Query 041042
Match_columns 268
No_of_seqs 271 out of 1784
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 03:13:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041042.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041042hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.6E-45 3.5E-50 289.1 18.0 169 79-252 5-175 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 9.7E-44 2.1E-48 278.1 18.3 169 81-254 3-172 (200)
3 KOG0078 GTP-binding protein SE 100.0 4.8E-43 1E-47 279.1 19.3 169 79-252 8-177 (207)
4 KOG0080 GTPase Rab18, small G 100.0 2.1E-42 4.7E-47 262.1 17.5 173 80-257 8-182 (209)
5 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 4E-42 8.8E-47 269.0 18.8 168 80-252 19-188 (221)
6 KOG0098 GTPase Rab2, small G p 100.0 1.5E-42 3.4E-47 269.3 15.8 168 80-252 3-171 (216)
7 KOG0079 GTP-binding protein H- 100.0 4.1E-42 8.9E-47 257.2 10.9 168 80-252 5-172 (198)
8 KOG0394 Ras-related GTPase [Ge 100.0 4.1E-41 8.8E-46 260.9 16.2 171 80-254 6-183 (210)
9 KOG0087 GTPase Rab11/YPT3, sma 100.0 7.9E-40 1.7E-44 259.5 17.2 171 77-252 8-179 (222)
10 cd04128 Spg1 Spg1p. Spg1p (se 100.0 7.9E-39 1.7E-43 259.5 22.4 182 84-265 1-182 (182)
11 KOG0093 GTPase Rab3, small G p 100.0 4.6E-39 1E-43 240.5 15.4 171 77-252 15-186 (193)
12 cd04121 Rab40 Rab40 subfamily. 100.0 3.1E-38 6.7E-43 257.2 21.6 167 81-252 4-170 (189)
13 KOG0095 GTPase Rab30, small G 100.0 3.6E-39 7.8E-44 241.8 13.9 167 80-251 4-171 (213)
14 KOG0091 GTPase Rab39, small G 100.0 5.4E-39 1.2E-43 244.2 13.5 167 81-252 6-176 (213)
15 cd04133 Rop_like Rop subfamily 100.0 9.3E-38 2E-42 251.6 21.2 167 84-251 2-175 (176)
16 cd04120 Rab12 Rab12 subfamily. 100.0 7.8E-38 1.7E-42 257.2 21.0 163 84-251 1-165 (202)
17 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.2E-37 2.5E-42 252.5 20.8 169 81-250 3-181 (182)
18 KOG0086 GTPase Rab4, small G p 100.0 1.2E-38 2.7E-43 239.8 13.9 168 80-252 6-174 (214)
19 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 8.2E-37 1.8E-41 255.4 22.1 171 80-251 10-190 (232)
20 cd04131 Rnd Rnd subfamily. Th 100.0 6.3E-37 1.4E-41 247.5 20.5 166 83-249 1-176 (178)
21 cd01875 RhoG RhoG subfamily. 100.0 4E-36 8.7E-41 245.5 21.0 168 83-251 3-179 (191)
22 KOG0088 GTPase Rab21, small G 100.0 1.6E-37 3.4E-42 235.1 10.7 170 80-254 10-180 (218)
23 cd04122 Rab14 Rab14 subfamily. 100.0 1.9E-35 4.1E-40 236.0 21.3 163 83-250 2-165 (166)
24 cd01874 Cdc42 Cdc42 subfamily. 100.0 2.5E-35 5.4E-40 237.6 20.5 164 84-248 2-174 (175)
25 KOG0081 GTPase Rab27, small G 100.0 2E-37 4.4E-42 234.6 7.0 170 78-252 4-184 (219)
26 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 3.4E-35 7.4E-40 244.4 21.0 169 83-252 1-179 (222)
27 PLN03071 GTP-binding nuclear p 100.0 3.9E-35 8.5E-40 244.5 21.1 165 81-252 11-175 (219)
28 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 4.9E-35 1.1E-39 241.0 21.4 168 84-256 1-175 (201)
29 KOG0097 GTPase Rab14, small G 100.0 5.6E-36 1.2E-40 222.9 14.1 173 80-257 8-181 (215)
30 KOG0083 GTPase Rab26/Rab37, sm 100.0 1.4E-37 3.1E-42 229.1 5.1 162 87-253 1-164 (192)
31 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 5E-35 1.1E-39 235.2 20.2 164 83-252 2-167 (172)
32 cd04117 Rab15 Rab15 subfamily. 100.0 6.5E-35 1.4E-39 232.0 20.5 159 84-247 1-160 (161)
33 cd01867 Rab8_Rab10_Rab13_like 100.0 1.3E-34 2.9E-39 231.3 21.1 164 82-250 2-166 (167)
34 cd04127 Rab27A Rab27a subfamil 100.0 1.3E-34 2.9E-39 233.9 20.6 164 82-250 3-178 (180)
35 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.8E-34 3.8E-39 231.6 21.0 165 85-252 2-168 (170)
36 KOG1673 Ras GTPases [General f 100.0 2.7E-35 5.8E-40 222.3 14.8 189 80-268 17-205 (205)
37 PF00071 Ras: Ras family; Int 100.0 1.4E-34 2.9E-39 229.8 19.5 160 85-249 1-161 (162)
38 cd01865 Rab3 Rab3 subfamily. 100.0 2.8E-34 6E-39 229.1 21.1 162 84-250 2-164 (165)
39 cd00877 Ran Ran (Ras-related n 100.0 3.2E-34 6.9E-39 229.2 20.7 162 84-252 1-162 (166)
40 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 5.2E-34 1.1E-38 227.5 21.2 163 83-250 2-165 (166)
41 cd04134 Rho3 Rho3 subfamily. 100.0 4.3E-34 9.4E-39 233.1 20.6 168 84-252 1-177 (189)
42 smart00176 RAN Ran (Ras-relate 100.0 3.1E-34 6.8E-39 235.4 19.8 156 89-251 1-156 (200)
43 cd04109 Rab28 Rab28 subfamily. 100.0 4E-34 8.7E-39 238.0 20.7 164 84-252 1-169 (215)
44 cd04110 Rab35 Rab35 subfamily. 100.0 6.9E-34 1.5E-38 233.8 21.8 166 82-252 5-170 (199)
45 cd01871 Rac1_like Rac1-like su 100.0 5.5E-34 1.2E-38 229.5 20.4 163 84-247 2-173 (174)
46 cd04119 RJL RJL (RabJ-Like) su 100.0 7E-34 1.5E-38 226.3 20.5 162 84-250 1-168 (168)
47 cd04136 Rap_like Rap-like subf 100.0 7.4E-34 1.6E-38 225.5 20.3 159 84-248 2-162 (163)
48 cd04124 RabL2 RabL2 subfamily. 100.0 1.6E-33 3.5E-38 223.9 21.4 160 84-251 1-160 (161)
49 cd01873 RhoBTB RhoBTB subfamil 100.0 8.9E-34 1.9E-38 232.1 20.0 163 83-247 2-194 (195)
50 cd04175 Rap1 Rap1 subgroup. T 100.0 1.7E-33 3.8E-38 224.0 20.3 160 83-248 1-162 (164)
51 cd04111 Rab39 Rab39 subfamily. 100.0 1.6E-33 3.5E-38 233.5 20.4 165 83-252 2-169 (211)
52 cd01868 Rab11_like Rab11-like. 100.0 2.9E-33 6.4E-38 222.8 21.1 161 83-248 3-164 (165)
53 cd04144 Ras2 Ras2 subfamily. 100.0 1.8E-33 3.8E-38 229.7 19.7 163 85-253 1-167 (190)
54 cd04125 RabA_like RabA-like su 100.0 2.9E-33 6.3E-38 228.0 20.9 164 84-252 1-165 (188)
55 cd04106 Rab23_lke Rab23-like s 100.0 2.4E-33 5.3E-38 222.4 19.7 159 84-247 1-161 (162)
56 cd04138 H_N_K_Ras_like H-Ras/N 100.0 3.7E-33 8.1E-38 220.8 20.7 159 83-248 1-161 (162)
57 PTZ00369 Ras-like protein; Pro 100.0 3E-33 6.6E-38 228.1 20.7 164 82-251 4-169 (189)
58 PLN03110 Rab GTPase; Provision 100.0 4E-33 8.6E-38 232.1 21.5 167 80-251 9-176 (216)
59 cd04116 Rab9 Rab9 subfamily. 100.0 4.3E-33 9.2E-38 223.0 20.8 161 82-248 4-170 (170)
60 cd04126 Rab20 Rab20 subfamily. 100.0 2.2E-33 4.7E-38 233.4 19.5 165 84-253 1-194 (220)
61 cd04112 Rab26 Rab26 subfamily. 100.0 3.8E-33 8.3E-38 227.9 20.4 166 84-254 1-168 (191)
62 cd04176 Rap2 Rap2 subgroup. T 100.0 4.9E-33 1.1E-37 221.1 20.4 160 83-248 1-162 (163)
63 cd04103 Centaurin_gamma Centau 100.0 3.5E-33 7.7E-38 221.4 19.1 154 84-247 1-157 (158)
64 cd01866 Rab2 Rab2 subfamily. 100.0 9.4E-33 2E-37 220.9 21.6 164 82-250 3-167 (168)
65 cd04132 Rho4_like Rho4-like su 100.0 4.9E-33 1.1E-37 226.3 20.2 169 84-254 1-172 (187)
66 cd01864 Rab19 Rab19 subfamily. 100.0 7E-33 1.5E-37 220.8 20.5 161 82-247 2-164 (165)
67 cd04118 Rab24 Rab24 subfamily. 100.0 9.1E-33 2E-37 225.8 21.1 168 84-252 1-169 (193)
68 PLN03108 Rab family protein; P 100.0 1.5E-32 3.2E-37 227.7 21.7 166 82-252 5-171 (210)
69 smart00174 RHO Rho (Ras homolo 100.0 1.3E-32 2.8E-37 221.0 20.0 164 86-250 1-173 (174)
70 cd04113 Rab4 Rab4 subfamily. 100.0 1.5E-32 3.2E-37 217.9 20.1 160 84-248 1-161 (161)
71 cd04140 ARHI_like ARHI subfami 100.0 1.6E-32 3.5E-37 218.9 20.3 158 84-247 2-163 (165)
72 cd04115 Rab33B_Rab33A Rab33B/R 100.0 2.9E-32 6.2E-37 218.5 20.3 161 83-248 2-168 (170)
73 smart00173 RAS Ras subfamily o 100.0 3.5E-32 7.6E-37 216.3 20.3 160 84-249 1-162 (164)
74 cd04101 RabL4 RabL4 (Rab-like4 100.0 3.4E-32 7.3E-37 216.4 20.1 160 84-248 1-163 (164)
75 cd04142 RRP22 RRP22 subfamily. 100.0 3.7E-32 8E-37 223.2 20.6 165 84-253 1-178 (198)
76 cd04130 Wrch_1 Wrch-1 subfamil 100.0 3.6E-32 7.7E-37 218.6 20.1 162 84-246 1-171 (173)
77 cd01892 Miro2 Miro2 subfamily. 100.0 3.4E-32 7.5E-37 218.1 19.1 163 82-250 3-167 (169)
78 cd04145 M_R_Ras_like M-Ras/R-R 100.0 9.1E-32 2E-36 213.7 20.7 160 83-248 2-163 (164)
79 smart00175 RAB Rab subfamily o 100.0 1.3E-31 2.8E-36 212.7 20.6 162 84-250 1-163 (164)
80 PLN03118 Rab family protein; P 100.0 2.3E-31 4.9E-36 220.8 22.6 171 79-255 10-183 (211)
81 cd01860 Rab5_related Rab5-rela 100.0 1.8E-31 3.9E-36 211.9 20.9 161 83-248 1-162 (163)
82 cd04143 Rhes_like Rhes_like su 100.0 1.1E-31 2.3E-36 227.3 20.1 159 84-248 1-170 (247)
83 cd01861 Rab6 Rab6 subfamily. 100.0 2.5E-31 5.4E-36 210.6 20.2 159 84-247 1-160 (161)
84 KOG0393 Ras-related small GTPa 100.0 1.3E-32 2.7E-37 220.3 12.3 171 82-253 3-183 (198)
85 cd04135 Tc10 TC10 subfamily. 100.0 3.9E-31 8.5E-36 212.3 20.4 165 84-249 1-174 (174)
86 cd01863 Rab18 Rab18 subfamily. 100.0 5.6E-31 1.2E-35 208.7 20.7 158 84-247 1-160 (161)
87 cd04146 RERG_RasL11_like RERG/ 100.0 2.8E-31 6.2E-36 211.5 18.9 159 85-249 1-164 (165)
88 cd04148 RGK RGK subfamily. Th 100.0 4.2E-31 9.1E-36 220.6 20.5 162 84-252 1-166 (221)
89 cd01862 Rab7 Rab7 subfamily. 100.0 7E-31 1.5E-35 210.1 20.7 164 84-252 1-170 (172)
90 KOG0395 Ras-related GTPase [Ge 100.0 1.9E-31 4.1E-36 217.5 17.3 164 82-251 2-167 (196)
91 cd04177 RSR1 RSR1 subgroup. R 100.0 8.4E-31 1.8E-35 209.6 20.6 161 83-249 1-164 (168)
92 cd01870 RhoA_like RhoA-like su 100.0 1.4E-30 3.1E-35 209.3 20.5 164 84-248 2-174 (175)
93 cd04123 Rab21 Rab21 subfamily. 100.0 3E-30 6.6E-35 204.1 20.7 160 84-248 1-161 (162)
94 cd04114 Rab30 Rab30 subfamily. 100.0 6.1E-30 1.3E-34 204.3 21.7 163 81-248 5-168 (169)
95 cd04129 Rho2 Rho2 subfamily. 100.0 4.3E-30 9.3E-35 209.2 21.0 170 83-253 1-177 (187)
96 PTZ00132 GTP-binding nuclear p 100.0 9.8E-30 2.1E-34 211.5 21.5 167 80-253 6-172 (215)
97 cd04139 RalA_RalB RalA/RalB su 100.0 1.6E-29 3.6E-34 200.4 20.4 161 84-250 1-163 (164)
98 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.4E-29 3.1E-34 207.8 19.8 150 84-234 1-175 (202)
99 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 2E-30 4.3E-35 206.8 13.8 154 86-246 2-163 (164)
100 cd04149 Arf6 Arf6 subfamily. 100.0 5.9E-30 1.3E-34 204.9 15.9 153 82-246 8-167 (168)
101 cd00154 Rab Rab family. Rab G 100.0 2.9E-29 6.2E-34 197.1 19.2 157 84-245 1-158 (159)
102 smart00177 ARF ARF-like small 100.0 8E-30 1.7E-34 205.5 16.0 155 83-249 13-174 (175)
103 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.2E-29 2.7E-34 201.2 16.5 152 84-246 1-158 (159)
104 cd01893 Miro1 Miro1 subfamily. 100.0 4.9E-29 1.1E-33 199.0 19.6 162 84-250 1-165 (166)
105 cd04158 ARD1 ARD1 subfamily. 100.0 1.6E-29 3.5E-34 202.5 16.4 157 85-253 1-165 (169)
106 cd00157 Rho Rho (Ras homology) 100.0 7E-29 1.5E-33 198.4 19.7 162 84-246 1-170 (171)
107 PLN00223 ADP-ribosylation fact 100.0 1.8E-29 4E-34 204.4 16.2 155 82-251 16-180 (181)
108 cd04147 Ras_dva Ras-dva subfam 100.0 8.6E-29 1.9E-33 203.3 19.9 164 85-253 1-167 (198)
109 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 4E-29 8.8E-34 202.8 17.5 167 83-257 3-178 (183)
110 cd00876 Ras Ras family. The R 100.0 1E-28 2.2E-33 194.9 18.9 158 85-248 1-160 (160)
111 KOG4252 GTP-binding protein [S 100.0 2.5E-31 5.4E-36 205.4 3.8 169 79-252 16-184 (246)
112 PTZ00133 ADP-ribosylation fact 100.0 3.8E-29 8.2E-34 202.8 15.5 157 83-251 17-180 (182)
113 cd04137 RheB Rheb (Ras Homolog 100.0 3.7E-28 8E-33 196.2 20.1 165 84-254 2-168 (180)
114 PLN00023 GTP-binding protein; 100.0 2E-28 4.2E-33 210.9 17.7 143 79-224 17-189 (334)
115 cd04154 Arl2 Arl2 subfamily. 100.0 2.8E-28 6E-33 195.9 16.8 155 80-246 11-172 (173)
116 cd04157 Arl6 Arl6 subfamily. 100.0 2.4E-28 5.1E-33 193.6 13.6 154 85-246 1-161 (162)
117 cd04156 ARLTS1 ARLTS1 subfamil 100.0 6.3E-28 1.4E-32 191.0 14.5 155 85-246 1-159 (160)
118 PTZ00099 rab6; Provisional 100.0 4E-27 8.7E-32 189.7 18.8 144 106-254 3-147 (176)
119 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 2E-27 4.4E-32 191.2 16.1 153 83-246 15-173 (174)
120 cd04151 Arl1 Arl1 subfamily. 99.9 2.2E-27 4.7E-32 187.8 13.5 154 85-246 1-157 (158)
121 cd04161 Arl2l1_Arl13_like Arl2 99.9 5.5E-27 1.2E-31 187.5 14.8 155 85-246 1-166 (167)
122 cd00879 Sar1 Sar1 subfamily. 99.9 2.7E-26 5.8E-31 187.0 16.9 154 82-247 18-189 (190)
123 cd04160 Arfrp1 Arfrp1 subfamil 99.9 6.6E-27 1.4E-31 186.4 13.0 151 85-246 1-166 (167)
124 cd00878 Arf_Arl Arf (ADP-ribos 99.9 2.7E-26 5.9E-31 181.3 15.7 150 85-246 1-157 (158)
125 cd04159 Arl10_like Arl10-like 99.9 2.4E-25 5.3E-30 174.8 15.5 155 85-246 1-158 (159)
126 COG1100 GTPase SAR1 and relate 99.9 5.9E-25 1.3E-29 183.0 18.5 170 83-252 5-188 (219)
127 smart00178 SAR Sar1p-like memb 99.9 3.1E-25 6.7E-30 180.1 16.2 154 82-247 16-183 (184)
128 cd01890 LepA LepA subfamily. 99.9 4.4E-25 9.5E-30 177.9 16.5 154 85-248 2-176 (179)
129 TIGR02528 EutP ethanolamine ut 99.9 1.1E-25 2.4E-30 174.8 11.1 134 85-245 2-141 (142)
130 KOG0073 GTP-binding ADP-ribosy 99.9 1.6E-24 3.5E-29 165.5 16.1 164 80-250 13-179 (185)
131 cd01897 NOG NOG1 is a nucleola 99.9 1.7E-24 3.7E-29 172.6 17.1 156 85-249 2-168 (168)
132 PF00025 Arf: ADP-ribosylation 99.9 9.8E-25 2.1E-29 175.8 15.6 156 81-248 12-175 (175)
133 cd01898 Obg Obg subfamily. Th 99.9 2E-24 4.3E-29 172.5 16.7 156 85-247 2-169 (170)
134 PRK12299 obgE GTPase CgtA; Rev 99.9 2.3E-24 4.9E-29 189.5 18.5 206 26-252 112-331 (335)
135 TIGR00231 small_GTP small GTP- 99.9 6E-24 1.3E-28 166.2 18.2 157 83-245 1-160 (161)
136 cd04171 SelB SelB subfamily. 99.9 3.3E-24 7.2E-29 169.9 16.4 153 85-246 2-163 (164)
137 TIGR02729 Obg_CgtA Obg family 99.9 9.8E-24 2.1E-28 185.3 18.8 205 26-248 111-328 (329)
138 cd04155 Arl3 Arl3 subfamily. 99.9 1E-23 2.2E-28 169.1 16.4 150 82-246 13-172 (173)
139 KOG0070 GTP-binding ADP-ribosy 99.9 6.2E-24 1.3E-28 166.3 12.7 165 80-251 14-180 (181)
140 cd01878 HflX HflX subfamily. 99.9 5.3E-23 1.2E-27 169.5 15.7 154 83-248 41-204 (204)
141 cd01879 FeoB Ferrous iron tran 99.9 8.9E-23 1.9E-27 160.8 16.2 148 88-248 1-156 (158)
142 PRK15494 era GTPase Era; Provi 99.9 1.5E-22 3.3E-27 178.9 18.8 170 80-265 49-232 (339)
143 cd01891 TypA_BipA TypA (tyrosi 99.9 5.1E-23 1.1E-27 168.5 14.6 150 84-240 3-173 (194)
144 PRK12297 obgE GTPase CgtA; Rev 99.9 2.1E-22 4.5E-27 181.4 19.7 207 26-253 112-331 (424)
145 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 9.1E-24 2E-28 165.1 9.1 165 81-252 8-172 (216)
146 KOG4423 GTP-binding protein-li 99.9 1.1E-25 2.3E-30 175.3 -1.9 167 80-252 22-197 (229)
147 PRK04213 GTP-binding protein; 99.9 5E-23 1.1E-27 169.3 13.7 152 82-252 8-195 (201)
148 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 3E-22 6.6E-27 159.4 16.4 158 85-249 2-166 (168)
149 PF08477 Miro: Miro-like prote 99.9 1.1E-22 2.5E-27 153.1 13.2 114 85-198 1-119 (119)
150 TIGR00436 era GTP-binding prot 99.9 6.3E-22 1.4E-26 170.1 18.5 167 85-264 2-179 (270)
151 KOG0075 GTP-binding ADP-ribosy 99.9 1.8E-23 3.8E-28 156.9 7.5 161 83-249 20-182 (186)
152 KOG3883 Ras family small GTPas 99.9 8.1E-22 1.8E-26 149.0 16.1 166 83-253 9-179 (198)
153 PRK12298 obgE GTPase CgtA; Rev 99.9 8.9E-22 1.9E-26 176.3 18.8 221 26-264 113-348 (390)
154 PRK03003 GTP-binding protein D 99.9 4.8E-22 1E-26 183.3 17.2 163 82-252 210-385 (472)
155 cd00882 Ras_like_GTPase Ras-li 99.9 1.7E-21 3.8E-26 150.6 16.9 153 88-245 1-156 (157)
156 PRK12296 obgE GTPase CgtA; Rev 99.9 1.4E-21 3.1E-26 178.2 18.4 208 26-252 113-343 (500)
157 TIGR00450 mnmE_trmE_thdF tRNA 99.9 3E-21 6.4E-26 175.7 17.6 152 82-251 202-362 (442)
158 TIGR03156 GTP_HflX GTP-binding 99.9 2.8E-21 6.2E-26 171.2 16.8 152 83-247 189-350 (351)
159 cd01889 SelB_euk SelB subfamil 99.9 4.4E-21 9.4E-26 156.8 15.1 161 84-250 1-187 (192)
160 cd00881 GTP_translation_factor 99.9 5.7E-21 1.2E-25 154.7 15.6 159 85-249 1-187 (189)
161 PRK15467 ethanolamine utilizat 99.9 1.6E-21 3.6E-26 154.4 12.1 140 85-251 3-149 (158)
162 cd01881 Obg_like The Obg-like 99.9 3.9E-21 8.5E-26 154.0 14.4 153 88-247 1-175 (176)
163 PRK00454 engB GTP-binding prot 99.9 9.7E-21 2.1E-25 154.8 16.8 159 81-250 22-195 (196)
164 KOG0071 GTP-binding ADP-ribosy 99.9 4.6E-21 9.9E-26 142.9 13.0 157 82-250 16-179 (180)
165 PF02421 FeoB_N: Ferrous iron 99.9 1.9E-21 4.2E-26 152.0 11.5 148 84-244 1-156 (156)
166 PRK03003 GTP-binding protein D 99.9 7E-21 1.5E-25 175.6 16.6 154 84-251 39-201 (472)
167 TIGR01393 lepA GTP-binding pro 99.9 9.6E-21 2.1E-25 178.1 17.7 158 84-251 4-182 (595)
168 cd04164 trmE TrmE (MnmE, ThdF, 99.9 2.2E-20 4.8E-25 146.6 16.5 146 84-248 2-156 (157)
169 PRK05291 trmE tRNA modificatio 99.9 9.6E-21 2.1E-25 173.2 16.1 148 83-250 215-371 (449)
170 TIGR03594 GTPase_EngA ribosome 99.9 3.9E-20 8.5E-25 169.1 18.4 163 82-251 171-346 (429)
171 TIGR03598 GTPase_YsxC ribosome 99.9 2.1E-20 4.5E-25 151.1 14.6 150 80-238 15-179 (179)
172 cd01894 EngA1 EngA1 subfamily. 99.8 4.6E-20 1E-24 144.8 15.1 146 87-248 1-157 (157)
173 cd04105 SR_beta Signal recogni 99.8 4.9E-20 1.1E-24 151.8 15.8 161 85-246 2-202 (203)
174 PRK11058 GTPase HflX; Provisio 99.8 5.7E-20 1.2E-24 166.4 17.2 157 84-251 198-364 (426)
175 TIGR00475 selB selenocysteine- 99.8 7.9E-20 1.7E-24 171.7 17.4 158 84-252 1-169 (581)
176 TIGR00437 feoB ferrous iron tr 99.8 7.5E-20 1.6E-24 172.1 16.6 146 90-248 1-154 (591)
177 PRK00089 era GTPase Era; Revie 99.8 2.5E-19 5.4E-24 155.8 18.4 172 82-264 4-186 (292)
178 TIGR00487 IF-2 translation ini 99.8 1.5E-19 3.2E-24 169.4 17.6 154 82-246 86-247 (587)
179 cd01895 EngA2 EngA2 subfamily. 99.8 4.6E-19 1E-23 141.1 18.1 156 83-247 2-173 (174)
180 cd01888 eIF2_gamma eIF2-gamma 99.8 3.2E-19 6.9E-24 147.0 14.8 160 84-251 1-201 (203)
181 PRK00093 GTP-binding protein D 99.8 4.1E-19 8.9E-24 162.6 16.6 148 84-248 2-161 (435)
182 CHL00189 infB translation init 99.8 4.1E-19 8.9E-24 168.9 16.4 157 82-248 243-409 (742)
183 cd04163 Era Era subfamily. Er 99.8 1.2E-18 2.6E-23 137.5 16.3 156 83-247 3-167 (168)
184 PRK09518 bifunctional cytidyla 99.8 6.3E-19 1.4E-23 169.8 17.1 161 83-251 450-623 (712)
185 cd01876 YihA_EngB The YihA (En 99.8 9.8E-19 2.1E-23 138.5 15.3 153 85-248 1-170 (170)
186 PRK05306 infB translation init 99.8 1.1E-18 2.4E-23 167.3 17.5 155 81-247 288-450 (787)
187 PRK09554 feoB ferrous iron tra 99.8 1.5E-18 3.3E-23 167.0 18.4 153 83-248 3-167 (772)
188 PRK00093 GTP-binding protein D 99.8 1.6E-18 3.5E-23 158.7 17.0 161 82-250 172-345 (435)
189 KOG0074 GTP-binding ADP-ribosy 99.8 3.1E-19 6.7E-24 133.3 9.9 159 80-248 14-178 (185)
190 KOG0076 GTP-binding ADP-ribosy 99.8 1.2E-19 2.7E-24 140.1 6.9 159 82-251 16-189 (197)
191 TIGR03594 GTPase_EngA ribosome 99.8 2.8E-18 6E-23 156.9 16.8 150 85-251 1-162 (429)
192 PRK05433 GTP-binding protein L 99.8 2.7E-18 5.9E-23 161.7 17.1 158 84-251 8-186 (600)
193 cd01896 DRG The developmentall 99.8 7.2E-18 1.6E-22 141.7 17.3 150 85-248 2-225 (233)
194 KOG1707 Predicted Ras related/ 99.8 7.6E-19 1.7E-23 158.4 11.0 166 80-251 6-177 (625)
195 cd00880 Era_like Era (E. coli 99.8 6E-18 1.3E-22 132.1 14.7 153 88-247 1-162 (163)
196 PRK09518 bifunctional cytidyla 99.8 1.1E-17 2.3E-22 161.4 18.5 156 82-251 274-438 (712)
197 KOG0072 GTP-binding ADP-ribosy 99.8 6.8E-19 1.5E-23 131.9 7.9 161 82-251 17-181 (182)
198 TIGR00491 aIF-2 translation in 99.8 6.5E-18 1.4E-22 158.1 16.0 158 84-247 5-214 (590)
199 TIGR00483 EF-1_alpha translati 99.8 4.3E-18 9.4E-23 155.3 12.5 157 81-241 5-199 (426)
200 PRK10218 GTP-binding protein; 99.8 3.7E-17 8E-22 153.5 17.6 162 83-251 5-197 (607)
201 COG1159 Era GTPase [General fu 99.8 4.5E-17 9.7E-22 137.3 16.2 174 81-265 4-188 (298)
202 PRK12317 elongation factor 1-a 99.8 1.1E-17 2.3E-22 152.8 13.3 159 81-241 4-197 (425)
203 COG2229 Predicted GTPase [Gene 99.7 6.4E-17 1.4E-21 126.8 15.3 156 80-247 7-176 (187)
204 PRK10512 selenocysteinyl-tRNA- 99.7 7E-17 1.5E-21 152.5 17.4 156 85-250 2-167 (614)
205 cd04167 Snu114p Snu114p subfam 99.7 2.1E-17 4.4E-22 137.3 12.2 151 85-238 2-192 (213)
206 PF00009 GTP_EFTU: Elongation 99.7 1.7E-17 3.7E-22 135.1 11.0 160 83-249 3-187 (188)
207 TIGR01394 TypA_BipA GTP-bindin 99.7 4.7E-17 1E-21 152.9 15.0 160 85-251 3-193 (594)
208 PRK04004 translation initiatio 99.7 1.2E-16 2.6E-21 150.1 16.7 158 83-246 6-215 (586)
209 TIGR03680 eif2g_arch translati 99.7 8E-17 1.7E-21 145.9 14.7 164 82-249 3-196 (406)
210 cd04166 CysN_ATPS CysN_ATPS su 99.7 6E-17 1.3E-21 134.0 12.7 152 85-240 1-185 (208)
211 COG1160 Predicted GTPases [Gen 99.7 4.3E-16 9.4E-21 138.2 16.9 162 82-251 177-353 (444)
212 PRK04000 translation initiatio 99.7 1.8E-16 3.9E-21 143.6 14.9 163 80-250 6-202 (411)
213 KOG1423 Ras-like GTPase ERA [C 99.7 2.2E-16 4.7E-21 132.8 13.7 184 78-264 67-286 (379)
214 COG1160 Predicted GTPases [Gen 99.7 1.9E-16 4E-21 140.5 13.3 149 84-249 4-165 (444)
215 cd01850 CDC_Septin CDC/Septin. 99.7 5E-16 1.1E-20 133.6 14.2 145 83-233 4-186 (276)
216 COG0370 FeoB Fe2+ transport sy 99.7 5.4E-16 1.2E-20 143.4 15.3 157 83-252 3-167 (653)
217 COG0486 ThdF Predicted GTPase 99.7 6.4E-16 1.4E-20 137.5 14.6 153 83-251 217-378 (454)
218 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 9.3E-16 2E-20 127.8 13.5 167 85-259 1-186 (232)
219 PF10662 PduV-EutP: Ethanolami 99.7 9.2E-16 2E-20 117.5 12.3 134 85-245 3-142 (143)
220 cd04104 p47_IIGP_like p47 (47- 99.7 1.7E-15 3.6E-20 124.3 14.2 162 83-252 1-187 (197)
221 COG0536 Obg Predicted GTPase [ 99.7 3.9E-15 8.6E-20 127.3 16.7 206 26-252 113-336 (369)
222 KOG1489 Predicted GTP-binding 99.7 5E-15 1.1E-19 125.2 16.2 198 26-247 150-365 (366)
223 cd04168 TetM_like Tet(M)-like 99.7 2.5E-15 5.5E-20 126.5 14.5 113 85-200 1-129 (237)
224 cd01884 EF_Tu EF-Tu subfamily. 99.7 5.6E-15 1.2E-19 120.8 16.0 150 83-238 2-172 (195)
225 COG0218 Predicted GTPase [Gene 99.7 5.9E-15 1.3E-19 118.2 15.2 161 79-250 20-198 (200)
226 cd04165 GTPBP1_like GTPBP1-lik 99.6 2.4E-15 5.2E-20 125.6 13.2 156 85-246 1-220 (224)
227 cd01883 EF1_alpha Eukaryotic e 99.6 2.6E-15 5.6E-20 125.2 12.6 152 85-238 1-194 (219)
228 KOG0077 Vesicle coat complex C 99.6 1.5E-15 3.2E-20 116.8 8.6 160 83-248 20-192 (193)
229 cd01885 EF2 EF2 (for archaea a 99.6 1E-14 2.2E-19 121.4 14.5 113 85-200 2-138 (222)
230 TIGR00485 EF-Tu translation el 99.6 1.2E-14 2.5E-19 131.4 14.9 150 80-235 9-179 (394)
231 smart00010 small_GTPase Small 99.6 6.2E-16 1.4E-20 116.7 5.5 113 84-238 1-115 (124)
232 PRK12735 elongation factor Tu; 99.6 2.1E-14 4.5E-19 129.8 16.2 164 80-249 9-203 (396)
233 cd01899 Ygr210 Ygr210 subfamil 99.6 2.8E-14 6E-19 124.7 16.2 81 86-166 1-110 (318)
234 PRK12736 elongation factor Tu; 99.6 2.6E-14 5.6E-19 129.1 16.1 163 81-249 10-201 (394)
235 cd04169 RF3 RF3 subfamily. Pe 99.6 5.5E-14 1.2E-18 120.4 15.1 113 84-199 3-135 (267)
236 PRK13351 elongation factor G; 99.6 3.8E-14 8.3E-19 136.6 14.5 116 82-200 7-138 (687)
237 PRK05124 cysN sulfate adenylyl 99.5 7.1E-14 1.5E-18 128.7 13.1 158 80-240 24-216 (474)
238 COG2262 HflX GTPases [General 99.5 3.1E-13 6.8E-18 118.5 16.2 159 83-252 192-359 (411)
239 cd04170 EF-G_bact Elongation f 99.5 1.4E-13 3E-18 118.2 13.4 145 85-239 1-163 (268)
240 TIGR02034 CysN sulfate adenyly 99.5 1.1E-13 2.5E-18 125.3 13.1 153 84-239 1-187 (406)
