Query 041039
Match_columns 271
No_of_seqs 237 out of 1014
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 04:42:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041039.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041039hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j8cl1 f.26.1.1 (L:1-281) L ( 6.0 3.3E+02 0.024 21.9 4.9 22 192-213 6-32 (281)
2 d2c9wc1 d.42.1.1 (C:17-112) El 5.2 72 0.0053 21.3 0.2 20 193-212 75-94 (96)
3 d1hv2a_ d.42.1.1 (A:) Elongin 4.1 1.7E+02 0.013 19.2 1.6 45 168-212 53-97 (99)
4 d1utaa_ d.58.52.1 (A:) Cell di 3.9 1.4E+02 0.01 18.6 0.9 30 180-209 19-48 (77)
5 d1j46a_ a.21.1.1 (A:) SRY {Hum 3.3 3.9E+02 0.028 16.6 2.9 17 244-260 57-73 (85)
6 d1j32a_ c.67.1.1 (A:) Aspartat 3.2 3.4E+02 0.024 21.6 3.1 20 192-211 312-331 (388)
7 d1v54m_ f.23.7.1 (M:) Mitochon 3.2 4.2E+02 0.031 15.1 2.5 12 250-261 31-42 (43)
8 d1xmea1 f.24.1.1 (A:14-562) Ba 3.1 4.6E+02 0.034 22.8 4.0 38 161-198 130-167 (549)
9 d3e46a1 a.5.2.1 (A:157-198) Ub 3.1 1.5E+02 0.011 16.7 0.3 11 206-216 1-11 (42)
10 d2gola1 a.61.1.1 (A:7-107) HIV 3.0 1.6E+02 0.012 20.2 0.5 17 183-199 11-27 (101)
No 1
>d2j8cl1 f.26.1.1 (L:1-281) L (light) subunit {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.03 E-value=3.3e+02 Score=21.88 Aligned_cols=22 Identities=50% Similarity=0.904 Sum_probs=17.5
Q ss_pred Cccccccc-----cCcccccccccchh
Q 041039 192 EKEYRIPT-----GGLFDKVVCPHYLF 213 (271)
Q Consensus 192 ~~~y~iP~-----gglF~~Vs~PnY~~ 213 (271)
|++|++|. |.+|+.=..|=|+|
T Consensus 6 Er~yrv~ggtl~gg~lfd~wvGPiYlG 32 (281)
T d2j8cl1 6 ERKYRVPGGTLVGGNLFDFWVGPFYVG 32 (281)
T ss_dssp CGGGCCSCCCSSSTTTTCCEETTEECH
T ss_pred cccccCCCCceecccccccccCCEEee
Confidence 56677765 45999999999998
No 2
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.21 E-value=72 Score=21.32 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=16.2
Q ss_pred ccccccccCcccccccccch
Q 041039 193 KEYRIPTGGLFDKVVCPHYL 212 (271)
Q Consensus 193 ~~y~iP~gglF~~Vs~PnY~ 212 (271)
....||+.-+|+.+..+||+
T Consensus 75 ~~fdi~~~~l~eLi~AAnyL 94 (96)
T d2c9wc1 75 PEFPIAPEIALELLMAANFL 94 (96)
T ss_dssp CCCCCCHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHhhh
Confidence 35668888889998888886
No 3
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.08 E-value=1.7e+02 Score=19.21 Aligned_cols=45 Identities=22% Similarity=0.191 Sum_probs=24.1
Q ss_pred HHHHHHHHhHHHHHHHHHhcccCCCccccccccCcccccccccch
Q 041039 168 ILFCLGISGNFYHHYLLSRMRRNGEKEYRIPTGGLFDKVVCPHYL 212 (271)
Q Consensus 168 ~lf~~g~~~n~~~~~~L~~LR~~~~~~y~iP~gglF~~Vs~PnY~ 212 (271)
+|=.+-.+.+++.+....+=.++.-....+++.-+|+.+..+||+
T Consensus 53 iL~kViey~~~h~~~~~~~~~~~~~~efdvd~~~l~eLi~AAnyL 97 (99)
T d1hv2a_ 53 ILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYL 97 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCSSCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhCcCcccccccCCCCCCCHHHHHHHHHHHhhh
Confidence 333333444554444332211111234567778888888888886
No 4
>d1utaa_ d.58.52.1 (A:) Cell division protein FtsN {Escherichia coli [TaxId: 562]}
Probab=3.92 E-value=1.4e+02 Score=18.63 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=19.9
Q ss_pred HHHHHHhcccCCCccccccccCcccccccc
Q 041039 180 HHYLLSRMRRNGEKEYRIPTGGLFDKVVCP 209 (271)
Q Consensus 180 ~~~~L~~LR~~~~~~y~iP~gglF~~Vs~P 209 (271)
++....+|++.|-..+..+.+++|+-...|
T Consensus 19 A~~l~~~L~~~g~~~~i~~~~~~yRV~vGp 48 (77)
T d1utaa_ 19 AETVRAQLAFEGFDSKITTNNGWNRVVIGP 48 (77)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSSEEEEESS
T ss_pred HHHHHHHHHhcCCcceecCCCcEEEEEECC
Confidence 345556666666566667778888876666
No 5
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.29 E-value=3.9e+02 Score=16.63 Aligned_cols=17 Identities=6% Similarity=0.073 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhcccCC
Q 041039 244 RSYITRTWYLCKFEHFP 260 (271)
Q Consensus 244 rA~~~h~wY~~kF~~Yp 260 (271)
.|...++-|.+++++|.
