BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041036
         (504 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PVL|A Chain A, Structure Of Myosin Viia Myth4-Ferm-Sh3 In Complex With
           The Cen1 Of Sans
          Length = 655

 Score = 32.3 bits (72), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 15/101 (14%)

Query: 119 CINRAIGTFLAGSLGVGVHWIAFHSGKNLEPIVLGISLF------LLASAATFSRFM--- 169
           C  R   TF+ G+      W+   + K+ +PI+L ++        LL  +AT +R +   
Sbjct: 233 CEERLRRTFVNGTRTQPPSWLELQATKSKKPIMLPVTFMDGTTKTLLTDSATTARELCNA 292

Query: 170 ----PTIKARFDYGIMIFILTFSLVSVSGYRVDRLLELAQQ 206
                ++K RF  G  ++I  F  VS  G   D +++   Q
Sbjct: 293 LADKISLKDRF--GFSLYIALFDKVSSLGSGSDHVMDAISQ 331


>pdb|3NRF|A Chain A, Crystal Structure Of An Apag Protein (Pa1934) From
           Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
 pdb|3NRF|B Chain B, Crystal Structure Of An Apag Protein (Pa1934) From
           Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
 pdb|3SB3|A Chain A, Crystal Structure Of An Apag Protein (Pa1934) From
           Pseudomonas Aeruginosa Pao1 At 1.83 A Resolution
          Length = 106

 Score = 28.9 bits (63), Expect = 7.7,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%)

Query: 373 KQSSKINLSVGEMNFAVQELKHALISLPNHNISIKNPSPSTVEASG 418
           +Q  K ++SVG+ +F  Q  K  L++     IS+KN       A+G
Sbjct: 12  RQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAG 57


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,845,252
Number of Sequences: 62578
Number of extensions: 452467
Number of successful extensions: 923
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 922
Number of HSP's gapped (non-prelim): 2
length of query: 504
length of database: 14,973,337
effective HSP length: 103
effective length of query: 401
effective length of database: 8,527,803
effective search space: 3419649003
effective search space used: 3419649003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)