=35.32 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=23.3
Q ss_pred CCCCcHHHHHHHHHhhhccC---CCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 041028 1 MGGIGKTTLAKEVARKAKNG---KLFDQIVFTEVSQNPNIKKIQGEIAFK 47 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~---~~Fd~~~wv~v~~~~~~~~l~~~i~~~ 47 (283)
..|+||||+++.+++..... ..++.. ...-.......+.+++++..
T Consensus 33 ~~GsGKsT~~~~l~~~l~~~~~~~g~~v~-~~rep~~t~~g~~ir~~l~~ 81 (227)
T 3v9p_A 33 IDGAGKTTHLQWFCDRLQERLGPAGRHVV-VTREPGGTRLGETLREILLN 81 (227)
T ss_dssp CC---CHHHHHHHHHHHHHHHGGGTCCEE-EEESSSSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhhccccceeee-eecCCCCChHHHHHHHHHHc
Confidence 36999999999999886542 024443 22222222234555555543
No 273
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=79.76 E-value=3.6 Score=35.06 Aligned_cols=48 Identities=29% Similarity=0.333 Sum_probs=29.5
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeC-CCCCHHHHHHHHHHHhCCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVS-QNPNIKKIQGEIAFKLGLK 51 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~-~~~~~~~l~~~i~~~l~~~ 51 (283)
.|+|||||++.++......+ . .+.++... ......+-+....+.++.+
T Consensus 138 nGaGKTTll~~Lag~l~~~~-g-~V~l~g~D~~r~~a~eql~~~~~~~gv~ 186 (328)
T 3e70_C 138 NGSGKTTTIAKLANWLKNHG-F-SVVIAASDTFRAGAIEQLEEHAKRIGVK 186 (328)
T ss_dssp TTSSHHHHHHHHHHHHHHTT-C-CEEEEEECCSSTTHHHHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHHHHHhcC-C-EEEEEeecccccchHHHHHHHHHHcCce
Confidence 59999999999988765431 1 23444332 2234455566667777753
No 274
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=79.74 E-value=0.78 Score=34.93 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 16 ~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 16 PNVGKSTIFNALTGE 30 (188)
T ss_dssp TTSSHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999999874
No 275
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=79.69 E-value=0.84 Score=40.74 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=16.1
Q ss_pred CCCCcHHHHHHHHHhhhcc
Q 041028 1 MGGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (283)
.+|+||||+|+.++.....
T Consensus 58 ppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 58 PTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHcCC
Confidence 3699999999999997653
No 276
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=79.64 E-value=0.8 Score=33.85 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 13 ~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 13 GGVGKSALTLQFMYDE 28 (168)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHhCc
Confidence 6999999999998753
No 277
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=79.37 E-value=0.83 Score=38.58 Aligned_cols=18 Identities=39% Similarity=0.586 Sum_probs=15.6
Q ss_pred CCCcHHHHHHHHHhhhcc
Q 041028 2 GGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (283)
+|+|||||++.++.....
T Consensus 111 nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 111 NGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp TTSSHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHh
Confidence 699999999999987654
No 278
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=79.29 E-value=0.91 Score=36.31 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+||||.|+.++....
T Consensus 38 PGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 38 PGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TTCCHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHC
Confidence 79999999999998764
No 279
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=79.17 E-value=0.85 Score=41.39 Aligned_cols=17 Identities=53% Similarity=0.790 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+||||||+.+++...
T Consensus 73 pGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 73 PGVGKTHLARAVAGEAR 89 (499)
T ss_dssp SSSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 69999999999998764
No 280
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=79.14 E-value=0.89 Score=40.82 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=16.1
Q ss_pred CCCCcHHHHHHHHHhhhcc
Q 041028 1 MGGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (283)
++|+||||+|+.+......
T Consensus 47 lpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 47 LPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 5799999999999887653
No 281
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=79.12 E-value=1.4 Score=37.36 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=19.4
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEe
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEV 31 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v 31 (283)
+|+||||++..++......+ ..++++..
T Consensus 114 ~G~GKTT~~~~LA~~l~~~g--~kVllid~ 141 (320)
T 1zu4_A 114 NGTGKTTSLAKMANYYAELG--YKVLIAAA 141 (320)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHCC--CeEEEEeC
Confidence 79999999999988765431 23445543
No 282
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=79.02 E-value=0.96 Score=38.85 Aligned_cols=17 Identities=47% Similarity=0.522 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
.|+||||||..++....
T Consensus 16 tgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 16 TASGKTELSIEVAKKFN 32 (340)
T ss_dssp TTSSHHHHHHHHHHHTT
T ss_pred CcCcHHHHHHHHHHHcC
Confidence 59999999999998643
No 283
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=79.00 E-value=0.97 Score=33.40 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 9 ~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 9 DAAGKTTILYKLKLGE 24 (164)
T ss_dssp TTSSHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHcCC
Confidence 5999999999997653
No 284
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=78.78 E-value=0.46 Score=38.99 Aligned_cols=16 Identities=19% Similarity=0.221 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|+||||+|+.+.+..
T Consensus 33 ~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 33 IAAGKSTFVNILKQLC 48 (263)
T ss_dssp TTSSHHHHHTTTGGGC
T ss_pred CCCCHHHHHHHHHHhc
Confidence 5999999999988764
No 285
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=78.73 E-value=0.73 Score=35.32 Aligned_cols=28 Identities=25% Similarity=0.194 Sum_probs=18.7
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFT 29 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv 29 (283)
.|+|||||++.+..-....+.-.+.+.+
T Consensus 11 SGsGKSTL~~~L~~~~~~~g~~~G~I~~ 38 (171)
T 2f1r_A 11 SDSGKTTLITRMMPILRERGLRVAVVKR 38 (171)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHhhhcCCceEEEEE
Confidence 5899999999998876543222344443
No 286
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=78.68 E-value=0.85 Score=41.87 Aligned_cols=17 Identities=47% Similarity=0.739 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+||||||+.++....
T Consensus 117 ~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 117 PGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp SSSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcC
Confidence 69999999999998764
No 287
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=78.60 E-value=0.84 Score=34.14 Aligned_cols=15 Identities=53% Similarity=0.674 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 13 ~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 13 PGVGKTSLASLFAGK 27 (175)
T ss_dssp TTSSHHHHHHHHHCC
T ss_pred CCccHHHHHHHHhcC
Confidence 699999999998764
No 288
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=78.60 E-value=1.1 Score=34.77 Aligned_cols=18 Identities=28% Similarity=-0.069 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHhhhcc
Q 041028 2 GGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (283)
.|+||||++..++++...
T Consensus 12 ~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 12 MYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 499999999777766543
No 289
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=78.55 E-value=0.91 Score=33.73 Aligned_cols=15 Identities=33% Similarity=0.740 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 12 ~~~GKssli~~l~~~ 26 (172)
T 2erx_A 12 GGVGKSSLVLRFVKG 26 (172)
T ss_dssp TTSSHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999864
No 290
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=78.28 E-value=0.9 Score=38.95 Aligned_cols=16 Identities=31% Similarity=0.493 Sum_probs=14.1
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|+||||||..++...
T Consensus 49 TgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 49 TGTGKSRLSIDLAAHF 64 (339)
T ss_dssp TTSSHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHC
Confidence 5999999999999854
No 291
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=78.14 E-value=0.93 Score=34.52 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 16 ~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 16 SQCGKTALLHVFAKDC 31 (184)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhcCC
Confidence 6999999999998753
No 292
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=78.09 E-value=0.93 Score=34.70 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 57 ~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 57 QNSGKTSLLTLLTTDS 72 (193)
T ss_dssp TTSSHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHhcCC
Confidence 6999999999998753
No 293
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=78.06 E-value=0.92 Score=37.52 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=21.4
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVS 32 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~ 32 (283)
||+||||+|..++......+ ..++-|+..
T Consensus 92 gG~GKTt~a~nLA~~lA~~G--~rVLLID~D 120 (271)
T 3bfv_A 92 PGAGKSTIAANLAVAYAQAG--YKTLIVDGD 120 (271)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CCCcHHHHHHHHHHHHHhCC--CeEEEEeCC
Confidence 89999999999988765432 246667665
No 294
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=78.02 E-value=0.96 Score=38.52 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=14.4
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
.|+||||||+.+.....
T Consensus 101 sGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 101 VAVGKSTTSRVLKALLS 117 (321)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 59999999999987654
No 295
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=77.93 E-value=0.95 Score=33.64 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 15 ~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 15 GCVGKTSLVLRYCENK 30 (170)
T ss_dssp TTSCHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHcCC
Confidence 6999999999988653
No 296
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=77.92 E-value=1 Score=33.25 Aligned_cols=15 Identities=33% Similarity=0.742 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 12 ~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 12 GGVGKSALTVQFVQG 26 (167)
T ss_dssp TTSSHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999875
No 297
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=77.84 E-value=0.97 Score=33.48 Aligned_cols=16 Identities=13% Similarity=0.389 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 12 ~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 12 AAVGKSSIVLRFVSND 27 (170)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhcCC
Confidence 5999999999988653
No 298
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=77.77 E-value=0.79 Score=36.22 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=14.1
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|+||||||..+..+.
T Consensus 43 sGsGKStLA~~La~~g 58 (205)
T 2qmh_A 43 SGVGKSETALELVQRG 58 (205)
T ss_dssp CTTTTHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHhC
Confidence 5999999999998764
No 299
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=77.76 E-value=1.1 Score=36.01 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
+.|+||||+++.+.....
T Consensus 24 ~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 24 PASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp SSCSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 469999999999988653
No 300
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=77.70 E-value=3.8 Score=36.98 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=33.8
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCC-CHHHHHHHHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNP-NIKKIQGEIAFK 47 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~-~~~~l~~~i~~~ 47 (283)
+|+|||+|+..+.+.... .+-+.++++-+++.. ...++..++...
