Query 041036
Match_columns 504
No_of_seqs 369 out of 1465
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 04:39:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041036.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041036hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dx5_A Acriflavine resistance 56.3 1.2E+02 0.0039 35.0 14.2 20 209-228 1005-1024(1057)
2 3ne5_A Cation efflux system pr 49.9 83 0.0028 36.2 11.6 21 208-228 1020-1040(1054)
3 4dx5_A Acriflavine resistance 26.8 7.5E+02 0.026 28.1 17.9 20 209-228 472-491 (1057)
4 3aqp_A Probable secdf protein- 20.8 4.9E+02 0.017 28.6 11.2 19 210-228 700-718 (741)
5 3aqp_A Probable secdf protein- 17.6 9.9E+02 0.034 26.1 13.7 20 209-228 401-420 (741)
6 2v50_A Multidrug resistance pr 16.5 1.2E+03 0.04 26.5 14.3 21 209-229 472-492 (1052)
7 3ne5_A Cation efflux system pr 12.9 1.3E+03 0.046 25.9 12.7 26 205-230 483-508 (1054)
8 2zy9_A Mg2+ transporter MGTE; 10.5 3.6E+02 0.012 27.9 6.2 13 124-136 385-397 (473)
9 2v50_A Multidrug resistance pr 9.9 1.6E+03 0.054 25.4 12.0 21 209-229 1003-1023(1052)
10 4gic_A HDH, histidinol dehydro 8.8 3.7E+02 0.013 27.7 5.3 36 339-374 31-66 (423)
No 1
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=56.26 E-value=1.2e+02 Score=35.01 Aligned_cols=20 Identities=15% Similarity=0.504 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 041036 209 STIAIGASICIIISMLFCPM 228 (504)
Q Consensus 209 ~~i~IGi~iallvs~li~P~ 228 (504)
..+++|++++++++.++.|.
T Consensus 1005 ~~~~~Gl~~s~~~tl~~~P~ 1024 (1057)
T 4dx5_A 1005 TGVMGGMVTATVLAIFFVPV 1024 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888885
No 2
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=49.90 E-value=83 Score=36.20 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 041036 208 LSTIAIGASICIIISMLFCPM 228 (504)
Q Consensus 208 ~~~i~IGi~iallvs~li~P~ 228 (504)
-..+++|+++++++++++.|.
T Consensus 1020 ~~~~~~Gl~~s~~~tl~v~P~ 1040 (1054)
T 3ne5_A 1020 AAPMIGGMITAPLLSLFIIPA 1040 (1054)
T ss_dssp THHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 356778888999999999885
No 3
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=26.82 E-value=7.5e+02 Score=28.14 Aligned_cols=20 Identities=15% Similarity=0.516 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 041036 209 STIAIGASICIIISMLFCPM 228 (504)
Q Consensus 209 ~~i~IGi~iallvs~li~P~ 228 (504)
..+++|+++++++++++.|.
T Consensus 472 ~~~~~gl~~s~~~~l~~~P~ 491 (1057)
T 4dx5_A 472 ITIVSAMALSVLVALILTPA 491 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888775
No 4
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=20.83 E-value=4.9e+02 Score=28.65 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhhcccc
Q 041036 210 TIAIGASICIIISMLFCPM 228 (504)
Q Consensus 210 ~i~IGi~iallvs~li~P~ 228 (504)
.+++|++++++.++++.|.
T Consensus 700 ~~~~Gl~~~~~~sl~l~Pa 718 (741)
T 3aqp_A 700 AIFVGIFVGTYSSIYVVSA 718 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777774
No 5
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=17.56 E-value=9.9e+02 Score=26.10 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 041036 209 STIAIGASICIIISMLFCPM 228 (504)
Q Consensus 209 ~~i~IGi~iallvs~li~P~ 228 (504)
..+.+|++++++.++++.|.
T Consensus 401 ~~~~~gi~~s~~~al~~~P~ 420 (741)
T 3aqp_A 401 VILAIGVVASVFSNLVFSRH 420 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888777775
No 6
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=16.53 E-value=1.2e+03 Score=26.50 Aligned_cols=21 Identities=19% Similarity=0.499 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhhccccc
Q 041036 209 STIAIGASICIIISMLFCPMW 229 (504)
Q Consensus 209 ~~i~IGi~iallvs~li~P~~ 229 (504)
..+++|+++++++++++.|.-
T Consensus 472 ~~~~~gl~~s~~~~l~l~P~l 492 (1052)
T 2v50_A 472 ITIVSAMALSVIVALILTPAL 492 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888888853
No 7
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=12.90 E-value=1.3e+03 Score=25.94 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccc
Q 041036 205 QQRLSTIAIGASICIIISMLFCPMWA 230 (504)
Q Consensus 205 ~~R~~~i~IGi~iallvs~li~P~~a 230 (504)
..=-..+++|+++++++++++.|.-.
T Consensus 483 ~~~~~~~~~gl~~s~~~~l~~~P~l~ 508 (1054)
T 3ne5_A 483 GPLAFTKTYAMAGAALLAIVVIPILM 508 (1054)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345677888999999999988643
No 8
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=10.50 E-value=3.6e+02 Score=27.85 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 041036 124 IGTFLAGSLGVGV 136 (504)
Q Consensus 124 lGTliG~~la~~i 136 (504)
+|-+.|.++|+++
T Consensus 385 ~~~~~g~~~~~~~ 397 (473)
T 2zy9_A 385 VGLLLGLTLSFLL 397 (473)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 9
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=9.89 E-value=1.6e+03 Score=25.37 Aligned_cols=21 Identities=10% Similarity=0.501 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhhccccc
Q 041036 209 STIAIGASICIIISMLFCPMW 229 (504)
Q Consensus 209 ~~i~IGi~iallvs~li~P~~ 229 (504)
..+++|++++++++.++.|.-
T Consensus 1003 ~~~~~Gl~~s~~~~l~~~P~l 1023 (1052)
T 2v50_A 1003 TGVIGGMVTATVLAIFWVPLF 1023 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888888863
No 10
>4gic_A HDH, histidinol dehydrogenase; protein structure initiative, STR genomics, PSI-biology, NEW YORK structural genomics researc consortium; 2.05A {Methylococcus capsulatus}
Probab=8.77 E-value=3.7e+02 Score=27.75 Aligned_cols=36 Identities=11% Similarity=0.166 Sum_probs=30.4
Q ss_pred CChhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccc
Q 041036 339 APPHLKRHLNNICMRLSSSSSNVLQELAFALKTMKQ 374 (504)
Q Consensus 339 ~p~~~r~~~~~~~~~l~~e~~~~L~~La~si~~m~~ 374 (504)
..+++....++.++.+-.+..++|+++...+.....
T Consensus 31 ~~~~v~~~V~~Ii~~Vr~~GD~Al~~yt~kFD~~~~ 66 (423)
T 4gic_A 31 EDTDIHQRVTEIIGCIRRDGDAALVELTARFDHFVV 66 (423)
T ss_dssp -CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCC
T ss_pred ChHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCC
Confidence 356778888999999999999999999999987553
Done!