BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041030
(249 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 21/118 (17%)
Query: 139 PAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHL 198
PA SA+EAL V I++S + N+ C +C ++F + ++PCKHL
Sbjct: 198 PASKSAIEALPLVNITKSNLNSEFNQ---CAVCMDDFE---------EGTEAKQMPCKHL 245
Query: 199 YHSDCIVPWLRHYSTTCPVCRYEL-------KDSIIGSGGDNIMNDHHHHHELRDDGD 249
YH DC++PWL ++ +CPVCR+EL + + G+ G + ND + + R DGD
Sbjct: 246 YHKDCLLPWLELHN-SCPVCRHELPTDDPDYERRVRGAQGTSGGNDGDNSGQ-RSDGD 301
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 54/84 (64%), Gaps = 13/84 (15%)
Query: 139 PAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHL 198
PA SA++AL V++++ + N+ C +C +EF +D SD + ++PCKH+
Sbjct: 190 PASKSAIDALPTVKVTKDMLKSEMNQ---CAVCMDEF------EDGSD---VKQMPCKHV 237
Query: 199 YHSDCIVPWLRHYSTTCPVCRYEL 222
+H DC++PWL ++ +CPVCR+EL
Sbjct: 238 FHQDCLLPWLELHN-SCPVCRFEL 260
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 14/91 (15%)
Query: 134 DAAPTPAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMEL 193
+ P PA ++AL ++I+E + E CP+CKE++ V + V +L
Sbjct: 197 NTGPPPADTEKIQALPTIQITEE-HVGSGLE---CPVCKEDYTVGESV---------RQL 243
Query: 194 PCKHLYHSDCIVPWLRHYSTTCPVCRYELKD 224
PC HL+H+DCI+PWL + TCPVCR L
Sbjct: 244 PCNHLFHNDCIIPWLEQHD-TCPVCRKSLSG 273
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 14/89 (15%)
Query: 134 DAAPTPAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMEL 193
+ P PA ++AL ++I+E + E CP+CKE++ V + V +L
Sbjct: 198 NTGPPPADTDKIQALPTIQITEE-HVGFGLE---CPVCKEDYTVGESV---------RQL 244
Query: 194 PCKHLYHSDCIVPWLRHYSTTCPVCRYEL 222
PC HL+H+DCI+PWL + TCPVCR L
Sbjct: 245 PCNHLFHNDCIIPWLEQHD-TCPVCRKSL 272
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 14/91 (15%)
Query: 134 DAAPTPAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMEL 193
+ P PA ++AL ++I+E + E CP+CKE++ V + + +L
Sbjct: 198 NTGPPPADNEKIQALPTIQITEE-HVGSGLE---CPVCKEDYTVGE---------CVRQL 244
Query: 194 PCKHLYHSDCIVPWLRHYSTTCPVCRYELKD 224
PC HL+H+DCI+PWL + TCPVCR L
Sbjct: 245 PCNHLFHNDCIIPWLEQHD-TCPVCRKSLSG 274
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 14/97 (14%)
Query: 123 MIEYPMHDLQPDAAPTPAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVD 182
+I M Q AP PAP + +K V+ + E C IC E F++ DDV
Sbjct: 355 IISQLMEQAQGHNAPAPAPEDVIAKMK-VQKPPKELIDEEGE---CTICMEMFKINDDV- 409
Query: 183 DDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCR 219
++LPCKH +H +CI PWLR + TC +CR
Sbjct: 410 --------IQLPCKHYFHENCIKPWLR-VNGTCAICR 437
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 16/86 (18%)
Query: 137 PTPAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCK 196
P PA + VE+L R IS + + CP+C EF E ++E+PC
Sbjct: 63 PPPAAKAVVESLPRTVISSAKADLK------CPVCLLEFEA---------EETVIEMPCH 107
Query: 197 HLYHSDCIVPWLRHYSTTCPVCRYEL 222
HL+HS+CI+PWL + +CP+CR+EL
Sbjct: 108 HLFHSNCILPWLSK-TNSCPLCRHEL 132
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 14/90 (15%)
Query: 134 DAAPTPAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMEL 193
+ P PA + +L V +++ + N CP+CKE++ V E + +L
Sbjct: 199 NTGPPPADKEKITSLPTVTVTQE----QVNTGLECPVCKEDYTV---------EEKVRQL 245
Query: 194 PCKHLYHSDCIVPWLRHYSTTCPVCRYELK 223
PC H +HS CIVPWL + TCPVCR L
Sbjct: 246 PCNHFFHSSCIVPWLELHD-TCPVCRKSLN 274
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 14/90 (15%)
