Query 041036
Match_columns 504
No_of_seqs 369 out of 1465
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:10:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041036.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041036hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11744 ALMT: Aluminium activ 100.0 2.4E-92 5.2E-97 737.0 41.2 404 57-465 1-406 (406)
2 KOG4711 Predicted membrane pro 100.0 5.5E-66 1.2E-70 557.2 19.4 433 43-476 69-599 (625)
3 TIGR01666 YCCS hypothetical me 100.0 9.4E-27 2E-31 259.5 37.1 301 58-399 372-672 (704)
4 TIGR01667 YCCS_YHJK integral m 100.0 1.1E-26 2.4E-31 259.6 36.7 279 55-368 371-649 (701)
5 PF04632 FUSC: Fusaric acid re 99.9 1.8E-25 3.9E-30 249.3 34.3 280 66-375 1-286 (650)
6 PRK10631 p-hydroxybenzoic acid 99.9 2.7E-24 5.8E-29 237.1 31.0 219 61-303 3-231 (652)
7 PRK11427 multidrug efflux syst 99.9 9.8E-22 2.1E-26 215.9 31.6 186 56-251 340-526 (683)
8 COG1289 Predicted membrane pro 99.8 4.8E-17 1E-21 182.9 28.8 183 60-258 348-531 (674)
9 PRK11427 multidrug efflux syst 99.7 6.9E-15 1.5E-19 162.2 31.4 172 61-250 24-202 (683)
10 COG4129 Predicted membrane pro 99.7 2.3E-14 5E-19 147.2 30.5 161 68-251 11-171 (332)
11 PF13515 FUSC_2: Fusaric acid 99.7 1.9E-15 4.2E-20 134.0 14.2 118 90-221 8-128 (128)
12 PF06081 DUF939: Bacterial pro 99.6 3.1E-14 6.6E-19 129.9 16.7 136 69-225 6-141 (141)
13 COG1289 Predicted membrane pro 99.6 4.2E-13 9.2E-18 151.1 28.3 165 64-241 8-175 (674)
14 PF10337 DUF2422: Protein of u 99.3 1.4E-08 3.1E-13 109.7 34.4 264 57-329 6-312 (459)
15 PF04632 FUSC: Fusaric acid re 99.3 1.3E-08 2.9E-13 114.0 34.0 175 64-250 337-514 (650)
16 PF12805 FUSC-like: FUSC-like 98.9 1.1E-06 2.5E-11 89.1 27.4 177 203-398 70-254 (284)
17 TIGR01667 YCCS_YHJK integral m 98.8 7.2E-06 1.6E-10 92.9 30.1 295 66-398 7-310 (701)
18 TIGR01666 YCCS hypothetical me 98.8 1.1E-05 2.4E-10 91.3 31.2 175 66-259 7-183 (704)
19 PF10334 DUF2421: Protein of u 98.7 2.2E-06 4.7E-11 84.5 22.3 216 225-464 1-224 (229)
20 PRK10631 p-hydroxybenzoic acid 98.1 0.0052 1.1E-07 69.2 31.0 160 67-241 353-517 (652)
21 PF11168 DUF2955: Protein of u 97.1 0.017 3.7E-07 52.7 14.4 137 70-224 2-139 (140)
22 TIGR02865 spore_II_E stage II 92.4 26 0.00057 40.8 26.1 125 120-256 189-330 (764)
23 PF12732 YtxH: YtxH-like prote 84.6 4.4 9.5E-05 32.6 6.9 46 209-255 3-48 (74)
24 PF10011 DUF2254: Predicted me 81.8 26 0.00056 37.2 13.3 75 179-257 99-174 (371)
25 PF06081 DUF939: Bacterial pro 80.1 8.8 0.00019 34.9 7.9 48 90-138 92-139 (141)
26 PRK11677 hypothetical protein; 75.7 15 0.00032 33.5 7.9 49 209-257 8-57 (134)
27 COG5336 Uncharacterized protei 74.0 12 0.00026 32.7 6.4 47 115-167 45-91 (116)
28 PF12805 FUSC-like: FUSC-like 71.7 1.2E+02 0.0026 30.7 23.6 51 198-249 69-123 (284)
29 COG4129 Predicted membrane pro 71.3 28 0.00061 36.4 9.8 34 116-153 6-39 (332)
30 PF06123 CreD: Inner membrane 70.8 21 0.00045 38.7 8.9 52 73-125 331-382 (430)
31 COG4980 GvpP Gas vesicle prote 68.2 21 0.00045 31.7 6.8 43 208-251 8-50 (115)
32 PRK11715 inner membrane protei 63.6 52 0.0011 35.8 10.2 54 72-126 336-389 (436)
33 PRK10263 DNA translocase FtsK; 61.5 2.6E+02 0.0056 34.7 16.2 14 112-125 67-80 (1355)
34 TIGR03480 HpnN hopanoid biosyn 60.1 1.3E+02 0.0028 35.5 13.6 20 209-228 835-854 (862)
35 PF06295 DUF1043: Protein of u 58.2 57 0.0012 29.3 8.0 43 209-251 4-47 (128)
36 PRK12821 aspartyl/glutamyl-tRN 57.6 1.8E+02 0.0039 31.8 12.7 114 108-222 93-238 (477)
37 PF11085 YqhR: Conserved membr 57.0 1.6E+02 0.0035 27.9 10.9 26 106-134 53-78 (173)
38 PRK09823 putative inner membra 55.2 1.7E+02 0.0037 26.8 10.3 90 119-225 12-104 (160)
39 PF06496 DUF1097: Protein of u 54.5 1.7E+02 0.0037 26.6 16.2 68 96-165 20-87 (144)
40 PF12841 YvrJ: YvrJ protein fa 53.5 32 0.00069 24.4 4.3 31 436-466 6-36 (38)
41 PF11992 DUF3488: Domain of un 53.4 2.8E+02 0.006 28.7 16.2 9 221-229 172-180 (325)
42 PF09877 DUF2104: Predicted me 51.9 1.2E+02 0.0026 26.1 8.3 16 209-224 82-97 (99)
43 PF07155 ECF-ribofla_trS: ECF- 49.7 2E+02 0.0044 26.3 10.6 27 201-227 139-165 (169)
44 COG5547 Small integral membran 46.8 82 0.0018 24.5 5.9 24 116-139 4-27 (62)
45 TIGR00796 livcs branched-chain 45.4 4.1E+02 0.0088 28.3 17.7 76 55-138 202-279 (378)
46 PF13295 DUF4077: Domain of un 43.9 2.2E+02 0.0048 25.3 9.1 77 152-233 54-142 (175)
47 PRK11412 putative uracil/xanth 43.0 4.3E+02 0.0094 28.7 13.2 24 201-224 189-212 (433)
48 COG4452 CreD Inner membrane pr 41.4 1.8E+02 0.0039 31.1 9.4 78 72-153 330-408 (443)
49 PF04018 DUF368: Domain of unk 41.1 4E+02 0.0086 27.0 18.9 81 91-173 80-162 (257)
50 PF13515 FUSC_2: Fusaric acid 40.9 64 0.0014 27.8 5.5 40 185-227 19-58 (128)
51 PRK09776 putative diguanylate 39.1 6.1E+02 0.013 30.2 15.0 14 123-136 75-88 (1092)
52 COG4956 Integral membrane prot 38.1 3.9E+02 0.0086 27.9 11.1 27 118-144 3-30 (356)
53 PF04286 DUF445: Protein of un 37.9 25 0.00055 36.2 2.8 21 120-140 344-364 (367)
54 COG4325 Predicted membrane pro 37.5 89 0.0019 33.4 6.5 23 237-259 189-211 (464)
55 PF03419 Peptidase_U4: Sporula 37.3 1.3E+02 0.0028 30.7 7.8 18 120-137 34-51 (293)
56 PF14351 DUF4401: Domain of un 33.8 5.4E+02 0.012 26.4 12.1 65 69-136 58-123 (326)
57 TIGR00930 2a30 K-Cl cotranspor 33.8 2.2E+02 0.0048 34.2 9.9 28 109-137 139-166 (953)
58 COG5438 Predicted multitransme 33.6 1.6E+02 0.0035 31.4 7.7 46 96-141 177-226 (385)
59 PHA00736 hypothetical protein 32.3 2.6E+02 0.0055 22.3 6.8 52 116-171 5-57 (79)
60 PRK15385 magnesium transport p 30.9 3.4E+02 0.0073 26.9 9.1 39 69-107 4-45 (225)
61 PF10112 Halogen_Hydrol: 5-bro 30.8 1.4E+02 0.0031 28.5 6.5 18 120-137 5-22 (199)
62 PRK10490 sensor protein KdpD; 28.3 3.7E+02 0.008 32.0 10.6 7 7-13 277-283 (895)
63 PF14348 DUF4400: Domain of un 28.2 2.6E+02 0.0057 26.6 7.9 47 57-107 138-185 (198)
64 cd02431 Ferritin_CCC1_C CCC1-r 28.0 4.2E+02 0.009 24.4 8.8 21 123-143 36-57 (149)
65 PF11744 ALMT: Aluminium activ 28.0 7.9E+02 0.017 26.5 12.2 40 101-140 128-169 (406)
66 COG2233 UraA Xanthine/uracil p 27.3 3.5E+02 0.0075 29.7 9.3 41 181-226 177-217 (451)
67 PF07907 YibE_F: YibE/F-like p 27.1 2.8E+02 0.006 27.8 8.0 69 70-140 22-97 (244)
68 PF10779 XhlA: Haemolysin XhlA 27.0 68 0.0015 25.6 3.0 19 121-139 51-69 (71)
69 COG4980 GvpP Gas vesicle prote 26.9 63 0.0014 28.6 3.0 18 123-140 8-25 (115)
70 PF10031 DUF2273: Small integr 26.8 2.6E+02 0.0057 21.0 5.9 20 120-139 8-27 (51)
71 PRK09855 PTS system N-acetylga 25.9 3.1E+02 0.0068 27.8 8.1 95 108-223 99-195 (263)
72 COG3275 LytS Putative regulato 25.6 6.7E+02 0.014 27.9 10.8 17 383-399 392-408 (557)
73 PRK11660 putative transporter; 25.6 4.3E+02 0.0093 29.6 10.0 16 209-224 424-439 (568)
74 PF07444 Ycf66_N: Ycf66 protei 24.5 4.2E+02 0.0092 22.2 8.8 53 149-201 8-62 (84)
75 TIGR00400 mgtE Mg2+ transporte 23.2 4.7E+02 0.01 28.3 9.6 18 123-140 360-377 (449)
76 PF02674 Colicin_V: Colicin V 23.2 5E+02 0.011 22.8 8.3 85 49-140 14-116 (146)
77 PF10498 IFT57: Intra-flagella 23.1 9.2E+02 0.02 25.6 14.9 49 347-399 299-347 (359)
78 smart00793 AgrB Accessory gene 22.6 4.5E+02 0.0097 24.8 8.2 55 59-114 16-70 (184)
79 COG4035 Predicted membrane pro 22.4 79 0.0017 26.9 2.6 40 91-140 62-105 (108)
80 PF03323 GerA: Bacillus/Clostr 22.1 2.2E+02 0.0048 31.3 6.7 63 122-193 347-409 (470)
81 PF00873 ACR_tran: AcrB/AcrD/A 21.6 1.5E+03 0.032 27.4 16.7 34 198-231 454-487 (1021)
82 TIGR00828 EIID-AGA PTS system, 20.9 7.9E+02 0.017 25.0 9.9 26 199-224 176-201 (271)
83 COG3105 Uncharacterized protei 20.9 6.4E+02 0.014 22.9 8.8 46 209-255 13-60 (138)
84 PF04982 HPP: HPP family; Int 20.5 5.9E+02 0.013 22.4 12.7 40 99-140 6-45 (120)
85 COG2733 Predicted membrane pro 20.4 41 0.0009 35.8 0.6 20 121-140 392-411 (415)
86 PRK01100 putative accessory ge 20.4 5.6E+02 0.012 24.8 8.5 27 66-92 35-61 (210)
87 PF03176 MMPL: MMPL family; I 20.3 7.6E+02 0.017 25.0 10.1 20 209-228 278-297 (333)
88 COG4291 Predicted membrane pro 20.2 5.1E+02 0.011 25.4 7.8 18 123-140 24-41 (228)
No 1
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=100.00 E-value=2.4e-92 Score=736.96 Aligned_cols=404 Identities=53% Similarity=0.908 Sum_probs=375.4
Q ss_pred HhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHH
Q 041036 57 WNLAVDEPKKVIHGLKVGLAISLVSLFYYMRPLYDGVGGNAMWAVMTVVVVFESSVGATLGKCINRAIGTFLAGSLGVGV 136 (504)
Q Consensus 57 ~~~~~~dp~~~~~AlK~glA~~Lasll~~~~~~~~~l~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliG~~la~~i 136 (504)
|++|++||||++|++|+|+|++|+++++|..+.|.+++.|++||+|||++|++||+|+|+.||+||++||++||++|+++
T Consensus 1 w~~g~~d~rr~~~~lkvglal~lvsl~~~~~~~~~~~~~~~~WavlTVvvvfe~tvGatl~KG~nR~lGTl~aG~La~~~ 80 (406)
T PF11744_consen 1 WKFGKDDPRRVIHSLKVGLALTLVSLLYFVGPLYDGFGQNAMWAVLTVVVVFEPTVGATLSKGLNRGLGTLLAGILAFGV 80 (406)
T ss_pred CcccccCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHhhhHhhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHH
Q 041036 137 HWIAFHSGKNLEPIVLGISLFLLASAATFSRFMPTIKARFDYGIMIFILTFSLVSVSGYRVDRLLELAQQRLSTIAIGAS 216 (504)
Q Consensus 137 ~~l~~~~g~~~~p~~l~l~vfl~~~~~~~~~f~p~~k~~~~Ya~~if~lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~ 216 (504)
.++....|++++++++++++|+++++++|.||+|.+|+||+||+.+|++||++|++++|++++++.+|..|+..|++|++
T Consensus 81 ~~la~~~g~~~~~~~i~~~vFi~~~~atf~r~~P~~k~rydYg~~Vf~LTf~lV~vs~yr~~~~~~~A~~R~~~I~iGv~ 160 (406)
T PF11744_consen 81 SWLASLSGDPGEPIVIGISVFIIGFIATFVRFIPKIKARYDYGGLVFILTFCLVAVSGYRTDEFLMLAVWRLLTIVIGVA 160 (406)
T ss_pred HHHHHhcCccchhHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHhheeecCCcchHHHHHHHHHHHHHHHHH
Confidence 99998889878999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-chhh-hhhhHHHHHHHHHhhcHHHHHHHHhhh
Q 041036 217 ICIIISMLFCPMWAGDELHLLICQNLEKLAHSLDECVVEYFRHNKTS-TAKD-EACSKKMKGYRCALNSKATEELKANFA 294 (504)
Q Consensus 217 iallvs~li~P~~a~~~L~~~l~~~l~~la~~l~~~~~~y~~~~e~~-~~~~-~~~~~~~~~yr~~L~s~~~~e~l~~~a 294 (504)
+|+++|++|||.|++++||+.++++++++++++++|+++|++..+.. ...+ ...++.+++||++|+|++++|+++++|
T Consensus 161 i~l~vsi~IfPvwAg~~Lh~~~a~~leklA~~le~~v~~y~~~~~~~~~~~~~~~~~~~~~~yk~vl~Sk~~eesL~~~A 240 (406)
T PF11744_consen 161 ICLLVSIFIFPVWAGEDLHKLTAKNLEKLANSLEGCVEEYFKCSEDEILDYQQESDDPLLQGYKSVLNSKSQEESLANFA 240 (406)
T ss_pred HHHHHHHheeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccccccccccHHHHhhhHHhCCcccHHHHhhhh
Confidence 99999999999999999999999999999999999999999887543 1122 245679999999999999999999999
Q ss_pred ccCCCCCCccccccHHHHHHHHHHHHHHHHHHHHhhhchhccCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccc
Q 041036 295 RWEPAHGRFSFRHPWKQYLKIGASIRNCAYCIETLHGCVDSETQAPPHLKRHLNNICMRLSSSSSNVLQELAFALKTMKQ 374 (504)
Q Consensus 295 ~~EP~~gr~~~r~p~~~Y~~l~~~lr~~a~~i~aL~~~l~~~~q~p~~~r~~~~~~~~~l~~e~~~~L~~La~si~~m~~ 374 (504)
+|||+||+|+|+|||+||+|+++++|||+|+++|||+|+++++|+|+++|+.|+++|++++.|++++||||+.+|++|++
T Consensus 241 ~WEP~HG~f~f~~Pw~~Y~kig~~lR~cay~v~AL~gcl~seiq~p~~~r~~~~~~~~~~~~e~~kvLrel~~~ik~m~~ 320 (406)
T PF11744_consen 241 RWEPPHGRFRFRHPWKQYLKIGALLRHCAYCVEALHGCLNSEIQAPPELRQKFQEECTRVSSESAKVLRELSNSIKTMTK 320 (406)
T ss_pred hhcccccCCccCCcHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCChhhHHHHHHHHHHHHhhCCccccccCCCCCCccccCCCCCCCCccccccccchhhhhhHHHHHHHHHHHHHHH
Q 041036 375 SSKINLSVGEMNFAVQELKHALISLPNHNISIKNPSPSTVEASGNCNTEPITSIRASSSFMEILPLATLASLLIENAAKI 454 (504)
Q Consensus 375 ~~~~~~~~~~~~~A~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sll~e~v~~~ 454 (504)
+++.+.++.++|+|+|+||.+|+++|++|++++++.. +...........+.+.+++++||+|||||||||+|+|+
T Consensus 321 ~~~~~~~~~~~~~A~~~Lq~~l~~~~~ll~~s~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~lat~aSlLie~v~r~ 395 (406)
T PF11744_consen 321 SSSIDDHVANLKEAAEDLQSKLDSQSYLLLNSESPER-----SFLRPQSSKEAEWTSYELLEALPLATFASLLIEFVARL 395 (406)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhCCccccCCchhhh-----hhccccccccccccchhHHHHhhHHHHHHHHHHHHHHH
Confidence 9988888999999999999999999999998764111 11111111223345778999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 041036 455 EVIVNGVNELA 465 (504)
Q Consensus 455 ~~~~~~~~el~ 465 (504)
|+|+|+|||||
T Consensus 396 ~~iv~~v~eLa 406 (406)
T PF11744_consen 396 ENIVEAVEELA 406 (406)
T ss_pred HHHHHHHHhhC
Confidence 99999999996
No 2
>KOG4711 consensus Predicted membrane protein [General function prediction only]
Probab=100.00 E-value=5.5e-66 Score=557.24 Aligned_cols=433 Identities=43% Similarity=0.719 Sum_probs=383.1
Q ss_pred hhHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHhhccChhhHHHHHHHH
Q 041036 43 GGFILKICKFLEKAWNLAVDEPKKVIHGLKVGLAISLVSLFYYMRPLYDGVGGNAMWAVMTVVVVFESSVGATLGKCINR 122 (504)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~dp~~~~~AlK~glA~~Lasll~~~~~~~~~l~~~~~WAviTvvvV~~psvG~Tl~kgl~R 122 (504)
.....|+.++.+.+|+++.+|||+++|++|+|+|++|++.++|..+.+.+++.++.||++||++|+++++|+|+.||++|
T Consensus 69 ~~~~~kv~~~~~~~~~~g~~dprrviha~KvglaltL~S~~y~~~~~~~~ig~~~~wai~tvvvv~e~svgatl~kglnr 148 (625)
T KOG4711|consen 69 LELSAKVSKIARNLWEVGKEDPRRVIHAFKVGLALTLVSFLYFMKPLYKGIGVNALWAILTVVVVFEFSVGATLSKGLNR 148 (625)
T ss_pred cchHHHHHHHHhhhhhcCCCChhhhhhhhhccchhhhhhheeeccccccccchhhhheeeEEEEEEEeccchHHHHhHHH
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCchhHHH
Q 041036 123 AIGTFLAGSLGVGVHWIAFHSGKNLEPIVLGISLFLLASAATFSRFMPTIKARFDYGIMIFILTFSLVSVSGYRVDRLLE 202 (504)
Q Consensus 123 ilGTliG~~la~~i~~l~~~~g~~~~p~~l~l~vfl~~~~~~~~~f~p~~k~~~~Ya~~if~lT~~lV~l~~~~~~~~~~ 202 (504)
.+||+.++.+|+.+.++...+|+..+++.+++.+|+.+..++|++|+|.+|+ |+|+++||++||+++.+++++.+.+++
T Consensus 149 ~v~tL~ag~l~l~~~~la~~~g~~~~~i~~~~~vF~~~~~~ty~~f~p~iK~-y~y~~lIf~ltf~l~~vs~~r~~~~~~ 227 (625)
T KOG4711|consen 149 AVGTLSAGGLALGIERLAEISGKDNESIFIGITVFIAGAKATYSLFFPYIKA-YEYGFLIFILTFCLVEVSGYRSDYFLE 227 (625)
T ss_pred HHHHhhhhhhhhhhHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhchhhhc-cchhhhHHHHHhhhheecccchhHHHH
Confidence 9999999999999999998899656888999999999999999999999998 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHH-------HHHHHhhcc-CCCchh---h-h-h
Q 041036 203 LAQQRLSTIAIGASICIIISMLFCPMWAGDELHLLICQNLEKLAHSLDE-------CVVEYFRHN-KTSTAK---D-E-A 269 (504)
Q Consensus 203 ~A~~R~~~i~IGi~iallvs~li~P~~a~~~L~~~l~~~l~~la~~l~~-------~~~~y~~~~-e~~~~~---~-~-~ 269 (504)
.|..|+.+|.+|..+|++|+.|+||.|+|++||+..+.+++.++.++++ +..+|+... +..++. . . .
