Query 041030
Match_columns 249
No_of_seqs 223 out of 1441
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 04:30:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041030.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041030hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 3.6E-18 1.2E-22 128.9 5.8 82 132-225 9-90 (91)
2 1x4j_A Ring finger protein 38; 99.6 4.1E-17 1.4E-21 118.2 2.2 71 142-225 3-73 (75)
3 2kiz_A E3 ubiquitin-protein li 99.6 4.6E-15 1.6E-19 105.4 6.0 55 163-227 12-66 (69)
4 1iym_A EL5; ring-H2 finger, ub 99.5 2.4E-15 8.1E-20 102.2 4.1 50 164-223 4-54 (55)
5 2ep4_A Ring finger protein 24; 99.5 7.5E-15 2.6E-19 105.7 6.4 54 163-226 13-66 (74)
6 2ect_A Ring finger protein 126 99.5 9.5E-15 3.2E-19 106.2 6.5 57 163-229 13-69 (78)
7 2ecl_A Ring-box protein 2; RNF 99.5 7.2E-15 2.4E-19 108.6 3.2 64 163-227 13-79 (81)
8 2ecm_A Ring finger and CHY zin 99.5 2.3E-14 8E-19 97.1 5.0 51 164-223 4-54 (55)
9 3ng2_A RNF4, snurf, ring finge 99.4 5.6E-14 1.9E-18 99.9 4.3 55 163-227 8-66 (71)
10 4a0k_B E3 ubiquitin-protein li 99.4 6.4E-15 2.2E-19 116.9 -0.9 79 146-225 29-113 (117)
11 3dpl_R Ring-box protein 1; ubi 99.4 3.3E-14 1.1E-18 110.8 3.0 63 160-223 32-100 (106)
12 2ea6_A Ring finger protein 4; 99.4 8.7E-14 3E-18 98.1 4.3 56 163-224 13-68 (69)
13 1v87_A Deltex protein 2; ring- 99.4 1.7E-13 6E-18 106.3 6.4 61 165-225 25-95 (114)
14 2xeu_A Ring finger protein 4; 99.4 1.1E-13 3.8E-18 96.2 3.8 56 165-226 3-58 (64)
15 2djb_A Polycomb group ring fin 99.4 5.6E-13 1.9E-17 95.6 6.2 53 163-228 13-66 (72)
16 1chc_A Equine herpes virus-1 r 99.4 3.1E-13 1E-17 95.5 4.5 49 164-224 4-52 (68)
17 2d8t_A Dactylidin, ring finger 99.4 2E-13 6.7E-18 97.8 3.4 52 163-227 13-64 (71)
18 2ysl_A Tripartite motif-contai 99.4 4.5E-13 1.6E-17 95.8 4.8 53 163-227 18-72 (73)
19 2ecy_A TNF receptor-associated 99.3 6.3E-13 2.1E-17 93.7 4.1 52 163-226 13-64 (66)
20 2yur_A Retinoblastoma-binding 99.3 1.1E-12 3.8E-17 94.8 5.2 49 163-224 13-64 (74)
21 2csy_A Zinc finger protein 183 99.3 1.1E-12 3.9E-17 96.0 4.9 48 163-223 13-60 (81)
22 2d8s_A Cellular modulator of i 99.3 1.4E-12 4.8E-17 96.6 5.0 53 163-226 13-72 (80)
23 1t1h_A Gspef-atpub14, armadill 99.3 1.4E-12 4.9E-17 94.5 4.8 50 164-225 7-56 (78)
24 2ct2_A Tripartite motif protei 99.3 2.3E-12 7.8E-17 95.0 6.0 56 163-227 13-71 (88)
25 4ayc_A E3 ubiquitin-protein li 99.3 6.4E-13 2.2E-17 107.1 3.0 48 165-225 53-100 (138)
26 3lrq_A E3 ubiquitin-protein li 99.3 8.5E-13 2.9E-17 100.9 2.2 48 165-225 22-71 (100)
27 1g25_A CDK-activating kinase a 99.3 2.9E-12 9.8E-17 90.0 4.6 55 165-227 3-58 (65)
28 2ecn_A Ring finger protein 141 99.2 1.2E-12 4.1E-17 93.0 1.6 48 164-225 14-61 (70)
29 2ysj_A Tripartite motif-contai 99.2 5.3E-12 1.8E-16 88.0 4.7 44 163-218 18-63 (63)
30 2ecw_A Tripartite motif-contai 99.2 9.2E-12 3.2E-16 90.7 5.4 50 164-225 18-72 (85)
31 4ap4_A E3 ubiquitin ligase RNF 99.2 4.4E-12 1.5E-16 99.6 3.7 54 164-227 6-63 (133)
32 2ecv_A Tripartite motif-contai 99.2 1.9E-11 6.6E-16 89.0 6.1 53 163-227 17-74 (85)
33 2y43_A E3 ubiquitin-protein li 99.2 5.7E-12 2E-16 95.6 3.3 47 165-224 22-69 (99)
34 2ckl_A Polycomb group ring fin 99.2 8.8E-12 3E-16 96.1 4.2 48 165-225 15-63 (108)
35 3fl2_A E3 ubiquitin-protein li 99.2 8.1E-12 2.8E-16 98.5 3.7 48 165-224 52-99 (124)
36 2egp_A Tripartite motif-contai 99.2 2.4E-12 8.3E-17 93.2 0.6 51 163-225 10-66 (79)
37 2ecj_A Tripartite motif-contai 99.2 1E-11 3.5E-16 84.6 2.8 44 163-218 13-58 (58)
38 3ztg_A E3 ubiquitin-protein li 99.2 1.7E-11 5.7E-16 91.5 4.0 49 163-223 11-61 (92)
39 1z6u_A NP95-like ring finger p 99.2 1.7E-11 5.8E-16 100.5 4.2 50 164-225 77-126 (150)
40 4ap4_A E3 ubiquitin ligase RNF 99.1 1.2E-11 4.1E-16 97.1 2.7 56 165-226 72-127 (133)
41 3l11_A E3 ubiquitin-protein li 99.1 5.3E-12 1.8E-16 98.3 0.4 49 164-224 14-62 (115)
42 2ckl_B Ubiquitin ligase protei 99.1 2.1E-11 7.3E-16 100.6 3.5 48 165-224 54-102 (165)
43 1jm7_A BRCA1, breast cancer ty 99.1 1.8E-11 6.2E-16 94.2 2.8 50 165-227 21-73 (112)
44 3hct_A TNF receptor-associated 99.1 3.5E-11 1.2E-15 94.3 3.6 51 163-225 16-66 (118)
45 1rmd_A RAG1; V(D)J recombinati 99.1 3.6E-11 1.2E-15 93.6 3.4 51 165-227 23-73 (116)
46 1bor_A Transcription factor PM 99.1 2.5E-11 8.4E-16 83.4 1.2 50 163-228 4-53 (56)
47 2kr4_A Ubiquitin conjugation f 99.1 8.7E-11 3E-15 87.4 4.1 49 164-225 13-61 (85)
48 3knv_A TNF receptor-associated 99.1 4.5E-11 1.5E-15 97.1 2.6 51 163-225 29-79 (141)
49 2ct0_A Non-SMC element 1 homol 99.1 1.4E-10 4.7E-15 84.8 4.8 50 164-225 14-65 (74)
50 1e4u_A Transcriptional repress 99.0 8.8E-11 3E-15 86.4 3.6 57 163-227 9-65 (78)
51 2vje_A E3 ubiquitin-protein li 99.0 1.5E-10 5.3E-15 81.6 3.8 46 165-223 8-56 (64)
52 2kre_A Ubiquitin conjugation f 99.0 1.5E-10 5.3E-15 88.8 4.1 49 164-225 28-76 (100)
53 1wgm_A Ubiquitin conjugation f 99.0 2.2E-10 7.6E-15 87.6 4.3 49 164-225 21-70 (98)
54 2vje_B MDM4 protein; proto-onc 98.9 5.6E-10 1.9E-14 78.5 3.8 46 165-223 7-55 (63)
55 2y1n_A E3 ubiquitin-protein li 98.9 7.7E-10 2.6E-14 103.6 5.0 49 165-225 332-380 (389)
56 1jm7_B BARD1, BRCA1-associated 98.9 3E-10 1E-14 88.8 1.2 45 165-224 22-67 (117)
57 2c2l_A CHIP, carboxy terminus 98.9 9E-10 3.1E-14 96.4 4.3 49 164-224 207-255 (281)
58 3hcs_A TNF receptor-associated 98.9 9.5E-10 3.2E-14 91.0 3.9 51 163-225 16-66 (170)
59 4ic3_A E3 ubiquitin-protein li 98.8 4.1E-10 1.4E-14 81.4 0.7 43 165-224 24-67 (74)
60 2yu4_A E3 SUMO-protein ligase 98.8 1.6E-09 5.4E-14 81.9 2.9 48 164-223 6-62 (94)
61 2f42_A STIP1 homology and U-bo 98.7 7.7E-09 2.6E-13 87.4 4.1 50 164-225 105-154 (179)
62 2ea5_A Cell growth regulator w 98.7 1.4E-08 4.7E-13 72.5 4.3 45 163-224 13-58 (68)
63 2ecg_A Baculoviral IAP repeat- 98.7 5.2E-09 1.8E-13 75.6 1.5 43 165-224 25-68 (75)
64 1vyx_A ORF K3, K3RING; zinc-bi 98.7 1.2E-08 4.3E-13 71.3 3.4 50 163-224 4-59 (60)
65 3k1l_B Fancl; UBC, ring, RWD, 98.6 1.6E-08 5.6E-13 93.1 2.6 59 163-225 306-374 (381)
66 2yho_A E3 ubiquitin-protein li 98.5 1.6E-08 5.5E-13 74.2 1.2 43 165-224 18-61 (79)
67 1wim_A KIAA0161 protein; ring 98.5 2.7E-08 9.2E-13 74.7 2.1 52 164-224 4-66 (94)
68 2bay_A PRE-mRNA splicing facto 98.5 5.4E-08 1.9E-12 68.1 2.9 48 165-225 3-51 (61)
69 3htk_C E3 SUMO-protein ligase 98.4 1.2E-07 4.3E-12 84.3 2.7 51 163-225 179-233 (267)
70 3t6p_A Baculoviral IAP repeat- 98.3 1.1E-07 3.8E-12 87.8 1.9 44 164-224 294-338 (345)
71 3vk6_A E3 ubiquitin-protein li 98.2 6.5E-07 2.2E-11 68.6 3.9 47 167-224 3-49 (101)
72 3nw0_A Non-structural maintena 97.4 9.8E-05 3.3E-09 64.7 4.4 51 164-225 179-230 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 94.1 0.031 1.1E-06 41.5 2.9 34 165-207 3-36 (101)
74 2ko5_A Ring finger protein Z; 93.9 0.022 7.6E-07 43.0 1.9 49 165-227 28-76 (99)
75 2lri_C Autoimmune regulator; Z 91.8 0.088 3E-06 36.9 2.4 48 165-224 12-62 (66)
76 2kdx_A HYPA, hydrogenase/ureas 91.3 0.1 3.6E-06 40.3 2.6 31 22-55 72-103 (119)
77 2lcq_A Putative toxin VAPC6; P 90.4 0.17 5.8E-06 41.0 3.1 35 13-51 123-157 (165)
78 2ct7_A Ring finger protein 31; 84.4 0.59 2E-05 34.0 2.7 32 22-54 24-55 (86)
79 3m62_A Ubiquitin conjugation f 84.3 0.68 2.3E-05 47.8 4.0 49 164-225 890-939 (968)
80 1we9_A PHD finger family prote 82.9 0.36 1.2E-05 33.0 0.9 52 163-222 4-59 (64)
81 1wil_A KIAA1045 protein; ring 82.7 0.83 2.8E-05 33.7 2.8 30 165-207 15-47 (89)
82 1weo_A Cellulose synthase, cat 80.2 2.3 7.8E-05 31.7 4.4 56 165-225 16-71 (93)
83 3a43_A HYPD, hydrogenase nicke 77.4 1.3 4.6E-05 35.1 2.7 33 22-54 69-119 (139)
84 2l5u_A Chromodomain-helicase-D 76.9 0.79 2.7E-05 31.2 1.0 46 164-221 10-58 (61)
85 2con_A RUH-035 protein, NIN on 74.8 1.8 6.3E-05 31.3 2.6 30 23-56 15-44 (79)
86 2k16_A Transcription initiatio 74.5 0.53 1.8E-05 33.1 -0.4 51 164-223 17-70 (75)
87 1f62_A Transcription factor WS 74.3 1.1 3.7E-05 29.1 1.1 45 167-220 2-49 (51)
88 2ysm_A Myeloid/lymphoid or mix 73.1 1 3.5E-05 34.0 0.9 47 164-219 6-55 (111)
89 2yql_A PHD finger protein 21A; 72.8 0.45 1.5E-05 31.8 -1.1 45 164-220 8-55 (56)
90 2yt5_A Metal-response element- 72.3 0.76 2.6E-05 31.4 -0.0 52 163-223 4-63 (66)
91 1mm2_A MI2-beta; PHD, zinc fin 71.8 0.76 2.6E-05 31.3 -0.1 47 164-222 8-57 (61)
92 3h0g_L DNA-directed RNA polyme 69.2 2.6 8.8E-05 29.3 2.2 32 22-55 20-51 (63)
93 3o36_A Transcription intermedi 69.0 1.4 4.9E-05 36.1 1.0 47 165-223 4-53 (184)
94 2lbm_A Transcriptional regulat 65.7 4.4 0.00015 32.4 3.2 44 165-220 63-116 (142)
95 4fo9_A E3 SUMO-protein ligase 65.4 4.5 0.00015 37.2 3.6 49 165-224 215-266 (360)
96 3v43_A Histone acetyltransfera 65.2 5.9 0.0002 29.9 3.7 53 164-219 4-62 (112)
97 3i2d_A E3 SUMO-protein ligase 64.1 4.4 0.00015 37.4 3.3 49 165-225 249-301 (371)
98 1fp0_A KAP-1 corepressor; PHD 63.1 4.6 0.00016 29.7 2.7 47 164-222 24-73 (88)
99 2lv9_A Histone-lysine N-methyl 62.9 1.7 5.9E-05 32.3 0.3 47 164-220 27-75 (98)
100 3u5n_A E3 ubiquitin-protein li 62.0 1.7 5.9E-05 36.4 0.1 48 164-223 6-56 (207)
101 2puy_A PHD finger protein 21A; 61.8 1.3 4.3E-05 29.9 -0.6 46 165-222 5-53 (60)
102 1wep_A PHF8; structural genomi 61.4 5.1 0.00017 28.3 2.6 49 165-222 12-64 (79)
103 1xwh_A Autoimmune regulator; P 61.3 1.9 6.6E-05 29.6 0.3 46 164-221 7-55 (66)
104 1twf_L ABC10-alpha, DNA-direct 61.3 5.4 0.00018 28.1 2.6 41 13-55 18-58 (70)
105 2kn9_A Rubredoxin; metalloprot 59.7 9.4 0.00032 27.7 3.7 39 13-51 17-69 (81)
106 2vpb_A Hpygo1, pygopus homolog 59.4 5.8 0.0002 27.3 2.5 34 163-204 6-40 (65)
107 2e6r_A Jumonji/ARID domain-con 58.9 1.8 6.3E-05 31.9 -0.2 50 164-222 15-67 (92)
108 3v43_A Histone acetyltransfera 57.5 2.9 0.0001 31.6 0.7 47 166-220 62-111 (112)
109 1weu_A Inhibitor of growth fam 56.1 5.6 0.00019 29.4 2.1 47 164-223 35-87 (91)
110 3mjh_B Early endosome antigen 56.0 2.8 9.6E-05 25.5 0.3 15 164-178 4-18 (34)
111 4ayb_P DNA-directed RNA polyme 56.0 5.7 0.00019 26.0 1.8 34 23-56 3-37 (48)
112 2jne_A Hypothetical protein YF 55.9 6.7 0.00023 29.6 2.4 10 25-34 34-43 (101)
113 2ri7_A Nucleosome-remodeling f 52.9 3.4 0.00011 33.4 0.4 50 164-222 7-60 (174)
114 3ql9_A Transcriptional regulat 52.6 10 0.00034 29.8 3.1 44 165-220 57-110 (129)
115 2l43_A N-teminal domain from h 51.9 2.4 8.4E-05 31.0 -0.5 56 164-227 24-81 (88)
116 1wem_A Death associated transc 51.1 3.8 0.00013 28.7 0.4 48 165-223 16-72 (76)
117 3lqh_A Histone-lysine N-methyl 50.9 4.4 0.00015 33.7 0.8 53 165-223 2-65 (183)
118 2xb1_A Pygopus homolog 2, B-ce 50.6 8.6 0.00029 28.9 2.4 50 165-223 3-63 (105)
119 3shb_A E3 ubiquitin-protein li 50.5 2.1 7.3E-05 30.6 -1.0 28 194-221 46-77 (77)
120 2yw8_A RUN and FYVE domain-con 50.2 10 0.00035 27.0 2.6 35 164-206 18-52 (82)
121 2d8v_A Zinc finger FYVE domain 50.1 4.1 0.00014 28.6 0.4 34 20-53 5-39 (67)
122 1iml_A CRIP, cysteine rich int 49.9 6.7 0.00023 26.8 1.5 13 165-177 27-39 (76)
123 3t7l_A Zinc finger FYVE domain 48.6 12 0.00041 27.2 2.8 35 165-207 20-54 (90)
124 2kwj_A Zinc finger protein DPF 48.2 6.6 0.00023 29.7 1.4 51 166-218 2-58 (114)
125 1wee_A PHD finger family prote 47.3 2.9 0.0001 29.1 -0.7 49 164-222 15-67 (72)
126 1z2q_A LM5-1; membrane protein 47.0 14 0.00047 26.4 2.9 35 164-206 20-54 (84)
127 1wev_A Riken cDNA 1110020M19; 47.0 2.8 9.5E-05 30.6 -0.9 52 165-225 16-76 (88)
128 2dj7_A Actin-binding LIM prote 46.2 13 0.00044 26.0 2.6 39 165-223 15-53 (80)
129 2ku3_A Bromodomain-containing 46.2 16 0.00055 25.5 3.1 52 161-221 12-66 (71)
130 1joc_A EEA1, early endosomal a 45.9 13 0.00045 28.7 2.8 33 164-205 68-101 (125)
131 1vfy_A Phosphatidylinositol-3- 45.8 15 0.00052 25.4 2.9 32 165-205 11-43 (73)
132 2cu8_A Cysteine-rich protein 2 45.6 9.6 0.00033 26.0 1.8 40 165-224 9-48 (76)
133 2ysm_A Myeloid/lymphoid or mix 45.3 3.5 0.00012 30.9 -0.6 48 167-223 56-106 (111)
134 2kgg_A Histone demethylase jar 44.6 7.9 0.00027 25.1 1.1 44 167-219 4-52 (52)
135 1zbd_B Rabphilin-3A; G protein 44.3 13 0.00043 29.3 2.5 35 163-205 53-88 (134)
136 1wen_A Inhibitor of growth fam 44.2 10 0.00036 26.4 1.8 46 164-222 15-66 (71)
137 2jrp_A Putative cytoplasmic pr 44.1 14 0.00049 26.7 2.6 24 23-52 18-41 (81)
138 2b9d_A E7 protein; zinc finger 43.8 11 0.00037 25.0 1.7 26 25-50 10-49 (52)
139 1zfo_A LAsp-1; LIM domain, zin 43.6 14 0.00047 21.5 2.0 28 165-203 3-30 (31)
140 1wj0_A Squamosa promoter-bindi 43.2 11 0.00038 25.7 1.8 23 8-36 35-57 (60)
141 1wfk_A Zinc finger, FYVE domai 42.4 16 0.00055 26.4 2.7 52 164-224 8-66 (88)
142 2l9z_A PR domain zinc finger p 42.3 8.9 0.0003 24.0 1.0 17 17-33 5-21 (39)
143 1x4u_A Zinc finger, FYVE domai 42.2 18 0.0006 25.8 2.9 34 164-205 13-46 (84)
144 2k2d_A Ring finger and CHY zin 42.1 15 0.00053 26.2 2.5 34 23-57 37-70 (79)
145 1wew_A DNA-binding family prot 41.4 4.8 0.00017 28.5 -0.3 48 164-222 15-73 (78)
146 2jvx_A NF-kappa-B essential mo 41.4 6.3 0.00022 22.9 0.2 14 212-225 3-16 (28)
147 2cs3_A Protein C14ORF4, MY039 40.1 30 0.001 25.2 3.7 36 165-210 15-52 (93)
148 2co8_A NEDD9 interacting prote 39.2 15 0.00052 25.6 2.1 42 165-226 15-56 (82)
149 1x4k_A Skeletal muscle LIM-pro 38.9 22 0.00077 23.6 2.9 41 165-224 5-45 (72)
150 2gmg_A Hypothetical protein PF 38.9 20 0.00069 27.2 2.8 32 22-55 66-97 (105)
151 1dvp_A HRS, hepatocyte growth 38.6 16 0.00055 30.5 2.5 32 165-205 161-193 (220)
152 1y02_A CARP2, FYVE-ring finger 38.3 5 0.00017 31.2 -0.7 49 165-222 19-67 (120)
153 2ro1_A Transcription intermedi 37.7 6.2 0.00021 32.6 -0.3 46 165-222 2-50 (189)
154 1wyh_A SLIM 2, skeletal muscle 37.5 23 0.00079 23.5 2.7 41 165-224 5-45 (72)
155 2e6s_A E3 ubiquitin-protein li 37.1 5.7 0.0002 28.3 -0.5 44 167-220 28-76 (77)
156 3asl_A E3 ubiquitin-protein li 36.8 5.8 0.0002 27.6 -0.5 27 194-220 38-68 (70)
157 2jvm_A Uncharacterized protein 36.4 15 0.00051 26.6 1.6 23 33-55 43-66 (80)
158 2ewl_A Protein E7; HPV, oncopr 36.3 9.2 0.00031 25.8 0.4 25 25-49 15-53 (56)
159 3zyq_A Hepatocyte growth facto 36.2 20 0.00067 30.3 2.6 33 165-206 164-197 (226)
160 2jz8_A Uncharacterized protein 34.4 16 0.00054 26.9 1.5 23 33-55 39-61 (87)
161 1x4l_A Skeletal muscle LIM-pro 34.1 37 0.0013 22.5 3.4 40 165-223 5-46 (72)
162 1pft_A TFIIB, PFTFIIBN; N-term 33.5 24 0.00081 22.4 2.1 32 23-55 5-37 (50)
163 1wg2_A Zinc finger (AN1-like) 33.4 10 0.00036 26.3 0.4 27 23-55 15-41 (64)
164 1ryq_A DNA-directed RNA polyme 33.2 21 0.00073 25.0 2.0 20 25-51 13-32 (69)
165 1x61_A Thyroid receptor intera 31.6 40 0.0014 22.3 3.2 40 165-223 5-44 (72)
166 2jrr_A Uncharacterized protein 31.3 16 0.00054 25.5 1.0 16 40-55 38-53 (67)
167 3c6w_A P28ING5, inhibitor of g 30.8 8.3 0.00029 25.9 -0.5 44 164-220 8-57 (59)
168 1x63_A Skeletal muscle LIM-pro 30.6 35 0.0012 23.2 2.8 41 165-224 15-55 (82)
169 3ask_A E3 ubiquitin-protein li 30.6 13 0.00044 32.0 0.5 46 167-221 176-225 (226)
170 2vnf_A ING 4, P29ING4, inhibit 30.3 8.3 0.00028 25.9 -0.6 24 195-220 31-58 (60)
171 1a7i_A QCRP2 (LIM1); LIM domai 30.2 16 0.00054 25.2 0.9 40 165-224 7-46 (81)
172 1ul4_A SPL4, squamosa promoter 30.1 45 0.0015 24.8 3.4 25 8-38 40-64 (94)
173 2dar_A PDZ and LIM domain prot 29.8 37 0.0013 23.8 2.9 39 165-224 25-63 (90)
174 2zet_C Melanophilin; complex, 29.5 34 0.0012 27.4 2.8 48 164-220 67-116 (153)
175 1g47_A Pinch protein; LIM doma 29.5 37 0.0013 22.8 2.7 41 165-224 11-51 (77)
176 1wfp_A Zinc finger (AN1-like) 29.1 15 0.0005 26.2 0.6 28 22-55 24-51 (74)
177 1wfh_A Zinc finger (AN1-like) 29.1 17 0.0006 25.1 0.9 28 22-55 14-41 (64)
178 1ul5_A SPL7, squamosa promoter 28.8 48 0.0016 24.3 3.3 25 8-38 35-59 (88)
179 1x68_A FHL5 protein; four-and- 28.5 42 0.0014 22.6 2.9 40 165-223 5-46 (76)
180 1vd4_A Transcription initiatio 28.1 24 0.00081 22.6 1.4 35 21-55 12-52 (62)
181 3fyb_A Protein of unknown func 27.6 22 0.00076 26.8 1.3 13 198-210 41-53 (104)
182 2o35_A Hypothetical protein DU 27.5 22 0.00076 26.8 1.3 13 198-210 42-54 (105)
183 2jmo_A Parkin; IBR, E3 ligase, 27.1 32 0.0011 24.2 2.1 30 23-53 25-61 (80)
184 1z60_A TFIIH basal transcripti 27.1 17 0.00057 24.7 0.5 42 166-218 16-58 (59)
185 2i50_A Ubiquitin carboxyl-term 26.7 20 0.00067 27.8 0.9 13 23-35 96-108 (126)
186 4gzn_C ZFP-57, zinc finger pro 26.0 25 0.00085 23.1 1.2 34 21-54 2-44 (60)
187 2d8z_A Four and A half LIM dom 25.9 53 0.0018 21.5 3.0 38 165-223 5-42 (70)
188 1x62_A C-terminal LIM domain p 25.7 33 0.0011 23.4 1.9 38 165-223 15-52 (79)
189 2d8x_A Protein pinch; LIM doma 25.7 38 0.0013 22.4 2.2 39 165-224 5-43 (70)
190 1x4w_A Hypothetical protein FL 25.4 12 0.00042 26.1 -0.4 27 24-54 16-43 (67)
191 4gne_A Histone-lysine N-methyl 25.0 49 0.0017 24.9 2.9 49 163-225 13-66 (107)
192 1wff_A Riken cDNA 2810002D23 p 24.1 27 0.00091 25.5 1.2 30 20-54 22-51 (85)
193 1x64_A Alpha-actinin-2 associa 23.9 50 0.0017 23.0 2.6 39 165-224 25-63 (89)
194 2pk7_A Uncharacterized protein 23.8 18 0.0006 25.3 0.1 20 205-225 2-21 (69)
195 3a1b_A DNA (cytosine-5)-methyl 23.4 38 0.0013 27.5 2.1 26 194-219 98-132 (159)
196 3mpx_A FYVE, rhogef and PH dom 23.2 17 0.00059 32.9 0.0 49 165-221 375-429 (434)
197 2g6q_A Inhibitor of growth pro 23.1 14 0.00047 25.0 -0.5 43 165-220 11-59 (62)
198 2pv0_B DNA (cytosine-5)-methyl 22.8 48 0.0017 30.6 2.9 27 194-220 112-147 (386)
199 3vhs_A ATPase wrnip1; zinc fin 22.7 13 0.00046 21.2 -0.5 14 214-227 8-21 (29)
200 2d8y_A Eplin protein; LIM doma 22.6 41 0.0014 23.6 2.0 40 165-224 15-54 (91)
201 1v6g_A Actin binding LIM prote 22.3 61 0.0021 22.0 2.8 39 165-224 15-53 (81)
202 3f6q_B LIM and senescent cell 22.1 43 0.0015 21.9 1.9 42 165-225 11-52 (72)
203 1nyp_A Pinch protein; LIM doma 21.7 46 0.0016 21.6 1.9 39 165-224 5-43 (66)
204 4esj_A Type-2 restriction enzy 21.5 37 0.0013 29.5 1.7 28 25-52 36-66 (257)
205 1ltl_A DNA replication initiat 20.9 77 0.0026 27.3 3.8 36 16-51 127-165 (279)
206 2jne_A Hypothetical protein YF 20.6 43 0.0015 25.1 1.7 26 21-52 46-71 (101)
207 2l4z_A DNA endonuclease RBBP8, 20.6 36 0.0012 25.7 1.4 39 165-223 61-99 (123)
208 2jny_A Uncharacterized BCR; st 20.3 17 0.00058 25.3 -0.6 20 205-225 4-23 (67)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.72 E-value=3.6e-18 Score=128.87 Aligned_cols=82 Identities=35% Similarity=0.768 Sum_probs=70.2
Q ss_pred CCCCCCCCCCHHHHHhhhhheeccccccccccCccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhC
Q 041030 132 QPDAAPTPAPVSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHY 211 (249)
Q Consensus 132 ~~~~~~~pas~~~i~~lp~~~~~~~~~~~~~~~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~ 211 (249)
