BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041042
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 87/170 (51%), Gaps = 6/170 (3%)
Query: 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEV 139
+L LK+ LLGD +GK+S + ++V D + +P G + M KT+ + + IW+
Sbjct: 2 SLRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 61
Query: 140 TGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFD 198
G + + P+ + S A + ++D+T T ++ W ++ R+ +I + I G K D
Sbjct: 62 AGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 121
Query: 199 DFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248
D++ + A+ YA +++A +SA IN+N++ I+ ++
Sbjct: 122 -----LTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Query: 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVT 140
L LK+ LLGD +GK+S + ++V D + +P G + M KT+ + + IW+
Sbjct: 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 63
Query: 141 GDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFDD 199
G + + P+ + S A + ++D+T T ++ W ++ R+ +I + I G K D
Sbjct: 64 GLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD- 122
Query: 200 FIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248
D++ + A+ YA +++A +SA IN+N++ I+ ++
Sbjct: 123 ----LTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 86/168 (51%), Gaps = 10/168 (5%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
LK+ LLGD +GK+S + ++V D + SP G + M KT+ + IW+ G
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFD--DF 200
+ P+ + S A + ++D+T + + ++ +W ++ ++ I + I G K D D
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 201 IQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248
++P+ A+ YA+++ A + +SA IN+ ++ + I+ ++
Sbjct: 144 REVPL-------KDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 8/166 (4%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
+KI L+GD +GK+ L ++V D+ G++ KT+ + G ++ IW+ G
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARK-CNQTAIPIIIGTKFDDFIQ 202
+ + + ++ I+ ++D+T T ++ +W++ + N A +++G K D
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD---- 119
Query: 203 LPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248
++ + A Q A AK L SSA + NVN+I F AKL
Sbjct: 120 --METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF-FTLAKL 162
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 8/166 (4%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
+KI L+GD +GK+ L ++V D+ G++ KT+ + G ++ +W+ G
Sbjct: 8 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARK-CNQTAIPIIIGTKFDDFIQ 202
+ + + ++ I+ ++D+T T ++ +W++ + N A +++G K D
Sbjct: 68 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD---- 123
Query: 203 LPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248
++ + A Q A AK L SSA + NVN+I F AKL
Sbjct: 124 --METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF-FTLAKL 166
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 80/160 (50%), Gaps = 6/160 (3%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGD 142
+ K+ LLG+ +GKTS + +Y ++ G + + K L + G R++ +IW+ G
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 143 AKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFDDFI 201
+ P+ +DS + ++D+T + + V W ++ RK I + I+G K D
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 125
Query: 202 QLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKIL 241
+ + +Q +A +YA+++ A + +SA N + ++
Sbjct: 126 ERHVSIQ-----EAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 87/180 (48%), Gaps = 10/180 (5%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
+KI L+GD +GK+ L ++V D+ G++ KT+ + G ++ +W+ G
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARK-CNQTAIPIIIGTKFDDFIQ 202
+ + + ++ I+ ++D+T T ++ +W++ + N A +++G K D
Sbjct: 81 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD---- 136
Query: 203 LPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIPWTLERNLTIG 262
++ + A Q A AK L SSA + NVN+I F AKL I ++ N +G
Sbjct: 137 --METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF-FTLAKL--IQEKIDSNKLVG 191
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 8/165 (4%)
Query: 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK 144
KI L+GD +GK+ L ++V D+ G++ KT+ + G ++ IW+ G +
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 145 AQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARK-CNQTAIPIIIGTKFDDFIQL 203
+ + + I+ ++D+T T ++ +W++ + N A +++G K D
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD----- 119
Query: 204 PIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248
+ + A Q A AK L SSA + NVN+I F AKL
Sbjct: 120 -XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF-FTLAKL 162
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 10/171 (5%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ L+GD +GK++ L ++ +E G+ +++ V G I IW+ G
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFD--DF 200
+ + + ++ L ++D+ T ++V RW ++ R + I I ++G K D
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125
Query: 201 IQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDI 251
+P D +ARA+A+ N + +SA + NV + K I +++ I
Sbjct: 126 RAVPTD-------EARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 169
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 6/169 (3%)
Query: 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVT 140
L K+ LG+ +GKTS + +++ D + G++ + KT+ + I +W+
Sbjct: 4 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 63
Query: 141 GDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQAR-KCNQTAIPIIIGTKFDD 199
G + + +P +DS A + ++D+T+ + + +W R + I +++G K D
Sbjct: 64 GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD- 122
Query: 200 FIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248
L Q +I R AK LN +SA NV ++ + + A L
Sbjct: 123 ---LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAAL 167
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 83/179 (46%), Gaps = 6/179 (3%)
Query: 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVT 140
L K+ LG+ +GKTS + +++ D + G++ + KT+ + I +W+
Sbjct: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 70
Query: 141 GDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQAR-KCNQTAIPIIIGTKFDD 199
G + + +P +DS A + ++D+T+ + + +W R + I +++G K D
Sbjct: 71 GLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD- 129
Query: 200 FIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIPWTLERN 258
L Q +I R AK LN +SA NV ++ + + A L + T +R+
Sbjct: 130 ---LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRS 184
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 79/160 (49%), Gaps = 6/160 (3%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGD 142
+ K+ LLG+ +GKTS + +Y ++ + + K L + G R++ +IW+ G
Sbjct: 20 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 79
Query: 143 AKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFDDFI 201
+ P+ +DS + ++D+T + + V W ++ RK I + I+G K D
Sbjct: 80 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 139
Query: 202 QLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKIL 241
+ + +Q +A +YA+++ A + +SA N + ++
Sbjct: 140 ERHVSIQ-----EAESYAESVGAKHYHTSAKQNKGIEELF 174
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 8/165 (4%)
Query: 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK 144
KI L+GD +GK+ L ++V D+ G++ KT+ + G ++ +W+ G +
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 145 AQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARK-CNQTAIPIIIGTKFDDFIQL 203
+ + + I+ ++D+T T ++ +W++ + N A +++G K D
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD----- 119
Query: 204 PIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248
+ + A Q A AK L SSA + NVN+I F AKL
Sbjct: 120 -XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF-FTLAKL 162
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 79/160 (49%), Gaps = 6/160 (3%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGD 142
+ K+ LLG+ +GKTS + +Y ++ + + K L + G R++ +IW+ G
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 143 AKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFDDFI 201
+ P+ +DS + ++D+T + + V W ++ RK I + I+G K D
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 125
Query: 202 QLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKIL 241
+ + +Q +A +YA+++ A + +SA N + ++
Sbjct: 126 ERHVSIQ-----EAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 10/167 (5%)
Query: 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK 144
K+ LLGD GK+S + ++V D+ + G +TL V A + + IW+ G +
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 145 AQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQAR-KCNQTAIPIIIGTKFDDFIQL 203
P+ + + A + +FD+T++ + + +W Q+ + + N + + G K D
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSD----- 128
Query: 204 PIDLQWTIASQARAYAKALNATLFF--SSATYNINVNKILKFITAKL 248
+D + A A+ YA+ LFF +SA NV +I I +L
Sbjct: 129 LLDARKVTAEDAQTYAQ--ENGLFFMETSAKTATNVKEIFYEIARRL 173
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 86/188 (45%), Gaps = 9/188 (4%)
Query: 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVT 140
L K+ LG+ +GKTS + +++ D + G++ + KT+ + + +W+
Sbjct: 4 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 63
Query: 141 GDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQAR-KCNQTAIPIIIGTKFDD 199
G + + +P +DS + ++D+T+ + + +W R + I +++G K D
Sbjct: 64 GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD- 122
Query: 200 FIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIPWTLERNL 259
L Q +I R AK LN +SA NV ++ + + A L + T +R+
Sbjct: 123 ---LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSR 178
Query: 260 TIGEPIID 267
E +ID
Sbjct: 179 ---EDMID 183
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 82/179 (45%), Gaps = 6/179 (3%)
Query: 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVT 140
L K+ LG+ +GKTS + +++ D + G++ + KT+ + + +W+
Sbjct: 14 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 73
Query: 141 GDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQAR-KCNQTAIPIIIGTKFDD 199
G + + +P +DS + ++D+T+ + + +W R + I +++G K D
Sbjct: 74 GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD- 132
Query: 200 FIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIPWTLERN 258
L Q +I R AK LN +SA NV ++ + + A L + T +R+
Sbjct: 133 ---LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRS 187
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 76/166 (45%), Gaps = 6/166 (3%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ LG+ +GKTS + +++ D + G++ + KT+ + + +W+ G
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQAR-KCNQTAIPIIIGTKFDDFIQ 202
+ + +P +DS + ++D+T+ + + +W R + I +++G K D
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD---- 117
Query: 203 LPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248
L Q +I R AK LN +SA NV ++ + + A L
Sbjct: 118 LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAAL 162
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 6/160 (3%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ L+G+ +GKTSFL +Y D G++ KT+ RI IW+ G
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCN-QTAIPIIIGTKFDDFIQ 202
+ + + ++ L M+D+ ++ + +V W Q + + A I++G K D
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCD---- 138