T Consensus 228 ~a~~Rl~~i~~g~~vcliis~f~~PiwAgedlh~l~~~n~~~~a~sleg~~~~~~~~~~~y~~~~~i~~~s~~~~~~s~~ 307 (625)
T KOG4711|consen 228 LALQRLLLIVIGGGVCLIISRFIFPIWAGEDLHKLDSKNFKNLASSLEGRKFTASCFNGEYFCVEKIEILSIPTFYKSAA 307 (625)
T ss_pred HHHHHHHHHhhCcceeEEEEEEEeeccchhhhhhhhhhhhhhhhhhhcchhhhhhhhcchheeehhhhhcchhhhhhhcc
Confidence 9999999999999999999999999999999999999999999999996 445554432 011111 1 1 2
Q ss_pred hhHHHHHHHHHhhcHHHHHHHHhhhccCCCCC-CccccccHHHHHHHHHHHHHHHHHHHHhhhchhccCCCChhHHHHHH
Q 041036 270 CSKKMKGYRCALNSKATEELKANFARWEPAHG-RFSFRHPWKQYLKIGASIRNCAYCIETLHGCVDSETQAPPHLKRHLN 348 (504)
Q Consensus 270 ~~~~~~~yr~~L~s~~~~e~l~~~a~~EP~~g-r~~~r~p~~~Y~~l~~~lr~~a~~i~aL~~~l~~~~q~p~~~r~~~~ 348 (504)
.++.+.||+++|+++.++|++.+++.|||+|| .++++|||++|++++.++|+|++++++||+|+.+++|+|.+++..++
T Consensus 308 ~~~~~~Gy~svl~s~s~ee~l~~~A~Wep~hG~~~~f~~Pw~~Yvk~~~~~r~ca~~i~alh~~l~s~~qap~~~~~~~~ 387 (625)
T KOG4711|consen 308 WYPLYNGYWSVLQSKSQEERLANFAIWEPPHGPYFTFRHPWKNYVKLGGALRQCAFIIMALHGCLLSEIQAPRDLRNKFR 387 (625)
T ss_pred hhhhhcchhHHhhhhhHHHHHHHHheecCCCCCceeeecchhHeeehhhHHHHHHHHHHHhcccccccccCcHHHHHHHH
Confidence 46789999999999999999999999999999 66799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhcccCCCc-cCChhhHHHHHHHHHHHHhhCCccccccCCC-----------------C
Q 041036 349 NICMRLSSSSSNVLQELAFALKTMKQSSKI-NLSVGEMNFAVQELKHALISLPNHNISIKNP-----------------S 410 (504)
Q Consensus 349 ~~~~~l~~e~~~~L~~La~si~~m~~~~~~-~~~~~~~~~A~~~L~~~i~~~~~~~~~~~~~-----------------~ 410 (504)
++|.+++.++++++++++.+++.|+++++. +++...++.|.++|+..|++.|+++++++.. +
T Consensus 388 ~~l~rva~e~~kvl~~~~~~~~~~~~~s~~~~~~~~~~~~A~~~L~~~ids~p~l~v~~~~~~~~~~~~~~~~~~~~~~e 467 (625)
T KOG4711|consen 388 LTLRRVAIEISKVLRPFRAKVELMYKLSSALDILLQYVTVADRELQRNIDSNPTLLVNSESWISSNLQAARELLNEVNHE 467 (625)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHHHHHhhccCcchHhhcccchhhhhHHHHHHHhhhhccc
Confidence 999999999999999999999999999884 8888999999999999999999998876411 0
Q ss_pred CC--c---cc----------c---------C-CC---------CC----------------------C--C-----C-cc
Q 041036 411 PS--T---VE----------A---------S-GN---------CN----------------------T--E-----P-IT 426 (504)
Q Consensus 411 ~~--~---~~----------~---------~-~~---------~~----------------------~--~-----~-~~ 426 (504)
+. . .+ . . ++ .. + + | .+
T Consensus 468 ~~~~~~~~~ek~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~~~s~~~~~~~~p~~~ 547 (625)
T KOG4711|consen 468 PNLKGTFPVEKYNELIHKLLSLGILLEVGTRFGNWDDAKLKETLRRLRKDSVSSVNAVSYISSNSIRSKNPIPRVVPILS 547 (625)
T ss_pred hhhcccccchhHHHHHHHhhcchhhhhccccccchhhHHHHHhhcccccchhhhhhhhhhhhhcccccCCCCcccccccc
Confidence 00 0 00 0 0 00 00 0 0 0 11
Q ss_pred c-cccccchhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 041036 427 S-IRASSSFMEILPLATLAS-LLIENAAKIEVIVNGVNELAVLAEFKPTTDN 476 (504)
Q Consensus 427 ~-~~~~~~~~~~~~~~~~~s-ll~e~v~~~~~~~~~~~el~~~a~f~~~~~~ 476 (504)
. .+...++.+++++|+|+| +|+|+++|+++++++++||+++|+|++++..
T Consensus 548 ~~~~~~~~~se~l~~a~fas~ll~~~~arl~~vv~~~~el~~~a~f~~~~~~ 599 (625)
T KOG4711|consen 548 RATSKSYESSEALNLATFASNLLLEFVARLDNVVSAVEELSDKANFKEYDSC 599 (625)
T ss_pred ccccccccCchhcCcccccchHHHHHHHHHhhhhhhhhhhhhhhhhcccccc
Confidence 1 223456799999999999 9999999999999999999999999988755
No 3
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=99.96 E-value=9.4e-27 Score=259.49 Aligned_cols=301 Identities=15% Similarity=0.108 Sum_probs=200.4
Q ss_pred hhcccCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041036 58 NLAVDEPKKVIHGLKVGLAISLVSLFYYMRPLYDGVGGNAMWAVMTVVVVFESSVGATLGKCINRAIGTFLAGSLGVGVH 137 (504)
Q Consensus 58 ~~~~~dp~~~~~AlK~glA~~Lasll~~~~~~~~~l~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliG~~la~~i~ 137 (504)
.-...|+..++||+|++++++++.+++ .+++++ ||||+++|+++|++|++|+|..|+.+|++||++|+++|+++.
T Consensus 372 ~~l~~~S~~fRhAlRlalal~~a~~i~----~~l~l~-~gyWi~LTv~~V~qP~~~~T~~R~~~Ri~GTllG~~lg~~ll 446 (704)
T TIGR01666 372 SHFTFESPLFRHAVRLSIVLFLGYAII----QFFGFN-LGYWILLTTLFVCQPNYSATKVRLRQRIIGTLLGVVIGSPLL 446 (704)
T ss_pred HhCCCCcHHHHHHHHHHHHHHHHHHHH----HHhCCC-CCchHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456668999999999999985544 446676 999999999999999999999999999999999999999998
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHH
Q 041036 138 WIAFHSGKNLEPIVLGISLFLLASAATFSRFMPTIKARFDYGIMIFILTFSLVSVSGYRVDRLLELAQQRLSTIAIGASI 217 (504)
Q Consensus 138 ~l~~~~g~~~~p~~l~l~vfl~~~~~~~~~f~p~~k~~~~Ya~~if~lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~i 217 (504)
++. +.....+.+ +.+.+..+.+++ ..+|+..++++|..+++...... +.++++..|+++|+|||++
T Consensus 447 ~l~-----p~~~~~l~l-iv~~~~l~~~~~-------~~~Y~~a~~fiT~~vll~~~l~g-~~~~~~~~Rl~dTlIG~~i 512 (704)
T TIGR01666 447 YFN-----PSLELQLVL-VVLTGVLFFAFR-------SNNYSFATFFITLLVLLCFNVLG-EGAAVLLPRLLDTLIGCAI 512 (704)
T ss_pred HHh-----ccHHHHHHH-HHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHH
Confidence 875 212222221 111121111111 15677766667766655433322 3578899999999999999
Q ss_pred HHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhhhhhHHHHHHHHHhhcHHHHHHHHhhhccC
Q 041036 218 CIIISMLFCPMWAGDELHLLICQNLEKLAHSLDECVVEYFRHNKTSTAKDEACSKKMKGYRCALNSKATEELKANFARWE 297 (504)
Q Consensus 218 allvs~li~P~~a~~~L~~~l~~~l~~la~~l~~~~~~y~~~~e~~~~~~~~~~~~~~~yr~~L~s~~~~e~l~~~a~~E 297 (504)
|+++++++||.|.++++++.+++.++..++|++.+++.|..+..+.. ......|.+-+..+..++...-+..|
T Consensus 513 Al~a~~li~P~w~~~~l~~~~~~al~a~~~Yl~~vl~~~~~g~~~~~-------~yr~aRR~a~~~~a~l~~~~~~m~~E 585 (704)
T TIGR01666 513 AWAAVSYIWPDWQYLQLDKVSHQALRANAVYLLHIISQYQFGKSDDL-------KYRIARRNAHNYDAALSTTVSNMNNE 585 (704)
T ss_pred HHHHHHHhCcchHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCcchh-------HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999998876442110 00111121111222222222233479
Q ss_pred CCCCCccccccHHHHHHHHHHHHHHHHHHHHhhhchhccCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCC
Q 041036 298 PAHGRFSFRHPWKQYLKIGASIRNCAYCIETLHGCVDSETQAPPHLKRHLNNICMRLSSSSSNVLQELAFALKTMKQSSK 377 (504)
Q Consensus 298 P~~gr~~~r~p~~~Y~~l~~~lr~~a~~i~aL~~~l~~~~q~p~~~r~~~~~~~~~l~~e~~~~L~~La~si~~m~~~~~ 377 (504)
|++.+ ..|+..-.+....+.....+.+|..+-. ... . ..+...+++.+..+...|..++.......
T Consensus 586 P~~~~----~~~~~~~~ll~~~~~llsyisaLg~~r~-~~~-~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 651 (704)
T TIGR01666 586 PVKYK----AYLQKGFRLLKLNHSLLSYISALGAHRD-RLK-N----LQQTAQFLDGFYPVAKKLIYTLEHIEEIP---- 651 (704)
T ss_pred CCcch----hhHHHHHHHHHHHHHHHHHHHHHHhCHh-hCC-C----hHHHHHHHHHHHHHHHHHHHHhhcccccc----
Confidence 98876 3455555677778888888888876521 211 1 12333444555556666666665543211
Q ss_pred ccCChhhHHHHHHHHHHHHhhC
Q 041036 378 INLSVGEMNFAVQELKHALISL 399 (504)
Q Consensus 378 ~~~~~~~~~~A~~~L~~~i~~~ 399 (504)
+....+.+++.++|.+.++..
T Consensus 652 -~~~~~~~~~~~~~~~~~l~~~ 672 (704)
T TIGR01666 652 -EAIFNQQQESIETLELRKQEM 672 (704)
T ss_pred -cchhhhHHHHHHHHHHHHhhc
Confidence 111246777777788877653
No 4
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=99.96 E-value=1.1e-26 Score=259.59 Aligned_cols=279 Identities=17% Similarity=0.155 Sum_probs=186.3
Q ss_pred HHHhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHH
Q 041036 55 KAWNLAVDEPKKVIHGLKVGLAISLVSLFYYMRPLYDGVGGNAMWAVMTVVVVFESSVGATLGKCINRAIGTFLAGSLGV 134 (504)
Q Consensus 55 ~~~~~~~~dp~~~~~AlK~glA~~Lasll~~~~~~~~~l~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliG~~la~ 134 (504)
.+......++..++||+|++++++++.+++. +.+++ ||||+++|+++|++|++|+|..|+++|++||++|+++|+
T Consensus 371 ~l~~~l~~~S~~fRhAlR~ala~~~a~~i~~----~l~l~-~gyWi~lTv~~V~qP~~~~T~~R~~~Ri~GTl~G~llg~ 445 (701)
T TIGR01667 371 RLKSHLTPESPLFRHAVRLSLVVMLGYAILM----GTALH-LGYWILLTTLFVCQPNYGATRLRLVQRIIGTVVGLVIGV 445 (701)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH----HhCCC-cchHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444566679999999999999855543 45677 999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHH
Q 041036 135 GVHWIAFHSGKNLEPIVLGISLFLLASAATFSRFMPTIKARFDYGIMIFILTFSLVSVSGYRVDRLLELAQQRLSTIAIG 214 (504)
Q Consensus 135 ~i~~l~~~~g~~~~p~~l~l~vfl~~~~~~~~~f~p~~k~~~~Ya~~if~lT~~lV~l~~~~~~~~~~~A~~R~~~i~IG 214 (504)
++.++. +.....+.+.+ ++++++.+++ +.+|+..++++|..+++.......+.++++..|++||+||
T Consensus 446 ~l~~l~-----p~~~~~l~l~v-~~~~~~~~~~-------~~~Y~~a~~fiT~~vll~~~l~~~~~~~~a~~Rl~DTliG 512 (701)
T TIGR01667 446 ALHFLI-----PSLEGQLTLMV-ITGVAFFAFR-------SKNYGWATVFITLLVLLCFNLLGLDGEQYILPRLIDTLIG 512 (701)
T ss_pred HHHHHc-----CcHHHHHHHHH-HHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence 987765 21122222212 2222111111 2578888777786655543332324478899999999999
Q ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhhhhhHHHHHHHHHhhcHHHHHHHHhhh
Q 041036 215 ASICIIISMLFCPMWAGDELHLLICQNLEKLAHSLDECVVEYFRHNKTSTAKDEACSKKMKGYRCALNSKATEELKANFA 294 (504)
Q Consensus 215 i~iallvs~li~P~~a~~~L~~~l~~~l~~la~~l~~~~~~y~~~~e~~~~~~~~~~~~~~~yr~~L~s~~~~e~l~~~a 294 (504)
|++|+++++++||.|.+..+++.+.+.++..++|++.+++.|..+..+.. ......|.+-+..+..++...-+
T Consensus 513 ~~iA~~~~~llwP~w~~~~l~~~~~~al~a~~~yl~~il~~~~~~~~~~~-------~yr~aRr~a~~a~a~l~~~~~~m 585 (701)
T TIGR01667 513 CLIAWGAVSYLWPDWQSRLLRKMLHDALEANQRYLRLILSQYPQGKPDDL-------AYRIARRNAHNTDAALSTTLSNM 585 (701)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchh-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998865432110 00111111112222233333445
Q ss_pred ccCCCCCCccccccHHHHHHHHHHHHHHHHHHHHhhhchhccCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 041036 295 RWEPAHGRFSFRHPWKQYLKIGASIRNCAYCIETLHGCVDSETQAPPHLKRHLNNICMRLSSSSSNVLQELAFA 368 (504)
Q Consensus 295 ~~EP~~gr~~~r~p~~~Y~~l~~~lr~~a~~i~aL~~~l~~~~q~p~~~r~~~~~~~~~l~~e~~~~L~~La~s 368 (504)
..||++.+. .++....+....+.+...+.+|..+-. ... .++..+.+. +.+..+.+.|..+...
T Consensus 586 ~~EP~~~~~----~~~~~~~ll~~~~~ll~~isal~a~r~-~~~-~~~~~~~~~----~~~~~~~~~l~~~~~~ 649 (701)
T TIGR01667 586 MQEPAFNSH----YLEDGFRLLTLSHTLLSYISALGAHRE-RLL-NPELAAELL----QACEIVAKAIQRCQAR 649 (701)
T ss_pred HhCCCCchh----hHHHHHHHHHHHHHHHHHHHHHHhccc-ccC-ChhHHHHHH----HHHHHHHHHHHHHHHh
Confidence 589998763 333334566677788888888875421 111 223333343 3344445556666555
No 5
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.95 E-value=1.8e-25 Score=249.31 Aligned_cols=280 Identities=21% Similarity=0.259 Sum_probs=192.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 041036 66 KVIHGLKVGLAISLVSLFYYMRPLYDGVGGNAMWAVMTVVVVFESSVGATLGKCINRAIGTFLAGSLGVGVHWIAFHSGK 145 (504)
Q Consensus 66 ~~~~AlK~glA~~Lasll~~~~~~~~~l~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliG~~la~~i~~l~~~~g~ 145 (504)
+++|++|+++|++++ ++++.+++++ +||||++||++|+||+.|+++.||+.|++||++|+++|+++..++ .++
T Consensus 1 ~~~~alr~~lA~~lA----l~ia~~l~l~-~p~WA~~tv~iV~qp~~G~~~~k~~~R~~GT~iGa~~~~~lv~~~--~~~ 73 (650)
T PF04632_consen 1 RLRFALRTALAAMLA----LYIAFWLQLP-HPYWAAMTVFIVSQPSSGASLSKGLYRLIGTLIGAAAGLLLVALF--PQS 73 (650)
T ss_pred CHHHHHHHHHHHHHH----HHHHHHhCCC-CcHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccC
Confidence 478999998888888 5666678898 999999999999999999999999999999999999999998776 333
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041036 146 NLEPIVLGISLFLLASAATFSRFMPTIKARFDYGIMIFILTFSLVSVSGYRV-DRLLELAQQRLSTIAIGASICIIISML 224 (504)
Q Consensus 146 ~~~p~~l~l~vfl~~~~~~~~~f~p~~k~~~~Ya~~if~lT~~lV~l~~~~~-~~~~~~A~~R~~~i~IGi~iallvs~l 224 (504)
+ ..+++++++|+ ++|..+..+.. ..+.|+++++++|.++|.+++..+ ++.++++++|+.+|+||++|+++|+.+
T Consensus 74 p-~l~~~~lal~i-~~c~~~~~~~~---~~~~y~~~lag~T~~iv~~~~~~~p~~~f~~a~~R~~ei~iGi~~a~~v~~l 148 (650)
T PF04632_consen 74 P-LLFLLALALWI-GLCLYLSLLDR---NFRSYAFMLAGYTAAIVALPAVGNPEQVFDLALWRVLEILIGILCATLVSML 148 (650)
T ss_pred H-HHHHHHHHHHH-HHHHHHHHhcC---CcchHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 33333443443 22222222222 347899999999999999887544 568999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhhhhhHHHHHHHHHhhcHHHHHHHHhhhccCCCCCCcc
Q 041036 225 FCPMWAGDELHLLICQNLEKLAHSLDECVVEYFRHNKTSTAKDEACSKKMKGYRCALNSKATEELKANFARWEPAHGRFS 304 (504)
Q Consensus 225 i~P~~a~~~L~~~l~~~l~~la~~l~~~~~~y~~~~e~~~~~~~~~~~~~~~yr~~L~s~~~~e~l~~~a~~EP~~gr~~ 304 (504)
+||.+.++.+++.+.+.++..++++....+..... +. ..+.......+.+.+..++.+|.+..+.+
T Consensus 149 ~~P~~~~~~l~~~l~~~l~~~~~~~~~~l~~~~~~-----------~~---~~~~l~~~~~~l~~~~~~~~~e~~~~~~~ 214 (650)
T PF04632_consen 149 FFPQRARRQLRRRLAQRLADLARWLAALLDGDPDP-----------AA---ERRRLARDIAALESLLSHARYESPRLRRR 214 (650)
T ss_pred hCCccHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-----------ch---HHHHHHHHHHHHHHHHhhccccCchhHHH
Confidence 99999999999999999999999987654421111 01 22333444456677888888887665432
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHhhhchhccCCCChhHHHHHHHHHHHHHh-----hHHHHHHHHHHHHhhcccC
Q 041036 305 FRHPWKQYLKIGASIRNCAYCIETLHGCVDSETQAPPHLKRHLNNICMRLSS-----SSSNVLQELAFALKTMKQS 375 (504)
Q Consensus 305 ~r~p~~~Y~~l~~~lr~~a~~i~aL~~~l~~~~q~p~~~r~~~~~~~~~l~~-----e~~~~L~~La~si~~m~~~ 375 (504)
...+..+...+..+...+..++.........++.....+++.++++.. +.......+...++..++.