.......+++++.+++||.+.+...... ..++..|+||++.|..+.. ++.|+|+|+||..||..||+.
T Consensus 9 ~~~~~~~~~s~~~i~~lp~~~~~~~~~~--~~~~~~C~IC~~~~~~~~~---------~~~l~C~H~Fh~~Ci~~wl~~- 76 (91)
T 2l0b_A 9 SHMVANPPASKESIDALPEILVTEDHGA--VGQEMCCPICCSEYVKGDV---------ATELPCHHYFHKPCVSIWLQK- 76 (91)
T ss_dssp CCSSCCCCCCHHHHHTSCEEECCTTCSS--SSSCSEETTTTEECCTTCE---------EEEETTTEEEEHHHHHHHHTT-
T ss_pred CCCcCCCCCCHHHHHhCCCeeecccccc--cCCCCCCcccChhhcCCCc---------EEecCCCChHHHHHHHHHHHc-
Confidence 3456678999999999999988765432 2457899999999998877 889999999999999999999
Q ss_pred CCCCccccccccCC
Q 041030 212 STTCPVCRYELKDS 225 (249)
Q Consensus 212 ~~sCPvCR~~l~~~ 225 (249)
+.+||+||+.+.+.
T Consensus 77 ~~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 77 SGTCPVCRCMFPPP 90 (91)
T ss_dssp TCBCTTTCCBSSCC
T ss_pred CCcCcCcCccCCCC
Confidence 99999999998763
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.1e-17 Score=118.24 Aligned_cols=71 Identities=30% Similarity=0.715 Sum_probs=58.0
Q ss_pred HHHHHhhhhheeccccccccccCccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCcccccc
Q 041030 142 VSAVEALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYE 221 (249)
Q Consensus 142 ~~~i~~lp~~~~~~~~~~~~~~~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~ 221 (249)
++.++++|..++..... ..+...|+||++.|..+.. ++.++|+|+||..||.+||+. +.+||+||++
T Consensus 3 ~~~i~~lp~~~~~~~~~---~~~~~~C~IC~~~~~~~~~---------~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~ 69 (75)
T 1x4j_A 3 SGSSGQLPSYRFNPNNH---QSEQTLCVVCMCDFESRQL---------LRVLPCNHEFHAKCVDKWLKA-NRTCPICRAD 69 (75)
T ss_dssp CCCCSSCCCEEBCSSSC---SSSCCEETTTTEECCBTCE---------EEEETTTEEEETTHHHHHHHH-CSSCTTTCCC
T ss_pred HhhHhhCCcEEecCccc---cCCCCCCeECCcccCCCCe---------EEEECCCCHhHHHHHHHHHHc-CCcCcCcCCc
Confidence 34456677777654332 2347799999999998877 899999999999999999999 9999999998
Q ss_pred ccCC
Q 041030 222 LKDS 225 (249)
Q Consensus 222 l~~~ 225 (249)
+.+.
T Consensus 70 ~~~~ 73 (75)
T 1x4j_A 70 SGPS 73 (75)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=4.6e-15 Score=105.43 Aligned_cols=55 Identities=31% Similarity=0.864 Sum_probs=48.9
Q ss_pred cCccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCCCC
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDSII 227 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~~~ 227 (249)
.....|+||++.|..+.. ++.++|+|+||..||..|++. +.+||+||..+.....
T Consensus 12 ~~~~~C~IC~~~~~~~~~---------~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGED---------VRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQLP 66 (69)
T ss_dssp TCCCSBTTTTBCCCSSSC---------EEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSCCC
T ss_pred CCCCCCeeCCccccCCCc---------EEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCcCC
Confidence 346799999999988777 899999999999999999999 9999999999876543
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.55 E-value=2.4e-15 Score=102.23 Aligned_cols=50 Identities=32% Similarity=0.840 Sum_probs=46.0
Q ss_pred CccccccccccccccCCCCCCCCccceEEec-cCCccChhhHHHHHhhCCCCCcccccccc
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELP-CKHLYHSDCIVPWLRHYSTTCPVCRYELK 223 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~Lp-C~H~FH~~CI~~WL~~~~~sCPvCR~~l~ 223 (249)
++..|+||++.|..++. ++.++ |+|+||..||.+|++. +.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~---------~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEE---------ARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSC---------CEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCc---------eEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 47799999999998887 88898 9999999999999999 999999999874
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=7.5e-15 Score=105.71 Aligned_cols=54 Identities=33% Similarity=0.903 Sum_probs=48.3
Q ss_pred cCccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCCC
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDSI 226 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~~ 226 (249)
.+...|+||++.|..+.. ++.|+|+|+||..||.+|++. +.+||+||+++....
T Consensus 13 ~~~~~C~IC~~~~~~~~~---------~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDE---------LGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSC---------EEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCc---------EEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccccc
Confidence 346799999999998877 888999999999999999999 999999999986543
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=9.5e-15 Score=106.19 Aligned_cols=57 Identities=40% Similarity=1.057 Sum_probs=50.5
Q ss_pred cCccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCCCCCC
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDSIIGS 229 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~~~~~ 229 (249)
.+...|+||++.|..... ++.++|+|+||..||..|++. +.+||+||..+....+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~---------~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 13 GSGLECPVCKEDYALGES---------VRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSSCCCTTTTSCCCTTSC---------EEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCC
T ss_pred CCCCCCeeCCccccCCCC---------EEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCC
Confidence 347899999999998777 889999999999999999999 899999999998766543
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=7.2e-15 Score=108.58 Aligned_cols=64 Identities=22% Similarity=0.543 Sum_probs=44.6
Q ss_pred cCccccccccccccccCCCCCC--CCccceEEec-cCCccChhhHHHHHhhCCCCCccccccccCCCC
Q 041030 163 NEVQCCPICKEEFRVRDDVDDD--SDEVMIMELP-CKHLYHSDCIVPWLRHYSTTCPVCRYELKDSII 227 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~--~~~~~v~~Lp-C~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~~~ 227 (249)
.++..|+||++.|...-....+ ..+..++.++ |+|+||.+||.+||+. +++||+||+++....+
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~~~ 79 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVVQRI 79 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCEEEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcchhhc
Confidence 3467899999998652000000 0001155555 9999999999999999 9999999999875543
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.49 E-value=2.3e-14 Score=97.13 Aligned_cols=51 Identities=33% Similarity=0.713 Sum_probs=44.4
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCcccccccc
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELK 223 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~ 223 (249)
+...|+||++.|..+... ++.++|+|+||..||.+|++. +.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~--------~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVV--------AHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSC--------EEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcC--------eEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 367999999999765431 788899999999999999999 899999999875
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.44 E-value=5.6e-14 Score=99.92 Aligned_cols=55 Identities=27% Similarity=0.696 Sum_probs=46.8
Q ss_pred cCcccccccccccccc----CCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCCCC
Q 041030 163 NEVQCCPICKEEFRVR----DDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDSII 227 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~----~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~~~ 227 (249)
.+...|+||++.|... .. ++.++|+|+||..||.+|++. +.+||+||..+....+
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~---------~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRL---------IVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCC---------EEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSC
T ss_pred CCCCCCcccChhhhccccccCC---------eEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhhe
Confidence 3478999999999763 23 688899999999999999999 9999999999875543
No 10
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.44 E-value=6.4e-15 Score=116.88 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=9.9
Q ss_pred HhhhhheeccccccccccCccccccccccccccCCCCCC------CCccceEEeccCCccChhhHHHHHhhCCCCCcccc
Q 041030 146 EALKRVRISESTQLTRSNEVQCCPICKEEFRVRDDVDDD------SDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCR 219 (249)
Q Consensus 146 ~~lp~~~~~~~~~~~~~~~~~~C~ICle~f~~~~~~~~~------~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR 219 (249)
..+...++..-.......++..|+||++.|......... ..+..++.++|+|.||..||.+||+. +++||+||
T Consensus 29 ~r~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr 107 (117)
T 4a0k_B 29 KRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDN 107 (117)
T ss_dssp CSEEEEEEEEEEEEEECCCC------------------------------------------------------------
T ss_pred CceEEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCC
Confidence 334444444444445556678999999999864321111 11223555689999999999999999 99999999
Q ss_pred ccccCC
Q 041030 220 YELKDS 225 (249)
Q Consensus 220 ~~l~~~ 225 (249)
+++.-.
T Consensus 108 ~~~~~~ 113 (117)
T 4a0k_B 108 REWEFQ 113 (117)
T ss_dssp ------
T ss_pred Ceeeee
Confidence 987543
No 11
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.43 E-value=3.3e-14 Score=110.80 Aligned_cols=63 Identities=25% Similarity=0.485 Sum_probs=47.4
Q ss_pred ccccCccccccccccccccCCCCC------CCCccceEEeccCCccChhhHHHHHhhCCCCCcccccccc
Q 041030 160 TRSNEVQCCPICKEEFRVRDDVDD------DSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELK 223 (249)
Q Consensus 160 ~~~~~~~~C~ICle~f~~~~~~~~------~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~ 223 (249)
....++..|+||++.|........ ...+-.++.++|+|.||..||.+||.. +.+||+||+++.
T Consensus 32 ~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 32 AWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp EESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred ecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 344567899999999986522110 111223778899999999999999999 999999999864
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=8.7e-14 Score=98.09 Aligned_cols=56 Identities=27% Similarity=0.729 Sum_probs=45.3
Q ss_pred cCccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccC
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
.+...|+||++.|..... ....++.++|+|+||..||..|++. +.+||+||..|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~-----~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQ-----NGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTT-----TTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCcccCcccccccc-----ccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 347899999999986421 0011588999999999999999999 9999999998854
No 13
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.42 E-value=1.7e-13 Score=106.32 Aligned_cols=61 Identities=25% Similarity=0.461 Sum_probs=44.6
Q ss_pred ccccccccccccccCCCCCC------CCccceEEeccCCccChhhHHHHHhh----CCCCCccccccccCC
Q 041030 165 VQCCPICKEEFRVRDDVDDD------SDEVMIMELPCKHLYHSDCIVPWLRH----YSTTCPVCRYELKDS 225 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~------~~~~~v~~LpC~H~FH~~CI~~WL~~----~~~sCPvCR~~l~~~ 225 (249)
+..|+||++.|..+...... .....++.++|+|+||..||..||.. .+.+||+||..+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 56999999999875421110 01123567889999999999999952 177999999988654
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.41 E-value=1.1e-13 Score=96.16 Aligned_cols=56 Identities=27% Similarity=0.724 Sum_probs=45.3
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCCC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDSI 226 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~~ 226 (249)
+..|+||++.+..... ....++.++|+|+||..||.+|++. +.+||+||..+....
T Consensus 3 ~~~C~IC~~~~~~~~~-----~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQ-----NGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKR 58 (64)
T ss_dssp CCBCTTTCCBHHHHHH-----TTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTC
T ss_pred CCCCCccChhhhCccc-----cCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccc
Confidence 6799999999986410 0011678899999999999999999 999999999987543
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=5.6e-13 Score=95.63 Aligned_cols=53 Identities=25% Similarity=0.496 Sum_probs=45.4
Q ss_pred cCccccccccccccccCCCCCCCCccceEEe-ccCCccChhhHHHHHhhCCCCCccccccccCCCCC
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMEL-PCKHLYHSDCIVPWLRHYSTTCPVCRYELKDSIIG 228 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~L-pC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~~~~ 228 (249)
.+...|+||++.|.. .+.+ +|+|.||..||..|++. +.+||+||..+....+.
T Consensus 13 ~~~~~C~IC~~~~~~------------p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 13 TPYILCSICKGYLID------------ATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CGGGSCTTTSSCCSS------------CEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCCChHHHC------------cCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccc
Confidence 347899999999987 4455 89999999999999999 99999999999765543
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.37 E-value=3.1e-13 Score=95.52 Aligned_cols=49 Identities=37% Similarity=0.910 Sum_probs=43.4
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccC
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
.+..|+||++.+... ++.++|+|.||..||..|++. +.+||+||..+..
T Consensus 4 ~~~~C~IC~~~~~~~-----------~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNY-----------SMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSC-----------EEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCC-----------cEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 367999999998752 578999999999999999999 9999999998864
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2e-13 Score=97.79 Aligned_cols=52 Identities=27% Similarity=0.600 Sum_probs=45.4
Q ss_pred cCccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCCCC
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDSII 227 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~~~ 227 (249)
.+...|+||++.+.. .+.++|+|+||..||..|+.. +..||+||..+....+
T Consensus 13 ~~~~~C~IC~~~~~~------------~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 13 LTVPECAICLQTCVH------------PVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPEDFL 64 (71)
T ss_dssp SSCCBCSSSSSBCSS------------EEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHHHH
T ss_pred CCCCCCccCCcccCC------------CEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHhhc
Confidence 346899999999876 778899999999999999999 8999999999865433
No 18
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=4.5e-13 Score=95.77 Aligned_cols=53 Identities=25% Similarity=0.589 Sum_probs=45.0
Q ss_pred cCccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhh--CCCCCccccccccCCCC
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRH--YSTTCPVCRYELKDSII 227 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~--~~~sCPvCR~~l~~~~~ 227 (249)
.+...|+||++.|.. .+.++|+|.||..||..|++. ++..||+||..+....+
T Consensus 18 ~~~~~C~IC~~~~~~------------~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 18 QEEVICPICLDILQK------------PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCBCTTTCSBCSS------------EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred ccCCEeccCCcccCC------------eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 347899999999986 777899999999999999973 26689999999876554
No 19
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=6.3e-13 Score=93.70 Aligned_cols=52 Identities=17% Similarity=0.431 Sum_probs=43.7
Q ss_pred cCccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCCC
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDSI 226 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~~ 226 (249)
.+...|+||++.+.. .+.++|+|+||..||..|++.++..||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~------------p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCS------------PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEESS------------CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHhcC------------eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 347899999999986 4458999999999999999643779999999987654
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.33 E-value=1.1e-12 Score=94.78 Aligned_cols=49 Identities=31% Similarity=0.636 Sum_probs=42.6
Q ss_pred cCccccccccccccccCCCCCCCCccceEEec-cCCccChhhHHHHHhhCC--CCCccccccccC
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMELP-CKHLYHSDCIVPWLRHYS--TTCPVCRYELKD 224 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~Lp-C~H~FH~~CI~~WL~~~~--~sCPvCR~~l~~ 224 (249)
.+...|+||++.|.. .+.++ |+|.||..||..|++. + .+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~------------p~~~~~CgH~fC~~Ci~~~~~~-~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMTD------------AVVIPCCGNSYCDECIRTALLE-SDEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCTT------------CEECSSSCCEECTTHHHHHHHH-SSSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHhC------------CeEcCCCCCHHHHHHHHHHHHh-cCCCcCCCCCCcCCC
Confidence 347899999999986 67799 9999999999999997 5 689999997644
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.1e-12 Score=95.97 Aligned_cols=48 Identities=21% Similarity=0.570 Sum_probs=43.4
Q ss_pred cCccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCcccccccc
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELK 223 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~ 223 (249)
.....|+||++.|.. .+.++|+|+||..||..|++. ..+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~------------p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN------------PVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS------------EEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC------------eeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 346799999999976 667999999999999999999 999999999985
No 22
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.4e-12 Score=96.61 Aligned_cols=53 Identities=28% Similarity=0.744 Sum_probs=44.3
Q ss_pred cCccccccccccccccCCCCCCCCccceEEeccC-----CccChhhHHHHHhhCC--CCCccccccccCCC
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCK-----HLYHSDCIVPWLRHYS--TTCPVCRYELKDSI 226 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~-----H~FH~~CI~~WL~~~~--~sCPvCR~~l~~~~ 226 (249)
.++..|.||+++|..++. + .+||+ |.||.+||.+||.. + .+||+||+++....