Query: 203 LPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILK 242
D + A R A L F +SA NINV ++ +
Sbjct: 139 -LEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFE 177
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 19/186 (10%)
Query: 58 GLVPGTTVRPSLCHSHRHLDADNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEG 117
GLVP + RP AD L++ ++G +GKTS +E++ D + G
Sbjct: 13 GLVPRGSPRP----------AD--FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVG 60
Query: 118 LNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRW 177
++ KT+ +RG +I IW+ G + + + I+ ++D+T + T + +W
Sbjct: 61 VDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKW 120
Query: 178 YQQARK-CNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLF-FSSATYNI 235
+ K ++ A +++G K D I Q Q +A+ + F +SA N
Sbjct: 121 MKMIDKYASEDAELLLVGNKLDCETDREITRQ-----QGEKFAQQITGMRFCEASAKDNF 175
Query: 236 NVNKIL 241
NV++I
Sbjct: 176 NVDEIF 181
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 78/171 (45%), Gaps = 10/171 (5%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ L+GD +GK++ L ++ +E G+ +++ V G I IW+ G
Sbjct: 21 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFD--DF 200
+ + + ++ L ++D+ T ++V RW ++ R + I I ++G K D
Sbjct: 81 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 140
Query: 201 IQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDI 251
+P D +ARA+A+ + +SA + NV + I +++ I
Sbjct: 141 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 74/169 (43%), Gaps = 6/169 (3%)
Query: 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVT 140
L K+ LG+ +GKTS + +++ D + G++ + KT+ + + +W+
Sbjct: 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 71
Query: 141 GDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQAR-KCNQTAIPIIIGTKFDD 199
G + + +P +DS + ++D+T+ + +W R + I +++G K D
Sbjct: 72 GQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTD- 130
Query: 200 FIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248
D + + AK LN +SA NV ++ + + A L
Sbjct: 131 ----LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 6/160 (3%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
KI ++G+ +GKTSFL +Y D G++ KT+ RI IW+ G
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCN-QTAIPIIIGTKFDDFIQ 202
+ + + ++ + M+D+T+ + +V W Q + + A +++G K D
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD---- 121
Query: 203 LPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILK 242
D + + + R A L F +SA NINV + +
Sbjct: 122 -MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 160
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 81/178 (45%), Gaps = 12/178 (6%)
Query: 68 SLCHSHRHLDADNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLV 127
S+ + HL K+ ++GD +GK+S L ++ + G++ +T+ +
Sbjct: 1 SMARDYDHL-------FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI 53
Query: 128 RGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQT 187
G ++ IW+ G + + + + ++ ++D+TS + +V RW + +
Sbjct: 54 NGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDD 113
Query: 188 AIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFIT 245
I++G K DD + ++ + A +A + LF +SA N+NV ++ IT
Sbjct: 114 VCRILVGNKNDDPERKVVETE-----DAYKFAGQMGIQLFETSAKENVNVEEMFNCIT 166
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 77/169 (45%), Gaps = 10/169 (5%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ L+GD +GK++ L ++ +E G+ +++ V G I IW+ G
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFD--DF 200
+ + + ++ L ++D+ T ++V RW ++ R + I I ++G K D
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 201 IQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLF 249
+P D +ARA+A+ + +SA + NV + I +++
Sbjct: 150 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 77/168 (45%), Gaps = 6/168 (3%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ LG+ +GKTS + +++ D + G++ + KT+ + + +W+ G
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQAR-KCNQTAIPIIIGTKFDDFIQ 202
+ + +P +DS + ++D+T+ + + +W R + I +++G K D
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTD---- 118
Query: 203 LPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFD 250
L Q TI + AK L+ +SA NV ++ + + + L +
Sbjct: 119 LADKRQITI-EEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 75/165 (45%), Gaps = 6/165 (3%)
Query: 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK 144
K+ LG+ +GKTS + ++ D + G++ + KTL + + +W+ G +
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 145 AQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQA-RKCNQTAIPIIIGTKFDDFIQL 203
+ +P +DS A + ++D+T+R + ++ +W Q + + I ++G K D
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTD----- 117
Query: 204 PIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248
DL+ + A+ N +SA N+ + K +KL
Sbjct: 118 LGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 78/171 (45%), Gaps = 10/171 (5%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ L+GD +GK++ L ++ +E G+ +++ V G I IW+ G
Sbjct: 9 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFD--DF 200
+ + + ++ L ++D+ T ++V RW ++ R + I I ++G K D
Sbjct: 69 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 128
Query: 201 IQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDI 251
+P D +ARA+A+ + +SA + NV + I +++ I
Sbjct: 129 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 81/167 (48%), Gaps = 8/167 (4%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ LLG+ +GK+S + ++V + + G + +T+ + + + IW+ G
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFDDFIQ 202
+ P+ + + A + ++D+T+ + W ++ R+ + + + G K D +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 203 LPIDLQWTIASQARAYAKALNATLFF-SSATYNINVNKILKFITAKL 248
+D Q +A++YA N+ LF +SA ++NVN+I I KL
Sbjct: 127 RAVDFQ-----EAQSYADD-NSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 81/167 (48%), Gaps = 8/167 (4%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ LLG+ +GK+S + ++V + + G + +T+ + + + IW+ G
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFDDFIQ 202
+ P+ + + A + ++D+T+ + W ++ R+ + + + G K D +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 203 LPIDLQWTIASQARAYAKALNATLFF-SSATYNINVNKILKFITAKL 248
+D Q +A++YA N+ LF +SA ++NVN+I I KL
Sbjct: 127 RAVDFQ-----EAQSYADD-NSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 77/169 (45%), Gaps = 10/169 (5%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ L+GD +GK++ L ++ +E G+ +++ V G I IW+ G
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFD--DF 200
+ + + ++ L ++D+ T ++V RW ++ R + I I ++G K D
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 201 IQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLF 249
+P D +ARA+A+ + +SA + NV + I +++
Sbjct: 150 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 81/167 (48%), Gaps = 8/167 (4%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ LLG+ +GK+S + ++V + + G + +T+ + + + IW+ G
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFDDFIQ 202
+ P+ + + A + ++D+T+ + W ++ R+ + + + G K D +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 203 LPIDLQWTIASQARAYAKALNATLFF-SSATYNINVNKILKFITAKL 248
+D Q +A++YA N+ LF +SA ++NVN+I I KL
Sbjct: 127 RAVDFQ-----EAQSYADD-NSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 23/189 (12%)
Query: 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141
V K+ L+GD GKT+F+++++ E E+ P G+ + I +++W+ G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 142 DAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIII-GTKFDD 199
K + + MFD+TSR T K+V W++ R C IPI++ G K D
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--IPIVLCGNKVD- 125
Query: 200 FIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIPWTLERNL 259
I+ + +++ + + N + SA N N K ++ KL
Sbjct: 126 -IK-----DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL----------- 168
Query: 260 TIGEPIIDF 268
IG+P ++F
Sbjct: 169 -IGDPNLEF 176
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 77/169 (45%), Gaps = 10/169 (5%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ L+GD +GK++ L ++ +E G+ +++ V G I IW+ G
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFD--DF 200
+ + + ++ L ++D+ T ++V RW ++ R + I I ++G K D
Sbjct: 66 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 125
Query: 201 IQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLF 249
+P D +ARA+A+ + +SA + NV + I +++
Sbjct: 126 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 77/169 (45%), Gaps = 10/169 (5%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ L+GD +GK++ L ++ +E G+ +++ V G I IW+ G
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFD--DF 200
+ + + ++ L ++D+ T ++V RW ++ R + I I ++G K D
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 131
Query: 201 IQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLF 249
+P D +ARA+A+ + +SA + NV + I +++
Sbjct: 132 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 80/167 (47%), Gaps = 8/167 (4%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ LLG+ +GK+S + ++V + + G + +T+ + + + IW+ G
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFDDFIQ 202
+ P+ + + A + ++D+T+ T W ++ R+ + + + G K D +
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 203 LPIDLQWTIASQARAYAKALNATLFF-SSATYNINVNKILKFITAKL 248
++ Q +A+AYA N+ LF +SA +NVN+I I KL
Sbjct: 124 RAVEFQ-----EAQAYADD-NSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 81/167 (48%), Gaps = 8/167 (4%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ LLG+ +GK+S + ++V + + G + +T+ + + + IW+ G
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFDDFIQ 202
+ P+ + + A + ++D+T+ + W ++ R+ + + + G K D +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 203 LPIDLQWTIASQARAYAKALNATLFF-SSATYNINVNKILKFITAKL 248
+D Q +A++YA N+ LF +SA ++NVN+I I KL
Sbjct: 127 RAVDFQ-----EAQSYADD-NSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 23/189 (12%)
Query: 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141
V K+ L+GD GKT+F+++++ E E+ P G+ + I +++W+ G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 142 DAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIII-GTKFDD 199
K + + MFD+TSR T K+V W++ R C IPI++ G K D
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--IPIVLCGNKVD- 125
Query: 200 FIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIPWTLERNL 259
I+ + +++ + + N + SA N N K ++ KL
Sbjct: 126 -IK-----DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL----------- 168
Query: 260 TIGEPIIDF 268
IG+P ++F
Sbjct: 169 -IGDPNLEF 176
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 81/167 (48%), Gaps = 8/167 (4%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ LLG+ +GK+S + ++V + + G + +T+ + + + IW+ G
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFDDFIQ 202
+ P+ + + A + ++D+T+ + W ++ R+ + + + G K D +
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 203 LPIDLQWTIASQARAYAKALNATLFF-SSATYNINVNKILKFITAKL 248
+D Q +A++YA N+ LF +SA ++NVN+I I KL
Sbjct: 128 RAVDFQ-----EAQSYADD-NSLLFMETSAKTSMNVNEIFMAIAKKL 168
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 81/167 (48%), Gaps = 8/167 (4%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ LLG+ +GK+S + ++V + + G + +T+ + + + IW+ G
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFDDFIQ 202
+ P+ + + A + ++D+T+ + W ++ R+ + + + G K D +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 203 LPIDLQWTIASQARAYAKALNATLFF-SSATYNINVNKILKFITAKL 248