T Consensus 215 ----~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~la~~~~~~~~~~~~~~l~~~~~~~~~~ 286 (650)
T PF04632_consen 215 ----RRRLRALQARLLRLLALLRSLARRLAALPDAPDAARLELAALLEELAAAAQRADLDQAAAALRQRIAALRPA 286 (650)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHhhcccccccHHHHHHHHHHHhhcccc
Confidence 222333444444444444444444433222222222225555555544 3445556666666655543
No 6
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=99.94 E-value=2.7e-24 Score=237.13 Aligned_cols=219 Identities=16% Similarity=0.154 Sum_probs=169.7
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHhh---------ccChhhHHHHHHHHHHHHHHHHH
Q 041036 61 VDEPKKVIHGLKVGLAISLVSLFYYMRPLYDGVGGNAMWAVMTVVVVF---------ESSVGATLGKCINRAIGTFLAGS 131 (504)
Q Consensus 61 ~~dp~~~~~AlK~glA~~Lasll~~~~~~~~~l~~~~~WAviTvvvV~---------~psvG~Tl~kgl~RilGTliG~~ 131 (504)
..++++++|++|+++|+.++ ++++.+++++ +||||++||+||+ ||..|+++.|+++|++||++|++
T Consensus 3 ~p~~~~~~falk~~lA~~LA----L~ia~~l~L~-~P~WA~~Tv~iv~~~~~~~~g~qp~~G~v~~K~~~Ri~GTliGa~ 77 (652)
T PRK10631 3 SIANQRLRFAVKLAFAIVLA----LFVGFHFQLE-TPRWAVLTAAIVAAGPAFAAGGEPFSGAIRYRGMLRIIGTFIGCI 77 (652)
T ss_pred CCcHHHHHHHHHHHHHHHHH----HHHHHHCCCC-CccHHHHHHHHHHcccccccccCCccchHHHHHHHHHHHHHHHHH
Confidence 45677899999999998888 5666678888 9999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHH
Q 041036 132 LGVGVHWIAFHSGKNLEPIVLGISLFLLASAATFSRFMPTIKARFDYGIMIFILTFSLVSVSGYRV-DRLLELAQQRLST 210 (504)
Q Consensus 132 la~~i~~l~~~~g~~~~p~~l~l~vfl~~~~~~~~~f~p~~k~~~~Ya~~if~lT~~lV~l~~~~~-~~~~~~A~~R~~~ 210 (504)
+|+++..++ .+.| ..+++++++|+ + +++|...+ .+..+.|+++++++|.+||.++...+ ..++++|+.|+.+
T Consensus 78 ~~l~l~~~f--~~~p-~l~~l~l~lWi-g-~c~~~s~l--~r~~~sY~~~LaGyTa~iI~~~~~~~p~~~f~~A~~R~~E 150 (652)
T PRK10631 78 AALVIIIAT--IRAP-LLMILLCCIWA-G-FCTWISSL--VRVENSYAWGLAGYTALIIVITIQPEPLLTPQFAVERCSE 150 (652)
T ss_pred HHHHHHHHh--cCCh-HHHHHHHHHHH-H-HHHHHHHh--ccchhHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 999998876 3332 33333444443 2 22232211 12347899999999999999886554 5679999999999
Q ss_pred HHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhhhhhHHHHHHHHHhhcHHHHHHH
Q 041036 211 IAIGASICIIISMLFCPMWAGDELHLLICQNLEKLAHSLDECVVEYFRHNKTSTAKDEACSKKMKGYRCALNSKATEELK 290 (504)
Q Consensus 211 i~IGi~iallvs~li~P~~a~~~L~~~l~~~l~~la~~l~~~~~~y~~~~e~~~~~~~~~~~~~~~yr~~L~s~~~~e~l 290 (504)
|+||++|+.+|+.+++|.+.+..++..+.+.+.+..++++.+... .+ . +.........+......|.+
T Consensus 151 i~iGi~ca~lv~~l~~P~~~~~~l~~~l~~~~~~~~~~~~~~l~~----~~-~-------~~~~~~~~~L~~di~~le~l 218 (652)
T PRK10631 151 IVIGIVCAILADLLFSPRSIKQEVDRELDSLLVAQYQLMQLCIKH----GD-K-------EEVDKAWGDLVRRTTALNGM 218 (652)
T ss_pred HHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHhcc----Cc-c-------chhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998876432 11 0 11112233345556677888
Q ss_pred HhhhccCCCCCCc
Q 041036 291 ANFARWEPAHGRF 303 (504)
Q Consensus 291 ~~~a~~EP~~gr~ 303 (504)
.....||.++.|.
T Consensus 219 r~~~~~e~~~~r~ 231 (652)
T PRK10631 219 RSNLMMESSRWQR 231 (652)
T ss_pred HHhhccCCcchhh
Confidence 8899999877654
No 7
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.91 E-value=9.8e-22 Score=215.89 Aligned_cols=186 Identities=20% Similarity=0.157 Sum_probs=138.2
Q ss_pred HHhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHH
Q 041036 56 AWNLAVDEPKKVIHGLKVGLAISLVSLFYYMRPLYDGVGGNAMWAVMTVVVVFESSVGATLGKCINRAIGTFLAGSLGVG 135 (504)
Q Consensus 56 ~~~~~~~dp~~~~~AlK~glA~~Lasll~~~~~~~~~l~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliG~~la~~ 135 (504)
.|.-+..||..++||+|+.+|++++.+++. ..+++ ++||+++|+++|++|+.|.|.+|+++|++||++|+++|++
T Consensus 340 ~~~dA~tNp~~~R~ALRt~lAa~La~~i~~----~l~w~-~pyWamLTvvIVsqP~~GaT~sRa~~RiiGTliGallA~l 414 (683)
T PRK11427 340 MVADAFTNPDYMRYALKTLLACLICYTFYS----GVDWE-GIHTCMLTCVIVANPNVGSSYQKMVLRFGGAFCGAILALL 414 (683)
T ss_pred hhHHhccCHHHHHHHHHHHHHHHHHHHHHH----HcCCC-ccHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455788899999999999888855443 46787 8999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHHHHH
Q 041036 136 VHWIAFHSGKNLEPIVLGISLFLLASAATFSRFMPTIKARFDYGIMIFILTFSLVSVSG-YRVDRLLELAQQRLSTIAIG 214 (504)
Q Consensus 136 i~~l~~~~g~~~~p~~l~l~vfl~~~~~~~~~f~p~~k~~~~Ya~~if~lT~~lV~l~~-~~~~~~~~~A~~R~~~i~IG 214 (504)
+..+.. .+..+...+.+.++.+.++..+.. ....+++|+++.+++|+.++.+.. ..+..-...+.+|+++|++|
T Consensus 415 l~v~l~--P~l~~~~~Llllllp~~llg~wv~---~~~~R~sYa~~~ag~T~~li~L~~l~~p~~d~~~i~dRvl~tLLG 489 (683)
T PRK11427 415 FTLLVM--PWLDNIVELLFVLAPIFLLGAWIA---TSSERSSYIGTQMVVTFALATLENVFGPVYDLVEIRDRALGILIG 489 (683)
T ss_pred HHHHhc--cccccHHHHHHHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHHHhhcccCcccchHHHHHHHHHHHHH
Confidence 985541 111122112111221111111111 112457899998888988877633 22221235567899999999
Q ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHH
Q 041036 215 ASICIIISMLFCPMWAGDELHLLICQNLEKLAHSLDE 251 (504)
Q Consensus 215 i~iallvs~li~P~~a~~~L~~~l~~~l~~la~~l~~ 251 (504)
++++.+++.++||.|.++.+++.+.+.++.++++++.
T Consensus 490 i~iA~la~~lVwP~~~~~~L~~~l~~aLr~la~~l~~ 526 (683)
T PRK11427 490 TVVSAVIYTFVWPESEARTLPQKLAGALGMLSKVLRI 526 (683)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999888775
No 8
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.79 E-value=4.8e-17 Score=182.90 Aligned_cols=183 Identities=21% Similarity=0.270 Sum_probs=137.8
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHhhccC-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041036 60 AVDEPKKVIHGLKVGLAISLVSLFYYMRPLYDGVGGNAMWAVMTVVVVFESS-VGATLGKCINRAIGTFLAGSLGVGVHW 138 (504)
Q Consensus 60 ~~~dp~~~~~AlK~glA~~Lasll~~~~~~~~~l~~~~~WAviTvvvV~~ps-vG~Tl~kgl~RilGTliG~~la~~i~~ 138 (504)
.++++..++||+|+++++.++..++. +.+|+ ++||+++|+++|++|+ +|.|..++.+|++||++|+++|+++.+
T Consensus 348 ~~~~~~alr~a~R~ala~~~~~~~~~----~~~w~-~g~w~llt~~vV~~~~~~~~t~~r~~~ri~GTllg~~~g~~~l~ 422 (674)
T COG1289 348 HRLNSPALRHALRTALALLLGYAFWL----ALGWP-HGYWILLTAAVVCQPNAYGATRQRARQRILGTLLGLLLGLLVLL 422 (674)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHH----HhcCC-ccHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677789999999999999865554 46788 9999999999999999 999999999999999999999999987
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 041036 139 IAFHSGKNLEPIVLGISLFLLASAATFSRFMPTIKARFDYGIMIFILTFSLVSVSGYRVDRLLELAQQRLSTIAIGASIC 218 (504)
Q Consensus 139 l~~~~g~~~~p~~l~l~vfl~~~~~~~~~f~p~~k~~~~Ya~~if~lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~ia 218 (504)
+. ... .+..+.+.++...+++.+++ ..+|.|+ .+++|+.+.+..+....+...+...|++++++|++++
T Consensus 423 ~~--~p~--~~~~l~~l~~~~~l~~~~~~-----~~~~~~a--~~~i~l~v~~~~~l~~~~~~~~~~~r~~d~~iG~lIa 491 (674)
T COG1289 423 LL--LPL--IPGLLLLLLLAALLFAAGIR-----LAKYRLA--TLGITLLVLFLVGLLGSNGPDYDLPRFLDTLLGSLIA 491 (674)
T ss_pred Hh--ccc--chhHHHHHHHHHHHHHHHHH-----hcchhHH--HHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHH
Confidence 75 211 22111111111111111121 1224444 4444555555444344466788999999999999999
Q ss_pred HHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041036 219 IIISMLFCPMWAGDELHLLICQNLEKLAHSLDECVVEYFR 258 (504)
Q Consensus 219 llvs~li~P~~a~~~L~~~l~~~l~~la~~l~~~~~~y~~ 258 (504)
+++.+++||.|....+++...+.++...+++......+..
T Consensus 492 ~~~a~~v~~~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~~ 531 (674)
T COG1289 492 LALAFLVWPLWRPRRLRRALRRALRALRRDLASALSREPT 531 (674)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999987776544
No 9
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.72 E-value=6.9e-15 Score=162.22 Aligned_cols=172 Identities=14% Similarity=0.063 Sum_probs=130.0
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041036 61 VDEPKKVIHGLKVGLAISLVSLFYYMRPLYDGVGGNAMWAVMTVVVVFESSVGATLGKCINRAIGTFLAGSLGVGVHWIA 140 (504)
Q Consensus 61 ~~dp~~~~~AlK~glA~~Lasll~~~~~~~~~l~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliG~~la~~i~~l~ 140 (504)
...|.+.-..+|+.++++++. +.....+++ +++|+..+|++|+||..|.|..|++.|++||++|+++++++.-.+
T Consensus 24 ~~~P~r~~~~~r~~~a~~L~l----~i~~~l~~P-~~a~a~~~vfivsqp~~g~t~~kai~r~vgt~lg~~~~vll~~~~ 98 (683)
T PRK11427 24 ERRPGRVPQTLQLWVGCLLVI----LISMTFEIP-FLALSLAVLFYGIQSNAFYTKFVAILFVVATVLEIGSLFLIYKWS 98 (683)
T ss_pred cCCCChHHHHHHHHHHHHHHH----HHHHHcCCC-HHHHHHHHHHheeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666667799988888874 444456788 899999999999999999999999999999999999999997665
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHH--HhcCCCchhHHHHHHHHHHH-----HHH
Q 041036 141 FHSGKNLEPIVLGISLFLLASAATFSRFMPTIKARFDYGIMIFILTFSLV--SVSGYRVDRLLELAQQRLST-----IAI 213 (504)
Q Consensus 141 ~~~g~~~~p~~l~l~vfl~~~~~~~~~f~p~~k~~~~Ya~~if~lT~~lV--~l~~~~~~~~~~~A~~R~~~-----i~I 213 (504)
.+ .|.+..+++-++.+++.|+- -.+|.+|.+++..+|. ++ .+.+..+ ..-+..|..+ |.+
T Consensus 99 --v~---~P~l~~l~ialw~~~~lyl~----r~~rl~yvf~lag~ta-ii~~~f~~v~~---~~E~~~R~~e~~w~~i~~ 165 (683)
T PRK11427 99 --YG---YPLIRLIIAGPILMGCMFLM----RTHRLGLVFFAVAIVA-IYGQTFPAMLD---YPEVVVRLTLWCIVVGLY 165 (683)
T ss_pred --cc---chHHHHHHHHHHHHHHHHHh----hccchhHHHHHHHHHH-HHHhhcccccc---hHHHHHHHHHHHHHHHHH
Confidence 33 45544333333223333332 2345799999999994 55 3344333 1223889999 999
Q ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHH
Q 041036 214 GASICIIISMLFCPMWAGDELHLLICQNLEKLAHSLD 250 (504)
Q Consensus 214 Gi~iallvs~li~P~~a~~~L~~~l~~~l~~la~~l~ 250 (504)
|++|+.+||.++||...+..++..+.+.+++.++++.
T Consensus 166 gi~ca~lV~~l~~P~~~~~~l~~~l~~~l~~a~~~l~ 202 (683)
T PRK11427 166 PTLLMTLIGVLWFPSRAINQMHQALNDRLDDAISHLT 202 (683)
T ss_pred HHHHHHHHHhHhCcCChHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998887766644
No 10
>COG4129 Predicted membrane protein [Function unknown]
Probab=99.70 E-value=2.3e-14 Score=147.20 Aligned_cols=161 Identities=21% Similarity=0.347 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 041036 68 IHGLKVGLAISLVSLFYYMRPLYDGVGGNAMWAVMTVVVVFESSVGATLGKCINRAIGTFLAGSLGVGVHWIAFHSGKNL 147 (504)
Q Consensus 68 ~~AlK~glA~~Lasll~~~~~~~~~l~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliG~~la~~i~~l~~~~g~~~ 147 (504)
...+|+|+|++++.+++ .+++++ .+..|+||++++++||...++.++++|++|+++|+++|.++..++ |.
T Consensus 11 ~RtlKt~ia~~La~~ia----~~l~~~-~~~~A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~---g~-- 80 (332)
T COG4129 11 ARTLKTGLAAGLALLIA----HLLGLP-QPAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLLF---GQ-- 80 (332)
T ss_pred HHHHHHHHHHHHHHHHH----HHhCCC-chHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHc---Cc--
Confidence 45799999999995544 457777 789999999999999999999999999999999999999998875 54
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 041036 148 EPIVLGISLFLLASAATFSRFMPTIKARFDYGIMIFILTFSLVSVSGYRVDRLLELAQQRLSTIAIGASICIIISMLFCP 227 (504)
Q Consensus 148 ~p~~l~l~vfl~~~~~~~~~f~p~~k~~~~Ya~~if~lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~iallvs~li~P 227 (504)
+|+.+++.+.++..++..++ ..-|.....++...+++. ...+.++... |++++++|+++|+++|.++.|
T Consensus 81 ~~~~~~v~~~i~i~~~~~~~--------~~~g~~~~~~~~~~ii~~-~~~~~~~~~~--r~l~~~vG~~~a~lvn~~~~~ 149 (332)
T COG4129 81 NPIAFGVVLLIIIPLLVLLK--------LENGVVPITVGVLHILVA-AMIPLFLIFN--RFLLVFVGVGVAFLVNLVMPP 149 (332)
T ss_pred cHHHHHHHHHHHHHHHHHHh--------cccchhHHHHHHHHHHHH-cccchhHHHH--HHHHHHHHHHHHHHHhhhcCC
Confidence 67777766665444444443 223332222222222222 2233333333 999999999999999999988
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHH
Q 041036 228 MWAGDELHLLICQNLEKLAHSLDE 251 (504)
Q Consensus 228 ~~a~~~L~~~l~~~l~~la~~l~~ 251 (504)
+. .+++....+.....+..+..