T Consensus 13 ~~~~~C~IC~~~~~~~~~---------l-~~pC~C~Gs~h~fH~~Cl~~Wl~~-~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESP---------L-ITPCHCTGSLHFVHQACLQQWIKS-SDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSC---------E-ECSSSCCSSSCCEETTHHHHHHHH-HCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCe---------e-EeccccCCcCCeeCHHHHHHHHhh-CCCCCCCCCCCeeecCc
Confidence 346799999999987654 4 68996 99999999999998 5 48999999997543
No 23
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.31 E-value=1.4e-12 Score=94.52 Aligned_cols=50 Identities=26% Similarity=0.424 Sum_probs=44.5
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCC
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDS 225 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~ 225 (249)
+...|+||++.|.. .+.++|||.||..||..|+..++.+||+||..+...
T Consensus 7 ~~~~C~IC~~~~~~------------Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKD------------PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSS------------EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred ccCCCCCccccccC------------CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 37899999999987 777899999999999999987678999999998654
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=2.3e-12 Score=95.02 Aligned_cols=56 Identities=30% Similarity=0.548 Sum_probs=46.9
Q ss_pred cCccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCC---CCCccccccccCCCC
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYS---TTCPVCRYELKDSII 227 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~---~sCPvCR~~l~~~~~ 227 (249)
.+...|+||++.|...... ++.++|+|.||..||..|++. + ..||+||..+....+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~--------~~~~~CgH~fC~~Ci~~~~~~-~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLR--------PKLLHCGHTICRQCLEKLLAS-SINGVRCPFCSKITRITSL 71 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSC--------EEECSSSCEEEHHHHHHHHHH-CSSCBCCTTTCCCBCCSST
T ss_pred cCCCCCccCCccccccCCC--------eEECCCCChhhHHHHHHHHHc-CCCCcCCCCCCCcccchhH
Confidence 3478999999999875531 678899999999999999998 5 789999999876544
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.30 E-value=6.4e-13 Score=107.08 Aligned_cols=48 Identities=35% Similarity=0.849 Sum_probs=43.6
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDS 225 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~ 225 (249)
+..|+||++.|.. ++.++|||.||..||..|+.. +.+||+||.++...
T Consensus 53 ~~~C~iC~~~~~~------------~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIE------------AVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSS------------EEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCC------------ceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC
Confidence 5689999999976 778999999999999999999 99999999998643
No 26
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.28 E-value=8.5e-13 Score=100.87 Aligned_cols=48 Identities=35% Similarity=0.668 Sum_probs=43.1
Q ss_pred ccccccccccccccCCCCCCCCccceEE-eccCCccChhhHHHHHhhCC-CCCccccccccCC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIME-LPCKHLYHSDCIVPWLRHYS-TTCPVCRYELKDS 225 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~-LpC~H~FH~~CI~~WL~~~~-~sCPvCR~~l~~~ 225 (249)
...|+||++.|.. .+. ++|||.||..||..|+.. + .+||+||..+...
T Consensus 22 ~~~C~IC~~~~~~------------p~~~~~CgH~FC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 22 VFRCFICMEKLRD------------ARLCPHCSKLCCFSCIRRWLTE-QRAQCPHCRAPLQLR 71 (100)
T ss_dssp HTBCTTTCSBCSS------------EEECTTTCCEEEHHHHHHHHHH-TCSBCTTTCCBCCGG
T ss_pred CCCCccCCccccC------------ccccCCCCChhhHHHHHHHHHH-CcCCCCCCCCcCCHH
Confidence 7899999999986 666 899999999999999999 6 7999999998644
No 27
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.27 E-value=2.9e-12 Score=90.00 Aligned_cols=55 Identities=27% Similarity=0.518 Sum_probs=44.2
Q ss_pred ccccccccc-cccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCCCC
Q 041030 165 VQCCPICKE-EFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDSII 227 (249)
Q Consensus 165 ~~~C~ICle-~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~~~ 227 (249)
+..|+||++ .|...... ++.++|||+||..||..|+..+..+||+||..+....+
T Consensus 3 ~~~C~IC~~~~~~~~~~~--------~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLK--------LMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp TTCCSTTTTHHHHCSSCC--------EEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCcCCcCCCCccCCCccC--------eecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 679999999 77665431 45689999999999999987646789999999876544
No 28
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.2e-12 Score=93.04 Aligned_cols=48 Identities=29% Similarity=0.813 Sum_probs=42.5
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCC
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDS 225 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~ 225 (249)
+...|+||++.+.. +.++|+|.||..||..|+.. +.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~-------------~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRAD-------------LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCCS-------------EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCccC-------------cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCC
Confidence 46899999999875 35899999999999999998 99999999998754
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=5.3e-12 Score=87.98 Aligned_cols=44 Identities=27% Similarity=0.632 Sum_probs=38.3
Q ss_pred cCccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhh--CCCCCccc
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRH--YSTTCPVC 218 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~--~~~sCPvC 218 (249)
.+...|+||++.|.. .+.++|+|+||..||..|++. ++..||+|
T Consensus 18 ~~~~~C~IC~~~~~~------------p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK------------PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS------------CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCC------------eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 447899999999986 677899999999999999984 26689998
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.23 E-value=9.2e-12 Score=90.73 Aligned_cols=50 Identities=30% Similarity=0.620 Sum_probs=43.3
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhC-----CCCCccccccccCC
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHY-----STTCPVCRYELKDS 225 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~-----~~sCPvCR~~l~~~ 225 (249)
+...|+||++.|.. .+.++|+|.||..||..|+... ...||+||..+...
T Consensus 18 ~~~~C~IC~~~~~~------------p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 18 EEVTCPICLELLKE------------PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTTSCTTTCSCCSS------------CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred cCCCCcCCChhhCc------------ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 47899999999976 5678999999999999999972 56899999998754
No 31
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.22 E-value=4.4e-12 Score=99.60 Aligned_cols=54 Identities=28% Similarity=0.704 Sum_probs=46.6
Q ss_pred Ccccccccccccccc----CCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCCCC
Q 041030 164 EVQCCPICKEEFRVR----DDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDSII 227 (249)
Q Consensus 164 ~~~~C~ICle~f~~~----~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~~~ 227 (249)
+...|+||++.|... .. ++.++|||+||..||..||+. +.+||+||+.+....+
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~---------~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRL---------IVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRY 63 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCC---------EEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCE
T ss_pred CCCCCcccChhhhCccccccC---------eEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCccccc
Confidence 367999999999764 23 588999999999999999999 9999999999976544
No 32
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.9e-11 Score=88.99 Aligned_cols=53 Identities=30% Similarity=0.678 Sum_probs=44.3
Q ss_pred cCccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhh-----CCCCCccccccccCCCC
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRH-----YSTTCPVCRYELKDSII 227 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~-----~~~sCPvCR~~l~~~~~ 227 (249)
.+...|+||++.|.. .+.++|+|.||..||..|+.. +...||+||..+....+
T Consensus 17 ~~~~~C~IC~~~~~~------------p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ------------PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCCTTTCSCCSS------------CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred cCCCCCCCCCcccCC------------ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 347899999999976 456899999999999999986 26789999999876543
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.20 E-value=5.7e-12 Score=95.56 Aligned_cols=47 Identities=36% Similarity=0.756 Sum_probs=42.5
Q ss_pred ccccccccccccccCCCCCCCCccceEEe-ccCCccChhhHHHHHhhCCCCCccccccccC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMEL-PCKHLYHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~L-pC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
...|+||++.|.. .+.+ +|||.||..||..|+.. +.+||+||..+..
T Consensus 22 ~~~C~IC~~~~~~------------p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI------------AMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS------------EEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred CCCcccCChhhCC------------cCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCCh
Confidence 6799999999987 5566 89999999999999998 8999999998865
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.20 E-value=8.8e-12 Score=96.07 Aligned_cols=48 Identities=27% Similarity=0.692 Sum_probs=43.2
Q ss_pred ccccccccccccccCCCCCCCCccceEEe-ccCCccChhhHHHHHhhCCCCCccccccccCC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMEL-PCKHLYHSDCIVPWLRHYSTTCPVCRYELKDS 225 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~L-pC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~ 225 (249)
...|+||++.|.. .+.+ +|||.||..||..|+.. +.+||+||..+...
T Consensus 15 ~~~C~IC~~~~~~------------p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 15 HLMCVLCGGYFID------------ATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKT 63 (108)
T ss_dssp GTBCTTTSSBCSS------------EEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSS
T ss_pred cCCCccCChHHhC------------cCEeCCCCChhhHHHHHHHHHh-CCcCcCCCcccccc
Confidence 7899999999986 5566 99999999999999999 89999999998653
No 35
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.19 E-value=8.1e-12 Score=98.53 Aligned_cols=48 Identities=29% Similarity=0.589 Sum_probs=42.9
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
...|+||++.|.. .+.++|||.||..||..|+..+..+||+||..+..
T Consensus 52 ~~~C~IC~~~~~~------------p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR------------PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS------------EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcC------------cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 6799999999986 77889999999999999998635599999999865
No 36
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.19 E-value=2.4e-12 Score=93.16 Aligned_cols=51 Identities=29% Similarity=0.585 Sum_probs=43.2
Q ss_pred cCccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhC------CCCCccccccccCC
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHY------STTCPVCRYELKDS 225 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~------~~sCPvCR~~l~~~ 225 (249)
.+...|+||++.|.. .+.++|||.||..||..|+... ...||+||..+...
T Consensus 10 ~~~~~C~IC~~~~~~------------p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLTE------------PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECSS------------CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCcccCC------------eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 347899999999976 4558999999999999999862 56899999998764
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1e-11 Score=84.64 Aligned_cols=44 Identities=27% Similarity=0.757 Sum_probs=37.0
Q ss_pred cCccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhh--CCCCCccc
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRH--YSTTCPVC 218 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~--~~~sCPvC 218 (249)
.+...|+||++.+.. .+.++|+|+||..||..|+.. .+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~------------p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE------------PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSS------------CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCc------------cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 347899999999987 455899999999999999553 27899998
No 38
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.16 E-value=1.7e-11 Score=91.54 Aligned_cols=49 Identities=29% Similarity=0.607 Sum_probs=42.2
Q ss_pred cCccccccccccccccCCCCCCCCccceEEec-cCCccChhhHHHHHhhC-CCCCcccccccc
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMELP-CKHLYHSDCIVPWLRHY-STTCPVCRYELK 223 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~Lp-C~H~FH~~CI~~WL~~~-~~sCPvCR~~l~ 223 (249)
.+...|+||++.|.. .+.++ |||.||..||..|+... +..||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~------------p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTD------------AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSS------------CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcC------------ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 347899999999986 77899 99999999999999762 358999999873
No 39
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.15 E-value=1.7e-11 Score=100.55 Aligned_cols=50 Identities=24% Similarity=0.513 Sum_probs=43.9
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCC
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDS 225 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~ 225 (249)
+...|+||++.|.. .+.++|+|.||..||..|+..+..+||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~------------pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ------------PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS------------EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC------------CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 36899999999987 777999999999999999998344899999998765
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.14 E-value=1.2e-11 Score=97.14 Aligned_cols=56 Identities=27% Similarity=0.714 Sum_probs=45.4
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCCC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDSI 226 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~~ 226 (249)
...|+||++.|..... ....++.++|+|+||..||.+|++. +++||+||..+....
T Consensus 72 ~~~C~iC~~~~~~~~~-----~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 72 TVSCPICMDGYSEIVQ-----NGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKR 127 (133)
T ss_dssp SCBCTTTCCBHHHHHH-----TTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCccccccc-----cCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhc
Confidence 6789999999986311 0011578899999999999999999 999999999987643
No 41
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.14 E-value=5.3e-12 Score=98.27 Aligned_cols=49 Identities=29% Similarity=0.595 Sum_probs=43.2
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccC
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
++..|+||++.|.. .+.++|||.||..||..|+..++.+||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~------------p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVE------------PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSS------------CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCc------------eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 36899999999986 67789999999999999998756789999999863
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.12 E-value=2.1e-11 Score=100.62 Aligned_cols=48 Identities=35% Similarity=0.789 Sum_probs=42.2
Q ss_pred ccccccccccccccCCCCCCCCccceEEe-ccCCccChhhHHHHHhhCCCCCccccccccC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMEL-PCKHLYHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~L-pC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
...|+||++.|.. .+.+ +|||.||..||..|+..++..||+||..+..
T Consensus 54 ~~~C~IC~~~~~~------------p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKN------------TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSS------------EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhC------------cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 6799999999987 5555 8999999999999999767789999999854
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.12 E-value=1.8e-11 Score=94.16 Aligned_cols=50 Identities=24% Similarity=0.755 Sum_probs=42.7
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCC---CCCccccccccCCCC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYS---TTCPVCRYELKDSII 227 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~---~sCPvCR~~l~~~~~ 227 (249)
...|+||++.|.. .+.++|||.||..||..|+.. + .+||+||..+....+
T Consensus 21 ~~~C~IC~~~~~~------------p~~~~CgH~fC~~Ci~~~~~~-~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 21 ILECPICLELIKE------------PVSTKCDHIFCKFCMLKLLNQ-KKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HTSCSSSCCCCSS------------CCBCTTSCCCCSHHHHHHHHS-SSSSCCCTTTSCCCCTTTC
T ss_pred CCCCcccChhhcC------------eEECCCCCHHHHHHHHHHHHh-CCCCCCCcCCCCcCCHhhc
Confidence 6799999999976 455899999999999999997 4 389999999876544
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.10 E-value=3.5e-11 Score=94.27 Aligned_cols=51 Identities=29% Similarity=0.634 Sum_probs=43.9
Q ss_pred cCccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCC
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDS 225 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~ 225 (249)
.+...|+||++.|.. .+.++|||.||..||..|+.....+||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~------------p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALRE------------AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSS------------EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcC------------eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 347899999999986 677899999999999999998334999999998654
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.09 E-value=3.6e-11 Score=93.64 Aligned_cols=51 Identities=31% Similarity=0.680 Sum_probs=44.5
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCCCC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDSII 227 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~~~ 227 (249)
...|+||++.|.. .+.++|||.||..||..|+.....+||+||..+....+
T Consensus 23 ~~~C~IC~~~~~~------------p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 23 SISCQICEHILAD------------PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HTBCTTTCSBCSS------------EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCcHhcC------------cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 6799999999986 67799999999999999999756689999999876543
No 46
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.06 E-value=2.5e-11 Score=83.35 Aligned_cols=50 Identities=24% Similarity=0.483 Sum_probs=41.5
Q ss_pred cCccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCCCCC
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDSIIG 228 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~~~~ 228 (249)
.+...|+||++.|.. .+.|+|+|.||..||..| ...||+||+.+.....|
T Consensus 4 ~~~~~C~IC~~~~~~------------p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~~ 53 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC------------PKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADT 53 (56)
T ss_dssp CCCSSCSSSCSSCBC------------CSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSSC
T ss_pred ccCCCceEeCCccCC------------eEEcCCCCcccHHHHccC----CCCCCcCCcEeecCCcC
Confidence 347899999999987 567999999999999884 66899999998765443
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.06 E-value=8.7e-11 Score=87.43 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=44.8
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCC
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDS 225 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~ 225 (249)
+...|+||++.|.+ .+.++|||.|+..||..|+.. +.+||+||..+...
T Consensus 13 ~~~~CpI~~~~m~d------------PV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD------------PVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTES 61 (85)
T ss_dssp TTTBCTTTCSBCSS------------EEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGG
T ss_pred hheECcccCchhcC------------CeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChH
Confidence 37899999999998 888999999999999999998 99999999988643
No 48
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.05 E-value=4.5e-11 Score=97.14 Aligned_cols=51 Identities=24% Similarity=0.458 Sum_probs=43.7
Q ss_pred cCccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCC
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDS 225 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~ 225 (249)
.+...|+||++.|.. .++++|||.||..||..|++.+..+||+||.++...
T Consensus 29 ~~~~~C~IC~~~~~~------------pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 29 EAKYLCSACRNVLRR------------PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp CGGGBCTTTCSBCSS------------EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred CcCcCCCCCChhhcC------------cEECCCCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 347899999999987 677899999999999999998345899999987443
No 49
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=1.4e-10 Score=84.81 Aligned_cols=50 Identities=20% Similarity=0.486 Sum_probs=41.9
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCC--CCCccccccccCC
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYS--TTCPVCRYELKDS 225 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~--~sCPvCR~~l~~~ 225 (249)
....|+||++.|..+. +-..|+|.||..||.+||+. + .+||+||.++...
T Consensus 14 ~i~~C~IC~~~i~~g~-----------~C~~C~h~fH~~Ci~kWl~~-~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ-----------SCETCGIRMHLPCVAKYFQS-NAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSCBCSSSCCBCSSSE-----------ECSSSCCEECHHHHHHHSTT-CSSCCCTTTCSCCCSC
T ss_pred CCCcCcchhhHcccCC-----------ccCCCCchhhHHHHHHHHHh-cCCCCCCCCcCcCCCC
Confidence 3579999999998643 23369999999999999998 6 8999999987644
No 50
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.05 E-value=8.8e-11 Score=86.39 Aligned_cols=57 Identities=19% Similarity=0.397 Sum_probs=43.4
Q ss_pred cCccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCCCC
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDSII 227 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~~~ 227 (249)
.++..|+||++.+...... +..++|||.||..||..|+..+..+||+||+.+....+
T Consensus 9 ~~~~~CpICle~~~~~d~~--------~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDIN--------FFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTT--------CCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCcccccc--------ccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 3478999999988653220 22234999999999999886547899999999976554
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.02 E-value=1.5e-10 Score=81.62 Aligned_cols=46 Identities=24% Similarity=0.513 Sum_probs=40.9
Q ss_pred ccccccccccccccCCCCCCCCccceEEe--ccCCc-cChhhHHHHHhhCCCCCcccccccc
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMEL--PCKHL-YHSDCIVPWLRHYSTTCPVCRYELK 223 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~L--pC~H~-FH~~CI~~WL~~~~~sCPvCR~~l~ 223 (249)
+..|.||++.+.. ++.+ ||||+ |+..|+..|++. +..||+||+.+.
T Consensus 8 ~~~C~IC~~~~~~------------~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 8 IEPCVICQGRPKN------------GCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GSCCTTTSSSCSC------------EEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred cCCCCcCCCCCCC------------EEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 6799999999876 5555 99999 899999999998 899999999884
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.02 E-value=1.5e-10 Score=88.84 Aligned_cols=49 Identities=22% Similarity=0.252 Sum_probs=44.9
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCC
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDS 225 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~ 225 (249)
+...|+||++.|.+ .+.++|||.|+..||..||.. +.+||+||..+...
T Consensus 28 ~~~~CpI~~~~m~d------------PV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 28 DEFRDPLMDTLMTD------------PVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTES 76 (100)
T ss_dssp TTTBCTTTCSBCSS------------EEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTT
T ss_pred HhhCCcCccCcccC------------CeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChh
Confidence 37899999999998 888999999999999999998 99999999988653
No 53
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.00 E-value=2.2e-10 Score=87.64 Aligned_cols=49 Identities=20% Similarity=0.112 Sum_probs=44.9
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccC-CccChhhHHHHHhhCCCCCccccccccCC
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCK-HLYHSDCIVPWLRHYSTTCPVCRYELKDS 225 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~-H~FH~~CI~~WL~~~~~sCPvCR~~l~~~ 225 (249)
+.+.|+||++.|.+ .+.++|| |.|+..||..||.. +.+||+||..|...
T Consensus 21 ~~~~CpI~~~~m~d------------PV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD------------PVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMD 70 (98)
T ss_dssp TTTBCTTTCSBCSS------------EEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTT
T ss_pred HhcCCcCccccccC------------CeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChh
Confidence 37899999999998 8889999 99999999999998 89999999988653
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.93 E-value=5.6e-10 Score=78.48 Aligned_cols=46 Identities=22% Similarity=0.538 Sum_probs=40.4
Q ss_pred ccccccccccccccCCCCCCCCccceEEe--ccCCc-cChhhHHHHHhhCCCCCcccccccc
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMEL--PCKHL-YHSDCIVPWLRHYSTTCPVCRYELK 223 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~L--pC~H~-FH~~CI~~WL~~~~~sCPvCR~~l~ 223 (249)
...|.||++.+.. ++.+ ||||+ |+..|+..|.+. +..||+||..+.
T Consensus 7 ~~~C~IC~~~~~~------------~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRD------------GNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSC------------EEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred CCCCcccCCcCCC------------eEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 6799999998776 4455 99999 999999999988 889999999884
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.90 E-value=7.7e-10 Score=103.59 Aligned_cols=49 Identities=35% Similarity=0.830 Sum_probs=43.1
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDS 225 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~ 225 (249)
...|+||++.+.. ++.+||||+||..||..|+...+.+||+||..+...