241 PRK09602 translation-associate 99.5 3.4E-13 7.3E-18 121.3 15.9 83 84-166 2-113 (396)
242 TIGR00503 prfC peptide chain r 99.5 2.8E-13 6.1E-18 126.0 15.8 117 81-200 9-145 (527)
243 PRK00741 prfC peptide chain re 99.5 2.8E-13 6.1E-18 126.0 15.5 117 81-200 8-144 (526)
244 KOG0462 Elongation factor-type 99.5 3.4E-13 7.3E-18 121.4 15.3 166 83-255 60-241 (650)
245 COG1084 Predicted GTPase [Gene 99.5 5.3E-13 1.1E-17 113.9 15.7 160 83-252 168-339 (346)
246 CHL00071 tufA elongation facto 99.5 4.8E-13 1E-17 121.5 16.4 151 81-237 10-181 (409)
247 PLN03126 Elongation factor Tu; 99.5 3.5E-13 7.5E-18 123.9 14.6 152 80-237 78-250 (478)
248 PLN00043 elongation factor 1-a 99.5 2.7E-13 5.8E-18 124.0 13.6 156 81-239 5-203 (447)
249 PRK05506 bifunctional sulfate 99.5 3E-13 6.5E-18 129.2 13.9 157 80-239 21-211 (632)
250 PF09439 SRPRB: Signal recogni 99.5 9.3E-14 2E-18 111.1 8.0 117 84-204 4-129 (181)
251 COG0532 InfB Translation initi 99.5 5.7E-13 1.2E-17 120.4 13.9 157 84-248 6-169 (509)
252 PRK00049 elongation factor Tu; 99.5 1.4E-12 3E-17 117.9 15.9 162 81-248 10-202 (396)
253 cd01886 EF-G Elongation factor 99.5 1E-12 2.2E-17 112.7 12.6 112 85-199 1-128 (270)
254 PF01926 MMR_HSR1: 50S ribosom 99.5 1.9E-12 4.2E-17 96.9 12.7 104 85-196 1-116 (116)
255 PF05783 DLIC: Dynein light in 99.5 3.4E-12 7.3E-17 116.5 16.5 180 83-265 25-280 (472)
256 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 3.1E-12 6.7E-17 104.8 14.7 160 84-250 1-185 (196)
257 TIGR00157 ribosome small subun 99.4 6.5E-13 1.4E-17 112.4 11.0 96 143-246 24-120 (245)
258 KOG3905 Dynein light intermedi 99.4 2.9E-12 6.2E-17 108.9 14.2 172 83-257 52-298 (473)
259 KOG1191 Mitochondrial GTPase [ 99.4 1E-12 2.3E-17 117.1 11.9 165 80-251 265-452 (531)
260 COG1163 DRG Predicted GTPase [ 99.4 7.4E-12 1.6E-16 106.6 16.2 154 84-251 64-291 (365)
261 PLN03127 Elongation factor Tu; 99.4 7.5E-12 1.6E-16 114.5 17.4 162 80-249 58-252 (447)
262 PTZ00327 eukaryotic translatio 99.4 3.4E-12 7.4E-17 116.7 14.2 166 80-250 31-234 (460)
263 COG0481 LepA Membrane GTPase L 99.4 3.1E-12 6.8E-17 113.6 13.3 162 84-252 10-189 (603)
264 PRK14845 translation initiatio 99.4 6.6E-12 1.4E-16 123.6 15.5 148 94-247 472-671 (1049)
265 KOG1707 Predicted Ras related/ 99.4 9.8E-12 2.1E-16 112.9 15.3 168 76-252 418-586 (625)
266 PTZ00141 elongation factor 1- 99.4 6.8E-12 1.5E-16 114.8 14.6 157 81-239 5-203 (446)
267 TIGR00484 EF-G translation elo 99.4 7.2E-12 1.6E-16 120.8 14.3 114 83-199 10-139 (689)
268 KOG1490 GTP-binding protein CR 99.4 1.3E-12 2.8E-17 116.6 8.0 164 84-252 169-344 (620)
269 KOG0090 Signal recognition par 99.4 8.7E-12 1.9E-16 100.2 11.2 158 84-247 39-237 (238)
270 PRK12740 elongation factor G; 99.3 1.5E-11 3.3E-16 118.4 14.4 107 89-200 1-125 (668)
271 KOG1145 Mitochondrial translat 99.3 1.6E-11 3.5E-16 110.8 12.5 160 83-252 153-319 (683)
272 PRK12739 elongation factor G; 99.3 2.2E-11 4.8E-16 117.4 14.1 114 82-200 7-138 (691)
273 COG3596 Predicted GTPase [Gene 99.3 1.8E-11 3.9E-16 102.3 11.2 169 81-252 37-225 (296)
274 TIGR00490 aEF-2 translation el 99.3 1.3E-11 2.9E-16 119.3 11.8 116 82-200 18-151 (720)
275 TIGR00101 ureG urease accessor 99.3 3.9E-11 8.4E-16 98.4 12.4 104 133-249 93-196 (199)
276 PRK13768 GTPase; Provisional 99.3 2.2E-11 4.7E-16 103.6 10.9 115 133-250 98-248 (253)
277 COG5256 TEF1 Translation elong 99.3 3.7E-11 8E-16 105.6 11.7 159 81-240 5-202 (428)
278 PRK00007 elongation factor G; 99.3 7.2E-11 1.6E-15 113.9 14.8 114 82-200 9-140 (693)
279 KOG0705 GTPase-activating prot 99.3 1.2E-11 2.5E-16 111.4 8.2 167 75-252 22-192 (749)
280 KOG3886 GTP-binding protein [S 99.3 4.9E-12 1.1E-16 102.8 5.2 170 83-257 4-186 (295)
281 PRK09866 hypothetical protein; 99.3 2.3E-10 4.9E-15 106.3 16.3 108 133-246 231-350 (741)
282 cd00066 G-alpha G protein alph 99.3 1.6E-10 3.5E-15 101.5 14.6 123 130-252 159-314 (317)
283 COG4917 EutP Ethanolamine util 99.2 3.6E-11 7.9E-16 88.5 8.0 136 85-246 3-143 (148)
284 COG1217 TypA Predicted membran 99.2 2.4E-10 5.3E-15 101.5 14.0 163 84-253 6-199 (603)
285 PTZ00258 GTP-binding protein; 99.2 9.4E-10 2E-14 98.3 14.9 85 82-166 20-126 (390)
286 TIGR00991 3a0901s02IAP34 GTP-b 99.1 9.5E-10 2.1E-14 94.9 12.7 116 80-199 35-165 (313)
287 PF04548 AIG1: AIG1 family; I 99.1 9E-10 1.9E-14 91.4 12.0 162 84-252 1-189 (212)
288 TIGR00073 hypB hydrogenase acc 99.1 1.4E-09 3E-14 89.9 12.9 151 83-248 22-206 (207)
289 PRK09601 GTP-binding protein Y 99.1 2.3E-09 5.1E-14 94.8 14.8 83 84-166 3-107 (364)
290 cd01853 Toc34_like Toc34-like 99.1 4.9E-09 1.1E-13 88.8 16.0 116 80-199 28-161 (249)
291 PRK09435 membrane ATPase/prote 99.1 3.5E-09 7.5E-14 93.0 14.2 105 132-249 149-260 (332)
292 cd01882 BMS1 Bms1. Bms1 is an 99.1 3.1E-09 6.7E-14 88.9 13.3 139 83-235 39-182 (225)
293 COG2895 CysN GTPases - Sulfate 99.1 2.1E-09 4.6E-14 92.7 12.0 152 82-238 5-192 (431)
294 PRK07560 elongation factor EF- 99.0 3.5E-09 7.5E-14 102.9 13.7 115 83-200 20-152 (731)
295 PF00735 Septin: Septin; Inte 99.0 6E-09 1.3E-13 89.8 12.5 141 83-229 4-181 (281)
296 cd01855 YqeH YqeH. YqeH is an 99.0 1.6E-09 3.4E-14 88.3 8.3 94 145-249 24-125 (190)
297 TIGR02836 spore_IV_A stage IV 99.0 1.9E-08 4.1E-13 89.4 15.2 157 83-248 17-236 (492)
298 cd01900 YchF YchF subfamily. 99.0 4.5E-09 9.7E-14 90.0 10.6 81 86-166 1-103 (274)
299 PLN00116 translation elongatio 98.9 5.7E-09 1.2E-13 102.7 10.0 115 82-199 18-162 (843)
300 PTZ00416 elongation factor 2; 98.9 5.9E-09 1.3E-13 102.4 10.1 114 83-199 19-156 (836)
301 TIGR03597 GTPase_YqeH ribosome 98.9 4.5E-09 9.7E-14 93.9 8.3 98 142-247 50-151 (360)
302 PF03029 ATP_bind_1: Conserved 98.9 4.5E-09 9.7E-14 88.5 6.8 110 133-247 92-235 (238)
303 TIGR00750 lao LAO/AO transport 98.9 8.6E-08 1.9E-12 83.7 14.5 106 131-249 126-238 (300)
304 KOG1144 Translation initiation 98.8 2.1E-08 4.4E-13 93.7 10.7 163 80-248 472-686 (1064)
305 PF00350 Dynamin_N: Dynamin fa 98.8 4.6E-08 1E-12 77.7 11.5 62 134-197 103-168 (168)
306 COG0012 Predicted GTPase, prob 98.8 1.5E-07 3.2E-12 82.5 15.2 82 83-166 2-108 (372)
307 KOG0461 Selenocysteine-specifi 98.8 9.8E-08 2.1E-12 82.3 13.6 161 83-253 7-197 (522)
308 PRK00098 GTPase RsgA; Reviewed 98.8 1.9E-08 4.2E-13 87.6 9.5 86 152-245 77-163 (298)
309 smart00275 G_alpha G protein a 98.8 9.9E-08 2.1E-12 84.6 13.9 136 113-252 169-337 (342)
310 PRK12289 GTPase RsgA; Reviewed 98.8 2.9E-08 6.3E-13 88.1 10.3 92 146-246 80-172 (352)
311 KOG0458 Elongation factor 1 al 98.8 1.2E-07 2.6E-12 86.7 14.0 160 79-240 173-373 (603)
312 cd01859 MJ1464 MJ1464. This f 98.8 2.7E-08 5.8E-13 78.3 8.4 95 146-250 3-97 (156)
313 TIGR00993 3a0901s04IAP86 chlor 98.8 7.7E-08 1.7E-12 90.1 12.5 114 82-199 117-248 (763)
314 KOG1532 GTPase XAB1, interacts 98.8 7.6E-08 1.6E-12 80.6 11.2 114 132-251 116-266 (366)
315 COG5257 GCD11 Translation init 98.8 3.4E-08 7.4E-13 84.3 9.3 169 81-253 8-206 (415)
316 COG0378 HypB Ni2+-binding GTPa 98.8 5.9E-08 1.3E-12 77.6 9.6 148 83-248 13-200 (202)
317 cd01854 YjeQ_engC YjeQ/EngC. 98.8 4.3E-08 9.3E-13 85.0 9.6 89 149-246 72-161 (287)
318 PF05049 IIGP: Interferon-indu 98.8 8.3E-08 1.8E-12 85.1 11.1 164 82-252 34-221 (376)
319 KOG1486 GTP-binding protein DR 98.7 5.2E-07 1.1E-11 74.8 14.1 152 83-249 62-288 (364)
320 COG5019 CDC3 Septin family pro 98.7 1.9E-07 4.2E-12 81.3 12.0 141 82-228 22-200 (373)
321 PRK12288 GTPase RsgA; Reviewed 98.7 9.5E-08 2.1E-12 84.7 10.3 88 153-246 118-205 (347)
322 KOG0410 Predicted GTP binding 98.7 6.9E-08 1.5E-12 82.6 8.9 147 84-250 179-342 (410)
323 KOG0082 G-protein alpha subuni 98.7 1E-07 2.2E-12 83.6 10.2 122 131-252 194-347 (354)
324 PRK10463 hydrogenase nickel in 98.6 1.3E-07 2.7E-12 81.3 8.3 55 189-247 232-287 (290)
325 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 8.2E-08 1.8E-12 74.4 6.5 54 85-142 85-138 (141)
326 COG3276 SelB Selenocysteine-sp 98.6 4.2E-07 9.2E-12 80.9 11.7 154 86-249 3-162 (447)
327 smart00053 DYNc Dynamin, GTPas 98.6 6.1E-07 1.3E-11 75.5 12.0 25 83-107 26-50 (240)
328 KOG2655 Septin family protein 98.6 1E-06 2.2E-11 77.4 13.7 144 83-232 21-200 (366)
329 KOG1547 Septin CDC10 and relat 98.6 6.6E-07 1.4E-11 73.7 10.7 143 83-232 46-226 (336)
330 KOG4273 Uncharacterized conser 98.6 9.2E-07 2E-11 73.2 11.6 163 85-248 6-221 (418)
331 COG0480 FusA Translation elong 98.5 7.2E-07 1.6E-11 85.4 10.9 113 83-199 10-140 (697)
332 KOG3887 Predicted small GTPase 98.5 1.6E-06 3.5E-11 71.5 10.9 167 84-257 28-210 (347)
333 cd01858 NGP_1 NGP-1. Autoanti 98.5 7.7E-07 1.7E-11 70.1 8.6 89 151-248 4-94 (157)
334 KOG0468 U5 snRNP-specific prot 98.5 5.3E-07 1.2E-11 83.6 8.7 116 80-199 125-261 (971)
335 KOG2486 Predicted GTPase [Gene 98.5 4E-07 8.7E-12 76.5 6.5 162 76-246 129-313 (320)
336 cd01856 YlqF YlqF. Proteins o 98.5 5.2E-07 1.1E-11 72.2 7.0 57 82-142 114-170 (171)
337 cd01859 MJ1464 MJ1464. This f 98.4 5.9E-07 1.3E-11 70.6 7.0 55 83-141 101-155 (156)
338 cd01849 YlqF_related_GTPase Yl 98.4 1.6E-06 3.5E-11 68.1 9.2 84 157-248 1-84 (155)
339 COG4108 PrfC Peptide chain rel 98.4 3.3E-06 7.2E-11 75.1 11.5 134 82-225 11-164 (528)
340 PRK13796 GTPase YqeH; Provisio 98.4 1.5E-06 3.2E-11 77.9 8.9 95 144-247 58-157 (365)
341 COG5258 GTPBP1 GTPase [General 98.4 6.7E-06 1.4E-10 72.2 12.3 158 80-243 114-333 (527)
342 PF03308 ArgK: ArgK protein; 98.4 1.2E-06 2.5E-11 73.6 6.9 96 133-246 123-227 (266)
343 cd04178 Nucleostemin_like Nucl 98.3 1.3E-06 2.8E-11 70.0 6.7 54 83-141 117-171 (172)
344 cd01858 NGP_1 NGP-1. Autoanti 98.3 1.6E-06 3.6E-11 68.2 7.1 54 83-141 102-156 (157)
345 COG0050 TufB GTPases - transla 98.3 5.2E-06 1.1E-10 70.4 9.3 163 80-251 9-203 (394)
346 TIGR03596 GTPase_YlqF ribosome 98.2 3E-06 6.5E-11 73.1 7.3 56 82-142 117-173 (276)
347 PRK09563 rbgA GTPase YlqF; Rev 98.2 4.5E-06 9.9E-11 72.4 7.9 57 82-143 120-177 (287)
348 cd01856 YlqF YlqF. Proteins o 98.2 4.1E-06 9E-11 66.9 7.0 92 146-249 10-101 (171)
349 COG1703 ArgK Putative periplas 98.2 1.5E-05 3.2E-10 68.1 10.4 104 132-249 144-254 (323)
350 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 6.5E-06 1.4E-10 63.6 7.6 76 151-236 7-84 (141)
351 cd01855 YqeH YqeH. YqeH is an 98.2 2.9E-06 6.3E-11 69.0 5.8 53 84-141 128-189 (190)
352 KOG1954 Endocytosis/signaling 98.2 1.2E-05 2.7E-10 70.2 9.2 111 84-199 59-223 (532)
353 KOG1143 Predicted translation 98.1 2.2E-05 4.7E-10 68.7 10.4 161 80-243 164-382 (591)
354 COG1161 Predicted GTPases [Gen 98.1 5E-06 1.1E-10 73.2 6.7 56 82-142 131-187 (322)
355 TIGR00092 GTP-binding protein 98.1 1.1E-05 2.3E-10 71.8 8.4 83 84-166 3-108 (368)
356 TIGR03348 VI_IcmF type VI secr 98.1 1.7E-05 3.6E-10 81.1 10.7 109 86-199 114-255 (1169)
357 KOG0448 Mitofusin 1 GTPase, in 98.1 6.3E-05 1.4E-09 70.5 12.8 114 81-199 107-273 (749)
358 KOG1491 Predicted GTP-binding 98.0 1.7E-05 3.7E-10 68.6 7.8 85 82-166 19-125 (391)
359 TIGR03596 GTPase_YlqF ribosome 98.0 2.7E-05 5.8E-10 67.2 8.9 91 149-251 15-105 (276)
360 cd01851 GBP Guanylate-binding 97.9 4.8E-05 1E-09 63.6 8.4 86 83-169 7-105 (224)
361 cd01849 YlqF_related_GTPase Yl 97.9 2.7E-05 5.8E-10 61.2 6.2 55 82-141 99-154 (155)
362 PRK10416 signal recognition pa 97.9 4.1E-05 8.8E-10 67.3 7.5 93 131-240 196-301 (318)
363 PRK01889 GTPase RsgA; Reviewed 97.9 8.3E-05 1.8E-09 66.5 9.6 85 152-245 109-193 (356)
364 PRK09563 rbgA GTPase YlqF; Rev 97.9 7.8E-05 1.7E-09 64.7 8.7 91 149-251 18-108 (287)
365 KOG3859 Septins (P-loop GTPase 97.9 5.9E-05 1.3E-09 63.7 7.4 60 82-141 41-104 (406)
366 PF03193 DUF258: Protein of un 97.8 2.1E-05 4.5E-10 62.0 4.1 23 85-107 37-59 (161)
367 KOG0460 Mitochondrial translat 97.8 0.0002 4.2E-09 62.2 10.1 150 80-235 51-224 (449)
368 PRK12288 GTPase RsgA; Reviewed 97.8 5.1E-05 1.1E-09 67.5 6.9 58 86-146 208-271 (347)
369 KOG0463 GTP-binding protein GP 97.8 0.00023 4.9E-09 62.6 10.6 29 77-105 127-155 (641)
370 cd03112 CobW_like The function 97.8 0.00011 2.3E-09 58.0 7.8 63 132-199 87-158 (158)
371 TIGR00064 ftsY signal recognit 97.8 5.8E-05 1.3E-09 64.9 6.6 95 131-241 154-260 (272)
372 PF00503 G-alpha: G-protein al 97.8 0.00021 4.6E-09 64.7 10.4 119 130-248 234-389 (389)
373 PRK13695 putative NTPase; Prov 97.7 0.00062 1.4E-08 54.4 11.7 22 84-105 1-22 (174)
374 KOG0467 Translation elongation 97.7 0.0001 2.2E-09 69.8 8.0 111 81-198 7-135 (887)
375 KOG3929 Uncharacterized conser 97.7 1.5E-05 3.3E-10 66.4 2.3 171 80-253 42-256 (363)
376 COG1162 Predicted GTPases [Gen 97.7 0.00033 7.2E-09 60.3 10.3 93 147-246 71-164 (301)
377 TIGR00157 ribosome small subun 97.7 7.1E-05 1.5E-09 63.4 6.2 58 84-145 121-184 (245)
378 COG5192 BMS1 GTP-binding prote 97.7 0.00036 7.8E-09 64.3 10.5 141 80-233 66-210 (1077)
379 TIGR03597 GTPase_YqeH ribosome 97.7 8.3E-05 1.8E-09 66.6 6.5 56 84-144 155-216 (360)
380 PRK13796 GTPase YqeH; Provisio 97.7 6.8E-05 1.5E-09 67.3 5.9 55 84-143 161-221 (365)
381 PRK14974 cell division protein 97.7 0.00037 8E-09 61.6 10.0 92 132-241 223-322 (336)
382 PRK12289 GTPase RsgA; Reviewed 97.6 9.9E-05 2.1E-09 65.7 6.0 57 85-144 174-236 (352)
383 KOG0466 Translation initiation 97.6 4.9E-05 1.1E-09 64.9 3.6 163 82-252 37-244 (466)
384 TIGR01425 SRP54_euk signal rec 97.6 0.0005 1.1E-08 62.6 10.1 139 84-239 101-280 (429)
385 COG1162 Predicted GTPases [Gen 97.6 0.00014 2.9E-09 62.7 6.0 57 85-145 166-229 (301)
386 PRK14722 flhF flagellar biosyn 97.6 0.00065 1.4E-08 60.8 9.9 154 84-250 138-338 (374)
387 COG1618 Predicted nucleotide k 97.5 0.0044 9.6E-08 48.5 12.8 56 82-140 4-59 (179)
388 cd03115 SRP The signal recogni 97.5 0.00085 1.8E-08 53.5 9.1 83 132-228 83-171 (173)
389 cd01854 YjeQ_engC YjeQ/EngC. 97.4 0.0004 8.6E-09 60.3 6.7 59 84-145 162-226 (287)
390 cd02038 FleN-like FleN is a me 97.4 0.0012 2.7E-08 50.8 8.5 104 88-198 5-108 (139)
391 PRK12727 flagellar biosynthesi 97.4 0.0018 3.9E-08 60.2 10.5 136 84-237 351-523 (559)
392 PRK00771 signal recognition pa 97.3 0.00029 6.3E-09 64.5 5.2 91 133-240 177-274 (437)
393 PRK00098 GTPase RsgA; Reviewed 97.3 0.00045 9.7E-09 60.3 6.0 24 84-107 165-188 (298)
394 PF06858 NOG1: Nucleolar GTP-b 97.3 0.001 2.2E-08 42.6 5.9 44 155-198 13-58 (58)
395 cd02042 ParA ParA and ParB of 97.3 0.0011 2.5E-08 48.0 6.8 82 86-179 2-84 (104)
396 COG3640 CooC CO dehydrogenase 97.3 0.0056 1.2E-07 50.8 11.1 76 134-225 136-212 (255)
397 cd03114 ArgK-like The function 97.2 0.002 4.4E-08 50.2 8.1 58 131-198 91-148 (148)
398 COG1419 FlhF Flagellar GTP-bin 97.2 0.002 4.4E-08 57.6 9.0 153 83-252 203-397 (407)
399 PF09547 Spore_IV_A: Stage IV 97.2 0.017 3.7E-07 52.1 14.6 156 83-247 17-235 (492)
400 KOG1424 Predicted GTP-binding 97.2 0.00047 1E-08 62.9 4.7 57 83-143 314-370 (562)
401 cd02036 MinD Bacterial cell di 97.2 0.007 1.5E-07 48.1 10.9 83 133-227 64-147 (179)
402 PRK10867 signal recognition pa 97.2 0.0012 2.6E-08 60.3 7.1 91 132-239 184-281 (433)
403 COG1126 GlnQ ABC-type polar am 97.1 0.00085 1.9E-08 55.0 5.2 39 213-251 146-186 (240)
404 KOG0464 Elongation factor G [T 97.1 0.0011 2.4E-08 59.0 6.2 132 84-226 38-186 (753)
405 TIGR00959 ffh signal recogniti 97.1 0.0012 2.7E-08 60.2 6.7 92 132-240 183-281 (428)
406 PRK14723 flhF flagellar biosyn 97.1 0.0027 5.7E-08 61.7 8.8 104 132-250 264-380 (767)
407 COG3523 IcmF Type VI protein s 97.0 0.0028 6E-08 64.1 8.5 108 86-199 128-268 (1188)
408 KOG0085 G protein subunit Galp 97.0 0.00067 1.5E-08 56.0 3.5 123 130-252 197-352 (359)
409 PRK11889 flhF flagellar biosyn 97.0 0.0034 7.4E-08 56.5 8.1 139 84-239 242-418 (436)
410 PF03266 NTPase_1: NTPase; In 97.0 0.00075 1.6E-08 53.8 3.6 133 85-237 1-163 (168)
411 PRK06995 flhF flagellar biosyn 97.0 0.0041 9E-08 57.5 8.9 102 133-251 336-449 (484)
412 PRK14721 flhF flagellar biosyn 97.0 0.0049 1.1E-07 56.1 9.1 149 84-250 192-383 (420)
413 KOG0465 Mitochondrial elongati 97.0 0.0049 1.1E-07 57.5 9.1 112 85-199 41-168 (721)
414 KOG1487 GTP-binding protein DR 97.0 0.0026 5.7E-08 53.5 6.7 89 84-175 60-156 (358)
415 PRK12726 flagellar biosynthesi 96.9 0.0039 8.5E-08 55.8 8.1 92 132-239 286-383 (407)
416 COG0523 Putative GTPases (G3E 96.9 0.041 9E-07 48.5 14.1 97 133-242 86-194 (323)
417 KOG0447 Dynamin-like GTP bindi 96.9 0.015 3.2E-07 53.8 11.2 65 133-200 413-492 (980)
418 cd00009 AAA The AAA+ (ATPases 96.8 0.0057 1.2E-07 46.2 7.4 24 84-107 20-43 (151)
419 cd03222 ABC_RNaseL_inhibitor T 96.8 0.012 2.7E-07 47.2 9.2 86 84-182 26-118 (177)
420 cd03111 CpaE_like This protein 96.8 0.0058 1.3E-07 44.7 6.6 101 87-196 3-106 (106)
421 PRK11537 putative GTP-binding 96.7 0.033 7.2E-07 49.1 12.1 95 132-241 91-196 (318)
422 PF13207 AAA_17: AAA domain; P 96.7 0.0015 3.3E-08 48.6 3.0 22 85-106 1-22 (121)
423 KOG0459 Polypeptide release fa 96.7 0.0066 1.4E-07 54.1 7.3 162 81-242 77-279 (501)
424 PRK08118 topology modulation p 96.6 0.0016 3.4E-08 51.9 2.9 23 84-106 2-24 (167)
425 PRK08099 bifunctional DNA-bind 96.6 0.0059 1.3E-07 55.4 7.0 24 83-106 219-242 (399)
426 PRK05703 flhF flagellar biosyn 96.6 0.015 3.3E-07 53.3 9.6 103 132-251 300-415 (424)
427 KOG2485 Conserved ATP/GTP bind 96.6 0.0041 8.9E-08 53.6 5.5 58 82-142 142-206 (335)
428 KOG0469 Elongation factor 2 [T 96.6 0.0056 1.2E-07 56.0 6.6 111 85-198 21-161 (842)
429 PRK12724 flagellar biosynthesi 96.6 0.011 2.4E-07 53.7 8.3 132 84-230 224-393 (432)
430 cd01983 Fer4_NifH The Fer4_Nif 96.5 0.015 3.2E-07 40.8 7.3 76 86-176 2-78 (99)
431 PRK07261 topology modulation p 96.5 0.002 4.4E-08 51.4 3.0 22 85-106 2-23 (171)
432 TIGR02475 CobW cobalamin biosy 96.5 0.069 1.5E-06 47.5 12.9 21 86-106 7-27 (341)
433 PF13521 AAA_28: AAA domain; P 96.5 0.0019 4E-08 51.0 2.7 22 85-106 1-22 (163)
434 COG0563 Adk Adenylate kinase a 96.5 0.0021 4.5E-08 51.7 3.0 23 84-106 1-23 (178)
435 PRK12723 flagellar biosynthesi 96.5 0.03 6.6E-07 50.6 10.5 106 131-252 254-371 (388)
436 PF13671 AAA_33: AAA domain; P 96.5 0.0023 4.9E-08 49.1 2.8 20 86-105 2-21 (143)
437 cd03110 Fer4_NifH_child This p 96.4 0.03 6.4E-07 44.8 9.3 86 130-228 91-176 (179)
438 PRK06731 flhF flagellar biosyn 96.4 0.023 4.9E-07 48.8 9.0 138 84-238 76-251 (270)
439 COG1116 TauB ABC-type nitrate/ 96.4 0.0028 6.2E-08 53.0 3.0 22 85-106 31-52 (248)
440 smart00072 GuKc Guanylate kina 96.3 0.02 4.4E-07 46.1 7.8 22 86-107 5-26 (184)
441 KOG2484 GTPase [General functi 96.3 0.0046 9.9E-08 54.9 4.2 58 80-142 249-307 (435)
442 PF11111 CENP-M: Centromere pr 96.3 0.26 5.6E-06 39.1 13.2 141 80-248 12-152 (176)
443 PF00005 ABC_tran: ABC transpo 96.2 0.0038 8.3E-08 47.5 3.0 23 85-107 13-35 (137)
444 cd04178 Nucleostemin_like Nucl 96.2 0.017 3.6E-07 46.2 6.7 42 157-199 1-42 (172)
445 PF13555 AAA_29: P-loop contai 96.2 0.0056 1.2E-07 40.1 3.0 21 85-105 25-45 (62)
446 cd02019 NK Nucleoside/nucleoti 96.1 0.0049 1.1E-07 41.3 2.7 21 86-106 2-22 (69)
447 PRK06217 hypothetical protein; 96.0 0.0057 1.2E-07 49.3 3.2 23 84-106 2-24 (183)
448 TIGR00150 HI0065_YjeE ATPase, 96.0 0.02 4.4E-07 43.6 5.9 22 85-106 24-45 (133)
449 PF00004 AAA: ATPase family as 96.0 0.0051 1.1E-07 46.1 2.7 21 86-106 1-21 (132)
450 smart00382 AAA ATPases associa 96.0 0.0064 1.4E-07 45.5 3.2 25 84-108 3-27 (148)
451 PF07015 VirC1: VirC1 protein; 96.0 0.064 1.4E-06 44.7 9.2 101 132-242 84-187 (231)
452 PF13238 AAA_18: AAA domain; P 95.9 0.0065 1.4E-07 45.4 2.8 21 86-106 1-21 (129)
453 COG1117 PstB ABC-type phosphat 95.9 0.013 2.9E-07 48.1 4.6 18 86-103 36-53 (253)
454 COG1136 SalX ABC-type antimicr 95.9 0.0068 1.5E-07 50.4 3.0 22 85-106 33-54 (226)
455 PRK10078 ribose 1,5-bisphospho 95.9 0.0069 1.5E-07 49.0 3.0 22 85-106 4-25 (186)
456 PF07728 AAA_5: AAA domain (dy 95.9 0.0066 1.4E-07 46.4 2.7 20 86-105 2-21 (139)
457 PLN03025 replication factor C 95.9 0.062 1.3E-06 47.3 9.2 23 85-107 36-58 (319)
458 cd00071 GMPK Guanosine monopho 95.9 0.0075 1.6E-07 46.3 2.9 21 86-106 2-22 (137)
459 KOG0099 G protein subunit Galp 95.8 0.043 9.2E-07 46.4 7.4 69 131-199 201-281 (379)
460 PRK01889 GTPase RsgA; Reviewed 95.8 0.011 2.4E-07 53.0 4.2 23 84-106 196-218 (356)
461 TIGR02322 phosphon_PhnN phosph 95.8 0.0073 1.6E-07 48.3 2.8 22 85-106 3-24 (179)
462 COG4525 TauB ABC-type taurine 95.8 0.0079 1.7E-07 48.8 2.8 21 85-105 33-53 (259)
463 PF03205 MobB: Molybdopterin g 95.8 0.0071 1.5E-07 46.6 2.5 22 85-106 2-23 (140)
464 COG3839 MalK ABC-type sugar tr 95.8 0.0077 1.7E-07 53.1 3.0 21 86-106 32-52 (338)
465 PRK14737 gmk guanylate kinase; 95.8 0.0096 2.1E-07 48.2 3.4 22 85-106 6-27 (186)
466 PRK03839 putative kinase; Prov 95.8 0.0077 1.7E-07 48.3 2.8 22 85-106 2-23 (180)
467 KOG0066 eIF2-interacting prote 95.7 0.065 1.4E-06 48.7 8.5 24 83-106 613-636 (807)
468 TIGR03263 guanyl_kin guanylate 95.7 0.0094 2E-07 47.7 3.0 22 85-106 3-24 (180)
469 PF13191 AAA_16: AAA ATPase do 95.7 0.0084 1.8E-07 47.8 2.7 22 84-105 25-46 (185)
470 cd00820 PEPCK_HprK Phosphoenol 95.6 0.01 2.2E-07 43.5 2.7 21 84-104 16-36 (107)
471 COG1120 FepC ABC-type cobalami 95.6 0.0096 2.1E-07 50.5 3.0 21 85-105 30-50 (258)
472 cd02037 MRP-like MRP (Multiple 95.6 0.08 1.7E-06 41.9 8.1 93 130-227 66-162 (169)
473 PRK14530 adenylate kinase; Pro 95.6 0.011 2.3E-07 49.0 3.1 22 84-105 4-25 (215)
474 PF13401 AAA_22: AAA domain; P 95.6 0.01 2.2E-07 44.6 2.7 22 85-106 6-27 (131)
475 cd03238 ABC_UvrA The excision 95.6 0.012 2.5E-07 47.3 3.1 21 84-104 22-42 (176)
476 COG3638 ABC-type phosphate/pho 95.5 0.011 2.4E-07 49.2 2.9 21 85-105 32-52 (258)
477 COG1161 Predicted GTPases [Gen 95.5 0.028 6.1E-07 49.6 5.7 92 140-242 18-110 (322)
478 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.5 0.013 2.7E-07 48.5 3.2 22 85-106 32-53 (218)
479 PF05729 NACHT: NACHT domain 95.5 0.011 2.5E-07 46.0 2.8 21 86-106 3-23 (166)
480 PRK13949 shikimate kinase; Pro 95.5 0.012 2.6E-07 46.9 2.9 21 85-105 3-23 (169)
481 PRK08233 hypothetical protein; 95.5 0.014 3.1E-07 46.6 3.4 23 84-106 4-26 (182)
482 COG3840 ThiQ ABC-type thiamine 95.5 0.013 2.8E-07 47.1 3.0 22 84-105 26-47 (231)
483 PRK14532 adenylate kinase; Pro 95.5 0.012 2.7E-07 47.4 3.0 22 85-106 2-23 (188)
484 TIGR01360 aden_kin_iso1 adenyl 95.5 0.012 2.6E-07 47.2 2.9 21 85-105 5-25 (188)
485 PRK05416 glmZ(sRNA)-inactivati 95.4 0.11 2.4E-06 45.0 8.9 74 85-184 8-83 (288)
486 PRK14738 gmk guanylate kinase; 95.4 0.016 3.5E-07 47.7 3.6 24 83-106 13-36 (206)
487 TIGR00960 3a0501s02 Type II (G 95.4 0.014 3E-07 48.2 3.2 22 85-106 31-52 (216)
488 PF03215 Rad17: Rad17 cell cyc 95.4 0.13 2.7E-06 48.4 9.8 33 216-248 197-229 (519)
489 PRK10751 molybdopterin-guanine 95.4 0.014 3.1E-07 46.6 3.0 23 84-106 7-29 (173)
490 TIGR00235 udk uridine kinase. 95.4 0.016 3.5E-07 47.6 3.4 23 83-105 6-28 (207)