Query: 134 DAAPTPAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMEL 193
+ P PA + +L V +++ Q+ E CP+CKE++ V ++V +L
Sbjct: 198 NTGPPPADKEKITSLPTVTVTQE-QVDMGLE---CPVCKEDYTVEEEV---------RQL 244
Query: 194 PCKHLYHSDCIVPWLRHYSTTCPVCRYELK 223
PC H +HS CIVPWL + TCPVCR L
Sbjct: 245 PCNHFFHSSCIVPWLELHD-TCPVCRKSLN 273
>sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8
PE=1 SV=1
Length = 334
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 14/85 (16%)
Query: 139 PAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHL 198
PA SA+EAL+ +S S V C +CK+ + + +LPC H
Sbjct: 232 PAAKSAIEALETFEVSSS----EGEMVMVCAVCKDGMVMGETGK---------KLPCGHC 278
Query: 199 YHSDCIVPWLRHYSTTCPVCRYELK 223
YH DCIVPWL +CPVCR++L+
Sbjct: 279 YHGDCIVPWL-GTRNSCPVCRFQLE 302
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 14/89 (15%)
Query: 134 DAAPTPAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMEL 193
+ P PA ++AL V ++E + E CP+CKE++ + + V +L
Sbjct: 201 NTGPPPADKEKIQALPTVPVTEE-HVGSGLE---CPVCKEDYALGESV---------RQL 247
Query: 194 PCKHLYHSDCIVPWLRHYSTTCPVCRYEL 222
PC HL+H CIVPWL + +CPVCR L
Sbjct: 248 PCNHLFHDSCIVPWLEQHD-SCPVCRKSL 275
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 128 MHDLQPDAAPTPAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDE 187
+ D P AP PA VE L + +E E +CC ICKE + D
Sbjct: 192 LDDGGPPRAP-PASKEVVEKLPVIIFTEELLKKFGAEAECC-ICKENLVIGDK------- 242
Query: 188 VMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYEL 222
+ ELPCKH +H C+ PWL ++ +CP+CR+EL
Sbjct: 243 --MQELPCKHTFHPPCLKPWLDEHN-SCPICRHEL 274
>sp|Q7ZW78|RN181_DANRE E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2
SV=2
Length = 156
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 14/86 (16%)
Query: 137 PTPAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCK 196
P PA + V++L V IS ++++ CP+C EF ++ V E+PCK
Sbjct: 52 PPPAAKAVVQSLPVVIISPE----QADKGVKCPVCLLEFEEQESV---------REMPCK 98
Query: 197 HLYHSDCIVPWLRHYSTTCPVCRYEL 222
HL+H+ CI+PWL + + +CP+CR EL
Sbjct: 99 HLFHTGCILPWL-NKTNSCPLCRLEL 123
>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1
Length = 313
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 14/89 (15%)
Query: 134 DAAPTPAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMEL 193
+ P PA ++AL V ++E + E CP+CK+++ + + V +L
Sbjct: 202 NTGPPPADKEKIQALPTVPVTEE-HVGSGLE---CPVCKDDYGLGEHV---------RQL 248
Query: 194 PCKHLYHSDCIVPWLRHYSTTCPVCRYEL 222
PC HL+H CIVPWL + +CPVCR L
Sbjct: 249 PCNHLFHDGCIVPWLEQHD-SCPVCRKSL 276
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 14/86 (16%)
Query: 137 PTPAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCK 196
P PA VE+L +V ++ +++ CP+C EF + V +LPC+
Sbjct: 52 PPPAAKKVVESLPKVTVTPE----QADAALKCPVCLLEFEEGETV---------RQLPCE 98
Query: 197 HLYHSDCIVPWLRHYSTTCPVCRYEL 222
HL+HS CI+PWL + +CP+CR+EL
Sbjct: 99 HLFHSSCILPWLGK-TNSCPLCRHEL 123
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 14/89 (15%)
Query: 134 DAAPTPAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMEL 193
+ P PA ++AL V ++E + E CP+CK+++ + + V +L
Sbjct: 199 NTGPPPADKEKIQALPTVPVTEE-HVGSGLE---CPVCKDDYALGERV---------RQL 245
Query: 194 PCKHLYHSDCIVPWLRHYSTTCPVCRYEL 222
PC HL+H CIVPWL + +CPVCR L
Sbjct: 246 PCNHLFHDGCIVPWLEQHD-SCPVCRKSL 273
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 14/86 (16%)