T Consensus 332 ~~~C~ICle~~~~------------pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKD------------VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCC------------EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCC------------eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 4699999999976 888999999999999999993388999999988653
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.88 E-value=3e-10 Score=88.77 Aligned_cols=45 Identities=29% Similarity=0.642 Sum_probs=39.6
Q ss_pred ccccccccccccccCCCCCCCCccceEEe-ccCCccChhhHHHHHhhCCCCCccccccccC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMEL-PCKHLYHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~L-pC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
...|+||++.|.. .+.+ +|||.||..||..|+. ..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~------------pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILRE------------PVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCSS------------CBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSC
T ss_pred CCCCCCCChHhhC------------ccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCcc
Confidence 6799999999986 5567 8999999999999987 589999999854
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.88 E-value=9e-10 Score=96.45 Aligned_cols=49 Identities=24% Similarity=0.243 Sum_probs=43.6
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccC
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
+...|+||++.|.+ .++++|||.||..||..|+..+..+||+||..+..
T Consensus 207 ~~~~c~i~~~~~~d------------Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMRE------------PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSS------------EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcC------------CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 47899999999998 88899999999999999999844559999998854
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.87 E-value=9.5e-10 Score=90.99 Aligned_cols=51 Identities=29% Similarity=0.634 Sum_probs=44.1
Q ss_pred cCccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCC
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDS 225 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~ 225 (249)
.+...|+||++.|.. .+.++|||+||..||..|+..+..+||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~------------pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALRE------------AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSS------------EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcC------------cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 347899999999987 677899999999999999987345999999988653
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.85 E-value=4.1e-10 Score=81.43 Aligned_cols=43 Identities=28% Similarity=0.634 Sum_probs=38.1
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCc-cChhhHHHHHhhCCCCCccccccccC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHL-YHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~-FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
+..|+||++.+.. ++.+||+|. ||..|+..| ..||+||..+..
T Consensus 24 ~~~C~iC~~~~~~------------~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA------------IVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC------------EEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC------------EEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 6799999999877 788999999 999999988 479999998754
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=1.6e-09 Score=81.87 Aligned_cols=48 Identities=31% Similarity=0.641 Sum_probs=41.0
Q ss_pred CccccccccccccccCCCCCCCCccceEEec-cCCccChhhHHHHHhhC-----CCCCcc--cccc-cc
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELP-CKHLYHSDCIVPWLRHY-----STTCPV--CRYE-LK 223 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~Lp-C~H~FH~~CI~~WL~~~-----~~sCPv--CR~~-l~ 223 (249)
+...|+||++.|.+ .+.++ |||+|+..||..||..+ ..+||+ |+.. +.
T Consensus 6 ~~~~CPI~~~~~~d------------PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 6 SGFTCPITKEEMKK------------PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SCCBCTTTCSBCSS------------EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred cEeECcCcCchhcC------------CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 47899999999998 78886 99999999999999872 248999 9866 54
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.70 E-value=7.7e-09 Score=87.41 Aligned_cols=50 Identities=24% Similarity=0.232 Sum_probs=43.5
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCC
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDS 225 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~ 225 (249)
+...|+||++.|.+ .+.++|||.|+..||..||..+..+||+||..+...
T Consensus 105 ~~f~CPI~~elm~D------------PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 105 DYLCGKISFELMRE------------PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp GGGBCTTTCSBCSS------------EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred HhhcccCccccCCC------------CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 47899999999998 888999999999999999987334799999988643
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1.4e-08 Score=72.50 Aligned_cols=45 Identities=24% Similarity=0.665 Sum_probs=38.5
Q ss_pred cCccccccccccccccCCCCCCCCccceEEeccCCc-cChhhHHHHHhhCCCCCccccccccC
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHL-YHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~-FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
.+...|.||++.+.. ++.+||+|+ |+..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~------------~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN------------WVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC------------CEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCC------------EEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 346799999998876 888999999 99999973 5689999998864
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=5.2e-09 Score=75.57 Aligned_cols=43 Identities=28% Similarity=0.646 Sum_probs=36.8
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCc-cChhhHHHHHhhCCCCCccccccccC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHL-YHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~-FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
...|+||++.+.. ++.+||+|. ||..|+.. ...||+||..+..
T Consensus 25 ~~~C~IC~~~~~~------------~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIA------------IVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCC------------BCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCC------------EEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 5699999999876 667999999 99999953 5689999998854
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.65 E-value=1.2e-08 Score=71.26 Aligned_cols=50 Identities=28% Similarity=0.666 Sum_probs=38.4
Q ss_pred cCccccccccccccccCCCCCCCCccceEEeccC--C---ccChhhHHHHHhh-CCCCCccccccccC
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCK--H---LYHSDCIVPWLRH-YSTTCPVCRYELKD 224 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~--H---~FH~~CI~~WL~~-~~~sCPvCR~~l~~ 224 (249)
++...|.||+++. ++. . .+||. + .||..||.+|+.. ++.+||+||+++..
T Consensus 4 ~~~~~CrIC~~~~--~~~---------l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNE---------R-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEEC--SCC---------C-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCC--CCc---------e-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 3467999999973 222 3 58854 5 9999999999986 36789999998753
No 65
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.57 E-value=1.6e-08 Score=93.14 Aligned_cols=59 Identities=27% Similarity=0.492 Sum_probs=41.5
Q ss_pred cCccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhC----------CCCCccccccccCC
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHY----------STTCPVCRYELKDS 225 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~----------~~sCPvCR~~l~~~ 225 (249)
+....|+||++.+..+... ++ ..-....|+|.||..||.+||+.- ..+||+||.++...
T Consensus 306 e~~~ECaICys~~l~~g~l---Pd-k~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEV---PL-VSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCC---CC-BCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCC---cc-ccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 4578999999999873320 00 000123599999999999999861 14699999988643
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.54 E-value=1.6e-08 Score=74.16 Aligned_cols=43 Identities=30% Similarity=0.644 Sum_probs=37.6
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCc-cChhhHHHHHhhCCCCCccccccccC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHL-YHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~-FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
...|.||++.+.. ++.+||||. |+..|+..| ..||+||..+..
T Consensus 18 ~~~C~IC~~~~~~------------~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEIN------------STFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCC------------EEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCc------------EEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence 5699999999876 888999999 999999876 379999998865
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.52 E-value=2.7e-08 Score=74.66 Aligned_cols=52 Identities=19% Similarity=0.591 Sum_probs=40.7
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhC-------CCCCcc--cccc--ccC
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHY-------STTCPV--CRYE--LKD 224 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~-------~~sCPv--CR~~--l~~ 224 (249)
+..+|+||++.+..... +...+|+|.||.+|+..++... .-+||. |+.. +..
T Consensus 4 ~~~~C~IC~~~~~~~~~---------~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQM---------TTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp SBCCCSSSCCCCBGGGE---------EEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCcCCcccCcccccccc---------eEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 36799999999886543 4444799999999999998751 237999 9988 554
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.49 E-value=5.4e-08 Score=68.11 Aligned_cols=48 Identities=10% Similarity=0.190 Sum_probs=42.4
Q ss_pred ccccccccccccccCCCCCCCCccceEEe-ccCCccChhhHHHHHhhCCCCCccccccccCC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMEL-PCKHLYHSDCIVPWLRHYSTTCPVCRYELKDS 225 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~L-pC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~ 225 (249)
...|+||++.+.+ .+.+ +|||+|...||.+||+. +.+||+++..|...
T Consensus 3 ~~~CpIs~~~m~d------------PV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRR------------PVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSS------------EEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGG
T ss_pred eEEecCCCCCCCC------------CEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChh
Confidence 4689999999997 6777 79999999999999998 88999999988654
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.36 E-value=1.2e-07 Score=84.34 Aligned_cols=51 Identities=24% Similarity=0.562 Sum_probs=42.2
Q ss_pred cCccccccccccccccCCCCCCCCccceEE-eccCCccChhhHHHHHhhC-CCCCcc--ccccccCC
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIME-LPCKHLYHSDCIVPWLRHY-STTCPV--CRYELKDS 225 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~-LpC~H~FH~~CI~~WL~~~-~~sCPv--CR~~l~~~ 225 (249)
..+..|+||++.|.. .++ +.|||.|++.||..|+..+ ..+||+ ||..+...
T Consensus 179 ~~el~CPIcl~~f~D------------PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 179 KIELTCPITCKPYEA------------PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp BCCSBCTTTSSBCSS------------EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred ceeeECcCccCcccC------------CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 347899999999988 555 4899999999999999872 357999 99987543
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.34 E-value=1.1e-07 Score=87.79 Aligned_cols=44 Identities=30% Similarity=0.774 Sum_probs=38.7
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCc-cChhhHHHHHhhCCCCCccccccccC
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHL-YHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~-FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
++..|+||++.+.. ++.+||||. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~------------~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS------------VVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC------------EEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc------------eEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 46799999999987 888999999 999999887 469999998853
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.24 E-value=6.5e-07 Score=68.60 Aligned_cols=47 Identities=26% Similarity=0.607 Sum_probs=39.5
Q ss_pred ccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccC
Q 041030 167 CCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 167 ~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
-|.+|--.+..- .+.+||+|+||.+|+..|.+.+.++||.|+.++..
T Consensus 3 fC~~C~~Pi~iy-----------gRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVY-----------GRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEE-----------EEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEE-----------eeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 477887777763 78889999999999999987757899999998853
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.43 E-value=9.8e-05 Score=64.68 Aligned_cols=51 Identities=20% Similarity=0.463 Sum_probs=40.2
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhC-CCCCccccccccCC
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHY-STTCPVCRYELKDS 225 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~-~~sCPvCR~~l~~~ 225 (249)
....|.||.+-+..|. +--.|+|.||..|+..|++.. +..||.|+...+..
T Consensus 179 ~i~~C~iC~~iv~~g~-----------~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ-----------SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCE-----------ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCc-----------ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 3678999999988752 233399999999999999872 34899999876544
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.07 E-value=0.031 Score=41.51 Aligned_cols=34 Identities=15% Similarity=0.379 Sum_probs=25.6
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHH
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPW 207 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~W 207 (249)
+..|+||++.+..... ..-+.|+|.|+..|+..|
T Consensus 3 e~~C~~C~~~~~~~av---------~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAV---------KTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCC---------EEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCce---------EECCcCChHHhHHHCHHH
Confidence 6799999987533221 233889999999999983
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.94 E-value=0.022 Score=42.98 Aligned_cols=49 Identities=27% Similarity=0.536 Sum_probs=40.4
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCCCC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDSII 227 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~~~ 227 (249)
-..|-.|+..+.. .+.- ..|+.|..|+...|+. ...||+|+++|++...
T Consensus 28 ~~nCKsCWf~~k~------------LV~C-~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 28 PQFCKSCWFENKG------------LVEC-NNHYLCLNCLTLLLSV-SNRCPICKMPLPTKLR 76 (99)
T ss_dssp CCCCCSSCSCCSS------------EEEC-SSCEEEHHHHHHTCSS-SSEETTTTEECCCCSC
T ss_pred cccChhhccccCC------------eeee-cchhhHHHHHHHHHhh-ccCCcccCCcCCccee
Confidence 5799999988774 3222 4799999999999999 9999999999987543
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=91.83 E-value=0.088 Score=36.91 Aligned_cols=48 Identities=19% Similarity=0.418 Sum_probs=33.9
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhC---CCCCccccccccC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHY---STTCPVCRYELKD 224 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~---~~sCPvCR~~l~~ 224 (249)
...|.||.+. +.. +.--.|...||..|+.+.|..- .-.||.|+.+..+
T Consensus 12 ~~~C~vC~~~---~~l---------l~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p 62 (66)
T 2lri_C 12 GARCGVCGDG---TDV---------LRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62 (66)
T ss_dssp TCCCTTTSCC---TTC---------EECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred CCCcCCCCCC---CeE---------EECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence 5689999753 222 4333499999999999888762 2379999765433
No 76
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=91.34 E-value=0.1 Score=40.34 Aligned_cols=31 Identities=13% Similarity=0.430 Sum_probs=24.6
Q ss_pred CeeeeccCCCeeEeccCCCCCc-cCCCCCccceee
Q 041030 22 HYFWCQSCQRTTRFRSTDPSEL-FCPHCSAQLYLE 55 (249)
Q Consensus 22 ~~yWCy~C~r~Vr~~~~~~s~~-~CP~C~~gFlEE 55 (249)
-.|||..|...+.+... .. .||.|++..++-
T Consensus 72 ~~~~C~~CG~~~e~~~~---~~~~CP~Cgs~~~~i 103 (119)
T 2kdx_A 72 VELECKDCSHVFKPNAL---DYGVCEKCHSKNVII 103 (119)
T ss_dssp CEEECSSSSCEECSCCS---TTCCCSSSSSCCCEE
T ss_pred ceEEcCCCCCEEeCCCC---CCCcCccccCCCcEE
Confidence 35999999999887433 46 899999997763
No 77
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=90.37 E-value=0.17 Score=41.03 Aligned_cols=35 Identities=20% Similarity=0.613 Sum_probs=27.2
Q ss_pred CCceeccccCeeeeccCCCeeEeccCCCCCccCCCCCcc
Q 041030 13 NGTRRTRTFHYFWCQSCQRTTRFRSTDPSELFCPHCSAQ 51 (249)
Q Consensus 13 ~~~~~~rt~~~yWCy~C~r~Vr~~~~~~s~~~CP~C~~g 51 (249)
.|.|+.|+|. |.|..|.+...... ...+||.|++.
T Consensus 123 ~~i~~~~~~~-y~C~~Cg~~~~~~~---~~~~Cp~CG~~ 157 (165)
T 2lcq_A 123 RGIKKVIKWR-YVCIGCGRKFSTLP---PGGVCPDCGSK 157 (165)
T ss_dssp CCCSSCCCCC-EEESSSCCEESSCC---GGGBCTTTCCB
T ss_pred hhccccccEE-EECCCCCCcccCCC---CCCcCCCCCCc
Confidence 4677777776 99999998876432 24699999998
No 78
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=84.40 E-value=0.59 Score=33.96 Aligned_cols=32 Identities=22% Similarity=0.771 Sum_probs=25.3
Q ss_pred CeeeeccCCCeeEeccCCCCCccCCCCCcccee
Q 041030 22 HYFWCQSCQRTTRFRSTDPSELFCPHCSAQLYL 54 (249)
Q Consensus 22 ~~yWCy~C~r~Vr~~~~~~s~~~CP~C~~gFlE 54 (249)
+.+||-.|...|..... ...+.||.|+..|==
T Consensus 24 ~~~wCP~C~~~~~~~~~-~~~v~C~~C~~~FC~ 55 (86)
T 2ct7_A 24 KFLWCAQCSFGFIYERE-QLEATCPQCHQTFCV 55 (86)
T ss_dssp CEECCSSSCCCEECCCS-CSCEECTTTCCEECS
T ss_pred CEeECcCCCchheecCC-CCceEeCCCCCcccc
Confidence 56899999998876543 446899999998874
No 79
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=84.29 E-value=0.68 Score=47.75 Aligned_cols=49 Identities=20% Similarity=0.146 Sum_probs=43.7
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccC-CccChhhHHHHHhhCCCCCccccccccCC
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCK-HLYHSDCIVPWLRHYSTTCPVCRYELKDS 225 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~-H~FH~~CI~~WL~~~~~sCPvCR~~l~~~ 225 (249)
+...|+|-++-+.+ .+++|-| +.|-..+|.+||.. +.+||+=|..|...
T Consensus 890 ~~F~cPIs~~lM~D------------PVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 890 DEFLDPLMYTIMKD------------PVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLE 939 (968)
T ss_dssp GGGBCTTTCSBCSS------------EEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGG
T ss_pred HHhCCcchhhHHhC------------CeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcc
Confidence 36889999999998 8899987 68999999999999 99999999988643
No 80
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=82.87 E-value=0.36 Score=32.98 Aligned_cols=52 Identities=19% Similarity=0.402 Sum_probs=33.9
Q ss_pred cCccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHh----hCCCCCccccccc
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLR----HYSTTCPVCRYEL 222 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~----~~~~sCPvCR~~l 222 (249)
++...|+||...+..+.. |+.--.|..-||..|+.--.. .....||.|+..-
T Consensus 4 ~e~~~C~~C~~~~~~~~~--------mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 4 GSSGQCGACGESYAADEF--------WICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp SSCCCCSSSCCCCCSSSC--------EEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCccCCCCC--------EEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 346789999987654332 233334999999999854322 1256799997643
No 81
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=82.72 E-value=0.83 Score=33.72 Aligned_cols=30 Identities=20% Similarity=0.776 Sum_probs=22.0
Q ss_pred ccccccccccccccCCCCCCCCccceEEec---cCCccChhhHHHH
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELP---CKHLYHSDCIVPW 207 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~Lp---C~H~FH~~CI~~W 207 (249)
+..|.||.. |..+. .+| |+-+||..|+.+-
T Consensus 15 D~~C~VC~~-~t~~~------------l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 15 DEMCDVCEV-WTAES------------LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp SCCCTTTCC-CCSSC------------CSSCSSSSSCCCHHHHHHH
T ss_pred CcccCcccc-ccccc------------eeccccccccccHhhcccc
Confidence 779999963 33322 245 8999999999885
No 82
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=80.16 E-value=2.3 Score=31.65 Aligned_cols=56 Identities=21% Similarity=0.344 Sum_probs=42.8
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDS 225 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~ 225 (249)
...|.||=+++...... +.+ |.-.-|+--.|+.|..-=.+.|+.+||.|+..+...
T Consensus 16 ~qiCqiCGD~VG~~~~G--e~F---VAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEG--DLF---VACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SCBCSSSCCBCCBCSSS--SBC---CSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CCccccccCccccCCCC--CEE---EeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 57999999998765431 111 444458888999999888888899999999998743
No 83
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=77.45 E-value=1.3 Score=35.12 Aligned_cols=33 Identities=21% Similarity=0.567 Sum_probs=23.9
Q ss_pred CeeeeccCCCeeEecc-----------CC-------CCCccCCCCCcccee
Q 041030 22 HYFWCQSCQRTTRFRS-----------TD-------PSELFCPHCSAQLYL 54 (249)
Q Consensus 22 ~~yWCy~C~r~Vr~~~-----------~~-------~s~~~CP~C~~gFlE 54 (249)
-.+||.+|...+.+.. .. .....||.|++.-++
T Consensus 69 ~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~ 119 (139)
T 3a43_A 69 AVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFE 119 (139)
T ss_dssp CEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEE
T ss_pred CcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccE
Confidence 3599999999988754 10 014679999998765
No 84
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=76.90 E-value=0.79 Score=31.23 Aligned_cols=46 Identities=26% Similarity=0.632 Sum_probs=31.2
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhh---CCCCCcccccc
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRH---YSTTCPVCRYE 221 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~---~~~sCPvCR~~ 221 (249)
.+..|.||.+. +.. +.--.|...||..|+.+=+.. +.-.||.|+.+
T Consensus 10 ~~~~C~vC~~~---g~l---------l~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEI---------ILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCC---SSE---------EECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCccCCCC---CcE---------EECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 36789999873 221 333349999999999875443 23469999653
No 85
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=74.82 E-value=1.8 Score=31.34 Aligned_cols=30 Identities=27% Similarity=0.678 Sum_probs=23.8
Q ss_pred eeeeccCCCeeEeccCCCCCccCCCCCccceeec
Q 041030 23 YFWCQSCQRTTRFRSTDPSELFCPHCSAQLYLEL 56 (249)
Q Consensus 23 ~yWCy~C~r~Vr~~~~~~s~~~CP~C~~gFlEEl 56 (249)
-+.||.|.....- .+-.|||.|+..=|..+
T Consensus 15 iLrC~aCf~~t~~----~~k~FCp~CGn~TL~Rv 44 (79)
T 2con_A 15 ILRCHGCFKTTSD----MNRVFCGHCGNKTLKKV 44 (79)
T ss_dssp EEECSSSCCEESC----SSCCSCSSSCCSCCEEE
T ss_pred eeEecccceECCC----cccccccccCcccceEE
Confidence 5799999988743 23489999999988765
No 86
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=74.53 E-value=0.53 Score=33.13 Aligned_cols=51 Identities=25% Similarity=0.487 Sum_probs=33.2
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhh---CCCCCcccccccc
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRH---YSTTCPVCRYELK 223 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~---~~~sCPvCR~~l~ 223 (249)
+...|.||..... +.. ++.--.|.-.||..|+..-+.. +.-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~-~~~--------mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSP--------MIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCC--------EEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCC--------EEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3567999987642 222 1322249999999999764432 1446999987664
No 87
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=74.27 E-value=1.1 Score=29.10 Aligned_cols=45 Identities=24% Similarity=0.542 Sum_probs=28.4
Q ss_pred ccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhh---CCCCCccccc
Q 041030 167 CCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRH---YSTTCPVCRY 220 (249)
Q Consensus 167 ~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~---~~~sCPvCR~ 220 (249)
.|.||...-..+.. +.--.|...||..|+.+=|.. +.-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~l---------l~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKL---------ILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCC---------EECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCE---------EECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58888875332222 333359999999999753433 1335888864
No 88
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=73.07 E-value=1 Score=34.00 Aligned_cols=47 Identities=21% Similarity=0.514 Sum_probs=30.9
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhh---CCCCCcccc
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRH---YSTTCPVCR 219 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~---~~~sCPvCR 219 (249)
.+..|.||.+.-+.... +.=-.|...||..|+...+.. +.-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~l---------l~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQ---------FFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTS---------EECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCC---------eECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 46799999886433222 433459999999999877642 133466553
No 89
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.84 E-value=0.45 Score=31.79 Aligned_cols=45 Identities=29% Similarity=0.696 Sum_probs=29.9
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhh---CCCCCccccc
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRH---YSTTCPVCRY 220 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~---~~~sCPvCR~ 220 (249)
.+..|.||.+. +.. +.--.|...||..|+.+=|.. +.-.||.|+.