T Consensus 150 ~~--~~~~~~~~kv~~~~~~il~~ 171 (332)
T COG4129 150 PD--YELKLYRAKVEAILASILWE 171 (332)
T ss_pred ch--HHHHHHHHHHHHHHHHHHHH
Confidence 87 44444444444444444443
No 11
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=99.65 E-value=1.9e-15 Score=134.04 Aligned_cols=118 Identities=27% Similarity=0.410 Sum_probs=89.7
Q ss_pred hcCCCCCchHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhhh
Q 041036 90 YDGVGGNAMWAVMTVVVVFESSVGATLGKCINRAIGTFLAGSLGVGVHWIAFHSGKNLEPIVLGISLFLLASAATFSRFM 169 (504)
Q Consensus 90 ~~~l~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliG~~la~~i~~l~~~~g~~~~p~~l~l~vfl~~~~~~~~~f~ 169 (504)
+.+.+ |++|+++|++++++|+.|++..|+.+|++||++|+++|+++..+. + .+ +.+.+.+++..++..+.+
T Consensus 8 ~~~~~-~~~W~~it~~~v~~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~~~---~--~~-~~~~~~~~~~~~~~~~~~-- 78 (128)
T PF13515_consen 8 WLGLP-HGYWAPITVVSVLSPSYGATVNRAIQRILGTLIGVVLGLLLLYLF---P--GN-YVLILIVFLLMFLIFYFL-- 78 (128)
T ss_pred HHcCC-chHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---C--CH-HHHHHHHHHHHHHHHHHH--
Confidence 34556 999999999999999999999999999999999999999998775 2 22 333333333333332322
Q ss_pred hccccchhHHHHHHHHHHHHHHhcCCC---chhHHHHHHHHHHHHHHHHHHHHHH
Q 041036 170 PTIKARFDYGIMIFILTFSLVSVSGYR---VDRLLELAQQRLSTIAIGASICIII 221 (504)
Q Consensus 170 p~~k~~~~Ya~~if~lT~~lV~l~~~~---~~~~~~~A~~R~~~i~IGi~iallv 221 (504)
.++|+...+++|+.++++..+. ..+.++.+..|+.++++|+++++++
T Consensus 79 -----~~~y~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~R~~~v~iG~~i~~~v 128 (128)
T PF13515_consen 79 -----SKNYAIAQIFITVMVVLLFSLIHPGNGDPWQLALERILDVLIGILIALLV 128 (128)
T ss_pred -----hccHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHhC
Confidence 2567777777888887776642 4566889999999999999999874
No 12
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=99.60 E-value=3.1e-14 Score=129.92 Aligned_cols=136 Identities=21% Similarity=0.408 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch
Q 041036 69 HGLKVGLAISLVSLFYYMRPLYDGVGGNAMWAVMTVVVVFESSVGATLGKCINRAIGTFLAGSLGVGVHWIAFHSGKNLE 148 (504)
Q Consensus 69 ~AlK~glA~~Lasll~~~~~~~~~l~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliG~~la~~i~~l~~~~g~~~~ 148 (504)
..+|+++|++++..++ .+++.+ ++++|.+++++++|||...|++.+++|+.|+++|+++|+++..+. |. +
T Consensus 6 r~iKtaiA~~la~~ia----~~l~~~-~~~~A~i~Ail~~q~T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~---g~--~ 75 (141)
T PF06081_consen 6 RTIKTAIAAFLAILIA----QLLGLQ-YPFFAPIAAILSMQPTVYRSLKQGLNRILGTLIGALLALLFFLIL---GY--N 75 (141)
T ss_pred HHHHHHHHHHHHHHHH----HHHCCC-chHHHHHHHhheeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Cc--c
Confidence 4589999999995444 445666 899999999999999999999999999999999999999998775 43 6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041036 149 PIVLGISLFLLASAATFSRFMPTIKARFDYGIMIFILTFSLVSVSGYRVDRLLELAQQRLSTIAIGASICIIISMLF 225 (504)
Q Consensus 149 p~~l~l~vfl~~~~~~~~~f~p~~k~~~~Ya~~if~lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~iallvs~li 225 (504)
|+.+++.+++.......++ .+-+.....+++..++.. ..++ +..+..|+.++++|++++++||+++
T Consensus 76 ~~~~~l~v~i~i~~~~~l~--------~~~~~~~a~v~~~~i~~~--~~~~-~~~~~~r~l~t~iG~~va~lVN~~~ 141 (141)
T PF06081_consen 76 PLSIGLAVIITIPICNWLK--------LGEGIIVAAVTFVHILLS--GSDS-FSYALNRVLLTLIGIGVALLVNLLM 141 (141)
T ss_pred HHHHHHHHHHHHHHHHHhC--------CCCeehHHHHHHHHHHHc--CCcc-HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7777765554332332322 233333444454444433 2333 3449999999999999999999864
No 13
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.59 E-value=4.2e-13 Score=151.12 Aligned_cols=165 Identities=21% Similarity=0.249 Sum_probs=126.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041036 64 PKKVIHGLKVGLAISLVSLFYYMRPLYDGVGGNAMWAVMTVVVVFESSVGATLGKCINRAIGTFLAGSLGVGVHWIAFHS 143 (504)
Q Consensus 64 p~~~~~AlK~glA~~Lasll~~~~~~~~~l~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliG~~la~~i~~l~~~~ 143 (504)
...++|++|+.+|+.++..++| +.+.+ +++|+++|+++|++|..|+.+.|++.|++||++|..++.++..+. .
T Consensus 8 ~~~~~~~lr~~~a~~la~~~~~----~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~rli~tlig~~~~~~~~~~~--~ 80 (674)
T COG1289 8 NADWRYALRTFLAACLALALAF----LLGLP-QPSWAVSTVAIVSAPDSGAVLSKGLKRLIGTLIGFAVALLLVALL--A 80 (674)
T ss_pred chhHHHHHHHHHHHHHHHHHHH----HcCCC-CccHHHHHHHHHhCcCCCCHHHhhHHHHHHHHHHHHHHHHHHHHH--c
Confidence 3469999999999998855554 56677 899999999999999999999999999999999999999998766 5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcC--CCc-hhHHHHHHHHHHHHHHHHHHHHH
Q 041036 144 GKNLEPIVLGISLFLLASAATFSRFMPTIKARFDYGIMIFILTFSLVSVSG--YRV-DRLLELAQQRLSTIAIGASICII 220 (504)
Q Consensus 144 g~~~~p~~l~l~vfl~~~~~~~~~f~p~~k~~~~Ya~~if~lT~~lV~l~~--~~~-~~~~~~A~~R~~~i~IGi~iall 220 (504)
+++ .++++++++++ +++..+...+..+ ..|++.++++|+.++. +. ... ...+..++.|+.++++|+.|+-.
T Consensus 81 ~~p-~~f~~~~~~~~-~l~~~~~~~~~~~---~~~a~~la~yT~~~~~-~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~ 154 (674)
T COG1289 81 QEP-WLFLLLLTLWL-GLCTAIGSLYRTI---ASYAFVLAGYTALIIG-PAPAIPEPELLFDGAVWRVVEILLGILCAPV 154 (674)
T ss_pred cCc-HHHHHHHHHHH-HHHHHHHHhhccH---HHHHHHHHHHHHHHhc-cccccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 543 55554444443 4444455444433 6899999999999887 32 222 23689999999999999999999
Q ss_pred HHhhcccccchHHHHHHHHHH
Q 041036 221 ISMLFCPMWAGDELHLLICQN 241 (504)
Q Consensus 221 vs~li~P~~a~~~L~~~l~~~ 241 (504)
+....+|...+..|...+...
T Consensus 155 ~~~~~~~~~~~~~L~~~l~~~ 175 (674)
T COG1289 155 VPLLESPSRLYQALANYLEAK 175 (674)
T ss_pred chHhhhHHHHHHHHHHHHHHH
Confidence 988877776665554444433
No 14
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=99.28 E-value=1.4e-08 Score=109.69 Aligned_cols=264 Identities=19% Similarity=0.237 Sum_probs=160.0
Q ss_pred HhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHhh-ccChhhHHHHHHHHHHHHHHHHHHHHH
Q 041036 57 WNLAVDEPKKVIHGLKVGLAISLVSLFYYMRPLYDGVGGNAMWAVMTVVVVF-ESSVGATLGKCINRAIGTFLAGSLGVG 135 (504)
Q Consensus 57 ~~~~~~dp~~~~~AlK~glA~~Lasll~~~~~~~~~l~~~~~WAviTvvvV~-~psvG~Tl~kgl~RilGTliG~~la~~ 135 (504)
|..-.-|.+.++.-+|..++..++.++++..+....+++.+|.++|..+++. .-.+|..+...+.=++|+++|.+.+++
T Consensus 6 W~~~~ld~~~~k~~~k~~i~~~i~~~l~~i~~~~~~~g~~~yl~~i~~~~~~p~~~~~~~~~~~~~~~~g~~~g~~~~~l 85 (459)
T PF10337_consen 6 WLLDHLDRRSLKIMFKCWIAPWIALILCQIPPVARWLGTAGYLAPIISVIVPPGRPRGKFLEAMILLLLGVCLGWAWGLL 85 (459)
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHhcchhHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4434457788999999999999999998887776667778999888876653 346888888888889999999988888
Q ss_pred HHHHHhhcC-C-----------------Cc-hH-------------------HHHHHHHHHHHHHHHHHhhhhccccchh
Q 041036 136 VHWIAFHSG-K-----------------NL-EP-------------------IVLGISLFLLASAATFSRFMPTIKARFD 177 (504)
Q Consensus 136 i~~l~~~~g-~-----------------~~-~p-------------------~~l~l~vfl~~~~~~~~~f~p~~k~~~~ 177 (504)
..+++...- + .+ ++ .+.++.+|+..++..++|. -.+++.
T Consensus 86 ~~~~a~~aR~~~t~a~l~~~~~~~~~~~s~~~~~~~~~~~i~~G~~~~a~~saV~av~l~~~i~~~~~lRa---~~p~~~ 162 (459)
T PF10337_consen 86 AMYIAVAARPHDTQARLQQLQQSAGACTSGPNPAACAQQLIFDGFFYDARASAVFAVFLFVFIYFHGWLRA---KNPKLN 162 (459)
T ss_pred HHHHHHHHccCccHHHHHHHHHHhccccCCCChhHHHHHhhcccceecchHHHHHHHHHHHHHHHHHHHHH---hCcchH
Confidence 887764432 1 00 11 2223333333333344442 123333
Q ss_pred HHHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 041036 178 YGIMIFILTFSLVSVSGYRVD--RLLELAQQRLSTIAIGASICIIISMLFCPMWAGDELHLLICQNLEKLAHSLDECVVE 255 (504)
Q Consensus 178 Ya~~if~lT~~lV~l~~~~~~--~~~~~A~~R~~~i~IGi~iallvs~li~P~~a~~~L~~~l~~~l~~la~~l~~~~~~ 255 (504)
.+..++++..++.+.++...+ ....++..=+.-.++|+++++++|++|||...+..+.+.+.+.+..+...++... .
T Consensus 163 ~~~I~~~I~~~i~~t~g~~~p~~~~~~l~~~ll~P~~ig~ai~~~vslliFP~sss~~~~~~~~~~l~~l~~~l~~~~-~ 241 (459)
T PF10337_consen 163 FPVIFGSIFVDIFLTYGPLFPTFFAYTLGKTLLKPFLIGIAIALVVSLLIFPESSSHVVLKSMEDYLRLLKKALDAQR-N 241 (459)
T ss_pred HHHHHHHHHHHHHHHhCcCcCcchHHHHHHHHHHHHHHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 333333333333334432222 2345555555688999999999999999999999999999999999998888644 4
Q ss_pred HhhccCCCchhh-hhhhHHHHHHHHHhhc-HHHHHHHHhhhccCCCCCCccccccHHHHHHHHHHHHHHHHHHHHh
Q 041036 256 YFRHNKTSTAKD-EACSKKMKGYRCALNS-KATEELKANFARWEPAHGRFSFRHPWKQYLKIGASIRNCAYCIETL 329 (504)
Q Consensus 256 y~~~~e~~~~~~-~~~~~~~~~yr~~L~s-~~~~e~l~~~a~~EP~~gr~~~r~p~~~Y~~l~~~lr~~a~~i~aL 329 (504)
|+...+...... ... +..+..+..+.+ ....+....+++.|-..|++. -+.|..+...+|+....+..|
T Consensus 242 ~l~~~~~~~~~~~~~~-~~L~~~~~~l~~~~~~l~~~l~~~~~Eis~grl~----~~Dl~~i~~~lr~l~~~~~gL 312 (459)
T PF10337_consen 242 FLQSSEPSDEFDAKSL-KKLKATKAKLRALYAKLQAALRFLKLEISYGRLS----PDDLKPIFSLLRSLMIPLSGL 312 (459)
T ss_pred HHhCCCCCCccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHeeecCC----HHHHHHHHHHHHHHHHHHHHH
Confidence 665443211100 000 111222211211 123344556677777777643 344555555555554443333
No 15
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.26 E-value=1.3e-08 Score=113.95 Aligned_cols=175 Identities=21% Similarity=0.180 Sum_probs=126.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHhh--ccChhhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 041036 64 PKKVIHGLKVGLAISLVSLFYYMRPLYDGVGGNAMWAVMTVVVVF--ESSVGATLGKCINRAIGTFLAGSLGVGVHWIA- 140 (504)
Q Consensus 64 p~~~~~AlK~glA~~Lasll~~~~~~~~~l~~~~~WAviTvvvV~--~psvG~Tl~kgl~RilGTliG~~la~~i~~l~- 140 (504)
+..+++++|+++++.+++++.+. .+|+ .+.-+++++.|+. -.+.+....+...++.|+++|+++|+++.++.
T Consensus 337 ~~A~~~alra~la~~~~~l~Wi~----t~W~-~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vl 411 (650)
T PF04632_consen 337 PLALRNALRAFLAILIAGLFWIA----TGWP-SGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFFVL 411 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----cCCC-hhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44678899999999888877654 5687 6777777777665 77888999999999999999999999887644
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 041036 141 FHSGKNLEPIVLGISLFLLASAATFSRFMPTIKARFDYGIMIFILTFSLVSVSGYRVDRLLELAQQRLSTIAIGASICII 220 (504)
Q Consensus 141 ~~~g~~~~p~~l~l~vfl~~~~~~~~~f~p~~k~~~~Ya~~if~lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~iall 220 (504)
++..+ ...+.+.++++++ ...+.. .++++.|.++.+++.|.+.+..+.....-+....++.+.+++|++++.+
T Consensus 412 P~~~~-f~~L~l~l~~~l~--~~~~~~----~~p~~~~~g~~~~v~f~~~~~~~n~~~~d~~~f~n~~la~l~G~~~a~l 484 (650)
T PF04632_consen 412 PHLDG-FPLLALVLAPFLF--LGGLLM----ARPRTAYIGLGFAVFFLLLLGPGNPYSYDFATFLNRALAILLGIVIAAL 484 (650)
T ss_pred hccCc-HHHHHHHHHHHHH--HHHHHH----cCchHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 22211 2222232333322 222221 2566777777666676666555544433367789999999999999999
Q ss_pred HHhhcccccchHHHHHHHHHHHHHHHHHHH
Q 041036 221 ISMLFCPMWAGDELHLLICQNLEKLAHSLD 250 (504)
Q Consensus 221 vs~li~P~~a~~~L~~~l~~~l~~la~~l~ 250 (504)
+..+++|.......++.+....+++++...
T Consensus 485 ~~~li~p~~~~~~~rrl~~~~~~~l~~~~~ 514 (650)
T PF04632_consen 485 VFRLIRPFSPEWRRRRLLRALRRDLARLAR 514 (650)
T ss_pred HHHHHCCCChhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999988888888775543
No 16
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=98.91 E-value=1.1e-06 Score=89.11 Aligned_cols=177 Identities=14% Similarity=0.174 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCchhhhhhhHHHHHHHHHh
Q 041036 203 LAQQRLSTIAIGASICIIISMLFCPMWAGDELHLLICQNLEKLAHSLDECVVEYFRHNK-TSTAKDEACSKKMKGYRCAL 281 (504)
Q Consensus 203 ~A~~R~~~i~IGi~iallvs~li~P~~a~~~L~~~l~~~l~~la~~l~~~~~~y~~~~e-~~~~~~~~~~~~~~~yr~~L 281 (504)
.++.+...+++|+++.+++++++||.+..+-.++.+++.+..+|+|++.-. .+++..+ +..+. ...+... .+..+
T Consensus 70 ~~~~~~~l~~~Gglwy~~lsl~~~~l~p~r~~rqaLa~~y~~lA~yl~~ka-~~~~p~~~~~~~~--~~~~l~~-~q~~v 145 (284)
T PF12805_consen 70 EALEHALLFLAGGLWYLLLSLLWWPLRPYRPVRQALAECYRALADYLRAKA-RFFDPDQHDDDEQ--LRIELAQ-QQIKV 145 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH-hcCCCCCccchhH--HHHHHHH-HHHHH
Confidence 678888999999999999999999999999999999999999999999633 3342211 11110 0000111 11112
Q ss_pred hc-HH-HHHHHHhhhccCCCCCCccccccHHHHHHHHHHHHHHHHHHHHhhhchhccCCCChhHHHH-----HHHHHHHH
Q 041036 282 NS-KA-TEELKANFARWEPAHGRFSFRHPWKQYLKIGASIRNCAYCIETLHGCVDSETQAPPHLKRH-----LNNICMRL 354 (504)
Q Consensus 282 ~s-~~-~~e~l~~~a~~EP~~gr~~~r~p~~~Y~~l~~~lr~~a~~i~aL~~~l~~~~q~p~~~r~~-----~~~~~~~l 354 (504)
.. .+ ..+.+.. +..+.++... +. ..++ ++-....++-.....-++.. .+.+++. +...++++
T Consensus 146 ~~~~~~~R~~l~~--~r~~~~~~~~---~~--~~~l---l~~~~~a~Dl~E~~~as~~~-y~~l~~~f~~~~~l~~~~~~ 214 (284)
T PF12805_consen 146 NEALEQARELLLR--RRRSGRGKPS---TY--GRRL---LLLFFEAVDLFERALASHYD-YEELREQFKHSDVLFRFQRL 214 (284)
T ss_pred HHHHHHHHHHHHH--hhcccCCCCC---cH--HHHH---HHHHHHHHHHHHHHHhcccc-HHHHHHHhcCChHHHHHHHH
Confidence 11 11 1122211 1122222111 11 0111 11111112211111111111 2233332 34567788
Q ss_pred HhhHHHHHHHHHHHHhhcccCCCccCChhhHHHHHHHHHHHHhh
Q 041036 355 SSSSSNVLQELAFALKTMKQSSKINLSVGEMNFAVQELKHALIS 398 (504)
Q Consensus 355 ~~e~~~~L~~La~si~~m~~~~~~~~~~~~~~~A~~~L~~~i~~ 398 (504)
-.+.+..++.++.++...++... ..+++.+.++++..++.
T Consensus 215 l~~~a~~l~~ia~ai~~~~~~~~----~~~l~~~l~~l~~~l~~ 254 (284)
T PF12805_consen 215 LEQLAQALRQIAQAILRGRPYHH----RNRLKRALEALEESLEF 254 (284)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCC----chHHHHHHHHHHHHHHH
Confidence 88888899999999997666553 25788888888888764
No 17
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=98.77 E-value=7.2e-06 Score=92.92 Aligned_cols=295 Identities=14% Similarity=0.111 Sum_probs=154.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 041036 66 KVIHGLKVGLAISLVSLFYYMRPLYDGVGGNAMWAVMTVVVVFESSVGATLGKCINRAIGTFLAGSLGVGVHWIAFHSGK 145 (504)
Q Consensus 66 ~~~~AlK~glA~~Lasll~~~~~~~~~l~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliG~~la~~i~~l~~~~g~ 145 (504)
.+.+++|+.+|+..+.++.++ ++....++=+.+.++..--.+..+.+..=+.+++-|++...++.+...+. .+.