T Consensus 174 ~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 174 AGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp SSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred CCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 599999999999987532 235788899888765 466777777654
No 301
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=77.68 E-value=1 Score=37.96 Aligned_cols=18 Identities=44% Similarity=0.508 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHhhhcc
Q 041028 2 GGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (283)
.|+|||||++.++.....
T Consensus 109 nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 109 NGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 599999999999987653
No 302
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=77.61 E-value=0.99 Score=33.90 Aligned_cols=15 Identities=33% Similarity=0.740 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 18 ~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 18 GGVGKSALTIQFIQS 32 (181)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999999876
No 303
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=77.59 E-value=1 Score=33.47 Aligned_cols=16 Identities=19% Similarity=0.472 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 15 ~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 15 TGVGKSSIMWRFVEDS 30 (170)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHcCC
Confidence 6999999999998764
No 304
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=77.59 E-value=1.1 Score=33.61 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 15 ~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 15 GASGKTSLTTCFAQE 29 (178)
T ss_dssp TTSSHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999998764
No 305
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=77.46 E-value=1.1 Score=33.03 Aligned_cols=16 Identities=31% Similarity=0.673 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 12 ~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 12 GGVGKSALTVQFVTGT 27 (167)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHcCC
Confidence 6999999999988653
No 306
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=77.45 E-value=1.1 Score=34.31 Aligned_cols=15 Identities=47% Similarity=0.308 Sum_probs=12.5
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||.+.+.+.
T Consensus 23 ~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 23 GLSGKTTNLKWIYSK 37 (198)
T ss_dssp TTSSHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhh
Confidence 699999999877654
No 307
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=77.40 E-value=0.72 Score=39.49 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
-|+||||+++.+.+...
T Consensus 13 dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 13 HGMGKTTTTQLLVALGS 29 (331)
T ss_dssp TTSSHHHHHHHHTC---
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 39999999999987655
No 308
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=77.36 E-value=1.1 Score=34.55 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+||||||.++..+
T Consensus 25 SGaGKStlal~L~~r 39 (181)
T 3tqf_A 25 ANIGKSELSLALIDR 39 (181)
T ss_dssp SSSSHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHc
Confidence 699999999999875
No 309
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=77.35 E-value=3.7 Score=36.85 Aligned_cols=45 Identities=22% Similarity=0.258 Sum_probs=33.4
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCC-CHHHHHHHHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNP-NIKKIQGEIAFK 47 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~-~~~~l~~~i~~~ 47 (283)
+|+|||+|+..+.+.... .+-+.++++-+++.. .+.++.+++...
T Consensus 162 ~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 162 AGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp TTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 599999999999887532 234778888888765 456777777654
No 310
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=77.34 E-value=1 Score=37.95 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
.|+|||||++.+.....
T Consensus 89 ~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 89 VAVGKSTTARVLQALLS 105 (308)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 59999999999988654
No 311
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=77.33 E-value=2.4 Score=35.51 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=24.2
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCC-CCCHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQ-NPNIK 38 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~-~~~~~ 38 (283)
||+||||+|..++......+ ..++-|+... ..++.
T Consensus 114 gG~GKTtva~nLA~~lA~~G--~rVLLID~D~r~~~l~ 149 (299)
T 3cio_A 114 PDSGKTFVSSTLAAVIAQSD--QKVLFIDADLRRGYSH 149 (299)
T ss_dssp SSSCHHHHHHHHHHHHHHTT--CCEEEEECCTTTCCHH
T ss_pred CCCChHHHHHHHHHHHHhCC--CcEEEEECCCCCccHH
Confidence 79999999999988765432 2466677664 34443
No 312
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=77.23 E-value=1.2 Score=35.10 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
+.|+||||+|+.+.....
T Consensus 11 ~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 11 PAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CTTSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 469999999999988643
No 313
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=77.16 E-value=1 Score=33.81 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 17 ~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 17 SGVGKTSLMHRYVNDK 32 (182)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHhCc
Confidence 6999999999988753
No 314
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=77.04 E-value=1.1 Score=35.22 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 21 ~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 21 QNSGKTSLLTLLTTDS 36 (218)
T ss_dssp TTSSHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHhcCC
Confidence 6999999999998754
No 315
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=76.92 E-value=1.1 Score=34.42 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 30 ~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 30 RGAGKSALTVKFLTKR 45 (187)
T ss_dssp TTSSHHHHHHHHHHSS
T ss_pred CCCcHHHHHHHHHhCC
Confidence 6999999999988753
No 316
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=76.91 E-value=1.1 Score=34.21 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 29 ~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 29 LSSGKSALVHRYLTG 43 (184)
T ss_dssp TTSCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999887765
No 317
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=76.81 E-value=1.1 Score=34.36 Aligned_cols=15 Identities=33% Similarity=0.404 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 32 ~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 32 DNAGKTTLLHMLKND 46 (190)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999874
No 318
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=76.69 E-value=1.1 Score=41.74 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHhhh
Q 041028 1 MGGIGKTTLAKEVARKA 17 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (283)
+.|+||||+|+.+....
T Consensus 60 lsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 60 LSGAGKTTVSMALEEYL 76 (630)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 57999999999999876
No 319
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=76.66 E-value=1.2 Score=32.99 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 15 ~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 15 SAVGKSSLVLRFVKG 29 (170)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcC
Confidence 599999999998864
No 320
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=76.64 E-value=0.93 Score=39.46 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
-|+||||+++.+.+...
T Consensus 58 dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 58 HGMGKTTTTQLLVALGS 74 (376)
T ss_dssp TTSSHHHHHHHHHC---
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 39999999999988765
No 321
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=76.64 E-value=1.1 Score=33.85 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+...
T Consensus 13 ~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 13 PNAGKSSLLNALAGR 27 (172)
T ss_dssp TTSSHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999999875
No 322
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=76.61 E-value=1.1 Score=33.27 Aligned_cols=14 Identities=36% Similarity=0.620 Sum_probs=12.3
Q ss_pred CCCcHHHHHHHHHh
Q 041028 2 GGIGKTTLAKEVAR 15 (283)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (283)
+|+|||||...+.+
T Consensus 11 ~~~GKSsli~~l~~ 24 (166)
T 3q72_A 11 PGVGKSALARIFGG 24 (166)
T ss_dssp TTSSHHHHHHHHCC
T ss_pred CCCCHHHHHHHHcC
Confidence 69999999999864
No 323
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=76.49 E-value=1.2 Score=33.35 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 24 ~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 24 MGVGKSCLLHQFTEKK 39 (179)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHcCC
Confidence 6999999999998754
No 324
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=76.48 E-value=3.6 Score=34.24 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=25.3
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCC-CCHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQN-PNIKKI 40 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~-~~~~~l 40 (283)
||+||||+|..++......+ ..++-|+..-. .++...
T Consensus 102 gG~GKTtva~nLA~~lA~~G--~rVLLID~D~~~~~l~~~ 139 (286)
T 3la6_A 102 PSIGMTFVCANLAAVISQTN--KRVLLIDCDMRKGYTHEL 139 (286)
T ss_dssp SSSSHHHHHHHHHHHHHTTT--CCEEEEECCTTTCCHHHH
T ss_pred CCCcHHHHHHHHHHHHHhCC--CCEEEEeccCCCCCHHHH
Confidence 89999999999988765432 25677776533 444433
No 325
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=76.45 E-value=1 Score=34.31 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 32 ~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 32 SNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTSSHHHHHHHHHTSC
T ss_pred CCCCHHHHHHHHHcCc
Confidence 6999999999998764
No 326
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=76.43 E-value=1.1 Score=33.54 Aligned_cols=15 Identities=33% Similarity=0.738 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 16 ~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 16 GGVGKSSLMNRYVTN 30 (177)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999865
No 327
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=76.40 E-value=1.1 Score=34.13 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 10 ~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 10 SNVGKSTLIYRLTGK 24 (190)
T ss_dssp TTSSHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhCc
Confidence 699999999998875
No 328
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=76.39 E-value=1.1 Score=36.34 Aligned_cols=25 Identities=24% Similarity=0.141 Sum_probs=18.4
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFT 29 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv 29 (283)
.|.|||||.+.++.-... ..+.+++
T Consensus 33 nGsGKSTLl~~l~Gl~~p---~~G~i~~ 57 (240)
T 2onk_A 33 TGAGKSVFLELIAGIVKP---DRGEVRL 57 (240)
T ss_dssp TTSSHHHHHHHHHTSSCC---SEEEEEE
T ss_pred CCCCHHHHHHHHhCCCCC---CceEEEE
Confidence 599999999999875432 3466655
No 329
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=76.36 E-value=1.1 Score=33.84 Aligned_cols=15 Identities=40% Similarity=0.775 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 27 ~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 27 GGVGKSALTIQFFQK 41 (183)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999999875
No 330
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=76.35 E-value=1 Score=34.45 Aligned_cols=15 Identities=13% Similarity=0.510 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 32 ~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 32 SNVGKSSFINSLINR 46 (195)
T ss_dssp TTSSHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999999865
No 331
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=76.26 E-value=1.1 Score=33.58 Aligned_cols=15 Identities=33% Similarity=0.355 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 17 ~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 17 VDHGKTTLLDAIRHS 31 (178)
T ss_dssp TTTTHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999999864
No 332
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=76.18 E-value=1.1 Score=33.86 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 19 ~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 19 AGTGKSCLLHQFIEKK 34 (186)
T ss_dssp TTSSHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHcCC
Confidence 6999999999998753
No 333
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=76.17 E-value=1.2 Score=40.38 Aligned_cols=16 Identities=44% Similarity=0.650 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||+||+.+++..