+D Q +A++YA N+ LF +SA ++NVN+I I KL
Sbjct: 127 RAVDFQ-----EAQSYADD-NSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 81/167 (48%), Gaps = 8/167 (4%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ LLG+ +GK+S + ++V + + G + +T+ + + + IW+ G
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFDDFIQ 202
+ P+ + + A + ++D+T+ + W ++ R+ + + + G K D +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 203 LPIDLQWTIASQARAYAKALNATLFF-SSATYNINVNKILKFITAKL 248
+D Q +A++YA N+ LF +SA ++NVN+I I KL
Sbjct: 127 RAVDFQ-----EAQSYADD-NSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 17/175 (9%)
Query: 77 DADNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLL--VRGA---- 130
D D +K+ LGD +GKT+FL +Y ++ G++ +K ++ +GA
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 131 ----RISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQ 186
++ +W+ G + + +D++ L MFDLTS+ + +V W Q +
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 124
Query: 187 TAIP--IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239
P ++IG K D LP D + QAR A+ F +SA NV K
Sbjct: 125 CENPDIVLIGNKAD----LP-DQREVNERQARELAEKYGIPYFETSAATGQNVEK 174
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 80/167 (47%), Gaps = 8/167 (4%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ LLG+ +GK+S + ++V + + G + +T+ + + + IW+ G
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFDDFIQ 202
+ P+ + + A + ++D+T+ T W ++ R+ + + + G K D +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 203 LPIDLQWTIASQARAYAKALNATLFF-SSATYNINVNKILKFITAKL 248
++ Q +A+AYA N+ LF +SA +NVN+I I KL
Sbjct: 126 RAVEFQ-----EAQAYADD-NSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 17/182 (9%)
Query: 75 HLDADNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISY 134
H++ N V K+ L+G+ +GKT+ L ++ +E G+ +T+++ A +
Sbjct: 3 HMEDYNFV-FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKA 61
Query: 135 SIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIII 193
IW+ G + + + ++ L +FDLT T V RW ++ T + +++
Sbjct: 62 QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV 121
Query: 194 GTKFD--DFIQLPIDLQWTIASQARAYAKALNATLFF-SSATYNINV----NKILKFITA 246
G K D ++P + +AR +A+ N LF +SA + NV +LK I A
Sbjct: 122 GNKSDLSQAREVPTE-------EARMFAEN-NGLLFLETSALDSTNVELAFETVLKEIFA 173
Query: 247 KL 248
K+
Sbjct: 174 KV 175
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 81/167 (48%), Gaps = 8/167 (4%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ LLG+ +GK+S + ++V + + G + +T+ + + + IW+ G
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFDDFIQ 202
+ P+ + + A + ++D+T+ + W ++ R+ + + + G K D +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 203 LPIDLQWTIASQARAYAKALNATLFF-SSATYNINVNKILKFITAKL 248
+D Q +A++YA N+ LF +SA ++NVN+I I KL
Sbjct: 126 RAVDFQ-----EAQSYADD-NSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 12/143 (8%)
Query: 58 GLVPGTTVRPSLCHSHRHLDADNLVALKISLLGDCHIGKTSFLEKY-VGDEKEQGGSPGE 116
GLVP + P D K+ L+GD +GKT ++++ G E+ GS
Sbjct: 13 GLVPRGSGDP---------DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGST-I 62
Query: 117 GLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIR 176
G++ KTL ++G R+ IW+ G + + + + + +D+T R + SV
Sbjct: 63 GVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPH 122
Query: 177 WYQQARK-CNQTAIPIIIGTKFD 198
W + RK + ++IG K D
Sbjct: 123 WIEDVRKYAGSNIVQLLIGNKSD 145
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGD 142
A KI L GD +GK+SFL + +E + S G++ KTL+V G R +W+ G
Sbjct: 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87
Query: 143 AKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFD 198
+ + + + +L ++D+T + ++ W +PI ++G K D
Sbjct: 88 ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKAD 144
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 10/189 (5%)
Query: 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141
V LK+ +LGD +GKTS + +YV + G + + K ++V ++ IW+ G
Sbjct: 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 142 DAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQ----QARKCNQTAIP-IIIGTK 196
+ Q + + + +FD+T+ T K++ W QA + P +++G K
Sbjct: 67 QERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 197 FDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIPWTLE 256
D L T +QA Y+K N F +SA INV + + I +E
Sbjct: 127 ID----LENRQVATKRAQAWCYSKN-NIPYFETSAKEAINVEQAFQTIARNALKQETEVE 181
Query: 257 RNLTIGEPI 265
EPI
Sbjct: 182 LYNEFPEPI 190
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 79/167 (47%), Gaps = 8/167 (4%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ LLG+ +GK+S + ++V + + G + +T+ + + + IW+ G
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFDDFIQ 202
+ P + + A + ++D+T+ + W ++ R+ + + + G K D +
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 203 LPIDLQWTIASQARAYAKALNATLFF-SSATYNINVNKILKFITAKL 248
+D Q +A++YA N+ LF +SA + NVN+I I KL
Sbjct: 128 RAVDFQ-----EAQSYADD-NSLLFXETSAKTSXNVNEIFXAIAKKL 168
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 17/178 (9%)
Query: 77 DADNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLL--VRGA---- 130
D D +K+ LGD +GKT+FL +Y ++ G++ +K ++ +GA
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 131 ----RISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQ 186
++ +W+ G + + +D++ L MFDLTS+ + +V W Q +
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 124
Query: 187 TAIP--IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILK 242
P ++IG K D LP D + QAR A+ F +SA NV K ++
Sbjct: 125 CENPDIVLIGNKAD----LP-DQREVNERQARELAEKYGIPYFETSAATGQNVEKSVE 177
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 19/178 (10%)
Query: 77 DADNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLV--------- 127
D D L+ K+ LGD +GKT+FL +Y ++ G++ +K ++
Sbjct: 21 DYDYLI--KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSS 78
Query: 128 -RGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQ 186
+ ++ +W+ G + + +D++ L MFDLTS+ + +V W Q +
Sbjct: 79 GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 138
Query: 187 TAIP--IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILK 242
P ++IG K D LP D + QAR A F +SA NV K ++
Sbjct: 139 CENPDIVLIGNKAD----LP-DQREVNERQARELADKYGIPYFETSAATGQNVEKAVE 191
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 10/189 (5%)
Query: 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141
V LK+ +LGD +GKTS + +YV + G + + K ++V ++ IW+ G
Sbjct: 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 142 DAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQ----QARKCNQTAIP-IIIGTK 196
+ Q + + + +FD+T+ T K++ W QA + P +++G K
Sbjct: 67 QERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 197 FDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIPWTLE 256
DF + T +QA Y+K N F +SA INV + + I +E
Sbjct: 127 I-DFENRQVA---TKRAQAWCYSKN-NIPYFETSAKEAINVEQAFQTIARNALKQETEVE 181
Query: 257 RNLTIGEPI 265
EPI
Sbjct: 182 LYNEFPEPI 190
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 33/194 (17%)
Query: 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141
V K+ L+GD GKT+F+++++ E E+ G+ + I +++W+ G
Sbjct: 14 VQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 73
Query: 142 DAKAQDHLPVACKDSIAI-----LFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIII-G 194
K +D I + MFD+TSR T K+V W++ R C IPI++ G
Sbjct: 74 QEKFG-----GLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--IPIVLCG 126
Query: 195 TKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIPWT 254
K D I+ + +++ + + N + SA N N K ++ KL
Sbjct: 127 NKVD--IK-----DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL------ 173
Query: 255 LERNLTIGEPIIDF 268
IG+P ++F
Sbjct: 174 ------IGDPNLEF 181
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 10/168 (5%)
Query: 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141
V LK+ +LGD +GKTS + +YV + G + + K ++V ++ IW+ G
Sbjct: 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 142 DAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQ----QARKCNQTAIP-IIIGTK 196
+ Q + + + +FD+T+ T K++ W QA + P +++G K
Sbjct: 67 QERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 197 FDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFI 244
D L T +QA Y+K N F +SA INV + + I
Sbjct: 127 ID----LENRQVATKRAQAWCYSKN-NIPYFETSAKEAINVEQAFQTI 169
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
KI ++G+ +GKTSFL +Y D G++ KT+ RI IW+ G
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCN-QTAIPIIIGTKFDDFIQ 202
+ + + + + +D+T+ + +V W Q + + A +++G K D
Sbjct: 69 RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD---- 124
Query: 203 LPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILK 242
D + + + R A L F +SA NINV + +
Sbjct: 125 -XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 163
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 10/189 (5%)
Query: 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141
V LK+ +LGD +GKTS + +YV + G + + K ++V ++ IW+ G
Sbjct: 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 142 DAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQ----QARKCNQTAIP-IIIGTK 196
+ Q + + + +FD+T+ T K++ W QA + P +++G K
Sbjct: 67 LERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 197 FDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIPWTLE 256
D L T +QA Y+K N F +SA INV + + I +E
Sbjct: 127 ID----LENRQVATKRAQAWCYSKN-NIPYFETSAKEAINVEQAFQTIARNALKQETEVE 181
Query: 257 RNLTIGEPI 265
EPI
Sbjct: 182 LYNEFPEPI 190
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 79/167 (47%), Gaps = 8/167 (4%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ LLG+ +GK+S + ++V + + + +T+ + + + IW+ G
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFDDFIQ 202
+ P+ + + A + ++D+T+ T W ++ R+ + + + G K D +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 203 LPIDLQWTIASQARAYAKALNATLFF-SSATYNINVNKILKFITAKL 248
++ Q +A+AYA N+ LF +SA +NVN+I I KL
Sbjct: 126 RAVEFQ-----EAQAYADD-NSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 23/189 (12%)
Query: 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141
V K+ L+GD GKT+F+++++ E E+ G+ + I +++W+ G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 142 DAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIII-GTKFDD 199
K + + MFD+TSR T K+V W++ R C IPI++ G K D
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--IPIVLCGNKVD- 125
Query: 200 FIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIPWTLERNL 259
I+ + +++ + + N + SA N N K ++ KL
Sbjct: 126 -IK-----DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL----------- 168
Query: 260 TIGEPIIDF 268
IG+P ++F
Sbjct: 169 -IGDPNLEF 176
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 23/189 (12%)
Query: 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141
V K+ L+GD GKT+F+++++ E E+ G+ + I +++W+ G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 142 DAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIII-GTKFDD 199
K + + MFD+TSR T K+V W++ R C IPI++ G K D
Sbjct: 69 QEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--IPIVLCGNKVD- 125
Query: 200 FIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIPWTLERNL 259
I+ + +++ + + N + SA N N K ++ KL
Sbjct: 126 -IK-----DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL----------- 168