Query: 137 PTPAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCK 196
P PA VE+L +V ++ +++ CP+C EF + V +LPC+
Sbjct: 52 PPPASKKVVESLPKVTVTPE----QADAALKCPVCLLEFEEGETV---------RQLPCE 98
Query: 197 HLYHSDCIVPWLRHYSTTCPVCRYEL 222
HL+HS CI+PWL + +CP+CR+EL
Sbjct: 99 HLFHSACILPWLGK-TNSCPLCRHEL 123
>sp|Q5R4R1|PJA2_PONAB E3 ubiquitin-protein ligase Praja-2 OS=Pongo abelii GN=PJA2 PE=2
SV=1
Length = 708
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 134 DAAPTPAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMEL 193
+ A PA +++ L + E T + QCCPIC E+ ++DD+ EL
Sbjct: 602 EVANPPASKESIDGLPETLVLEDH--TAIGQEQCCPICCSEY-IKDDI--------ATEL 650
Query: 194 PCKHLYHSDCIVPWLRHYSTTCPVCRYELKDSII 227
PC H +H C+ WL+ S TCPVCR ++I
Sbjct: 651 PCHHFFHKPCVSIWLQK-SGTCPVCRRHFPPAVI 683
>sp|O43164|PJA2_HUMAN E3 ubiquitin-protein ligase Praja-2 OS=Homo sapiens GN=PJA2 PE=1
SV=4
Length = 708
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 134 DAAPTPAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMEL 193
+ A PA +++ L + E T + QCCPIC E+ ++DD+ EL
Sbjct: 602 EVANPPASKESIDGLPETLVLEDH--TAIGQEQCCPICCSEY-IKDDI--------ATEL 650
Query: 194 PCKHLYHSDCIVPWLRHYSTTCPVCRYELKDSII 227
PC H +H C+ WL+ S TCPVCR ++I
Sbjct: 651 PCHHFFHKPCVSIWLQK-SGTCPVCRRHFPPAVI 683
>sp|Q80U04|PJA2_MOUSE E3 ubiquitin-protein ligase Praja-2 OS=Mus musculus GN=Pja2 PE=1
SV=2
Length = 707
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 134 DAAPTPAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMEL 193
+ A PA +++ L + E T + QCCPIC E+ ++DD+ EL
Sbjct: 601 EVANPPASKESIDGLPETLVLEDH--TAIGQEQCCPICCSEY-IKDDI--------ATEL 649
Query: 194 PCKHLYHSDCIVPWLRHYSTTCPVCRYELKDSII 227
PC H +H C+ WL+ S TCPVCR ++I
Sbjct: 650 PCHHFFHKPCVSIWLQK-SGTCPVCRRHFPPAVI 682
>sp|Q63364|PJA2_RAT E3 ubiquitin-protein ligase Praja-2 OS=Rattus norvegicus GN=Pja2
PE=2 SV=1
Length = 707
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 134 DAAPTPAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMEL 193
+ A PA +++ L + E T + QCCPIC E+ ++DD+ EL
Sbjct: 601 EVANPPASKESIDGLPETLVLEDH--TAIGQEQCCPICCSEY-IKDDI--------ATEL 649
Query: 194 PCKHLYHSDCIVPWLRHYSTTCPVCRYELKDSII 227
PC H +H C+ WL+ S TCPVCR ++I
Sbjct: 650 PCHHFFHKPCVSIWLQK-SGTCPVCRRHFPPAVI 682
>sp|Q6AXU4|RN181_RAT E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181
PE=1 SV=1
Length = 165
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 16/86 (18%)
Query: 137 PTPAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCK 196
P PA + VE+L R I S + CP+C + + +E ++E+PC
Sbjct: 63 PPPAAKAVVESLPRTVIRSSKAELK------CPVC---------LLEFEEEETVIEMPCH 107
Query: 197 HLYHSDCIVPWLRHYSTTCPVCRYEL 222
HL+HS+CI+PWL + +CP+CR+EL
Sbjct: 108 HLFHSNCILPWLSK-TNSCPLCRHEL 132
>sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=4 SV=1
Length = 741
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 167 CCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDSI 226
CPIC DD++++ DE ++PC H++ +C+ WL ++ TCP+CR E+
Sbjct: 106 TCPICY------DDMNEN-DEKQATKMPCGHIFGKNCLQKWLENH-CTCPLCRKEVPHET 157
Query: 227 IGSGGDNIMNDHHHHHELRDD 247
+GS I+ H H LR +
Sbjct: 158 VGSAHPPILFIIPHSHTLRGN 178
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 158 QLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPV 217
+ + +E C IC EE+ +D D++ I LPC H YH C+ PWL TCPV