491 PRK02496 adk adenylate kinase; 95.4 0.016 3.4E-07 46.7 3.3 22 84-105 2-23 (184)
492 cd03226 ABC_cobalt_CbiO_domain 95.4 0.015 3.2E-07 47.7 3.2 22 85-106 28-49 (205)
493 cd03225 ABC_cobalt_CbiO_domain 95.4 0.015 3.3E-07 47.8 3.2 22 85-106 29-50 (211)
494 PF04665 Pox_A32: Poxvirus A32 95.3 0.015 3.2E-07 48.9 3.1 24 83-106 13-36 (241)
495 TIGR01166 cbiO cobalt transpor 95.3 0.014 3.1E-07 47.1 3.0 22 85-106 20-41 (190)
496 TIGR03608 L_ocin_972_ABC putat 95.3 0.016 3.5E-07 47.4 3.3 22 85-106 26-47 (206)
497 cd03264 ABC_drug_resistance_li 95.3 0.014 3.1E-07 48.0 2.9 22 85-106 27-48 (211)
498 cd03269 ABC_putative_ATPase Th 95.3 0.016 3.5E-07 47.6 3.3 22 85-106 28-49 (210)
499 cd03265 ABC_DrrA DrrA is the A 95.3 0.016 3.5E-07 48.0 3.3 22 85-106 28-49 (220)
500 COG0410 LivF ABC-type branched 95.3 0.015 3.3E-07 48.2 3.0 23 85-107 31-53 (237)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-45 Score=289.11 Aligned_cols=169 Identities=21% Similarity=0.372 Sum_probs=158.6
Q ss_pred CCceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 041042 79 DNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIA 158 (268)
Q Consensus 79 ~~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~ 158 (268)
...+.+||+|+|++|||||+|+.||.++.|.+.+..|+|+||..+++.++|+.+++|||||+|||+|+++..+||++||+
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG 84 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 84 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhCCCC-ceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCe-EEEEcCCCCcC
Q 041042 159 ILFMFDLTSRCTLKSVIRWYQQARKCNQTA-IPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNAT-LFFSSATYNIN 236 (268)
Q Consensus 159 vilv~D~~~~~s~~~~~~~~~~i~~~~~~~-~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~ 236 (268)
||+|||+|+.+||+++..|+++++++.... +++|||||+|+. +.+.+..++++.|+.+++++ |+|+|||++.|
T Consensus 85 ii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~-----~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~N 159 (205)
T KOG0084|consen 85 IIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLT-----EKRVVSTEEAQEFADELGIPIFLETSAKDSTN 159 (205)
T ss_pred EEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccH-----hheecCHHHHHHHHHhcCCcceeecccCCccC
Confidence 999999999999999999999999997766 558999999972 44556699999999999999 99999999999
Q ss_pred HHHHHHHHHHHHhcCc
Q 041042 237 VNKILKFITAKLFDIP 252 (268)
Q Consensus 237 i~~~f~~l~~~i~~~~ 252 (268)
|+++|..|...+....
T Consensus 160 Ve~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 160 VEDAFLTLAKELKQRK 175 (205)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999888765
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.7e-44 Score=278.10 Aligned_cols=169 Identities=25% Similarity=0.418 Sum_probs=158.6
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
...+||+++|+.+||||||+.||+.+.|.+...+|+|..|.++++.+++..++|+||||+|||+|.++.++|||+|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhCCCCceE-EEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 161 FMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 161 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~i-lvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
+|||+++.+||..++.|+.++.+..+...+| |||||+||. +.+.+..++++.+|++.|..|||+|||||.||++
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~-----~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~ 157 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLL-----ERREVEFEEAQAYAESQGLLFFETSAKTGENVNE 157 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhh-----hcccccHHHHHHHHHhcCCEEEEEecccccCHHH
Confidence 9999999999999999999999988766666 999999982 3466779999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccc
Q 041042 240 ILKFITAKLFDIPWT 254 (268)
Q Consensus 240 ~f~~l~~~i~~~~~~ 254 (268)
+|..|.+.+......
T Consensus 158 if~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 158 IFQAIAEKLPCSDPQ 172 (200)
T ss_pred HHHHHHHhccCcccc
Confidence 999999999988744
No 3
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-43 Score=279.06 Aligned_cols=169 Identities=20% Similarity=0.381 Sum_probs=159.5
Q ss_pred CCceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 041042 79 DNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIA 158 (268)
Q Consensus 79 ~~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~ 158 (268)
+....+||+++|++|||||+|+.+|..+.|...+..|+|+||..+++.+++..+.+++|||+||++|+.+...||++|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 47778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCH
Q 041042 159 ILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINV 237 (268)
Q Consensus 159 vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 237 (268)
+++|||+++..||+++..|+..++++.+..++ +|||||+|+. ..+.+..+.++++|.++|+.|+|||||+|.||
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~-----~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI 162 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLE-----EKRQVSKERGEALAREYGIKFFETSAKTNFNI 162 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccc-----ccccccHHHHHHHHHHhCCeEEEccccCCCCH
Confidence 99999999999999999999999999876666 7999999973 34566699999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCc
Q 041042 238 NKILKFITAKLFDIP 252 (268)
Q Consensus 238 ~~~f~~l~~~i~~~~ 252 (268)
++.|..|++.+++..
T Consensus 163 ~eaF~~La~~i~~k~ 177 (207)
T KOG0078|consen 163 EEAFLSLARDILQKL 177 (207)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999999654
No 4
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.1e-42 Score=262.08 Aligned_cols=173 Identities=21% Similarity=0.373 Sum_probs=159.9
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||++||++|||||||+.+|+.+.|.+....|+|+||..+.+.++|..+++-||||+|||+|+.+.+.||++|.++
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI 87 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence 55679999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCC--CceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQT--AIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINV 237 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~--~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 237 (268)
|+|||++.+++|.++..|++++..++.+ .+.++||||+|. +..+.+..+++.+||+++++-|+||||++.+||
T Consensus 88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDk-----es~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V 162 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDK-----ESERVVDREEGLKFARKHRCLFIECSAKTRENV 162 (209)
T ss_pred EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccc-----hhcccccHHHHHHHHHhhCcEEEEcchhhhccH
Confidence 9999999999999999999999999643 334699999995 224556699999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCccchhc
Q 041042 238 NKILKFITAKLFDIPWTLER 257 (268)
Q Consensus 238 ~~~f~~l~~~i~~~~~~~~~ 257 (268)
+..|++++.+|++.+.-.++
T Consensus 163 ~~~FeelveKIi~tp~l~~~ 182 (209)
T KOG0080|consen 163 QCCFEELVEKIIETPSLWEE 182 (209)
T ss_pred HHHHHHHHHHHhcCcchhhc
Confidence 99999999999999866654
No 5
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-42 Score=269.04 Aligned_cols=168 Identities=23% Similarity=0.436 Sum_probs=156.1
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
..+.+|++++|+.+|||||||+||+.+.|...|.+|||+||.++++.+.+.++.||+|||+|||+|+.+.+.|++++.++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 45569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCC-Cce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQT-AIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINV 237 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 237 (268)
|+|||++|..||++..+|++.++..+.. .+. +|||||.||. +.+.+..+++...|+++++.|+++||+.|.||
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~-----dkrqvs~eEg~~kAkel~a~f~etsak~g~NV 173 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLS-----DKRQVSIEEGERKAKELNAEFIETSAKAGENV 173 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEccccccc-----chhhhhHHHHHHHHHHhCcEEEEecccCCCCH
Confidence 9999999999999999999999888654 355 4999999973 34666789999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCc
Q 041042 238 NKILKFITAKLFDIP 252 (268)
Q Consensus 238 ~~~f~~l~~~i~~~~ 252 (268)
.++|..|...+....
T Consensus 174 k~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 174 KQLFRRIAAALPGME 188 (221)
T ss_pred HHHHHHHHHhccCcc
Confidence 999999999888875
No 6
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-42 Score=269.30 Aligned_cols=168 Identities=17% Similarity=0.319 Sum_probs=156.7
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
..+.+|++++|+.|||||+|+.||+++.|.+.+..|+|++|..+.+.+++++++|++|||+|||.|+++...||++|.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC-CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCN-QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
|||||+++++||..+..|+.+++++. ++..++|+|||+||. ..+.+..++++.||+++|..|+|+||++++||+
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~-----~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VE 157 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLE-----ARREVSKEEGEAFAREHGLIFMETSAKTAENVE 157 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhh-----ccccccHHHHHHHHHHcCceeehhhhhhhhhHH
Confidence 99999999999999999999999995 566667999999982 445666999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCc
Q 041042 239 KILKFITAKLFDIP 252 (268)
Q Consensus 239 ~~f~~l~~~i~~~~ 252 (268)
|+|......+..+-
T Consensus 158 EaF~nta~~Iy~~~ 171 (216)
T KOG0098|consen 158 EAFINTAKEIYRKI 171 (216)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887664
No 7
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.1e-42 Score=257.15 Aligned_cols=168 Identities=23% Similarity=0.410 Sum_probs=158.1
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
..+.+|.+|+|++|||||||+.+|..+.|...|..|+|+|+..+++.++|..++|+||||+|+|+|+.+...||++.+++
T Consensus 5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv 84 (198)
T KOG0079|consen 5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV 84 (198)
T ss_pred HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
++|||+++.+||.++.+|+++++..++..+-|+||||.|++ +++.+..++++.||...|+.+||+|||.+.|++.
T Consensus 85 ~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~-----~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~ 159 (198)
T KOG0079|consen 85 IVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDP-----ERRVVDTEDARAFALQMGIELFETSAKENENVEA 159 (198)
T ss_pred EEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCc-----cceeeehHHHHHHHHhcCchheehhhhhcccchH
Confidence 99999999999999999999999999877779999999962 4455669999999999999999999999999999
Q ss_pred HHHHHHHHHhcCc
Q 041042 240 ILKFITAKLFDIP 252 (268)
Q Consensus 240 ~f~~l~~~i~~~~ 252 (268)
+|..|.+++++..
T Consensus 160 mF~cit~qvl~~k 172 (198)
T KOG0079|consen 160 MFHCITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988776
No 8
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=4.1e-41 Score=260.92 Aligned_cols=171 Identities=20% Similarity=0.339 Sum_probs=156.5
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+++|++|||||||+++|++++|...+..|||.+|..+.+.+++..++++||||+|||+|.++.-.|||+||++
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 44569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC----CCCce-EEEEeCCCCCCCCCc-cchhchHHHHHHHHHHh-CCeEEEEcCC
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCN----QTAIP-IIIGTKFDDFIQLPI-DLQWTIASQARAYAKAL-NATLFFSSAT 232 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~----~~~~~-ilvgnK~Dl~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 232 (268)
++|||+++++||+.+..|.+++..+. |..-| ||+|||+|+ ++ ..+.+..+.+++||+.. +++|||+|||
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~----~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK 161 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDV----DGGKSRQVSEKKAQTWCKSKGNIPYFETSAK 161 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccC----CCCccceeeHHHHHHHHHhcCCceeEEeccc
Confidence 99999999999999999999987763 34445 799999995 44 33666699999999988 5899999999
Q ss_pred CCcCHHHHHHHHHHHHhcCccc
Q 041042 233 YNINVNKILKFITAKLFDIPWT 254 (268)
Q Consensus 233 ~~~~i~~~f~~l~~~i~~~~~~ 254 (268)
.+.||+++|..+++.+++.+..
T Consensus 162 ~~~NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 162 EATNVDEAFEEIARRALANEDR 183 (210)
T ss_pred ccccHHHHHHHHHHHHHhccch
Confidence 9999999999999999998853
No 9
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.9e-40 Score=259.54 Aligned_cols=171 Identities=22% Similarity=0.416 Sum_probs=158.9
Q ss_pred CCCCceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCC
Q 041042 77 DADNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDS 156 (268)
Q Consensus 77 ~~~~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a 156 (268)
..+..+.+||+++|+++||||-|+.||..++|..+..+|+|++|.+..+.++++.++.+||||+|||+|+.+...||++|
T Consensus 8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA 87 (222)
T KOG0087|consen 8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA 87 (222)
T ss_pred ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCc
Q 041042 157 IAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNI 235 (268)
Q Consensus 157 ~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 235 (268)
.++++|||++...+|+++.+|+.+++.+....++ +|||||+||. ..+.+..++++.+++..+..++|+||..+.
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~-----~lraV~te~~k~~Ae~~~l~f~EtSAl~~t 162 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLN-----HLRAVPTEDGKAFAEKEGLFFLETSALDAT 162 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhh-----hccccchhhhHhHHHhcCceEEEecccccc
Confidence 9999999999999999999999999999866666 5999999982 345666999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCc
Q 041042 236 NVNKILKFITAKLFDIP 252 (268)
Q Consensus 236 ~i~~~f~~l~~~i~~~~ 252 (268)
||+++|..++..|+..-
T Consensus 163 NVe~aF~~~l~~I~~~v 179 (222)
T KOG0087|consen 163 NVEKAFERVLTEIYKIV 179 (222)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 99999999988877653
No 10
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=7.9e-39 Score=259.53 Aligned_cols=182 Identities=51% Similarity=0.853 Sum_probs=162.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|+.|||||||+++|+++.|...+.+|+|.++..+.+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 59999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHH
Q 041042 164 DLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKF 243 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~ 243 (268)
|+++++||+++..|++.+.+..+..+||+||||+||........++...++++++++..++++++|||++|.|++++|++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~ 160 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKI 160 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999988766667789999999843323233334467888999999999999999999999999999
Q ss_pred HHHHHhcCccchhcccCCCCCC
Q 041042 244 ITAKLFDIPWTLERNLTIGEPI 265 (268)
Q Consensus 244 l~~~i~~~~~~~~~~~~~~~~i 265 (268)
+++.+++.+.....-...++||
T Consensus 161 l~~~l~~~~~~~~~~~~~~~~~ 182 (182)
T cd04128 161 VLAKAFDLPLTIPEILTVGEPI 182 (182)
T ss_pred HHHHHHhcCCChhhhcCCCCCC
Confidence 9999999887777777777765
No 11
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-39 Score=240.50 Aligned_cols=171 Identities=24% Similarity=0.393 Sum_probs=156.8
Q ss_pred CCCCceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCC
Q 041042 77 DADNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDS 156 (268)
Q Consensus 77 ~~~~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a 156 (268)
+....+.+|++++|+..||||||+.++.++.|...+..|+|++|..+++.-..+.+++++|||+|+|+|+.+...||++|
T Consensus 15 dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga 94 (193)
T KOG0093|consen 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA 94 (193)
T ss_pred cccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence 34466678999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCc
Q 041042 157 IAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNI 235 (268)
Q Consensus 157 ~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 235 (268)
+++|++||++|.+||..++.|...|+.++-...+ |+||||||| ++++.+..+.++.++.++|+.|||+|||.|.
T Consensus 95 mgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDm-----d~eRvis~e~g~~l~~~LGfefFEtSaK~Ni 169 (193)
T KOG0093|consen 95 MGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDM-----DSERVISHERGRQLADQLGFEFFETSAKENI 169 (193)
T ss_pred ceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCC-----ccceeeeHHHHHHHHHHhChHHhhhcccccc
Confidence 9999999999999999999999999998765544 799999997 2334445999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCc
Q 041042 236 NVNKILKFITAKLFDIP 252 (268)
Q Consensus 236 ~i~~~f~~l~~~i~~~~ 252 (268)
||+++|+.++..|.++.
T Consensus 170 nVk~~Fe~lv~~Ic~km 186 (193)
T KOG0093|consen 170 NVKQVFERLVDIICDKM 186 (193)
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 99999999999988765
No 12
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=3.1e-38 Score=257.15 Aligned_cols=167 Identities=20% Similarity=0.354 Sum_probs=152.5
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
...+||+++|+.|||||||+++|.++.|...+.+|++.++....+.+++..+.+++|||+|+++|..++..|++++|++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 34699999999999999999999999998888899999998888899999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 161 FMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 161 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
+|||+++++||+++..|++++....++.|+||||||+||. ..+.+..++++.+++.++++|+||||++|.||+++
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~-----~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~ 158 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA-----FKRQVATEQAQAYAERNGMTFFEVSPLCNFNITES 158 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch-----hccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence 9999999999999999999998887776778999999973 22345588999999999999999999999999999
Q ss_pred HHHHHHHHhcCc
Q 041042 241 LKFITAKLFDIP 252 (268)
Q Consensus 241 f~~l~~~i~~~~ 252 (268)
|++|++.+....
T Consensus 159 F~~l~~~i~~~~ 170 (189)
T cd04121 159 FTELARIVLMRH 170 (189)
T ss_pred HHHHHHHHHHhc
Confidence 999999887654
No 13
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-39 Score=241.85 Aligned_cols=167 Identities=20% Similarity=0.382 Sum_probs=153.7
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+++|..|||||+|+++|..+-|.+....|+|++|+.+++.++|.+++++||||+|||+|+++.+.||+.|+++
T Consensus 4 ykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahal 83 (213)
T KOG0095|consen 4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (213)
T ss_pred cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence 55679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
|+|||++...||+.+.+|+.+|.++..+.+. |+||||.|+ .+++++..+.+++|++....-|+|+||+..+||+
T Consensus 84 ilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~-----~drrevp~qigeefs~~qdmyfletsakea~nve 158 (213)
T KOG0095|consen 84 ILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDL-----ADRREVPQQIGEEFSEAQDMYFLETSAKEADNVE 158 (213)
T ss_pred EEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccch-----hhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHH
Confidence 9999999999999999999999999766665 899999997 2445566888999999988888999999999999
Q ss_pred HHHHHHHHHHhcC
Q 041042 239 KILKFITAKLFDI 251 (268)
Q Consensus 239 ~~f~~l~~~i~~~ 251 (268)
.+|..++..+...
T Consensus 159 ~lf~~~a~rli~~ 171 (213)
T KOG0095|consen 159 KLFLDLACRLISE 171 (213)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988766544
No 14
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=5.4e-39 Score=244.23 Aligned_cols=167 Identities=19% Similarity=0.405 Sum_probs=152.9
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLV-RGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
.+.+++++||++-||||||++.|..++|.+-..||+|+||..+.+.+ +|..++|++|||+|||+|+++.+.||++.-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 46799999999999999999999999999999999999999887766 68899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC--CCCceE-EEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcC
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCN--QTAIPI-IIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNIN 236 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~i-lvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 236 (268)
++|||++|++||+.+..|+.+...+- |..+++ |||+|+||. ..+.+..++++.|++.+|+.|+|+||++|.|
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~-----SqRqVt~EEaEklAa~hgM~FVETSak~g~N 160 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQ-----SQRQVTAEEAEKLAASHGMAFVETSAKNGCN 160 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchh-----hhccccHHHHHHHHHhcCceEEEecccCCCc
Confidence 99999999999999999999987773 555664 999999982 4466779999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCc
Q 041042 237 VNKILKFITAKLFDIP 252 (268)
Q Consensus 237 i~~~f~~l~~~i~~~~ 252 (268)
|++.|..|++.++..-
T Consensus 161 VeEAF~mlaqeIf~~i 176 (213)
T KOG0091|consen 161 VEEAFDMLAQEIFQAI 176 (213)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887654
No 15
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=9.3e-38 Score=251.63 Aligned_cols=167 Identities=19% Similarity=0.297 Sum_probs=146.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|++|||||||+.+|+.+.|...+.+|++.++ .+.+.+++..+++++|||+|+++|..++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 7999999999999999999999999999999998776 466788999999999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHHhCCCCceEEEEeCCCCCCCCC-----ccchhchHHHHHHHHHHhCC-eEEEEcCCCCcC
Q 041042 164 DLTSRCTLKSV-IRWYQQARKCNQTAIPIIIGTKFDDFIQLP-----IDLQWTIASQARAYAKALNA-TLFFSSATYNIN 236 (268)
Q Consensus 164 D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 236 (268)
|+++++||+++ ..|+..+....++.|+||||||+||..+.. ...+.+..++++++++.+++ .|+||||++|.|
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n 160 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQN 160 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccC
Confidence 99999999998 689999988776666689999999732110 01123568899999999998 599999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 041042 237 VNKILKFITAKLFDI 251 (268)
Q Consensus 237 i~~~f~~l~~~i~~~ 251 (268)
|+++|+.+++.+.+.