T Consensus 7 ~~~~~l~v~ia~~~~~~~~~~----~g~~~~~i~l~lG~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll--~~~ 80 (701)
T TIGR01667 7 KLVYCLPVFIALMGAELRIWW----FGLLFLLIPLCLGIIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLL--FPK 80 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hCCccHHHHHHHhhHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH--hcc
Confidence 588999999999888655443 33333444555555555555666777777777777777777776666654 333
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhccccchh---HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 041036 146 NLEPIVLGISLFLLASAATFSRFMPTIKARFD---YGIMIFILTFSLVSVSGYRVDRLLELAQQRLSTIAIGASICIIIS 222 (504)
Q Consensus 146 ~~~p~~l~l~vfl~~~~~~~~~f~p~~k~~~~---Ya~~if~lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~iallvs 222 (504)
|+++.+.+++.+++++++. .+.++|. +|. +.+..|+++ +..... ....--..+++|.++-.+++
T Consensus 81 ---p~~~~~~l~~~tf~~~mlg---a~G~r~~~I~f~~-L~~aiytml---~~~~~~---~w~~~pllll~GalwY~l~s 147 (701)
T TIGR01667 81 ---PWLFPFLLTLLTFGFILLG---ALGQRYATIAFAS-LLAAIYTML---GAGEVP---VWFIEPLLILAGTLWYGLLT 147 (701)
T ss_pred ---hHHHHHHHHHHHHHHHHHH---HhhhhHHhHHHHH-HHHHHHHHc---Cccccc---HHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333322 1223332 221 222222222 222222 22235567888999999999
Q ss_pred hhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhhhhhHHHHHHHHHhhcHHH-HHHHHhhhccCCCCC
Q 041036 223 MLFCPMWAGDELHLLICQNLEKLAHSLDECVVEYFRHNKTSTAKDEACSKKMKGYRCALNSKAT-EELKANFARWEPAHG 301 (504)
Q Consensus 223 ~li~P~~a~~~L~~~l~~~l~~la~~l~~~~~~y~~~~e~~~~~~~~~~~~~~~yr~~L~s~~~-~e~l~~~a~~EP~~g 301 (504)
++.+..|..+-+++.+++.++.+++|++. -..+++..+. ++.++...+....-..+.+..++ .+.+.. +. +.+
T Consensus 148 ll~~~l~p~rp~q~~La~~y~~La~yL~a-Ka~lf~p~~~-~~~~~~~~~l~~~n~~lv~~ln~~~~~ll~--r~--~~~ 221 (701)
T TIGR01667 148 LIWFLLFPNQPLQESLSRLYRELAEYLEA-KSSLFDPDQH-TDPEKALLPLAVRNGKVVDALNQCKQQLLM--RL--RGN 221 (701)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHhCCCCCCC-CChhHhHHHHHHHHHHHHHHHHHHHHHHHH--Hh--cCC
Confidence 99999999999999999999999999984 3334543211 11110000011100011222211 122221 11 111
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHHHhhhchhccCCCChhHHHHHHHH-----HHHHHhhHHHHHHHHHHHHhhcccCC
Q 041036 302 RFSFRHPWKQYLKIGASIRNCAYCIETLHGCVDSETQAPPHLKRHLNNI-----CMRLSSSSSNVLQELAFALKTMKQSS 376 (504)
Q Consensus 302 r~~~r~p~~~Y~~l~~~lr~~a~~i~aL~~~l~~~~q~p~~~r~~~~~~-----~~~l~~e~~~~L~~La~si~~m~~~~ 376 (504)
+ +.+. ..++ ++ ..+...-+|....+...-.+++++.|.+. ++++-...++.+++++.++...++..
T Consensus 222 ~---~~~~--~~rl---l~-~y~~A~di~E~a~ss~~~Y~~L~~~f~~sd~l~~~~~ll~~~a~a~~~la~ai~~~~~~~ 292 (701)
T TIGR01667 222 R---TDPL--TKRM---LR-YYFEAQDIHERASSSHHQYQELQELFEHSDVLFRIQRLLQTQAQACQVLARDILLRQPYY 292 (701)
T ss_pred C---CCch--HHHH---HH-HHHHHHHHHHHHHhccCCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 1 1110 0111 11 11111222222222222245566666655 88888888999999999999755443
Q ss_pred CccCChhhHHHHHHHHHHHHhh
Q 041036 377 KINLSVGEMNFAVQELKHALIS 398 (504)
Q Consensus 377 ~~~~~~~~~~~A~~~L~~~i~~ 398 (504)
. .++.+.+.+.++..+..
T Consensus 293 ~----~~~~~~~~~~l~~sl~~ 310 (701)
T TIGR01667 293 H----RLRTERALEKQIAALEK 310 (701)
T ss_pred C----CchHHHHHHHHHHHHHH
Confidence 2 24566777777666653
No 18
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=98.76 E-value=1.1e-05 Score=91.33 Aligned_cols=175 Identities=13% Similarity=0.164 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 041036 66 KVIHGLKVGLAISLVSLFYYMRPLYDGVGGNAMWAVMTVVVVFESSVGATLGKCINRAIGTFLAGSLGVGVHWIAFHSGK 145 (504)
Q Consensus 66 ~~~~AlK~glA~~Lasll~~~~~~~~~l~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliG~~la~~i~~l~~~~g~ 145 (504)
.+.+++|+.+|+..+.++.++ ++..+-++=+.+.++...-.+..+.+..=+.+++-|++...++.+...+. .+.
T Consensus 7 ~~~~~lri~ia~~~~~~~~~~----~~~~~~~~~l~LG~ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll--~~~ 80 (704)
T TIGR01666 7 KVIYTIPIFIALNGAAVGIWF----FDISSQSMPLILGIIAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELL--FGK 80 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hCchhHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--hcC
Confidence 689999999999888665544 22222344455666666666777788888888888888888887777665 343
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHH--HHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 041036 146 NLEPIVLGISLFLLASAATFSRFMPTIKARFDYGIMIFILTFSL--VSVSGYRVDRLLELAQQRLSTIAIGASICIIISM 223 (504)
Q Consensus 146 ~~~p~~l~l~vfl~~~~~~~~~f~p~~k~~~~Ya~~if~lT~~l--V~l~~~~~~~~~~~A~~R~~~i~IGi~iallvs~ 223 (504)
|+++.+.+++.+++++++- .+.+| |+. +.+.|..+ ..+.+...+ ...+..-+.+++|.++..++++
T Consensus 81 ---p~lf~~~l~~~tf~~~mlg---a~G~R--ya~-Iaf~tLliaiytmlg~~~~---~~w~~~pllll~GalwY~llsl 148 (704)
T TIGR01666 81 ---PWLFAVGLTVSTFGFIMLG---AVGQR--YAT-IAFGSLLVALYTMLGYIEV---NVWFIQPVMLLCGTLWYSVVTL 148 (704)
T ss_pred ---cHHHHHHHHHHHHHHHHHH---Hhhhh--HHH-HHHHHHHHHHHHHhccccc---chHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333322 12222 332 22222211 111122111 1234477889999999999999
Q ss_pred hcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041036 224 LFCPMWAGDELHLLICQNLEKLAHSLDECVVEYFRH 259 (504)
Q Consensus 224 li~P~~a~~~L~~~l~~~l~~la~~l~~~~~~y~~~ 259 (504)
+.|+.|..+-+++.+++.++.+++|++.-. .+++.
T Consensus 149 ~~~~l~p~rp~q~~LA~~y~~La~yL~aka-~lf~p 183 (704)
T TIGR01666 149 IVHLFFPNRPVQENLAKAFCQLAEYLETKS-CFFDP 183 (704)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHHHHH-hhCCC
Confidence 999999999999999999999999998533 34543
No 19
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=98.75 E-value=2.2e-06 Score=84.50 Aligned_cols=216 Identities=16% Similarity=0.090 Sum_probs=129.2
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCchhhhhhhHHHHHHHHHhhcHHHHHHHHhhhccCCCCCC
Q 041036 225 FCPMWAGDELHLLICQNLEKLAHSLDECVVEYFRHNK--TSTAKDEACSKKMKGYRCALNSKATEELKANFARWEPAHGR 302 (504)
Q Consensus 225 i~P~~a~~~L~~~l~~~l~~la~~l~~~~~~y~~~~e--~~~~~~~~~~~~~~~yr~~L~s~~~~e~l~~~a~~EP~~gr 302 (504)
.+|.+++..+|+.+++.+..+++++..++..+....+ +.+. ....+.....+..+....+..+.+..+++|||+-++
T Consensus 1 P~P~Sar~~vRk~La~~l~~l~~~Y~~v~s~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~l~~~k~Ep~l~G 79 (229)
T PF10334_consen 1 PRPPSARRHVRKTLASTLSELGDLYSLVVSFWSRRLDNPDGHI-DAEEDAIRKRFLKLQQSLNSLRTLLAFAKFEPSLKG 79 (229)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCC
Confidence 4799999999999999999999999988887766431 1111 111122333344444555667788999999999433
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHhhhchhccCCCChhHHHHHH----HHHHHHHhhHHHHHHHHHHHHhhcccCCCc
Q 041036 303 FSFRHPWKQYLKIGASIRNCAYCIETLHGCVDSETQAPPHLKRHLN----NICMRLSSSSSNVLQELAFALKTMKQSSKI 378 (504)
Q Consensus 303 ~~~r~p~~~Y~~l~~~lr~~a~~i~aL~~~l~~~~q~p~~~r~~~~----~~~~~l~~e~~~~L~~La~si~~m~~~~~~ 378 (504)
+||-+.|.++...+.+....+..|..... ... |.+.+..+. ..-..+..++-.+|..+++++++..+.|+.
T Consensus 80 ---~FP~~~Y~~l~~~~~~il~~l~~l~~~~~-~l~-~~~~~~~l~~~~~~~~~~~~~~i~~vl~~ls~al~~g~pLP~~ 154 (229)
T PF10334_consen 80 ---RFPKETYQRLLELCQNILDLLSLLSYVST-RLE-PSEWRERLLRRTGWLRPELIGDIFSVLYMLSSALRTGQPLPPY 154 (229)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-Hcc-hhhHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 68999999997776666655555543332 222 555554443 344556677778999999999998887653
Q ss_pred cCChhhHHHHHHHHHHHHhhCCccccccCCCCCCccccCCCCCCCCc--cccccccchhhhhhHHHHHHHHHHHHHHHHH
Q 041036 379 NLSVGEMNFAVQELKHALISLPNHNISIKNPSPSTVEASGNCNTEPI--TSIRASSSFMEILPLATLASLLIENAAKIEV 456 (504)
Q Consensus 379 ~~~~~~~~~A~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~sll~e~v~~~~~ 456 (504)
-+- +=++...+.+........ ..+ .... ..+.. ... .+ -+-.-..+-.+....|+.++++
T Consensus 155 lp~-pl~~r~~~~~~~~~~~~~----~~~-~~~~--------~~~~l~~~~l-~~---~~y~~~~v~~~~~~~i~~~lD~ 216 (229)
T PF10334_consen 155 LPA-PLVRRHFDHLRKLWQLDR----SSD-DEVE--------LPDILSLEHL-RD---EDYRRFCVAVSAASSILERLDE 216 (229)
T ss_pred CCc-chHHHHHHHHHHhhhhhh----hhc-ccch--------hhhhhhHHHH-hC---cChHHHHHHHHHHHHHHHHHHH
Confidence 220 113333333333322110 000 0000 00000 000 01 1234445555667788999999
Q ss_pred HHHHHHHH
Q 041036 457 IVNGVNEL 464 (504)
Q Consensus 457 ~~~~~~el 464 (504)
++..|.+|
T Consensus 217 lv~~vK~l 224 (229)
T PF10334_consen 217 LVIVVKEL 224 (229)
T ss_pred HHHHHHHH
Confidence 99999987
No 20
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=98.10 E-value=0.0052 Score=69.24 Aligned_cols=160 Identities=19% Similarity=0.163 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHhh-----ccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041036 67 VIHGLKVGLAISLVSLFYYMRPLYDGVGGNAMWAVMTVVVVF-----ESSVGATLGKCINRAIGTFLAGSLGVGVHWIAF 141 (504)
Q Consensus 67 ~~~AlK~glA~~Lasll~~~~~~~~~l~~~~~WAviTvvvV~-----~psvG~Tl~kgl~RilGTliG~~la~~i~~l~~ 141 (504)
.+-++|+++++.+++++... .+|+ .|.-+++.+.|++ .|+--. -..+=+.||++|..+|+++.++..
T Consensus 353 ~~~glRa~~ai~~~~~fWI~----TgW~-~Ga~a~~~aAV~~~LfA~~~nP~~---~~~~fl~Gtl~a~~~a~l~~f~vL 424 (652)
T PRK10631 353 MINGWRTTLATALGTLFWLW----TGWT-SGSGAMVMIAVVTSLAMRLPNPRM---VAIDFLYGTLAALPLGALYFMVII 424 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHH----ccCc-hHHHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888876543 5677 5655555554443 333332 244446899999998888765441
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 041036 142 HSGKNLEPIVLGISLFLLASAATFSRFMPTIKARFDYGIMIFILTFSLVSVSGYRVDRLLELAQQRLSTIAIGASICIII 221 (504)
Q Consensus 142 ~~g~~~~p~~l~l~vfl~~~~~~~~~f~p~~k~~~~Ya~~if~lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~iallv 221 (504)
..-+. ...++.+++..+. .++-..+ ++..++..-+.+.++.++.......--+...++--+..++|+++|+++
T Consensus 425 P~i~~-~f~lL~laLap~~---~~~g~~~---~~~~~~~lg~~i~f~~~l~l~n~~~~d~~~FlN~alA~v~Gi~~A~l~ 497 (652)
T PRK10631 425 PNTQQ-SMLLLCISLGVLG---FFIGIEV---QKRRLGSLGALASTINILVLDNPMTFHFSQFLDSALGQIVGCFLALIV 497 (652)
T ss_pred hcccc-cHHHHHHHHHHHH---HHHHHHh---cccHHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1222222222111 1111111 223455333333444333222221112556677778899999999999
Q ss_pred HhhcccccchHHHHHHHHHH
Q 041036 222 SMLFCPMWAGDELHLLICQN 241 (504)
Q Consensus 222 s~li~P~~a~~~L~~~l~~~ 241 (504)
..++.|.......++.+...
T Consensus 498 f~lirp~~~~r~~rrL~~~~ 517 (652)
T PRK10631 498 ILLVRDNSRDRTGRVLLNQF 517 (652)
T ss_pred HHHhCCCCHHHHHHHHHHHH
Confidence 98888886555555544443
No 21
>PF11168 DUF2955: Protein of unknown function (DUF2955); InterPro: IPR022604 Some members in this group of proteins with unknown function are annotated as membrane proteins. However, this cannot be confirmed.
Probab=97.12 E-value=0.017 Score=52.72 Aligned_cols=137 Identities=15% Similarity=0.227 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchH
Q 041036 70 GLKVGLAISLVSLFYYMRPLYDGVGGNAMWAVMTVVVVFESSVGATLGKCINRAIGTFLAGSLGVGVHWIAFHSGKNLEP 149 (504)
Q Consensus 70 AlK~glA~~Lasll~~~~~~~~~l~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliG~~la~~i~~l~~~~g~~~~p 149 (504)
++|.+++.+++..+ ....+++ .|+-+.+-.++++.+.---+.+...+=++.+++-+..+.++..+. .+ .|
T Consensus 2 ~LRia~g~~l~l~~----~~~~~~~-~p~~~pvf~~~lL~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~ll--~~---~P 71 (140)
T PF11168_consen 2 ALRIAFGVTLGLFL----SKLFGWP-LPFFAPVFPAILLGMVPPPPLKMLLQLLLVALLTALEGLLLSGLL--QD---YP 71 (140)
T ss_pred eeehhHHHHHHHHH----HHHHCCC-chHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--hc---CC
Confidence 47888888888444 4457788 899999999988866666677777777778887777777777665 22 34
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccchhHHHH-HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041036 150 IVLGISLFLLASAATFSRFMPTIKARFDYGIM-IFILTFSLVSVSGYRVDRLLELAQQRLSTIAIGASICIIISML 224 (504)
Q Consensus 150 ~~l~l~vfl~~~~~~~~~f~p~~k~~~~Ya~~-if~lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~iallvs~l 224 (504)
....+.++++ .|.+|+...+++ .+.+. +..+...++...+..+ ...+.++......|++++.++.++
T Consensus 72 ~~~~l~v~l~----~~~~f~~~~~~~-~~l~~~~~lv~~~ii~~f~~~~---~~~~~~l~~~l~~~~~iav~i~~l 139 (140)
T PF11168_consen 72 VVMLLLVFLL----FFWSFYRMSRGP-KFLFGTMLLVGLSIIPVFASYN---TADAEDLILSLVLAILIAVLIAAL 139 (140)
T ss_pred HHHHHHHHHH----HHHHHHHHhCCC-chHHHHHHHHHHHHHHHHHhcC---cchHHHHHHHHHHHHHHHHHHHHh
Confidence 4443333331 122233223332 23322 2223333333322222 245777888888888888887754
No 22
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=92.41 E-value=26 Score=40.79 Aligned_cols=125 Identities=13% Similarity=0.079 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHH-HHHHHHHHHHhcCCCch
Q 041036 120 INRAIGTFLAGSLGVGVHWIAFHSGKNLEPIVLGISLFLLASAATFSRFMPTIKARFDYGIM-IFILTFSLVSVSGYRVD 198 (504)
Q Consensus 120 l~RilGTliG~~la~~i~~l~~~~g~~~~p~~l~l~vfl~~~~~~~~~f~p~~k~~~~Ya~~-if~lT~~lV~l~~~~~~ 198 (504)
+-.+.|.-+|+..|+++..+....+. ..++.+++.-| .|.+++.+| +--.++.. -|+++..++.+|.....
T Consensus 189 ~a~~gG~~~Gaa~Gv~~Gli~~l~~~-~~~~~~~~~af-~GLlaG~fk------~~gK~g~~~g~~l~~~il~~y~~~~~ 260 (764)
T TIGR02865 189 ISYIGGSGAGAAGGVVIGVILGLANN-ANLYQIGVFGF-AGLLGGIFK------ELGKIGTGIGYLVGFLILAFYTQGSV 260 (764)
T ss_pred HHHhcCchHhHHHHHHHHHHHHhcCc-cHHHHHHHHHH-HHHHHHhhc------cCCcceeeHHHHHHHHHHHHHhccch
Confidence 34455666777777777666654443 35666654333 244555554 11223332 45556656666543232
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh---------hcccccc-------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041036 199 RLLELAQQRLSTIAIGASICIIISM---------LFCPMWA-------GDELHLLICQNLEKLAHSLDECVVEY 256 (504)
Q Consensus 199 ~~~~~A~~R~~~i~IGi~iallvs~---------li~P~~a-------~~~L~~~l~~~l~~la~~l~~~~~~y 256 (504)
+. ... +.++++++++-+++=- +.++... .+++++.+...++..++.++.+.+.+
T Consensus 261 ~~---~~~-~~e~~ia~~lFll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~a~~~~~Ls~tf 330 (764)
T TIGR02865 261 AF---SLA-LYEALIATLLFLLIPNKIYKKLERYLDGERKQPDLQEDYMRKVREIAAEKLEEFSEVFRELSNTF 330 (764)
T ss_pred hH---HHH-HHHHHHHHHHHHHhhHHHHHHHHhhCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 111 5666666665443321 0111110 12367777777888888877765544
No 23
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=84.63 E-value=4.4 Score=32.64 Aligned_cols=46 Identities=22% Similarity=0.259 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 041036 209 STIAIGASICIIISMLFCPMWAGDELHLLICQNLEKLAHSLDECVVE 255 (504)
Q Consensus 209 ~~i~IGi~iallvs~li~P~~a~~~L~~~l~~~l~~la~~l~~~~~~ 255 (504)
...++|++++.++.+|+-| ..+.++|+.+.+..+.+.+.++...+.
