Query 041036
Match_columns 504
No_of_seqs 369 out of 1465
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 04:39:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041036.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041036hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ppjc2 f.21.1.2 (C:15-260) Mi 16.3 1.4E+02 0.01 26.1 7.1 53 62-118 94-148 (246)
2 d1u5ta1 a.4.5.54 (A:20-164) Va 12.2 1.8E+02 0.013 23.4 6.0 24 334-357 32-55 (145)
3 d1tlha_ a.150.1.1 (A:) Anti-si 11.7 86 0.0063 23.2 3.3 29 437-465 7-40 (89)
4 d1otsa_ f.20.1.1 (A:) Clc chlo 10.8 5.5E+02 0.04 23.4 20.3 22 208-229 406-427 (444)
5 d1g5za_ a.24.12.1 (A:) Outer s 10.5 1E+02 0.0076 25.4 3.8 23 447-469 16-38 (164)
6 d3cx5c2 f.21.1.2 (C:1-261) Mit 10.4 2.9E+02 0.021 24.2 7.3 52 63-118 108-163 (261)
7 d2b0ha1 a.24.9.2 (A:1838-1973) 9.6 3E+02 0.022 21.0 6.5 78 315-397 45-125 (136)
8 d1q90b_ f.21.1.2 (B:) Cytochro 9.0 3.4E+02 0.025 23.0 7.0 52 63-118 109-164 (212)
9 d1d0qa_ g.41.3.2 (A:) Zinc-bin 8.4 79 0.0057 23.8 2.1 27 447-473 69-97 (102)
10 d2j3wb1 d.278.1.2 (B:21-188) T 7.8 51 0.0037 27.4 0.7 27 438-464 4-30 (168)
No 1
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.31 E-value=1.4e+02 Score=26.09 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=36.4
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHh--hccChhhHHHH
Q 041036 62 DEPKKVIHGLKVGLAISLVSLFYYMRPLYDGVGGNAMWAVMTVVVV--FESSVGATLGK 118 (504)
Q Consensus 62 ~dp~~~~~AlK~glA~~Lasll~~~~~~~~~l~~~~~WAviTvvvV--~~psvG~Tl~k 118 (504)
..||.+..++=..+.+...+..+|..| ++|.+||+.....=+ .-|-+|..+..
T Consensus 94 ~~~~~w~~G~~l~~l~m~~af~GY~Lp----w~qms~wa~~V~t~l~~~iP~iG~~l~~ 148 (246)
T d1ppjc2 94 TFLETWNIGVILLLTVMATAFMGYVLP----WGQMSFWGATVITNLLSAIPYIGTNLVE 148 (246)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHTT----CBHHHHHHHHHHHGGGGGSTTTHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHeeccCC----CcchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367777777766666677777788766 677899997554433 34777777644
No 2
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.16 E-value=1.8e+02 Score=23.39 Aligned_cols=24 Identities=25% Similarity=0.565 Sum_probs=19.0
Q ss_pred hccCCCChhHHHHHHHHHHHHHhh
Q 041036 334 DSETQAPPHLKRHLNNICMRLSSS 357 (504)
Q Consensus 334 ~~~~q~p~~~r~~~~~~~~~l~~e 357 (504)
.++|.-.+++|..|.+-|..++-.
T Consensus 32 ~~eI~~np~FR~~F~~MC~~iGVD 55 (145)
T d1u5ta1 32 NSELQASPEFRSKFMHMCSSIGID 55 (145)
T ss_dssp TTTTTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHhhcCHHHHHHHHHHHHHhCCC
Confidence 457777888999999999888544
No 3
>d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4 [TaxId: 10665]}
Probab=11.68 E-value=86 Score=23.16 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHH-----HHHHHHHHHHHHHHHHh
Q 041036 437 ILPLATLASLLI-----ENAAKIEVIVNGVNELA 465 (504)
Q Consensus 437 ~~~~~~~~sll~-----e~v~~~~~~~~~~~el~ 465 (504)
+.-.+|.||+|| |+|.+=++.++=..||+
T Consensus 7 v~eIit~aSiLIK~~~edI~~~q~~FI~FLNE~G 40 (89)
T d1tlha_ 7 VREIITVASILIKFSREDIVENRANFIAFLNEIG 40 (89)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccHHHHHHhHHHHHHHHHHhC
Confidence 445789999999 67888888888888875
No 4
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=10.78 E-value=5.5e+02 Score=23.44 Aligned_cols=22 Identities=5% Similarity=-0.078 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhhccccc
Q 041036 208 LSTIAIGASICIIISMLFCPMW 229 (504)
Q Consensus 208 ~~~i~IGi~iallvs~li~P~~ 229 (504)
+.-+++.+++|..++.++.+..
T Consensus 406 ~~p~~ia~~~a~~v~~~~~~~s 427 (444)
T d1otsa_ 406 ILPMIITGLGATLLAQFTGGKP 427 (444)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCC
Confidence 3567788888888888887644
No 5
>d1g5za_ a.24.12.1 (A:) Outer surface protein C (OspC) {Lyme disease spirochete (Borrelia burgdorferi), different strains [TaxId: 139]}
Probab=10.54 E-value=1e+02 Score=25.36 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC
Q 041036 447 LIENAAKIEVIVNGVNELAVLAE 469 (504)
Q Consensus 447 l~e~v~~~~~~~~~~~el~~~a~ 469 (504)
...-|.-+|-++.+++|||.+|=
T Consensus 16 fv~aVKEVetLv~SIDELA~KAI 38 (164)
T d1g5za_ 16 VVLAVKEVETLLASIDELATKAI 38 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 34568889999999999997764
No 6
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.35 E-value=2.9e+02 Score=24.20 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=34.2
Q ss_pred Cchh--HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHh--hccChhhHHHH
Q 041036 63 EPKK--VIHGLKVGLAISLVSLFYYMRPLYDGVGGNAMWAVMTVVVV--FESSVGATLGK 118 (504)
Q Consensus 63 dp~~--~~~AlK~glA~~Lasll~~~~~~~~~l~~~~~WAviTvvvV--~~psvG~Tl~k 118 (504)
.||+ +.-++=..+.+...+..+|..| ++|.+||+....-=+ .-|-+|..+..