T Consensus 161 V~~~F~~~~~~~~~~ 175 (176)
T cd04133 161 VKAVFDAAIKVVLQP 175 (176)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999987543
No 16
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=7.8e-38 Score=257.15 Aligned_cols=163 Identities=21% Similarity=0.412 Sum_probs=147.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+.|+++|+.|||||||+++|..+.|...+.+|+|.++..+.+.+++..+.+++|||+|+++|..++..|++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhCCC-CceEEEEeCCCCCCCCCccchhchHHHHHHHHHHh-CCeEEEEcCCCCcCHHHHH
Q 041042 164 DLTSRCTLKSVIRWYQQARKCNQT-AIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKAL-NATLFFSSATYNINVNKIL 241 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~f 241 (268)
|+++++||+++..|++.+...... .|+||||||+||. ..+.+..++++++++++ ++.|++|||++|.||+++|
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~-----~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F 155 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE-----TDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 155 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc-----cccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHH
Confidence 999999999999999998877544 4447999999972 23445578888999886 8999999999999999999
Q ss_pred HHHHHHHhcC
Q 041042 242 KFITAKLFDI 251 (268)
Q Consensus 242 ~~l~~~i~~~ 251 (268)
+++++.+.+.
T Consensus 156 ~~l~~~~~~~ 165 (202)
T cd04120 156 LKLVDDILKK 165 (202)
T ss_pred HHHHHHHHHh
Confidence 9999988654
No 17
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.2e-37 Score=252.47 Aligned_cols=169 Identities=26% Similarity=0.318 Sum_probs=148.8
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
...+||+++|++|||||||+++|..+.|...+.||++.++. +.+.+++..+.+++|||+|+++|..++..+++++|++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 45689999999999999999999999999999999987664 67888999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHHhCCCCceEEEEeCCCCCCCCC------c-cchhchHHHHHHHHHHhCC-eEEEEcC
Q 041042 161 FMFDLTSRCTLKSV-IRWYQQARKCNQTAIPIIIGTKFDDFIQLP------I-DLQWTIASQARAYAKALNA-TLFFSSA 231 (268)
Q Consensus 161 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~------~-~~~~~~~~~~~~~~~~~~~-~~~~~Sa 231 (268)
+|||+++++||+++ ..|++.+....++.|+||||||+||..... . ..+.+..++++++|+++++ +|+||||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 161 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 161 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 99999999999998 799999998887777789999999732110 0 1123568999999999996 8999999
Q ss_pred CCCcC-HHHHHHHHHHHHhc
Q 041042 232 TYNIN-VNKILKFITAKLFD 250 (268)
Q Consensus 232 ~~~~~-i~~~f~~l~~~i~~ 250 (268)
++|.| |+++|+.+++.+++
T Consensus 162 k~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 162 LQSENSVRDIFHVATLACVN 181 (182)
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99998 99999999987654
No 18
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-38 Score=239.79 Aligned_cols=168 Identities=18% Similarity=0.299 Sum_probs=157.3
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
..+.+|++++|+.|.|||+|+++|+.++|.++...|+|++|.++.+.+.++.++++||||+|||+|++..+.||++|.+.
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGA 85 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 85 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
++|||+++++||+.+..|+..++...+..+. |++|||.|| +..+.+...++..||++..+.+.|+||++|+||+
T Consensus 86 lLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL-----~~~R~VtflEAs~FaqEnel~flETSa~TGeNVE 160 (214)
T KOG0086|consen 86 LLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDL-----DPEREVTFLEASRFAQENELMFLETSALTGENVE 160 (214)
T ss_pred EEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhc-----ChhhhhhHHHHHhhhcccceeeeeecccccccHH
Confidence 9999999999999999999999998776666 599999997 2446667999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCc
Q 041042 239 KILKFITAKLFDIP 252 (268)
Q Consensus 239 ~~f~~l~~~i~~~~ 252 (268)
|.|-..++.|+.+-
T Consensus 161 EaFl~c~~tIl~kI 174 (214)
T KOG0086|consen 161 EAFLKCARTILNKI 174 (214)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998888764
No 19
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=8.2e-37 Score=255.41 Aligned_cols=171 Identities=23% Similarity=0.278 Sum_probs=150.5
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+++|++|||||||+++|..+.|...+.||++.++. ..+.+++..+.++||||+|+++|..+...||++||++
T Consensus 10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~v 88 (232)
T cd04174 10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 88 (232)
T ss_pred ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEE
Confidence 556799999999999999999999999999999999998774 5688899999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHhCCCCceEEEEeCCCCCCCCC------cc-chhchHHHHHHHHHHhCC-eEEEEc
Q 041042 160 LFMFDLTSRCTLKSV-IRWYQQARKCNQTAIPIIIGTKFDDFIQLP------ID-LQWTIASQARAYAKALNA-TLFFSS 230 (268)
Q Consensus 160 ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~------~~-~~~~~~~~~~~~~~~~~~-~~~~~S 230 (268)
|+|||+++.+||+.+ ..|++++....+..|+||||||+||..... .. .+.+..++++++|+++++ .|+|||
T Consensus 89 IlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS 168 (232)
T cd04174 89 LLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS 168 (232)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence 999999999999985 799999998877766789999999742110 01 234558899999999999 699999
Q ss_pred CCCCc-CHHHHHHHHHHHHhcC
Q 041042 231 ATYNI-NVNKILKFITAKLFDI 251 (268)
Q Consensus 231 a~~~~-~i~~~f~~l~~~i~~~ 251 (268)
|++|. ||+++|..++..+.+.
T Consensus 169 Aktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 169 AFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CCcCCcCHHHHHHHHHHHHHHh
Confidence 99998 8999999999988765
No 20
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=6.3e-37 Score=247.46 Aligned_cols=166 Identities=26% Similarity=0.322 Sum_probs=146.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
++||+++|++|||||||+++|.++.|...+.||++.++. +.+.+++..+.+++|||+|+++|..+...+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 479999999999999999999999999999999987764 6788899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHHhCCCCceEEEEeCCCCCCCCC------cc-chhchHHHHHHHHHHhCC-eEEEEcCCC
Q 041042 163 FDLTSRCTLKSV-IRWYQQARKCNQTAIPIIIGTKFDDFIQLP------ID-LQWTIASQARAYAKALNA-TLFFSSATY 233 (268)
Q Consensus 163 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~------~~-~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 233 (268)
||+++++||+++ ..|+..+.+..++.|+||||||+||..... .. .+.+..+++.++++++++ +|+||||++
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 999999999996 799999998887777789999999732100 01 123558899999999997 899999999
Q ss_pred CcC-HHHHHHHHHHHHh
Q 041042 234 NIN-VNKILKFITAKLF 249 (268)
Q Consensus 234 ~~~-i~~~f~~l~~~i~ 249 (268)
|+| |+++|..+++.++
T Consensus 160 ~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 160 SEKSVRDIFHVATMACL 176 (178)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 995 9999999998655
No 21
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=4e-36 Score=245.55 Aligned_cols=168 Identities=18% Similarity=0.236 Sum_probs=145.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
.+||+++|+.|||||||+++|..+.|...+.||++.++. +.+.+++..+.+++|||+|+++|..+++.|++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 589999999999999999999999999999999987654 5667899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCCc-------cchhchHHHHHHHHHHhC-CeEEEEcCCC
Q 041042 163 FDLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLPI-------DLQWTIASQARAYAKALN-ATLFFSSATY 233 (268)
Q Consensus 163 ~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 233 (268)
||+++++||+++. .|+..+....++.|+||||||+||.+.... ....+..++++++++.++ ++|+||||++
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~ 161 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALN 161 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 9999999999997 699888877666666799999997422110 001244678999999998 5999999999
Q ss_pred CcCHHHHHHHHHHHHhcC
Q 041042 234 NINVNKILKFITAKLFDI 251 (268)
Q Consensus 234 ~~~i~~~f~~l~~~i~~~ 251 (268)
|.||+++|+++++.+...
T Consensus 162 g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 162 QDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred CCCHHHHHHHHHHHHhcc
Confidence 999999999999988764
No 22
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.6e-37 Score=235.11 Aligned_cols=170 Identities=25% Similarity=0.403 Sum_probs=157.6
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....||++++|..-||||||+-||+.++|...+.+|+.-.|..+.+.+.+....+.||||+|||+|..+-+.||++.+++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
++|||++|++||+.++.|..+++....+.+- +|||||+|| ++++.+..+++..+++.-|+.|+++||+.+.||.
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDL-----EeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~ 164 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDL-----EEERQVTRQEAEAYAESVGALYMETSAKDNVGIS 164 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccH-----HHhhhhhHHHHHHHHHhhchhheecccccccCHH
Confidence 9999999999999999999999998777666 599999997 2456667999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccc
Q 041042 239 KILKFITAKLFDIPWT 254 (268)
Q Consensus 239 ~~f~~l~~~i~~~~~~ 254 (268)
++|+.+...+++....
T Consensus 165 elFe~Lt~~MiE~~s~ 180 (218)
T KOG0088|consen 165 ELFESLTAKMIEHSSQ 180 (218)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999988887533
No 23
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.9e-35 Score=235.97 Aligned_cols=163 Identities=20% Similarity=0.347 Sum_probs=146.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
.+||+++|++|||||||+++|.++.|...+.+|++.++..+.+.+++..+.+++|||+|+++|..++..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999988999999999888888999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhCC-CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHH
Q 041042 163 FDLTSRCTLKSVIRWYQQARKCNQ-TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKIL 241 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f 241 (268)
||+++++||+.+..|++.+..... +.|++|||||+|+. ..+....+++.++++..++++++|||++|.|++++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f 156 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE-----AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAF 156 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-----cccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 999999999999999999877654 44557999999972 223345778899999999999999999999999999
Q ss_pred HHHHHHHhc
Q 041042 242 KFITAKLFD 250 (268)
Q Consensus 242 ~~l~~~i~~ 250 (268)
.++++.+.+
T Consensus 157 ~~l~~~~~~ 165 (166)
T cd04122 157 LETAKKIYQ 165 (166)
T ss_pred HHHHHHHhh
Confidence 999988765
No 24
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=2.5e-35 Score=237.61 Aligned_cols=164 Identities=16% Similarity=0.241 Sum_probs=142.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|++|||||||+++|..+.|...+.||++.++. +.+.+++..+.+++|||+|+++|..++..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999998899999987764 56778899999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCC------CCc-cchhchHHHHHHHHHHhC-CeEEEEcCCCC
Q 041042 164 DLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQ------LPI-DLQWTIASQARAYAKALN-ATLFFSSATYN 234 (268)
Q Consensus 164 D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~------~~~-~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 234 (268)
|+++++||+++. .|+..+....++.|.||||||+|+... +.. ..+.+..+++++++++.+ +.|+||||++|
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 999999999997 699999887766666899999997321 000 113445788999999987 68999999999
Q ss_pred cCHHHHHHHHHHHH
Q 041042 235 INVNKILKFITAKL 248 (268)
Q Consensus 235 ~~i~~~f~~l~~~i 248 (268)
.|++++|+.+++.+
T Consensus 161 ~~v~~~f~~~~~~~ 174 (175)
T cd01874 161 KGLKNVFDEAILAA 174 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998864
No 25
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-37 Score=234.64 Aligned_cols=170 Identities=25% Similarity=0.375 Sum_probs=151.8
Q ss_pred CCCceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEEC---------CeEEEEEEEeCCCccccccc
Q 041042 78 ADNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVR---------GARISYSIWEVTGDAKAQDH 148 (268)
Q Consensus 78 ~~~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~---------~~~~~l~i~Dt~G~~~~~~~ 148 (268)
.+..+.+|++.+|++||||||++.++.+++|..+...|+|.||..+.+.++ +..+.+++|||+|||+|+++
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 346677899999999999999999999999999999999999999888763 46799999999999999999
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh--CCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeE
Q 041042 149 LPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKC--NQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATL 226 (268)
Q Consensus 149 ~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (268)
...|+++|-+++++||+++..||-+++.|+.+++.+ +.+.-+|++|||+||. +.+.+..+++.++|.++|+||
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~-----~~R~Vs~~qa~~La~kyglPY 158 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLE-----DQRVVSEDQAAALADKYGLPY 158 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchh-----hhhhhhHHHHHHHHHHhCCCe
Confidence 999999999999999999999999999999999876 4444446999999982 344555899999999999999
Q ss_pred EEEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 227 FFSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 227 ~~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
||+||-+|.||++..+.++..+++.-
T Consensus 159 fETSA~tg~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 159 FETSACTGTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred eeeccccCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999888877653
No 26
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=3.4e-35 Score=244.39 Aligned_cols=169 Identities=24% Similarity=0.338 Sum_probs=147.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
++||+|+|++|||||||+++|..+.|...+.||++.++. ..+.+++..+.|++|||+|++.|..++..+|+++|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 379999999999999999999999999999999987765 6778899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCCc------cc-hhchHHHHHHHHHHhCC-eEEEEcCCC
Q 041042 163 FDLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLPI------DL-QWTIASQARAYAKALNA-TLFFSSATY 233 (268)
Q Consensus 163 ~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~------~~-~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 233 (268)
||+++++||+++. .|..++....++.|+||||||+||...... .. ..+..+++..++++.++ +|+||||++
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 9999999999994 788888877777777899999998432110 01 12457899999999996 899999999
Q ss_pred CcC-HHHHHHHHHHHHhcCc
Q 041042 234 NIN-VNKILKFITAKLFDIP 252 (268)
Q Consensus 234 ~~~-i~~~f~~l~~~i~~~~ 252 (268)
+.| |+++|+.++..++...
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 160 SERSVRDVFHVATVASLGRG 179 (222)
T ss_pred CCcCHHHHHHHHHHHHHhcc
Confidence 985 9999999999887754
No 27
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=3.9e-35 Score=244.54 Aligned_cols=165 Identities=23% Similarity=0.341 Sum_probs=147.7
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
...+||+++|++|||||||++++..+.|...+.+|+|.++....+..++..+.+.+|||+|+++|..++..|++++|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 55799999999999999999999999999999999999998888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 161 FMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 161 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
+|||+++++||+.+..|+..+.+..++.|++|||||+|+. .+.+..+++ .+++..+++|++|||++|.||+++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~------~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~ 163 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK------NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 163 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh------hccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHH
Confidence 9999999999999999999998887666678999999972 122233444 788888999999999999999999
Q ss_pred HHHHHHHHhcCc
Q 041042 241 LKFITAKLFDIP 252 (268)
Q Consensus 241 f~~l~~~i~~~~ 252 (268)
|++|++.+.+..
T Consensus 164 f~~l~~~~~~~~ 175 (219)
T PLN03071 164 FLYLARKLAGDP 175 (219)
T ss_pred HHHHHHHHHcCc
Confidence 999999987653
No 28
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.9e-35 Score=240.99 Aligned_cols=168 Identities=20% Similarity=0.338 Sum_probs=148.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVR-GARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
+||+++|++|||||||+++|+++.|...+.+|+|.++..+.+.++ +..+.+++|||+|+++|..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 599999999999999999999999988999999999988888888 8899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhC-----CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhC-CeEEEEcCCCCcC
Q 041042 163 FDLTSRCTLKSVIRWYQQARKCN-----QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALN-ATLFFSSATYNIN 236 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~~-----~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 236 (268)
||+++++||+.+..|+..+.... ...|.||||||+|+. ....+..+++.++++..+ +.|++|||++|.|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~ 155 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK-----KRLAKDGEQMDQFCKENGFIGWFETSAKEGIN 155 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc-----cccccCHHHHHHHHHHcCCceEEEEeCCCCCC
Confidence 99999999999999999887542 344557999999972 123455788999999999 6899999999999
Q ss_pred HHHHHHHHHHHHhcCccchh
Q 041042 237 VNKILKFITAKLFDIPWTLE 256 (268)
Q Consensus 237 i~~~f~~l~~~i~~~~~~~~ 256 (268)
|+++|++|++.+.+......
T Consensus 156 v~e~f~~l~~~l~~~~~~~~ 175 (201)
T cd04107 156 IEEAMRFLVKNILANDKNLQ 175 (201)
T ss_pred HHHHHHHHHHHHHHhchhhH
Confidence 99999999999887764333
No 29
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-36 Score=222.89 Aligned_cols=173 Identities=19% Similarity=0.305 Sum_probs=158.7
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
..+.+|.+++|+-|||||+|+++|...+|..+-..|+|+.|..+.+.+.|++++++||||+|||+|+...+.||++|.+.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 87 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 55679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHh-CCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKC-NQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
++|||++.+.++..+..|+...+.. +++..++++|||.|| +.++.+..+++.+|++++|..|+|+|||+|.||+
T Consensus 88 lmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadl-----e~qrdv~yeeak~faeengl~fle~saktg~nve 162 (215)
T KOG0097|consen 88 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADL-----ESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVE 162 (215)
T ss_pred eEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhh-----hhcccCcHHHHHHHHhhcCeEEEEecccccCcHH
Confidence 9999999999999999999998876 456666799999998 2445667999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccchhc
Q 041042 239 KILKFITAKLFDIPWTLER 257 (268)
Q Consensus 239 ~~f~~l~~~i~~~~~~~~~ 257 (268)
+.|-+..+++.++-+...-
T Consensus 163 dafle~akkiyqniqdgsl 181 (215)
T KOG0097|consen 163 DAFLETAKKIYQNIQDGSL 181 (215)
T ss_pred HHHHHHHHHHHHhhhcCcc
Confidence 9999999998887644433
No 30
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.4e-37 Score=229.09 Aligned_cols=162 Identities=19% Similarity=0.345 Sum_probs=148.3
Q ss_pred EEEcCCCChHHHHHHHHhcCCC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeC
Q 041042 87 SLLGDCHIGKTSFLEKYVGDEK-EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDL 165 (268)
Q Consensus 87 ~vlG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~ 165 (268)
+++|++++|||+|+-||.++-| .....+|+|.+|..+.+.++++++++++|||+|||+|++....||++||+.+++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 3789999999999999998876 456788999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhCCCCceE-EEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHH
Q 041042 166 TSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFI 244 (268)
Q Consensus 166 ~~~~s~~~~~~~~~~i~~~~~~~~~i-lvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l 244 (268)
+|..||++++.|+.+|.++....+-+ ++|||+|+. .++.+..++++.+++.+++||+|+|||+|.||+-.|-.|
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a-----~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~i 155 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLA-----HERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAI 155 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccc-----hhhccccchHHHHHHHHCCCceeccccccccHhHHHHHH
Confidence 99999999999999999998776664 999999972 224556899999999999999999999999999999999
Q ss_pred HHHHhcCcc
Q 041042 245 TAKLFDIPW 253 (268)
Q Consensus 245 ~~~i~~~~~ 253 (268)
++.+.+..-
T Consensus 156 a~~l~k~~~ 164 (192)
T KOG0083|consen 156 AEELKKLKM 164 (192)
T ss_pred HHHHHHhcc
Confidence 999887753
No 31
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=5e-35 Score=235.21 Aligned_cols=164 Identities=13% Similarity=0.198 Sum_probs=144.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
.+||+++|++|||||||+++|..+.|...+.+|++..+ .+.+.+++..+.+++|||+|+++|..++..+++++|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 48999999999999999999999999888999998655 45678899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 163 FDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
||+++++||+.+..|+..+.+.. ++.|.||||||+|+. ..+.+..+++..+++.++++|++|||++|.||+++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~-----~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~ 155 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE-----SQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDA 155 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh-----hcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHH
Confidence 99999999999999998887653 345557999999972 12334577889999999999999999999999999
Q ss_pred HHHHHHHHhcCc
Q 041042 241 LKFITAKLFDIP 252 (268)
Q Consensus 241 f~~l~~~i~~~~ 252 (268)
|++|++.+.+..
T Consensus 156 f~~l~~~~~~~~ 167 (172)
T cd04141 156 FHGLVREIRRKE 167 (172)
T ss_pred HHHHHHHHHHhc
Confidence 999999887643
No 32
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=6.5e-35 Score=231.96 Aligned_cols=159 Identities=22% Similarity=0.411 Sum_probs=144.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|++|||||||+++|.++.|.+.+.+|++.++..+.+.+++..+.+++||++|+++|..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999999889999999988888899999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHH
Q 041042 164 DLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILK 242 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~ 242 (268)
|+++++||+.+..|++.+....+...| ++||||.||. ..+.+..+++..+++..+++|++|||++|.||+++|.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE-----QKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-----cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999877654444 7999999972 2234457889999999999999999999999999999
Q ss_pred HHHHH
Q 041042 243 FITAK 247 (268)
Q Consensus 243 ~l~~~ 247 (268)
+|++.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99865
No 33
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1.3e-34 Score=231.34 Aligned_cols=164 Identities=18% Similarity=0.354 Sum_probs=147.6
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
+.+||+++|++|||||||+++|.++.|...+.+|++.++..+.+.+++..+.+++|||+|++++..++..+++++|++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 45899999999999999999999999999999999999888888899999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCCCC-ceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCNQTA-IPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~~~~-~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
|||+++.++|+.+..|+..+....... |.+|||||+|+. + .+....+++..+++.++++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 156 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME----E-KRVVSKEEGEALADEYGIKFLETSAKANINVEEA 156 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc----c-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999998875444 447999999973 1 2334467788899999999999999999999999
Q ss_pred HHHHHHHHhc
Q 041042 241 LKFITAKLFD 250 (268)
Q Consensus 241 f~~l~~~i~~ 250 (268)
|+++++.+..
T Consensus 157 ~~~i~~~~~~ 166 (167)
T cd01867 157 FFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 34
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.3e-34 Score=233.87 Aligned_cols=164 Identities=25% Similarity=0.401 Sum_probs=144.8
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEEC----------CeEEEEEEEeCCCccccccchhh
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVR----------GARISYSIWEVTGDAKAQDHLPV 151 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~----------~~~~~l~i~Dt~G~~~~~~~~~~ 151 (268)
+.+||+++|++|||||||+++|.++.|...+.+|++.++....+.+. +..+.+++|||+|+++|..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 46999999999999999999999999999999999999887777654 46789999999999999999999
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEE
Q 041042 152 ACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFS 229 (268)
Q Consensus 152 ~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (268)
+++++|++|+|||+++.+||.++..|+..+.... ++.|++|||||+|+. ..+.+..+++.++++..+++++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE-----DQRQVSEEQAKALADKYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch-----hcCccCHHHHHHHHHHcCCeEEEE
Confidence 9999999999999999999999999999998764 344457999999972 123344678899999999999999
Q ss_pred cCCCCcCHHHHHHHHHHHHhc
Q 041042 230 SATYNINVNKILKFITAKLFD 250 (268)
Q Consensus 230 Sa~~~~~i~~~f~~l~~~i~~ 250 (268)
||++|.|++++|++|++.+++
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999988764
No 35
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.8e-34 Score=231.56 Aligned_cols=165 Identities=21% Similarity=0.348 Sum_probs=145.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFD 164 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D 164 (268)
||+++|++|||||||+++|.++.|...+.+|++.++..+.+.+++..+.+++|||+|+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 89999999999999999999999999999999999988888899999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHh-CCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHH
Q 041042 165 LTSRCTLKSVIRWYQQARKC-NQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILK 242 (268)
Q Consensus 165 ~~~~~s~~~~~~~~~~i~~~-~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~ 242 (268)
+++.++|+.+..|++.+.+. .+..+| ++||||+|+. +........+++..++++++++|+++||++|.|++++|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~ 158 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS---SPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFF 158 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC---ccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999998665 344455 6999999972 111112346778888999999999999999999999999
Q ss_pred HHHHHHhcCc
Q 041042 243 FITAKLFDIP 252 (268)
Q Consensus 243 ~l~~~i~~~~ 252 (268)
.|++.+.+.+
T Consensus 159 ~l~~~~~~~~ 168 (170)
T cd04108 159 RVAALTFELG 168 (170)
T ss_pred HHHHHHHHcc
Confidence 9999887653
No 36
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=100.00 E-value=2.7e-35 Score=222.26 Aligned_cols=189 Identities=57% Similarity=0.960 Sum_probs=184.1
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
+...+||.++|++.+|||||+-.++++++.+.+..|.|+++..+++.+.|..+.+.+||.+|++++..+.+..+.++-++
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI 96 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI 96 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence 66789999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
+++||++.++++..+..|+.+.+..+...+||+||+|.|+.-.++.+.++.+..+++.+|+-.+++.|+||+..+.||..
T Consensus 97 lFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~K 176 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQK 176 (205)
T ss_pred EEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccchhcccCCCCCCCCC
Q 041042 240 ILKFITAKLFDIPWTLERNLTIGEPIIDF 268 (268)
Q Consensus 240 ~f~~l~~~i~~~~~~~~~~~~~~~~i~~~ 268 (268)
+|.-+..++++.+|++++....++||+||
T Consensus 177 IFK~vlAklFnL~~ti~~~~~iGdPildy 205 (205)
T KOG1673|consen 177 IFKIVLAKLFNLPWTIPEILTIGDPILDY 205 (205)
T ss_pred HHHHHHHHHhCCceecccccccCcccccC
Confidence 99999999999999999999999999998
No 37
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=1.4e-34 Score=229.75 Aligned_cols=160 Identities=25% Similarity=0.447 Sum_probs=148.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFD 164 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D 164 (268)
||+++|+++||||||+++|.++.|...+.+|+|.+...+.+.+++..+.+++||++|+++|..+...+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhCCC-CceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHH
Q 041042 165 LTSRCTLKSVIRWYQQARKCNQT-AIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKF 243 (268)
Q Consensus 165 ~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~ 243 (268)
+++++||+.+..|+..+....+. .|.+|||||.|+. +.+.+..+++++++++++++|++|||+++.||.++|..
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~-----~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 155 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLS-----DEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQE 155 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGG-----GGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeecccccc-----ccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999884 4447999999962 23455588999999999999999999999999999999
Q ss_pred HHHHHh
Q 041042 244 ITAKLF 249 (268)
Q Consensus 244 l~~~i~ 249 (268)
+++.+.
T Consensus 156 ~i~~i~ 161 (162)
T PF00071_consen 156 LIRKIL 161 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
No 38
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=2.8e-34 Score=229.08 Aligned_cols=162 Identities=24% Similarity=0.434 Sum_probs=144.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|++|||||||+++|.+++|...+.+|+|.++....+..++..+.+++|||+|+++|..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998889999998888778888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhCCCC-ceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHH
Q 041042 164 DLTSRCTLKSVIRWYQQARKCNQTA-IPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILK 242 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~~~~~-~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~ 242 (268)
|+++.++|+.+..|+..+....... |++|||||+|+. +.+....+++.++++.++++++++||++|.|++++|+
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 156 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME-----DERVVSSERGRQLADQLGFEFFEASAKENINVKQVFE 156 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC-----cccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 9999999999999999998876544 457999999972 1223346777888999999999999999999999999
Q ss_pred HHHHHHhc
Q 041042 243 FITAKLFD 250 (268)
Q Consensus 243 ~l~~~i~~ 250 (268)
++++.+.+
T Consensus 157 ~l~~~~~~ 164 (165)
T cd01865 157 RLVDIICD 164 (165)
T ss_pred HHHHHHHh
Confidence 99987754
No 39
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=3.2e-34 Score=229.19 Aligned_cols=162 Identities=23% Similarity=0.344 Sum_probs=144.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|++|||||||++++..+.+...+.+|++.++....+..++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 59999999999999999999999998889999998888777888888999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHH
Q 041042 164 DLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKF 243 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~ 243 (268)
|+++.+||+.+..|+..+.....+.|+++||||+|+. . +....+..++++..+++++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~------~-~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK------D-RKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc------c-ccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHH
Confidence 9999999999999999999887766668999999972 1 12223455678888899999999999999999999
Q ss_pred HHHHHhcCc
Q 041042 244 ITAKLFDIP 252 (268)
Q Consensus 244 l~~~i~~~~ 252 (268)
|++.+.+.+
T Consensus 154 l~~~~~~~~ 162 (166)
T cd00877 154 LARKLLGNP 162 (166)
T ss_pred HHHHHHhcc
Confidence 999987644
No 40
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=5.2e-34 Score=227.48 Aligned_cols=163 Identities=20% Similarity=0.383 Sum_probs=146.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
.+||+++|++|||||||++++.++.+...+.+|++.++..+.+.+++..+.+++||++|+++|..++..+++++|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999999999888899999999888888999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhCC-CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHH
Q 041042 163 FDLTSRCTLKSVIRWYQQARKCNQ-TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKIL 241 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f 241 (268)
||+++++||+.+..|+..+..... +.|.++||||+|+. ....+..+++..+++.++++++++||++|.|++++|
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 156 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT-----DKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAF 156 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc-----cccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHH
Confidence 999999999999999999988763 44557999999972 122344678889999999999999999999999999
Q ss_pred HHHHHHHhc
Q 041042 242 KFITAKLFD 250 (268)
Q Consensus 242 ~~l~~~i~~ 250 (268)
.+|++.+.+
T Consensus 157 ~~i~~~~~~ 165 (166)
T cd01869 157 MTMAREIKK 165 (166)
T ss_pred HHHHHHHHh
Confidence 999988753
No 41
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=4.3e-34 Score=233.13 Aligned_cols=168 Identities=22% Similarity=0.265 Sum_probs=143.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
.||+++|++|||||||+++|.++.|...+.+|++.++. +.+.+++..+.+++|||+|++.|..++..+++++|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999998889999887764 56677888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCCcc-------chhchHHHHHHHHHHhC-CeEEEEcCCCC
Q 041042 164 DLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLPID-------LQWTIASQARAYAKALN-ATLFFSSATYN 234 (268)
Q Consensus 164 D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 234 (268)
|+++++||+.+. .|+..+....++.|+||||||+||....... ...+..+++..+++..+ +.|++|||++|
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 999999999997 6999998877666678999999974221110 01233667888888887 78999999999
Q ss_pred cCHHHHHHHHHHHHhcCc
Q 041042 235 INVNKILKFITAKLFDIP 252 (268)
Q Consensus 235 ~~i~~~f~~l~~~i~~~~ 252 (268)
.||+++|++|++.++...