Sbjct: 230 KFKKGDEYDVCAICLEEY-------EDGDKLRI--LPCSHAYHCKCVDPWLTKTKKTCPV 280
Query: 218 CRYEL 222
C+ ++
Sbjct: 281 CKQKV 285
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 158 QLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPV 217
+ + +E C IC EE+ +D D++ I LPC H YH C+ PWL TCPV
Sbjct: 230 KFKKGDEYDVCAICLEEY-------EDGDKLRI--LPCSHAYHCKCVDPWLTKTKKTCPV 280
Query: 218 CRYEL 222
C+ ++
Sbjct: 281 CKQKV 285
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 13/76 (17%)
Query: 158 QLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPV 217
+ + +E C IC +E+ +D D++ I LPC H YH C+ PWL TCPV
Sbjct: 230 KFKKGDEYDVCAICLDEY-------EDGDKLRI--LPCSHAYHCKCVDPWLTKTKKTCPV 280
Query: 218 CRYELKDSIIGSGGDN 233
C K ++ S GD+
Sbjct: 281 C----KQKVVPSQGDS 292
>sp|Q3T0W3|RN181_BOVIN E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2
SV=1
Length = 153
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 16/86 (18%)
Query: 137 PTPAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCK 196
P PA +AVE L R I S + CP+C + + +E +E+PC
Sbjct: 51 PPPAAKTAVENLPRTVIRGSQAELK------CPVC---------LLEFEEEETAIEMPCH 95
Query: 197 HLYHSDCIVPWLRHYSTTCPVCRYEL 222
HL+HS+CI+PWL + +CP+CR+EL
Sbjct: 96 HLFHSNCILPWLSK-TNSCPLCRHEL 120
>sp|Q9P0P0|RN181_HUMAN E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1
SV=1
Length = 153
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 16/86 (18%)
Query: 137 PTPAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCK 196
P PA + VE L R I S + CP+C + + +E +E+PC
Sbjct: 51 PPPAAKTVVENLPRTVIRGSQAELK------CPVC---------LLEFEEEETAIEMPCH 95
Query: 197 HLYHSDCIVPWLRHYSTTCPVCRYEL 222
HL+HS CI+PWL + +CP+CRYEL
Sbjct: 96 HLFHSSCILPWLSK-TNSCPLCRYEL 120
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 161 RSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCR 219
+ +E C IC +E+ +D D++ I LPC H YHS C+ PWL TCP+C+
Sbjct: 223 KGDEYDVCAICLDEY-------EDGDKLRI--LPCAHAYHSRCVDPWLTQTRKTCPICK 272
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 158 QLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPV 217
+ + +E C IC +E+ +D D++ I LPC H YH C+ PWL TCPV
Sbjct: 230 KFKKGDEYDVCAICLDEY-------EDGDKLRI--LPCSHAYHCKCVDPWLTKTKKTCPV 280
Query: 218 CRYEL 222
C+ ++
Sbjct: 281 CKQKV 285
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 158 QLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPV 217
+ + +E C IC +E+ +D D++ I LPC H YH C+ PWL TCPV
Sbjct: 230 KFKKGDEYDVCAICLDEY-------EDGDKLRI--LPCSHAYHCKCVDPWLTKTKKTCPV 280
Query: 218 CRYEL 222
C+ ++
Sbjct: 281 CKQKV 285
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 158 QLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPV 217
+ + +E C IC +E+ +D D++ I LPC H YH C+ PWL TCPV
Sbjct: 230 KFKKGDEYDVCAICLDEY-------EDGDKLRI--LPCSHAYHCKCVDPWLTKTKKTCPV 280
Query: 218 CRYEL 222
C+ ++
Sbjct: 281 CKQKV 285
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 145 VEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCI 204
+ +L R E +NE C IC R D +DD D ++ LPCKH YHS+CI
Sbjct: 267 IASLPSKRYKEGDNQNGTNE--SCVIC------RLDYEDDEDLIL---LPCKHSYHSECI 315
Query: 205 VPWLRHYSTTCPVCRYELKDSIIG 228
WL+ + CPVC E+ S G
Sbjct: 316 NNWLK-INKVCPVCSAEVSTSTSG 338
>sp|Q8NG27|PJA1_HUMAN E3 ubiquitin-protein ligase Praja-1 OS=Homo sapiens GN=PJA1 PE=1
SV=2
Length = 643