Query: 260 TIGEPIIDF 268
IG+P ++F
Sbjct: 169 -IGDPNLEF 176
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 23/189 (12%)
Query: 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141
V K+ L+GD GKT+F+++++ E E+ G+ + I +++W+ G
Sbjct: 2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 61
Query: 142 DAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIII-GTKFDD 199
K + + MFD+TSR T K+V W++ R C IPI++ G K D
Sbjct: 62 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--IPIVLCGNKVD- 118
Query: 200 FIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIPWTLERNL 259
I+ + +++ + + N + SA N N K ++ KL
Sbjct: 119 -IK-----DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL----------- 161
Query: 260 TIGEPIIDF 268
IG+P ++F
Sbjct: 162 -IGDPNLEF 169
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 5/162 (3%)
Query: 75 HLDADNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISY 134
H+D + V KI ++GD GKT+ L + D + P N + + RI
Sbjct: 20 HMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIEL 78
Query: 135 SIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVI-RWYQQARK-CNQTAIPII 192
S+W+ +G + P++ DS A+L FD++ TL SV+ +W + ++ C T + ++
Sbjct: 79 SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKM-LL 137
Query: 193 IGTKFDDFIQLPIDLQWTIASQAR-AYAKALNATLFFSSATY 233
+G K D + ++ + Q +Y + N +ATY
Sbjct: 138 VGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY 179
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 87/192 (45%), Gaps = 29/192 (15%)
Query: 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141
V K+ L+GD GKT+F+++++ E E+ G+ + I +++W+ G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 142 DAK---AQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIII-GTK 196
K +D + + +I MFD+TSR T K+V W++ R C IPI++ G K
Sbjct: 69 QEKFGGLEDGYYIQAQCAI---IMFDVTSRVTYKNVPNWHRDLVRVCEN--IPIVLCGNK 123
Query: 197 FDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIPWTLE 256
D I+ + +++ + + N + SA N N K ++ KL
Sbjct: 124 VD--IK-----DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL-------- 168
Query: 257 RNLTIGEPIIDF 268
IG+P ++F
Sbjct: 169 ----IGDPNLEF 176
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 23/189 (12%)
Query: 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141
V K+ L+GD GKT+F+++++ E E+ G+ + I +++W+ G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 142 DAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIII-GTKFDD 199
K + + MFD+TSR T K+V W++ R C IPI++ G K D
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--IPIVLCGNKVD- 125
Query: 200 FIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIPWTLERNL 259
I+ + +++ + + N + SA N N K ++ KL
Sbjct: 126 -IK-----DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL----------- 168
Query: 260 TIGEPIIDF 268
IG+P ++F
Sbjct: 169 -IGDPNLEF 176
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 23/189 (12%)
Query: 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141
V K+ L+GD GKT+F+++++ E E+ G+ + I +++W+ G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 142 DAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIII-GTKFDD 199
K + + MFD+TSR T K+V W++ R C IPI++ G K D
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--IPIVLCGNKVD- 125
Query: 200 FIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIPWTLERNL 259
I+ + +++ + + N + SA N N K ++ KL
Sbjct: 126 -IK-----DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL----------- 168
Query: 260 TIGEPIIDF 268
IG+P ++F
Sbjct: 169 -IGDPNLEF 176
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ L+G+ +GKT+ L ++ +E G+ +T+++ A + IW+ G
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFD--DF 200
+ + + ++ L +FDLT T V RW ++ T + +++G K D
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145
Query: 201 IQLPIDLQWTIASQARAYAKALNATLFF-SSATYNINV----NKILKFITAKL 248
++P + +AR +A+ N LF +SA + NV +LK I AK+
Sbjct: 146 REVPTE-------EARMFAEN-NGLLFLETSALDSTNVELAFETVLKEIFAKV 190
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 33/194 (17%)
Query: 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141
V K+ L+GD GKT+F+++++ E E+ G+ + I +++W+ G
Sbjct: 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 73
Query: 142 DAKAQDHLPVACKDSIAI-----LFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIII-G 194
K +D I + MFD+TSR T K+V W++ R C IPI++ G
Sbjct: 74 QEKFG-----GLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--IPIVLCG 126
Query: 195 TKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIPWT 254
K D I+ + +++ + + N + SA N N K ++ KL
Sbjct: 127 NKVD--IK-----DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL------ 173
Query: 255 LERNLTIGEPIIDF 268
IG+P ++F
Sbjct: 174 ------IGDPNLEF 181
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
KI L+GD +GK++ L ++ +E G+ +TL + G RI IW+ G
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFD 198
+ + + ++ L ++D++ + ++ W + R+ + + +IG K D
Sbjct: 74 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSD 129
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 15/170 (8%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARI-SYSIWEVTGD 142
LK+ +LGD +GKTS + +YV D+ Q G + + K + V G ++ + +W+ G
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 143 AKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ----ARKCNQTAIP-IIIGTKF 197
+ Q + + + ++D+T+ + +++ W + A + P +I+G K
Sbjct: 69 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128
Query: 198 DDFIQLPIDLQWTIASQ--ARAYAKAL-NATLFFSSATYNINVNKILKFI 244
D + I S+ A+ AK+L + LF +SA INV+ + I
Sbjct: 129 D------AEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 172
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 19/169 (11%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
KI ++GD ++GKT ++ G++ ++ + + G RI +W+ G
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 144 KAQDHLPVACKDSI-AILFMFDLTSRCTLKSVIRWYQQARKCNQ----TAIP-IIIGTKF 197
+ + + ++ A++F++D+T+ + S+ W ++ C Q IP I++G K
Sbjct: 81 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEE---CKQHLLANDIPRILVGNKC 137
Query: 198 D--DFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFI 244
D IQ+P DL A+ +A + LF +SA N N N ++ I
Sbjct: 138 DLRSAIQVPTDL-------AQKFADTHSMPLFETSAK-NPNDNDHVEAI 178
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 77 DADNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSI 136
D D L LKI ++G+ +GK+S L ++ D + + G++ KT+ V G + +I
Sbjct: 9 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 68
Query: 137 WEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARK-CNQTAI-PIIIG 194
W+ G + + P + + ++ ++D+T R T + W + C + I ++G
Sbjct: 69 WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVG 128
Query: 195 TKFD 198
K D
Sbjct: 129 NKID 132
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 88/184 (47%), Gaps = 11/184 (5%)
Query: 78 ADNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIW 137
A + K+ LLG+ +GK+S + ++V + + G + +++ + + + IW
Sbjct: 3 ASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIW 62
Query: 138 EVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTK 196
+ G + P+ + + A + ++D+T++ T W ++ R+ + + + + G K
Sbjct: 63 DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNK 122
Query: 197 FDDFIQLPIDLQWTIASQARAYAKALNATLFF-SSATYNINVNKILKFITAKLFDIPWTL 255
D + ++ + +A+AYA N+ LF +SA +NVN + I KL P +
Sbjct: 123 ADLANKRMVEYE-----EAQAYADD-NSLLFMETSAKTAMNVNDLFLAIAKKL---PKSE 173
Query: 256 ERNL 259
+NL
Sbjct: 174 PQNL 177
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 23/189 (12%)
Query: 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141
V K+ L+GD GKT+F+++++ E E+ G+ + I +++W+ G
Sbjct: 5 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 64
Query: 142 DAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIII-GTKFDD 199
K + + MFD+TSR T K+V W++ R C IPI++ G K D
Sbjct: 65 LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--IPIVLCGNKVD- 121
Query: 200 FIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIPWTLERNL 259
I+ + +++ + + N + SA N N K ++ KL
Sbjct: 122 -IK-----DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL----------- 164
Query: 260 TIGEPIIDF 268
IG+P ++F
Sbjct: 165 -IGDPNLEF 172
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 76/166 (45%), Gaps = 6/166 (3%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
KI L+G+ +GKT + ++ G G++ M KT+ + G ++ IW+ G
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARK-CNQTAIPIIIGTKFDDFIQ 202
+ + + + A++ +D+T + + + W ++ + + I +++G K D +
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146
Query: 203 LPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248
+ Q +A +++A + +SA + NV K+ + +L
Sbjct: 147 REVSQQ-----RAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ ++G+ +GKTSFL +Y D G++ KT+ R+ IW+ G
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCN-QTAIPIIIGTKFDDFIQ 202
+ + + ++ + M+D+T+ + +V W Q + + A I++G K D
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCD---- 139
Query: 203 LPIDLQWTIASQ-ARAYAKALNATLFFSSATYNINVNKILK 242
++ + + ++ + A+ L F +SA NI+V + +
Sbjct: 140 --MEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE 178
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 21/176 (11%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
KI ++GD ++GKT ++ G++ ++ + + G RI +W+ G
Sbjct: 30 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 144 KAQDHLPVACKDSI-AILFMFDLTSRCTLKSVIRWYQQARKCNQ----TAIP-IIIGTKF 197
+ + + ++ A++F++D T+ + S+ W ++ C Q IP I++G K
Sbjct: 90 RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEE---CKQHLLANDIPRILVGNKC 146
Query: 198 D--DFIQLPIDLQWTIASQARAYAKALNATLFFSSATY---NINVNKILKFITAKL 248
D IQ+P DL A+ +A + LF +SA N +V I + KL
Sbjct: 147 DLRSAIQVPTDL-------AQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 23/189 (12%)
Query: 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141
V K+ L+GD GKT+F+++++ E E+ G+ + I +++W+ G
Sbjct: 11 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 70
Query: 142 DAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIII-GTKFDD 199
K + + MFD+TSR T K+V W++ R C IPI++ G K D
Sbjct: 71 LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--IPIVLCGNKVD- 127
Query: 200 FIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIPWTLERNL 259
I+ + +++ + + N + SA N N K ++ KL
Sbjct: 128 -IK-----DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL----------- 170
Query: 260 TIGEPIIDF 268
IG+P ++F
Sbjct: 171 -IGDPNLEF 178
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 17/178 (9%)
Query: 77 DADNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLL--VRGA---- 130
D D +K+ LGD +GKT+FL +Y ++ G++ +K ++ +GA
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 131 ----RISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQ 186
++ +W+ G + + +D+ L FDLTS+ + +V W Q +
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAY 124
Query: 187 TAIP--IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILK 242
P ++IG K D LP D + QAR A+ F +SA NV K ++
Sbjct: 125 CENPDIVLIGNKAD----LP-DQREVNERQARELAEKYGIPYFETSAATGQNVEKSVE 177
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 23/189 (12%)
Query: 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141