T Consensus 160 ~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 160 RGVNEAFTEAARVALNVR 177 (189)
T ss_pred CCHHHHHHHHHHHHhccc
Confidence 999999999999998654
No 42
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=3.1e-34 Score=235.41 Aligned_cols=156 Identities=22% Similarity=0.301 Sum_probs=140.5
Q ss_pred EcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCh
Q 041042 89 LGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSR 168 (268)
Q Consensus 89 lG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~ 168 (268)
+|++|||||||+++|+.+.|...+.+|+|.++..+.+.+++..+.+++|||+|+++|..++..||+++|++|+|||+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888999999999988899999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHH
Q 041042 169 CTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248 (268)
Q Consensus 169 ~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~i 248 (268)
.||+.+..|+.++.+..++.|+||||||+||. .+.+..+. ..+++..++.|++|||++|.||+++|++|++.+
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~------~~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK------DRKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEECcccc------cccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999887666668999999972 12222333 468888999999999999999999999999988
Q ss_pred hcC
Q 041042 249 FDI 251 (268)
Q Consensus 249 ~~~ 251 (268)
.+.
T Consensus 154 ~~~ 156 (200)
T smart00176 154 IGD 156 (200)
T ss_pred Hhc
Confidence 765
No 43
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=4e-34 Score=237.95 Aligned_cols=164 Identities=21% Similarity=0.374 Sum_probs=146.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECC-eEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRG-ARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
+||+++|++|||||||+++|.++.|...+.+|++.++..+.+.+++ ..+.+++|||+|++.+..++..|++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5999999999999999999999999999999999999888888865 579999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhCC---CCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 163 FDLTSRCTLKSVIRWYQQARKCNQ---TAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~~~---~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
||+++++||+.+..|+..+.+... ..+| |+||||+||. ..+.+..+++..+++.++++++++||++|+||+
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~-----~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~ 155 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE-----HNRTVKDDKHARFAQANGMESCLVSAKTGDRVN 155 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc-----cccccCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 999999999999999999988743 2344 6999999972 223455778899999999999999999999999
Q ss_pred HHHHHHHHHHhcCc
Q 041042 239 KILKFITAKLFDIP 252 (268)
Q Consensus 239 ~~f~~l~~~i~~~~ 252 (268)
++|+++++.+....
T Consensus 156 ~lf~~l~~~l~~~~ 169 (215)
T cd04109 156 LLFQQLAAELLGVD 169 (215)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988754
No 44
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=6.9e-34 Score=233.81 Aligned_cols=166 Identities=22% Similarity=0.411 Sum_probs=150.0
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
..+||+++|++|||||||+++|.++.|...+.+|++.++....+.+++..+.+++|||+|++.|..++..++++++++|+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 46999999999999999999999999988899999999988888889989999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHH
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKIL 241 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f 241 (268)
|||+++++||+.+..|++.+....+..|++|||||+|+. .......+++..+++..+++++++||++|.||+++|
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf 159 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDP-----ERKVVETEDAYKFAGQMGISLFETSAKENINVEEMF 159 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc-----cccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHH
Confidence 999999999999999999998877666778999999972 122334677888999999999999999999999999
Q ss_pred HHHHHHHhcCc
Q 041042 242 KFITAKLFDIP 252 (268)
Q Consensus 242 ~~l~~~i~~~~ 252 (268)
++|++.++...
T Consensus 160 ~~l~~~~~~~~ 170 (199)
T cd04110 160 NCITELVLRAK 170 (199)
T ss_pred HHHHHHHHHhh
Confidence 99999888754
No 45
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=5.5e-34 Score=229.54 Aligned_cols=163 Identities=21% Similarity=0.305 Sum_probs=140.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|++|||||||+.+|..+.|...+.+|++. .....+.+++..+.+++|||+|++.|..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 79999999999999999999999999999999874 44566778999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCC------c-cchhchHHHHHHHHHHhCC-eEEEEcCCCC
Q 041042 164 DLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLP------I-DLQWTIASQARAYAKALNA-TLFFSSATYN 234 (268)
Q Consensus 164 D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~------~-~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 234 (268)
|+++++||+++. .|+..+....++.|.||||||+||..+-. . ..+.+..+++.+++++++. +|+||||++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 160 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence 999999999996 69998887776666689999999732100 0 0123558899999999985 9999999999
Q ss_pred cCHHHHHHHHHHH
Q 041042 235 INVNKILKFITAK 247 (268)
Q Consensus 235 ~~i~~~f~~l~~~ 247 (268)
.|++++|+.+++.
T Consensus 161 ~~i~~~f~~l~~~ 173 (174)
T cd01871 161 KGLKTVFDEAIRA 173 (174)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999864
No 46
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=7e-34 Score=226.28 Aligned_cols=162 Identities=17% Similarity=0.334 Sum_probs=145.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|++|||||||+++|.++.+...+.+|++.++..+.+.+++..+.+++|||+|++.|..++..+++++|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 59999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhCC------CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCH
Q 041042 164 DLTSRCTLKSVIRWYQQARKCNQ------TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINV 237 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~~~------~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 237 (268)
|++++++|+.+..|+.++.+... ..|+++|+||+|+. . ......++.+.+++..+++++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~---~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT---K--HRAVSEDEGRLWAESKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc---c--ccccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 99999999999999999988753 33446999999972 1 2334477778889999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 041042 238 NKILKFITAKLFD 250 (268)
Q Consensus 238 ~~~f~~l~~~i~~ 250 (268)
+++|++|++.+++
T Consensus 156 ~~l~~~l~~~l~~ 168 (168)
T cd04119 156 NEMFQTLFSSIVD 168 (168)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988763
No 47
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=7.4e-34 Score=225.47 Aligned_cols=159 Identities=16% Similarity=0.263 Sum_probs=139.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|++|||||||++++..+.|...+.+|++ +...+.+.+++..+.+++|||+|+++|..++..|++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999999888889887 455577888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHH
Q 041042 164 DLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKIL 241 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f 241 (268)
|+++.++|+.+..|++.+.... .+.|.||||||+|+. . .+....+++..+++.++++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE----D-ERVVSREEGQALARQWGCPFYETSAKSKINVDEVF 155 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----c-cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 9999999999999999988763 345557999999972 1 22334667788888889999999999999999999
Q ss_pred HHHHHHH
Q 041042 242 KFITAKL 248 (268)
Q Consensus 242 ~~l~~~i 248 (268)
+++++.+
T Consensus 156 ~~l~~~~ 162 (163)
T cd04136 156 ADLVRQI 162 (163)
T ss_pred HHHHHhc
Confidence 9998765
No 48
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=1.6e-33 Score=223.87 Aligned_cols=160 Identities=23% Similarity=0.390 Sum_probs=143.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|++|||||||++++.++.|.+.+.+|.+.++..+.+.+++..+.+++|||+|+++|..++..+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999998888888888888778888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHH
Q 041042 164 DLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKF 243 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~ 243 (268)
|++++.+|+++..|+..+.+..++.|.+||+||+|+. . ...++...+++..+++++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~----~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD----P----SVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc----h----hHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999998876666778999999961 1 1234556778888999999999999999999999
Q ss_pred HHHHHhcC
Q 041042 244 ITAKLFDI 251 (268)
Q Consensus 244 l~~~i~~~ 251 (268)
+++.+.+.
T Consensus 153 l~~~~~~~ 160 (161)
T cd04124 153 AIKLAVSY 160 (161)
T ss_pred HHHHHHhc
Confidence 99888754
No 49
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=8.9e-34 Score=232.10 Aligned_cols=163 Identities=21% Similarity=0.296 Sum_probs=132.9
Q ss_pred eEEEEEEcCCCChHHHHHH-HHhcC-----CCCCCCCCCcce-eeEEEE--------EEECCeEEEEEEEeCCCcccccc
Q 041042 83 ALKISLLGDCHIGKTSFLE-KYVGD-----EKEQGGSPGEGL-NMMDKT--------LLVRGARISYSIWEVTGDAKAQD 147 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~-~l~~~-----~~~~~~~~t~~~-~~~~~~--------~~~~~~~~~l~i~Dt~G~~~~~~ 147 (268)
.+||+++|++|||||||+. ++.++ .|...+.||++. +.+... +.+++..+.+++|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4899999999999999995 66554 355678899863 333222 25789999999999999986 3
Q ss_pred chhhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCC--------------ccchhchH
Q 041042 148 HLPVACKDSIAILFMFDLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLP--------------IDLQWTIA 212 (268)
Q Consensus 148 ~~~~~~~~a~~vilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~--------------~~~~~~~~ 212 (268)
+...+|+++|++|+|||++++.||+++. .|++.+....++.|+||||||+||..... ...+.+..
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 5677899999999999999999999997 69999988776666689999999742100 01245568
Q ss_pred HHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHH
Q 041042 213 SQARAYAKALNATLFFSSATYNINVNKILKFITAK 247 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~ 247 (268)
++++++|++++++|+||||++|.||+++|+.+++.
T Consensus 160 ~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999864
No 50
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.7e-33 Score=224.00 Aligned_cols=160 Identities=18% Similarity=0.236 Sum_probs=140.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
++||+++|++|||||||++++..+.+...+.+|++..+. +.+.+++..+.+++|||+|+++|..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 479999999999999999999999998888899886654 6778889999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 163 FDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
||+++.++|+.+..|+..+.... .+.|.+|||||+|+.. ......+++..+++.++++++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 154 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-----ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEI 154 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh-----ccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHH
Confidence 99999999999999999987653 3455579999999731 1223356678889999999999999999999999
Q ss_pred HHHHHHHH
Q 041042 241 LKFITAKL 248 (268)
Q Consensus 241 f~~l~~~i 248 (268)
|.++++.+
T Consensus 155 ~~~l~~~l 162 (164)
T cd04175 155 FYDLVRQI 162 (164)
T ss_pred HHHHHHHh
Confidence 99998765
No 51
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.6e-33 Score=233.54 Aligned_cols=165 Identities=22% Similarity=0.443 Sum_probs=146.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLV-RGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
.+||+++|++|||||||+++|.++.+...+.+|+|.++..+.+.+ ++..+.+++|||+|+++|..++..+++++|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999998888899999998888877 4678999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC-CCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCN-QTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~-~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
|||+++++||+++..|+..+.... +..++ +|||||+|+. ....+..+++..+++.++++|+++||++|.||++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE-----SQRQVTREEAEKLAKDLGMKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc-----cccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHH
Confidence 999999999999999999998764 34455 6999999973 1234557788999999999999999999999999
Q ss_pred HHHHHHHHHhcCc
Q 041042 240 ILKFITAKLFDIP 252 (268)
Q Consensus 240 ~f~~l~~~i~~~~ 252 (268)
+|++|++.+.+..
T Consensus 157 ~f~~l~~~~~~~~ 169 (211)
T cd04111 157 AFELLTQEIYERI 169 (211)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887663
No 52
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=2.9e-33 Score=222.82 Aligned_cols=161 Identities=22% Similarity=0.448 Sum_probs=145.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
.+||+++|++|||||||++++.++.+...+.+|++.++..+.+..++..+.+++||++|++++..++..++++++++|+|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 58999999999999999999999999888999999999888999999889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHH
Q 041042 163 FDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKIL 241 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f 241 (268)
||+++.++|+.+..|+..+.......+| +|||||+|+. ..+....++...+++..+++++++||++|.|++++|
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 157 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR-----HLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAF 157 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-----ccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999999999999888765455 6999999972 123344677888898889999999999999999999
Q ss_pred HHHHHHH
Q 041042 242 KFITAKL 248 (268)
Q Consensus 242 ~~l~~~i 248 (268)
+++++.+
T Consensus 158 ~~l~~~i 164 (165)
T cd01868 158 KQLLTEI 164 (165)
T ss_pred HHHHHHh
Confidence 9998875
No 53
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.8e-33 Score=229.71 Aligned_cols=163 Identities=20% Similarity=0.263 Sum_probs=141.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFD 164 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D 164 (268)
||+++|++|||||||+++|..+.|...+.+|++..+. +.+.+++..+.+++|||+|+++|..++..|++++|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 6899999999999999999999998889999886653 566788889999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhC----CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 165 LTSRCTLKSVIRWYQQARKCN----QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 165 ~~~~~s~~~~~~~~~~i~~~~----~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
+++.+||+.+..|++.+.... .+.|+||||||+|+. . .+.+..+++..+++.++++|+++||++|.|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l 154 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV----Y-EREVSTEEGAALARRLGCEFIEASAKTNVNVERA 154 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc----c-cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHH
Confidence 999999999999999987653 244557999999972 1 2334466778899999999999999999999999
Q ss_pred HHHHHHHHhcCcc
Q 041042 241 LKFITAKLFDIPW 253 (268)
Q Consensus 241 f~~l~~~i~~~~~ 253 (268)
|+++++.+.+...
T Consensus 155 ~~~l~~~l~~~~~ 167 (190)
T cd04144 155 FYTLVRALRQQRQ 167 (190)
T ss_pred HHHHHHHHHHhhc
Confidence 9999988876553
No 54
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.9e-33 Score=227.96 Aligned_cols=164 Identities=20% Similarity=0.393 Sum_probs=146.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|++|||||||+++|.++.|...+.+|+|.++..+.+.+++..+.+++|||+|++.|..++..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998889999999888888889999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHH
Q 041042 164 DLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILK 242 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~ 242 (268)
|+++++||+.+..|+..+.......+| ||||||+|+. +...+..+++..+++..+++++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV-----NNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc-----ccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999887654444 7999999972 1223346777889999999999999999999999999
Q ss_pred HHHHHHhcCc
Q 041042 243 FITAKLFDIP 252 (268)
Q Consensus 243 ~l~~~i~~~~ 252 (268)
++++.+....
T Consensus 156 ~l~~~~~~~~ 165 (188)
T cd04125 156 LLVKLIIKRL 165 (188)
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 55
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=2.4e-33 Score=222.42 Aligned_cols=159 Identities=19% Similarity=0.397 Sum_probs=143.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEEC--CeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVR--GARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
+||+++|++|||||||+++|.++.+...+.+|++.++..+.+.++ +..+.+++|||+|+++|..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999988999999999887777777 788999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHH
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKIL 241 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f 241 (268)
|||++++++|+.+..|+..+.....+.|+|+|+||+|+. . ...+..+++..+++..+++++++||++|.|++++|
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~---~--~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 155 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL---D--QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELF 155 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc---c--ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 999999999999999999998777677778999999972 1 12334678889999999999999999999999999
Q ss_pred HHHHHH
Q 041042 242 KFITAK 247 (268)
Q Consensus 242 ~~l~~~ 247 (268)
++|...
T Consensus 156 ~~l~~~ 161 (162)
T cd04106 156 EYLAEK 161 (162)
T ss_pred HHHHHh
Confidence 999764
No 56
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=3.7e-33 Score=220.80 Aligned_cols=159 Identities=14% Similarity=0.225 Sum_probs=140.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
++||+++|++|||||||+++|.++.|...+.+|++..+ .+.+.+++..+.+++|||+|+++|..++..|+++++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999999999888899887655 56678888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 163 FDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
||+++..+|+++..|+..+.+.. .+.|++||+||+|+. .+....+++..+++..+++++++||++|.|++++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 153 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA------ARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEA 153 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc------cceecHHHHHHHHHHhCCeEEEecCCCCCCHHHH
Confidence 99999999999999999988764 344557999999972 2334467788889999999999999999999999
Q ss_pred HHHHHHHH
Q 041042 241 LKFITAKL 248 (268)
Q Consensus 241 f~~l~~~i 248 (268)
|+++++.+
T Consensus 154 ~~~l~~~~ 161 (162)
T cd04138 154 FYTLVREI 161 (162)
T ss_pred HHHHHHHh
Confidence 99998754
No 57
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=3e-33 Score=228.14 Aligned_cols=164 Identities=14% Similarity=0.217 Sum_probs=144.0
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
..+||+++|++|||||||+++|.++.|...+.+|++.++ .+.+.+++..+.+++|||+|+++|..++..|++++|++|+
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 359999999999999999999999999888999988766 4677889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCC--CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCNQ--TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
|||+++.++|+.+..|+..+..... +.|.||||||+|+. . ...+..+++..+++.+++++++|||++|.||++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~----~-~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD----S-ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----c-ccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHH
Confidence 9999999999999999999877642 44557999999962 1 223346678888888999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 041042 240 ILKFITAKLFDI 251 (268)
Q Consensus 240 ~f~~l~~~i~~~ 251 (268)
+|++|++.+.+.
T Consensus 158 ~~~~l~~~l~~~ 169 (189)
T PTZ00369 158 AFYELVREIRKY 169 (189)
T ss_pred HHHHHHHHHHHH
Confidence 999999888765
No 58
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=4e-33 Score=232.07 Aligned_cols=167 Identities=24% Similarity=0.413 Sum_probs=149.9
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
..+.+||+++|++|||||||+++|.++.+...+.+|+|.++..+.+.+++..+.+++|||+|+++|..++..++++++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 44679999999999999999999999999888999999999989999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
|+|||+++.++|+.+..|+..+.......+| ++||||+||. ..+.+..++++.++..++++++++||++|.|++
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~-----~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~ 163 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN-----HLRSVAEEDGQALAEKEGLSFLETSALEATNVE 163 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc-----cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999999999999887654445 7999999972 223344678889999999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 041042 239 KILKFITAKLFDI 251 (268)
Q Consensus 239 ~~f~~l~~~i~~~ 251 (268)
++|+++++.+.+.
T Consensus 164 ~lf~~l~~~i~~~ 176 (216)
T PLN03110 164 KAFQTILLEIYHI 176 (216)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888664
No 59
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=4.3e-33 Score=223.05 Aligned_cols=161 Identities=20% Similarity=0.325 Sum_probs=143.2
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
..+||+++|++|||||||+++|.++.|.+.+.+|+|.++..+.+.+++..+.+++||++|++++..++..+++++|++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 46999999999999999999999999988889999998888888899999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCC-----CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhC-CeEEEEcCCCCc
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCNQ-----TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALN-ATLFFSSATYNI 235 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~~-----~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 235 (268)
|||+++.+||+.+..|+..+..... +.|.+|||||+|+ ..+....+++++++++++ ++++++||++|.
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl------~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 157 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDI------PERQVSTEEAQAWCRENGDYPYFETSAKDAT 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccc------cccccCHHHHHHHHHHCCCCeEEEEECCCCC
Confidence 9999999999999999998876532 2344799999997 233445778899999988 489999999999
Q ss_pred CHHHHHHHHHHHH
Q 041042 236 NVNKILKFITAKL 248 (268)
Q Consensus 236 ~i~~~f~~l~~~i 248 (268)
|++++|+++++.+
T Consensus 158 ~v~~~~~~~~~~~ 170 (170)
T cd04116 158 NVAAAFEEAVRRV 170 (170)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998753
No 60
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=2.2e-33 Score=233.36 Aligned_cols=165 Identities=21% Similarity=0.362 Sum_probs=138.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|++|||||||+++|..+.|.. +.+|+|.++..+.+ ..+.+.+|||+|++.|..++..|++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999864 68899887764433 4678999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhCC-CCceEEEEeCCCCCCCCC--------------ccchhchHHHHHHHHHHhC-----
Q 041042 164 DLTSRCTLKSVIRWYQQARKCNQ-TAIPIIIGTKFDDFIQLP--------------IDLQWTIASQARAYAKALN----- 223 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~~~----- 223 (268)
|+++++||+++..|+..+.+... +.|.||||||+||..... +..+.+..+++..++++.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 99999999999988887776543 345579999999843100 0134556889999999987
Q ss_pred ---------CeEEEEcCCCCcCHHHHHHHHHHHHhcCcc
Q 041042 224 ---------ATLFFSSATYNINVNKILKFITAKLFDIPW 253 (268)
Q Consensus 224 ---------~~~~~~Sa~~~~~i~~~f~~l~~~i~~~~~ 253 (268)
++|+||||++|.||+++|..+++.+++...
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~ 194 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLIL 194 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999998886553
No 61
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.8e-33 Score=227.92 Aligned_cols=166 Identities=20% Similarity=0.389 Sum_probs=147.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQ-GGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
+||+++|++|||||||+++|.++.+.. .+.+|++.++..+.+.+++..+.+++|||+|++++..++..+++++|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 599999999999999999999998854 6788999888888888999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHH
Q 041042 163 FDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKIL 241 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f 241 (268)
||+++.++|+++..|+..+....+..+| +|||||+|+. . .+.+..+++..+++.++++|+++||++|.|++++|
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~---~--~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~ 155 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS---G--ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAF 155 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch---h--ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999888765555 6999999972 1 23334677889999999999999999999999999
Q ss_pred HHHHHHHhcCccc
Q 041042 242 KFITAKLFDIPWT 254 (268)
Q Consensus 242 ~~l~~~i~~~~~~ 254 (268)
++|++.+.+....
T Consensus 156 ~~l~~~~~~~~~~ 168 (191)
T cd04112 156 TAVAKELKHRKYE 168 (191)
T ss_pred HHHHHHHHHhccc
Confidence 9999999888644
No 62
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=4.9e-33 Score=221.11 Aligned_cols=160 Identities=17% Similarity=0.240 Sum_probs=139.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
++||+++|++|||||||++++..+.+...+.+|++ ++..+.+.+++..+.+++|||+|+++|..++..|++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999999999888888876 55667888899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 163 FDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
||+++.+||+++..|+..+.... .+.|.+|||||+|+.. ...+..++...+++..+++++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES-----EREVSSAEGRALAEEWGCPFMETSAKSKTMVNEL 154 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh-----cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHH
Confidence 99999999999999999987763 3455579999999721 1223356678888888999999999999999999
Q ss_pred HHHHHHHH
Q 041042 241 LKFITAKL 248 (268)
Q Consensus 241 f~~l~~~i 248 (268)
|.++++.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd04176 155 FAEIVRQM 162 (163)
T ss_pred HHHHHHhc
Confidence 99998754
No 63
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=3.5e-33 Score=221.36 Aligned_cols=154 Identities=22% Similarity=0.345 Sum_probs=129.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|++|||||||+++|+.+.|...+.++ +..+ .+.+.+++..+.+++|||+|++. ..+++++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999999987776655 4445 47788999999999999999975 35778999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHh-CCeEEEEcCCCCcCHHHH
Q 041042 164 DLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKAL-NATLFFSSATYNINVNKI 240 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~ 240 (268)
|++|++||+++..|++.+.... ++.|.+|||||+||. ....+.+..+++.+++++. ++.|+||||++|.||+++
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~---~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~ 150 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS---ESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERV 150 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh---hcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHH
Confidence 9999999999999999998875 344557999999962 1123445577888999887 589999999999999999
Q ss_pred HHHHHHH
Q 041042 241 LKFITAK 247 (268)
Q Consensus 241 f~~l~~~ 247 (268)
|+.+++.
T Consensus 151 f~~~~~~ 157 (158)
T cd04103 151 FQEAAQK 157 (158)
T ss_pred HHHHHhh
Confidence 9999865
No 64
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=9.4e-33 Score=220.95 Aligned_cols=164 Identities=19% Similarity=0.343 Sum_probs=147.2
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
..+||+++|.+|||||||++++.++.+...+.+|.|.++....+.+++..+.+.+|||+|++++..+...+++++|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999999988888999999988888899989999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC-CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCN-QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~-~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
|||+++++||+.+..|+..+.... ++.|+||||||.|+. .......+++..+++..++.++++||++|.|++++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE-----SRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEA 157 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc-----cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999998865 445557999999973 12334567788899999999999999999999999
Q ss_pred HHHHHHHHhc
Q 041042 241 LKFITAKLFD 250 (268)
Q Consensus 241 f~~l~~~i~~ 250 (268)
|.++++.+++
T Consensus 158 ~~~~~~~~~~ 167 (168)
T cd01866 158 FINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 65
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=4.9e-33 Score=226.26 Aligned_cols=169 Identities=20% Similarity=0.239 Sum_probs=145.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVR-GARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
+||+++|++|||||||+++|.++.|...+.+|++.++.. .+... +..+.+++|||+|+++|..++..+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999999998999998877654 45554 7889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCC-eEEEEcCCCCcCHHHH
Q 041042 163 FDLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNA-TLFFSSATYNINVNKI 240 (268)
Q Consensus 163 ~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~ 240 (268)
||+++.+||+++. .|+..+....++.|+||||||+|+....+ ..+.+..++++++++.+++ ++++|||++|.||+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN-LDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc-ccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999996 69988887776677789999999732211 1123447789999999998 9999999999999999
Q ss_pred HHHHHHHHhcCccc
Q 041042 241 LKFITAKLFDIPWT 254 (268)
Q Consensus 241 f~~l~~~i~~~~~~ 254 (268)
|+.+++.+......
T Consensus 159 f~~l~~~~~~~~~~ 172 (187)
T cd04132 159 FDTAIEEALKKEGK 172 (187)
T ss_pred HHHHHHHHHhhhhh
Confidence 99999999877644
No 66
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=7e-33 Score=220.81 Aligned_cols=161 Identities=21% Similarity=0.395 Sum_probs=142.9
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
+.+||+++|++|||||||++++..+.+...+.+|.+.++..+.+.+++..+.+++|||+|+++|..++..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999999988888999988888888899988999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCC-CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCC-eEEEEcCCCCcCHHH
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCNQ-TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNA-TLFFSSATYNINVNK 239 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~ 239 (268)
|||++++++|+.+..|+..+..... +.|+|+|+||+|+. ..+....+++..+++.+++ .++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE-----EQREVLFEEACTLAEKNGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc-----cccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHH
Confidence 9999999999999999999987654 44557999999973 1233446778889998886 689999999999999
Q ss_pred HHHHHHHH
Q 041042 240 ILKFITAK 247 (268)
Q Consensus 240 ~f~~l~~~ 247 (268)
+|+++++.
T Consensus 157 ~~~~l~~~ 164 (165)
T cd01864 157 AFLLMATE 164 (165)
T ss_pred HHHHHHHh
Confidence 99999875
No 67
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=9.1e-33 Score=225.81 Aligned_cols=168 Identities=20% Similarity=0.322 Sum_probs=147.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQ-GGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
+||+++|++|||||||+++|+++.|.. .+.+|+|.++..+.+.+++..+.+++|||+|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 599999999999999999999999874 6888999988888899999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHH
Q 041042 163 FDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILK 242 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~ 242 (268)
||+++.++|+++..|++.+....++.|.+||+||+|+..... ....+..+++.+++...+++++++||++|.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDR-SLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccccccc-ccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999988766666689999999732111 1123335678889999999999999999999999999
Q ss_pred HHHHHHhcCc
Q 041042 243 FITAKLFDIP 252 (268)
Q Consensus 243 ~l~~~i~~~~ 252 (268)
++++.+.+..
T Consensus 160 ~i~~~~~~~~ 169 (193)
T cd04118 160 KVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHhc
Confidence 9999887653
No 68
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=1.5e-32 Score=227.73 Aligned_cols=166 Identities=19% Similarity=0.320 Sum_probs=148.6
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
+.+||+|+|++|||||||+++|.+..|...+.+|++.++..+.+.+++..+.+++|||+|++.|..++..+++++|++|+
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 46999999999999999999999999988889999999988889999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCCCC-ceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCNQTA-IPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~~~~-~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
|||+++.++|+.+..|+..+....... |.++|+||+|+. ..+....++++++++.++++++++||+++.||+++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~ 159 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA-----HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 159 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc-----cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999887765444 447999999972 22334578889999999999999999999999999
Q ss_pred HHHHHHHHhcCc
Q 041042 241 LKFITAKLFDIP 252 (268)
Q Consensus 241 f~~l~~~i~~~~ 252 (268)
|+++++.+++..