T Consensus 8 ~~~~C~vC~~~---g~l---------l~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---GQL---------LMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---SCC---------EECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---CeE---------EEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 36789999974 222 433359999999999864443 1225887754
No 90
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=72.28 E-value=0.76 Score=31.43 Aligned_cols=52 Identities=23% Similarity=0.590 Sum_probs=33.8
Q ss_pred cCccccccccccccc-cCCCCCCCCccceEEe-ccCCccChhhHHHHHh------hCCCCCcccccccc
Q 041030 163 NEVQCCPICKEEFRV-RDDVDDDSDEVMIMEL-PCKHLYHSDCIVPWLR------HYSTTCPVCRYELK 223 (249)
Q Consensus 163 ~~~~~C~ICle~f~~-~~~~~~~~~~~~v~~L-pC~H~FH~~CI~~WL~------~~~~sCPvCR~~l~ 223 (249)
.++..|.||...... ... +..- .|.-.||..|+.+=|. .+.-.|+.|+....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~---------ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNE---------MVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBC---------EEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCC---------EEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 346799999986432 122 3333 4999999999886432 12457999976543
No 91
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=71.84 E-value=0.76 Score=31.30 Aligned_cols=47 Identities=26% Similarity=0.587 Sum_probs=31.3
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhh---CCCCCccccccc
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRH---YSTTCPVCRYEL 222 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~---~~~sCPvCR~~l 222 (249)
.+..|.||.+. +.. +.--.|...||..|+.+=|.. +.-.||.|+...
T Consensus 8 ~~~~C~vC~~~---g~l---------l~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG---GEL---------LCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC---SSC---------BCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC---CCE---------EEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 36789999863 222 333349999999999865443 133699997643
No 92
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=69.22 E-value=2.6 Score=29.28 Aligned_cols=32 Identities=13% Similarity=0.544 Sum_probs=27.1
Q ss_pred CeeeeccCCCeeEeccCCCCCccCCCCCccceee
Q 041030 22 HYFWCQSCQRTTRFRSTDPSELFCPHCSAQLYLE 55 (249)
Q Consensus 22 ~~yWCy~C~r~Vr~~~~~~s~~~CP~C~~gFlEE 55 (249)
-.|-|-.|...|.+... ..+-||.|+..+|.-
T Consensus 20 v~Y~C~~Cg~~~~l~~~--~~iRC~~CG~RILyK 51 (63)
T 3h0g_L 20 MIYLCADCGARNTIQAK--EVIRCRECGHRVMYK 51 (63)
T ss_dssp CCCBCSSSCCBCCCCSS--SCCCCSSSCCCCCBC
T ss_pred eEEECCCCCCeeecCCC--CceECCCCCcEEEEE
Confidence 45999999999998754 359999999999975
No 93
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=68.96 E-value=1.4 Score=36.08 Aligned_cols=47 Identities=26% Similarity=0.563 Sum_probs=32.5
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhh---CCCCCcccccccc
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRH---YSTTCPVCRYELK 223 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~---~~~sCPvCR~~l~ 223 (249)
+..|.||.+. |+. +.--.|...||..|+.+-|.. |.-.||.|+..-.
T Consensus 4 ~~~C~~C~~~---g~l---------l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 4 EDWCAVCQNG---GEL---------LCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CSSCTTTCCC---SSC---------EECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCccccCCCC---Cee---------eecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 5679999854 222 333349999999999876654 1346999987543
No 94
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=65.74 E-value=4.4 Score=32.41 Aligned_cols=44 Identities=23% Similarity=0.423 Sum_probs=31.2
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHh----------hCCCCCccccc
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLR----------HYSTTCPVCRY 220 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~----------~~~~sCPvCR~ 220 (249)
+..|.||.+.-+. +---.|-..||..||.+=|. .+.-.||+|+.
T Consensus 63 ~d~C~vC~~GG~L------------lcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGNL------------ICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSSE------------EECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCCcE------------EeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 6799999975332 22224999999999997653 22447999974
No 95
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=65.40 E-value=4.5 Score=37.21 Aligned_cols=49 Identities=20% Similarity=0.464 Sum_probs=33.5
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCc--cChhhHHHHHhh-CCCCCccccccccC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHL--YHSDCIVPWLRH-YSTTCPVCRYELKD 224 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~--FH~~CI~~WL~~-~~~sCPvCR~~l~~ 224 (249)
...|+|-+..+... ++-..|.|+ |-..=+...... +.-.||+|.+.+..
T Consensus 215 SL~CPlS~~ri~~P-----------~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 215 SLMCPLGKMRLTIP-----------CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp ESBCTTTCSBCSSE-----------EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeeCCCccceeccC-----------CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 46899999888774 677779999 544333333332 13479999988754
No 96
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=65.16 E-value=5.9 Score=29.89 Aligned_cols=53 Identities=17% Similarity=0.403 Sum_probs=30.5
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHH------HHhhCCCCCcccc
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVP------WLRHYSTTCPVCR 219 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~------WL~~~~~sCPvCR 219 (249)
+...|.+|+..=..... ...+.++.-..|+..||..|+.. .+..+.-.||-|+
T Consensus 4 p~~~C~~C~~~~~~~~~---g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNRE---KKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTT---SCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcC---CCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 35689999875321100 01123355556999999999952 2333344577664
No 97
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=64.09 E-value=4.4 Score=37.43 Aligned_cols=49 Identities=27% Similarity=0.528 Sum_probs=33.5
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhh----CCCCCccccccccCC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRH----YSTTCPVCRYELKDS 225 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~----~~~sCPvCR~~l~~~ 225 (249)
...|+|-+..+... ++-..|.|+-|.+- ..||.. +.-.||+|...+...
T Consensus 249 SL~CPlS~~ri~~P-----------vRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 249 SLQCPISYTRMKYP-----------SKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp ESBCTTTSSBCSSE-----------EEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred eecCCCcccccccc-----------CcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccCHH
Confidence 47899999888774 67778999955442 333333 134799998877443
No 98
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=63.13 E-value=4.6 Score=29.73 Aligned_cols=47 Identities=26% Similarity=0.627 Sum_probs=32.5
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhh---CCCCCccccccc
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRH---YSTTCPVCRYEL 222 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~---~~~sCPvCR~~l 222 (249)
.+..|.||.+. +.. +.--.|.-.||..|+.+=|.. +.-.||.|+..-
T Consensus 24 n~~~C~vC~~~---g~L---------L~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 24 SATICRVCQKP---GDL---------VMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSCCSSSCSS---SCC---------EECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCcCcCcCCC---CCE---------EECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 36789999974 222 333349999999999775544 133699997653
No 99
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=62.89 E-value=1.7 Score=32.35 Aligned_cols=47 Identities=26% Similarity=0.355 Sum_probs=29.7
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhh--CCCCCccccc
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRH--YSTTCPVCRY 220 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~--~~~sCPvCR~ 220 (249)
+...| ||-.....+.. +.--.|.-.||..|+..=+.. ..-.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~m---------i~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYM---------ICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCE---------EEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcE---------EEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34667 89776544322 333349999999998653222 0347999974
No 100
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=61.98 E-value=1.7 Score=36.39 Aligned_cols=48 Identities=27% Similarity=0.531 Sum_probs=32.2
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhh---CCCCCcccccccc
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRH---YSTTCPVCRYELK 223 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~---~~~sCPvCR~~l~ 223 (249)
.+..|.||.+. |.. +.--.|...||..|+.+.|.. |.-.||.|+..-.
T Consensus 6 ~~~~C~~C~~~---g~l---------l~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNG---GDL---------LCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCC---EEE---------EECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCC---Cce---------EEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 35689999753 111 222249999999999876654 1347999986543
No 101
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=61.81 E-value=1.3 Score=29.90 Aligned_cols=46 Identities=28% Similarity=0.710 Sum_probs=31.4
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhh---CCCCCccccccc
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRH---YSTTCPVCRYEL 222 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~---~~~sCPvCR~~l 222 (249)
+..|.||... +.. +.--.|...||..|+.+=|.. +.-.||.|+...
T Consensus 5 ~~~C~vC~~~---g~l---------l~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 5 EDFCSVCRKS---GQL---------LMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CSSCTTTCCC---SSC---------EECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCcCCCCC---CcE---------EEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 6789999874 222 433359999999999864443 133599996654
No 102
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.39 E-value=5.1 Score=28.35 Aligned_cols=49 Identities=22% Similarity=0.485 Sum_probs=30.7
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHh----hCCCCCccccccc
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLR----HYSTTCPVCRYEL 222 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~----~~~~sCPvCR~~l 222 (249)
...| ||......+.. |+.--.|..-||..|+.--.. .....||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~--------MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHF--------MIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSC--------EEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCc--------eEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 4566 89887643222 233334999999999842111 1256799998755
No 103
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=61.31 E-value=1.9 Score=29.62 Aligned_cols=46 Identities=24% Similarity=0.554 Sum_probs=31.3
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhh---CCCCCcccccc
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRH---YSTTCPVCRYE 221 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~---~~~sCPvCR~~ 221 (249)
.+..|.||.+. +.. +.--.|...||..|+.+=|.. +.-.||.|...
T Consensus 7 ~~~~C~vC~~~---g~l---------l~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---GEL---------ICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---SSC---------EECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---CCE---------EEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 36799999974 222 333359999999999864443 13359999653
No 104
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=61.28 E-value=5.4 Score=28.10 Aligned_cols=41 Identities=15% Similarity=0.454 Sum_probs=26.6
Q ss_pred CCceeccccCeeeeccCCCeeEeccCCCCCccCCCCCccceee
Q 041030 13 NGTRRTRTFHYFWCQSCQRTTRFRSTDPSELFCPHCSAQLYLE 55 (249)
Q Consensus 13 ~~~~~~rt~~~yWCy~C~r~Vr~~~~~~s~~~CP~C~~gFlEE 55 (249)
.|+.-.-.--.|=|-.|...+.+... ..+.||.|+...|--
T Consensus 18 ~g~~~~~~~v~Y~C~~CG~~~e~~~~--d~irCp~CG~RILyK 58 (70)
T 1twf_L 18 GTSQARTATLKYICAECSSKLSLSRT--DAVRCKDCGHRILLK 58 (70)
T ss_dssp -------CCCCEECSSSCCEECCCTT--STTCCSSSCCCCCBC
T ss_pred ccccCCCceEEEECCCCCCcceeCCC--CCccCCCCCceEeEe
Confidence 34433233466999999999888643 347899999977754
No 105
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=59.69 E-value=9.4 Score=27.68 Aligned_cols=39 Identities=23% Similarity=0.533 Sum_probs=27.6
Q ss_pred CCceeccccCeeeeccCCCeeEecc--------------CCCCCccCCCCCcc
Q 041030 13 NGTRRTRTFHYFWCQSCQRTTRFRS--------------TDPSELFCPHCSAQ 51 (249)
Q Consensus 13 ~~~~~~rt~~~yWCy~C~r~Vr~~~--------------~~~s~~~CP~C~~g 51 (249)
-|++||.....|-|-.|.=..--.. ..+.+-+||.|+.+
T Consensus 17 ~g~~~~~em~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 17 QGPGSMNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp CCCCCSSCCCEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred cCCcCCCCcceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 4667888888999999996554321 11445699999974
No 106
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=59.37 E-value=5.8 Score=27.30 Aligned_cols=34 Identities=29% Similarity=0.635 Sum_probs=23.6
Q ss_pred cCccccccccccccccCCCCCCCCccceEEe-ccCCccChhhH
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMEL-PCKHLYHSDCI 204 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~L-pC~H~FH~~CI 204 (249)
++...|.+|...+..+.. ++.-- .|.-.||..|+
T Consensus 6 ~~~~~C~~C~~p~~~~~~--------mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQD--------AILCEASCQKWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSC--------EEEBTTTTCCEEEHHHH
T ss_pred CCcCcCccCCCccCCCCC--------eEecccCccccCchhcc
Confidence 446799999998766543 13333 59999999997
No 107
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.90 E-value=1.8 Score=31.89 Aligned_cols=50 Identities=22% Similarity=0.420 Sum_probs=32.6
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhh---CCCCCccccccc
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRH---YSTTCPVCRYEL 222 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~---~~~sCPvCR~~l 222 (249)
++..|.||...-..... +.--.|...||..|+.+=|.. +.-.||.|+...
T Consensus 15 ~~~~C~vC~~~~~~~~l---------l~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKL---------LFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCCCSSSCCSGGGGGC---------EECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHH
T ss_pred CCCCCccCCCcCCCCCE---------EEcCCCCchhccccCCCCcccCCCCCcCCccCcCcc
Confidence 35689999986432222 333359999999999753333 133599997654
No 108
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=57.47 E-value=2.9 Score=31.65 Aligned_cols=47 Identities=26% Similarity=0.614 Sum_probs=28.6
Q ss_pred cccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhh---CCCCCccccc
Q 041030 166 QCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRH---YSTTCPVCRY 220 (249)
Q Consensus 166 ~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~---~~~sCPvCR~ 220 (249)
..|.||.+.-..... ++.--.|...||..|+.+-|.. +.=.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~--------ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADN--------MLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCC--------CEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccc--------eEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 467788764222122 1333349999999999765544 1236888874
No 109
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.14 E-value=5.6 Score=29.41 Aligned_cols=47 Identities=26% Similarity=0.468 Sum_probs=28.8
Q ss_pred CccccccccccccccCCCCCCCCccceEEec--cC-CccChhhHHHHHhh---CCCCCcccccccc
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELP--CK-HLYHSDCIVPWLRH---YSTTCPVCRYELK 223 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~Lp--C~-H~FH~~CI~~WL~~---~~~sCPvCR~~l~ 223 (249)
+...| ||..... +.. +.-=. |. ..||..|+. |.. ++-.||.|+....
T Consensus 35 e~~yC-iC~~~~~-g~M---------I~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEM---------IGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCBCS-TTCCBCC-SCC---------CCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCcEE-ECCCCCC-CCE---------eEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 35677 9988643 222 22223 55 689999986 333 1447999976543
No 110
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=56.05 E-value=2.8 Score=25.53 Aligned_cols=15 Identities=27% Similarity=0.550 Sum_probs=12.3
Q ss_pred Ccccccccccccccc
Q 041030 164 EVQCCPICKEEFRVR 178 (249)
Q Consensus 164 ~~~~C~ICle~f~~~ 178 (249)
+.+.|+||+.+|...
T Consensus 4 EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 4 EGFICPQCMKSLGSA 18 (34)
T ss_dssp EEEECTTTCCEESSH
T ss_pred cccCCcHHHHHcCCH
Confidence 468999999998753
No 111
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=56.02 E-value=5.7 Score=25.99 Aligned_cols=34 Identities=18% Similarity=0.469 Sum_probs=24.3
Q ss_pred eeeeccCCCeeEeccCC-CCCccCCCCCccceeec
Q 041030 23 YFWCQSCQRTTRFRSTD-PSELFCPHCSAQLYLEL 56 (249)
Q Consensus 23 ~yWCy~C~r~Vr~~~~~-~s~~~CP~C~~gFlEEl 56 (249)
-|=|-.|.+++....-. ...+-||+|+=..+.-+
T Consensus 3 iY~C~rCg~~fs~~el~~lP~IrCpyCGyrii~Kv 37 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMV 37 (48)
T ss_dssp --CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEECC
T ss_pred EEEeeccCCCccHHHHhhCCCcccCccCcEEEEEe
Confidence 48899999998765421 34689999998877654
No 112
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=55.95 E-value=6.7 Score=29.57 Aligned_cols=10 Identities=30% Similarity=0.797 Sum_probs=4.6
Q ss_pred eeccCCCeeE
Q 041030 25 WCQSCQRTTR 34 (249)
Q Consensus 25 WCy~C~r~Vr 34 (249)
-|-.|+..+.
T Consensus 34 ~CP~Cq~eL~ 43 (101)
T 2jne_A 34 HCPQCQHVLD 43 (101)
T ss_dssp BCSSSCSBEE
T ss_pred cCccCCCcce
Confidence 4445554433
No 113
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=52.93 E-value=3.4 Score=33.36 Aligned_cols=50 Identities=24% Similarity=0.404 Sum_probs=31.3
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHh----hCCCCCccccccc
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLR----HYSTTCPVCRYEL 222 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~----~~~~sCPvCR~~l 222 (249)
+...| ||......+.. ++.--.|...||..|+.--.. .+.-.||.|+..-
T Consensus 7 ~~~~C-~C~~~~~~~~~--------mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKF--------YIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp CCEET-TTTEECCTTSC--------EEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCcEe-eCCCCCCCCCC--------EeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 46788 99887543322 132234999999999842111 1255799997643
No 114
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=52.56 E-value=10 Score=29.84 Aligned_cols=44 Identities=23% Similarity=0.429 Sum_probs=29.2
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHH------h----hCCCCCccccc
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWL------R----HYSTTCPVCRY 220 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL------~----~~~~sCPvCR~ 220 (249)
+..|.||.+.-+. +---.|-..||.+||.+-+ + .+.=.|++|+-
T Consensus 57 ~~~C~vC~dGG~L------------lcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 57 DEQCRWCAEGGNL------------ICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp BSSCTTTCCCSEE------------EECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCcCeecCCCCee------------EecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 5679999875221 2222389999999999752 1 11347999954
No 115
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=51.88 E-value=2.4 Score=30.95 Aligned_cols=56 Identities=16% Similarity=0.241 Sum_probs=33.9
Q ss_pred Ccccccccccccc-ccCCCCCCCCccceEEeccCCccChhhHHHHHhh-CCCCCccccccccCCCC
Q 041030 164 EVQCCPICKEEFR-VRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRH-YSTTCPVCRYELKDSII 227 (249)
Q Consensus 164 ~~~~C~ICle~f~-~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~-~~~sCPvCR~~l~~~~~ 227 (249)
++..|.||.+.-. ..+. ++.--.|.-.||..|+.+-+.- +.-.||.|........+
T Consensus 24 ~~~~C~vC~~~~s~~~~~--------ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~~ 81 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNV--------ILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPAL 81 (88)
T ss_dssp CCCCCSSCCSSSSCSEEE--------EEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC-
T ss_pred CCCcCCcCCCCCCCCCCC--------EEECCCCCchhhcccCCCCccCCCceECccccCccchhhh
Confidence 4679999987531 1111 1222248999999999753211 24469999776655443
No 116
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=51.06 E-value=3.8 Score=28.73 Aligned_cols=48 Identities=29% Similarity=0.580 Sum_probs=30.3
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHH------H---hhCCCCCcccccccc
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPW------L---RHYSTTCPVCRYELK 223 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~W------L---~~~~~sCPvCR~~l~ 223 (249)
...| ||......+ . |+.--.|..-||..|+.-- | .. ...||.|+..-.
T Consensus 16 ~~~C-~C~~~~~~~-~--------MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~-~~~C~~C~~~~~ 72 (76)
T 1wem_A 16 ALYC-ICRQPHNNR-F--------MICCDRCEEWFHGDCVGISEARGRLLERNGE-DYICPNCTILSG 72 (76)
T ss_dssp CCCS-TTCCCCCSS-C--------EEECSSSCCEEEHHHHSCCHHHHHHHHHHTC-CCCCHHHHHHSC
T ss_pred CCEE-ECCCccCCC-C--------EEEeCCCCCcEeCeEEccchhhhhhccCCCC-eEECcCCcCccC
Confidence 3566 898765422 1 2333349999999998421 1 23 678999976543
No 117
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=50.92 E-value=4.4 Score=33.66 Aligned_cols=53 Identities=25% Similarity=0.446 Sum_probs=33.8
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHH------HHh-----hCCCCCcccccccc
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVP------WLR-----HYSTTCPVCRYELK 223 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~------WL~-----~~~~sCPvCR~~l~ 223 (249)
+..|+||...+..++. ...++.--.|...||..|+.- -+. . .-.||.|+..-+
T Consensus 2 G~~CpiC~k~Y~~~~~-----~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~-~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDY-----ESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESV-AYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCT-----TCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHH-CCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCccc-----CCCeEECCCCCcccchhccccCHHHHHHhhcCCCCC-eeECcCCCCCCC
Confidence 4579999988776541 011233334999999999832 111 1 468999987543
No 118
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=50.57 E-value=8.6 Score=28.86 Aligned_cols=50 Identities=22% Similarity=0.470 Sum_probs=33.3
Q ss_pred ccccccccccccccCCCCCCCCccceEEe--ccCCccChhhHHHH------H---hhCCCCCcccccccc
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMEL--PCKHLYHSDCIVPW------L---RHYSTTCPVCRYELK 223 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~L--pC~H~FH~~CI~~W------L---~~~~~sCPvCR~~l~ 223 (249)
...|.||...+..... .+.- .|...||..|+.-= | ....-.||.|+....