V K+ L+GD GKT+F+++++ E E+ G+ + I +++W+ G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 142 DAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIII-GTKFDD 199
K + + MFD+TSR T K+V W++ R C IPI++ G K D
Sbjct: 69 LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--IPIVLCGNKVD- 125
Query: 200 FIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIPWTLERNL 259
I+ + +++ + + N + SA N N K ++ KL
Sbjct: 126 -IK-----DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL----------- 168
Query: 260 TIGEPIIDF 268
IG+P ++F
Sbjct: 169 -IGDPNLEF 176
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 11/172 (6%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGD 142
K+ L+GD GKT+F+++++ E E+ G+ + + I + +W+ G
Sbjct: 5 TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 64
Query: 143 AKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIII-GTKFDDF 200
K ++ + MFD+TSR T K+V W++ R C IPI++ G K D
Sbjct: 65 EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN--IPIVLCGNKVD-- 120
Query: 201 IQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIP 252
+ + ++ + + N + SA N N K ++ KL P
Sbjct: 121 -----VKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNP 167
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 11/172 (6%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGD 142
K+ L+GD GKT+F+++++ E E+ G+ + + I + +W+ G
Sbjct: 4 TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 63
Query: 143 AKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIII-GTKFDDF 200
K ++ + MFD+TSR T K+V W++ R C IPI++ G K D
Sbjct: 64 EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN--IPIVLCGNKVD-- 119
Query: 201 IQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIP 252
+ + ++ + + N + SA N N K ++ KL P
Sbjct: 120 -----VKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNP 166
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 17/178 (9%)
Query: 77 DADNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLL--VRGA---- 130
D D +K+ LGD +GKT+FL +Y ++ G++ +K ++ +GA
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 131 ----RISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQ 186
++ +W+ G + + +D+ L FDLTS+ + +V W Q +
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAY 124
Query: 187 TAIP--IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILK 242
P ++IG K D LP D + QAR A+ F +SA NV K ++
Sbjct: 125 CENPDIVLIGNKAD----LP-DQREVNERQARELAEKYGIPYFETSAATGQNVEKSVE 177
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGE-----GLNMMDKTLLVRGARISYSI 136
VA K+ L+GD +GKT L ++ K+ G G++ +K L V G ++ +
Sbjct: 9 VAFKVMLVGDSGVGKTCLLVRF----KDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM 64
Query: 137 WEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGT 195
W+ G + + +D+ A+L ++D+T++ + ++ W + + Q + + ++G
Sbjct: 65 WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGN 124
Query: 196 KFD 198
K D
Sbjct: 125 KVD 127
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 11/171 (6%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ L+GD GKT+F+++++ E E+ G+ + + I + +W+ G
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIII-GTKFDDFI 201
K ++ + MFD+TSR T K+V W++ R C IPI++ G K D
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN--IPIVLCGNKVD--- 127
Query: 202 QLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIP 252
+ + ++ + + N + SA N N K ++ KL P
Sbjct: 128 ----VKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNP 174
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 23/189 (12%)
Query: 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141
V K+ L+GD GKT+F+++++ E E+ G+ + I +++W+ G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 142 DAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIII-GTKFDD 199
K + + FD+TSR T K+V W++ R C IPI++ G K D
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCEN--IPIVLCGNKVD- 125
Query: 200 FIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIPWTLERNL 259
I+ + +++ + + N + SA N N K ++ KL
Sbjct: 126 -IK-----DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL----------- 168
Query: 260 TIGEPIIDF 268
IG+P ++F
Sbjct: 169 -IGDPNLEF 176
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 17/180 (9%)
Query: 77 DADNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVR-------- 128
D D +K LGD +GKTS L +Y + G++ +K ++ R
Sbjct: 5 DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAV 64
Query: 129 --GARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQ 186
G RI +W+ G + + +D++ L +FDLT+ + +V W Q +
Sbjct: 65 GRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY 124
Query: 187 TAIPIII--GTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFI 244
+ P I+ G K D Q + + +AR A+ F +SA N++ ++ +
Sbjct: 125 SENPDIVLCGNKSDLEDQRAVKEE-----EARELAEKYGIPYFETSAANGTNISHAIEML 179
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARI-SYSIWEVTGD 142
KI L+GD +GK++ L ++ DE G+ K++ ++ +I IW+ G
Sbjct: 8 FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 143 AKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFD 198
+ + + ++ L ++D+T + + +++ +W ++ R + I I ++G K D
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSD 124
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 76/170 (44%), Gaps = 5/170 (2%)
Query: 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVT 140
+ ++K+ LLG+ +GK+S + ++V ++ + P G + + + + + + IW+
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60
Query: 141 GDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFDD 199
G + P +++ A L ++D+T + W ++ + ++ I ++G K D
Sbjct: 61 GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKID- 119
Query: 200 FIQLPIDLQWTIASQARAYAKALNATLFF-SSATYNINVNKILKFITAKL 248
L + +A + LFF +SA NVN + I K+
Sbjct: 120 --XLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 76/166 (45%), Gaps = 6/166 (3%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ L+GD +GK+ L ++ D + G++ +T+ + G I IW+ G
Sbjct: 26 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFDDFIQ 202
+ + + + I+ ++D+T + + +V +W Q+ R ++ +++G K D +
Sbjct: 86 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 145
Query: 203 LPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248
+D + A+ +A +L +SA NV + + A++
Sbjct: 146 KVVDY-----TTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 76 LDADNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYS 135
+D + V KI ++GD GKT+ L + D + P N + + RI S
Sbjct: 16 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELS 74
Query: 136 IWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVI-RWYQQARK-CNQTAIPIII 193
+W+ +G + P++ DS A+L FD++ TL SV+ +W + ++ C T + +++
Sbjct: 75 LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKM-LLV 133
Query: 194 GTKFD 198
G K D
Sbjct: 134 GCKSD 138
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 76/166 (45%), Gaps = 6/166 (3%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ L+GD +GK+ L ++ D + G++ +T+ + G I IW+ G
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFDDFIQ 202
+ + + + I+ ++D+T + + +V +W Q+ R ++ +++G K D +
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 203 LPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248
+D + A+ +A +L +SA NV + + A++
Sbjct: 127 KVVDY-----TTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 76/166 (45%), Gaps = 6/166 (3%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ L+GD +GK+ L ++ D + G++ +T+ + G I IW+ G
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFDDFIQ 202
+ + + + I+ ++D+T + + +V +W Q+ R ++ +++G K D +
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 203 LPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248
+D + A+ +A +L +SA NV + + A++
Sbjct: 127 KVVDY-----TTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 76/166 (45%), Gaps = 6/166 (3%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ L+GD +GK+ L ++ D + G++ +T+ + G I IW+ G
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFDDFIQ 202
+ + + + I+ ++D+T + + +V +W Q+ R ++ +++G K D +
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTK 128
Query: 203 LPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248
+D + A+ +A +L +SA NV + + A++
Sbjct: 129 KVVDY-----TTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 75/166 (45%), Gaps = 6/166 (3%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ L+GD +GK L ++ D + G++ +T+ + G I IW+ G
Sbjct: 17 FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFDDFIQ 202
+ + + + I+ ++D+T + + +V +W Q+ R ++ +++G K D +
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 203 LPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248
+D + A+ +A +L +SA NV + + A++
Sbjct: 137 KVVDY-----TTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 76/172 (44%), Gaps = 12/172 (6%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
KI L+GD +GK++ L ++ DE G+ +T+ V +I IW+ G
Sbjct: 11 FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFD--DF 200
+ + + ++ L ++D++ + ++ W + R+ + + +IG K D
Sbjct: 71 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHL 130
Query: 201 IQLPIDLQWTIASQARAYAKALNATLFFSSATYNI-NVNKILKFITAKLFDI 251
+P D +A+ +A N LF ++ N NV+K + + +F +
Sbjct: 131 RAVPTD-------EAKNFAME-NQMLFTETSALNSDNVDKAFRELIVAIFQM 174
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 76/165 (46%), Gaps = 6/165 (3%)
Query: 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK 144
K+ L+GD +GK+ L ++ D + G++ +T+ + G I IW+ G +
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 145 AQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFDDFIQL 203
+ + + I+ ++D+T + + +V +W Q+ R ++ +++G K D +
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 204 PIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248
+D + A+ +A +L +SA NV + + A++
Sbjct: 121 VVDY-----TTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 76/166 (45%), Gaps = 6/166 (3%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ L+GD +GK+ L ++ D + G++ +T+ + G I IW+ G
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFDDFIQ 202
+ + + + I+ ++D+T + + +V +W Q+ R ++ +++G K D +
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 203 LPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248
+D + A+ +A +L +SA NV + + A++
Sbjct: 130 KVVD-----NTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 75/166 (45%), Gaps = 6/166 (3%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ L+GD +GK+ L ++ D + G++ +T+ + G I IW+ G
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFDDFIQ 202
+ + + + I+ ++D+T + + +V +W Q+ R ++ +++G K D +
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153
Query: 203 LPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248
+D + A+ +A +L +SA NV + A++
Sbjct: 154 KVVDY-----TTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 76/166 (45%), Gaps = 6/166 (3%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ L+GD +GK+ L ++ D + G++ +T+ + G I IW+ G
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFDDFIQ 202
+ + + + I+ ++D+T + + +V +W Q+ R ++ +++G K D +
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 203 LPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248
+D + A+ +A +L +SA NV + + A++
Sbjct: 130 KVVD-----NTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 76/166 (45%), Gaps = 6/166 (3%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ L+GD +GK+ L ++ D + G++ +T+ + G I IW+ G