T Consensus 160 f~~l~~~~~~~~ 171 (210)
T PLN03108 160 FIKTAAKIYKKI 171 (210)
T ss_pred HHHHHHHHHHHh
Confidence 999999887653
No 69
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=1.3e-32 Score=221.00 Aligned_cols=164 Identities=21% Similarity=0.323 Sum_probs=141.6
Q ss_pred EEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeC
Q 041042 86 ISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDL 165 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~ 165 (268)
|+|+|++|||||||+++|.++.|...+.+|++..+ ...+.+++..+.+++|||+|++.|..++..+++++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 68999999999999999999999888888877555 45677889999999999999999999999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCC-------ccchhchHHHHHHHHHHhCC-eEEEEcCCCCcC
Q 041042 166 TSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLP-------IDLQWTIASQARAYAKALNA-TLFFSSATYNIN 236 (268)
Q Consensus 166 ~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 236 (268)
++.+||+++. .|+..+....++.|+||||||+|+..... .....+..+++.++++..++ .|++|||++|.|
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 159 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG 159 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 9999999996 69999988877777789999999742110 00122457888999999996 999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 041042 237 VNKILKFITAKLFD 250 (268)
Q Consensus 237 i~~~f~~l~~~i~~ 250 (268)
|+++|+.+++.+++
T Consensus 160 v~~lf~~l~~~~~~ 173 (174)
T smart00174 160 VREVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988764
No 70
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=1.5e-32 Score=217.92 Aligned_cols=160 Identities=20% Similarity=0.368 Sum_probs=143.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|++|||||||++++.++.+...+.+|.+.++....+.+++..+.+++||++|++.|..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 59999999999999999999999998889999998888888889999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhCC-CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHH
Q 041042 164 DLTSRCTLKSVIRWYQQARKCNQ-TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILK 242 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~ 242 (268)
|+++.++|+.+..|+..+..... +.|.+||+||+|+. .......+++..+++..++.++++||+++.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 155 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA-----DQREVTFLEASRFAQENGLLFLETSALTGENVEEAFL 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc-----hhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 99999999999999999877654 44557999999972 1233447788999999999999999999999999999
Q ss_pred HHHHHH
Q 041042 243 FITAKL 248 (268)
Q Consensus 243 ~l~~~i 248 (268)
++++.+
T Consensus 156 ~~~~~~ 161 (161)
T cd04113 156 KCARSI 161 (161)
T ss_pred HHHHhC
Confidence 998763
No 71
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=1.6e-32 Score=218.88 Aligned_cols=158 Identities=16% Similarity=0.229 Sum_probs=137.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|++|||||||+++++++.|...+.+|++..+ .+.+..++..+.+++|||+|+++|..++..+++.+|++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999999888889887555 456667788899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhC----CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 164 DLTSRCTLKSVIRWYQQARKCN----QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~~----~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
|+++.+||+++..|++.+.... ++.|.+|||||+|+.. .+.+..+++..++..+++.|++|||++|.|+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~-----~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~ 155 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH-----KREVSSNEGAACATEWNCAFMETSAKTNHNVQE 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc-----cCeecHHHHHHHHHHhCCcEEEeecCCCCCHHH
Confidence 9999999999999998887653 3455579999999721 133446678888999999999999999999999
Q ss_pred HHHHHHHH
Q 041042 240 ILKFITAK 247 (268)
Q Consensus 240 ~f~~l~~~ 247 (268)
+|++|++.
T Consensus 156 ~f~~l~~~ 163 (165)
T cd04140 156 LFQELLNL 163 (165)
T ss_pred HHHHHHhc
Confidence 99999753
No 72
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=2.9e-32 Score=218.53 Aligned_cols=161 Identities=22% Similarity=0.420 Sum_probs=143.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccc-cchhhhhcCCcEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQ-DHLPVACKDSIAILF 161 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-~~~~~~~~~a~~vil 161 (268)
.+||+++|++|||||||++++..+.+...+.+|++.++..+.+.+++..+.+++|||+|+++|. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4899999999999999999999999988899999999988889999999999999999999886 578899999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCC---CcC
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATY---NIN 236 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~ 236 (268)
|||++++++|+.+..|++.+.... .+.|.|||+||+|+. ..+.+..+++.++++..+++|++|||++ +.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~ 156 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR-----EQIQVPTDLAQRFADAHSMPLFETSAKDPSENDH 156 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch-----hhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCC
Confidence 999999999999999999998764 345557999999972 1233446788899999999999999999 999
Q ss_pred HHHHHHHHHHHH
Q 041042 237 VNKILKFITAKL 248 (268)
Q Consensus 237 i~~~f~~l~~~i 248 (268)
++++|..+++.+
T Consensus 157 i~~~f~~l~~~~ 168 (170)
T cd04115 157 VEAIFMTLAHKL 168 (170)
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
No 73
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=3.5e-32 Score=216.29 Aligned_cols=160 Identities=14% Similarity=0.225 Sum_probs=139.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|++|||||||+++|.++.+...+.+|++. ...+.+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIED-SYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 59999999999999999999999998888888774 44567788888999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHH
Q 041042 164 DLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKIL 241 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f 241 (268)
|+++.++|+.+..|+..+.+.. .+.|.++||||+|+. . .+....+++..+++..+++++++||++|.|++++|
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 154 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE----S-ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----c-cceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHH
Confidence 9999999999999998887653 244557999999972 1 12344677888999999999999999999999999
Q ss_pred HHHHHHHh
Q 041042 242 KFITAKLF 249 (268)
Q Consensus 242 ~~l~~~i~ 249 (268)
++|++.+.
T Consensus 155 ~~l~~~~~ 162 (164)
T smart00173 155 YDLVREIR 162 (164)
T ss_pred HHHHHHHh
Confidence 99998764
No 74
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=3.4e-32 Score=216.39 Aligned_cols=160 Identities=18% Similarity=0.332 Sum_probs=139.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC--CCCCCCCCCcceeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD--EKEQGGSPGEGLNMMDKTLLVR-GARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
+||+++|++|||||||++++..+ .|...+.+|+|.++..+.+.++ +..+.+++|||+|++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 59999999999999999999865 6888899999999887777775 57799999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 161 FMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 161 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
+|||+++.++|+.+..|++.+.......|.|+|+||+|+. + .......+++.++..++++++++||++|.|++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~---~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 155 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA---D--KAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEP 155 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc---c--ccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHH
Confidence 9999999999999999999998876666668999999972 1 1223355567788888999999999999999999
Q ss_pred HHHHHHHH
Q 041042 241 LKFITAKL 248 (268)
Q Consensus 241 f~~l~~~i 248 (268)
|+.+++.+
T Consensus 156 ~~~l~~~~ 163 (164)
T cd04101 156 FESLARAF 163 (164)
T ss_pred HHHHHHHh
Confidence 99998875
No 75
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=3.7e-32 Score=223.19 Aligned_cols=165 Identities=16% Similarity=0.215 Sum_probs=137.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhhhhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDH--------LPVACKD 155 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~~~ 155 (268)
+||+|+|++|||||||+++|+++.|...+.||++.++....+.+++..+.+++|||+|.+.+... ...++++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999998889999988877777888999999999999997655322 2345789
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhC----CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHH-HhCCeEEEEc
Q 041042 156 SIAILFMFDLTSRCTLKSVIRWYQQARKCN----QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAK-ALNATLFFSS 230 (268)
Q Consensus 156 a~~vilv~D~~~~~s~~~~~~~~~~i~~~~----~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~S 230 (268)
+|++|+|||+++++||+.+..|++.+.... .+.|+||||||+|+. . .+.+..++++.++. .++++|++||
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~e~S 155 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ----R-HRFAPRHVLSVLVRKSWKCGYLECS 155 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc----c-cccccHHHHHHHHHHhcCCcEEEec
Confidence 999999999999999999999999887763 345557999999973 1 12334566777764 5689999999
Q ss_pred CCCCcCHHHHHHHHHHHHhcCcc
Q 041042 231 ATYNINVNKILKFITAKLFDIPW 253 (268)
Q Consensus 231 a~~~~~i~~~f~~l~~~i~~~~~ 253 (268)
|++|.||+++|+.+++.+.....
T Consensus 156 ak~g~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 156 AKYNWHILLLFKELLISATTRGR 178 (198)
T ss_pred CCCCCCHHHHHHHHHHHhhccCC
Confidence 99999999999999998887653
No 76
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=3.6e-32 Score=218.60 Aligned_cols=162 Identities=22% Similarity=0.344 Sum_probs=138.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|++|||||||++++.++.|...+.+|. .+.....+.+++..+.+++|||+|+++|..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 599999999999999999999999988888886 4555667888998999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCC-------ccchhchHHHHHHHHHHhCC-eEEEEcCCCC
Q 041042 164 DLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLP-------IDLQWTIASQARAYAKALNA-TLFFSSATYN 234 (268)
Q Consensus 164 D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 234 (268)
|+++++||+.+. .|+..+....++.|.++||||+|+..... ...+.+..+++..+++..++ .|++|||++|
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~ 159 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQ 159 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 999999999985 79988887655666689999999732110 01234457889999999987 8999999999
Q ss_pred cCHHHHHHHHHH
Q 041042 235 INVNKILKFITA 246 (268)
Q Consensus 235 ~~i~~~f~~l~~ 246 (268)
.||+++|+.++.
T Consensus 160 ~~v~~lf~~~~~ 171 (173)
T cd04130 160 KNLKEVFDTAIL 171 (173)
T ss_pred CCHHHHHHHHHh
Confidence 999999998764
No 77
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=3.4e-32 Score=218.06 Aligned_cols=163 Identities=15% Similarity=0.081 Sum_probs=140.2
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKE-QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
+.+||+++|++|||||||+++|+++.|. ..+.+|++.++..+.+.+++..+.+++||++|++.+..++..+++++|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 4699999999999999999999999998 889999999888788888998899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCe-EEEEcCCCCcCHHH
Q 041042 161 FMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNAT-LFFSSATYNINVNK 239 (268)
Q Consensus 161 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~ 239 (268)
+|||++++++|+.+..|+..+... .+.|.++|+||+|+. + .......+..++++.+++. ++++||++|.|+++
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 156 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFML-GEIPCLFVAAKADLD----E-QQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNE 156 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhccC-CCCeEEEEEEccccc----c-cccccccCHHHHHHHcCCCCCEEEEeccCccHHH
Confidence 999999999999999999876432 244557999999972 1 1222234567788888874 69999999999999
Q ss_pred HHHHHHHHHhc
Q 041042 240 ILKFITAKLFD 250 (268)
Q Consensus 240 ~f~~l~~~i~~ 250 (268)
+|+.+++.+.+
T Consensus 157 lf~~l~~~~~~ 167 (169)
T cd01892 157 LFTKLATAAQY 167 (169)
T ss_pred HHHHHHHHhhC
Confidence 99999998764
No 78
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=9.1e-32 Score=213.67 Aligned_cols=160 Identities=16% Similarity=0.206 Sum_probs=138.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
.+||+++|++|||||||++++.++.+...+.+|++..+ .....+++..+.+++|||+|++++..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 48999999999999999999999998888888887554 45667889889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 163 FDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
||+++.++|+.+..|+..+.+.. .+.|++||+||+|+. . ......+++.++++..+++++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 155 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE----H-QRKVSREEGQELARKLKIPYIETSAKDRLNVDKA 155 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc----c-cceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHH
Confidence 99999999999999999987752 344557999999972 1 1223456788899999999999999999999999
Q ss_pred HHHHHHHH
Q 041042 241 LKFITAKL 248 (268)
Q Consensus 241 f~~l~~~i 248 (268)
|+++++.+
T Consensus 156 ~~~l~~~~ 163 (164)
T cd04145 156 FHDLVRVI 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
No 79
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=1.3e-31 Score=212.69 Aligned_cols=162 Identities=22% Similarity=0.445 Sum_probs=144.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|++|||||||++++.+..+...+.+|++.++....+.+++..+.+++||++|++.+..+...+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 59999999999999999999999998888899999888888889999899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhCC-CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHH
Q 041042 164 DLTSRCTLKSVIRWYQQARKCNQ-TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILK 242 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~ 242 (268)
|+++.++++.+..|+..+..+.. +.|.++|+||+|+. . ......++++++++..+++++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~---~--~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~ 155 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE---D--QRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFE 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc---c--ccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999988764 44447999999962 1 123346778888999999999999999999999999
Q ss_pred HHHHHHhc
Q 041042 243 FITAKLFD 250 (268)
Q Consensus 243 ~l~~~i~~ 250 (268)
++.+.+.+
T Consensus 156 ~i~~~~~~ 163 (164)
T smart00175 156 ELAREILK 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
No 80
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=2.3e-31 Score=220.77 Aligned_cols=171 Identities=22% Similarity=0.399 Sum_probs=146.4
Q ss_pred CCceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 041042 79 DNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIA 158 (268)
Q Consensus 79 ~~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~ 158 (268)
+....+||+++|++|||||||+++|.++.+ ..+.+|++.++....+.+++..+.+++|||+|+++|..++..+++++|+
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG 88 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 355579999999999999999999999887 4678889988888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHH-HHHHHHHhCC--CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCc
Q 041042 159 ILFMFDLTSRCTLKSVIR-WYQQARKCNQ--TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNI 235 (268)
Q Consensus 159 vilv~D~~~~~s~~~~~~-~~~~i~~~~~--~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 235 (268)
+|+|||++++++|+++.. |...+..+.. +.+.+|||||+|+. . ......++...+++.+++.|+++||++|.
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~----~-~~~i~~~~~~~~~~~~~~~~~e~SAk~~~ 163 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE----S-ERDVSREEGMALAKEHGCLFLECSAKTRE 163 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----c-cCccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 999999999999999975 7776665532 34557999999973 1 12234677888899999999999999999
Q ss_pred CHHHHHHHHHHHHhcCccch
Q 041042 236 NVNKILKFITAKLFDIPWTL 255 (268)
Q Consensus 236 ~i~~~f~~l~~~i~~~~~~~ 255 (268)
|++++|++|.+.+.+.+...
T Consensus 164 ~v~~l~~~l~~~~~~~~~~~ 183 (211)
T PLN03118 164 NVEQCFEELALKIMEVPSLL 183 (211)
T ss_pred CHHHHHHHHHHHHHhhhhhh
Confidence 99999999999998876443
No 81
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=1.8e-31 Score=211.88 Aligned_cols=161 Identities=23% Similarity=0.422 Sum_probs=144.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
++||+++|++|||||||++++.++.+...+.+|.+.++..+.+.+++..+.+.+||++|++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999999887889999888888999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhCCC-CceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHH
Q 041042 163 FDLTSRCTLKSVIRWYQQARKCNQT-AIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKIL 241 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f 241 (268)
||+++.++|+.+..|+..+...... .|.++|+||+|+. . ......++...+++..++.++++||++|.|++++|
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE----S-KRQVSTEEAQEYADENGLLFFETSAKTGENVNELF 155 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc----c-cCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999999999999887644 4457999999962 1 23344667888899999999999999999999999
Q ss_pred HHHHHHH
Q 041042 242 KFITAKL 248 (268)
Q Consensus 242 ~~l~~~i 248 (268)
++|++.+
T Consensus 156 ~~l~~~l 162 (163)
T cd01860 156 TEIAKKL 162 (163)
T ss_pred HHHHHHh
Confidence 9999875
No 82
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=1.1e-31 Score=227.26 Aligned_cols=159 Identities=19% Similarity=0.281 Sum_probs=137.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|++|||||||+++|+++.|...+.+|++ ++..+.+.+++..+.++||||+|++.|..++..++.++|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999888899987 666788889999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHh----------CCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHH-hCCeEEEEcCC
Q 041042 164 DLTSRCTLKSVIRWYQQARKC----------NQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKA-LNATLFFSSAT 232 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~----------~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~ 232 (268)
|+++.+||+++..|++++... ..+.|.||||||+|+. . .+.+..+++.+++.. .++.++++||+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~----~-~~~v~~~ei~~~~~~~~~~~~~evSAk 154 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD----F-PREVQRDEVEQLVGGDENCAYFEVSAK 154 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch----h-ccccCHHHHHHHHHhcCCCEEEEEeCC
Confidence 999999999999999998754 1244557999999973 1 123446677777654 47889999999
Q ss_pred CCcCHHHHHHHHHHHH
Q 041042 233 YNINVNKILKFITAKL 248 (268)
Q Consensus 233 ~~~~i~~~f~~l~~~i 248 (268)
+|.||+++|++|+..+
T Consensus 155 tg~gI~elf~~L~~~~ 170 (247)
T cd04143 155 KNSNLDEMFRALFSLA 170 (247)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999999865
No 83
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=2.5e-31 Score=210.62 Aligned_cols=159 Identities=23% Similarity=0.435 Sum_probs=142.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|.+|||||||++++.+..+...+.++.+.++..+.+.+++..+.+++|||+|++++..++..+++++|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999998888999999999999999998899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhCC-CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHH
Q 041042 164 DLTSRCTLKSVIRWYQQARKCNQ-TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILK 242 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~ 242 (268)
|++++++|+.+..|+..+..... +.|.++|+||+|+. .......++...+++..+++++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS-----DKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFR 155 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc-----ccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999877654 35557999999962 2233446778888888999999999999999999999
Q ss_pred HHHHH
Q 041042 243 FITAK 247 (268)
Q Consensus 243 ~l~~~ 247 (268)
++.+.
T Consensus 156 ~i~~~ 160 (161)
T cd01861 156 KIASA 160 (161)
T ss_pred HHHHh
Confidence 99875
No 84
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=220.27 Aligned_cols=171 Identities=19% Similarity=0.261 Sum_probs=152.7
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVR-GARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
..+|++|+|+.+||||+|+..+..+.|...|.||+- +.++..+.++ |+.+.+.+|||+||+.|..++...|.++|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 468999999999999999999999999999999997 4555778885 99999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCC------Cc-cchhchHHHHHHHHHHhC-CeEEEEcC
Q 041042 161 FMFDLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQL------PI-DLQWTIASQARAYAKALN-ATLFFSSA 231 (268)
Q Consensus 161 lv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~------~~-~~~~~~~~~~~~~~~~~~-~~~~~~Sa 231 (268)
+||++.+++||+++. +|+.++++++++.|.||||+|.||+... .. ....+..+++..++++.| ..|+||||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa 161 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA 161 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence 999999999999987 8999999999999999999999985211 00 112455899999999999 67999999
Q ss_pred CCCcCHHHHHHHHHHHHhcCcc
Q 041042 232 TYNINVNKILKFITAKLFDIPW 253 (268)
Q Consensus 232 ~~~~~i~~~f~~l~~~i~~~~~ 253 (268)
++..|++++|+..+..++..++
T Consensus 162 ~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 162 LTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhCCcHHHHHHHHHHHhcccc
Confidence 9999999999999999988765
No 85
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=3.9e-31 Score=212.34 Aligned_cols=165 Identities=17% Similarity=0.243 Sum_probs=140.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|.+|||||||+++|.++.|...+.+|++.. ....+.+++..+.+.+|||+|++.|..++..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 599999999999999999999999988888887644 3456778888999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCCc-------cchhchHHHHHHHHHHhCC-eEEEEcCCCC
Q 041042 164 DLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLPI-------DLQWTIASQARAYAKALNA-TLFFSSATYN 234 (268)
Q Consensus 164 D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 234 (268)
|++++++|+.+. .|+..+....++.|++|||||+|+...-.. ....+..+++..+++..++ +|++|||++|
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999999996 788888877666677899999997321100 0123447888999999986 7999999999
Q ss_pred cCHHHHHHHHHHHHh
Q 041042 235 INVNKILKFITAKLF 249 (268)
Q Consensus 235 ~~i~~~f~~l~~~i~ 249 (268)
.||+++|+.+++.++
T Consensus 160 ~gi~~~f~~~~~~~~ 174 (174)
T cd04135 160 KGLKTVFDEAILAIL 174 (174)
T ss_pred CCHHHHHHHHHHHhC
Confidence 999999999998763
No 86
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=5.6e-31 Score=208.70 Aligned_cols=158 Identities=22% Similarity=0.406 Sum_probs=141.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|++|||||||+++|.+..+...+.+|.+.++....+.+++..+.+++|||+|++.+..+...+++++|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 59999999999999999999999988888999999888888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHH
Q 041042 164 DLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKIL 241 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f 241 (268)
|+++.++|+.+..|++.+..+. .+.|.++||||+|+. ......++...+++..+++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 154 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE------NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAF 154 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc------ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHH
Confidence 9999999999999999998874 344457999999972 23344677888999999999999999999999999
Q ss_pred HHHHHH
Q 041042 242 KFITAK 247 (268)
Q Consensus 242 ~~l~~~ 247 (268)
+.+.+.
T Consensus 155 ~~~~~~ 160 (161)
T cd01863 155 EELVEK 160 (161)
T ss_pred HHHHHh
Confidence 999875
No 87
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.98 E-value=2.8e-31 Score=211.53 Aligned_cols=159 Identities=17% Similarity=0.299 Sum_probs=135.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccc-ccchhhhhcCCcEEEEEE
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKA-QDHLPVACKDSIAILFMF 163 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-~~~~~~~~~~a~~vilv~ 163 (268)
||+++|++|||||||+++++.+.|...+.+|++..+ .+.+.+++..+.+++|||+|++.+ ......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 699999999999999999999988888888876554 466788999999999999999863 456778899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhC---CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCC-cCHHH
Q 041042 164 DLTSRCTLKSVIRWYQQARKCN---QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYN-INVNK 239 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~~---~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~ 239 (268)
|+++.+||+.+..|+..+.... .+.|.|+||||+|+. ..+.+..+++..+++..+++|+++||++| .||++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~ 154 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL-----HYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHS 154 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH-----HhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHH
Confidence 9999999999999999888764 255667999999962 12334467888999999999999999999 49999
Q ss_pred HHHHHHHHHh
Q 041042 240 ILKFITAKLF 249 (268)
Q Consensus 240 ~f~~l~~~i~ 249 (268)
+|+++++.+.
T Consensus 155 ~f~~l~~~~~ 164 (165)
T cd04146 155 VFHELCREVR 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 88
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.98 E-value=4.2e-31 Score=220.57 Aligned_cols=162 Identities=17% Similarity=0.211 Sum_probs=138.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhc-CCcEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKE-QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACK-DSIAILF 161 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~-~a~~vil 161 (268)
+||+++|++|||||||+++|..+.+. ..+.++.+.++..+.+.+++..+.+++|||+|++. .+...+++ ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 59999999999999999999988886 67777777678888899999999999999999983 34456667 9999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
|||+++++||+.+..|+..+.... .+.|.|||+||+|+. ..+.+..+++.+++..++++|+++||++|.||++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~-----~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA-----RSREVSVQEGRACAVVFDCKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc-----ccceecHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 999999999999999999988764 345668999999972 1233446677889999999999999999999999
Q ss_pred HHHHHHHHHhcCc
Q 041042 240 ILKFITAKLFDIP 252 (268)
Q Consensus 240 ~f~~l~~~i~~~~ 252 (268)
+|+++++.+....
T Consensus 154 l~~~l~~~~~~~~ 166 (221)
T cd04148 154 LLEGIVRQIRLRR 166 (221)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999887544
No 89
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.98 E-value=7e-31 Score=210.15 Aligned_cols=164 Identities=21% Similarity=0.334 Sum_probs=143.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|.+|||||||++++.++.+...+.+|++.++..+.+.+++..+.+++||++|++.+..++..+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 59999999999999999999999998888899999988888899999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhCC-----CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhC-CeEEEEcCCCCcCH
Q 041042 164 DLTSRCTLKSVIRWYQQARKCNQ-----TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALN-ATLFFSSATYNINV 237 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~~~-----~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i 237 (268)
|++++++|+++..|.+.+..... +.|+++|+||+|+. . ......++...+++..+ ++++++||++|.|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~---~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 155 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE---E--KRQVSTKKAQQWCQSNGNIPYFETSAKEAINV 155 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc---c--ccccCHHHHHHHHHHcCCceEEEEECCCCCCH
Confidence 99999999999999988765532 44557999999972 1 22334667788888887 89999999999999
Q ss_pred HHHHHHHHHHHhcCc
Q 041042 238 NKILKFITAKLFDIP 252 (268)
Q Consensus 238 ~~~f~~l~~~i~~~~ 252 (268)
+++|+++.+.+.+..
T Consensus 156 ~~l~~~i~~~~~~~~ 170 (172)
T cd01862 156 EQAFETIARKALEQE 170 (172)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887763
No 90
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.98 E-value=1.9e-31 Score=217.55 Aligned_cols=164 Identities=16% Similarity=0.238 Sum_probs=148.4
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
..+||+++|.+|||||+|+.+|..+.|...|.||++ +.+.+.+.+++..+.+.|+||+|++.|..+...|++++|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 358999999999999999999999999999999998 6777999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHh-CCCC-ceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKC-NQTA-IPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~-~~~~-~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
||+++|+.||+.+..+++.|.+. .... |.|+||||+||. ..+.+..++++.++..++++|+|+||+.+.||++
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~-----~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~ 155 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLE-----RERQVSEEEGKALARSWGCAFIETSAKLNYNVDE 155 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccch-----hccccCHHHHHHHHHhcCCcEEEeeccCCcCHHH
Confidence 99999999999999999999443 3344 447999999972 2256669999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 041042 240 ILKFITAKLFDI 251 (268)
Q Consensus 240 ~f~~l~~~i~~~ 251 (268)
+|..|++.+-..
T Consensus 156 ~F~~L~r~~~~~ 167 (196)
T KOG0395|consen 156 VFYELVREIRLP 167 (196)
T ss_pred HHHHHHHHHHhh
Confidence 999999987763
No 91
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.98 E-value=8.4e-31 Score=209.58 Aligned_cols=161 Identities=16% Similarity=0.236 Sum_probs=139.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
.+||+++|.+|||||||+++|.++.+...+.+|++..+ .+.+.+++..+.+++|||+|+++|..++..+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 37999999999999999999999999888889888654 57778889899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhC-CeEEEEcCCCCcCHHH
Q 041042 163 FDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALN-ATLFFSSATYNINVNK 239 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~ 239 (268)
||++++++|+.+..|...+.+.. .+.|.++|+||.|+. ..+....+++..+++.++ ++++++||++|.|+++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~-----~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~ 154 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE-----DDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDE 154 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc-----ccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHH
Confidence 99999999999999999887642 345557999999972 123344667778888888 8999999999999999
Q ss_pred HHHHHHHHHh
Q 041042 240 ILKFITAKLF 249 (268)
Q Consensus 240 ~f~~l~~~i~ 249 (268)
+|+++++.++
T Consensus 155 ~f~~i~~~~~ 164 (168)
T cd04177 155 VFIDLVRQII 164 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998664
No 92
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.98 E-value=1.4e-30 Score=209.28 Aligned_cols=164 Identities=20% Similarity=0.294 Sum_probs=138.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
.||+++|++|||||||+++|.++.|...+.+|++..+. ..+.+++..+.+++|||+|++.|..++..+++++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 69999999999999999999999998889999886654 56778889999999999999999999889999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCCc-------cchhchHHHHHHHHHHhCC-eEEEEcCCCC
Q 041042 164 DLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLPI-------DLQWTIASQARAYAKALNA-TLFFSSATYN 234 (268)
Q Consensus 164 D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 234 (268)
|+++.++|+.+. .|+..+....++.|+++|+||+|+...... ....+...+++++++..+. ++++|||++|
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTK 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccC
Confidence 999999999986 699988877666777899999997321000 0112335778888888875 8999999999
Q ss_pred cCHHHHHHHHHHHH
Q 041042 235 INVNKILKFITAKL 248 (268)
Q Consensus 235 ~~i~~~f~~l~~~i 248 (268)
.|++++|++|++.+
T Consensus 161 ~~v~~lf~~l~~~~ 174 (175)
T cd01870 161 EGVREVFEMATRAA 174 (175)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998765
No 93
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.97 E-value=3e-30 Score=204.07 Aligned_cols=160 Identities=24% Similarity=0.461 Sum_probs=140.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|.+|||||||+++|.++.+...+.++++.++....+.+.+..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 59999999999999999999999988778888887887778888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhCCCCc-eEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHH
Q 041042 164 DLTSRCTLKSVIRWYQQARKCNQTAI-PIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILK 242 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~ 242 (268)
|+++.++++.+..|++.+........ +++|+||+|+. .......+++.++++..+++++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~-----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~ 155 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE-----RQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFL 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-----cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999988765444 46999999972 1223345677788888999999999999999999999
Q ss_pred HHHHHH
Q 041042 243 FITAKL 248 (268)
Q Consensus 243 ~l~~~i 248 (268)
++.+.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04123 156 SLAKRM 161 (162)
T ss_pred HHHHHh
Confidence 998875
No 94
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=6.1e-30 Score=204.34 Aligned_cols=163 Identities=20% Similarity=0.389 Sum_probs=142.4
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
...+||+++|.+|||||||++++.++.+...+.+|++.++..+.+.+++..+.+.+||++|++.|...+..+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 34699999999999999999999988888888889998888888899999999999999999999999899999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 161 FMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 161 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
+|||+++.++|+.+..|+..+.......+| ++|+||+|+. . .+....+..+.+.+.....++++||++|.|+++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~----~-~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA----E-RREVSQQRAEEFSDAQDMYYLETSAKESDNVEK 159 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc----c-ccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHH
Confidence 999999999999999999998887654454 7999999962 1 223335566777887788999999999999999
Q ss_pred HHHHHHHHH
Q 041042 240 ILKFITAKL 248 (268)
Q Consensus 240 ~f~~l~~~i 248 (268)
+|++|.+.+
T Consensus 160 l~~~i~~~~ 168 (169)
T cd04114 160 LFLDLACRL 168 (169)
T ss_pred HHHHHHHHh
Confidence 999999765
No 95
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=4.3e-30 Score=209.18 Aligned_cols=170 Identities=21% Similarity=0.283 Sum_probs=143.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
+.||+|+|++|||||||++++..+.+...+.+|++..+. ..+.+++..+.+.+||++|++.+......+++++|++++|
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 369999999999999999999988888888888776654 4667788889999999999999988888889999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCCcc-----chhchHHHHHHHHHHhCC-eEEEEcCCCCc
Q 041042 163 FDLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLPID-----LQWTIASQARAYAKALNA-TLFFSSATYNI 235 (268)
Q Consensus 163 ~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 235 (268)
||+++.++|+.+. .|+..+....++.|+||||||+|+....... .+.+..+++..+++..++ +||+|||++|.
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 9999999999997 6999998877777778999999973211110 233446778899999985 89999999999
Q ss_pred CHHHHHHHHHHHHhcCcc
Q 041042 236 NVNKILKFITAKLFDIPW 253 (268)
Q Consensus 236 ~i~~~f~~l~~~i~~~~~ 253 (268)
||+++|+++++.+.....
