Query 041039
Match_columns 271
No_of_seqs 237 out of 1014
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 04:42:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041039.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041039hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 99.5 1.3E-12 4.3E-17 112.8 16.2 110 161-271 76-194 (194)
2 1rpq_W Peptide E131; receptor- 12.5 61 0.0021 17.8 0.5 9 206-214 1-9 (26)
3 1rzh_L Reaction center protein 8.9 4.2E+02 0.014 23.4 4.9 29 192-224 6-39 (281)
4 2fnj_C Transcription elongatio 5.7 3.1E+02 0.011 19.5 2.2 21 193-213 75-95 (96)
5 4djk_A Probable glutamate/gamm 4.8 1.6E+03 0.056 19.8 7.9 10 191-200 399-408 (511)
6 3jtz_A Integrase; four strande 4.3 3.9E+02 0.013 18.9 1.8 30 180-210 4-33 (88)
7 4euw_A Transcription factor SO 3.9 5E+02 0.017 18.7 2.2 16 244-259 82-97 (106)
8 3f27_D Transcription factor SO 3.8 6.2E+02 0.021 16.9 2.6 17 244-260 59-75 (83)
9 2y8t_A Apical membrane antigen 3.8 2.5E+02 0.0086 26.3 0.5 15 191-211 48-62 (432)
10 2ket_A Cathelicidin-6; antimic 3.7 84 0.0029 17.4 -1.7 19 250-268 4-22 (27)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=99.47 E-value=1.3e-12 Score=112.76 Aligned_cols=110 Identities=13% Similarity=0.125 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHh-ccc--CCCccccccccCcccccccccchhHHHHHHHHHHHhhhHHHHHH--HH
Q 041039 161 DLKFVGIILFCLGISGNFYHHYLLSR-MRR--NGEKEYRIPTGGLFDKVVCPHYLFELIEFWGIFFISQTLYAFCN--AL 235 (271)
Q Consensus 161 ~~~~~g~~lf~~g~~~n~~~~~~L~~-LR~--~~~~~y~iP~gglF~~Vs~PnY~~Eil~w~g~al~~~~~~~~~~--~~ 235 (271)
...++|+++++.|......+|.+|.+ ++. +.+++.++.+.|+|++++||||+||+++|+|++++++++.+++. ..
T Consensus 76 ~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s~~~~~~~~~~ 155 (194)
T 4a2n_B 76 SIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWVVLIFGIVA 155 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45789999999999999999999954 443 23567889999999999999999999999999999988766542 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhc----ccCCCCcceeccccC
Q 041039 236 GVTFYLMGRSYITRTWYLCKF----EHFPKHVKALFPYIF 271 (271)
Q Consensus 236 ~~~~~l~~rA~~~h~wY~~kF----~~Yp~~RkalIPfI~ 271 (271)
++.. +..|+...+++.+++| +||.++.+++||+|.
T Consensus 156 ~~~~-~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~r~iP~i~ 194 (194)
T 4a2n_B 156 WAIL-YFIRVPKEEELLIEEFGDEYIEYMGKTGRLFPKVV 194 (194)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHHHHHHHHCBSSSCC--
T ss_pred HHHH-HHHHHHHHHHHHHHHhCHHHHHHHHhCCeeCceeC
Confidence 3333 3456666666677766 467778889999974
No 2
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=12.51 E-value=61 Score=17.82 Aligned_cols=9 Identities=56% Similarity=1.453 Sum_probs=6.5
Q ss_pred cccccchhH
Q 041039 206 VVCPHYLFE 214 (271)
Q Consensus 206 Vs~PnY~~E 214 (271)
|.|||+-.|
T Consensus 1 vqcphfcye 9 (26)
T 1rpq_W 1 VQCPHFCYE 9 (26)
T ss_dssp CCCCTHHHH
T ss_pred CCCCeeeee
Confidence 568887766
No 3
>1rzh_L Reaction center protein L chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: f.26.1.1 PDB: 1rvj_L* 1ry5_L* 1rzz_L* 1s00_L* 2j8c_L* 1aig_L* 1ds8_L* 1dv3_L* 1dv6_L* 1e14_L* 1e6d_L* 1jgw_L* 1jgx_L* 1jgy_L* 1jgz_L* 1k6l_L* 1kby_L* 1l9b_L* 1l9j_L* 1m3x_L* ...
Probab=8.93 E-value=4.2e+02 Score=23.37 Aligned_cols=29 Identities=45% Similarity=0.879 Sum_probs=20.8
Q ss_pred Cccccccc-----cCcccccccccchhHHHHHHHHHHH
Q 041039 192 EKEYRIPT-----GGLFDKVVCPHYLFELIEFWGIFFI 224 (271)
Q Consensus 192 ~~~y~iP~-----gglF~~Vs~PnY~~Eil~w~g~al~ 224 (271)
|+||+++. |.+|+....|=|+| |+|...+
T Consensus 6 e~~yr~r~~tl~gg~~~d~~~GpiYlG----~fGv~s~ 39 (281)
T 1rzh_L 6 ERKYRVPGGTLVGGNLFDFWVGPFYVG----FFGVATF 39 (281)
T ss_dssp TGGGCCSCCCSSSTTTTCCEETTEECH----HHHHHHH
T ss_pred hhhhhccCceeecccccccEEcCEEEe----hHHHHHH
Confidence 56677665 46999999999986 4555443
No 4
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=5.67 E-value=3.1e+02 Score=19.54 Aligned_cols=21 Identities=14% Similarity=0.282 Sum_probs=17.6
Q ss_pred ccccccccCcccccccccchh
Q 041039 193 KEYRIPTGGLFDKVVCPHYLF 213 (271)
Q Consensus 193 ~~y~iP~gglF~~Vs~PnY~~ 213 (271)
...+++++-+|+.+..+||+.