T Consensus 247 pGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 247 PGTGKTLIARAVANET 262 (489)
T ss_dssp TTSSHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHh
Confidence 6999999999998875
No 334
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=76.17 E-value=1.3 Score=34.76 Aligned_cols=19 Identities=26% Similarity=0.197 Sum_probs=16.5
Q ss_pred CCCCcHHHHHHHHHhhhcc
Q 041028 1 MGGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (283)
+.|+||||+|+.++.....
T Consensus 14 ~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 14 EFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHhCc
Confidence 4699999999999998764
No 335
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=76.16 E-value=1.1 Score=33.13 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 12 ~~~GKssli~~l~~~ 26 (170)
T 1g16_A 12 SGVGKSCLLVRFVED 26 (170)
T ss_dssp TTSSHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999998864
No 336
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=76.16 E-value=1.1 Score=33.32 Aligned_cols=14 Identities=43% Similarity=0.684 Sum_probs=12.3
Q ss_pred CCCcHHHHHHHHHh
Q 041028 2 GGIGKTTLAKEVAR 15 (283)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (283)
+|+|||||...+.+
T Consensus 11 ~~~GKSsli~~l~~ 24 (169)
T 3q85_A 11 SGVGKSTLAGTFGG 24 (169)
T ss_dssp TTSSHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999864
No 337
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=76.14 E-value=1.1 Score=33.86 Aligned_cols=16 Identities=25% Similarity=0.592 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 13 ~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 13 DGVGKSALTIQLIQNH 28 (189)
T ss_dssp TTSSHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHhCC
Confidence 6999999999998754
No 338
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=76.06 E-value=1.2 Score=33.72 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 27 ~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 27 GGVGKSALTLQFMYDE 42 (187)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhhCC
Confidence 6999999999998753
No 339
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=76.02 E-value=1.2 Score=41.14 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHhhhc
Q 041028 1 MGGIGKTTLAKEVARKAK 18 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (283)
++|+||||+|+.+.....
T Consensus 404 lsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 404 YMNSGKDAIARALQVTLN 421 (573)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 579999999999998765
No 340
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=75.95 E-value=1.3 Score=32.96 Aligned_cols=15 Identities=33% Similarity=0.426 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 16 ~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 16 DGAGKTTILYRLQVG 30 (171)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 599999999999764
No 341
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=75.94 E-value=0.96 Score=36.25 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=18.2
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFT 29 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv 29 (283)
.|.|||||.+.++.-.. ...+.+++
T Consensus 39 nGsGKSTLl~~l~Gl~~---p~~G~i~~ 63 (224)
T 2pcj_A 39 SGSGKSTLLYILGLLDA---PTEGKVFL 63 (224)
T ss_dssp TTSCHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCCHHHHHHHHhcCCC---CCceEEEE
Confidence 59999999999987543 23566655
No 342
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=75.93 E-value=0.96 Score=34.07 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 16 ~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 16 ARSGKSSLIHRFLTG 30 (178)
T ss_dssp GGGCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 589999999998875
No 343
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=75.92 E-value=0.86 Score=36.14 Aligned_cols=15 Identities=47% Similarity=0.465 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
.|.|||||.+.++.-
T Consensus 31 nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 31 AGSGKTYLAMAKAVQ 45 (208)
T ss_dssp TTSSTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcC
Confidence 599999999999875
No 344
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=75.76 E-value=1.3 Score=34.11 Aligned_cols=15 Identities=47% Similarity=0.596 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|||||||...+...
T Consensus 15 ~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 15 QGVGKSTLANIFAGV 29 (192)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999998753
No 345
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=75.70 E-value=1.3 Score=33.67 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 20 ~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 20 SGVGKTSVLYQYTDGK 35 (195)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhcCC
Confidence 5999999999998753
No 346
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=75.63 E-value=1.3 Score=37.52 Aligned_cols=16 Identities=38% Similarity=0.397 Sum_probs=14.1
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|+||||||..++...
T Consensus 19 tgsGKt~la~~La~~~ 34 (316)
T 3foz_A 19 TASGKTALAIELRKIL 34 (316)
T ss_dssp TTSCHHHHHHHHHHHS
T ss_pred CccCHHHHHHHHHHhC
Confidence 5999999999999864
No 347
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=75.58 E-value=0.69 Score=37.11 Aligned_cols=15 Identities=33% Similarity=0.352 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
.|+|||||++.+...
T Consensus 29 ~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 29 IGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTSCHHHHHHTTGGG
T ss_pred CCCCHHHHHHHHHhc
Confidence 599999999998875
No 348
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=75.40 E-value=1.2 Score=33.26 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
.|+|||||...+.+.
T Consensus 23 ~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 23 QSVGKTSLITRFMYD 37 (179)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999864
No 349
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=75.39 E-value=0.75 Score=36.79 Aligned_cols=16 Identities=38% Similarity=0.652 Sum_probs=8.2
Q ss_pred CCCcHHHHHHHHH-hhh
Q 041028 2 GGIGKTTLAKEVA-RKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~-~~~ 17 (283)
.|+|||||++.+. ...
T Consensus 36 ~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 36 SGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CC----CHHHHHHC---
T ss_pred CCCCHHHHHHHHHhcCC
Confidence 5999999999998 643
No 350
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=75.36 E-value=1.2 Score=36.28 Aligned_cols=15 Identities=47% Similarity=0.638 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
.|.|||||.+.++.-
T Consensus 38 nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 38 NGAGKSTLGKILAGD 52 (250)
T ss_dssp TTSSHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHhCC
Confidence 599999999999884
No 351
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=75.35 E-value=0.95 Score=43.56 Aligned_cols=17 Identities=41% Similarity=0.591 Sum_probs=15.3
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||+||+++++...
T Consensus 247 PGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 247 PGTGKTLIARAVANETG 263 (806)
T ss_dssp TTSCHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 69999999999998765
No 352
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=75.30 E-value=0.93 Score=40.31 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=26.6
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeC-CCCCHHHHHHHHHHHhCCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVS-QNPNIKKIQGEIAFKLGLK 51 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~-~~~~~~~l~~~i~~~l~~~ 51 (283)
+|+||||+|..++.....++ + .++.|+.. +.+...+.++......+.+
T Consensus 108 ~GvGKTTla~~La~~l~~~G-~-kVllv~~D~~r~~a~~qL~~~~~~~gv~ 156 (432)
T 2v3c_C 108 QGSGKTTTAAKLARYIQKRG-L-KPALIAADTYRPAAYEQLKQLAEKIHVP 156 (432)
T ss_dssp SSSSTTHHHHHHHHHHHHHH-C-CEEEECCSCCCTTGGGSSHHHHHHSSCC
T ss_pred CCCCHHHHHHHHHHHHHHcC-C-eEEEEeccccCchHHHHHHHhhhccCcc
Confidence 79999999999988754321 1 34455443 2222223334444554443
No 353
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=75.28 E-value=1.2 Score=33.54 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 14 ~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 14 GAVGKTCLLISYTTN 28 (186)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcC
Confidence 599999999998865
No 354
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=75.24 E-value=1.2 Score=34.20 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 37 ~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 37 AGVGKSALVVRFLTK 51 (196)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999999875
No 355
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=75.10 E-value=1.7 Score=35.64 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=14.3
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
.|+|||||.+.+.....
T Consensus 34 ~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 34 TGSGKSTTIASMIDYIN 50 (261)
T ss_dssp TTCSHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhCC
Confidence 59999999999887643
No 356
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=74.95 E-value=1.3 Score=33.36 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 21 ~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 21 VGAGKSSLVLRFVKD 35 (181)
T ss_dssp TTSCHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999998875
No 357
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=74.92 E-value=1.4 Score=33.64 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 32 ~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 32 SSVGKTSFLFRYADDT 47 (191)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHhcCC
Confidence 6999999999998754
No 358
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=74.86 E-value=1.3 Score=33.34 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 17 ~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 17 GAVGKTCLLISYTSN 31 (182)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999998864
No 359
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=74.76 E-value=1.3 Score=33.38 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 15 ~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 15 RSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp TTSSHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHcCC
Confidence 6999999999998643
No 360
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=74.67 E-value=1.3 Score=37.53 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|+||||||..++...
T Consensus 12 tgsGKt~la~~La~~~ 27 (322)
T 3exa_A 12 TAVGKTKTSVMLAKRL 27 (322)
T ss_dssp TTSCHHHHHHHHHHTT
T ss_pred CcCCHHHHHHHHHHhC
Confidence 5999999999998754
No 361
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=74.63 E-value=1.3 Score=35.23 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|||||+|...+.+.
T Consensus 22 ~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 22 QSVGKTSLITRFMYD 36 (216)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHhC
Confidence 699999999998764
No 362
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=74.60 E-value=1.3 Score=34.57 Aligned_cols=16 Identities=25% Similarity=0.144 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 16 ~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 16 CDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhCCC
Confidence 6999999999998753
No 363
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=74.48 E-value=1.3 Score=36.50 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=18.0
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFT 29 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv 29 (283)
.|.|||||.+.++.-.... ...+.+++
T Consensus 55 NGsGKSTLlk~l~Gl~~~~-p~~G~I~~ 81 (267)
T 2zu0_C 55 NGSGKSTLSATLAGREDYE-VTGGTVEF 81 (267)
T ss_dssp TTSSHHHHHHHHHTCTTCE-EEEEEEEE
T ss_pred CCCCHHHHHHHHhCCCCCC-CCCeEEEE
Confidence 5999999999998852110 12466655
No 364
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=74.38 E-value=1.5 Score=32.98 Aligned_cols=16 Identities=38% Similarity=0.503 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 19 ~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 19 SGVGKTCLLVRFKDGA 34 (180)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHhCC
Confidence 5999999999988753
No 365
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=74.38 E-value=1.3 Score=34.19 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||.+.+.+.