T Consensus 160 ~v~~~f~~l~~~~~~~~~ 177 (187)
T cd04129 160 GVDDVFEAATRAALLVRK 177 (187)
T ss_pred CHHHHHHHHHHHHhcccC
Confidence 999999999988876653
No 96
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=9.8e-30 Score=211.54 Aligned_cols=167 Identities=22% Similarity=0.341 Sum_probs=146.4
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
+...+||+++|++|||||||+++++.+.+...+.+|++.++....+..++..+.+++|||+|+++|..++..+++.++++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~ 85 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA 85 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence 55569999999999999999999999999889999999999888888899999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
++|||+++..+|..+..|+..+.....+.++++||||+|+. ..... .+...+++..++.++++||++|.|+++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~------~~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 158 (215)
T PTZ00132 86 IIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK------DRQVK-ARQITFHRKKNLQYYDISAKSNYNFEK 158 (215)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc------cccCC-HHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999998776665557899999962 11222 233467788899999999999999999
Q ss_pred HHHHHHHHHhcCcc
Q 041042 240 ILKFITAKLFDIPW 253 (268)
Q Consensus 240 ~f~~l~~~i~~~~~ 253 (268)
+|.+|++.+...+.
T Consensus 159 ~f~~ia~~l~~~p~ 172 (215)
T PTZ00132 159 PFLWLARRLTNDPN 172 (215)
T ss_pred HHHHHHHHHhhccc
Confidence 99999999987763
No 97
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=1.6e-29 Score=200.41 Aligned_cols=161 Identities=16% Similarity=0.225 Sum_probs=139.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|++|||||||++++....+...+.++++..+ .+...+++..+.+++|||+|++.+..++..+++.++++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5999999999999999999999999888888877554 466778889999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHH
Q 041042 164 DLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKIL 241 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f 241 (268)
|++++.+|+.+..|+..+.... .+.|+++|+||+|+. . ......++...+++.++++++++||++|.|++++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~---~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 154 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLE---D--KRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccc---c--ccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHH
Confidence 9999999999999999888763 345567999999972 1 12234566777888889999999999999999999
Q ss_pred HHHHHHHhc
Q 041042 242 KFITAKLFD 250 (268)
Q Consensus 242 ~~l~~~i~~ 250 (268)
+.+.+.+.+
T Consensus 155 ~~l~~~~~~ 163 (164)
T cd04139 155 YDLVREIRQ 163 (164)
T ss_pred HHHHHHHHh
Confidence 999987753
No 98
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.97 E-value=1.4e-29 Score=207.80 Aligned_cols=150 Identities=19% Similarity=0.239 Sum_probs=123.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEEC-----CeEEEEEEEeCCCccccccchhhhhcCCcE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVR-----GARISYSIWEVTGDAKAQDHLPVACKDSIA 158 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~ 158 (268)
+||+++|++|||||||+++|+++.|...+.+|+|.++..+.+.++ ++.+.+++|||+|+++|..++..||+++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 599999999999999999999999999999999988887777764 578999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC-------------------C-CCceEEEEeCCCCCCCCCccchhchHHHHHHH
Q 041042 159 ILFMFDLTSRCTLKSVIRWYQQARKCN-------------------Q-TAIPIIIGTKFDDFIQLPIDLQWTIASQARAY 218 (268)
Q Consensus 159 vilv~D~~~~~s~~~~~~~~~~i~~~~-------------------~-~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~ 218 (268)
+|+|||+++++||+++..|+.++.... . +.|+||||||+||.... .............+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r-~~~~~~~~~~~~~i 159 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK-ESSGNLVLTARGFV 159 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc-ccchHHHhhHhhhH
Confidence 999999999999999999999997642 2 33446999999973110 00011112345677
Q ss_pred HHHhCCeEEEEcCCCC
Q 041042 219 AKALNATLFFSSATYN 234 (268)
Q Consensus 219 ~~~~~~~~~~~Sa~~~ 234 (268)
+++.+++.++.+++++
T Consensus 160 a~~~~~~~i~~~c~~~ 175 (202)
T cd04102 160 AEQGNAEEINLNCTNG 175 (202)
T ss_pred HHhcCCceEEEecCCc
Confidence 8999999999988754
No 99
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=2e-30 Score=206.85 Aligned_cols=154 Identities=17% Similarity=0.123 Sum_probs=128.1
Q ss_pred EEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeC
Q 041042 86 ISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDL 165 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~ 165 (268)
|+++|++|||||||+++|.++.+...+.||+|.+. ..+++..+.+++||++|+++|..++..+++++|++|+|||+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 79999999999999999999988888999998653 33456678899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhch--HHHHHHHHHHhCCeEEEEcCCC------CcCH
Q 041042 166 TSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTI--ASQARAYAKALNATLFFSSATY------NINV 237 (268)
Q Consensus 166 ~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~------~~~i 237 (268)
++..+|..++.|+..+....++.|.++||||+|+..... .... ..++..++++.++.+++|||++ ++||
T Consensus 78 t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v 154 (164)
T cd04162 78 ADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARS---VQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAV 154 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCC---HHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHH
Confidence 999999999999998876555666689999999732110 0111 1245677778889999999888 9999
Q ss_pred HHHHHHHHH
Q 041042 238 NKILKFITA 246 (268)
Q Consensus 238 ~~~f~~l~~ 246 (268)
+++|+.++.
T Consensus 155 ~~~~~~~~~ 163 (164)
T cd04162 155 KDLLSQLIN 163 (164)
T ss_pred HHHHHHHhc
Confidence 999999864
No 100
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=5.9e-30 Score=204.92 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=122.7
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
..+||+++|.+|||||||+++|..+.+. .+.||+|.++. .+. ...+.+++|||+|++++..++..+++++|++|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 3589999999999999999999988774 56788887764 233 346789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHh--CCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHH-----HhCCeEEEEcCCCC
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKC--NQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAK-----ALNATLFFSSATYN 234 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 234 (268)
|||+++..+|+++..|+.++... .++.|.+||+||+|+.. .+..+++.++++ ...+.++++||++|
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-------~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g 155 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD-------AMKPHEIQEKLGLTRIRDRNWYVQPSCATSG 155 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc-------CCCHHHHHHHcCCCccCCCcEEEEEeeCCCC
Confidence 99999999999998888776543 23456679999999621 123445555442 22357899999999
Q ss_pred cCHHHHHHHHHH
Q 041042 235 INVNKILKFITA 246 (268)
Q Consensus 235 ~~i~~~f~~l~~ 246 (268)
.|++++|++|.+
T Consensus 156 ~gv~~~~~~l~~ 167 (168)
T cd04149 156 DGLYEGLTWLSS 167 (168)
T ss_pred CChHHHHHHHhc
Confidence 999999999864
No 101
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=2.9e-29 Score=197.08 Aligned_cols=157 Identities=23% Similarity=0.456 Sum_probs=141.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|.+|||||||++++.++.+...+.+|.+.++....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888899999998888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhC-CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHH
Q 041042 164 DLTSRCTLKSVIRWYQQARKCN-QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILK 242 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~~-~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~ 242 (268)
|+++.++++.+..|+..+.... ...|.++|+||+|+. .......+++.+++...+++++++||+++.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-----~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 155 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE-----DQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQ 155 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc-----ccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 9999999999999999998887 344557999999962 1233457888889999999999999999999999999
Q ss_pred HHH
Q 041042 243 FIT 245 (268)
Q Consensus 243 ~l~ 245 (268)
+|.
T Consensus 156 ~i~ 158 (159)
T cd00154 156 SLA 158 (159)
T ss_pred HHh
Confidence 986
No 102
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=8e-30 Score=205.46 Aligned_cols=155 Identities=19% Similarity=0.223 Sum_probs=121.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
.+||+++|++|||||||++++..+.+. .+.||+|.++.. +.. ..+.+++|||+|++++..++..|++++|++|+|
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999999888774 578898877643 333 457899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHh--CCCCceEEEEeCCCCCCCCCccchhchHHHHHHH-----HHHhCCeEEEEcCCCCc
Q 041042 163 FDLTSRCTLKSVIRWYQQARKC--NQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAY-----AKALNATLFFSSATYNI 235 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 235 (268)
||++++++|+++..|+..+... ..+.|++|||||+||....+ .+++... ++...+.++++||++|.
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMK-------AAEITEKLGLHSIRDRNWYIQPTCATSGD 160 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCC-------HHHHHHHhCccccCCCcEEEEEeeCCCCC
Confidence 9999999999999888877543 23445579999999732111 1222111 12223457789999999
Q ss_pred CHHHHHHHHHHHHh
Q 041042 236 NVNKILKFITAKLF 249 (268)
Q Consensus 236 ~i~~~f~~l~~~i~ 249 (268)
|++++|++|.+.+.
T Consensus 161 gv~e~~~~l~~~~~ 174 (175)
T smart00177 161 GLYEGLTWLSNNLK 174 (175)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999987653
No 103
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=1.2e-29 Score=201.21 Aligned_cols=152 Identities=20% Similarity=0.235 Sum_probs=118.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|.+|||||||++++..+.|. .+.||+|.++. .+.. ..+.+++|||+|++++..++..|++++|++|+||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999888886 57888887653 3333 4678999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHh-C-CCCceEEEEeCCCCCCCCCccchhchHHHHHHHH----HHhCCeEEEEcCCCCcCH
Q 041042 164 DLTSRCTLKSVIRWYQQARKC-N-QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYA----KALNATLFFSSATYNINV 237 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~-~-~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i 237 (268)
|+++..+|+.+..|+..+... . ...|++||+||+|+... ....+....+. ...++.++++||++|+||
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv 149 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA------MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGL 149 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC------CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCH
Confidence 999999999999888777543 2 24455799999997311 11112222221 223456789999999999
Q ss_pred HHHHHHHHH
Q 041042 238 NKILKFITA 246 (268)
Q Consensus 238 ~~~f~~l~~ 246 (268)
+++|++|.+
T Consensus 150 ~~~~~~l~~ 158 (159)
T cd04150 150 YEGLDWLSN 158 (159)
T ss_pred HHHHHHHhc
Confidence 999999864
No 104
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=4.9e-29 Score=199.00 Aligned_cols=162 Identities=18% Similarity=0.251 Sum_probs=127.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|++|||||||+++|.++.|...+..+ ..++ .....+++..+.+++|||+|++.+...+..+++.+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 48999999999999999999999986654443 3232 344556778899999999999988888888899999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhC--CeEEEEcCCCCcCHHHH
Q 041042 164 DLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALN--ATLFFSSATYNINVNKI 240 (268)
Q Consensus 164 D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~ 240 (268)
|++++++|+.+. .|+..++...++.|+++|+||+|+. +........+++..+++.+. .++++|||++|.|++++
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 155 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLR---DGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEV 155 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc---cccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHH
Confidence 999999999985 7888888776666668999999973 11111112344444444443 37999999999999999
Q ss_pred HHHHHHHHhc
Q 041042 241 LKFITAKLFD 250 (268)
Q Consensus 241 f~~l~~~i~~ 250 (268)
|+.+.+.+.+
T Consensus 156 f~~~~~~~~~ 165 (166)
T cd01893 156 FYYAQKAVLH 165 (166)
T ss_pred HHHHHHHhcC
Confidence 9999988765
No 105
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=1.6e-29 Score=202.50 Aligned_cols=157 Identities=18% Similarity=0.181 Sum_probs=127.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFD 164 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D 164 (268)
||+++|.+|||||||+++|.++.+. .+.+|+|.++. .+. ...+.+++|||+|++.+..++..+++++|++++|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~~~--~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--TVE--YKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--EEE--ECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 6899999999999999999998775 47888887764 233 345789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhC------CeEEEEcCCCCcC
Q 041042 165 LTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALN------ATLFFSSATYNIN 236 (268)
Q Consensus 165 ~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~ 236 (268)
++++++|+++..|+..+.+.. .+.|++||+||+|+. .....+++.++++..+ +.+++|||++|.|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 148 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVA-------GALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMG 148 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc-------cCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCC
Confidence 999999999999998886542 234557999999962 1233555666654322 3678899999999
Q ss_pred HHHHHHHHHHHHhcCcc
Q 041042 237 VNKILKFITAKLFDIPW 253 (268)
Q Consensus 237 i~~~f~~l~~~i~~~~~ 253 (268)
|+++|++|++.+.+.++
T Consensus 149 v~~~f~~l~~~~~~~~~ 165 (169)
T cd04158 149 LYEGLDWLSRQLVAAGV 165 (169)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 99999999998877654
No 106
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=7e-29 Score=198.35 Aligned_cols=162 Identities=21% Similarity=0.301 Sum_probs=135.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|.+|||||||+++|.++.+...+.+|+... ....+..++..+.+++||++|++.+..+...+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDN-YSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 599999999999999999999999877788876544 4456677889999999999999999888899999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCCcc------chhchHHHHHHHHHHhCC-eEEEEcCCCCc
Q 041042 164 DLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLPID------LQWTIASQARAYAKALNA-TLFFSSATYNI 235 (268)
Q Consensus 164 D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 235 (268)
|+++..+|.... .|+..+.....+.|.++||||+|+....... ...+..+++.+++..+++ +|+++||++|.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 999999998876 6888888877767778999999974221110 012236778889999988 99999999999
Q ss_pred CHHHHHHHHHH
Q 041042 236 NVNKILKFITA 246 (268)
Q Consensus 236 ~i~~~f~~l~~ 246 (268)
|++++|++|++
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
No 107
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.8e-29 Score=204.44 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=122.7
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
..+||+++|++|||||||++++..+.+. .+.||+|.++. .+. ...+.+++||++|+++++.++..||+++|++|+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 3589999999999999999999988875 57889887653 333 345789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHh--CCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCC--------eEEEEcC
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKC--NQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNA--------TLFFSSA 231 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa 231 (268)
|||+++.++|+++..|+..+... .++.|++|||||+|+... ...+ ++.+..++ .+++|||
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~-------~~~~---~~~~~l~l~~~~~~~~~~~~~Sa 160 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-------MNAA---EITDKLGLHSLRQRHWYIQSTCA 160 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC-------CCHH---HHHHHhCccccCCCceEEEeccC
Confidence 99999999999998887776432 234555799999997321 1122 23333332 3567999
Q ss_pred CCCcCHHHHHHHHHHHHhcC
Q 041042 232 TYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 232 ~~~~~i~~~f~~l~~~i~~~ 251 (268)
++|+||+++|++|++.+.++
T Consensus 161 ~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 161 TSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred CCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999887654
No 108
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=8.6e-29 Score=203.31 Aligned_cols=164 Identities=17% Similarity=0.199 Sum_probs=135.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFD 164 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D 164 (268)
||+++|++|||||||+++|+++.+...+.+|++ ++....+.+.+..+.+++||++|++.|..++..++.++|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 799999999999999999999999888888875 4556678888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhCC--CCceEEEEeCCCCCCCCCccchhchHHHHHHHHH-HhCCeEEEEcCCCCcCHHHHH
Q 041042 165 LTSRCTLKSVIRWYQQARKCNQ--TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAK-ALNATLFFSSATYNINVNKIL 241 (268)
Q Consensus 165 ~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~f 241 (268)
+++.++|+.+..|+..+..... +.|.|||+||+|+. .. ......++..+... ..+++++++||++|.|++++|
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~---~~-~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 155 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSL---EE-ERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVF 155 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccc---cc-cccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHH
Confidence 9999999999999998877643 45557999999973 21 12222333444433 456889999999999999999
Q ss_pred HHHHHHHhcCcc
Q 041042 242 KFITAKLFDIPW 253 (268)
Q Consensus 242 ~~l~~~i~~~~~ 253 (268)
+++++.+....+
T Consensus 156 ~~l~~~~~~~~~ 167 (198)
T cd04147 156 KELLRQANLPYN 167 (198)
T ss_pred HHHHHHhhcccc
Confidence 999998775554
No 109
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=4e-29 Score=202.78 Aligned_cols=167 Identities=16% Similarity=0.162 Sum_probs=133.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLV-RGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
.+||+++|.+|||||||++++..+.+.. +.+|+|.++....+.+ ++..+.+++|||+|++++..++..+++++|++|+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCC-cCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 5899999999999999999999988864 4788887776666655 4467899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHH------HhCCeEEEEcCCC
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAK------ALNATLFFSSATY 233 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~ 233 (268)
|||+++.++++.+..|+.++.... .+.|.+||+||+|+.. ....+++..+.. ..+++++++||++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 154 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN-------ALSVSEVEKLLALHELSASTPWHVQPACAII 154 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc-------cCCHHHHHHHhCccccCCCCceEEEEeeccc
Confidence 999999999999999988887653 3455579999999621 112233333332 1235688999999
Q ss_pred CcCHHHHHHHHHHHHhcCccchhc
Q 041042 234 NINVNKILKFITAKLFDIPWTLER 257 (268)
Q Consensus 234 ~~~i~~~f~~l~~~i~~~~~~~~~ 257 (268)
|.|++++|++|++.+.+.....++
T Consensus 155 ~~gi~~l~~~l~~~l~~~~~~~~~ 178 (183)
T cd04152 155 GEGLQEGLEKLYEMILKRRKMLRQ 178 (183)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999776655444
No 110
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=1e-28 Score=194.90 Aligned_cols=158 Identities=18% Similarity=0.310 Sum_probs=138.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFD 164 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D 164 (268)
||+++|++|||||||++++.+..+...+.++.+ +...+.+.+++..+.+++||++|++.+..+...+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 799999999999999999999888888888877 5556777788888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhCC--CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHH
Q 041042 165 LTSRCTLKSVIRWYQQARKCNQ--TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILK 242 (268)
Q Consensus 165 ~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~ 242 (268)
+++.++++++..|+..+..... ..|.++|+||+|+. . ......+++..+++..+++++++||++|.|++++|+
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~---~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~ 154 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLE---N--ERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFK 154 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccc---c--cceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Confidence 9999999999999999887754 45557999999972 1 233456788889999999999999999999999999
Q ss_pred HHHHHH
Q 041042 243 FITAKL 248 (268)
Q Consensus 243 ~l~~~i 248 (268)
+|++.+
T Consensus 155 ~l~~~i 160 (160)
T cd00876 155 LLVREI 160 (160)
T ss_pred HHHhhC
Confidence 998753
No 111
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.97 E-value=2.5e-31 Score=205.40 Aligned_cols=169 Identities=18% Similarity=0.357 Sum_probs=155.8
Q ss_pred CCceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 041042 79 DNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIA 158 (268)
Q Consensus 79 ~~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~ 158 (268)
.....+|++|+|..+|||||+|++|+.+.|..+|..|+|++|....+.++++.+.+.+|||+||+.|..+...||++|.+
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa 95 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA 95 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence 35567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 159 ILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 159 vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
.++||+.+|+.||+.+..|++.+.......|-++|-||+|| + +......++++.+++...+.++.+|++...||.
T Consensus 96 ~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDl---v--eds~~~~~evE~lak~l~~RlyRtSvked~NV~ 170 (246)
T KOG4252|consen 96 SVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDL---V--EDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVM 170 (246)
T ss_pred eEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchh---h--HhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhH
Confidence 99999999999999999999999988877777999999998 2 223455889999999999999999999999999
Q ss_pred HHHHHHHHHHhcCc
Q 041042 239 KILKFITAKLFDIP 252 (268)
Q Consensus 239 ~~f~~l~~~i~~~~ 252 (268)
++|.+|++.+.++.
T Consensus 171 ~vF~YLaeK~~q~~ 184 (246)
T KOG4252|consen 171 HVFAYLAEKLTQQK 184 (246)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877664
No 112
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=3.8e-29 Score=202.78 Aligned_cols=157 Identities=17% Similarity=0.201 Sum_probs=121.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
.+||+++|++|||||||++++..+.+.. +.||+|.++. .+. ...+.+++|||+|++++..++..|++++|++|+|
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVE--YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 5899999999999999999998888854 7788887654 333 3457899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHh--CCCCceEEEEeCCCCCCCCCccchhchHHHHHH-----HHHHhCCeEEEEcCCCCc
Q 041042 163 FDLTSRCTLKSVIRWYQQARKC--NQTAIPIIIGTKFDDFIQLPIDLQWTIASQARA-----YAKALNATLFFSSATYNI 235 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 235 (268)
||+++.++|+.+..|+..+... ..+.|.+||+||.|+.... ..+++.. .++...+.++++||++|.
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~-------~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~ 164 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM-------STTEVTEKLGLHSVRQRNWYIQGCCATTAQ 164 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC-------CHHHHHHHhCCCcccCCcEEEEeeeCCCCC
Confidence 9999999999998877776432 2344557999999963211 1111111 122223456789999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 041042 236 NVNKILKFITAKLFDI 251 (268)
Q Consensus 236 ~i~~~f~~l~~~i~~~ 251 (268)
|++++|++|.+.+..+
T Consensus 165 gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 165 GLYEGLDWLSANIKKS 180 (182)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999877654
No 113
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=3.7e-28 Score=196.25 Aligned_cols=165 Identities=18% Similarity=0.219 Sum_probs=140.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
.||+++|.+|||||||++++.+..+...+.+|++..+ ...+.+++..+.+++|||+|+++|..++..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6999999999999999999999998888888877655 466777888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHH
Q 041042 164 DLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKIL 241 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f 241 (268)
|+++..+|+.+..|+..+.+.. .+.|.|+|+||+|+. . .+....++...+++.++++++++||++|.|+.++|
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 155 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH----T-QRQVSTEEGKELAESWGAAFLESSARENENVEEAF 155 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh----h-cCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999988887653 344668999999962 1 12233556778888889999999999999999999
Q ss_pred HHHHHHHhcCccc
Q 041042 242 KFITAKLFDIPWT 254 (268)
Q Consensus 242 ~~l~~~i~~~~~~ 254 (268)
.++.+.+...+..
T Consensus 156 ~~l~~~~~~~~~~ 168 (180)
T cd04137 156 ELLIEEIEKVENP 168 (180)
T ss_pred HHHHHHHHHhcCC
Confidence 9999988876543
No 114
>PLN00023 GTP-binding protein; Provisional
Probab=99.96 E-value=2e-28 Score=210.87 Aligned_cols=143 Identities=19% Similarity=0.298 Sum_probs=122.2
Q ss_pred CCceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECC-------------eEEEEEEEeCCCcccc
Q 041042 79 DNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRG-------------ARISYSIWEVTGDAKA 145 (268)
Q Consensus 79 ~~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-------------~~~~l~i~Dt~G~~~~ 145 (268)
+....+||+|+|+.|||||||+++|+++.|...+.+|+|.++..+.+.+++ +.+.++||||+|+++|
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 355579999999999999999999999999989999999999878777652 5789999999999999
Q ss_pred ccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC-------------CCceEEEEeCCCCCCCCCccc-hh--
Q 041042 146 QDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQ-------------TAIPIIIGTKFDDFIQLPIDL-QW-- 209 (268)
Q Consensus 146 ~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~-------------~~~~ilvgnK~Dl~~~~~~~~-~~-- 209 (268)
..++..||++++++|+|||+++.+||+++..|++.+..... +.++||||||+||. .... +.
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~---~~~~~r~~s 173 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIA---PKEGTRGSS 173 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccc---ccccccccc
Confidence 99999999999999999999999999999999999987631 23447999999973 1111 11
Q ss_pred -chHHHHHHHHHHhCC
Q 041042 210 -TIASQARAYAKALNA 224 (268)
Q Consensus 210 -~~~~~~~~~~~~~~~ 224 (268)
+..+++++||+++++
T Consensus 174 ~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 174 GNLVDAARQWVEKQGL 189 (334)
T ss_pred cccHHHHHHHHHHcCC
Confidence 247899999999985
No 115
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=2.8e-28 Score=195.94 Aligned_cols=155 Identities=20% Similarity=0.227 Sum_probs=123.5
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+++|++|||||||+++|.+..+ ..+.+|+|... ..+.++ .+.+++|||+|++.++.++..+++++|++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 34468999999999999999999998855 46778887443 445555 46789999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHh--CCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHH-----HhCCeEEEEcCC
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKC--NQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAK-----ALNATLFFSSAT 232 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 232 (268)
++|||+++..+|+++..|+..+... ..+.|++||+||+|+.+. ...+++.++++ ..+++++++||+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 158 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA-------LSEEEIREALELDKISSHHWRIQPCSAV 158 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC-------CCHHHHHHHhCccccCCCceEEEeccCC
Confidence 9999999999999999888887543 245566799999997321 12344444442 346789999999
Q ss_pred CCcCHHHHHHHHHH
Q 041042 233 YNINVNKILKFITA 246 (268)
Q Consensus 233 ~~~~i~~~f~~l~~ 246 (268)
+|.|++++|++++.
T Consensus 159 ~g~gi~~l~~~l~~ 172 (173)
T cd04154 159 TGEGLLQGIDWLVD 172 (173)
T ss_pred CCcCHHHHHHHHhc
Confidence 99999999999864
No 116
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=2.4e-28 Score=193.59 Aligned_cols=154 Identities=18% Similarity=0.213 Sum_probs=117.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCC-CCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDE-KEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+|+++|++|||||||+++|.+.. +...+.+|+|..+. .+ ....+.+++|||+|++++..++..+++++|++|+||
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SF--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EE--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 58999999999999999999876 45678888886543 22 234677999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhC----CCCceEEEEeCCCCCCCCCccchhchHHHHHHHH--HHhCCeEEEEcCCCCcCH
Q 041042 164 DLTSRCTLKSVIRWYQQARKCN----QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYA--KALNATLFFSSATYNINV 237 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~~----~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i 237 (268)
|+++..+|..+..|+..+.... .+.|.+||+||+|+... .......+...+. ....+.++++||++|.|+
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~----~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv 152 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA----LTAVKITQLLGLENIKDKPWHIFASNALTGEGL 152 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC----CCHHHHHHHhCCccccCceEEEEEeeCCCCCch
Confidence 9999999999999988876532 24555799999997311 1111111111122 122346899999999999
Q ss_pred HHHHHHHHH
Q 041042 238 NKILKFITA 246 (268)
Q Consensus 238 ~~~f~~l~~ 246 (268)
+++|++|.+
T Consensus 153 ~~~~~~l~~ 161 (162)
T cd04157 153 DEGVQWLQA 161 (162)
T ss_pred HHHHHHHhc
Confidence 999999864
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=6.3e-28 Score=191.00 Aligned_cols=155 Identities=17% Similarity=0.228 Sum_probs=119.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFD 164 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D 164 (268)
||+++|++|||||||+++|.++.+. .+.+|++.++. .+..+ ..+.+.+|||+|++.+..++..+++++|++|+|||
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~~~t~~~~~~--~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-TTIPTVGFNVE--MLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-cccCccCcceE--EEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999999875 45678876543 33333 45789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHH--HHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 165 LTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQ--ARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 165 ~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
+++..++..+..|+..+.+.. .+.|.+||+||+|+.... ........ ...++...++++++|||++|+|++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 153 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL---TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEA 153 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc---CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHH
Confidence 999999999998888876542 345567999999973211 11111111 12334445567999999999999999
Q ss_pred HHHHHH
Q 041042 241 LKFITA 246 (268)
Q Consensus 241 f~~l~~ 246 (268)
|++|.+
T Consensus 154 ~~~i~~ 159 (160)
T cd04156 154 FRKLAS 159 (160)
T ss_pred HHHHhc
Confidence 999864
No 118
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=4e-27 Score=189.70 Aligned_cols=144 Identities=22% Similarity=0.366 Sum_probs=126.4
Q ss_pred CCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC
Q 041042 106 DEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCN 185 (268)
Q Consensus 106 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~ 185 (268)
+.|.+.+.+|+|.++..+.+.+++..+.++||||+|+++|..++..|+++||++|+|||+++++||+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 46788899999999998999999999999999999999999999999999999999999999999999999999987765
Q ss_pred C-CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHHhcCccc
Q 041042 186 Q-TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIPWT 254 (268)
Q Consensus 186 ~-~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~i~~~~~~ 254 (268)
. ..|+||||||+||. ..+.+..+++..+++.+++.|++|||++|.||+++|++|++.+.+.+..