T Consensus 3 ~~~C~iC~~p~~~~~~---------mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQD---------AILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSC---------EEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCC---------EEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 5689999998765433 3333 48999999998421 1 001557999987654
No 119
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=50.47 E-value=2.1 Score=30.64 Aligned_cols=28 Identities=32% Similarity=0.736 Sum_probs=19.4
Q ss_pred ccCCccChhhHHHHHhhC---C-CCCcccccc
Q 041030 194 PCKHLYHSDCIVPWLRHY---S-TTCPVCRYE 221 (249)
Q Consensus 194 pC~H~FH~~CI~~WL~~~---~-~sCPvCR~~ 221 (249)
.|...||..|+.+-|..- . =.||.|+.+
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 489999999998755541 2 368888753
No 120
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=50.16 E-value=10 Score=27.01 Aligned_cols=35 Identities=23% Similarity=0.554 Sum_probs=24.6
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHH
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVP 206 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~ 206 (249)
+...|.+|...|..-..+ -.--.||.+|+..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~Rr--------HHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRK--------HHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCC--------EECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCcccc--------ccCCCCCCEEChHHhCC
Confidence 356899999999864321 11223999999999643
No 121
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=50.06 E-value=4.1 Score=28.57 Aligned_cols=34 Identities=21% Similarity=0.614 Sum_probs=23.7
Q ss_pred ccCeeeeccCCCeeEeccCC-CCCccCCCCCccce
Q 041030 20 TFHYFWCQSCQRTTRFRSTD-PSELFCPHCSAQLY 53 (249)
Q Consensus 20 t~~~yWCy~C~r~Vr~~~~~-~s~~~CP~C~~gFl 53 (249)
+...-||..|+..-.++-.. ..|++|.+|...+=
T Consensus 5 ~ee~pWC~ICneDAtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 5 SSGLPWCCICNEDATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCCSSCTTTCSCCCEEETTTTSEEECSSHHHHHT
T ss_pred CcCCCeeEEeCCCCeEEecCCCCceehHHHHHHHc
Confidence 34567999999875554322 34799999977665
No 122
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=49.85 E-value=6.7 Score=26.83 Aligned_cols=13 Identities=15% Similarity=0.432 Sum_probs=6.6
Q ss_pred ccccccccccccc
Q 041030 165 VQCCPICKEEFRV 177 (249)
Q Consensus 165 ~~~C~ICle~f~~ 177 (249)
-+.|.+|...+..
T Consensus 27 CF~C~~C~~~L~~ 39 (76)
T 1iml_A 27 CLKCEKCGKTLTS 39 (76)
T ss_dssp TCBCTTTCCBCCT
T ss_pred CCCccccCccCCC
Confidence 3555555555444
No 123
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=48.56 E-value=12 Score=27.19 Aligned_cols=35 Identities=14% Similarity=0.298 Sum_probs=25.0
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHH
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPW 207 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~W 207 (249)
...|.+|...|..-..+ ..--.||++||..|...+
T Consensus 20 ~~~C~~C~~~F~~~~Rr--------hhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRR--------HHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCC--------EECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccchhhC--------ccccCCCCEECCcccCCe
Confidence 56899999999864331 222249999999997544
No 124
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=48.21 E-value=6.6 Score=29.74 Aligned_cols=51 Identities=20% Similarity=0.438 Sum_probs=28.4
Q ss_pred cccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHH------hhCCCCCccc
Q 041030 166 QCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWL------RHYSTTCPVC 218 (249)
Q Consensus 166 ~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL------~~~~~sCPvC 218 (249)
..|.||+..-..... .+ ..+.++.-..|...||..|+..++ ..+.-.||.|
T Consensus 2 ~~C~~C~~~~~~n~k-~g-~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C 58 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKK-SG-RPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC 58 (114)
T ss_dssp CCCSSSCCBTTBCTT-TC-CCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG
T ss_pred CcCccCCCCcccccc-CC-CCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc
Confidence 369999875421100 00 012234445599999999987542 2224456665
No 125
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=47.30 E-value=2.9 Score=29.10 Aligned_cols=49 Identities=18% Similarity=0.139 Sum_probs=30.9
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHH----hhCCCCCccccccc
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWL----RHYSTTCPVCRYEL 222 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL----~~~~~sCPvCR~~l 222 (249)
+...| ||......+.. |+.--.|..-||..|+.--. .. ...||.|+...
T Consensus 15 ~~~~C-~C~~~~~~g~~--------mI~Cd~C~~W~H~~Cvg~~~~~~~~~-~~~C~~C~~~~ 67 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGER--------MLACDGCGVWHHTRCIGINNADALPS-KFLCFRCIELS 67 (72)
T ss_dssp SEECC-TTCCCSCCSSC--------EEECSSSCEEEETTTTTCCTTSCCCS-CCCCHHHHHHC
T ss_pred cceEe-eCCCccCCCCc--------EEECCCCCCccCCeeeccCccccCCC-cEECCCccCCC
Confidence 35678 79876544432 23333499999999985321 12 55799997654
No 126
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=47.01 E-value=14 Score=26.42 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=24.9
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHH
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVP 206 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~ 206 (249)
+...|.+|...|..-..+ -.--.||.+|+..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~Rr--------HHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRR--------HHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCC--------EECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhc--------ccccCCCcEEChHHhCC
Confidence 467999999999874331 11223999999999644
No 127
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=46.96 E-value=2.8 Score=30.60 Aligned_cols=52 Identities=25% Similarity=0.615 Sum_probs=34.7
Q ss_pred ccccccccccccc-cCCCCCCCCccceEEe-ccCCccChhhHHHHHh-------hCCCCCccccccccCC
Q 041030 165 VQCCPICKEEFRV-RDDVDDDSDEVMIMEL-PCKHLYHSDCIVPWLR-------HYSTTCPVCRYELKDS 225 (249)
Q Consensus 165 ~~~C~ICle~f~~-~~~~~~~~~~~~v~~L-pC~H~FH~~CI~~WL~-------~~~~sCPvCR~~l~~~ 225 (249)
+..|.||...-.. ... +..- .|...||..|+.+=|. .+.-.|+.|+......
T Consensus 16 ~~~C~vC~~~~~~~~~~---------ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~ 76 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQ---------LVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76 (88)
T ss_dssp CCSCSSSCCCCCCTTCC---------EEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCS
T ss_pred CCcCCCCCCCCCCCCCc---------eEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhh
Confidence 5689999975322 122 3333 3999999999987554 1245799997766543
No 128
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.25 E-value=13 Score=25.95 Aligned_cols=39 Identities=28% Similarity=0.706 Sum_probs=30.1
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCcccccccc
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELK 223 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~ 223 (249)
...|+-|-+.+..++. +..+ +..||.+|. .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~---------v~a~--~~~wH~~CF---------~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQS---------LLAL--DKQWHVSCF---------KCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCC---------EEET--TEEECTTTC---------BCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeE---------EEEC--CcccccccC---------CcCcCCCCcC
Confidence 5689999999887655 5444 789998873 5889988775
No 129
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=46.25 E-value=16 Score=25.45 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=32.1
Q ss_pred cccCccccccccccc-cccCCCCCCCCccceEEe-ccCCccChhhHHHHHh-hCCCCCcccccc
Q 041030 161 RSNEVQCCPICKEEF-RVRDDVDDDSDEVMIMEL-PCKHLYHSDCIVPWLR-HYSTTCPVCRYE 221 (249)
Q Consensus 161 ~~~~~~~C~ICle~f-~~~~~~~~~~~~~~v~~L-pC~H~FH~~CI~~WL~-~~~~sCPvCR~~ 221 (249)
....+..|.||.+.- ...+. +..- .|.-.||..|+.+-+. .|.-.||.|+..
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~---------ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNV---------ILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSC---------EEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCC---------EEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 344578999998753 22222 3333 4999999999865321 123468888653
No 130
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=45.85 E-value=13 Score=28.69 Aligned_cols=33 Identities=27% Similarity=0.612 Sum_probs=23.9
Q ss_pred CccccccccccccccCCCCCCCCccceEEe-ccCCccChhhHH
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMEL-PCKHLYHSDCIV 205 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~L-pC~H~FH~~CI~ 205 (249)
+...|.+|...|..-.. -..- .||++||..|..
T Consensus 68 ~~~~C~~C~~~Fs~~~R---------rHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVR---------RHHCRQCGNIFCAECSA 101 (125)
T ss_dssp GCCBCTTTCCBCCSSSC---------CEECTTTCCEECGGGSC
T ss_pred CCCCCcCcCCccccccc---------cccCCCCCeEEChHHhC
Confidence 35689999999986432 1222 399999999953
No 131
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=45.82 E-value=15 Score=25.44 Aligned_cols=32 Identities=16% Similarity=0.471 Sum_probs=23.1
Q ss_pred ccccccccccccccCCCCCCCCccceEEe-ccCCccChhhHH
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMEL-PCKHLYHSDCIV 205 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~L-pC~H~FH~~CI~ 205 (249)
+..|.+|...|..-.. -..- .||.+|+..|..
T Consensus 11 ~~~C~~C~~~F~~~~R---------rHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNR---------KHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBC---------CEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccc---------cccCCCCCEEEcccccC
Confidence 4589999999986432 1222 399999999953
No 132
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.58 E-value=9.6 Score=25.99 Aligned_cols=40 Identities=20% Similarity=0.553 Sum_probs=30.1
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
...|+.|-+.+..++. +. .-+..||.+|. .|-.|+..|..
T Consensus 9 ~~~C~~C~~~I~~~~~---------v~--a~~~~~H~~CF---------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEK---------VS--SLGKDWHKFCL---------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTE---------EE--ETTEEEETTTC---------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeE---------EE--ECCeEeeCCCC---------CCCCCCCccCC
Confidence 4689999999886554 43 35789998773 58899888864
No 133
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=45.34 E-value=3.5 Score=30.95 Aligned_cols=48 Identities=25% Similarity=0.565 Sum_probs=29.6
Q ss_pred ccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhh---CCCCCcccccccc
Q 041030 167 CCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRH---YSTTCPVCRYELK 223 (249)
Q Consensus 167 ~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~---~~~sCPvCR~~l~ 223 (249)
.|.||...-... . ++.--.|...||..|+.+=|.. +.-.||.|+.-..
T Consensus 56 ~C~~C~~~~~~~-~--------ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~~ 106 (111)
T 2ysm_A 56 VCQNCKQSGEDS-K--------MLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICIS 106 (111)
T ss_dssp CCTTTCCCSCCT-T--------EEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCSC
T ss_pred cccccCccCCCC-C--------eeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcCC
Confidence 677887653321 1 1333349999999999764443 1346998866543
No 134
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=44.58 E-value=7.9 Score=25.15 Aligned_cols=44 Identities=16% Similarity=0.359 Sum_probs=27.5
Q ss_pred ccccccccccccCCCCCCCCccceEEe-ccCCccChhhHHHHH----hhCCCCCcccc
Q 041030 167 CCPICKEEFRVRDDVDDDSDEVMIMEL-PCKHLYHSDCIVPWL----RHYSTTCPVCR 219 (249)
Q Consensus 167 ~C~ICle~f~~~~~~~~~~~~~~v~~L-pC~H~FH~~CI~~WL----~~~~~sCPvCR 219 (249)
.|.||......+.. ++.-- .|..-||..|+.--. .. +..||.|+
T Consensus 4 ~cc~C~~p~~~~~~--------mI~Cd~~C~~WfH~~Cvgl~~~~~~~~-~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVD--------WVQCDGGCDEWFHQVCVGVSPEMAENE-DYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCC--------EEECTTTTCCEEETTTTTCCHHHHHHS-CCCCSCC-
T ss_pred cCCCCcCccCCCCc--------EEEeCCCCCccCcccccCCCccccCCC-CEECCCCC
Confidence 57788877654332 23333 488899999974211 23 67898885
No 135
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=44.32 E-value=13 Score=29.33 Aligned_cols=35 Identities=23% Similarity=0.494 Sum_probs=24.5
Q ss_pred cCcccccccccccc-ccCCCCCCCCccceEEeccCCccChhhHH
Q 041030 163 NEVQCCPICKEEFR-VRDDVDDDSDEVMIMELPCKHLYHSDCIV 205 (249)
Q Consensus 163 ~~~~~C~ICle~f~-~~~~~~~~~~~~~v~~LpC~H~FH~~CI~ 205 (249)
.....|.+|...|. .+.. ...-..|+|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~--------g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSA--------SVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCC--------EEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCC--------CCCCCCCCcccccccCC
Confidence 34789999999994 3333 03333499999999854
No 136
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=44.16 E-value=10 Score=26.41 Aligned_cols=46 Identities=26% Similarity=0.486 Sum_probs=27.9
Q ss_pred CccccccccccccccCCCCCCCCccceEEec--cC-CccChhhHHHHHhh---CCCCCccccccc
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELP--CK-HLYHSDCIVPWLRH---YSTTCPVCRYEL 222 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~Lp--C~-H~FH~~CI~~WL~~---~~~sCPvCR~~l 222 (249)
+...| ||..... +.. +.-=. |. ..||..|+. |.. ++-.||.|+...
T Consensus 15 ~~~~C-~C~~~~~-g~M---------I~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEM---------IGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSE---------ECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCE---------eEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 45677 8987532 221 22223 55 689999996 443 244699997654
No 137
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=44.05 E-value=14 Score=26.70 Aligned_cols=24 Identities=25% Similarity=0.833 Sum_probs=18.3
Q ss_pred eeeeccCCCeeEeccCCCCCccCCCCCccc
Q 041030 23 YFWCQSCQRTTRFRSTDPSELFCPHCSAQL 52 (249)
Q Consensus 23 ~yWCy~C~r~Vr~~~~~~s~~~CP~C~~gF 52 (249)
.|.|-.|+..+... .+||.|+...
T Consensus 18 ~~~C~~C~~~~~~~------afCPeCgq~L 41 (81)
T 2jrp_A 18 TAHCETCAKDFSLQ------ALCPDCRQPL 41 (81)
T ss_dssp EEECTTTCCEEEEE------EECSSSCSCC
T ss_pred ceECccccccCCCc------ccCcchhhHH
Confidence 56699999877653 4899998765
No 138
>2b9d_A E7 protein; zinc finger, homodimer, transcription, viral protein; 1.60A {Human papillomavirus type 1A} SCOP: g.91.1.1
Probab=43.78 E-value=11 Score=25.00 Aligned_cols=26 Identities=23% Similarity=0.714 Sum_probs=19.7
Q ss_pred eeccCCCeeEeccCC--------------CCCccCCCCCc
Q 041030 25 WCQSCQRTTRFRSTD--------------PSELFCPHCSA 50 (249)
Q Consensus 25 WCy~C~r~Vr~~~~~--------------~s~~~CP~C~~ 50 (249)
.|+.|++.||+.-.. +-+++||.|..
T Consensus 10 ~C~~C~~~lrl~V~at~~~IR~lqqLLl~~L~lvCp~Ca~ 49 (52)
T 2b9d_A 10 SCAYCEKLVRLTVLADHSAIRQLEEMLLRSLNIVCPLCTL 49 (52)
T ss_dssp ECTTTCCEEEEEEEECHHHHHHHHHHHHHTCCCCCTTTTT
T ss_pred ECCCCCCeEEEEEEeCchhHHHHHHHhhCCceEECcchhc
Confidence 599999999986321 34689999974
No 139
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=43.60 E-value=14 Score=21.45 Aligned_cols=28 Identities=14% Similarity=0.401 Sum_probs=21.7
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhh
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDC 203 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~C 203 (249)
...|+.|-..+...+. + +.=+..||+.|
T Consensus 3 ~~~C~~C~k~Vy~~Ek---------~--~~~g~~~Hk~C 30 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEK---------V--NCLDKFWHKAC 30 (31)
T ss_dssp CCBCSSSCSBCCGGGC---------C--CSSSSCCCGGG
T ss_pred CCcCCccCCEEeccee---------E--EECCeEecccC
Confidence 3489999999888755 3 33589999988
No 140
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=43.23 E-value=11 Score=25.73 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=17.5
Q ss_pred CeeeeCCceeccccCeeeeccCCCeeEec
Q 041030 8 PRVIVNGTRRTRTFHYFWCQSCQRTTRFR 36 (249)
Q Consensus 8 ~~~~~~~~~~~rt~~~yWCy~C~r~Vr~~ 36 (249)
|.|.|+|.+. =||.||.|+=-|.
T Consensus 35 ~~v~~~G~~~------RFCQQCsrFH~L~ 57 (60)
T 1wj0_A 35 TTALVGGIMQ------RFCQQCSRFHVLE 57 (60)
T ss_dssp SCEEETTEEE------CCCSSSCSCCBTT
T ss_pred CEEEECCEEE------ehhhhccCccCcc
Confidence 6788899744 4899999985553
No 141
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=42.42 E-value=16 Score=26.44 Aligned_cols=52 Identities=15% Similarity=0.280 Sum_probs=33.9
Q ss_pred CccccccccccccccCCCCCCCCccceEEe-ccCCccChhhHHHHHhh------CCCCCccccccccC
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMEL-PCKHLYHSDCIVPWLRH------YSTTCPVCRYELKD 224 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~L-pC~H~FH~~CI~~WL~~------~~~sCPvCR~~l~~ 224 (249)
+...|.+|...|..-.. -..- .||.+||..|....+.. ....|-.|-..|..
T Consensus 8 ~~~~C~~C~~~F~~~~R---------rHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKK---------EYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCSBCTTTCCBCCSSSC---------EEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred cCCCCcCcCCcccCccc---------cccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 35689999999987432 1222 39999999997543211 03468888666644
No 142
>2l9z_A PR domain zinc finger protein 4; zinc-binding domain, transcription; NMR {Homo sapiens}
Probab=42.26 E-value=8.9 Score=24.03 Aligned_cols=17 Identities=29% Similarity=0.823 Sum_probs=14.5
Q ss_pred eccccCeeeeccCCCee
Q 041030 17 RTRTFHYFWCQSCQRTT 33 (249)
Q Consensus 17 ~~rt~~~yWCy~C~r~V 33 (249)
-|.|-.+.||-.|++..
T Consensus 5 ~~~~~~yl~CE~C~~~~ 21 (39)
T 2l9z_A 5 NMATLFTIWCTLCDRAY 21 (39)
T ss_dssp CSCCSCSEEEGGGTEEE
T ss_pred cchhhhhhHHHHHhhhc
Confidence 48888999999999874
No 143
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.23 E-value=18 Score=25.78 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=23.7
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHH
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIV 205 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~ 205 (249)
+...|.+|...|..-..+ ----.||.+|+..|..
T Consensus 13 ~~~~C~~C~~~F~~~~Rr--------HHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKR--------RSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCC--------EECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhh--------hhhcCCCcEEChhhcC
Confidence 456899999999764321 1122399999999953
No 144
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=42.09 E-value=15 Score=26.21 Aligned_cols=34 Identities=12% Similarity=0.289 Sum_probs=24.0
Q ss_pred eeeeccCCCeeEeccCCCCCccCCCCCccceeecc
Q 041030 23 YFWCQSCQRTTRFRSTDPSELFCPHCSAQLYLELD 57 (249)
Q Consensus 23 ~yWCy~C~r~Vr~~~~~~s~~~CP~C~~gFlEEld 57 (249)
.-+|..|+..-.+.-. .--..||.|++-=...+.
T Consensus 37 ~I~CnDC~~~s~v~~h-~lg~kC~~C~SyNTr~~~ 70 (79)
T 2k2d_A 37 DILCNDCNGRSTVQFH-ILGMKCKICESYNTAQAG 70 (79)
T ss_dssp EEEESSSCCEEEEECC-TTCCCCTTTSCCCEEESC
T ss_pred EEECCCCCCCccCCce-eecccCcCCCCcCeEecC
Confidence 4799999999877654 112389999987665553
No 145
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=41.40 E-value=4.8 Score=28.48 Aligned_cols=48 Identities=23% Similarity=0.460 Sum_probs=30.4
Q ss_pred CccccccccccccccCCCCCCCCccceEEe--ccCCccChhhHHHHH---------hhCCCCCccccccc
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMEL--PCKHLYHSDCIVPWL---------RHYSTTCPVCRYEL 222 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~L--pC~H~FH~~CI~~WL---------~~~~~sCPvCR~~l 222 (249)
+...| ||-.....+. |+.-- .|...||..|+.--- .. +..||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~---------MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~-~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDS---------MIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPE-SFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSC---------EEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCS-SCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCC---------EEEECCccCCccccCEEEccccccccccccCCC-CEECCCCCccc
Confidence 35677 8988743332 24333 599999999984211 12 55799997654
No 146
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=41.39 E-value=6.3 Score=22.91 Aligned_cols=14 Identities=36% Similarity=0.933 Sum_probs=10.8
Q ss_pred CCCCccccccccCC
Q 041030 212 STTCPVCRYELKDS 225 (249)
Q Consensus 212 ~~sCPvCR~~l~~~ 225 (249)
+.+||+|+..++..
T Consensus 3 k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 3 DFCCPKCQYQAPDM 16 (28)
T ss_dssp CEECTTSSCEESSH
T ss_pred cccCccccccCcCh
Confidence 45799999887653
No 147
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=40.08 E-value=30 Score=25.22 Aligned_cols=36 Identities=22% Similarity=0.502 Sum_probs=29.7
Q ss_pred ccccccccccccccCCCCCCCCccceEEec--cCCccChhhHHHHHhh
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELP--CKHLYHSDCIVPWLRH 210 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~Lp--C~H~FH~~CI~~WL~~ 210 (249)
...|.+|.+.+++..- ++-| =.|.||..|-...++.
T Consensus 15 ~l~CtlC~erLEdtHF----------VQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLEDTHF----------VQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSSTTS----------EECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhccCce----------eeCCCccCCeeeccccHHHHHh
Confidence 5799999999998654 4554 4899999999988877
No 148
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.19 E-value=15 Score=25.56 Aligned_cols=42 Identities=24% Similarity=0.584 Sum_probs=30.9
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCCC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDSI 226 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~~ 226 (249)
...|+.|-+.+..++. ++ .-+..||..|. .|-.|+..|....