T Consensus 75 ~~w~vd~~~l~eLi~AAnyLd 95 (96)
T 2fnj_C 75 PEFPIAPEIALELLMAANFLD 95 (96)
T ss_dssp CCCCCCTTTHHHHHHHHHHHT
T ss_pred CCcccCHHHHHHHHHHHHHhC
Confidence 345799999999999999973
No 5
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=4.81 E-value=1.6e+03 Score=19.81 Aligned_cols=10 Identities=30% Similarity=0.730 Sum_probs=5.8
Q ss_pred CCcccccccc
Q 041039 191 GEKEYRIPTG 200 (271)
Q Consensus 191 ~~~~y~iP~g 200 (271)
.++.+++|.|
T Consensus 399 ~~~~~~~~~~ 408 (511)
T 4djk_A 399 LKRTFNIPGG 408 (511)
T ss_dssp CCCSCCCSST
T ss_pred CCCCeecCCC
Confidence 4456777644
No 6
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=4.30 E-value=3.9e+02 Score=18.89 Aligned_cols=30 Identities=10% Similarity=0.226 Sum_probs=18.9
Q ss_pred HHHHHHhcccCCCccccccccCccccccccc
Q 041039 180 HHYLLSRMRRNGEKEYRIPTGGLFDKVVCPH 210 (271)
Q Consensus 180 ~~~~L~~LR~~~~~~y~iP~gglF~~Vs~Pn 210 (271)
+|.++++++ +.++.|++.+|+.+.....|+
T Consensus 4 T~~~i~~~k-p~~k~~~~~Dg~GL~L~V~ps 33 (88)
T 3jtz_A 4 TDAKIRTLK-PSDKPFKVSDSHGLYLLVKPG 33 (88)
T ss_dssp CHHHHHHCC-CCSSCEEEECSTTEEEEECTT
T ss_pred CHHHHhcCC-CCCCcEEEecCCceEEEEecC
Confidence 466777885 346778888875554444453
No 7
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=3.87 E-value=5e+02 Score=18.68 Aligned_cols=16 Identities=6% Similarity=-0.093 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhcccC
Q 041039 244 RSYITRTWYLCKFEHF 259 (271)
Q Consensus 244 rA~~~h~wY~~kF~~Y 259 (271)
.|....+-|.++.++|
T Consensus 82 ~A~~~k~~y~~e~~~Y 97 (106)
T 4euw_A 82 EAERLRVQHKKDHPDY 97 (106)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhhhc
Confidence 3555667788888877
No 8
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=3.81 E-value=6.2e+02 Score=16.87 Aligned_cols=17 Identities=6% Similarity=0.020 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhcccCC
Q 041039 244 RSYITRTWYLCKFEHFP 260 (271)
Q Consensus 244 rA~~~h~wY~~kF~~Yp 260 (271)
.|....+-|.++.++|.
T Consensus 59 ~A~~~k~~y~~~~~~Yk 75 (83)
T 3f27_D 59 EAERLRVQHMQDHPNYK 75 (83)
T ss_dssp HHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHCCCCe
Confidence 35556677888888773
No 9
>2y8t_A Apical membrane antigen, putative; membrane protein, moving junction, invasion; HET: NAG; 1.95A {Toxoplasma gondii} PDB: 2y8r_A* 2y8s_A* 2x2z_A*
Probab=3.79 E-value=2.5e+02 Score=26.32 Aligned_cols=15 Identities=40% Similarity=0.977 Sum_probs=11.0
Q ss_pred CCccccccccCcccccccccc
Q 041039 191 GEKEYRIPTGGLFDKVVCPHY 211 (271)
Q Consensus 191 ~~~~y~iP~gglF~~Vs~PnY 211 (271)
++++|+||.| +||||
T Consensus 48 g~~~YRiP~G------kCPv~ 62 (432)
T 2y8t_A 48 DGTLYREPAG------LCPIW 62 (432)
T ss_dssp TTEEEEECCC------SSCEE
T ss_pred cCccccccCC------CCCcc
Confidence 3568999976 67776
No 10
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=3.68 E-value=84 Score=17.41 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=9.5
Q ss_pred HHHHHhcccCCCCcceecc
Q 041039 250 TWYLCKFEHFPKHVKALFP 268 (271)
Q Consensus 250 ~wY~~kF~~Yp~~RkalIP 268 (271)
+.+++||++--++-..+||
T Consensus 4 krfrkkfkklfkklspvip 22 (27)
T 2ket_A 4 KRFRKKFKKLFKKLSPVIP 22 (27)
T ss_dssp HHHHHHHHHHHHHHSCSCH
T ss_pred HHHHHHHHHHHHhcCcccc
Confidence 3456666543333444555
Done!