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP-~sG~e~R~~l~~~~~~~~~~~~~~~~~ 48 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAP-KSGKETREKLKDKAEDLKDKAKDLYEE 48 (74)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999998888 678899999999988887776654443
No 24
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=81.79 E-value=26 Score=37.15 Aligned_cols=75 Identities=13% Similarity=0.262 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 041036 179 GIMIFILTFSLVSVSGYRVDRLLELAQQRLSTIAIGASICIIISMLFCPMWAGDELH-LLICQNLEKLAHSLDECVVEYF 257 (504)
Q Consensus 179 a~~if~lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~iallvs~li~P~~a~~~L~-~~l~~~l~~la~~l~~~~~~y~ 257 (504)
|..++...|+++.+...+....-+ ..|+. ++++++++++. .+.+-.|-+.-.+ -++.+.++.+.+-....++.+.
T Consensus 99 g~Figtfvy~l~~l~~i~~~~~~~--~p~~~-~~~a~~l~i~~-v~~li~fI~~i~~~iqv~~ii~~i~~~~~~~i~~~~ 174 (371)
T PF10011_consen 99 GTFIGTFVYSLLVLIAIRSGDYGS--VPRLS-VFIALALAILS-VVLLIYFIHHIARSIQVSNIIARIEEDARKAIDRLY 174 (371)
T ss_pred HHHHHHHHHHHHHHHHcccccccc--CcchH-HHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhh
Confidence 344555566777766554432111 45555 66665555443 2333344333222 2234445555555555555444
No 25
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=80.11 E-value=8.8 Score=34.91 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=31.4
Q ss_pred hcCCCCCchHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041036 90 YDGVGGNAMWAVMTVVVVFESSVGATLGKCINRAIGTFLAGSLGVGVHW 138 (504)
Q Consensus 90 ~~~l~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliG~~la~~i~~ 138 (504)
++++++.-..+.++++.++...-..... .++|++-|++|.++|+++-+
T Consensus 92 ~l~~~~~~~~a~v~~~~i~~~~~~~~~~-~~~r~l~t~iG~~va~lVN~ 139 (141)
T PF06081_consen 92 WLKLGEGIIVAAVTFVHILLSGSDSFSY-ALNRVLLTLIGIGVALLVNL 139 (141)
T ss_pred HhCCCCeehHHHHHHHHHHHcCCccHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4555533445666666665443333333 99999999999999988754
No 26
>PRK11677 hypothetical protein; Provisional
Probab=75.73 E-value=15 Score=33.46 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhhccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041036 209 STIAIGASICIIISMLFCPMW-AGDELHLLICQNLEKLAHSLDECVVEYF 257 (504)
Q Consensus 209 ~~i~IGi~iallvs~li~P~~-a~~~L~~~l~~~l~~la~~l~~~~~~y~ 257 (504)
+..+||++|++++..+.-|.. ....|.+.+.+.-..+.+|=+.+.+++.
T Consensus 8 i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~YkqeV~~HFa 57 (134)
T PRK11677 8 IGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYRQELVSHFA 57 (134)
T ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999998777763 5566777777766666666555555443
No 27
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.95 E-value=12 Score=32.71 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh
Q 041036 115 TLGKCINRAIGTFLAGSLGVGVHWIAFHSGKNLEPIVLGISLFLLASAATFSR 167 (504)
Q Consensus 115 Tl~kgl~RilGTliG~~la~~i~~l~~~~g~~~~p~~l~l~vfl~~~~~~~~~ 167 (504)
-+.-+..=+-|+++|+++|+++-.++ |. .|+.+.+ ..++++++.+..
T Consensus 45 a~klssefIsGilVGa~iG~llD~~a---gT--sPwglIv-~lllGf~AG~ln 91 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLLDKFA---GT--SPWGLIV-FLLLGFGAGVLN 91 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc---CC--CcHHHHH-HHHHHHHHHHHH
Confidence 34445566789999999999998876 43 3443321 223455555543
No 28
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=71.75 E-value=1.2e+02 Score=30.70 Aligned_cols=51 Identities=14% Similarity=-0.035 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHH----HHHHHHHHHHHHHHHH
Q 041036 198 DRLLELAQQRLSTIAIGASICIIISMLFCPMWAGDE----LHLLICQNLEKLAHSL 249 (504)
Q Consensus 198 ~~~~~~A~~R~~~i~IGi~iallvs~li~P~~a~~~----L~~~l~~~l~~la~~l 249 (504)
++.+..+..=++.-+.-.++++++. .++|.+..++ ....+++-++.-++++
T Consensus 69 ~~~~~~~~l~~~Gglwy~~lsl~~~-~l~p~r~~rqaLa~~y~~lA~yl~~ka~~~ 123 (284)
T PF12805_consen 69 PEALEHALLFLAGGLWYLLLSLLWW-PLRPYRPVRQALAECYRALADYLRAKARFF 123 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4678888888888888888888876 5899887553 3455666666656655
No 29
>COG4129 Predicted membrane protein [Function unknown]
Probab=71.27 E-value=28 Score=36.44 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHH
Q 041036 116 LGKCINRAIGTFLAGSLGVGVHWIAFHSGKNLEPIVLG 153 (504)
Q Consensus 116 l~kgl~RilGTliG~~la~~i~~l~~~~g~~~~p~~l~ 153 (504)
..+...|++=|.+|+.+++.+..+ .|++ .|+.-+
T Consensus 6 ~~~ig~RtlKt~ia~~La~~ia~~---l~~~-~~~~A~ 39 (332)
T COG4129 6 MRKIGARTLKTGLAAGLALLIAHL---LGLP-QPAFAG 39 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hCCC-chHHHH
Confidence 456789999999999999988875 4654 444433
No 30
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=70.75 E-value=21 Score=38.74 Aligned_cols=52 Identities=21% Similarity=0.110 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHhhccChhhHHHHHHHHHHH
Q 041036 73 VGLAISLVSLFYYMRPLYDGVGGNAMWAVMTVVVVFESSVGATLGKCINRAIG 125 (504)
Q Consensus 73 ~glA~~Lasll~~~~~~~~~l~~~~~WAviTvvvV~~psvG~Tl~kgl~RilG 125 (504)
+|+|+++-.++-+...-+.+|. -+|++.-.+++.+-..+.....|+..|.++
T Consensus 331 VGlAl~lFYlLLLSlSEhi~F~-~AYliAa~a~i~Li~~Y~~~vl~~~k~~~~ 382 (430)
T PF06123_consen 331 VGLALVLFYLLLLSLSEHIGFN-LAYLIAALACIGLISLYLSSVLKSWKRGLI 382 (430)
T ss_pred HHHHHHHHHHHHHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 5566655544433344445565 688888888888877777777777777543
No 31
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=68.18 E-value=21 Score=31.66 Aligned_cols=43 Identities=28% Similarity=0.373 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHH
Q 041036 208 LSTIAIGASICIIISMLFCPMWAGDELHLLICQNLEKLAHSLDE 251 (504)
Q Consensus 208 ~~~i~IGi~iallvs~li~P~~a~~~L~~~l~~~l~~la~~l~~ 251 (504)
++-+++|++++.++..++-| ..+..+|+.+.+..+.+-...+.
T Consensus 8 l~G~liGgiiGa~aaLL~AP-~sGkelR~~~K~~~~~~~~~ae~ 50 (115)
T COG4980 8 LFGILIGGIIGAAAALLFAP-KSGKELRKKLKKSGDALFELAED 50 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCC-cccHHHHHHHHHHHHHhHHHHHH
Confidence 46788999999999987777 46778886666655555444443
No 32
>PRK11715 inner membrane protein; Provisional
Probab=63.60 E-value=52 Score=35.80 Aligned_cols=54 Identities=19% Similarity=0.081 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHhhccChhhHHHHHHHHHHHH
Q 041036 72 KVGLAISLVSLFYYMRPLYDGVGGNAMWAVMTVVVVFESSVGATLGKCINRAIGT 126 (504)
Q Consensus 72 K~glA~~Lasll~~~~~~~~~l~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGT 126 (504)
=+|+|+++-.++-+...-..+|. -+|++.-.+++.+-.-+.....|+..|.++-
T Consensus 336 LVGlAl~lFYLLLLSlSEHigF~-~AYliAa~a~v~li~~Y~~~vl~~~k~g~~~ 389 (436)
T PRK11715 336 LVGLALVLFYLLLLSLSEHIGFT-LAYLIAALACVLLIGFYLSAVLRSWKRGLLF 389 (436)
T ss_pred HHHHHHHHHHHHHHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 35666655544444444445665 7888888888888777777888888876543
No 33
>PRK10263 DNA translocase FtsK; Provisional
Probab=61.49 E-value=2.6e+02 Score=34.73 Aligned_cols=14 Identities=29% Similarity=0.276 Sum_probs=5.6
Q ss_pred hhhHHHHHHHHHHH
Q 041036 112 VGATLGKCINRAIG 125 (504)
Q Consensus 112 vG~Tl~kgl~RilG 125 (504)
+|+.+...+.-++|
T Consensus 67 VGA~LAD~L~~LFG 80 (1355)
T PRK10263 67 PGAWLADTLFFIFG 80 (1355)
T ss_pred HHHHHHHHHHHHHh
Confidence 34444444433333
No 34
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=60.05 E-value=1.3e+02 Score=35.54 Aligned_cols=20 Identities=15% Similarity=0.595 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 041036 209 STIAIGASICIIISMLFCPM 228 (504)
Q Consensus 209 ~~i~IGi~iallvs~li~P~ 228 (504)
..+.+|+++|+++++++.|.
T Consensus 835 ~~~~~gi~~~l~~~l~~lPa 854 (862)
T TIGR03480 835 ILLSLGLGLTLLCTLIFLPA 854 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56778999999999999995
No 35
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=58.20 E-value=57 Score=29.26 Aligned_cols=43 Identities=19% Similarity=0.165 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhhcccccc-hHHHHHHHHHHHHHHHHHHHH
Q 041036 209 STIAIGASICIIISMLFCPMWA-GDELHLLICQNLEKLAHSLDE 251 (504)
Q Consensus 209 ~~i~IGi~iallvs~li~P~~a-~~~L~~~l~~~l~~la~~l~~ 251 (504)
+..+||++|++++..+..+... ...|.+.+.+.-..+.+|=..
T Consensus 4 i~lvvG~iiG~~~~r~~~~~~~~q~~l~~eL~~~k~el~~yk~~ 47 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGRLTSSNQQKQAKLEQELEQAKQELEQYKQE 47 (128)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888777766532 345555555555555544333
No 36
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=57.65 E-value=1.8e+02 Score=31.75 Aligned_cols=114 Identities=19% Similarity=0.169 Sum_probs=60.9
Q ss_pred hccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCchHHHHHHHHHHHHHHHHHHhhhhcc---c-----cchhH
Q 041036 108 FESSVGATLGKCINRAIGTFLAGSLGVGVHWIAFHSG-KNLEPIVLGISLFLLASAATFSRFMPTI---K-----ARFDY 178 (504)
Q Consensus 108 ~~psvG~Tl~kgl~RilGTliG~~la~~i~~l~~~~g-~~~~p~~l~l~vfl~~~~~~~~~f~p~~---k-----~~~~Y 178 (504)
.+-+.|.--.+-.--+.|++.|++.|.+.-.+....+ ....|.. .++.++.|++.+++|-.-.. . .+..|
T Consensus 93 iKIsFgfIpi~l~G~LFGP~~G~l~g~lsDlLg~if~~G~fFpGF-TLsA~L~GlIyGl~r~~l~~~~~~~~~~~~~~~y 171 (477)
T PRK12821 93 FRVTLELILVKISGLLFGPIIGIFSAATIDFLTVIFSGGVFNYGY-VLGAILTGMIAGILREVLISTKYLKNRNLSDFAY 171 (477)
T ss_pred EEEehhhHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCccHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHH
Confidence 3445677777777788999999999987765542222 1122322 24455666666666632111 1 01234
Q ss_pred HHH-------HHHHHHHHH-HhcC----CC-----------chhHHHHHHHHHHHHHHHHHHHHHHH
Q 041036 179 GIM-------IFILTFSLV-SVSG----YR-----------VDRLLELAQQRLSTIAIGASICIIIS 222 (504)
Q Consensus 179 a~~-------if~lT~~lV-~l~~----~~-----------~~~~~~~A~~R~~~i~IGi~iallvs 222 (504)
... .|++|-.++ .++. .+ .+..+.+...+...|++|.+++.++.
T Consensus 172 ~~~s~~~~~a~fl~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~is~~~~~~i~~~f~~~~i~~ 238 (477)
T PRK12821 172 LVLSVGMVIASFLLTQFFVISVTTNLPEIRINGGFDLSFNAVSQTFKISLVVYTWIILYFGIGIIIF 238 (477)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccccccccCCCeEEEeccCCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 332 233332222 1220 00 12336788888888888877765543
No 37
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=56.96 E-value=1.6e+02 Score=27.89 Aligned_cols=26 Identities=8% Similarity=0.027 Sum_probs=17.1
Q ss_pred HhhccChhhHHHHHHHHHHHHHHHHHHHH
Q 041036 106 VVFESSVGATLGKCINRAIGTFLAGSLGV 134 (504)
Q Consensus 106 vV~~psvG~Tl~kgl~RilGTliG~~la~ 134 (504)
+.++|-......++. +|+++|.++-.
T Consensus 53 ~ll~Pf~~g~wk~t~---~G~~igi~~~g 78 (173)
T PF11085_consen 53 FLLEPFALGDWKNTW---LGNLIGIVFIG 78 (173)
T ss_pred hhhhhhhccchhhhh---HHHHHHHHHHH
Confidence 567887777776664 67776655433
No 38
>PRK09823 putative inner membrane protein; Provisional
Probab=55.18 E-value=1.7e+02 Score=26.81 Aligned_cols=90 Identities=18% Similarity=0.205 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHH--HHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCC
Q 041036 119 CINRAIGTFLAGSLGVGVHWIAFHSGKNLEPIVLG--ISLFLLASAATFSRFMPTIKARFDYGIMIFILTFSLVSVSGYR 196 (504)
Q Consensus 119 gl~RilGTliG~~la~~i~~l~~~~g~~~~p~~l~--l~vfl~~~~~~~~~f~p~~k~~~~Ya~~if~lT~~lV~l~~~~ 196 (504)
++.-++|+.+|+.+.++...+. .|.+ .+.++. +.++-+....+ +-|+..-+.+|-..+.. -
T Consensus 12 ~wFallGPlIGv~~~i~~i~f~--~~~~-~~~lll~i~~i~plf~~l~-----------w~~g~~pAlLTGVa~Ac---l 74 (160)
T PRK09823 12 LWFALLGPLIGVLFLVLYIFFL--PGAK-EPLLLLVIIQVLPLFLLLS-----------WTTGAIPALLTGVAVAC---L 74 (160)
T ss_pred hHHHHhcchhhhHHHHHHHHhc--CCCC-CchhhhHHHHhhHHHHHHH-----------HHHhhHHHHHHHHHHHh---C
Confidence 4455789999999888776554 4433 444332 11221111111 33555555566554443 3
Q ss_pred chhHHHHHHHHHHHHHH-HHHHHHHHHhhc
Q 041036 197 VDRLLELAQQRLSTIAI-GASICIIISMLF 225 (504)
Q Consensus 197 ~~~~~~~A~~R~~~i~I-Gi~iallvs~li 225 (504)
+..+++-.++|.+.-.+ |++++.+.+..+
T Consensus 75 P~kiyq~~~~R~lacgi~G~vIttLy~~~~ 104 (160)
T PRK09823 75 PEKIYQQKIYRCLACGIGGVVITTLYCAVI 104 (160)
T ss_pred cHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 56889999999875444 455666665543
No 39
>PF06496 DUF1097: Protein of unknown function (DUF1097); InterPro: IPR009476 This family consists of several bacterial putative membrane proteins.
Probab=54.48 E-value=1.7e+02 Score=26.58 Aligned_cols=68 Identities=12% Similarity=0.064 Sum_probs=44.5
Q ss_pred CchHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHH
Q 041036 96 NAMWAVMTVVVVFESSVGATLGKCINRAIGTFLAGSLGVGVHWIAFHSGKNLEPIVLGISLFLLASAATF 165 (504)
Q Consensus 96 ~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliG~~la~~i~~l~~~~g~~~~p~~l~l~vfl~~~~~~~ 165 (504)
-+.|+..-..-.+--. |...+...+=..+...|.+.|.+...+....+.. .+....+.+++.++...+
T Consensus 20 l~~W~~Figwa~yfa~-G~~~~~~~~~~~~~~~Gi~~a~~~~~~~~~~~~~-~~~~~~i~v~i~~~~m~~ 87 (144)
T PF06496_consen 20 LPGWAGFIGWASYFAA-GGGKKGLKKSLASNLSGIVWAWLAILLSGLLGGN-GPLALAIVVGIFSFVMVY 87 (144)
T ss_pred chHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHH
Confidence 3469877665554434 8888888888889999999999998887665432 234444444444433333
No 40
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=53.51 E-value=32 Score=24.42 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=28.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041036 436 EILPLATLASLLIENAAKIEVIVNGVNELAV 466 (504)
Q Consensus 436 ~~~~~~~~~sll~e~v~~~~~~~~~~~el~~ 466 (504)
-..|.+.-.-||+-+=.++|++.+++++|.+
T Consensus 6 ~GFPi~va~yLL~R~E~kld~L~~~i~~L~~ 36 (38)
T PF12841_consen 6 VGFPIAVAIYLLVRIEKKLDELTESINELSE 36 (38)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999999985
No 41
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=53.45 E-value=2.8e+02 Score=28.74 Aligned_cols=9 Identities=22% Similarity=0.482 Sum_probs=4.0
Q ss_pred HHhhccccc
Q 041036 221 ISMLFCPMW 229 (504)
Q Consensus 221 vs~li~P~~ 229 (504)
+-++++|..
T Consensus 172 vlFl~fPR~ 180 (325)
T PF11992_consen 172 VLFLLFPRL 180 (325)
T ss_pred HHHHHhhcc
Confidence 344445543
No 42
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=51.86 E-value=1.2e+02 Score=26.11 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhh
Q 041036 209 STIAIGASICIIISML 224 (504)
Q Consensus 209 ~~i~IGi~iallvs~l 224 (504)
.++.+|.++|++.-.+
T Consensus 82 ~E~~iG~iiA~l~~~l 97 (99)
T PF09877_consen 82 IETVIGLIIALLIYLL 97 (99)
T ss_pred ehhhhhHHHHHHHHHH
Confidence 6788999999987654
No 43
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=49.65 E-value=2e+02 Score=26.32 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 041036 201 LELAQQRLSTIAIGASICIIISMLFCP 227 (504)
Q Consensus 201 ~~~A~~R~~~i~IGi~iallvs~li~P 227 (504)
+.....|+...++-.++..++..++.+
T Consensus 139 ~~~~~~~~~~~i~~~~v~~i~~~~l~~ 165 (169)
T PF07155_consen 139 WAAFASGLPANIINAVVGAIVALILYK 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555444443
No 44
>COG5547 Small integral membrane protein [Function unknown]
Probab=46.80 E-value=82 Score=24.47 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041036 116 LGKCINRAIGTFLAGSLGVGVHWI 139 (504)
Q Consensus 116 l~kgl~RilGTliG~~la~~i~~l 139 (504)
+.+.-.|++|-++|.++|+++..+
T Consensus 4 lk~fkypIIgglvglliAili~t~ 27 (62)
T COG5547 4 LKKFKYPIIGGLVGLLIAILILTF 27 (62)
T ss_pred HHHhccchHHHHHHHHHHHHHHHH
Confidence 466778899999999999888654
No 45
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=45.40 E-value=4.1e+02 Score=28.35 Aligned_cols=76 Identities=20% Similarity=0.184 Sum_probs=43.5
Q ss_pred HHHhhcccCch-hHHHHHHHHH-HHHHHHHHHHHhhhhcCCCCCchHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHH
Q 041036 55 KAWNLAVDEPK-KVIHGLKVGL-AISLVSLFYYMRPLYDGVGGNAMWAVMTVVVVFESSVGATLGKCINRAIGTFLAGSL 132 (504)
Q Consensus 55 ~~~~~~~~dp~-~~~~AlK~gl-A~~Lasll~~~~~~~~~l~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliG~~l 132 (504)
.++..+-.||+ ....+++.|+ |..+..++|.... |.+-. ....+.-.-+-+..+....++.+|+.-+.++
T Consensus 202 ~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~-~lGa~-------~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll 273 (378)
T TIGR00796 202 AIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLF-YLGAT-------SAAAAGDAVNGAQILSAYSQHLFGSLGSFLL 273 (378)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcC-------cHhhhcccCCcHHHHHHHHHHHcchhHHHHH
Confidence 33444555664 5577888888 6555555443322 11111 0010110114677788889999999888888
Q ss_pred HHHHHH
Q 041036 133 GVGVHW 138 (504)
Q Consensus 133 a~~i~~ 138 (504)
++++..