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFDDFIQ 202
+ + + + I+ ++D+T + + +V +W Q+ R ++ +++G K D +
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 203 LPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248
+D + A+ +A +L +SA NV + + A++
Sbjct: 137 KVVDY-----TTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYSIWE 138
A+K ++GD +GKT L Y + PGE + + ++V G ++ +W+
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 57
Query: 139 VTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQAR-KCNQTAIPIIIGTK 196
G P++ + L F L S + ++V +WY + R C T I I++GTK
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTK 116
Query: 197 FD 198
D
Sbjct: 117 LD 118
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYSIWE 138
A+K ++GD +GKT L Y + PGE + + ++V G ++ +W+
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 57
Query: 139 VTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQAR-KCNQTAIPIIIGTK 196
G P++ + L F L S + ++V +WY + R C T I I++GTK
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTK 116
Query: 197 FD 198
D
Sbjct: 117 LD 118
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYSIWE 138
A+K ++GD +GKT L Y + PGE + + ++V G ++ +W+
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 57
Query: 139 VTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQAR-KCNQTAIPIIIGTK 196
G P++ + L F L S + ++V +WY + R C T I I++GTK
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTK 116
Query: 197 FD 198
D
Sbjct: 117 LD 118
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLV-RGARISYSIWEVTGDA 143
KI L+GD +GKT+++ + + E+ + G T L +G I +++W+ G
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIII 193
K V + + FD+TSR T +++ RW ++ + PI++
Sbjct: 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVV 122
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141
V KI ++GD GKT+ L + D + P N + + RI S+W+ +G
Sbjct: 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSG 64
Query: 142 DAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVI-RWYQQARK-CNQTAIPIIIGTKFD 198
+ P++ DS A+L FD++ TL SV+ +W + ++ C T + +++G K D
Sbjct: 65 SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKM-LLVGCKSD 122
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYSIWE 138
A+K ++GD +GKT L Y + PGE + + ++V G ++ +W+
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 57
Query: 139 VTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQAR-KCNQTAIPIIIGTK 196
G P++ + L F L S + ++V +WY + R C T I I++GTK
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTK 116
Query: 197 FD 198
D
Sbjct: 117 LD 118
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYSIWE 138
A+K ++GD +GKT L Y + PGE + + ++V G ++ +W+
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 57
Query: 139 VTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQAR-KCNQTAIPIIIGTK 196
G P++ + L F L S + ++V +WY + R C T I I++GTK
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTK 116
Query: 197 FD 198
D
Sbjct: 117 LD 118
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYSIWE 138
A+K ++GD +GKT L Y + PGE + + ++V G ++ +W+
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 57
Query: 139 VTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQAR-KCNQTAIPIIIGTK 196
G P++ + L F L S + ++V +WY + R C T I I++GTK
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTK 116
Query: 197 FD 198
D
Sbjct: 117 LD 118
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYSIWE 138
A+K ++GD +GKT L Y + PGE + + ++V G ++ +W+
Sbjct: 30 AIKCVVVGDGAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 84
Query: 139 VTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQAR-KCNQTAIPIIIGTK 196
G P++ + L F L S + ++V +WY + R C T I I++GTK
Sbjct: 85 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTK 143
Query: 197 FD 198
D
Sbjct: 144 LD 145
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYSIWE 138
A+K ++GD +GKT L Y + PGE + + ++V G ++ +W+
Sbjct: 22 AIKCVVVGDGAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 76
Query: 139 VTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQAR-KCNQTAIPIIIGTK 196
G P++ + L F L S + ++V +WY + R C T I I++GTK
Sbjct: 77 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTK 135
Query: 197 FD 198
D
Sbjct: 136 LD 137
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYSIWE 138
A+K ++GD +GKT L Y + PGE + + ++V G ++ +W+
Sbjct: 30 AIKCVVVGDGAVGKTCLLISYTTN-----ALPGEYIPTVFDNYSANVMVDGKPVNLGLWD 84
Query: 139 VTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQAR-KCNQTAIPIIIGTK 196
G P++ + L F L S + ++V +WY + R C T I I++GTK
Sbjct: 85 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTK 143
Query: 197 FD 198
D
Sbjct: 144 LD 145
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYSIWE 138
A+K ++GD +GKT L Y + PGE + + ++V G ++ +W+
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 57
Query: 139 VTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQAR-KCNQTAIPIIIGTK 196
G P++ + L F L S + ++V +WY + R C T I I++GTK
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTK 116
Query: 197 FD 198
D
Sbjct: 117 LD 118
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYSIWE 138
A+K ++GD +GKT L Y + PGE + + ++V G ++ +W+
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 57
Query: 139 VTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQAR-KCNQTAIPIIIGTK 196
G P++ + L F L S + ++V +WY + R C T I I++GTK
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTK 116
Query: 197 FD 198
D
Sbjct: 117 LD 118
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYSIWE 138
A+K ++GD +GKT L Y + PGE + + ++V G ++ +W+
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 59
Query: 139 VTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQAR-KCNQTAIPIIIGTK 196
G P++ + L F L S + ++V +WY + R C T I I++GTK
Sbjct: 60 TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTK 118
Query: 197 FD 198
D
Sbjct: 119 LD 120
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYSIWE 138
A+K ++GD +GKT L Y + PGE + + ++V G ++ +W+
Sbjct: 7 AIKCVVVGDGAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 61
Query: 139 VTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQAR-KCNQTAIPIIIGTK 196
G P++ + L F L S + ++V +WY + R C T I I++GTK
Sbjct: 62 TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTK 120
Query: 197 FD 198
D
Sbjct: 121 LD 122
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYS 135
++ A+K ++GD +GKT L Y + PGE + + ++V G ++
Sbjct: 1 SMQAIKCVVVGDGAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDGKPVNLG 55
Query: 136 IWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQAR-KCNQTAIPIII 193
+W+ G P++ + L F L S + ++V +WY + R C T I +++
Sbjct: 56 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI-LLV 114
Query: 194 GTKFD 198
GTK D
Sbjct: 115 GTKLD 119
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYS 135
++ A+K ++GD +GKT L Y + PGE + + ++V G ++
Sbjct: 1 SMQAIKCVVVGDGAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDGKPVNLG 55
Query: 136 IWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQAR-KCNQTAIPIII 193
+W+ G P++ + L F L S + ++V +WY + R C T I +++
Sbjct: 56 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI-LLV 114
Query: 194 GTKFD 198
GTK D
Sbjct: 115 GTKLD 119
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYSIWE 138
A+K ++GD +GKT L Y + PGE + + ++V G ++ +W+
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 57
Query: 139 VTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQAR-KCNQTAIPIIIGTK 196
G P++ + L F L S + ++V +WY + R C T I +++GTK
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI-LLVGTK 116
Query: 197 FD 198
D
Sbjct: 117 LD 118
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 80/178 (44%), Gaps = 13/178 (7%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ L+GD +GKT L ++ D G++ +T+ + G RI IW+ G
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQ 202
+ + + ++ I+ ++D+T+ + ++ W + + + +I+G K D +
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128
Query: 203 LPIDLQWTIASQARAYAKALNATLFF--SSATYNINVNKILKFITAKLFDIPWTLERN 258
+ S+ R AL+ + F +SA NINV F A+ DI +++N
Sbjct: 129 RQV-------SKERGEKLALDYGIKFMETSAKANINVENAF-FTLAR--DIKAKMDKN 176
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMM----DKTLLVRGARISYSIWE 138
A+K ++GD +GKT L Y + PGE + + ++V G ++ +W+
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 57
Query: 139 VTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQAR-KCNQTAIPIIIGTK 196
G P++ + L F L S + ++V +WY + R C T I I++GTK
Sbjct: 58 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTK 116
Query: 197 FD 198
D
Sbjct: 117 LD 118
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYS 135
++ A+K ++GD +GKT L Y + PGE + + ++V G ++
Sbjct: 3 HMQAIKCVVVGDGAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDGKPVNLG 57
Query: 136 IWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQAR-KCNQTAIPIII 193
+W+ G P++ + L F L S + ++V +WY + R C T I I++
Sbjct: 58 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILV 116
Query: 194 GTKFD 198
GTK D
Sbjct: 117 GTKLD 121
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYSIWE 138
A+K ++GD +GKT L Y + PGE + + ++V G ++ +W+
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 57
Query: 139 VTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQAR-KCNQTAIPIIIGTK 196
G P++ + L F L S + ++V +WY + R C T I I++GTK
Sbjct: 58 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTK 116
Query: 197 FD 198
D
Sbjct: 117 LD 118
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGD 142
++K+ L+GD GKTS L + + +P M L V+G + IW+ G
Sbjct: 34 SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYM-VNLQVKGKPVHLHIWDTAGQ 92
Query: 143 AKAQDHLPVACKDSIAILFMFDLTSRCTLKSVI-RWYQQARK-CNQTAIPIIIGTKFD 198
P+ D+ +L FD+TS + ++ RWY + C + I I++G K D
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPI-IVVGCKTD 149
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K ++G GK+ L +++ ++ +Q + G+ + + V G + IW+ G
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIII-GTKFD 198
+ + + + L ++D+TSR T S+ W AR I +I+ G K D
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKD 141
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 11/174 (6%)
Query: 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK 144
K+ L+GD GKT+ L+ D + P N L R+ S+W+ +G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 70
Query: 145 AQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQA--RKCNQTAIPIIIGTKFD---- 198
+ P+ DS A+L FD++ T+ S ++ ++ C T + ++IG K D
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDLRTD 129
Query: 199 --DFIQLPIDLQWTIA-SQARAYAKALNATLFFSSATYNINVNKILKFITAKLF 249
++L Q I+ Q A AK L A ++ + + + F TA +
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASML 183
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYSIWE 138
A+K ++GD +GKT L Y + PGE + + ++V G ++ +W+
Sbjct: 30 AIKCVVVGDGAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 84
Query: 139 VTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQAR-KCNQTAIPIIIGTK 196
G P++ + L F L S + ++V +WY + R C T I I++GTK
Sbjct: 85 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTK 143
Query: 197 FD 198
D
Sbjct: 144 LD 145
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 11/174 (6%)