T Consensus 29 ~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 29 RRSGKSSIQKVVFHK 43 (196)
T ss_dssp TTSSHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHhc
Confidence 699999999987764
No 366
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=74.31 E-value=1.5 Score=33.61 Aligned_cols=16 Identities=38% Similarity=0.675 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 34 ~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 34 SGVGKTNLLSRFTRNE 49 (193)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhcCC
Confidence 5999999999988753
No 367
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=74.26 E-value=1.3 Score=37.16 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=12.6
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
.|+|||||.+.++..
T Consensus 27 nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 27 SGLGKSTLINSLFLT 41 (301)
T ss_dssp TTSSHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHhCC
Confidence 599999999998754
No 368
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=74.19 E-value=1.3 Score=35.79 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=18.4
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFT 29 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv 29 (283)
.|.|||||.+.+..-... ..+.+++
T Consensus 40 nGsGKSTLl~~l~Gl~~p---~~G~I~~ 64 (235)
T 3tif_A 40 SGSGKSTMLNIIGCLDKP---TEGEVYI 64 (235)
T ss_dssp TTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred CCCcHHHHHHHHhcCCCC---CceEEEE
Confidence 599999999999875432 3566665
No 369
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=74.11 E-value=1.1 Score=36.17 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|.|||||.+.++.-.
T Consensus 40 nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 40 VGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTSSHHHHHHHHTTCS
T ss_pred CCCCHHHHHHHHhcCC
Confidence 5999999999998754
No 370
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=74.10 E-value=1.5 Score=34.22 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 35 ~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 35 AGVGKTCLVRRFTQG 49 (201)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999998765
No 371
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=74.08 E-value=1.5 Score=33.94 Aligned_cols=16 Identities=31% Similarity=0.462 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 33 ~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 33 RCVGKTSLAHQFVEGE 48 (201)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCcCHHHHHHHHHhCC
Confidence 6999999999998754
No 372
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=74.07 E-value=1.3 Score=34.29 Aligned_cols=14 Identities=36% Similarity=0.406 Sum_probs=12.5
Q ss_pred CCCcHHHHHHHHHh
Q 041028 2 GGIGKTTLAKEVAR 15 (283)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (283)
+|+|||||...+.+
T Consensus 34 ~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 34 DNAGKTTLLHMLKD 47 (198)
T ss_dssp TTSSHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhc
Confidence 69999999999865
No 373
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=74.01 E-value=1.4 Score=34.48 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 37 ~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 37 SQCGKTALLHVFAKDC 52 (205)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhcCC
Confidence 6999999999998753
No 374
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=74.00 E-value=1.5 Score=37.81 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||||+..+.....
T Consensus 88 ~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 88 PGVGKSTAIEALGMHLI 104 (355)
T ss_dssp TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 79999999999987654
No 375
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=73.95 E-value=1.5 Score=38.03 Aligned_cols=18 Identities=44% Similarity=0.508 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHhhhcc
Q 041028 2 GGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (283)
.|+|||||++.++.....
T Consensus 166 nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 166 NGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHhhccc
Confidence 599999999999987654
No 376
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=73.90 E-value=1.4 Score=33.98 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 23 ~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 23 GGVGKSALTLQFMYDE 38 (206)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHhCC
Confidence 5999999999988653
No 377
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=73.77 E-value=1.4 Score=34.03 Aligned_cols=16 Identities=38% Similarity=0.663 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 17 ~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 17 SGVGKTSLMNQYVNKK 32 (207)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHcCC
Confidence 6999999999988753
No 378
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=73.77 E-value=1.4 Score=33.55 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
.|.|||||+.+++--
T Consensus 35 NGsGKStll~ai~~~ 49 (182)
T 3kta_A 35 NGSGKSNIGDAILFV 49 (182)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 499999999998753
No 379
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=73.76 E-value=1.1 Score=41.17 Aligned_cols=19 Identities=37% Similarity=0.641 Sum_probs=16.2
Q ss_pred CCCCcHHHHHHHHHhhhcc
Q 041028 1 MGGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (283)
+.|+|||||++.++.....
T Consensus 377 ~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 377 LSGAGKSTLARALAARLME 395 (552)
T ss_dssp SSCHHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHhhcc
Confidence 4799999999999987653
No 380
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=73.73 E-value=1.2 Score=35.50 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=18.1
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFT 29 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv 29 (283)
.|.|||||.+.++.-... ..+.+++
T Consensus 44 NGsGKSTLlk~l~Gl~~p---~~G~I~~ 68 (214)
T 1sgw_A 44 NGIGKTTLLKTISTYLKP---LKGEIIY 68 (214)
T ss_dssp TTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred CCCCHHHHHHHHhcCCCC---CCeEEEE
Confidence 599999999999875432 3466655
No 381
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=73.54 E-value=1.4 Score=33.51 Aligned_cols=15 Identities=47% Similarity=0.609 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 25 ~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 25 DNAGKTTLLKQLASE 39 (181)
T ss_dssp TTSSHHHHHHHHCCS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999998764
No 382
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=73.49 E-value=1.2 Score=36.08 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=18.4
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFT 29 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv 29 (283)
.|.|||||.+.++.-.. ...+.+++
T Consensus 41 nGsGKSTLl~~l~Gl~~---p~~G~i~~ 65 (240)
T 1ji0_A 41 NGAGKTTTLSAIAGLVR---AQKGKIIF 65 (240)
T ss_dssp TTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCCHHHHHHHHhCCCC---CCCceEEE
Confidence 59999999999987543 23566665
No 383
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=73.35 E-value=1.2 Score=36.63 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=18.3
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFT 29 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv 29 (283)
.|.|||||.+.++.-.. ...+.+++
T Consensus 41 nGsGKSTLlk~l~Gl~~---p~~G~i~~ 65 (262)
T 1b0u_A 41 SGSGKSTFLRCINFLEK---PSEGAIIV 65 (262)
T ss_dssp TTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCCHHHHHHHHhcCCC---CCCcEEEE
Confidence 59999999999987543 23566665
No 384
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=73.35 E-value=1.5 Score=33.64 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 32 ~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 32 GAVGKTCLLLAFSKGE 47 (194)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhcCC
Confidence 6999999999998754
No 385
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=73.31 E-value=1.4 Score=38.11 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
.|.|||||++.+.....
T Consensus 179 nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 179 ESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp TTSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 59999999999988654
No 386
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=73.25 E-value=1.5 Score=36.17 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
.|+|||||.+.++....
T Consensus 11 nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 11 SGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp SSSSHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHhCCCC
Confidence 59999999999998643
No 387
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=73.16 E-value=1.7 Score=41.94 Aligned_cols=18 Identities=44% Similarity=0.615 Sum_probs=15.8
Q ss_pred CCCcHHHHHHHHHhhhcc
Q 041028 2 GGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (283)
+|+||||||+.+++....
T Consensus 520 pGtGKT~Lakala~~~~~ 537 (806)
T 1ypw_A 520 PGCGKTLLAKAIANECQA 537 (806)
T ss_dssp TTSSHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHhCC
Confidence 699999999999998653
No 388
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=73.16 E-value=1.5 Score=33.52 Aligned_cols=16 Identities=13% Similarity=0.503 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 16 ~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 16 SSVGKSSIVLRLTKDT 31 (208)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHhCc
Confidence 5999999999998763
No 389
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=73.06 E-value=1.5 Score=33.41 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 31 ~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 31 SSVGKTSFLFRYADDS 46 (189)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHcCC
Confidence 5999999999998753
No 390
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=73.06 E-value=0.71 Score=38.66 Aligned_cols=16 Identities=19% Similarity=0.329 Sum_probs=11.1
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|+||||+|+.+.+..
T Consensus 14 sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 14 SGAGTSTVKHTFDQIF 29 (290)
T ss_dssp C---CCTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5999999999998754
No 391
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=73.05 E-value=1.5 Score=33.18 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 30 ~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 30 DNAGKTTILYQFSMN 44 (181)
T ss_dssp TTSSHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhcC
Confidence 599999999999864
No 392
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=73.02 E-value=1.5 Score=38.16 Aligned_cols=16 Identities=38% Similarity=0.293 Sum_probs=14.1
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|.|||||++.++...
T Consensus 178 ~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 178 IDSGKTTLAAALLELC 193 (377)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhc
Confidence 6999999999999754
No 393
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=73.00 E-value=1.5 Score=33.61 Aligned_cols=16 Identities=19% Similarity=0.486 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 32 ~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 32 TGVGKSSIVCRFVQDH 47 (192)
T ss_dssp TTSSHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHhcCC
Confidence 6999999999998754
No 394
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=72.94 E-value=1.6 Score=33.31 Aligned_cols=15 Identities=33% Similarity=0.565 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 30 ~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 30 TGVGKSCLLLQFTDK 44 (191)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999998865
No 395
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=72.90 E-value=1.3 Score=36.64 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=18.4
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFT 29 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv 29 (283)
.|.|||||++.+..-... ..+.+++
T Consensus 46 nGsGKSTLl~~l~Gl~~p---~~G~I~~ 70 (266)
T 4g1u_C 46 NGAGKSTLLRLLTGYLSP---SHGECHL 70 (266)
T ss_dssp TTSCHHHHHHHHTSSSCC---SSCEEEE
T ss_pred CCCcHHHHHHHHhcCCCC---CCcEEEE
Confidence 599999999999875432 3566655
No 396
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=72.73 E-value=1.7 Score=33.20 Aligned_cols=16 Identities=31% Similarity=0.272 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 31 ~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 31 QYSGKTTFVNVIASGQ 46 (188)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHcCC
Confidence 5999999999998653
No 397
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=72.69 E-value=1.3 Score=36.33 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=18.3
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFT 29 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv 29 (283)
.|.|||||.+.++.-... ..+.+++
T Consensus 42 nGsGKSTLlk~l~Gl~~p---~~G~i~~ 66 (257)
T 1g6h_A 42 NGSGKSTLINVITGFLKA---DEGRVYF 66 (257)
T ss_dssp TTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred CCCCHHHHHHHHhCCCCC---CCcEEEE
Confidence 599999999999875432 3466665
No 398
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=72.66 E-value=1.2 Score=34.42 Aligned_cols=13 Identities=46% Similarity=0.762 Sum_probs=11.7
Q ss_pred CCCcHHHHHHHHH
Q 041028 2 GGIGKTTLAKEVA 14 (283)
Q Consensus 2 gGiGKTtLA~~v~ 14 (283)
+|+|||||...+.