T Consensus 274 ~i~v~l 279 (378)
T TIGR00796 274 GLIITL 279 (378)
T ss_pred HHHHHH
Confidence 877753
No 46
>PF13295 DUF4077: Domain of unknown function (DUF4077)
Probab=43.89 E-value=2.2e+02 Score=25.32 Aligned_cols=77 Identities=21% Similarity=0.517 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCc-hhHHH-----------HHHHHHHHHHHHHHHHH
Q 041036 152 LGISLFLLASAATFSRFMPTIKARFDYGIMIFILTFSLVSVSGYRV-DRLLE-----------LAQQRLSTIAIGASICI 219 (504)
Q Consensus 152 l~l~vfl~~~~~~~~~f~p~~k~~~~Ya~~if~lT~~lV~l~~~~~-~~~~~-----------~A~~R~~~i~IGi~ial 219 (504)
.|+++.+++-..+|. ..+.+-|.|......+.++.+++-.++. +.+++ +.-.|+.-|+-|+++.
T Consensus 54 cgisvvvfgtlltfi---esmeamykyimtfmllmmsfimvqafnespavfqmvyftlavsliylserlvvilggvavv- 129 (175)
T PF13295_consen 54 CGISVVVFGTLLTFI---ESMEAMYKYIMTFMLLMMSFIMVQAFNESPAVFQMVYFTLAVSLIYLSERLVVILGGVAVV- 129 (175)
T ss_pred hchhhhhHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhHHHHhcccchhe-
Confidence 344455544444443 3444447777655555566666554443 22222 2346777666665543
Q ss_pred HHHhhcccccchHH
Q 041036 220 IISMLFCPMWAGDE 233 (504)
Q Consensus 220 lvs~li~P~~a~~~ 233 (504)
..+.++..|..+-
T Consensus 130 -ltfilcsywpeqf 142 (175)
T PF13295_consen 130 -LTFILCSYWPEQF 142 (175)
T ss_pred -eehhhhhcChHHH
Confidence 3445556665443
No 47
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=42.97 E-value=4.3e+02 Score=28.72 Aligned_cols=24 Identities=8% Similarity=0.103 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 041036 201 LELAQQRLSTIAIGASICIIISML 224 (504)
Q Consensus 201 ~~~A~~R~~~i~IGi~iallvs~l 224 (504)
+.-...|...+++|++++.++..+
T Consensus 189 ~~~g~~~~~svLiGiv~G~v~a~~ 212 (433)
T PRK11412 189 FLPQRIARYSLLVGTIVGWILWAF 212 (433)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344577999999999999998543
No 48
>COG4452 CreD Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]
Probab=41.39 E-value=1.8e+02 Score=31.06 Aligned_cols=78 Identities=18% Similarity=0.177 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHh-hccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHH
Q 041036 72 KVGLAISLVSLFYYMRPLYDGVGGNAMWAVMTVVVV-FESSVGATLGKCINRAIGTFLAGSLGVGVHWIAFHSGKNLEPI 150 (504)
Q Consensus 72 K~glA~~Lasll~~~~~~~~~l~~~~~WAviTvvvV-~~psvG~Tl~kgl~RilGTliG~~la~~i~~l~~~~g~~~~p~ 150 (504)
=+|+|+.+-.++-+..+-.-+|. .-|++-+...+ +..-+=.+..|+..|.+|=.+|-...+++.|-...+.+ ...
T Consensus 330 LVGlsLv~FYLLLLaLsEHiGFt--~Ayl~aSla~a~l~~~YL~avl~~~~~g~~f~~~L~~lygvm~glL~~ed--yAL 405 (443)
T COG4452 330 LVGLSLVMFYLLLLALSEHIGFT--VAYLIASLAGALLNGIYLQAVLRGWRNGLLFFLALLLLYGVMFGLLNSED--YAL 405 (443)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcC--HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhH--HHH
Confidence 35566555544333333334444 33444333332 34444566688888888888888777777665433322 344
Q ss_pred HHH
Q 041036 151 VLG 153 (504)
Q Consensus 151 ~l~ 153 (504)
++|
T Consensus 406 L~G 408 (443)
T COG4452 406 LLG 408 (443)
T ss_pred HHh
Confidence 444
No 49
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=41.05 E-value=4e+02 Score=26.95 Aligned_cols=81 Identities=11% Similarity=0.082 Sum_probs=37.3
Q ss_pred cCCCCCchHHHHHHHHhhccChhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcC-CCchHHHHHHHHHHHHHHHHHHhh
Q 041036 91 DGVGGNAMWAVMTVVVVFESSVGATLG-KCINRAIGTFLAGSLGVGVHWIAFHSG-KNLEPIVLGISLFLLASAATFSRF 168 (504)
Q Consensus 91 ~~l~~~~~WAviTvvvV~~psvG~Tl~-kgl~RilGTliG~~la~~i~~l~~~~g-~~~~p~~l~l~vfl~~~~~~~~~f 168 (504)
.+.+...++.-+..++..-|..-.... +...+++--++|+++++.+........ ...++-. ..+|+.++++...-.
T Consensus 80 ~~yp~~t~~fF~GLIlgSip~l~k~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~--~~lf~~G~ia~~AMI 157 (257)
T PF04018_consen 80 ENYPIPTYSFFFGLILGSIPFLYKEIKKFSPKSIIFFLLGAIIALLLSFLSSATQSSLSNPSY--LYLFLAGAIAACAMI 157 (257)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHccccchhccCcchH--HHHHHHHHHHHHHHh
Confidence 344433444455555555555444333 344556666667666666654321101 0011111 124555555555555
Q ss_pred hhccc
Q 041036 169 MPTIK 173 (504)
Q Consensus 169 ~p~~k 173 (504)
.|.+.
T Consensus 158 lPGiS 162 (257)
T PF04018_consen 158 LPGIS 162 (257)
T ss_pred cCCCc
Confidence 66653
No 50
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=40.88 E-value=64 Score=27.78 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 041036 185 LTFSLVSVSGYRVDRLLELAQQRLSTIAIGASICIIISMLFCP 227 (504)
Q Consensus 185 lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~iallvs~li~P 227 (504)
+|..+++ ....++....+.+|+.-+++|++++++... +.|
T Consensus 19 it~~~v~--~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~-~~~ 58 (128)
T PF13515_consen 19 ITVVSVL--SPSYGATVNRAIQRILGTLIGVVLGLLLLY-LFP 58 (128)
T ss_pred HHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC
Confidence 3444443 234567789999999999999999999874 444
No 51
>PRK09776 putative diguanylate cyclase; Provisional
Probab=39.12 E-value=6.1e+02 Score=30.24 Aligned_cols=14 Identities=7% Similarity=0.152 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 041036 123 AIGTFLAGSLGVGV 136 (504)
Q Consensus 123 ilGTliG~~la~~i 136 (504)
.++.++.++++..+
T Consensus 75 ~~~~~~~~~~~~~l 88 (1092)
T PRK09776 75 TTINLVEAVVGAVL 88 (1092)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555544444433
No 52
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=38.14 E-value=3.9e+02 Score=27.91 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhcC
Q 041036 118 KCINRAIGTFLAGSLGVGVH-WIAFHSG 144 (504)
Q Consensus 118 kgl~RilGTliG~~la~~i~-~l~~~~g 144 (504)
+.+-|++=+++|+.+|+.+. .+....|
T Consensus 3 ~~ii~l~~~i~g~~lG~~~~p~ll~~~~ 30 (356)
T COG4956 3 KWIIILLFIIIGAVLGFAVIPELLADLG 30 (356)
T ss_pred HHHHHHHHHHHHhhhhHhhHHHHHhhcC
Confidence 45678888999999999887 4444444
No 53
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=37.86 E-value=25 Score=36.22 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041036 120 INRAIGTFLAGSLGVGVHWIA 140 (504)
Q Consensus 120 l~RilGTliG~~la~~i~~l~ 140 (504)
+-|+.|+++|+++|++...+.
T Consensus 344 ~IrinGallG~liG~~~~~i~ 364 (367)
T PF04286_consen 344 WIRINGALLGGLIGLLQYLIL 364 (367)
T ss_pred hhhhhhHHHHHHHHHHHHHHH
Confidence 458999999999999887654
No 54
>COG4325 Predicted membrane protein [Function unknown]
Probab=37.54 E-value=89 Score=33.42 Aligned_cols=23 Identities=13% Similarity=0.062 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 041036 237 LICQNLEKLAHSLDECVVEYFRH 259 (504)
Q Consensus 237 ~l~~~l~~la~~l~~~~~~y~~~ 259 (504)
.+...++++..-.-+.+++|..+
T Consensus 189 q~~n~i~kv~~~t~~l~~qlyp~ 211 (464)
T COG4325 189 QIDNIIDKVRLRTLGLVDQLYPE 211 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 35556666666665666666655
No 55
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=37.27 E-value=1.3e+02 Score=30.68 Aligned_cols=18 Identities=6% Similarity=0.100 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041036 120 INRAIGTFLAGSLGVGVH 137 (504)
Q Consensus 120 l~RilGTliG~~la~~i~ 137 (504)
..=++|.++|++.+.++.
T Consensus 34 ~Rll~~A~~Gal~~~~~~ 51 (293)
T PF03419_consen 34 WRLLLGAAIGALYSLLIF 51 (293)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334578888888777664
No 56
>PF14351 DUF4401: Domain of unknown function (DUF4401)
Probab=33.83 E-value=5.4e+02 Score=26.45 Aligned_cols=65 Identities=17% Similarity=0.239 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCC-CCchHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHH
Q 041036 69 HGLKVGLAISLVSLFYYMRPLYDGVG-GNAMWAVMTVVVVFESSVGATLGKCINRAIGTFLAGSLGVGV 136 (504)
Q Consensus 69 ~AlK~glA~~Lasll~~~~~~~~~l~-~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliG~~la~~i 136 (504)
+.=+.++|..++....+....++.+. ....|..++++... .-......+.|++++..++......
T Consensus 58 f~~q~ala~~laG~~~~~~gl~~~~~~~~~~~l~~~~i~~~---~~~l~~~~l~rfLs~~~~~~~l~~~ 123 (326)
T PF14351_consen 58 FLDQLALALFLAGQILLGFGLFDLFMSSLSVWLIFALILAV---LYFLMPDRLLRFLSAFLAAIALIGL 123 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 44455666666655555444443332 12344444443322 1223334788888666555444433
No 57
>TIGR00930 2a30 K-Cl cotransporter.
Probab=33.75 E-value=2.2e+02 Score=34.23 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=20.3
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041036 109 ESSVGATLGKCINRAIGTFLAGSLGVGVH 137 (504)
Q Consensus 109 ~psvG~Tl~kgl~RilGTliG~~la~~i~ 137 (504)
.|..|+. .--+.|.+|..+|+.+|+..+
T Consensus 139 ~p~aGG~-Y~yisralGp~~Gf~iG~~~~ 166 (953)
T TIGR00930 139 VVKGGGA-YYLISRSLGPEFGGSIGLIFA 166 (953)
T ss_pred CCCccHH-HHHHHHHhCcHHHHHHHHHHH
Confidence 3455555 445688999999999998664
No 58
>COG5438 Predicted multitransmembrane protein [Function unknown]
Probab=33.56 E-value=1.6e+02 Score=31.38 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=31.4
Q ss_pred CchHHHHHHHHhhc----cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041036 96 NAMWAVMTVVVVFE----SSVGATLGKCINRAIGTFLAGSLGVGVHWIAF 141 (504)
Q Consensus 96 ~~~WAviTvvvV~~----psvG~Tl~kgl~RilGTliG~~la~~i~~l~~ 141 (504)
+++|..+...++.. +-+.+--.|.+.-++||++|.++.+++.+++.
T Consensus 177 ~~i~v~ii~~viit~~tL~~v~g~n~KTl~A~~~Ti~~~~ls~il~~~~i 226 (385)
T COG5438 177 NPILVFIILCVIITAITLFMVNGINKKTLAAFIGTILGTLLSIILAYISI 226 (385)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69998877766643 22333346777777888888888777776653
No 59
>PHA00736 hypothetical protein
Probab=32.34 E-value=2.6e+02 Score=22.33 Aligned_cols=52 Identities=19% Similarity=0.339 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCchHHHHHHHHHHHHHHHHHHhhhhc
Q 041036 116 LGKCINRAIGTFLAGSLGVGVHWIA-FHSGKNLEPIVLGISLFLLASAATFSRFMPT 171 (504)
Q Consensus 116 l~kgl~RilGTliG~~la~~i~~l~-~~~g~~~~p~~l~l~vfl~~~~~~~~~f~p~ 171 (504)
++-+++-.+|+++|.++-+.+..+. ...|.. ..++.+++- .+...|..|+|-
T Consensus 5 islal~tglgpvi~viiil~mmgltykmagki-paii~gias---tf~lmfmdflpl 57 (79)
T PHA00736 5 ISLALQTGLGPVIAIIIILAMMGLTYKMAGKI-PAILVGIAS---TFTLMFMDFLPL 57 (79)
T ss_pred HHHHHHcCCccHHHHHHHHHHHhhHHHHhCCc-cHHHHHHHH---HHHHHHHHHHHH
Confidence 4556777788888877766655443 123442 223333221 223446666654
No 60
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=30.89 E-value=3.4e+02 Score=26.93 Aligned_cols=39 Identities=26% Similarity=0.141 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh---cCCCCCchHHHHHHHHh
Q 041036 69 HGLKVGLAISLVSLFYYMRPLY---DGVGGNAMWAVMTVVVV 107 (504)
Q Consensus 69 ~AlK~glA~~Lasll~~~~~~~---~~l~~~~~WAviTvvvV 107 (504)
+.+|.++|+.+..++++=+... -++..|+..++=++.++
T Consensus 4 ~l~rL~~A~~lG~lIGlERe~~~r~AGlRT~~LV~lGa~~~~ 45 (225)
T PRK15385 4 YILNLLAAMLLGALIGAERQWRQRMAGLRTNALVATGAAVFI 45 (225)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccCCceehHhHHHHHHHHHHH
Confidence 5678888888887777654432 23334555555333333
No 61
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=30.79 E-value=1.4e+02 Score=28.45 Aligned_cols=18 Identities=11% Similarity=-0.077 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041036 120 INRAIGTFLAGSLGVGVH 137 (504)
Q Consensus 120 l~RilGTliG~~la~~i~ 137 (504)
+..+.++++|+.++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (199)
T PF10112_consen 5 IRFIFRWILGVLIAAITF 22 (199)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555444443
No 62
>PRK10490 sensor protein KdpD; Provisional
Probab=28.33 E-value=3.7e+02 Score=32.03 Aligned_cols=7 Identities=14% Similarity=0.321 Sum_probs=3.7
Q ss_pred CCcceeE
Q 041036 7 RKLEWRI 13 (504)
Q Consensus 7 ~~~~~~~ 13 (504)
-..+|-+
T Consensus 277 ~~a~~~~ 283 (895)
T PRK10490 277 LGSVWHA 283 (895)
T ss_pred cCCCEEE
Confidence 3456653
No 63
>PF14348 DUF4400: Domain of unknown function (DUF4400)
Probab=28.19 E-value=2.6e+02 Score=26.62 Aligned_cols=47 Identities=9% Similarity=0.238 Sum_probs=32.6
Q ss_pred HhhcccCchhHHHHHHHHHHHHHHH-HHHHHhhhhcCCCCCchHHHHHHHHh
Q 041036 57 WNLAVDEPKKVIHGLKVGLAISLVS-LFYYMRPLYDGVGGNAMWAVMTVVVV 107 (504)
Q Consensus 57 ~~~~~~dp~~~~~AlK~glA~~Las-ll~~~~~~~~~l~~~~~WAviTvvvV 107 (504)
+..++.+|-...||.|...-+.... ++++..|. .-+|.|..+.+.++
T Consensus 138 ~~~g~eSp~~~h~a~~~~~~~~~~~~~lyL~lP~----~i~P~~~~l~~a~l 185 (198)
T PF14348_consen 138 FGFGRESPFVYHHAKRSVIPLLILPWVLYLSLPF----SIPPNLVPLPAALL 185 (198)
T ss_pred HcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHccc----ccChHHHHHHHHHH
Confidence 4577788887888888877777766 66776663 33677887644443
No 64
>cd02431 Ferritin_CCC1_C CCC1-related domain of ferritin. Ferritin_CCC1_like_C: The proteins of this family contain two domains. This is the C-terminal domain that is closely related to the CCC1, a vacuole transmembrane protein functioning as an iron and manganese transporter. The N-terminal domain is similar to ferritin-like diiron-carboxylate proteins, which are involved in a variety of iron ion related functions, such as iron storage and regulation, mono-oxygenation, and reactive radical production. This family may be unique to certain bacteria and archaea.
Probab=28.01 E-value=4.2e+02 Score=24.41 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHH-HHHhhc
Q 041036 123 AIGTFLAGSLGVGVH-WIAFHS 143 (504)
Q Consensus 123 ilGTliG~~la~~i~-~l~~~~ 143 (504)
.++..+++.+.+.+. |+...+
T Consensus 36 Gl~~~iA~a~SMa~G~YlS~ks 57 (149)
T cd02431 36 GLIVGIAAALSMAIGAYLSTKS 57 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 355666666666663 454333
No 65
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=27.99 E-value=7.9e+02 Score=26.53 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=29.2
Q ss_pred HHHHHHh--hccChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041036 101 VMTVVVV--FESSVGATLGKCINRAIGTFLAGSLGVGVHWIA 140 (504)
Q Consensus 101 viTvvvV--~~psvG~Tl~kgl~RilGTliG~~la~~i~~l~ 140 (504)
.+|..+| .....+..+..+..|+..+++|+++++++..+.
T Consensus 128 ~LTf~lV~vs~yr~~~~~~~A~~R~~~I~iGv~i~l~vsi~I 169 (406)
T PF11744_consen 128 ILTFCLVAVSGYRTDEFLMLAVWRLLTIVIGVAICLLVSIFI 169 (406)
T ss_pred HHHHHhheeecCCcchHHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 4443333 345567778999999999999999988887553
No 66
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=27.32 E-value=3.5e+02 Score=29.69 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041036 181 MIFILTFSLVSVSGYRVDRLLELAQQRLSTIAIGASICIIISMLFC 226 (504)
Q Consensus 181 ~if~lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~iallvs~li~ 226 (504)
.++..|.+++++.. .+--..-|.+-+++|.+++.++.++.-
T Consensus 177 ~la~~tl~~il~~~-----~f~~g~~~~i~ILiGlv~G~~la~~~G 217 (451)
T COG2233 177 GLALVTLLIILLIN-----RFGKGFLRRIPILIGLVVGYLLALFMG 217 (451)
T ss_pred HHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 36666766665532 234457788999999999988887654
No 67
>PF07907 YibE_F: YibE/F-like protein; InterPro: IPR012507 The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE (Q9CHC5 from SWISSPROT) and YibF (Q9CHC4 from SWISSPROT). Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.