Query: 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK 144
K+ L+GD GKT+ L+ D + P N L R+ S+W+ +G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 71
Query: 145 AQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQA--RKCNQTAIPIIIGTKFD---- 198
+ P+ DS A+L FD++ T+ S ++ ++ C T + ++IG K D
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDLRTD 130
Query: 199 --DFIQLPIDLQWTIA-SQARAYAKALNATLFFSSATYNINVNKILKFITAKLF 249
++L Q I+ Q A AK L A ++ + + + F TA +
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASML 184
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 10/157 (6%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ L+GD +GKT L ++ D G++ +T+ + G RI IW+ G
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQ 202
+ + + ++ I+ ++D+T+ + ++ W + + + +I+G K D +
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 203 LPIDLQWTIASQARAYAKALNATLFF--SSATYNINV 237
+ S+ R AL+ + F +SA NINV
Sbjct: 127 RQV-------SKERGEKLALDYGIKFMETSAKANINV 156
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 11/174 (6%)
Query: 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK 144
K+ L+GD GKT+ L+ D + P N L R+ S+W+ +G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 87
Query: 145 AQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQA--RKCNQTAIPIIIGTKFD---- 198
+ P+ DS A+L FD++ T+ S ++ ++ C T + ++IG K D
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDLRTD 146
Query: 199 --DFIQLPIDLQWTIA-SQARAYAKALNATLFFSSATYNINVNKILKFITAKLF 249
++L Q I+ Q A AK L A ++ + + + F TA +
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASML 200
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 12/127 (9%)
Query: 78 ADNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARIS 133
+ + A+K ++GD +GK L Y + PGE + + ++V G ++
Sbjct: 5 SSGMQAIKCVVVGDGAVGKNCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDGKPVN 59
Query: 134 YSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQARK-CNQTAIPI 191
+W+ G P++ + L F L S + ++V +WY + R C T I I
Sbjct: 60 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-I 118
Query: 192 IIGTKFD 198
++GTK D
Sbjct: 119 LVGTKLD 125
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 6/157 (3%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K ++G+ GK+ L +++ + + + G+ K + V G + IW+ G
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARK-CNQTAIPIIIGTKFDDFIQ 202
+ + + + L ++D+TSR T ++ W AR +Q + I+ G K D
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD---- 126
Query: 203 LPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239
L D + T +R +A+ +SA NV +
Sbjct: 127 LDADREVTFLEASR-FAQENELMFLETSALTGENVEE 162
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGD 142
A+K ++GD +GKT L Y + P + ++V G ++ +W+ G
Sbjct: 13 AIKCVVVGDGAVGKTCLLISYTTNAFSGEYIP-TVFDNYSANVMVDGKPVNLGLWDTAGQ 71
Query: 143 AKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQAR-KCNQTAIPIIIGTKFD 198
P++ + L F L S + ++V +WY + R C T I I++GTK D
Sbjct: 72 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTKLD 128
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 5/134 (3%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K ++G+ GK+ L +++ + + + G+ K + V G + IW+ G
Sbjct: 12 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARK-CNQTAIPIIIGTKFDDFIQ 202
+ + + + L ++D+TSR T ++ W AR +Q + I+ G K D
Sbjct: 72 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD---- 127
Query: 203 LPIDLQWTIASQAR 216
L D + T +R
Sbjct: 128 LDADREVTFLEASR 141
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ L+G+ +GK+ L ++ D G++ KT+ + G + IW+ G
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFD 198
+ + + S I+ ++D+T + + V W Q+ R T + +++G K D
Sbjct: 82 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 137
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 88 LLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQD 147
L+GD +GK+ L ++ D + G++ +T+ + G I IW+ G + +
Sbjct: 3 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT 62
Query: 148 HLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFD 198
+ + I+ ++D+T + + +V +W Q+ R ++ +++G K D
Sbjct: 63 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 114
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
LK+ LLGD +GK+S + +YV ++ + G+ +++ L V G ++ IW+ G
Sbjct: 8 LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-----IIIGTKFD 198
+ + + + L F + R + +++ W ++ P +++G K D
Sbjct: 68 RFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD 127
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/169 (18%), Positives = 75/169 (44%), Gaps = 11/169 (6%)
Query: 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141
VA+K+ ++G+ +GK+S +++Y + G++ +++ + V + +W+ G
Sbjct: 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG 63
Query: 142 DAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFI 201
+ + + A + +F T R + +++ W ++ + +G +
Sbjct: 64 QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREK--------VVAEVGDIPTALV 115
Query: 202 QLPIDL---QWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAK 247
Q IDL +A AK L + +S ++NV+++ K++ K
Sbjct: 116 QNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 164
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ L+G+ +GK+ L ++ D G++ KT+ + G + IW+ G
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFD 198
+ + + S I+ ++D+T + + V W Q+ R T + +++G K D
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 124
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ L+G+ +GK+ L ++ D G++ KT+ + G + IW+ G
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFD 198
+ + + S I+ ++D+T + + V W Q+ R T + +++G K D
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 124
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
+K +GD +GKT L Y G+ P + ++V G+ ++ +W+ G
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTGNTFPTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQE 65
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPII-IGTKFD 198
P++ + + L F L S+ + +++ + + K IPI+ +GTK D
Sbjct: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLD 121
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 5/134 (3%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K ++G+ GK+ L +++ + + + G+ K + V G + IW+ G
Sbjct: 9 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARK-CNQTAIPIIIGTKFDDFIQ 202
+ + + + L ++D+TSR T ++ W AR +Q + I+ G K D
Sbjct: 69 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD---- 124
Query: 203 LPIDLQWTIASQAR 216
L D + T +R
Sbjct: 125 LDADREVTFLEASR 138
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYS 135
++ A+K ++GD +GKT L Y + PGE + + ++V ++
Sbjct: 7 SMQAIKCVVVGDVAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDSKPVNLG 61
Query: 136 IWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQAR-KCNQTAIPIII 193
+W+ G P++ + L F L S + ++V +W+ + R C T I I++
Sbjct: 62 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPI-ILV 120
Query: 194 GTKFD 198
GTK D
Sbjct: 121 GTKLD 125
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYSIWE 138
A+K ++GD +GKT L Y + PGE + + ++V ++ +W+
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDSKPVNLGLWD 57
Query: 139 VTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQAR-KCNQTAIPIIIGTK 196
G P++ + L F L S + ++V +W+ + R C T I I++GTK
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPI-ILVGTK 116
Query: 197 FD 198
D
Sbjct: 117 LD 118
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYSIWE 138
A+K ++GD +GKT L Y + PGE + + ++V ++ +W+
Sbjct: 9 AIKCVVVGDVAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDSKPVNLGLWD 63
Query: 139 VTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQAR-KCNQTAIPIIIGTK 196
G P++ + L F L S + ++V +W+ + R C T I I++GTK
Sbjct: 64 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPI-ILVGTK 122
Query: 197 FD 198
D
Sbjct: 123 LD 124
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYSIWEV 139
+K ++GD +GKT L Y + PGE + + ++V G ++ +W+
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 140 TGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQARK-CNQTAIPIIIGTKF 197
G P++ + L F L S + V +WY + R C T I I++GTK
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI-ILVGTKL 269
Query: 198 D 198
D
Sbjct: 270 D 270
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYSIWEV 139
+K ++GD +GKT L Y + PGE + + ++V G ++ +W+
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 140 TGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQARK-CNQTAIPIIIGTKF 197
G P++ + L F L S + V +WY + R C T I I++GTK
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI-ILVGTKL 269
Query: 198 D 198
D
Sbjct: 270 D 270
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ L+GD +GK+ L ++ D G++ +T+ + + IW+ G
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ-ARKCNQTAIPIIIGTKFD 198
+ + + + I+ ++D+T R + +V +W Q+ R + +++G K D
Sbjct: 70 RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCD 125
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYSIWEV 139
+K ++GD +GKT L Y + PGE + + ++V G ++ +W+
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 140 TGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQARK-CNQTAIPIIIGTKF 197
G P++ + L F L S + V +WY + R C T I I++GTK
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI-ILVGTKL 269
Query: 198 D 198
D
Sbjct: 270 D 270
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K ++GD +GK+ L ++ + G+ + + + G +I IW+ G
Sbjct: 11 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARK-CNQTAIPIIIGTKFD 198
+ + + L ++D+T R T + W + AR+ N + ++IG K D
Sbjct: 71 SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 126
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ LLGD +GK+S + +YV ++ + G+ ++K L V G ++ IW+ G
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRW-----YQQARKCNQTAIPIIIGTKFD 198
+ + + S L F + + +++ W Y K ++ +I+G K D
Sbjct: 68 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
KI LLGD +GK+S + +YV ++ + G+ ++K L V G ++ IW+ G
Sbjct: 12 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRW-----YQQARKCNQTAIPIIIGTKFD 198
+ + + S L F + + +++ W Y K ++ +I+G K D
Sbjct: 72 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTD 131
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K+ LLGD +GK+S + +YV ++ + G+ ++K L V G ++ IW+ G
Sbjct: 10 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRW-----YQQARKCNQTAIPIIIGTKFD 198
+ + + S L F + + +++ W Y K ++ +I+G K D
Sbjct: 70 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 129
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 31/144 (21%)
Query: 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL----NMMDKTLLVRGARISYS 135
++ A+K ++GD +GKT L Y + PGE + + ++V G ++
Sbjct: 2 SMQAIKCVVVGDGAVGKTCLLISYTTN-----AFPGEYIPTVFDNYSANVMVDGKPVNLG 56
Query: 136 IWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV--------------------I 175
+W+ G P++ ++ + D+TSR K +
Sbjct: 57 LWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRA 116
Query: 176 RWYQQAR-KCNQTAIPIIIGTKFD 198
+WY + R C T I I++GTK D
Sbjct: 117 KWYPEVRHHCPNTPI-ILVGTKLD 139
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
K ++GD +GK+ L ++ + G+ + + + G +I IW+ G
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFD 198
+ + + L ++D+T R T + W + AR+ + + + I +IG K D