T Consensus 32 ~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 32 SGVGKSTLAGTFG 44 (195)
T ss_dssp TTSSHHHHHHHTC
T ss_pred CCCCHHHHHHHHH
Confidence 6999999999985
No 399
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=72.66 E-value=1.3 Score=35.95 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=17.7
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFT 29 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv 29 (283)
.|.|||||.+.++.-... ..+.+++
T Consensus 37 nGsGKSTLl~~l~Gl~~p---~~G~i~~ 61 (243)
T 1mv5_A 37 SGGGKSTIFSLLERFYQP---TAGEITI 61 (243)
T ss_dssp TTSSHHHHHHHHTTSSCC---SBSCEEE
T ss_pred CCCCHHHHHHHHhcCCCC---CCcEEEE
Confidence 599999999999875432 3445544
No 400
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=72.58 E-value=1.5 Score=40.70 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+||||||+.++....
T Consensus 69 ~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 69 PGTGKSMLGQAMAELLP 85 (604)
T ss_dssp TTSSHHHHHHHHHHTSC
T ss_pred CCCCHHHHHHHHhccCC
Confidence 69999999999998654
No 401
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=72.57 E-value=1.3 Score=36.51 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=18.4
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFT 29 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv 29 (283)
.|.|||||.+.++.-... ..+.+++
T Consensus 59 NGsGKSTLlk~l~Gl~~p---~~G~I~~ 83 (263)
T 2olj_A 59 SGSGKSTFLRCLNLLEDF---DEGEIII 83 (263)
T ss_dssp TTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred CCCcHHHHHHHHHcCCCC---CCcEEEE
Confidence 599999999999875432 3566665
No 402
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=72.55 E-value=1.6 Score=33.69 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 17 ~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 17 SSVGKTSFLFRYADDS 32 (203)
T ss_dssp TTSSHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHhcCC
Confidence 6999999999998753
No 403
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=72.54 E-value=1.6 Score=33.27 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 24 ~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 24 SGVGKSSLLLRFTDDT 39 (195)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHcCC
Confidence 6999999999998753
No 404
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=72.46 E-value=1.5 Score=32.78 Aligned_cols=15 Identities=33% Similarity=0.601 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 18 ~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 18 SGVGKSSLLLRFADN 32 (181)
T ss_dssp TTSCHHHHHHHHCSC
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999998764
No 405
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=72.43 E-value=1.7 Score=33.24 Aligned_cols=15 Identities=33% Similarity=0.740 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 17 ~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 17 GGVGKSSLVLRFVKG 31 (199)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCcHHHHHHHHHcC
Confidence 699999999999874
No 406
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=72.34 E-value=1.6 Score=33.30 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|+|||||...+.+..
T Consensus 25 ~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 25 SGVGKSCLLLRFADDT 40 (196)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHcCC
Confidence 6999999999998754
No 407
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=72.33 E-value=1.6 Score=33.69 Aligned_cols=15 Identities=13% Similarity=0.501 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 37 ~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 37 AAVGKSSFLMRLCKN 51 (199)
T ss_dssp TTSSHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHhC
Confidence 599999999998764
No 408
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=72.23 E-value=1.3 Score=36.01 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=18.5
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFT 29 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv 29 (283)
.|.|||||.+.++.-... ..+.+++
T Consensus 44 nGsGKSTLl~~l~Gl~~p---~~G~I~i 68 (247)
T 2ff7_A 44 SGSGKSTLTKLIQRFYIP---ENGQVLI 68 (247)
T ss_dssp TTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred CCCCHHHHHHHHhcCCCC---CCcEEEE
Confidence 599999999999875432 3566665
No 409
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=72.21 E-value=1.3 Score=42.25 Aligned_cols=16 Identities=38% Similarity=0.688 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||++|+.+++..
T Consensus 210 pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 210 PGVGKTAIAEGLAQQI 225 (758)
T ss_dssp TTTTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6999999999999875
No 410
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=72.14 E-value=1.4 Score=35.48 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.3
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
.|.|||||.+.++.-..
T Consensus 43 nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 43 TGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTSSHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHhCCCc
Confidence 59999999999987543
No 411
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=72.13 E-value=1.3 Score=36.70 Aligned_cols=25 Identities=24% Similarity=0.289 Sum_probs=18.4
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFT 29 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv 29 (283)
.|.|||||.+.+..-.. ...+.+++
T Consensus 43 nGsGKSTLl~~l~Gl~~---p~~G~I~~ 67 (275)
T 3gfo_A 43 NGVGKSTLFQNFNGILK---PSSGRILF 67 (275)
T ss_dssp TTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCCHHHHHHHHHcCCC---CCCeEEEE
Confidence 59999999999987543 24566655
No 412
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=71.95 E-value=1.7 Score=33.11 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 25 ~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 25 DNAGKTTILYQFSMN 39 (187)
T ss_dssp TTSSHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999854
No 413
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=71.95 E-value=1.4 Score=36.03 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=17.6
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFT 29 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv 29 (283)
.|.|||||.+.++.-... . +.+++
T Consensus 35 NGsGKSTLlk~l~Gl~~p---~-G~i~~ 58 (249)
T 2qi9_C 35 NGAGKSTLLARMAGMTSG---K-GSIQF 58 (249)
T ss_dssp TTSSHHHHHHHHTTSSCC---E-EEEEE
T ss_pred CCCcHHHHHHHHhCCCCC---C-eEEEE
Confidence 599999999999875431 2 66555
No 414
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=71.91 E-value=1.4 Score=36.19 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=18.4
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFT 29 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv 29 (283)
.|.|||||.+.++.-.. ...+.+++
T Consensus 50 NGsGKSTLlk~l~Gl~~---p~~G~I~~ 74 (256)
T 1vpl_A 50 NGAGKTTTLRIISTLIK---PSSGIVTV 74 (256)
T ss_dssp TTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCCHHHHHHHHhcCCC---CCceEEEE
Confidence 59999999999987543 23566665
No 415
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=71.90 E-value=1.4 Score=36.37 Aligned_cols=25 Identities=32% Similarity=0.227 Sum_probs=18.4
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFT 29 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv 29 (283)
.|.|||||.+.++.-.. ...+.+++
T Consensus 42 nGsGKSTLl~~i~Gl~~---p~~G~I~~ 66 (266)
T 2yz2_A 42 TGSGKSTLLQIVAGLIE---PTSGDVLY 66 (266)
T ss_dssp TTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCcHHHHHHHHhCCCC---CCCcEEEE
Confidence 59999999999987543 23566665
No 416
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=71.81 E-value=1.6 Score=33.81 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=12.6
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 34 ~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 34 AGTGKSCLLHQFIEN 48 (200)
T ss_dssp TTSSHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999998754
No 417
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=71.80 E-value=1.7 Score=39.28 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=21.3
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCC
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPN 36 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~ 36 (283)
.|+|||||++.++...... .+.+++.-...+.
T Consensus 302 NGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r 333 (503)
T 2yhs_A 302 NGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFR 333 (503)
T ss_dssp TTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTC
T ss_pred CcccHHHHHHHHHHHhhhc---CCeEEEecCcccc
Confidence 5999999999998876532 3445554334444
No 418
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=71.73 E-value=1.8 Score=32.94 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 29 ~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 29 SNVGKTCLTYRFCAG 43 (189)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcC
Confidence 599999999998865
No 419
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=71.69 E-value=1.8 Score=33.48 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 17 ~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 17 SGVGKSCLLLRFSDDT 32 (206)
T ss_dssp TTSSHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHhcCC
Confidence 5999999999998753
No 420
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=71.65 E-value=1.6 Score=33.61 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 29 ~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 29 GAVGKTSLVVSYTTN 43 (201)
T ss_dssp TTSSHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999998865
No 421
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=71.59 E-value=1.7 Score=34.29 Aligned_cols=14 Identities=50% Similarity=0.679 Sum_probs=12.4
Q ss_pred CCCcHHHHHHHHHh
Q 041028 2 GGIGKTTLAKEVAR 15 (283)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (283)
+|||||||...+..
T Consensus 46 ~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 46 QGVGKSTLANIFAG 59 (211)
T ss_dssp TTSSHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999874
No 422
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=71.58 E-value=2.9 Score=37.29 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=16.1
Q ss_pred CCCcHHHHHHHHHhhhccC
Q 041028 2 GGIGKTTLAKEVARKAKNG 20 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (283)
+|+||||++.++.......