T Consensus 57 ~A~~~k~~y~~~~~~yk 73 (85)
T d1j46a_ 57 EAQKLQAMHREKYPNYK 73 (85)
T ss_dssp HHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHhHHhc
Confidence 45566778888888774
No 6
>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}
Probab=3.25 E-value=3.4e+02 Score=21.65 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=15.6
Q ss_pred CccccccccCcccccccccc
Q 041039 192 EKEYRIPTGGLFDKVVCPHY 211 (271)
Q Consensus 192 ~~~y~iP~gglF~~Vs~PnY 211 (271)
......|+||.|-++.+|+-
T Consensus 312 g~~~~~p~gg~~l~~~l~~~ 331 (388)
T d1j32a_ 312 GLECPKPDGAFYMFPSIAKT 331 (388)
T ss_dssp TCBCCCCCBTTEECCBCGGG
T ss_pred CCEecCCCceEEEEEECCCC
Confidence 34556789999999998864
No 7
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.17 E-value=4.2e+02 Score=15.10 Aligned_cols=12 Identities=25% Similarity=0.825 Sum_probs=6.2
Q ss_pred HHHHHhcccCCC
Q 041039 250 TWYLCKFEHFPK 261 (271)
Q Consensus 250 ~wY~~kF~~Yp~ 261 (271)
-|-..+.++|+|
T Consensus 31 GwVLshLe~YKk 42 (43)
T d1v54m_ 31 GWVLYHLDNYKK 42 (43)
T ss_dssp HHHHHTHHHHHT
T ss_pred HHHHHHHHHhcc
Confidence 344555555544
No 8
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=3.08 E-value=4.6e+02 Score=22.77 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCcccccc
Q 041039 161 DLKFVGIILFCLGISGNFYHHYLLSRMRRNGEKEYRIP 198 (271)
Q Consensus 161 ~~~~~g~~lf~~g~~~n~~~~~~L~~LR~~~~~~y~iP 198 (271)
+..++|++++++|.......-....+.|+++.+..++|
T Consensus 130 ~~~~ig~~l~vv~~~~~i~~~~t~~~~r~~~~~~~~~P 167 (549)
T d1xmea1 130 WAFYLGASVFVLSTWVSIYIVLDLWRRWKAANPGKVTP 167 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTCCCC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhccCCCCcccch
Confidence 35678999998887655444444456666655555554
No 9
>d3e46a1 a.5.2.1 (A:157-198) Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.08 E-value=1.5e+02 Score=16.70 Aligned_cols=11 Identities=27% Similarity=0.455 Sum_probs=7.5
Q ss_pred cccccchhHHH
Q 041039 206 VVCPHYLFELI 216 (271)
Q Consensus 206 Vs~PnY~~Eil 216 (271)
||+|.|...|=
T Consensus 1 vsspeyt~kid 11 (42)
T d3e46a1 1 VSSPEYTKKIE 11 (42)
T ss_dssp CCCHHHHHHHH
T ss_pred CCchHHHHHHH
Confidence 56777777663
No 10
>d2gola1 a.61.1.1 (A:7-107) HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=2.98 E-value=1.6e+02 Score=20.20 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=12.5
Q ss_pred HHHhcccCCCccccccc
Q 041039 183 LLSRMRRNGEKEYRIPT 199 (271)
Q Consensus 183 ~L~~LR~~~~~~y~iP~ 199 (271)
.-.+||+.|.++|++-+
T Consensus 11 EkirLrpggKKkY~lKH 27 (101)
T d2gola1 11 EKIRLRPGGKKQYKLKH 27 (101)
T ss_dssp HHCBSSTTCSCBCCHHH
T ss_pred heeeecCCCCcchhhhh
Confidence 34578888888888754
Done!