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 137
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGD 142
ALKI ++GD +GKT L + E P N + + +W+ G
Sbjct: 23 ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFEN-FSHVMKYKNEEFILHLWDTAGQ 81
Query: 143 AKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQARKCNQTAIPIIIGTKFD 198
+ P++ DS +L F + +R + ++ +W + + TA +++G K D
Sbjct: 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 138
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Query: 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGD 142
ALKI ++GD +GKT L + E P N + + +W+ G
Sbjct: 22 ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFEN-FSHVMKYKNEEFILHLWDTAGQ 80
Query: 143 AKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQARKCNQTAIPIIIGTKFD 198
+ P++ DS +L F + +R + ++ +W + + TA +++G K D
Sbjct: 81 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 137
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 78 ADNLVALKISLLGDCHIGKTS----FLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGA-RI 132
++ LKI +LGD GKTS F ++ G + +Q GL+ + + + G +
Sbjct: 1 GSHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQT----IGLDFFLRRITLPGNLNV 56
Query: 133 SYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTA---- 188
+ IW++ G L + +L ++D+T+ + +++ WY +K ++ +
Sbjct: 57 TLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQP 116
Query: 189 IPIIIGTKFD 198
+ ++G K D
Sbjct: 117 LVALVGNKID 126
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 80/170 (47%), Gaps = 17/170 (10%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
LK+ ++G+ GK++ + +Y+ Q SP G K ++V G I + G
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPP 78
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKC---NQTAIP-IIIGTKFDD 199
+ Q V A++F+F L + ++V ++ R C N + +P +++GT+ D
Sbjct: 79 ELQFAAWVD-----AVVFVFSLEDEISFQTVYNYF--LRLCSFRNASEVPMVLVGTQ--D 129
Query: 200 FIQLPIDLQWTIASQARAYAKALNATLFFSS-ATYNINVNKILKFITAKL 248
I + + S+AR + L ++ + ATY +NV ++ + + K+
Sbjct: 130 AIS-AANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
++++L+G + GKT+F+ + + P G NM V ++ IW++ G
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRK----VTKGNVTIKIWDIGGQP 78
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLK-SVIRWYQQARKCNQTAIPI-IIGTKFD 198
+ + C+ AI++M D R ++ S + K IP+ ++G K D
Sbjct: 79 RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRD 135
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 70/166 (42%), Gaps = 16/166 (9%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARIS---YSIWEVT 140
K+ L+G+ +GK++ + G + + P + ++ ++V ++ Y IWE
Sbjct: 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWE-Q 82
Query: 141 GDAKA--QDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCN-QTAIPII-IGTK 196
GDA +DH + A L +F +T R + V + R +P+I +G K
Sbjct: 83 GDAGGWLRDH---CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 139
Query: 197 FDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILK 242
D + L+ + R A L+ +SA + N ++ +
Sbjct: 140 SDLARSREVSLE-----EGRHLAGTLSCKHIETSAALHHNTRELFE 180
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 12/168 (7%)
Query: 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSI--- 136
++ ++ LLGD +GKTS + G ++E+ G ++ ++TL V G + +
Sbjct: 1 SMALYRVVLLGDPGVGKTSLASLFAG-KQERDLHEQLGEDVYERTLTVDGEDTTLVVVDT 59
Query: 137 WEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQT-AIPII-IG 194
WE K+ + A + ++ + R + +S Q R+ +Q +PII +G
Sbjct: 60 WEAEKLDKSWSQ-ESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVG 118
Query: 195 TKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILK 242
K D + ++ + RA A + +SAT NV ++ +
Sbjct: 119 NKADLARCREVSVE-----EGRACAVVFDCKFIETSATLQHNVAELFE 161
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 16/166 (9%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARIS---YSIWEVT 140
K+ LLG+ +GK++ + G + + + ++ ++V ++ Y IWE
Sbjct: 13 FKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWE-Q 71
Query: 141 GDAKA--QDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCN-QTAIPII-IGTK 196
GDA QDH + A L +F +T R + V + R +P+I +G K
Sbjct: 72 GDAGGWLQDH---CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 128
Query: 197 FDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILK 242
D + L+ + R A L+ +SA + N ++ +
Sbjct: 129 SDLARSREVSLE-----EGRHLAGTLSCKHIETSAALHHNTRELFE 169
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 16/166 (9%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARIS---YSIWEVT 140
K+ L+G+ +GK++ + G + + + ++ ++V ++ Y IWE
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWE-Q 61
Query: 141 GDAKA--QDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCN-QTAIPII-IGTK 196
GDA QDH + A L +F +T R + V + R +P+I +G K
Sbjct: 62 GDAGGWLQDH---CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 118
Query: 197 FDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILK 242
D + L+ + R A L+ +SA + N ++ +
Sbjct: 119 SDLARSREVSLE-----EGRHLAGTLSCKHIETSAALHHNTRELFE 159
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Query: 131 RISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP 190
I + IW+ G + +P+ + + + +FD+++ TL W Q K + I
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQL-KISSNYII 150
Query: 191 IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLF 249
I++ K D + +D+ + + YA+ N +SA N+ I + +++
Sbjct: 151 ILVANKIDKN-KFQVDIL-----EVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEV 139
+++ K+ ++GD GKT L + DE + P N + + V G ++ ++W+
Sbjct: 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDT 80
Query: 140 TGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFD 198
G P++ D+ IL F + S +L+++ +W + + I++ K D
Sbjct: 81 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 140
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
L++ +LG + GKT+ L+K+ G++ + SP G N+ KTL RG ++ +IW+V G
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLGFNI--KTLEHRGFKL--NIWDVGGQK 73
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQ 179
+ + + + ++++ D R ++ R Q
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQ 109
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
L++ +LG + GKT+ L+K+ G++ + SP G N+ KTL RG ++ +IW+V G
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDIDT-ISPTLGFNI--KTLEHRGFKL--NIWDVGGQK 71
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQ 179
+ + + + ++++ D R ++ R Q
Sbjct: 72 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQ 107
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
L++ +LG + GKT+ L+K+ G++ + SP G N+ KTL RG ++ +IW+V G
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLGFNI--KTLEHRGFKL--NIWDVGGQK 73
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQ 179
+ + + + ++++ D R ++ R Q
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQ 109
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDK 123
+L +K+ L+GD GKTS L++ +G+ + S GLN++ K
Sbjct: 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTK 81
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
++++L+G + GKT+F+ + + P G NM T ++ +W++ G
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQP 87
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLK-SVIRWYQQARKCNQTAIPI-IIGTKFD 198
+ + C+ AI++M D + ++ S + K IP+ ++G K D
Sbjct: 88 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 144
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 10/120 (8%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGE----GLNMMDKTLLVRGARISYSIWEV 139
+K L+GD +GKTS + Y + G P E + + V G + + +
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTN-----GYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDT 75
Query: 140 TGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPII-IGTKFD 198
G + P+ ++ L F + S + ++V + +C+ PII +GT+ D
Sbjct: 76 AGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSD 135
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
L++ +LG + GKT+ L+K+ G++ + SP G N+ KTL RG ++ +IW+V G
Sbjct: 2 LRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLGFNI--KTLEHRGFKL--NIWDVGGLK 56
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQ 179
+ + + + ++++ D R ++ R Q
Sbjct: 57 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQ 92
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
++++L+G + GKT+F+ + + P G NM T ++ +W++ G
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQP 78
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLK-SVIRWYQQARKCNQTAIPI-IIGTKFD 198
+ + C+ AI++M D + ++ S + K IP+ ++G K D
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 135
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 33/179 (18%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGD-----EKEQGGSPGEGLNMMDKTLLVRGARISYSIWE 138
L++ +LGD GK+S + +++ EK + K +LV G I E
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTES-------EQYKKEMLVDGQTHLVLIRE 60
Query: 139 VTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ---ARKCNQTAIPI-IIG 194
+A A D D A++F+F L + ++V R + Q R + + + ++G
Sbjct: 61 ---EAGAPDAKFSGWAD--AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVG 115
Query: 195 TKFDDFIQLPIDLQWTIASQARAYAKALNATL-----FFSSATYNINVNKILKFITAKL 248
T+ P + AR A+AL A + + + ATY +NV+++ + + K+
Sbjct: 116 TQDRISASSP-----RVVGDAR--ARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 76/177 (42%), Gaps = 29/177 (16%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGD-----EKEQGGSPGEGLNMMDKTLLVRGARISYSIWE 138
L++ +LGD GK+S + +++ EK + K +LV G I E
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTES-------EQYKKEMLVDGQTHLVLIRE 60
Query: 139 VTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQ---ARKCNQTAIPI-IIG 194
+A A D D A++F+F L + ++V R + Q R + + + ++G
Sbjct: 61 ---EAGAPDAKFSGWAD--AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVG 115
Query: 195 TKFDDFIQLPIDLQWTIASQARAYAKALN---ATLFFSSATYNINVNKILKFITAKL 248
T+ P + ARA A + + + + ATY +NV+++ + + K+
Sbjct: 116 TQDRISASSP-----RVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 167
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPG------EGLNMMDKTLLVRGARISYSIWE 138
+I+L+G+ + GKTS G + G PG GL +K L ++ YS+
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSP 64
Query: 139 VTGDAK-AQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKF 197
+ +AK A+D+L DS IL + D T ++ R + +T IP+ I
Sbjct: 65 YSPEAKVARDYLLSQRADS--ILNVVDAT------NLERNLYLTTQLIETGIPVTIALNM 116
Query: 198 DDFI 201
D +
Sbjct: 117 IDVL 120
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 51/117 (43%), Gaps = 4/117 (3%)
Query: 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143
+K ++GD +GKT L Y ++ P N T+++ G + +++ G
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQE 72
Query: 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVI-RWYQQ-ARKCNQTAIPIIIGTKFD 198
P++ + L F + S + ++V +W + C +T +++GT+ D
Sbjct: 73 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPF-LLVGTQID 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,500,247
Number of Sequences: 62578
Number of extensions: 282478
Number of successful extensions: 1119
Number of sequences better than 100.0: 180
Number of HSP's better than 100.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 894
Number of HSP's gapped (non-prelim): 180
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)