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 134 DAAPTPAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMEL 193
+ A PA +++AL + ++E + CCPIC E+ V+ +V EL
Sbjct: 563 EVANPPASKESIDALPEILVTEDHGAV--GQEMCCPICCSEY-VKGEV--------ATEL 611
Query: 194 PCKHLYHSDCIVPWLRHYSTTCPVCR 219
PC H +H C+ WL+ S TCPVCR
Sbjct: 612 PCHHYFHKPCVSIWLQK-SGTCPVCR 636
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 161 RSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCR 219
+ +E C IC +E+ +D D++ + LPC H YHS C+ PWL TCP+C+
Sbjct: 223 KGDEYDVCAICLDEY-------EDGDKLRV--LPCAHAYHSRCVDPWLTQTRKTCPICK 272
>sp|Q9SKK8|ATL22_ARATH RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2
SV=2
Length = 377
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 13/79 (16%)
Query: 143 SAVEALKRVRISESTQL-TRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELP-CKHLYH 200
S +E+ K+V + ES +L T SN+V C PIC E+ ++ V LP C+H +H
Sbjct: 302 STIESYKKVELGESRRLPTGSNDVVC-PICLSEYATKETVRC---------LPECEHCFH 351
Query: 201 SDCIVPWLRHYSTTCPVCR 219
++CI WL+ +S +CPVCR
Sbjct: 352 TECIDAWLKLHS-SCPVCR 369
>sp|O55176|PJA1_MOUSE E3 ubiquitin-protein ligase Praja-1 OS=Mus musculus GN=Pja1 PE=1
SV=3
Length = 578
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 134 DAAPTPAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMEL 193
+ A PA +++AL + ++E + CCPIC E+ V+ +V EL
Sbjct: 498 EVANPPASKESIDALPEILVTEDHGAV--GQEMCCPICCSEY-VKGEV--------ATEL 546
Query: 194 PCKHLYHSDCIVPWLRHYSTTCPVCR 219
PC H +H C+ WL+ S TCPVCR
Sbjct: 547 PCHHYFHKPCVSIWLQK-SGTCPVCR 571
>sp|Q6NKR1|ATL28_ARATH RING-H2 finger protein ATL28 OS=Arabidopsis thaliana GN=ATL28 PE=2
SV=1
Length = 254
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 160 TRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCR 219
T+ N C IC EF D D V ++ + C+H +HS+CI W + T CPVCR
Sbjct: 95 TKKNHGTECAICLSEF-------SDEDTVRLITV-CRHPFHSNCIDLWFELHKT-CPVCR 145
Query: 220 YELKDSIIGSG 230
EL +IGSG
Sbjct: 146 CELDPGMIGSG 156
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 161 RSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCR 219
+ ++ C IC +E+ +D D++ + LPC H YHS C+ PWL TCP+C+
Sbjct: 223 KGDQYDVCAICLDEY-------EDGDKLRV--LPCAHAYHSRCVDPWLTQTRKTCPICK 272
>sp|Q3U2C5|RN149_MOUSE E3 ubiquitin-protein ligase RNF149 OS=Mus musculus GN=Rnf149 PE=2
SV=3
Length = 394
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 11/65 (16%)
Query: 168 CPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDSII 227
C +C E F+V+D +I LPCKH++H CI PWL + TCP+C+ ++ + +
Sbjct: 265 CAVCIENFKVKD---------VIRILPCKHIFHRICIDPWLLDHR-TCPMCKLDVIKA-L 313
Query: 228 GSGGD 232
G GD
Sbjct: 314 GYWGD 318
>sp|Q8NC42|RN149_HUMAN E3 ubiquitin-protein ligase RNF149 OS=Homo sapiens GN=RNF149 PE=2
SV=2
Length = 400
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 10/59 (16%)
Query: 168 CPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDSI 226
C +C E F+V+D +I LPCKH++H CI PWL + TCP+C+ ++ ++
Sbjct: 269 CAVCIENFKVKD---------IIRILPCKHIFHRICIDPWLLDHR-TCPMCKLDVIKAL 317
>sp|Q9FG21|ATL71_ARATH Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana
GN=ATL71 PE=3 SV=1
Length = 197
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 12/72 (16%)
Query: 149 KRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELP-CKHLYHSDCIVPW 207
+ R+S S Q S+ CC IC +++ D MI LP C HL+H +C+ PW