T Consensus 54 aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 54 AGTGATTLTKFIIEALIST 72 (459)
T ss_dssp TTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 6999999999998876544
No 423
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=71.43 E-value=1.7 Score=33.79 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 18 ~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 18 GAVGKTCMLICYTSN 32 (212)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999998865
No 424
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=71.40 E-value=1.4 Score=36.14 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=17.9
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFT 29 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv 29 (283)
.|.|||||.+.+..-.. ..+.+++
T Consensus 55 nGsGKSTLl~~l~Gl~~----~~G~I~i 78 (260)
T 2ghi_A 55 TGSGKSTIAKLLYRFYD----AEGDIKI 78 (260)
T ss_dssp TTSSHHHHHHHHTTSSC----CEEEEEE
T ss_pred CCCCHHHHHHHHhccCC----CCeEEEE
Confidence 59999999999987543 2466665
No 425
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=71.37 E-value=1.4 Score=36.40 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=18.6
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFT 29 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv 29 (283)
.|.|||||.+.++.-... ..+.+++
T Consensus 54 nGsGKSTLlk~l~Gl~~p---~~G~I~~ 78 (271)
T 2ixe_A 54 NGSGKSTVAALLQNLYQP---TGGKVLL 78 (271)
T ss_dssp TTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred CCCCHHHHHHHHhcCCCC---CCCEEEE
Confidence 599999999999875432 3566665
No 426
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=71.31 E-value=1.8 Score=33.15 Aligned_cols=15 Identities=40% Similarity=0.572 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 27 ~~~GKssli~~l~~~ 41 (194)
T 2atx_A 27 GAVGKTCLLMSYAND 41 (194)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999875
No 427
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=71.23 E-value=1.8 Score=33.60 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 38 ~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 38 ASVGKTCVVQRFKTG 52 (201)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhhC
Confidence 699999999998764
No 428
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=71.08 E-value=1.7 Score=34.12 Aligned_cols=15 Identities=47% Similarity=0.589 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 43 ~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 43 GGCGKTSLLMVFADG 57 (214)
T ss_dssp TTSSHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999998764
No 429
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=71.07 E-value=1.9 Score=33.50 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 34 ~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 34 GACGKTCLLIVFSKD 48 (207)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999998875
No 430
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=71.04 E-value=1.5 Score=33.28 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 27 ~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 27 DNAGKTTILKKFNGED 42 (186)
T ss_dssp TTSSHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHhcCC
Confidence 5999999999998654
No 431
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=71.03 E-value=1.5 Score=35.91 Aligned_cols=16 Identities=31% Similarity=0.354 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|.|||||.+.++.-.
T Consensus 40 nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 40 NGCGKSTLLDLLLGIH 55 (253)
T ss_dssp SSSSHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHhCCC
Confidence 5999999999998754
No 432
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=70.98 E-value=1.8 Score=42.07 Aligned_cols=16 Identities=31% Similarity=0.665 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+||||||+.+++..
T Consensus 200 pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 200 PGVGKTAIVEGLAQRI 215 (854)
T ss_dssp TTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6999999999999875
No 433
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=70.92 E-value=1.5 Score=36.50 Aligned_cols=25 Identities=28% Similarity=0.209 Sum_probs=18.4
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFT 29 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv 29 (283)
.|.|||||.+.++.-... ..+.+++
T Consensus 56 NGsGKSTLlk~l~Gl~~p---~~G~I~~ 80 (279)
T 2ihy_A 56 NGAGKTTLLNILNAYEPA---TSGTVNL 80 (279)
T ss_dssp TTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred CCCcHHHHHHHHhCCCCC---CCeEEEE
Confidence 599999999999875432 3466665
No 434
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=70.69 E-value=1.9 Score=33.29 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=20.6
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIAF 46 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~~ 46 (283)
+|+||||+|.+++.. . . .++++.-+..++. +..++|..
T Consensus 8 ~~SGKS~~A~~la~~-~----~-~~~yiaT~~~~d~-e~~~rI~~ 45 (180)
T 1c9k_A 8 ARSGKSRHAEALIGD-A----P-QVLYIATSQILDD-EMAARIQH 45 (180)
T ss_dssp TTSSHHHHHHHHHCS-C----S-SEEEEECCCC-------CHHHH
T ss_pred CCCcHHHHHHHHHhc-C----C-CeEEEecCCCCCH-HHHHHHHH
Confidence 589999999999865 1 1 2455555444432 33344443
No 435
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=70.61 E-value=4.4 Score=36.21 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=30.6
Q ss_pred CCCcHHHHHHHHHhhhccCCCCC----eEEEEEeCCCC-CHHHHHHHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFD----QIVFTEVSQNP-NIKKIQGEIAF 46 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd----~~~wv~v~~~~-~~~~l~~~i~~ 46 (283)
.|+|||+|+..+.+..... -+ .++++-+++.. .+.++.+++..
T Consensus 160 ~G~GKt~L~~~Ia~~~~~~--~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~ 207 (465)
T 3vr4_D 160 SGLPHKELAAQIARQATVL--DSSDDFAVVFAAIGITFEEAEFFMEDFRQ 207 (465)
T ss_dssp TTSCHHHHHHHHHHHCBCS--SCSSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CCcChHHHHHHHHHHHHhc--cCCCceEEEEEEecCCcHHHHHHHHHHhh
Confidence 5999999999999986642 23 66777777654 45666666554
No 436
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=70.16 E-value=1.9 Score=33.30 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 34 ~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 34 GACGKTCLLIVFSKDQ 49 (201)
T ss_dssp TTSSHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHhCc
Confidence 6999999999988753
No 437
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=70.03 E-value=2.1 Score=36.46 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
.|+|||++|+.+++...
T Consensus 33 ~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 33 PGMGDDALIYALSRYLL 49 (334)
T ss_dssp TTSCHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHh
Confidence 59999999999998754
No 438
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=69.99 E-value=1.9 Score=41.66 Aligned_cols=17 Identities=41% Similarity=0.591 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+||||||+.+++...
T Consensus 247 ~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 247 PGTGKTLIARAVANETG 263 (806)
T ss_dssp TTSSHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHcC
Confidence 69999999999988653
No 439
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=69.88 E-value=2.8 Score=39.98 Aligned_cols=16 Identities=44% Similarity=0.704 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||+||+.+++..
T Consensus 530 ~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 530 TGVGKTELARALAESI 545 (758)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 6999999999999876
No 440
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=69.84 E-value=2 Score=36.93 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
.|+|||||.+.+.+...
T Consensus 80 nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 80 SGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TTSSHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhcCCC
Confidence 59999999999999864
No 441
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=69.82 E-value=2 Score=41.06 Aligned_cols=16 Identities=38% Similarity=0.690 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||+||+.+++..
T Consensus 216 ~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 216 SGVGKTAIAEGLAWRI 231 (758)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6999999999999875
No 442
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=69.77 E-value=1.6 Score=35.90 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=18.0
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFT 29 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv 29 (283)
.|.|||||.+.++.-. . ..+.+++
T Consensus 39 NGsGKSTLlk~l~Gl~-p---~~G~I~~ 62 (263)
T 2pjz_A 39 NGSGKTTLLRAISGLL-P---YSGNIFI 62 (263)
T ss_dssp TTSSHHHHHHHHTTSS-C---CEEEEEE
T ss_pred CCCCHHHHHHHHhCCC-C---CCcEEEE
Confidence 5999999999998754 2 3566655
No 443
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=69.65 E-value=2 Score=33.35 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 29 ~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 29 SGVGKSCLLVRFVED 43 (213)
T ss_dssp TTSSHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHhC
Confidence 599999999998865
No 444
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=69.56 E-value=1.6 Score=32.92 Aligned_cols=14 Identities=36% Similarity=0.472 Sum_probs=12.2
Q ss_pred CCCcHHHHHHHHHh
Q 041028 2 GGIGKTTLAKEVAR 15 (283)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (283)
+|+|||||...+.+
T Consensus 27 ~~~GKssli~~l~~ 40 (183)
T 1moz_A 27 DGAGKTTILYRLQI 40 (183)
T ss_dssp TTSSHHHHHHHTCC
T ss_pred CCCCHHHHHHHHhc
Confidence 59999999998864
No 445
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=69.43 E-value=1.6 Score=34.56 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 38 ~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 38 PNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSSHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999998765
No 446
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=69.41 E-value=2.2 Score=39.20 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHhhhcc
Q 041028 1 MGGIGKTTLAKEVARKAKN 19 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (283)
++|+||||+|+.+......
T Consensus 380 ~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 380 LPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp STTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhh
Confidence 4799999999999887543
No 447
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=69.29 E-value=2.2 Score=37.53 Aligned_cols=16 Identities=38% Similarity=0.650 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|+||||||..++...
T Consensus 11 tgsGKttla~~La~~~ 26 (409)
T 3eph_A 11 TGVGKSQLSIQLAQKF 26 (409)
T ss_dssp SSSSHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHC
Confidence 5999999999999864
No 448
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=69.18 E-value=4.3 Score=35.61 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=22.2
Q ss_pred CCCcHHHHHHHHHhhhccC-CCCCeEEEEEeCCCC
Q 041028 2 GGIGKTTLAKEVARKAKNG-KLFDQIVFTEVSQNP 35 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~-~~Fd~~~wv~v~~~~ 35 (283)
+|+|||||++.+.+..... ..+++ +++-+++..
T Consensus 183 sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~ 216 (422)
T 3ice_A 183 PKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERP 216 (422)
T ss_dssp SSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCH
T ss_pred CCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCCh
Confidence 5999999999998865432 12333 457777654
No 449
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=69.14 E-value=2.2 Score=33.17 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 39 ~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 39 GAVGKTCLLISYTTNA 54 (204)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHhCC
Confidence 6999999999988653
No 450
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=69.09 E-value=2 Score=32.99 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=12.4
Q ss_pred CCCcHHHHHHHHHh
Q 041028 2 GGIGKTTLAKEVAR 15 (283)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (283)
+|+|||||...+.+
T Consensus 38 ~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 38 DAAGKTTILYKLKL 51 (192)
T ss_dssp TTSSHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999865
No 451
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=69.01 E-value=1.7 Score=36.82 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHHhhh
Q 041028 1 MGGIGKTTLAKEVARKA 17 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (283)
+.|.|||||.+.+....