Probab=27.09 E-value=2.8e+02 Score=27.77 Aligned_cols=69 Identities=20% Similarity=0.357 Sum_probs=42.7
Q ss_pred HHHHHHHH--HHHHHHHHHhhhh-cCCCCCchHHHHHHHHhhc----cChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041036 70 GLKVGLAI--SLVSLFYYMRPLY-DGVGGNAMWAVMTVVVVFE----SSVGATLGKCINRAIGTFLAGSLGVGVHWIA 140 (504)
Q Consensus 70 AlK~glA~--~Lasll~~~~~~~-~~l~~~~~WAviTvvvV~~----psvG~Tl~kgl~RilGTliG~~la~~i~~l~ 140 (504)
++|.-+++ .++.++..+.|.. .++ +++|+.+-+.+++- .-+.+--.|.+.=++||++|.+++.++.++.
T Consensus 22 G~~sllsL~~n~~~i~~~~i~~~~~G~--~~~~v~~i~~~~~~~vtl~lv~G~n~kt~~A~~~tl~~~~~~~~l~~~~ 97 (244)
T PF07907_consen 22 GLRSLLSLIFNFLIIFFVLIPLILNGY--NPILVTIIAAILITAVTLFLVNGFNKKTLAAFIGTLIGVLLAGILALLV 97 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554443 3444444445543 343 68887766555432 3355566888888899998888888777665
No 68
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=26.97 E-value=68 Score=25.60 Aligned_cols=19 Identities=11% Similarity=0.048 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041036 121 NRAIGTFLAGSLGVGVHWI 139 (504)
Q Consensus 121 ~RilGTliG~~la~~i~~l 139 (504)
.-+.||++|+++++++.++
T Consensus 51 kW~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 51 KWIWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456788888877766554
No 69
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=26.90 E-value=63 Score=28.63 Aligned_cols=18 Identities=17% Similarity=0.464 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041036 123 AIGTFLAGSLGVGVHWIA 140 (504)
Q Consensus 123 ilGTliG~~la~~i~~l~ 140 (504)
++|+++||++|.+...++
T Consensus 8 l~G~liGgiiGa~aaLL~ 25 (115)
T COG4980 8 LFGILIGGIIGAAAALLF 25 (115)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 578999999988877665
No 70
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=26.84 E-value=2.6e+02 Score=21.05 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041036 120 INRAIGTFLAGSLGVGVHWI 139 (504)
Q Consensus 120 l~RilGTliG~~la~~i~~l 139 (504)
..|++|.++|.++|+++..+
T Consensus 8 ~~~iiG~~~G~ila~l~l~~ 27 (51)
T PF10031_consen 8 RGKIIGGLIGLILALLILTF 27 (51)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 34677777777777666543
No 71
>PRK09855 PTS system N-acetylgalactosamine-specific transporter subunit IID; Provisional
Probab=25.92 E-value=3.1e+02 Score=27.78 Aligned_cols=95 Identities=20% Similarity=0.286 Sum_probs=49.7
Q ss_pred hcc--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH
Q 041036 108 FES--SVGATLGKCINRAIGTFLAGSLGVGVHWIAFHSGKNLEPIVLGISLFLLASAATFSRFMPTIKARFDYGIMIFIL 185 (504)
Q Consensus 108 ~~p--svG~Tl~kgl~RilGTliG~~la~~i~~l~~~~g~~~~p~~l~l~vfl~~~~~~~~~f~p~~k~~~~Ya~~if~l 185 (504)
|.| .+|+|+.-+..|.+-..+|+.+|. .|....|++.. .++.+ ..+.|++-. +..|..|.- .+
T Consensus 99 MGPlAGIGDSlf~gt~~pI~~~Ia~~lA~--------~Gn~lgpil~~-~~~~~---~~~~~~~~~-~~GY~~G~~--~i 163 (263)
T PRK09855 99 FGPIAGIGDAIFWFTLLPIMAGICSSFAS--------QGNLLGPILFF-AVYLL---IFFLRVGWT-HVGYSVGVK--AI 163 (263)
T ss_pred hccchhchhHHHHHHHHHHHHHHHHHHHh--------cCCcHHHHHHH-HHHHH---HHHHHHHHH-HHHHHhHHH--HH
Confidence 555 478888888888776655554442 34433333321 12221 122333221 122333331 11
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 041036 186 TFSLVSVSGYRVDRLLELAQQRLSTIAIGASICIIISM 223 (504)
Q Consensus 186 T~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~iallvs~ 223 (504)
+ .+.+ .-+-+.-+..-+..+++|+.++-.|++
T Consensus 164 ~----~l~~--~~~~it~~asilGl~vvGal~as~V~i 195 (263)
T PRK09855 164 D----KVRE--NSQMIARSATILGITVIGGLIASYVHI 195 (263)
T ss_pred H----HHHh--HHHHHHHHHHHHHHHHHHHHHHeeEEE
Confidence 1 1112 123456678888899999999988885
No 72
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=25.63 E-value=6.7e+02 Score=27.93 Aligned_cols=17 Identities=6% Similarity=-0.175 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHhhC
Q 041036 383 GEMNFAVQELKHALISL 399 (504)
Q Consensus 383 ~~~~~A~~~L~~~i~~~ 399 (504)
+.+.+...+|..-+|++
T Consensus 392 dkAreLil~LS~yfR~N 408 (557)
T COG3275 392 DKARELILYLSTYFRYN 408 (557)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35555666666666643
No 73
>PRK11660 putative transporter; Provisional
Probab=25.58 E-value=4.3e+02 Score=29.61 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhh
Q 041036 209 STIAIGASICIIISML 224 (504)
Q Consensus 209 ~~i~IGi~iallvs~l 224 (504)
..+..|++++++++.+
T Consensus 424 ~~~~~gi~~Gi~~s~~ 439 (568)
T PRK11660 424 FDMVIAISVGIVLASL 439 (568)
T ss_pred HhHHHHHHHHHHHHHH
Confidence 3444555555555544
No 74
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=24.48 E-value=4.2e+02 Score=22.16 Aligned_cols=53 Identities=32% Similarity=0.504 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hhccccchhHHHHHHHHHHHHH-HhcCCCchhHH
Q 041036 149 PIVLGISLFLLASAATFSRF-MPTIKARFDYGIMIFILTFSLV-SVSGYRVDRLL 201 (504)
Q Consensus 149 p~~l~l~vfl~~~~~~~~~f-~p~~k~~~~Ya~~if~lT~~lV-~l~~~~~~~~~ 201 (504)
+.++++.+.+.+....+.|+ .|.+..++|.-+...++-+.++ .+.+.+-++..
T Consensus 8 ~~iLgi~l~~~~~~Ly~lr~~~Pev~Rd~D~~fs~vgLl~g~IL~~~gwRldp~l 62 (84)
T PF07444_consen 8 SYILGIILILGGLALYFLRFFRPEVSRDYDIFFSSVGLLYGLILWFQGWRLDPIL 62 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcchhhhhhHHHHHHHHHHHHHHHHHhhcccHHH
Confidence 34555555554444444554 5666555665554333333333 34455555443
No 75
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=23.20 E-value=4.7e+02 Score=28.31 Aligned_cols=18 Identities=6% Similarity=0.010 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041036 123 AIGTFLAGSLGVGVHWIA 140 (504)
Q Consensus 123 ilGTliG~~la~~i~~l~ 140 (504)
.+|.++|.++|++.+.+.
T Consensus 360 ~v~~~~g~~~g~~~~~~~ 377 (449)
T TIGR00400 360 CVSILVGAILASVNFLRI 377 (449)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356666666665555433
No 76
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=23.17 E-value=5e+02 Score=22.85 Aligned_cols=85 Identities=13% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhhcCC---CCCchHHHHHHHHhh---------------cc
Q 041036 49 ICKFLEKAWNLAVDEPKKVIHGLKVGLAISLVSLFYYMRPLYDGV---GGNAMWAVMTVVVVF---------------ES 110 (504)
Q Consensus 49 ~~~~~~~~~~~~~~dp~~~~~AlK~glA~~Lasll~~~~~~~~~l---~~~~~WAviTvvvV~---------------~p 110 (504)
+.++.|..+ +.+..-+-..++..++...+-....+..- ..++.|+.+.+.++. ..
T Consensus 14 ~~G~~rG~~-------~~~~~l~~~i~a~~~a~~~~~~~~~~l~~~~~~~~~~~~~~iaf~~~f~~~~~i~~~i~~~l~~ 86 (146)
T PF02674_consen 14 IKGYRRGFI-------RELFSLIGLIVALFVAFLFYPPLAPFLSNYFSSLSPPFANIIAFIILFVLVYIIVRIIGKLLRR 86 (146)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041036 111 SVGATLGKCINRAIGTFLAGSLGVGVHWIA 140 (504)
Q Consensus 111 svG~Tl~kgl~RilGTliG~~la~~i~~l~ 140 (504)
.......+.+||++|.++|++-|+++.++.
T Consensus 87 ~~~~~~~~~~dr~lG~~~G~~~~~li~~~~ 116 (146)
T PF02674_consen 87 IVKKPFLGWLDRLLGALLGLAKGLLILSLL 116 (146)
T ss_pred HhhcccccHHHHHHHHHHHHHHHHHHHHHH
No 77
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=23.11 E-value=9.2e+02 Score=25.58 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcccCCCccCChhhHHHHHHHHHHHHhhC
Q 041036 347 LNNICMRLSSSSSNVLQELAFALKTMKQSSKINLSVGEMNFAVQELKHALISL 399 (504)
Q Consensus 347 ~~~~~~~l~~e~~~~L~~La~si~~m~~~~~~~~~~~~~~~A~~~L~~~i~~~ 399 (504)
...++.+++.+..++=.++...-..|+..+| +-.++.|+..|+..|+..
T Consensus 299 ~t~~L~~IseeLe~vK~emeerg~~mtD~sP----lv~IKqAl~kLk~EI~qM 347 (359)
T PF10498_consen 299 RTRELAEISEELEQVKQEMEERGSSMTDGSP----LVKIKQALTKLKQEIKQM 347 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCH----HHHHHHHHHHHHHHHHHh
Confidence 4556777777778887888877777776665 468999999999999865
No 78
>smart00793 AgrB Accessory gene regulator B. The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein PUBMED:11195102. AgrB is involved in the proteolyt
Probab=22.57 E-value=4.5e+02 Score=24.82 Aligned_cols=55 Identities=22% Similarity=0.115 Sum_probs=31.3
Q ss_pred hcccCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHhhccChhh
Q 041036 59 LAVDEPKKVIHGLKVGLAISLVSLFYYMRPLYDGVGGNAMWAVMTVVVVFESSVGA 114 (504)
Q Consensus 59 ~~~~dp~~~~~AlK~glA~~Lasll~~~~~~~~~l~~~~~WAviTvvvV~~psvG~ 114 (504)
..++|-...+|++.+.+...+..++.+..+...+.- ....+.+.+...++...|+
T Consensus 16 ~~~~~~e~~~YGle~il~~l~~~~~~l~i~~~~g~~-~~~li~~~~f~~lR~~aGG 70 (184)
T smart00793 16 LDHIQLLKIKYGLEVILINLIKLIIVYGVALLLGVF-LETLIVHLSFLFLRRFAGG 70 (184)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHhhCCc
Confidence 333444567899999888777776666666655432 2223333333445555554
No 79
>COG4035 Predicted membrane protein [Function unknown]
Probab=22.42 E-value=79 Score=26.90 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=26.1
Q ss_pred cCCCCCchHHH----HHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041036 91 DGVGGNAMWAV----MTVVVVFESSVGATLGKCINRAIGTFLAGSLGVGVHWIA 140 (504)
Q Consensus 91 ~~l~~~~~WAv----iTvvvV~~psvG~Tl~kgl~RilGTliG~~la~~i~~l~ 140 (504)
..++ .+.|.. +..++-|+|.+|.. -|++|.++|+++|..+
T Consensus 62 ~~v~-~~~~~ag~flig~v~gMRPGYGR~---------Etv~Gt~LA~l~wL~~ 105 (108)
T COG4035 62 RSVP-VPLYMAGCFLIGFVLGMRPGYGRV---------ETVVGTFLAVLLWLYF 105 (108)
T ss_pred cCCc-hHHHHHHHHHHHHhhccCCCCcee---------ehhHHHHHHHHHHHhh
Confidence 3445 577876 44455589999863 4667777777776543
No 80
>PF03323 GerA: Bacillus/Clostridium GerA spore germination protein; InterPro: IPR004995 Dormant Bacillus subtilis spores germinate in the presence of particular nutrients called germinants. The spores are thought to recognise germinants through receptor proteins encoded by the gerA family of operons, which includes gerA, gerB, and gerK. The GerA proteins are predicted to be membrane associated.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=22.11 E-value=2.2e+02 Score=31.28 Aligned_cols=63 Identities=17% Similarity=0.277 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhc
Q 041036 122 RAIGTFLAGSLGVGVHWIAFHSGKNLEPIVLGISLFLLASAATFSRFMPTIKARFDYGIMIFILTFSLVSVS 193 (504)
Q Consensus 122 RilGTliG~~la~~i~~l~~~~g~~~~p~~l~l~vfl~~~~~~~~~f~p~~k~~~~Ya~~if~lT~~lV~l~ 193 (504)
+.+|+.+|.+=|+++...+-..|-...+.++. ..++++++|.- ++|+.+..+-++-+.+++++
T Consensus 347 ~~ig~ti~iVGglviGqAaV~AglvS~~~iIv---valtai~sf~~------p~~~~~~~~r~~r~~~i~~a 409 (470)
T PF03323_consen 347 KPIGQTIGIVGGLVIGQAAVQAGLVSPIMIIV---VALTAIASFTI------PNYELSNAIRLLRFFFIILA 409 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcCcceeEe---ehHHHHHhhhc------hhhhhHHHHHHHHHHHHHHH
Confidence 45677777777777776665556432333322 12233455542 44554544445555555544
No 81
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=21.58 E-value=1.5e+03 Score=27.36 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccch
Q 041036 198 DRLLELAQQRLSTIAIGASICIIISMLFCPMWAG 231 (504)
Q Consensus 198 ~~~~~~A~~R~~~i~IGi~iallvs~li~P~~a~ 231 (504)
+..-++...=-..+.+..++++++++++.|.-+.
T Consensus 454 G~~g~~~~~l~~~v~~al~~Sllval~~~P~l~~ 487 (1021)
T PF00873_consen 454 GIAGQFFRPLALTVIIALIASLLVALTLVPALAA 487 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3333444444467788888999999999996443
No 82
>TIGR00828 EIID-AGA PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.
Probab=20.95 E-value=7.9e+02 Score=25.04 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041036 199 RLLELAQQRLSTIAIGASICIIISML 224 (504)
Q Consensus 199 ~~~~~A~~R~~~i~IGi~iallvs~l 224 (504)
+-+.-+..-+..+++|+.+|-.|++=
T Consensus 176 ~~it~~a~ilGl~vvGal~as~V~v~ 201 (271)
T TIGR00828 176 QKLTEGASILGLFVMGALVAKWTHIN 201 (271)
T ss_pred HHHHHHHHHHHHHHHHHHhheeEEEE
Confidence 33566778888999999999888753
No 83
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.88 E-value=6.4e+02 Score=22.93 Aligned_cols=46 Identities=17% Similarity=0.118 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhhcccccchH--HHHHHHHHHHHHHHHHHHHHHHH
Q 041036 209 STIAIGASICIIISMLFCPMWAGD--ELHLLICQNLEKLAHSLDECVVE 255 (504)
Q Consensus 209 ~~i~IGi~iallvs~li~P~~a~~--~L~~~l~~~l~~la~~l~~~~~~ 255 (504)
+..++|++|++++..|- |..... .+...+.+.=..+-+|=+.++.+
T Consensus 13 igLvvGi~IG~li~Rlt-~~~~k~q~~~q~ELe~~K~~ld~~rqel~~H 60 (138)
T COG3105 13 IGLVVGIIIGALIARLT-NRKLKQQQKLQYELEKVKAQLDEYRQELVKH 60 (138)
T ss_pred HHHHHHHHHHHHHHHHc-chhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777643 444444 34444444333333333334433
No 84
>PF04982 HPP: HPP family; InterPro: IPR007065 These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of an alignment of the proteins is a motif HPP. The function of these proteins is uncertain but they may be transporters.
Probab=20.48 E-value=5.9e+02 Score=22.39 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=27.3
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041036 99 WAVMTVVVVFESSVGATLGKCINRAIGTFLAGSLGVGVHWIA 140 (504)
Q Consensus 99 WAviTvvvV~~psvG~Tl~kgl~RilGTliG~~la~~i~~l~ 140 (504)
++..++++...|+.- +.+=.+=+.|.++++++|+++..++
T Consensus 6 ~gAsa~llf~~p~sp--~aqP~~vi~gh~isa~iG~~~~~~~ 45 (120)
T PF04982_consen 6 FGASAVLLFGAPSSP--LAQPRNVIGGHLISALIGVLCVYLF 45 (120)
T ss_pred HHHHHHHhhcCCCCc--hhchHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555522 3455666899999999999998876
No 85
>COG2733 Predicted membrane protein [Function unknown]
Probab=20.40 E-value=41 Score=35.82 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041036 121 NRAIGTFLAGSLGVGVHWIA 140 (504)
Q Consensus 121 ~RilGTliG~~la~~i~~l~ 140 (504)
-|+=||++||++|+++..+.
T Consensus 392 IRiNGtvVGG~~Gllly~I~ 411 (415)
T COG2733 392 IRINGTVVGGIAGLLLYAIS 411 (415)
T ss_pred EeEcCchHHHHHHHHHHHHH
Confidence 37889999999999987664
No 86
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=20.39 E-value=5.6e+02 Score=24.81 Aligned_cols=27 Identities=30% Similarity=0.276 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 041036 66 KVIHGLKVGLAISLVSLFYYMRPLYDG 92 (504)
Q Consensus 66 ~~~~AlK~glA~~Lasll~~~~~~~~~ 92 (504)
..++|+.+.+......++.+..+...+
T Consensus 35 ~i~YGl~~il~~i~k~i~il~i~~i~g 61 (210)
T PRK01100 35 KVKYGLEIILINVSKFAIVYLIALVTG 61 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 468888887777666666666665543
No 87
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=20.32 E-value=7.6e+02 Score=25.04 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 041036 209 STIAIGASICIIISMLFCPM 228 (504)
Q Consensus 209 ~~i~IGi~iallvs~li~P~ 228 (504)
..+.+|+++++++++.+.|.
T Consensus 278 ~~~~~gi~~~~l~~l~llPa 297 (333)
T PF03176_consen 278 LLAAIGILIALLLSLTLLPA 297 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888884
No 88
>COG4291 Predicted membrane protein [Function unknown]
Probab=20.18 E-value=5.1e+02 Score=25.42 Aligned_cols=18 Identities=17% Similarity=0.021 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041036 123 AIGTFLAGSLGVGVHWIA 140 (504)
Q Consensus 123 ilGTliG~~la~~i~~l~ 140 (504)
+.+..+|+++++.+.+..
T Consensus 24 f~~a~lg~vlall~~~~~ 41 (228)
T COG4291 24 FAIAALGGVLALLLALAL 41 (228)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 456778888888776543
Done!