T Consensus 108 ~pre~~W~~Gv~l~~l~~~~af~GY~Lp----w~q~s~w~~~Vit~l~~~iP~vG~~lv~ 163 (261)
T d3cx5c2 108 SPRVTLWNVGVIIFILTIATAFLGYCCV----YGQMSHWGATVITNLFSAIPFVGNDIVS 163 (261)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHH----CBHHHHHHHHHHHHGGGGSTTTHHHHHH
T ss_pred CccchhHHhhHHHHHHHHHHHHhhhhcC----CCcchhhHHHHHHHHHHhcCcCchhhhh
Confidence 5655 5667666666677777788776 677899997544333 34666666544
No 7
>d2b0ha1 a.24.9.2 (A:1838-1973) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.56 E-value=3e+02 Score=21.04 Aligned_cols=78 Identities=8% Similarity=0.081 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhhhchhc--cCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCccC-ChhhHHHHHHH
Q 041036 315 IGASIRNCAYCIETLHGCVDS--ETQAPPHLKRHLNNICMRLSSSSSNVLQELAFALKTMKQSSKINL-SVGEMNFAVQE 391 (504)
Q Consensus 315 l~~~lr~~a~~i~aL~~~l~~--~~q~p~~~r~~~~~~~~~l~~e~~~~L~~La~si~~m~~~~~~~~-~~~~~~~A~~~ 391 (504)
++...+.++..+..|-.+... .....++.+..+.+....++..+.+++..-...-.+ | .|. ....+.++.+.
T Consensus 45 L~~~a~~~a~~~~~L~~~~k~~A~~~~~~~~q~~ll~~ak~v~~s~~~Lv~aak~~~~n----P-~d~~~~~~L~~aAr~ 119 (136)
T d2b0ha1 45 LGPLANQLTSDYGRLASQAKPAAVAAENEEIGAHIKHRVQELGHGCSALVTKAGALQCS----P-SDVYTKKELIECARR 119 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----T-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----C-CcHHHHHHHHHHHHH
Confidence 555666666666666655432 122245677788888888888887777665444331 1 122 12456666555
Q ss_pred HHHHHh
Q 041036 392 LKHALI 397 (504)
Q Consensus 392 L~~~i~ 397 (504)
+...+.
T Consensus 120 V~esv~ 125 (136)
T d2b0ha1 120 VSEKVS 125 (136)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 8
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=9.04 E-value=3.4e+02 Score=22.95 Aligned_cols=52 Identities=21% Similarity=0.299 Sum_probs=32.2
Q ss_pred Cchh--HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHhh--ccChhhHHHH
Q 041036 63 EPKK--VIHGLKVGLAISLVSLFYYMRPLYDGVGGNAMWAVMTVVVVF--ESSVGATLGK 118 (504)
Q Consensus 63 dp~~--~~~AlK~glA~~Lasll~~~~~~~~~l~~~~~WAviTvvvV~--~psvG~Tl~k 118 (504)
.||+ +.-++=..+.+...+..+|..| ++|.+|||.....-.+ -|-+|.++..
T Consensus 109 ~pre~~W~~Gv~l~~l~m~~aftGY~Lp----w~q~sywa~~V~~~l~~~iP~iG~~l~~ 164 (212)
T d1q90b_ 109 RPRELTWVTGVIMAVCTVSFGVTGYSLP----WDQVGYWAVKIVTGVPDAIPGVGGFIVE 164 (212)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHTT----CBHHHHHHHHHHHHGGGGSTTHHHHHHH
T ss_pred CcccceehHhHHHHHHHHHHHHhhhhcc----hhhHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 4553 4455555555566666677755 6778999876554443 4666766543
No 9
>d1d0qa_ g.41.3.2 (A:) Zinc-binding domain of DNA primase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=8.37 E-value=79 Score=23.75 Aligned_cols=27 Identities=26% Similarity=0.192 Sum_probs=20.3
Q ss_pred HHHHHHHHHHH--HHHHHHHhhccCCCCC
Q 041036 447 LIENAAKIEVI--VNGVNELAVLAEFKPT 473 (504)
Q Consensus 447 l~e~v~~~~~~--~~~~~el~~~a~f~~~ 473 (504)
.|++|.+++++ .||+++||+.++..-+
T Consensus 69 ~i~fv~~~~~~sf~eAv~~La~~~gi~l~ 97 (102)
T d1d0qa_ 69 AFTFLMDIEGIPFVEAAKRLAAKAGVDLS 97 (102)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHTCCCG
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHhCCCCC
Confidence 45666677764 7999999999987544
No 10
>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]}
Probab=7.77 E-value=51 Score=27.40 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041036 438 LPLATLASLLIENAAKIEVIVNGVNEL 464 (504)
Q Consensus 438 ~~~~~~~sll~e~v~~~~~~~~~~~el 464 (504)
+|+.+|+-|..|+|.....-++.++|+
T Consensus 4 Vs~s~f~~L~~ElV~y~~~~~~~~~e~ 30 (168)
T d2j3wb1 4 VSVSAFALLFSEMVQYCQSRVYSVSEL 30 (168)
T ss_dssp EEHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred hCHHHHHHHHHHHHHHHHhccCCHHHH
Done!