T Consensus 12 ~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 12 FLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp SSSSSCHHHHHHHHHSC
T ss_pred cCCCCHHHHHHHHHhhc
Confidence 36999999999998653
No 452
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=68.89 E-value=2.3 Score=33.40 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 36 ~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 36 VQCGKTAMLQVLAKDC 51 (214)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhcCC
Confidence 6999999999988753
No 453
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=68.75 E-value=2.1 Score=35.17 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+...
T Consensus 12 ~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 12 PNVGKTTIFNALTGL 26 (271)
T ss_dssp SSSSHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999999865
No 454
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=68.74 E-value=1.5 Score=37.63 Aligned_cols=19 Identities=42% Similarity=0.307 Sum_probs=15.3
Q ss_pred CCCcHHHHH-HHHHhhhccC
Q 041028 2 GGIGKTTLA-KEVARKAKNG 20 (283)
Q Consensus 2 gGiGKTtLA-~~v~~~~~~~ 20 (283)
-|+||||++ +.+.+.....
T Consensus 21 ~GaGKTT~~~~~L~~~l~~~ 40 (341)
T 1osn_A 21 YGIGKTTAAEEFLHHFAITP 40 (341)
T ss_dssp SSSCTTHHHHHHHHTTTTSG
T ss_pred CCCCHHHHHHHHHHHHHhhC
Confidence 399999999 9998876543
No 455
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=68.57 E-value=2.2 Score=34.19 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+....
T Consensus 38 ~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 38 TGAGKSATGNSILGRK 53 (239)
T ss_dssp TTSSHHHHHHHHHTSC
T ss_pred CCCCHHHHHHHHcCCC
Confidence 6999999999998753
No 456
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=68.49 E-value=2.3 Score=35.91 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|.|||||++.+..-.
T Consensus 135 sGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 135 PNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SSSSHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhhhc
Confidence 5999999999998765
No 457
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=68.38 E-value=2.1 Score=32.70 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 26 ~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 26 DNSGKTTIINQVKPA 40 (199)
T ss_dssp TTSCHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999998764
No 458
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=68.34 E-value=4.4 Score=35.57 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=21.5
Q ss_pred CCCcHHHHHHHHHhhhccC-CCCCeEEEEEeCCC
Q 041028 2 GGIGKTTLAKEVARKAKNG-KLFDQIVFTEVSQN 34 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~-~~Fd~~~wv~v~~~ 34 (283)
+|+|||+|+..+.+..... ..+.+ +++-+++.
T Consensus 184 ~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 184 PKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp TTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred CCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 5999999999999875432 12333 45666654
No 459
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=68.20 E-value=2.2 Score=32.74 Aligned_cols=15 Identities=33% Similarity=0.629 Sum_probs=12.6
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
.|+|||||...+.+.
T Consensus 35 ~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 35 RGVGKTSLMERFTDD 49 (192)
T ss_dssp TTSSHHHHHHHHCC-
T ss_pred CCCCHHHHHHHHhcC
Confidence 599999999998764
No 460
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=68.19 E-value=3.8 Score=37.79 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=21.6
Q ss_pred CCCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCC
Q 041028 1 MGGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQN 34 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~ 34 (283)
.||+||||+|..++......+ ..++-++....
T Consensus 335 ~~g~Gktt~a~~lA~~l~~~g--~~vllvD~Dp~ 366 (589)
T 1ihu_A 335 KGGVGKTTMAAAIAVRLADMG--FDVHLTTSDPA 366 (589)
T ss_dssp STTSSHHHHHHHHHHHHHHTT--CCEEEEESCCC
T ss_pred CCCCChhhHHHHHHHHHHHCC--CcEEEEeCCCc
Confidence 389999999999887765432 24455555433
No 461
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=67.86 E-value=2.7 Score=33.59 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=24.6
Q ss_pred CCCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 041028 1 MGGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPNIKKIQGEIAFKLGLK 51 (283)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~~~~l~~~i~~~l~~~ 51 (283)
+.|+||||+|+.++...... | .+ .+++..++...|.+
T Consensus 22 ~~gsGk~~i~~~la~~lg~~--~-----------~d-~~~~~~~a~~~g~~ 58 (223)
T 3hdt_A 22 EYGSGGRIVGKKLAEELGIH--F-----------YD-DDILKLASEKSAVG 58 (223)
T ss_dssp CTTSCHHHHHHHHHHHHTCE--E-----------EC-HHHHHHHHHCC---
T ss_pred CCCCCHHHHHHHHHHHcCCc--E-----------Ec-HHHHHHHHHHcCCC
Confidence 46999999999999976532 1 24 56667777766654
No 462
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=67.61 E-value=2.3 Score=35.70 Aligned_cols=15 Identities=20% Similarity=0.585 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|+|||||.+.+. ..
T Consensus 174 sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 174 SGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTSSHHHHHHHHH-SC
T ss_pred CCCCHHHHHHHHH-Hh
Confidence 6999999999998 54
No 463
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=67.56 E-value=1.4 Score=33.58 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||||...+.+..
T Consensus 30 ~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 30 DNSGKTTIINKLKPSN 45 (190)
T ss_dssp TTSSHHHHHHHTSCGG
T ss_pred CCCCHHHHHHHHhcCC
Confidence 6999999999988764
No 464
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=67.54 E-value=2.3 Score=36.77 Aligned_cols=16 Identities=44% Similarity=0.482 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|.|||||.+.++.-.
T Consensus 39 sGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 39 SGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTSSHHHHHHHHHTSS
T ss_pred CCchHHHHHHHHhcCC
Confidence 5999999999998754
No 465
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=67.52 E-value=1.2 Score=34.57 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
.|+|||||.+.+...
T Consensus 35 ~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 35 SNAGKSSALNTLTNQ 49 (210)
T ss_dssp TTSSHHHHHTTTCCC
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999987654
No 466
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=67.35 E-value=2.3 Score=36.67 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|.|||||.+.++.-.
T Consensus 50 nGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 50 SGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTSSHHHHHHHHHTSS
T ss_pred CCCcHHHHHHHHhCCC
Confidence 5999999999998753
No 467
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=67.23 E-value=2.1 Score=33.42 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 34 ~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 34 SGVGKTTFLYRYTDN 48 (217)
T ss_dssp TTSSHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999998864
No 468
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=67.13 E-value=1.3 Score=33.41 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=2.5
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 17 ~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 17 SGVGKTCVLFRFSED 31 (183)
T ss_dssp CCC------------
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999998754
No 469
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=66.74 E-value=14 Score=31.83 Aligned_cols=77 Identities=9% Similarity=-0.017 Sum_probs=42.9
Q ss_pred HhhhhccCCCCcHHHHHHHHhhCc-----CCCHHHHHHHHh--h---ccccCCCchHHHHHHHHHHHHHHHHhccccccc
Q 041028 147 MELGYNKLEGDELKSTFLLIGYTA-----IASIDDLLMYGM--G---LGLFQGVNKMEAARARVHTLVHKLKASCMLLDH 216 (283)
Q Consensus 147 l~~sy~~L~~~~~k~~fl~~s~fp-----~i~~~~l~~~w~--a---eg~~~~~~~~~~~~~~~~~~~~~L~~~sLl~~~ 216 (283)
+.-++..||.+ .+.++..++.+. .++...+...+. + .|. .+ . ....+..+++.|.+.+||...
T Consensus 299 ~~~~l~~l~~~-~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~----~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 299 QTHELEALSIH-ELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KP-R----GYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp -CCSSSSSCHH-HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CC-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CC-C----CHHHHHHHHHHHHhCCCEEee
Confidence 44567889987 899888888642 566666554442 1 121 00 1 113345677888889999654
Q ss_pred cC--CCcceEEechhH
Q 041028 217 TS--KNEKLFSIHDVV 230 (283)
Q Consensus 217 ~~--~~~~~~~mH~lv 230 (283)
.. ++..+|++|.+.
T Consensus 372 ~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 372 PSGRGMRGRTTLFRLA 387 (412)
T ss_dssp CC-------CCEEEEC
T ss_pred cccCCCCCceeEEEeC
Confidence 32 122456666554
No 470
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=66.62 E-value=2.7 Score=33.12 Aligned_cols=15 Identities=27% Similarity=0.654 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 22 ~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 22 SGVGKSNLLSRFTKN 36 (223)
T ss_dssp TTSSHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHhcC
Confidence 599999999998875
No 471
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=66.24 E-value=2.5 Score=35.41 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+...
T Consensus 17 ~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 17 PNVGKSTLLNKLLGQ 31 (301)
T ss_dssp SSSSHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHCC
Confidence 699999999999875
No 472
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=65.86 E-value=2.6 Score=36.44 Aligned_cols=16 Identities=38% Similarity=0.273 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|.|||||.+.++.-.
T Consensus 38 nGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 38 SGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTSSHHHHHHHHHTSS
T ss_pred CCchHHHHHHHHHCCC
Confidence 5999999999998754
No 473
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=65.86 E-value=2.6 Score=36.65 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|.|||||.+.++.-.
T Consensus 38 nGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 38 SGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTSSHHHHHHHHHTSS
T ss_pred CCcHHHHHHHHHHcCC
Confidence 5999999999998753
No 474
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=65.86 E-value=2.2 Score=35.71 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|.|||||.+.+..-.