T Consensus 15 ~~~C~~C~~~I~~~e~---------v~--a~~~~wH~~CF---------~C~~C~~~L~~~~ 56 (82)
T 2co8_A 15 GDLCALCGEHLYVLER---------LC--VNGHFFHRSCF---------RCHTCEATLWPGG 56 (82)
T ss_dssp SCBCSSSCCBCCTTTB---------CC--BTTBCCBTTTC---------BCSSSCCBCCTTS
T ss_pred CCCCcccCCCcccceE---------EE--ECCCeeCCCcC---------EEcCCCCCcCCCc
Confidence 5689999999876554 33 35889999883 5888988876543
No 149
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.90 E-value=22 Score=23.58 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=29.1
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
...|+.|-+.+...+. ++. .-+..||..|. .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~~~---------~~~-a~~~~~H~~CF---------~C~~C~~~L~~ 45 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTR---------KME-YKGSSWHETCF---------ICHRCQQPIGT 45 (72)
T ss_dssp CCCBSSSCCCCCSSSC---------EEE-ETTEEEETTTT---------CCSSSCCCCCS
T ss_pred CCCCccCCCcccCCce---------EEE-ECcCeecccCC---------cccccCCccCC
Confidence 4589999999887543 322 25788998773 58888887754
No 150
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=38.90 E-value=20 Score=27.20 Aligned_cols=32 Identities=19% Similarity=0.372 Sum_probs=23.5
Q ss_pred CeeeeccCCCeeEeccCCCCCccCCCCCccceee
Q 041030 22 HYFWCQSCQRTTRFRSTDPSELFCPHCSAQLYLE 55 (249)
Q Consensus 22 ~~yWCy~C~r~Vr~~~~~~s~~~CP~C~~gFlEE 55 (249)
..|-|-.|.-..+ ..-..-..||.|.|..||+
T Consensus 66 ~p~~C~~CG~~F~--~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 66 KPAQCRKCGFVFK--AEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp CCCBBTTTCCBCC--CCSSCCSSCSSSCCCCBCC
T ss_pred ECcChhhCcCeec--ccCCCCCCCcCCCCCccCC
Confidence 5688999997762 1112236999999999987
No 151
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=38.63 E-value=16 Score=30.55 Aligned_cols=32 Identities=19% Similarity=0.571 Sum_probs=23.6
Q ss_pred ccccccccccccccCCCCCCCCccceEEe-ccCCccChhhHH
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMEL-PCKHLYHSDCIV 205 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~L-pC~H~FH~~CI~ 205 (249)
+..|.+|...|..-.. -..- .||++||..|..
T Consensus 161 ~~~C~~C~~~F~~~~r---------rhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNR---------KHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CSBCTTTCCBCCSSSC---------CEECTTTCCEECSTTSC
T ss_pred CCccCCCCCccCCccc---------ccccCCcCCEEChHHhC
Confidence 5799999999986432 1223 399999999954
No 152
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=38.31 E-value=5 Score=31.18 Aligned_cols=49 Identities=18% Similarity=0.324 Sum_probs=31.6
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccc
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYEL 222 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l 222 (249)
...|.+|...|..-..+ -.--.||.+||..|....... ...|-.|-..+
T Consensus 19 ~~~C~~C~~~Fs~~~Rk--------HHCR~CG~ifC~~Cs~~~~~~-vRVC~~C~~~~ 67 (120)
T 1y02_A 19 EPSCKSCGAHFANTARK--------QTCLDCKKNFCMTCSSQVGNG-PRLCLLCQRFR 67 (120)
T ss_dssp -CCCTTTCCCCSSGGGC--------EECTTTCCEECGGGEEC-----CCEEHHHHHHH
T ss_pred cCcccCcCCcccccccc--------ccCCCCCCeeCHHHhCCCCCC-ceECHHHHHHH
Confidence 45899999999764321 222349999999997666555 67788885433
No 153
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=37.69 E-value=6.2 Score=32.63 Aligned_cols=46 Identities=26% Similarity=0.639 Sum_probs=31.2
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhh---CCCCCccccccc
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRH---YSTTCPVCRYEL 222 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~---~~~sCPvCR~~l 222 (249)
+..|.||.+. |.. +.--.|...||..|+.+=|.. |.-.||.|+..-
T Consensus 2 ~~~C~~C~~~---g~l---------l~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GDL---------VMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SSC---------CCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---Cce---------eECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4579999854 222 333459999999999764433 234699998653
No 154
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.49 E-value=23 Score=23.52 Aligned_cols=41 Identities=20% Similarity=0.388 Sum_probs=29.4
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
...|+.|-+.+..++. + ...-+..||..|. .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~~~---------~-~~a~~~~~H~~CF---------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSR---------K-LEYGGQTWHEHCF---------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSC---------E-ECSTTCCEETTTC---------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCcc---------E-EEECccccCcccC---------eECCCCCcCCC
Confidence 4689999999886543 3 2236889998773 58888887754
No 155
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.11 E-value=5.7 Score=28.28 Aligned_cols=44 Identities=25% Similarity=0.563 Sum_probs=26.9
Q ss_pred ccccccccccccCCCCCCCCccceEEe-ccCCccChhhHHHHHhh---C-CCCCccccc
Q 041030 167 CCPICKEEFRVRDDVDDDSDEVMIMEL-PCKHLYHSDCIVPWLRH---Y-STTCPVCRY 220 (249)
Q Consensus 167 ~C~ICle~f~~~~~~~~~~~~~~v~~L-pC~H~FH~~CI~~WL~~---~-~~sCPvCR~ 220 (249)
.|.||...-..+ . +..- .|...||..|+.+=|.. | .=.||.|+.
T Consensus 28 ~C~vC~~~~~~~-~---------ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPN-M---------QLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCST-T---------EEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCC-C---------EEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 778887642222 2 3233 49999999999854433 1 235888864
No 156
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=36.82 E-value=5.8 Score=27.61 Aligned_cols=27 Identities=33% Similarity=0.706 Sum_probs=19.1
Q ss_pred ccCCccChhhHHHHHhh---C-CCCCccccc
Q 041030 194 PCKHLYHSDCIVPWLRH---Y-STTCPVCRY 220 (249)
Q Consensus 194 pC~H~FH~~CI~~WL~~---~-~~sCPvCR~ 220 (249)
.|...||..|+.+=|.. | .=.||.|+.
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 38 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 49999999999854443 1 236888864
No 157
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=36.36 E-value=15 Score=26.60 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=16.4
Q ss_pred eEecc-CCCCCccCCCCCccceee
Q 041030 33 TRFRS-TDPSELFCPHCSAQLYLE 55 (249)
Q Consensus 33 Vr~~~-~~~s~~~CP~C~~gFlEE 55 (249)
|.|.- ..+....||+|+--|+.+
T Consensus 43 VyL~ld~~~g~~~CpYCg~~f~l~ 66 (80)
T 2jvm_A 43 VWLSIPHETGFVECGYCDRRYIHE 66 (80)
T ss_dssp EEEECCTTTCEEECSSSSCEEEEH
T ss_pred EEEEccCCCCeEECCCCCCEEEec
Confidence 44443 234468999999999975
No 158
>2ewl_A Protein E7; HPV, oncoprotein, zinc binding, virus-viral protein COMP; NMR {Human papillomavirus} SCOP: g.91.1.1 PDB: 2f8b_A
Probab=36.29 E-value=9.2 Score=25.78 Aligned_cols=25 Identities=20% Similarity=0.667 Sum_probs=18.6
Q ss_pred eeccCCCeeEeccCC--------------CCCccCCCCC
Q 041030 25 WCQSCQRTTRFRSTD--------------PSELFCPHCS 49 (249)
Q Consensus 25 WCy~C~r~Vr~~~~~--------------~s~~~CP~C~ 49 (249)
.|+.|++.||+.-.. +-+++||.|.
T Consensus 15 ~C~~C~~~lRl~V~at~~~IR~lqqLLl~~L~lvCp~Ca 53 (56)
T 2ewl_A 15 VCCKCDGRIELTVESSAEDLRTLQQLFLSTLSFVCPWCA 53 (56)
T ss_dssp EBTTTCCEEEEEEECCHHHHHHHHHHHHHTCCBCCHHHH
T ss_pred ECCCCCCeEEEEEEeCchhHHHHHHHhhCCceEECcccc
Confidence 599999999986422 2358899885
No 159
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=36.16 E-value=20 Score=30.34 Aligned_cols=33 Identities=18% Similarity=0.518 Sum_probs=24.3
Q ss_pred ccccccccccccccCCCCCCCCccceEEe-ccCCccChhhHHH
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMEL-PCKHLYHSDCIVP 206 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~L-pC~H~FH~~CI~~ 206 (249)
+..|.+|...|..-.. -..- .||.+||..|...
T Consensus 164 ~~~C~~C~~~F~~~~R---------rhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTR---------KHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBC---------CEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCcccc---------ccccCCCcCEeChhhcCC
Confidence 5699999999986432 1223 3999999999654
No 160
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=34.41 E-value=16 Score=26.88 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=16.6
Q ss_pred eEeccCCCCCccCCCCCccceee
Q 041030 33 TRFRSTDPSELFCPHCSAQLYLE 55 (249)
Q Consensus 33 Vr~~~~~~s~~~CP~C~~gFlEE 55 (249)
|.|.-..+....||+|+-.|+.+
T Consensus 39 VyL~i~~~g~~~CpYCg~~y~~~ 61 (87)
T 2jz8_A 39 IFIDMGSTDEKICPYCSTLYRYD 61 (87)
T ss_dssp CEEECTTCCEECCTTTCCEEECC
T ss_pred EEEEcCCCCeEECCCCCCEeEcC
Confidence 44433334579999999999976
No 161
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.10 E-value=37 Score=22.53 Aligned_cols=40 Identities=20% Similarity=0.506 Sum_probs=29.0
Q ss_pred ccccccccccccc--cCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCcccccccc
Q 041030 165 VQCCPICKEEFRV--RDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELK 223 (249)
Q Consensus 165 ~~~C~ICle~f~~--~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~ 223 (249)
...|+-|-+.+.. ... ++. .-+..||.+|. .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~---------~~~-a~~~~wH~~CF---------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTK---------YIS-FEERQWHNDCF---------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCS---------CEE-CSSCEECTTTC---------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcc---------eEE-ECCcccCcccC---------EeccCCCcCC
Confidence 4689999998885 333 322 26889998873 5889988875
No 162
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=33.55 E-value=24 Score=22.44 Aligned_cols=32 Identities=16% Similarity=0.487 Sum_probs=22.7
Q ss_pred eeeeccCCC-eeEeccCCCCCccCCCCCccceee
Q 041030 23 YFWCQSCQR-TTRFRSTDPSELFCPHCSAQLYLE 55 (249)
Q Consensus 23 ~yWCy~C~r-~Vr~~~~~~s~~~CP~C~~gFlEE 55 (249)
.+-|-.|.. .+..-. ...+++|+.|+--|-|+
T Consensus 5 ~~~CP~C~~~~l~~d~-~~gelvC~~CG~v~~e~ 37 (50)
T 1pft_A 5 QKVCPACESAELIYDP-ERGEIVCAKCGYVIEEN 37 (50)
T ss_dssp CCSCTTTSCCCEEEET-TTTEEEESSSCCBCCCC
T ss_pred cEeCcCCCCcceEEcC-CCCeEECcccCCccccc
Confidence 467999987 555432 23479999998887764
No 163
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=33.40 E-value=10 Score=26.26 Aligned_cols=27 Identities=19% Similarity=0.481 Sum_probs=21.6
Q ss_pred eeeeccCCCeeEeccCCCCCccCCCCCccceee
Q 041030 23 YFWCQSCQRTTRFRSTDPSELFCPHCSAQLYLE 55 (249)
Q Consensus 23 ~yWCy~C~r~Vr~~~~~~s~~~CP~C~~gFlEE 55 (249)
.-.|..|++.|.+.. ..| +|++-|=-.
T Consensus 15 ~~rC~~C~kkvgl~~-----f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMG-----FKC-KCGSTFCGS 41 (64)
T ss_dssp SCSCTTTCCCCTTSC-----EEC-TTSCEECSS
T ss_pred CCcChhhCCcccccC-----eEe-ecCCEeccc
Confidence 467999999988762 689 999999743
No 164
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=33.20 E-value=21 Score=25.03 Aligned_cols=20 Identities=35% Similarity=0.858 Sum_probs=15.2
Q ss_pred eeccCCCeeEeccCCCCCccCCCCCcc
Q 041030 25 WCQSCQRTTRFRSTDPSELFCPHCSAQ 51 (249)
Q Consensus 25 WCy~C~r~Vr~~~~~~s~~~CP~C~~g 51 (249)
=|-.|.+-| . +-.||.|++.
T Consensus 13 AC~~C~~~~----~---~~~CPnC~s~ 32 (69)
T 1ryq_A 13 ACRHCHYIT----S---EDRCPVCGSR 32 (69)
T ss_dssp EETTTCBEE----S---SSSCTTTCCC
T ss_pred hHHhCCccc----c---CCcCCCccCC
Confidence 488999955 2 5699999854
No 165
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.64 E-value=40 Score=22.32 Aligned_cols=40 Identities=23% Similarity=0.565 Sum_probs=27.0
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCcccccccc
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELK 223 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~ 223 (249)
...|+.|-+.+...+. + ...=+..||..|. .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~---------~-~~a~~~~~H~~CF---------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGA---------G-VVALDRVFHVGCF---------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSC---------C-EECSSSEECTTTC---------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCce---------E-EEECCCeEcccCC---------cccccCCcCC
Confidence 4588889888775432 2 1224788888773 5888888774
No 166
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=31.26 E-value=16 Score=25.53 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=13.6
Q ss_pred CCCccCCCCCccceee
Q 041030 40 PSELFCPHCSAQLYLE 55 (249)
Q Consensus 40 ~s~~~CP~C~~gFlEE 55 (249)
.....||+|+--|+.+
T Consensus 38 ~g~~~CpYCg~~f~l~ 53 (67)
T 2jrr_A 38 TGWVECPYCDCKYVLK 53 (67)
T ss_dssp TSEEEETTTTEEEEET
T ss_pred CCeEECCCCCCEEEEC
Confidence 4468999999999976
No 167
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=30.77 E-value=8.3 Score=25.89 Aligned_cols=44 Identities=25% Similarity=0.480 Sum_probs=26.1
Q ss_pred CccccccccccccccCCCCCCCCccceEEec--cC-CccChhhHHHHHhh---CCCCCccccc
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELP--CK-HLYHSDCIVPWLRH---YSTTCPVCRY 220 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~Lp--C~-H~FH~~CI~~WL~~---~~~sCPvCR~ 220 (249)
+..-| ||.+... +.. +.-=. |. ..||..|+. |.. ++-.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g~m---------i~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GEM---------IGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SEE---------EECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CCe---------eEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 35567 9987532 211 32223 55 699999986 333 1346888864
No 168
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.64 E-value=35 Score=23.24 Aligned_cols=41 Identities=22% Similarity=0.472 Sum_probs=29.5
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
...|+.|-+.+..++. ++ ..=+..||..|. .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~~~---------~~-~a~~~~~H~~CF---------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQ---------NV-EYKGTVWHKDCF---------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSC---------EE-ECSSCEEETTTC---------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCce---------EE-EECccccccccC---------chhhCCCccCC
Confidence 4589999999886554 32 235889998773 58888887754
No 169
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=30.60 E-value=13 Score=31.97 Aligned_cols=46 Identities=26% Similarity=0.581 Sum_probs=24.9
Q ss_pred ccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhh---C-CCCCcccccc
Q 041030 167 CCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRH---Y-STTCPVCRYE 221 (249)
Q Consensus 167 ~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~---~-~~sCPvCR~~ 221 (249)
.|.||...-..+.. +.--.|...||..|+.+=|.. | .=.||.|+.+
T Consensus 176 ~C~vC~~~~~~~~l---------L~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQDPDKQ---------LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC--CC---------EECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCCCCCe---------EEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 57777654222221 333349999999999864443 1 2369999653
No 170
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=30.31 E-value=8.3 Score=25.93 Aligned_cols=24 Identities=29% Similarity=0.711 Sum_probs=16.3
Q ss_pred cC-CccChhhHHHHHhh---CCCCCccccc
Q 041030 195 CK-HLYHSDCIVPWLRH---YSTTCPVCRY 220 (249)
Q Consensus 195 C~-H~FH~~CI~~WL~~---~~~sCPvCR~ 220 (249)
|. ..||..|+. |.. +.-.||.|+.
T Consensus 31 C~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 31 CSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 44 689999986 443 2446888854
No 171
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=30.20 E-value=16 Score=25.17 Aligned_cols=40 Identities=23% Similarity=0.502 Sum_probs=27.1
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
...|+.|.+.+..++. +.. -+..||.+|. .|-.|+..|..
T Consensus 7 ~~~C~~C~~~I~~~~~---------~~a--~~~~~H~~CF---------~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEE---------VQC--DGRSFHRCCF---------LCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTE---------EEE--TTEEEESSSE---------ECSSSCCEECS
T ss_pred CCcCcCcCccccCcee---------EEe--CCcccccccC---------ccCCCCCCCCC
Confidence 4588889888876543 322 5778888773 47788877754
No 172
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=30.06 E-value=45 Score=24.76 Aligned_cols=25 Identities=24% Similarity=0.591 Sum_probs=19.6
Q ss_pred CeeeeCCceeccccCeeeeccCCCeeEeccC
Q 041030 8 PRVIVNGTRRTRTFHYFWCQSCQRTTRFRST 38 (249)
Q Consensus 8 ~~~~~~~~~~~rt~~~yWCy~C~r~Vr~~~~ 38 (249)
|.|+|+|... =||+||.|+=-|..-
T Consensus 40 ~~V~~~G~~~------RFCQQCsrFH~L~eF 64 (94)
T 1ul4_A 40 SSVFLSGLNQ------RFCQQCSRFHDLQEF 64 (94)
T ss_dssp SCEEETTEEE------EECTTTSSEEETTTC
T ss_pred CEEEECChhH------HHHHHHhccCCHHHh
Confidence 6788999743 479999999887654
No 173
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.79 E-value=37 Score=23.79 Aligned_cols=39 Identities=15% Similarity=0.468 Sum_probs=28.3
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
...|+.|-+.+. +.. + ..-+..||.+|. .|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~-~~~---------v--~a~~~~~H~~CF---------~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPF---------L--VALGKSWHPEEF---------NCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-SCE---------E--EETTEEECTTTC---------BCSSSCCBCSS
T ss_pred CCCCccCCCEec-ceE---------E--EECCccccccCC---------ccCCCCCCCCC
Confidence 568999999885 222 3 335889998773 58899888864
No 174
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=29.53 E-value=34 Score=27.44 Aligned_cols=48 Identities=17% Similarity=0.358 Sum_probs=30.0
Q ss_pred CccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCC--CCccccc
Q 041030 164 EVQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYST--TCPVCRY 220 (249)
Q Consensus 164 ~~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~--sCPvCR~ 220 (249)
.+..|.+|...|..-.. ....-..|+|.+|..|-. |+.. .. .|=+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~-------~g~~C~~C~~~VC~~C~~-~~~~-~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLN-------SRRQCLECSLFVCKSCSH-AHPE-EQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSS-------CCEECTTTCCEECGGGEE-CCSS-SSSCEEHHHHH
T ss_pred CCccchhhcCccccccC-------CCCcCCCCCchhhccccc-ccCC-CCcEeeHHHHH
Confidence 47899999998755322 014444599999999962 3322 22 3666643
No 175
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.47 E-value=37 Score=22.77 Aligned_cols=41 Identities=27% Similarity=0.677 Sum_probs=29.5
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
...|+-|-+.+...+. ++.. -+..||..|. .|-.|+..|..
T Consensus 11 ~~~C~~C~~~I~~~~~---------~~~a-~~~~~H~~CF---------~C~~C~~~L~~ 51 (77)
T 1g47_A 11 SATCERCKGGFAPAEK---------IVNS-NGELYHEQCF---------VCAQCFQQFPE 51 (77)
T ss_dssp CCBCSSSCCBCCSTTT---------CEEE-TTEEECTTTC---------CCTTTCCCCGG
T ss_pred CCCchhcCCccCCCce---------EEEe-CccEeccccC---------eECCCCCCCCC
Confidence 5689999999876444 3322 5788998773 58888887754
No 176
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=29.15 E-value=15 Score=26.23 Aligned_cols=28 Identities=18% Similarity=0.488 Sum_probs=22.6
Q ss_pred CeeeeccCCCeeEeccCCCCCccCCCCCccceee
Q 041030 22 HYFWCQSCQRTTRFRSTDPSELFCPHCSAQLYLE 55 (249)
Q Consensus 22 ~~yWCy~C~r~Vr~~~~~~s~~~CP~C~~gFlEE 55 (249)
....|..|++.|-+.. ..| +|+.-|=-.
T Consensus 24 ~~~RC~~C~kkvgL~~-----f~C-rCg~~FCs~ 51 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTG-----FKC-RCGSTFCGT 51 (74)
T ss_dssp CCCBCSSSCCBCTTTC-----EEC-TTSCEECTT
T ss_pred cCccchhhcCcccccc-----eEe-ccCCEeccc
Confidence 4578999999988863 689 999999743
No 177
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=29.06 E-value=17 Score=25.13 Aligned_cols=28 Identities=14% Similarity=0.542 Sum_probs=22.2
Q ss_pred CeeeeccCCCeeEeccCCCCCccCCCCCccceee
Q 041030 22 HYFWCQSCQRTTRFRSTDPSELFCPHCSAQLYLE 55 (249)
Q Consensus 22 ~~yWCy~C~r~Vr~~~~~~s~~~CP~C~~gFlEE 55 (249)
....|..|++.|-+.. ..| +|++-|=-.