Sbjct: 111 EEARVSYSLQ-KESSTTSCCSICLADYKKMD---------MIRVLPDCNHLFHDNCVDPW 160
Query: 208 LRHYSTTCPVCR 219
LR + TCPVCR
Sbjct: 161 LRLHP-TCPVCR 171
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 145 VEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCI 204
+E L + + +R + C IC+ ++++ + M LPCKH+YHS+CI
Sbjct: 174 IETLPTKKYKFGSIFSRKRAGERCVICQLKYKIGE---------RQMNLPCKHVYHSECI 224
Query: 205 VPWLRHYSTTCPVCRYEL 222
WL + CPVC E+
Sbjct: 225 SKWLS-INKVCPVCNSEV 241
>sp|Q9SZL4|ATL18_ARATH RING-H2 finger protein ATL18 OS=Arabidopsis thaliana GN=ATL18 PE=2
SV=1
Length = 145
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 29/57 (50%), Gaps = 10/57 (17%)
Query: 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELP-CKHLYHSDCIVPWLRHYSTTCPVCR 219
E CCPIC EF D V LP C HL+H +CI PWL TCP+CR
Sbjct: 58 EEICCPICLVEFEAEDAVT---------HLPRCAHLFHINCIEPWLLRGHLTCPLCR 105
>sp|Q9EPZ8|RN103_RAT E3 ubiquitin-protein ligase RNF103 OS=Rattus norvegicus GN=Rnf103
PE=2 SV=1
Length = 682
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 168 CPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRY 220
C +C E F + ++M LPC H++H +CIV WL CPVCR+
Sbjct: 618 CVVCLENFE---------NGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCRW 661
>sp|Q9R1W3|RN103_MOUSE E3 ubiquitin-protein ligase RNF103 OS=Mus musculus GN=Rnf103 PE=2
SV=2
Length = 683
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 168 CPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRY 220
C +C E F + ++M LPC H++H +CIV WL CPVCR+
Sbjct: 619 CVVCLENFE---------NGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCRW 662
>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2
SV=2
Length = 404
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 142 VSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHS 201
S +E + S L E C +C EF + DE + + C H++H
Sbjct: 118 ASIIETFPTFQYSTVKTLRIGKEALECSVCLNEF--------EDDETLRLIPKCCHVFHP 169
Query: 202 DCIVPWLRHYSTTCPVCRYEL 222
CI WLR + TTCP+CR +L
Sbjct: 170 GCIDAWLRSH-TTCPLCRADL 189
>sp|O00237|RN103_HUMAN E3 ubiquitin-protein ligase RNF103 OS=Homo sapiens GN=RNF103 PE=1
SV=1
Length = 685
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 168 CPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRY 220
C +C E F + ++M LPC H++H +CIV WL CPVCR+
Sbjct: 621 CVVCLENFE---------NGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCRW 664
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Query: 193 LPCKHLYHSDCIVPWLRHYSTTCPVCRYELK 223
LPCKH +H +CI+ WL+ + +CP+CRYEL+
Sbjct: 86 LPCKHEFHEECILLWLKK-TNSCPLCRYELE 115
>sp|Q6NRX0|RN149_XENLA E3 ubiquitin-protein ligase RNF149 OS=Xenopus laevis GN=rnf149 PE=2
SV=1
Length = 397
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 10/59 (16%)
Query: 168 CPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDSI 226
C +C E ++ +D ++ LPCKH++H CI PWL + TCP+C+ ++ ++
Sbjct: 264 CAVCIENYKTKD---------LVRILPCKHIFHRLCIDPWLIEHR-TCPMCKLDVIKAL 312
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,111,643
Number of Sequences: 539616
Number of extensions: 5202637
Number of successful extensions: 71727
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 776
Number of HSP's that attempted gapping in prelim test: 46663
Number of HSP's gapped (non-prelim): 14137
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)