T Consensus 73 NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 73 TGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTSSHHHHHHHHTTSS
T ss_pred CCCcHHHHHHHHhcCC
Confidence 5999999999998753
No 475
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=65.77 E-value=2.8 Score=34.57 Aligned_cols=15 Identities=33% Similarity=0.539 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|.|||.||..+++.
T Consensus 113 pgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 113 ATTGKTNIAEAIAHT 127 (267)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhh
Confidence 799999999999985
No 476
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=65.70 E-value=2.6 Score=36.46 Aligned_cols=16 Identities=38% Similarity=0.414 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|.|||||.+.++.-.
T Consensus 38 nGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 38 SGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTSSHHHHHHHHHTSS
T ss_pred CCchHHHHHHHHhcCC
Confidence 5999999999998753
No 477
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=65.69 E-value=2.7 Score=35.88 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.4
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||||+..+.....
T Consensus 65 ~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 65 PGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 79999999999986543
No 478
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=65.67 E-value=2.6 Score=36.42 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=18.5
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTE 30 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~ 30 (283)
.|.|||||++.+...... -.+.+.+.
T Consensus 184 sGsGKSTll~~l~~~~~~---~~g~I~ie 209 (361)
T 2gza_A 184 TGSGKTTLMKALMQEIPF---DQRLITIE 209 (361)
T ss_dssp SSSCHHHHHHHHHTTSCT---TSCEEEEE
T ss_pred CCCCHHHHHHHHHhcCCC---CceEEEEC
Confidence 599999999999886542 23455554
No 479
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=65.38 E-value=2.7 Score=37.34 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
.|+|||||.+.+.+...
T Consensus 166 sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 166 SGVGKSVLLGMMARYTR 182 (438)
T ss_dssp TTSSHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhcccC
Confidence 59999999999999764
No 480
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=65.31 E-value=2.7 Score=36.54 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|.|||||.+.++.-.
T Consensus 46 nGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 46 SGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTSSHHHHHHHHHTSS
T ss_pred CCChHHHHHHHHHcCC
Confidence 5999999999998753
No 481
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=65.01 E-value=2.8 Score=36.26 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=14.3
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
.|+|||||.+.+.....
T Consensus 224 sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 224 SGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSSHHHHHHHHHCCSS
T ss_pred CCccHHHHHHHHhcccc
Confidence 69999999999987543
No 482
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=64.74 E-value=5 Score=36.77 Aligned_cols=39 Identities=18% Similarity=0.372 Sum_probs=29.0
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEEEeCCCCC-HHHHHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFTEVSQNPN-IKKIQGEI 44 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv~v~~~~~-~~~l~~~i 44 (283)
.|+|||+|+..+.+... -+.++++-+++..+ +.++++++
T Consensus 236 ~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 236 AGSGKTVTQHQLAKWSD----AQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp CSHHHHHHHHHHHHHSS----CSEEEEEECCSSSSHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHH
Confidence 58999999999987632 46788888887655 45565554
No 483
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=64.63 E-value=2.6 Score=36.42 Aligned_cols=12 Identities=42% Similarity=0.697 Sum_probs=11.1
Q ss_pred CCCcHHHHHHHH
Q 041028 2 GGIGKTTLAKEV 13 (283)
Q Consensus 2 gGiGKTtLA~~v 13 (283)
||.||||+++.+
T Consensus 42 ~~SGKST~~kq~ 53 (362)
T 1zcb_A 42 GESGKSTFLKQM 53 (362)
T ss_dssp TTSSHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 799999999996
No 484
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=64.60 E-value=2.8 Score=40.02 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
+|+|||+||+.+++..
T Consensus 497 ~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 497 TGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHh
Confidence 6999999999999876
No 485
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=64.46 E-value=2.7 Score=35.30 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+...
T Consensus 16 ~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 16 PNVGKSTLLNNLLGV 30 (301)
T ss_dssp TTSSHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999999875
No 486
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=64.45 E-value=2.8 Score=36.49 Aligned_cols=16 Identities=38% Similarity=0.534 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|.|||||.+.++.-.
T Consensus 38 sGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 38 SGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTSSHHHHHHHHHTSS
T ss_pred CCchHHHHHHHHHcCC
Confidence 5999999999998754
No 487
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=64.18 E-value=2.4 Score=32.25 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=12.1
Q ss_pred CCCcHHHHHHHHHh
Q 041028 2 GGIGKTTLAKEVAR 15 (283)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (283)
+|+|||||...+.+
T Consensus 31 ~~~GKssli~~l~~ 44 (189)
T 2x77_A 31 DNAGKTSILYRLHL 44 (189)
T ss_dssp TTSSHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHc
Confidence 59999999999854
No 488
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=63.65 E-value=2.2 Score=36.66 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=17.7
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFT 29 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv 29 (283)
.|.|||||.+.++.-... ..+.+++
T Consensus 35 nGsGKSTLLr~iaGl~~p---~~G~I~~ 59 (348)
T 3d31_A 35 TGAGKTLFLELIAGFHVP---DSGRILL 59 (348)
T ss_dssp CTHHHHHHHHHHHTSSCC---SEEEEEE
T ss_pred CCccHHHHHHHHHcCCCC---CCcEEEE
Confidence 599999999999875432 2455554
No 489
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=63.63 E-value=3 Score=34.04 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+...
T Consensus 14 ~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 14 PNVGKTSLFNALTGT 28 (258)
T ss_dssp TTSSHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHCC
Confidence 699999999999874
No 490
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=63.55 E-value=3 Score=36.09 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=17.5
Q ss_pred CCCcHHHHHHHHHhhhccCCCCCeEEEE
Q 041028 2 GGIGKTTLAKEVARKAKNGKLFDQIVFT 29 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~~~Fd~~~wv 29 (283)
.|.|||||.+.+..-... -.+.+++
T Consensus 63 nGaGKSTLlr~i~GL~~p---~~G~I~i 87 (366)
T 3tui_C 63 SGAGKSTLIRCVNLLERP---TEGSVLV 87 (366)
T ss_dssp TTSSHHHHHHHHHTSSCC---SEEEEEE
T ss_pred CCchHHHHHHHHhcCCCC---CceEEEE
Confidence 599999999999875432 2455544
No 491
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=63.49 E-value=5.7 Score=35.45 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=29.9
Q ss_pred CCCcHHHHHHHHHhhhccC--------CCCC-eEEEEEeCCCC-CHHHHHHHHHH
Q 041028 2 GGIGKTTLAKEVARKAKNG--------KLFD-QIVFTEVSQNP-NIKKIQGEIAF 46 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~--------~~Fd-~~~wv~v~~~~-~~~~l~~~i~~ 46 (283)
.|+|||+|+..+++..... ++=+ .++++-+++.. .+.++.+++..
T Consensus 156 ~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~ 210 (464)
T 3gqb_B 156 SGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER 210 (464)
T ss_dssp TTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh
Confidence 5999999999999886541 1112 56777777654 45666666544
No 492
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=63.17 E-value=3.1 Score=33.65 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+...
T Consensus 31 ~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 31 TGTGKSAAGNSILRK 45 (260)
T ss_dssp TTSCHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999999765
No 493
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=62.78 E-value=3.3 Score=37.11 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|+|||||++.++.-.
T Consensus 147 nGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 147 SQTGKTSLSRTLCSYA 162 (460)
T ss_dssp TTSSHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhCcc
Confidence 4999999999998754
No 494
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=62.65 E-value=3.1 Score=33.68 Aligned_cols=15 Identities=20% Similarity=0.428 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+...
T Consensus 30 ~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 30 TGAGKSATGNSILGQ 44 (247)
T ss_dssp TTSSHHHHHHHHHTS
T ss_pred CCCcHHHHHHHHhCC
Confidence 699999999998865
No 495
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=62.23 E-value=3.4 Score=35.79 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=14.3
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
.|+|||||++.+.....
T Consensus 145 ~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 145 TGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhcC
Confidence 59999999999987644
No 496
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=62.09 E-value=3.5 Score=34.87 Aligned_cols=15 Identities=40% Similarity=0.694 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+||||||.++..+
T Consensus 153 sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 153 SGIGKSETALELIKR 167 (314)
T ss_dssp TTSSHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhc
Confidence 699999999999875
No 497
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=62.08 E-value=3.3 Score=36.19 Aligned_cols=16 Identities=38% Similarity=0.432 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|.|||||.+.++.-.
T Consensus 56 sGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 56 TGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TTSSHHHHHHHHHTCS
T ss_pred CCChHHHHHHHHhCCC
Confidence 5999999999998743
No 498
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=62.07 E-value=2.7 Score=37.13 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHhhh
Q 041028 2 GGIGKTTLAKEVARKA 17 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (283)
.|+|||||.+.++...
T Consensus 40 sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 40 SGLGKSTLINSLFLTD 55 (418)
T ss_dssp TTSSHHHHHHHHTTCC
T ss_pred CCCcHHHHHHHHhCCC
Confidence 5999999999998653
No 499
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=61.98 E-value=3.4 Score=35.29 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=14.4
Q ss_pred CCCcHHHHHHHHHhhhc
Q 041028 2 GGIGKTTLAKEVARKAK 18 (283)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (283)
+|+|||||.+.+.....
T Consensus 64 ~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 64 PGVGKSTTIDALGSLLT 80 (337)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhh
Confidence 69999999999987543
No 500
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=61.90 E-value=1.6 Score=33.58 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=0.0
Q ss_pred CCCcHHHHHHHHHhh
Q 041028 2 GGIGKTTLAKEVARK 16 (283)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (283)
+|+|||||...+.+.
T Consensus 29 ~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 29 ATVGKSALISMFTSK 43 (208)
T ss_dssp ---------------
T ss_pred CCCCHHHHHHHHHhC
Confidence 589999999988765
Done!