T Consensus 14 ~~~rC~~C~kkvgl~~-----f~C-rCg~~FC~~ 41 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTG-----FMC-RCGTTFCGS 41 (64)
T ss_dssp SCCCCTTTCCCCCTTC-----EEC-SSSCEECTT
T ss_pred cCCcChhhCCccCccC-----EEe-ecCCEeccc
Confidence 3468999999988763 689 899999743
No 178
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=28.76 E-value=48 Score=24.31 Aligned_cols=25 Identities=20% Similarity=0.539 Sum_probs=19.2
Q ss_pred CeeeeCCceeccccCeeeeccCCCeeEeccC
Q 041030 8 PRVIVNGTRRTRTFHYFWCQSCQRTTRFRST 38 (249)
Q Consensus 8 ~~~~~~~~~~~rt~~~yWCy~C~r~Vr~~~~ 38 (249)
|.|.|+|... =||+||.|+=-|..-
T Consensus 35 ~~v~~~G~~~------RFCQQC~rFH~L~eF 59 (88)
T 1ul5_A 35 SFVVLDGENK------RYCQQCGKFHLLPDF 59 (88)
T ss_dssp SEEEETTEEE------EECTTTSSEEEGGGB
T ss_pred CEEEECCEee------HHHHHhccccChhhh
Confidence 5678888744 589999998877654
No 179
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.45 E-value=42 Score=22.65 Aligned_cols=40 Identities=20% Similarity=0.488 Sum_probs=28.4
Q ss_pred ccccccccccccc--cCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCcccccccc
Q 041030 165 VQCCPICKEEFRV--RDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELK 223 (249)
Q Consensus 165 ~~~C~ICle~f~~--~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~ 223 (249)
...|+.|-+.+.. ... ++ ..-+..||.+|. .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~---------~~-~a~~~~wH~~CF---------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAK---------FI-CFQDSQWHSECF---------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCC---------EE-EETTEEEEGGGC---------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCce---------eE-EECCcccCcccC---------ChhhCCCcCC
Confidence 4589999998885 222 32 236789998883 5888988875
No 180
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=28.08 E-value=24 Score=22.65 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=24.5
Q ss_pred cCeeeeccCCCeeEecc------CCCCCccCCCCCccceee
Q 041030 21 FHYFWCQSCQRTTRFRS------TDPSELFCPHCSAQLYLE 55 (249)
Q Consensus 21 ~~~yWCy~C~r~Vr~~~------~~~s~~~CP~C~~gFlEE 55 (249)
...|=|-.|........ .......|+.|+..|...
T Consensus 12 ~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~ 52 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEED 52 (62)
T ss_dssp SSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEEC
T ss_pred CCCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccC
Confidence 35699999998654321 112347999999999875
No 181
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=27.58 E-value=22 Score=26.77 Aligned_cols=13 Identities=23% Similarity=0.833 Sum_probs=11.5
Q ss_pred ccChhhHHHHHhh
Q 041030 198 LYHSDCIVPWLRH 210 (249)
Q Consensus 198 ~FH~~CI~~WL~~ 210 (249)
-||..|+..|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999985
No 182
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=27.54 E-value=22 Score=26.81 Aligned_cols=13 Identities=23% Similarity=0.848 Sum_probs=11.6
Q ss_pred ccChhhHHHHHhh
Q 041030 198 LYHSDCIVPWLRH 210 (249)
Q Consensus 198 ~FH~~CI~~WL~~ 210 (249)
-||..|+..|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999976
No 183
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=27.14 E-value=32 Score=24.21 Aligned_cols=30 Identities=17% Similarity=0.383 Sum_probs=23.7
Q ss_pred eeeecc--CCCeeEeccCCCCCccCC-----CCCccce
Q 041030 23 YFWCQS--CQRTTRFRSTDPSELFCP-----HCSAQLY 53 (249)
Q Consensus 23 ~yWCy~--C~r~Vr~~~~~~s~~~CP-----~C~~gFl 53 (249)
.-||-. |...|.... +...+.|| .|+-.|=
T Consensus 25 ~~~CP~p~C~~~v~~~~-~~~~v~C~~~~~~~C~~~FC 61 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEP-DQRKVTCEGGNGLGCGFAFC 61 (80)
T ss_dssp SCCCCSSSCCCCCCCCS-CTTSBCTTSSSTTCCSCCEE
T ss_pred cEECCCCCCCcccEECC-CCCcCCCCCCCCCCCCCeec
Confidence 579998 999987764 34468999 8998885
No 184
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=27.06 E-value=17 Score=24.73 Aligned_cols=42 Identities=24% Similarity=0.604 Sum_probs=27.6
Q ss_pred cccccccccccccCCCCCCCCccceEEec-cCCccChhhHHHHHhhCCCCCccc
Q 041030 166 QCCPICKEEFRVRDDVDDDSDEVMIMELP-CKHLYHSDCIVPWLRHYSTTCPVC 218 (249)
Q Consensus 166 ~~C~ICle~f~~~~~~~~~~~~~~v~~Lp-C~H~FH~~CI~~WL~~~~~sCPvC 218 (249)
..|--|...|.... +-.-+ |++.|+.+|=.---.. -..||-|
T Consensus 16 ~~C~~C~~~~~~~~----------~y~C~~C~~~FC~dCD~fiHe~-Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH----------VYVCAVCQNVFCVDCDVFVHDS-LHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE----------EECCTTTTCCBCHHHHHTTTTT-SCSSSTT
T ss_pred CcccccCcccCCCc----------cEECCccCcCcccchhHHHHhh-ccCCcCC
Confidence 46999999986422 22344 9999999995432222 3468887
No 185
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=26.67 E-value=20 Score=27.83 Aligned_cols=13 Identities=23% Similarity=1.035 Sum_probs=11.1
Q ss_pred eeeeccCCCeeEe
Q 041030 23 YFWCQSCQRTTRF 35 (249)
Q Consensus 23 ~yWCy~C~r~Vr~ 35 (249)
+.|||.|+..|..
T Consensus 96 ~vwCY~cd~~V~~ 108 (126)
T 2i50_A 96 SVWCYVCDNEVQY 108 (126)
T ss_dssp CEEETTTTEEECC
T ss_pred eEEeCCCCcEEEc
Confidence 3899999999974
No 186
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=26.04 E-value=25 Score=23.13 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=25.2
Q ss_pred cCeeeeccCCCeeEeccC---------CCCCccCCCCCcccee
Q 041030 21 FHYFWCQSCQRTTRFRST---------DPSELFCPHCSAQLYL 54 (249)
Q Consensus 21 ~~~yWCy~C~r~Vr~~~~---------~~s~~~CP~C~~gFlE 54 (249)
...|-|-.|.+....... ......|+.|+..|..
T Consensus 2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESS
T ss_pred CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCC
Confidence 467999999998755421 1234799999999986
No 187
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.89 E-value=53 Score=21.55 Aligned_cols=38 Identities=24% Similarity=0.574 Sum_probs=27.2
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCcccccccc
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELK 223 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~ 223 (249)
...|+.|.+.+.. + . +..-+..||.+|. .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~-~----------~-~~a~~~~~H~~CF---------~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITT-G----------G-VTYREQPWHKECF---------VCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCS-S----------E-EESSSSEEETTTS---------BCSSSCCBCT
T ss_pred CCCCcccCCeecc-c----------e-EEECccccCCCCC---------ccCCCCCcCC
Confidence 4589999998863 2 2 2336889998773 5888988874
No 188
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.73 E-value=33 Score=23.45 Aligned_cols=38 Identities=21% Similarity=0.414 Sum_probs=27.9
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCcccccccc
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELK 223 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~ 223 (249)
...|+.|-+.+.. .. +. --+..||.+|. .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~-~~---------~~--a~~~~~H~~CF---------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VF---------VK--LRDRHRHPECY---------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS-SC---------EE--CSSCEECTTTT---------SCSSSCCCHH
T ss_pred CCccccCCCCccC-cE---------EE--ECcceeCcCcC---------eeCCCCCCCC
Confidence 4689999998874 22 32 25789998884 5888888875
No 189
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.70 E-value=38 Score=22.35 Aligned_cols=39 Identities=26% Similarity=0.550 Sum_probs=27.4
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
...|..|-+.+.. .. +.. -+..||.+|. .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~-~~---------~~a--~~~~~H~~CF---------~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RV---------IKA--MNNSWHPECF---------RCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCS-CC---------EEE--TTEEECTTTS---------BCSSSCCBCSS
T ss_pred CCcCccCCCEecc-eE---------EEE--CcccccccCC---------EeCCCCCcCCC
Confidence 4589999988873 32 333 4788998773 58888887754
No 190
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.40 E-value=12 Score=26.12 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=21.7
Q ss_pred eeeccCCCeeEeccCCCCC-ccCCCCCcccee
Q 041030 24 FWCQSCQRTTRFRSTDPSE-LFCPHCSAQLYL 54 (249)
Q Consensus 24 yWCy~C~r~Vr~~~~~~s~-~~CP~C~~gFlE 54 (249)
..|..|++.|-|... + ..| +|++-|=-
T Consensus 16 ~rC~~C~kk~gL~~~---egf~C-rCg~~FC~ 43 (67)
T 1x4w_A 16 RRCFQCQTKLELVQQ---ELGSC-RCGYVFCM 43 (67)
T ss_dssp TBCSSSCCBCCHHHH---HHHCC-SSSCCCCT
T ss_pred CcchhhCCeeccccc---CceEe-cCCCEehh
Confidence 579999999998742 1 589 99999974
No 191
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=25.00 E-value=49 Score=24.89 Aligned_cols=49 Identities=22% Similarity=0.381 Sum_probs=30.2
Q ss_pred cCccccccccccccccCCCCCCCCccceEEe--ccCCccChhhHHHHHhh---CCCCCccccccccCC
Q 041030 163 NEVQCCPICKEEFRVRDDVDDDSDEVMIMEL--PCKHLYHSDCIVPWLRH---YSTTCPVCRYELKDS 225 (249)
Q Consensus 163 ~~~~~C~ICle~f~~~~~~~~~~~~~~v~~L--pC~H~FH~~CI~~WL~~---~~~sCPvCR~~l~~~ 225 (249)
..+..|.||.+. |+. +.-- .|-..||..|+. |.. |.-.||.|+-.+...
T Consensus 13 ~~~~~C~~C~~~---G~l---------l~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 13 MHEDYCFQCGDG---GEL---------VMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SSCSSCTTTCCC---SEE---------EECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCcCCCC---CcE---------eEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 346789999842 221 2222 377999999987 443 133588776655443
No 192
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=24.10 E-value=27 Score=25.52 Aligned_cols=30 Identities=17% Similarity=0.421 Sum_probs=22.9
Q ss_pred ccCeeeeccCCCeeEeccCCCCCccCCCCCcccee
Q 041030 20 TFHYFWCQSCQRTTRFRSTDPSELFCPHCSAQLYL 54 (249)
Q Consensus 20 t~~~yWCy~C~r~Vr~~~~~~s~~~CP~C~~gFlE 54 (249)
.-....|+.|++.|-+.. -..| +|+.-|=-
T Consensus 22 k~~~~rC~~C~kkvgl~~----~f~C-rCg~~FC~ 51 (85)
T 1wff_A 22 KKIMKHCFLCGKKTGLAT----SFEC-RCGNNFCA 51 (85)
T ss_dssp CCCCCBCSSSCCBCSSSS----CEEC-TTCCEECT
T ss_pred cccCccchhhCCeecccC----CeEc-CCCCEecc
Confidence 344578999999998852 2689 69999974
No 193
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.93 E-value=50 Score=23.03 Aligned_cols=39 Identities=21% Similarity=0.557 Sum_probs=28.1
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
...|..|.+.+.. . ++ ..-+..||.+|. .|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~~-~----------~~-~a~~~~~H~~CF---------~C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIVG-A----------VV-KARDKYRHPECF---------VCADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCCS-C----------CE-ESSSCEECTTTC---------CCSSSCCCTTT
T ss_pred CCCcccCCCEecc-c----------EE-EECCceECccCC---------EecCCCCCCCC
Confidence 4689999998874 2 22 236789998873 58889888754
No 194
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=23.79 E-value=18 Score=25.29 Aligned_cols=20 Identities=35% Similarity=0.512 Sum_probs=14.3
Q ss_pred HHHHhhCCCCCccccccccCC
Q 041030 205 VPWLRHYSTTCPVCRYELKDS 225 (249)
Q Consensus 205 ~~WL~~~~~sCPvCR~~l~~~ 225 (249)
++||.. --.||+|+.+|.-.
T Consensus 2 d~~LLe-iL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 2 DTKLLD-ILACPICKGPLKLS 21 (69)
T ss_dssp -CCGGG-TCCCTTTCCCCEEC
T ss_pred ChHHHh-heeCCCCCCcCeEe
Confidence 456666 77899999988643
No 195
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=23.36 E-value=38 Score=27.50 Aligned_cols=26 Identities=15% Similarity=0.446 Sum_probs=19.6
Q ss_pred ccCCccChhhHHHHHhhC---------CCCCcccc
Q 041030 194 PCKHLYHSDCIVPWLRHY---------STTCPVCR 219 (249)
Q Consensus 194 pC~H~FH~~CI~~WL~~~---------~~sCPvCR 219 (249)
.|...||.+||..++..+ .=+|=+|.
T Consensus 98 ~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 98 NCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp TTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 388999999999987764 12577774
No 196
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=23.18 E-value=17 Score=32.92 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=0.0
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhC------CCCCcccccc
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHY------STTCPVCRYE 221 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~------~~sCPvCR~~ 221 (249)
...|.+|...|..-..+ ..--.||++||..|...++... ...|-.|-..
T Consensus 375 ~~~c~~c~~~f~~~~r~--------h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRR--------HHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGE 429 (434)
T ss_dssp ---------------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchh--------hhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHH
Confidence 56899999999754220 1222499999999987654321 2356666443
No 197
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=23.14 E-value=14 Score=25.05 Aligned_cols=43 Identities=26% Similarity=0.510 Sum_probs=25.5
Q ss_pred ccccccccccccccCCCCCCCCccceEEec--cC-CccChhhHHHHHhh---CCCCCccccc
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELP--CK-HLYHSDCIVPWLRH---YSTTCPVCRY 220 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~Lp--C~-H~FH~~CI~~WL~~---~~~sCPvCR~ 220 (249)
..-| ||..... +.. +.-=. |. ..||..|+. |.. ++-.||.|+.
T Consensus 11 ~~yC-~C~~~~~-g~M---------I~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVSY-GEM---------IGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEECC-SEE---------EECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCCC-CCe---------eeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 5567 9987532 211 22223 44 799999986 332 1446888865
No 198
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=22.80 E-value=48 Score=30.59 Aligned_cols=27 Identities=19% Similarity=0.461 Sum_probs=20.4
Q ss_pred ccCCccChhhHHHHHhhC---------CCCCccccc
Q 041030 194 PCKHLYHSDCIVPWLRHY---------STTCPVCRY 220 (249)
Q Consensus 194 pC~H~FH~~CI~~WL~~~---------~~sCPvCR~ 220 (249)
.|...||++||..++..+ .=+|=+|.-
T Consensus 112 ~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 112 DCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp TCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 588999999999998442 236877853
No 199
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=22.73 E-value=13 Score=21.19 Aligned_cols=14 Identities=36% Similarity=0.871 Sum_probs=10.4
Q ss_pred CCccccccccCCCC
Q 041030 214 TCPVCRYELKDSII 227 (249)
Q Consensus 214 sCPvCR~~l~~~~~ 227 (249)
.||+|.+-++...+
T Consensus 8 qcpvcqq~mpaahi 21 (29)
T 3vhs_A 8 QCPVCQQMMPAAHI 21 (29)
T ss_dssp ECTTTCCEEEGGGH
T ss_pred eChHHHHhCcHHHH
Confidence 69999887765543
No 200
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.64 E-value=41 Score=23.58 Aligned_cols=40 Identities=20% Similarity=0.600 Sum_probs=27.6
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
...|+.|-+.+...+. + ..-+..||..|. .|=.|...|..
T Consensus 15 ~~~C~~C~~~I~~~~~---------v--~a~~~~~H~~CF---------~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMER---------L--LANQQVFHISCF---------RCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSE---------E--ECSSSEEETTTC---------BCTTTCCBCCT
T ss_pred CCcCccCCCccCCcee---------E--EECCCEECCCCC---------eeCCCCCCCCC
Confidence 4588888888876443 3 346788888773 47778777754
No 201
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.33 E-value=61 Score=22.00 Aligned_cols=39 Identities=26% Similarity=0.614 Sum_probs=27.1
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
...|+.|-+.+. +.. +.. -+..||.+|. .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~-~~~---------v~a--~~~~wH~~CF---------~C~~C~~~L~~ 53 (81)
T 1v6g_A 15 GTRCFSCDQFIE-GEV---------VSA--LGKTYHPDCF---------VCAVCRLPFPP 53 (81)
T ss_dssp CCBCTTTCCBCC-SCC---------EEE--TTEEECTTTS---------SCSSSCCCCCS
T ss_pred CCcCccccCEec-cce---------EEE--CCceeCccCC---------ccccCCCCCCC
Confidence 358999999887 333 333 5788998773 58788877753
No 202
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=22.07 E-value=43 Score=21.88 Aligned_cols=42 Identities=26% Similarity=0.684 Sum_probs=29.9
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccCC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKDS 225 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~~ 225 (249)
...|+.|.+.+..++. ++. .=+..||..|. .|=.|...|...
T Consensus 11 ~~~C~~C~~~i~~~e~---------~~~-~~~~~~H~~CF---------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEK---------IVN-SNGELYHEQCF---------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCE---------EEE-ETTEEEETTTS---------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCce---------EEE-eCcCeeCcCCC---------cccCCCCCCCCC
Confidence 5689999999886554 332 35778998874 588888877543
No 203
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=21.67 E-value=46 Score=21.65 Aligned_cols=39 Identities=15% Similarity=0.444 Sum_probs=28.1
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCccccccccC
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELKD 224 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~~ 224 (249)
...|+.|-+.+. +. + ...-+..||..|. .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~-~~----------~-~~a~~~~~H~~CF---------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GR----------V-VNAMGKQWHVEHF---------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SC----------E-ECCTTSBEETTTC---------BCTTTCCBCSS
T ss_pred CCCCcccCCEec-ce----------E-EEECccccccCcC---------EECCCCCCCCC
Confidence 458999999887 32 2 2346789998773 58899888853
No 204
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=21.46 E-value=37 Score=29.51 Aligned_cols=28 Identities=21% Similarity=0.777 Sum_probs=0.0
Q ss_pred eeccCCC-eeEecc--CCCCCccCCCCCccc
Q 041030 25 WCQSCQR-TTRFRS--TDPSELFCPHCSAQL 52 (249)
Q Consensus 25 WCy~C~r-~Vr~~~--~~~s~~~CP~C~~gF 52 (249)
||-.|.. .+.--. .+-.|.+||.|...|
T Consensus 36 yCPnCG~~~l~~f~nN~PVaDF~C~~C~Eey 66 (257)
T 4esj_A 36 YCPNCGNNPLNHFENNRPVADFYCNHCSEEF 66 (257)
T ss_dssp CCTTTCCSSCEEC----CCCEEECTTTCCEE
T ss_pred cCCCCCChhhhhccCCCcccccccCCcchhh
No 205
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=20.94 E-value=77 Score=27.29 Aligned_cols=36 Identities=19% Similarity=0.497 Sum_probs=23.9
Q ss_pred eeccccCeeeeccCCCeeEeccCC---CCCccCCCCCcc
Q 041030 16 RRTRTFHYFWCQSCQRTTRFRSTD---PSELFCPHCSAQ 51 (249)
Q Consensus 16 ~~~rt~~~yWCy~C~r~Vr~~~~~---~s~~~CP~C~~g 51 (249)
+-.=+...|.|-.|...+.+.... ..-..||.|++.
T Consensus 127 ~p~~~~~~f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~ 165 (279)
T 1ltl_A 127 RPRIVKAVFECRGCMRHHAVTQSTNMITEPSLCSECGGR 165 (279)
T ss_dssp EEEEEEEEEEETTTCCEEEEECSSSSCCCCSCCTTTCCC
T ss_pred EEEEEEEEEEcCCCCCEEEEEecCCcccCCCcCCCCCCC
Confidence 333345789999999876655321 112589999986
No 206
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=20.62 E-value=43 Score=25.12 Aligned_cols=26 Identities=27% Similarity=0.655 Sum_probs=20.2
Q ss_pred cCeeeeccCCCeeEeccCCCCCccCCCCCccc
Q 041030 21 FHYFWCQSCQRTTRFRSTDPSELFCPHCSAQL 52 (249)
Q Consensus 21 ~~~yWCy~C~r~Vr~~~~~~s~~~CP~C~~gF 52 (249)
...|.|-.|+..+.. ..+||.|+..+
T Consensus 46 g~~~hC~~C~~~f~~------~a~CPdC~q~L 71 (101)
T 2jne_A 46 NGHARCRSCGEFIEM------KALCPDCHQPL 71 (101)
T ss_dssp TTEEEETTTCCEEEE------EEECTTTCSBC
T ss_pred CCEEECccccchhhc------cccCcchhhHH
Confidence 355679999998876 36899998764
No 207
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=20.61 E-value=36 Score=25.74 Aligned_cols=39 Identities=23% Similarity=0.545 Sum_probs=29.1
Q ss_pred ccccccccccccccCCCCCCCCccceEEeccCCccChhhHHHHHhhCCCCCcccccccc
Q 041030 165 VQCCPICKEEFRVRDDVDDDSDEVMIMELPCKHLYHSDCIVPWLRHYSTTCPVCRYELK 223 (249)
Q Consensus 165 ~~~C~ICle~f~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~~sCPvCR~~l~ 223 (249)
...|+-|-+.+..... + .--+..||..|. .|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~---------v--~a~~~~wH~~CF---------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFL---------L--YAMDSYWHSRCL---------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSE---------E--EETTEEEETTTS---------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEE---------E--EeCCcEEccccc---------CcCcCCCccc
Confidence 4689999998875432 2 236889998883 5999998885
No 208
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=20.34 E-value=17 Score=25.28 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=14.8
Q ss_pred HHHHhhCCCCCccccccccCC
Q 041030 205 VPWLRHYSTTCPVCRYELKDS 225 (249)
Q Consensus 205 ~~WL~~~~~sCPvCR~~l~~~ 225 (249)
++||.. --.||+|+.+|.-.
T Consensus 4 d~~LLe-iL~CP~ck~~L~~~ 23 (67)
T 2jny_A 4 DPQLLE-VLACPKDKGPLRYL 23 (67)
T ss_dssp CGGGTC-CCBCTTTCCBCEEE
T ss_pred CHHHHH-HhCCCCCCCcCeEe
Confidence 456666 77899999988543
Done!