T Consensus 83 ~~~~piilVgNK~DL~-----~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 83 GKDVIIALVGNKTDLG-----DLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred CCCCeEEEEEECcccc-----cccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 3 44447999999973 1233456778889999999999999999999999999999999876533
No 119
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=2e-27 Score=191.21 Aligned_cols=153 Identities=17% Similarity=0.230 Sum_probs=120.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
.+||+++|.+|||||||++++..+.+.. +.+|++.++. .+.++ .+.+.+||++|++.+...+..+++++|++++|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999888764 6788887654 33333 57799999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHH----HHHhCCeEEEEcCCCCcC
Q 041042 163 FDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAY----AKALNATLFFSSATYNIN 236 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~ 236 (268)
||+++.++|..+..|+..+.... .+.|.+||+||+|+....+ ..+..+.+ ++..++++++|||++|.|
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~------~~~i~~~l~~~~~~~~~~~~~~~SA~~g~g 163 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT------PAEISESLGLTSIRDHTWHIQGCCALTGEG 163 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCC------HHHHHHHhCcccccCCceEEEecccCCCCC
Confidence 99999999999888777775542 3455579999999732111 11112222 234567899999999999
Q ss_pred HHHHHHHHHH
Q 041042 237 VNKILKFITA 246 (268)
Q Consensus 237 i~~~f~~l~~ 246 (268)
|+++|++|.+
T Consensus 164 i~e~~~~l~~ 173 (174)
T cd04153 164 LPEGLDWIAS 173 (174)
T ss_pred HHHHHHHHhc
Confidence 9999999874
No 120
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=2.2e-27 Score=187.84 Aligned_cols=154 Identities=19% Similarity=0.225 Sum_probs=114.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFD 164 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D 164 (268)
||+++|++|||||||++++..+.+. .+.+|++.++. .+. +..+.+++|||+|++.+..++..+++.+|++|+|||
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TVT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 6899999999999999999888775 46778876654 333 345779999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHH-h-CCCCceEEEEeCCCCCCCCCccchhchHHHH-HHHHHHhCCeEEEEcCCCCcCHHHHH
Q 041042 165 LTSRCTLKSVIRWYQQARK-C-NQTAIPIIIGTKFDDFIQLPIDLQWTIASQA-RAYAKALNATLFFSSATYNINVNKIL 241 (268)
Q Consensus 165 ~~~~~s~~~~~~~~~~i~~-~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~~i~~~f 241 (268)
+++..++.....|+..+.+ . ..+.|.+||+||+|+.+.. ......+.. .......+.+++++||++|.|++++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 152 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL---SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGM 152 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC---CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHH
Confidence 9999998877766655433 2 2345667999999973111 011111110 01112234579999999999999999
Q ss_pred HHHHH
Q 041042 242 KFITA 246 (268)
Q Consensus 242 ~~l~~ 246 (268)
++|++
T Consensus 153 ~~l~~ 157 (158)
T cd04151 153 DWLVN 157 (158)
T ss_pred HHHhc
Confidence 99875
No 121
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=5.5e-27 Score=187.46 Aligned_cols=155 Identities=14% Similarity=0.144 Sum_probs=120.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFD 164 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D 164 (268)
+|+++|.+|||||||+++|.++ +...+.+|+|.+. ..+..+ .+.+++||++|++.++.++..|++++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999977 7778889988653 344443 5778999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhch-HHHHHHHHHHhC--CeEEEEcCCCC-----
Q 041042 165 LTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTI-ASQARAYAKALN--ATLFFSSATYN----- 234 (268)
Q Consensus 165 ~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~Sa~~~----- 234 (268)
+++..+|+++..|+..+.... .+.|++||+||+|+...... .... ...+..++++.+ +.+++|||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~--~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~ 153 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLG--ADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI 153 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCH--HHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence 999999999999999887653 34555799999997322111 0111 112334454443 56777999998
Q ss_pred -cCHHHHHHHHHH
Q 041042 235 -INVNKILKFITA 246 (268)
Q Consensus 235 -~~i~~~f~~l~~ 246 (268)
.|+++.|+||.+
T Consensus 154 ~~g~~~~~~wl~~ 166 (167)
T cd04161 154 DPSIVEGLRWLLA 166 (167)
T ss_pred ccCHHHHHHHHhc
Confidence 899999999974
No 122
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=2.7e-26 Score=187.02 Aligned_cols=154 Identities=16% Similarity=0.158 Sum_probs=123.7
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
..+||+++|++|||||||++++.++.+. .+.+|++... ..+.+++ +.+++||++|++.+..++..+++++|++++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999998874 5777777543 4455554 568899999999999899999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHH----------------hC
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKA----------------LN 223 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~----------------~~ 223 (268)
|+|+++.++|+....|+..+.... .+.|++||+||+|+.. .+..++++++++. ..
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG-------AVSEEELRQALGLYGTTTGKGVSLKVSGIRP 165 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC-------CcCHHHHHHHhCcccccccccccccccCcee
Confidence 999999999999888888876542 3456679999999721 2234555555542 23
Q ss_pred CeEEEEcCCCCcCHHHHHHHHHHH
Q 041042 224 ATLFFSSATYNINVNKILKFITAK 247 (268)
Q Consensus 224 ~~~~~~Sa~~~~~i~~~f~~l~~~ 247 (268)
+.+++|||++|+|++++|++|.+.
T Consensus 166 ~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 166 IEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEEEEeEecCCCChHHHHHHHHhh
Confidence 568999999999999999999865
No 123
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=6.6e-27 Score=186.42 Aligned_cols=151 Identities=18% Similarity=0.212 Sum_probs=117.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcCC------CCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDE------KEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIA 158 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~ 158 (268)
+|+++|++|||||||++++.+.. +...+.+|++.++. .+.++ ...+++|||+|++.+..++..+++++|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 58999999999999999997642 23355677776664 34444 4678999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHH-------hCCeEEEE
Q 041042 159 ILFMFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKA-------LNATLFFS 229 (268)
Q Consensus 159 vilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 229 (268)
+++|+|+++.+++..+..|+..+.+.. .+.|.+||+||+|+... ...++...+.+. .+++++++
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA-------LSVEEIKEVFQDKAEEIGRRDCLVLPV 149 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC-------CCHHHHHHHhccccccccCCceEEEEe
Confidence 999999999999999998888876642 34566799999997321 122333333322 34689999
Q ss_pred cCCCCcCHHHHHHHHHH
Q 041042 230 SATYNINVNKILKFITA 246 (268)
Q Consensus 230 Sa~~~~~i~~~f~~l~~ 246 (268)
||++|.|++++|++|++
T Consensus 150 Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 150 SALEGTGVREGIEWLVE 166 (167)
T ss_pred eCCCCcCHHHHHHHHhc
Confidence 99999999999999875
No 124
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.94 E-value=2.7e-26 Score=181.29 Aligned_cols=150 Identities=19% Similarity=0.184 Sum_probs=118.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFD 164 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D 164 (268)
||+++|.+|||||||++++.+..+ ..+.+|++.... .+.++ .+.+.+||++|++.+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 799999999999999999999884 566777776553 33343 4679999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHH-----HHHhCCeEEEEcCCCCcCH
Q 041042 165 LTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAY-----AKALNATLFFSSATYNINV 237 (268)
Q Consensus 165 ~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i 237 (268)
+++++++..+..|+..+.... .+.|.++|+||+|+.. .. ..++..+. +....++++++||++|.|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 148 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPG---AL----SVSELIEKLGLEKILGRRWHIQPCSAVTGDGL 148 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcc---cc----CHHHHHHhhChhhccCCcEEEEEeeCCCCCCH
Confidence 999999999998888876642 3455579999999731 11 11222222 2234568999999999999
Q ss_pred HHHHHHHHH
Q 041042 238 NKILKFITA 246 (268)
Q Consensus 238 ~~~f~~l~~ 246 (268)
+++|++|..
T Consensus 149 ~~~~~~l~~ 157 (158)
T cd00878 149 DEGLDWLLQ 157 (158)
T ss_pred HHHHHHHhh
Confidence 999999875
No 125
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.93 E-value=2.4e-25 Score=174.81 Aligned_cols=155 Identities=17% Similarity=0.257 Sum_probs=119.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFD 164 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D 164 (268)
.|+++|.+|||||||++++.+.++...+.+|++.++.. +..++ +.+.+||++|++.+..++..+++.+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 37999999999999999999999999999999877642 33333 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHH-HHHHHHhCCeEEEEcCCCCcCHHHHH
Q 041042 165 LTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQA-RAYAKALNATLFFSSATYNINVNKIL 241 (268)
Q Consensus 165 ~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~~i~~~f 241 (268)
+++.+++.....|+..+.... .+.|.++|+||+|+.+ ........+.. ........++++++||++|.|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPG---ALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVL 153 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC---CcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHH
Confidence 999999998888877765432 3445579999999631 11111111110 01112234688999999999999999
Q ss_pred HHHHH
Q 041042 242 KFITA 246 (268)
Q Consensus 242 ~~l~~ 246 (268)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04159 154 DWLIK 158 (159)
T ss_pred HHHhh
Confidence 99875
No 126
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.93 E-value=5.9e-25 Score=182.97 Aligned_cols=170 Identities=25% Similarity=0.338 Sum_probs=136.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
.+||+++|++|||||||+++|.++.+...+.+|++..+........+..+++.+|||+|+++|+.++..|+.+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 49999999999999999999999999999999999888888877777789999999999999999999999999999999
Q ss_pred EeCCC-hhhHHHHHHHHHHHHHhCC-CCceEEEEeCCCCCCCCCccc-------hhchHHHHHHHHHHh---CCeEEEEc
Q 041042 163 FDLTS-RCTLKSVIRWYQQARKCNQ-TAIPIIIGTKFDDFIQLPIDL-------QWTIASQARAYAKAL---NATLFFSS 230 (268)
Q Consensus 163 ~D~~~-~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~Dl~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~S 230 (268)
||.++ ..+++....|...+....+ ..++++|+||+||........ ...........+... ...++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 99999 5566677799999988885 456679999999742211000 111222222222222 33489999
Q ss_pred CC--CCcCHHHHHHHHHHHHhcCc
Q 041042 231 AT--YNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 231 a~--~~~~i~~~f~~l~~~i~~~~ 252 (268)
++ ++.+|.++|..+...+.+..
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhh
Confidence 99 99999999999999887654
No 127
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=3.1e-25 Score=180.14 Aligned_cols=154 Identities=17% Similarity=0.207 Sum_probs=118.7
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
..+||+++|.+|||||||++++.++.+. .+.+|.+.+. ..+.++ .+.+.+||++|++.++.++..|++++|++|+
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 3589999999999999999999998764 4566666543 333444 3678899999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHH------------HhCCeEE
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAK------------ALNATLF 227 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 227 (268)
|+|+++++++.....|+..+.... .+.|.+||+||+|+... ...+++.+... .....++
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~-------~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~ 163 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA-------ASEDELRYALGLTNTTGSKGKVGVRPLEVF 163 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC-------CCHHHHHHHcCCCcccccccccCCceeEEE
Confidence 999999999999988888775432 34566799999997321 12233322221 0234589
Q ss_pred EEcCCCCcCHHHHHHHHHHH
Q 041042 228 FSSATYNINVNKILKFITAK 247 (268)
Q Consensus 228 ~~Sa~~~~~i~~~f~~l~~~ 247 (268)
+|||++|.|+++++++|.++
T Consensus 164 ~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 164 MCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EeecccCCChHHHHHHHHhh
Confidence 99999999999999999865
No 128
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=4.4e-25 Score=177.92 Aligned_cols=154 Identities=13% Similarity=0.196 Sum_probs=116.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcCC-------CCCCCCCC------cceeeEEEEEEE-----CCeEEEEEEEeCCCccccc
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDE-------KEQGGSPG------EGLNMMDKTLLV-----RGARISYSIWEVTGDAKAQ 146 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~-------~~~~~~~t------~~~~~~~~~~~~-----~~~~~~l~i~Dt~G~~~~~ 146 (268)
+|+++|+++||||||+++|++.. +...+.++ .|.++....+.. ++..+.+++|||+|++.|.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999998742 22233333 244555444333 6678899999999999999
Q ss_pred cchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCe-
Q 041042 147 DHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNAT- 225 (268)
Q Consensus 147 ~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~- 225 (268)
.++..+++++|++|+|||+++..+++....|..... .+.+.++|+||+|+. .. ...+...++++.++++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~~~iiiv~NK~Dl~----~~---~~~~~~~~~~~~~~~~~ 151 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---NNLEIIPVINKIDLP----SA---DPERVKQQIEDVLGLDP 151 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cCCCEEEEEECCCCC----cC---CHHHHHHHHHHHhCCCc
Confidence 999999999999999999999877777776654332 245567999999962 11 1123345666666764
Q ss_pred --EEEEcCCCCcCHHHHHHHHHHHH
Q 041042 226 --LFFSSATYNINVNKILKFITAKL 248 (268)
Q Consensus 226 --~~~~Sa~~~~~i~~~f~~l~~~i 248 (268)
++++||++|.|++++|++|.+.+
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhC
Confidence 89999999999999999998875
No 129
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=1.1e-25 Score=174.81 Aligned_cols=134 Identities=14% Similarity=0.121 Sum_probs=102.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcc-----ccccchhhhhcCCcEE
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA-----KAQDHLPVACKDSIAI 159 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----~~~~~~~~~~~~a~~v 159 (268)
||+++|++|||||||+++|.++.+ .+.+|++.++. + .+|||+|+. .|..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~-------~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYN-------D-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEEc-------C-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 899999999999999999998875 34555554432 1 579999972 3444444 48999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCC-eEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNA-TLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 238 (268)
|+|||+++..++.. ..|.+.+ ..|.|+|+||+|+. + .....+++.++++..+. +++++||++|.|++
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~-----~~p~ilv~NK~Dl~---~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 134 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF-----VKPVIGLVTKIDLA---E---ADVDIERAKELLETAGAEPIFEISSVDEQGLE 134 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc-----cCCeEEEEEeeccC---C---cccCHHHHHHHHHHcCCCcEEEEecCCCCCHH
Confidence 99999999999865 3454432 23667899999972 1 22335667788888776 79999999999999
Q ss_pred HHHHHHH
Q 041042 239 KILKFIT 245 (268)
Q Consensus 239 ~~f~~l~ 245 (268)
++|+++.
T Consensus 135 ~l~~~l~ 141 (142)
T TIGR02528 135 ALVDYLN 141 (142)
T ss_pred HHHHHHh
Confidence 9999874
No 130
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.93 E-value=1.6e-24 Score=165.47 Aligned_cols=164 Identities=19% Similarity=0.238 Sum_probs=132.7
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
..++++|.++|..|+||||++++|.+.. .+...||.|.+. +++.++ .+++++||.+||...++.|+.||..+|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~I--ktl~~~--~~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQI--KTLEYK--GYTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceee--EEEEec--ceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 4458999999999999999999998877 467788888554 555544 46699999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHH--hCCCCceEEEEeCCCCCCCCCccchhch-HHHHHHHHHHhCCeEEEEcCCCCcC
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARK--CNQTAIPIIIGTKFDDFIQLPIDLQWTI-ASQARAYAKALNATLFFSSATYNIN 236 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~--~~~~~~~ilvgnK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~~ 236 (268)
|.|+|.+|+..|++....+..+.. .-...+++|++||.|+...+..+ ... .-+..++++...++.+.|||.+|++
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~--~i~~~~~L~~l~ks~~~~l~~cs~~tge~ 165 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLE--EISKALDLEELAKSHHWRLVKCSAVTGED 165 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHH--HHHHhhCHHHhccccCceEEEEecccccc
Confidence 999999999999988866666533 22356788999999974333321 111 2445667788899999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 041042 237 VNKILKFITAKLFD 250 (268)
Q Consensus 237 i~~~f~~l~~~i~~ 250 (268)
+.+-++|++..+..
T Consensus 166 l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 166 LLEGIDWLCDDLMS 179 (185)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998876
No 131
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.93 E-value=1.7e-24 Score=172.60 Aligned_cols=156 Identities=13% Similarity=0.186 Sum_probs=107.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccc---------hhhhhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDH---------LPVACKD 155 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~---------~~~~~~~ 155 (268)
+|+++|.+|||||||+++|.+..+.....+....+.....+ ....+.+++|||+|+...... .......
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 79999999999999999999987643322211111211122 223477999999998431110 0011123
Q ss_pred CcEEEEEEeCCChhhH--HHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCC
Q 041042 156 SIAILFMFDLTSRCTL--KSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATY 233 (268)
Q Consensus 156 a~~vilv~D~~~~~s~--~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 233 (268)
+|++|+|+|+++..++ +....|++.+.....+.|+|+|+||+|+. . ..... +..++++..+.++++|||++
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~---~---~~~~~-~~~~~~~~~~~~~~~~Sa~~ 152 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLL---T---FEDLS-EIEEEEELEGEEVLKISTLT 152 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccC---c---hhhHH-HHHHhhhhccCceEEEEecc
Confidence 6899999999987654 66678888887665566668999999972 1 11111 25566666778999999999
Q ss_pred CcCHHHHHHHHHHHHh
Q 041042 234 NINVNKILKFITAKLF 249 (268)
Q Consensus 234 ~~~i~~~f~~l~~~i~ 249 (268)
|.|++++|+++.+.++
T Consensus 153 ~~gi~~l~~~l~~~~~ 168 (168)
T cd01897 153 EEGVDEVKNKACELLL 168 (168)
T ss_pred cCCHHHHHHHHHHHhC
Confidence 9999999999998763
No 132
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.93 E-value=9.8e-25 Score=175.78 Aligned_cols=156 Identities=19% Similarity=0.256 Sum_probs=122.9
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
...+||+++|..|+|||||++++..+.+. ...||+|.+. ..+.+++ +.+.+||.+|+..++.+|+.|+.++|++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~--~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNI--EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEE--EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc-ccCccccccc--ceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 55799999999999999999999987653 4778888664 4455554 56889999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHH------HhCCeEEEEcCC
Q 041042 161 FMFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAK------ALNATLFFSSAT 232 (268)
Q Consensus 161 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~ 232 (268)
+|+|.+|.+.+.+....+..+.... .+.|.+|++||+|+... ...+++..... ...+.++.|||+
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~-------~~~~~i~~~l~l~~l~~~~~~~v~~~sa~ 159 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA-------MSEEEIKEYLGLEKLKNKRPWSVFSCSAK 159 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS-------STHHHHHHHTTGGGTTSSSCEEEEEEBTT
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc-------chhhHHHhhhhhhhcccCCceEEEeeecc
Confidence 9999999999999988887776542 24444699999996322 12233333222 334568889999
Q ss_pred CCcCHHHHHHHHHHHH
Q 041042 233 YNINVNKILKFITAKL 248 (268)
Q Consensus 233 ~~~~i~~~f~~l~~~i 248 (268)
+|+|+.+.|+||.+.+
T Consensus 160 ~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 160 TGEGVDEGLEWLIEQI 175 (175)
T ss_dssp TTBTHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhcC
Confidence 9999999999999875
No 133
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=2e-24 Score=172.47 Aligned_cols=156 Identities=14% Similarity=0.132 Sum_probs=110.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcc----ccccchhhhhc---CCc
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA----KAQDHLPVACK---DSI 157 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----~~~~~~~~~~~---~a~ 157 (268)
.|+++|.+|||||||++++.+........+....+.....+.+++ ...+.+|||+|+. .+..+...+++ .+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 589999999999999999987654222212111121112233333 2468999999964 22334444444 599
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHHhCC---CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHH-hCCeEEEEcCC
Q 041042 158 AILFMFDLTSR-CTLKSVIRWYQQARKCNQ---TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKA-LNATLFFSSAT 232 (268)
Q Consensus 158 ~vilv~D~~~~-~s~~~~~~~~~~i~~~~~---~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~ 232 (268)
++++|+|+++. ++++.+..|++.+....+ ..|+++|+||+|+. + .....+....+... .+.+++++||+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~---~---~~~~~~~~~~~~~~~~~~~~~~~Sa~ 154 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL---D---EEELFELLKELLKELWGKPVFPISAL 154 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC---C---chhhHHHHHHHHhhCCCCCEEEEecC
Confidence 99999999999 899999999999887653 45558999999972 1 22234445555665 37889999999
Q ss_pred CCcCHHHHHHHHHHH
Q 041042 233 YNINVNKILKFITAK 247 (268)
Q Consensus 233 ~~~~i~~~f~~l~~~ 247 (268)
++.|++++|+++.+.
T Consensus 155 ~~~gi~~l~~~i~~~ 169 (170)
T cd01898 155 TGEGLDELLRKLAEL 169 (170)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999999865
No 134
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=2.3e-24 Score=189.47 Aligned_cols=206 Identities=15% Similarity=0.116 Sum_probs=139.6
Q ss_pred hhhhhccCCCCCCCcCCCCCCCCCCCCccccCCCCCCCCCCCCccCCCCCCCCCCceeE----EEEEEcCCCChHHHHHH
Q 041042 26 EKLLMCSVGKPIRYRMLPRSTVTSPSPSVLESGLVPGTTVRPSLCHSHRHLDADNLVAL----KISLLGDCHIGKTSFLE 101 (268)
Q Consensus 26 ~~~~~~s~g~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----ki~vlG~~~vGKSsLi~ 101 (268)
+++++|.+|.+++....+..+. ...|.....|.+. +...-..++ .|.|+|.||||||||++
T Consensus 112 ~~~~~a~gg~gg~gn~~f~~~~-~~~p~~~~~g~~g--------------~~~~~~lelk~~adVglVG~PNaGKSTLln 176 (335)
T PRK12299 112 QRFLVAKGGKGGLGNAHFKSST-NRAPRYATPGEPG--------------EERWLRLELKLLADVGLVGLPNAGKSTLIS 176 (335)
T ss_pred cEEEEecCCCCcCCchhhcccc-CCCCccccCCCCC--------------cEEEEEEEEcccCCEEEEcCCCCCHHHHHH
Confidence 6789999999998766554433 3444444433321 111122233 57799999999999999
Q ss_pred HHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccc----cccchhhh---hcCCcEEEEEEeCCChhhHHHH
Q 041042 102 KYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK----AQDHLPVA---CKDSIAILFMFDLTSRCTLKSV 174 (268)
Q Consensus 102 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~~~~---~~~a~~vilv~D~~~~~s~~~~ 174 (268)
++.+........+.+..+.....+.+. ....+.+||++|.-. ...+...| ++.++++|+|+|+++.++++.+
T Consensus 177 ~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~ 255 (335)
T PRK12299 177 AVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDY 255 (335)
T ss_pred HHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHH
Confidence 999865433322222222322334442 223578999999632 22344443 4579999999999998899999
Q ss_pred HHHHHHHHHhCC---CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHHhcC
Q 041042 175 IRWYQQARKCNQ---TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 175 ~~~~~~i~~~~~---~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~i~~~ 251 (268)
..|.+++..+.+ +.|.|||+||+|+. .. .....+..+.+++..+.+++++||++++|++++|++|.+.+.+.
T Consensus 256 ~~~~~EL~~~~~~L~~kp~IIV~NKiDL~---~~--~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 256 KTIRNELEKYSPELADKPRILVLNKIDLL---DE--EEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEEA 330 (335)
T ss_pred HHHHHHHHHhhhhcccCCeEEEEECcccC---Cc--hhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHhh
Confidence 999999988754 45668999999972 21 12223445555666778999999999999999999999887654
Q ss_pred c
Q 041042 252 P 252 (268)
Q Consensus 252 ~ 252 (268)
+
T Consensus 331 ~ 331 (335)
T PRK12299 331 R 331 (335)
T ss_pred h
Confidence 3
No 135
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.92 E-value=6e-24 Score=166.17 Aligned_cols=157 Identities=17% Similarity=0.267 Sum_probs=129.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
.+||+++|.+|+|||||++++.+..+...+.++++.++....+..++..+.+.+||++|++.+..++..+++.+++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999998778888888888877788888778899999999999999999999999999999
Q ss_pred EeCCCh-hhHHHHH-HHHHHHHHhCC-CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 163 FDLTSR-CTLKSVI-RWYQQARKCNQ-TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 163 ~D~~~~-~s~~~~~-~~~~~i~~~~~-~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
+|+... .++.... .|...+..... +.|.++|+||+|+. . ..........+......+++++||++|.|+.+
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~---~---~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~ 154 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLR---D---AKLKTHVAFLFAKLNGEPIIPLSAETGKNIDS 154 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCC---c---chhhHHHHHHHhhccCCceEEeecCCCCCHHH
Confidence 999888 7777766 77777776655 45557999999972 1 11223444444555567899999999999999
Q ss_pred HHHHHH
Q 041042 240 ILKFIT 245 (268)
Q Consensus 240 ~f~~l~ 245 (268)
+|++|-
T Consensus 155 ~~~~l~ 160 (161)
T TIGR00231 155 AFKIVE 160 (161)
T ss_pred HHHHhh
Confidence 999863
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=3.3e-24 Score=169.85 Aligned_cols=153 Identities=14% Similarity=0.127 Sum_probs=105.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC---CCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD---EKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
-|+++|++|||||||+++|.+. .+...+.++++.+.....+.+.+ ...+++|||+|+++|......+++++|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 5899999999999999999864 33333334334444334455542 3578999999999987777778899999999
Q ss_pred EEeCCC---hhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHH---hCCeEEEEcCCCCc
Q 041042 162 MFDLTS---RCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKA---LNATLFFSSATYNI 235 (268)
Q Consensus 162 v~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~ 235 (268)
|+|+++ .++++.+. .+... ...++++|+||+|+. .........++..++.+. .+.+++++||++|.
T Consensus 81 V~d~~~~~~~~~~~~~~----~~~~~-~~~~~ilv~NK~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (164)
T cd04171 81 VVAADEGIMPQTREHLE----ILELL-GIKRGLVVLTKADLV---DEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE 152 (164)
T ss_pred EEECCCCccHhHHHHHH----HHHHh-CCCcEEEEEECcccc---CHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence 999987 44444332 22222 223567999999972 211112234445555544 46889999999999
Q ss_pred CHHHHHHHHHH
Q 041042 236 NVNKILKFITA 246 (268)
Q Consensus 236 ~i~~~f~~l~~ 246 (268)
|++++|+.+.+
T Consensus 153 ~v~~l~~~l~~ 163 (164)
T cd04171 153 GIEELKEYLDE 163 (164)
T ss_pred CHHHHHHHHhh
Confidence 99999998764
No 137
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.92 E-value=9.8e-24 Score=185.26 Aligned_cols=205 Identities=15% Similarity=0.136 Sum_probs=137.1
Q ss_pred hhhhhccCCCCCCCcCCCCCCCCCCCCccccCCCCCCCCCCCCccCCCCCCCCCCceeEEEEEEcCCCChHHHHHHHHhc
Q 041042 26 EKLLMCSVGKPIRYRMLPRSTVTSPSPSVLESGLVPGTTVRPSLCHSHRHLDADNLVALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 26 ~~~~~~s~g~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
+++++|.+|.+++....+..+. ...|.....|.+.+.. .-.-+-.....|+++|.+|||||||++++.+
T Consensus 111 ~~~~~a~gg~gg~gn~~f~~~~-~~~p~~~~~g~~g~~~----------~~~lelk~~adV~lvG~pnaGKSTLl~~lt~ 179 (329)
T TIGR02729 111 QRFVVAKGGRGGLGNAHFKSST-NRAPRFATPGEPGEER----------WLRLELKLLADVGLVGLPNAGKSTLISAVSA 179 (329)
T ss_pred cEEEecCCCCCCCCcccccCcc-CCCCcccCCCCCCcEE----------EEEEEeeccccEEEEcCCCCCHHHHHHHHhc
Confidence 6788999999997766555443 3344433333321111 0001111124688999999999999999998
Q ss_pred CCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccc----cccchhhhh---cCCcEEEEEEeCCCh---hhHHHHH
Q 041042 106 DEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK----AQDHLPVAC---KDSIAILFMFDLTSR---CTLKSVI 175 (268)
Q Consensus 106 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~~~~~---~~a~~vilv~D~~~~---~s~~~~~ 175 (268)
........+.+........+.+++ ...+.+|||||... ...+...|+ +.++++++|+|+++. ++++.+.
T Consensus 180 ~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~ 258 (329)
T TIGR02729 180 AKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYE 258 (329)
T ss_pred CCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHH
Confidence 754322222112222223344443 35688999999743 223444554 469999999999987 7888999
Q ss_pred HHHHHHHHhCC---CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHH
Q 041042 176 RWYQQARKCNQ---TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248 (268)
Q Consensus 176 ~~~~~i~~~~~---~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~i 248 (268)
.|.+++..+.+ ..|.+||+||+|+. . .....+..+.+++..+.+++++||++++|++++|++|.+.+
T Consensus 259 ~l~~EL~~~~~~l~~kp~IIV~NK~DL~---~---~~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 259 IIRNELKKYSPELAEKPRIVVLNKIDLL---D---EEELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred HHHHHHHHhhhhhccCCEEEEEeCccCC---C---hHHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 99998887753 45668999999972 2 12234556667777788999999999999999999998764
No 138
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.92 E-value=1e-23 Score=169.05 Aligned_cols=150 Identities=17% Similarity=0.260 Sum_probs=115.5
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
..+||+++|.+|||||||++++.+..+. .+.+|.|.++ ..+..++ ..+.+||++|+..+...+..+++++|++++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 3699999999999999999999988763 4667777554 3444554 568899999999988888999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCC--------eEEEEcC
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNA--------TLFFSSA 231 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa 231 (268)
|+|+++..++.....|+..+.... ...|.++++||+|+. ... ...++.+..++ +++++||
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~---~~~-------~~~~i~~~l~~~~~~~~~~~~~~~Sa 157 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLA---TAA-------PAEEIAEALNLHDLRDRTWHIQACSA 157 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCc---cCC-------CHHHHHHHcCCcccCCCeEEEEEeEC
Confidence 999999999998887777665432 244557999999962 111 11222333332 4688999
Q ss_pred CCCcCHHHHHHHHHH
Q 041042 232 TYNINVNKILKFITA 246 (268)
Q Consensus 232 ~~~~~i~~~f~~l~~ 246 (268)
++|+|++++|++|++
T Consensus 158 ~~~~gi~~~~~~l~~ 172 (173)
T cd04155 158 KTGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCCHHHHHHHHhc
Confidence 999999999999975
No 139
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=6.2e-24 Score=166.27 Aligned_cols=165 Identities=18% Similarity=0.183 Sum_probs=127.0
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
...+++|+++|-.++||||+++++..+++... .||+|.+.. ++.+. .+.+.+||.+||++++.+|++||++.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE--~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE--TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee--EEEEc--ceEEEEEecCCCcccccchhhhccCCcEE
Confidence 34469999999999999999999999987655 999997654 34333 67899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCC--CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQ--TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINV 237 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 237 (268)
|+|+|.+|++.+.++++-+..+..... ..|.++.+||.|++..++.. ++...-...-.+.....+..|+|.+|+|+
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~--ei~~~L~l~~l~~~~w~iq~~~a~~G~GL 166 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAA--EITNKLGLHSLRSRNWHIQSTCAISGEGL 166 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHH--HHHhHhhhhccCCCCcEEeeccccccccH
Confidence 999999999999999987777766643 44446999999975444421 11111111111123344666999999999
Q ss_pred HHHHHHHHHHHhcC
Q 041042 238 NKILKFITAKLFDI 251 (268)
Q Consensus 238 ~~~f~~l~~~i~~~ 251 (268)
.|.++++.+.+...
T Consensus 167 ~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 167 YEGLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887653
No 140
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.90 E-value=5.3e-23 Score=169.54 Aligned_cols=154 Identities=14% Similarity=0.136 Sum_probs=110.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccc---------cccchhhhh
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK---------AQDHLPVAC 153 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------~~~~~~~~~ 153 (268)
.++|+|+|.+|||||||++++.+..+.....+....+.....+.+++. ..+.+|||+|... +.... ..+
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~ 118 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-EEV 118 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-HHH
Confidence 379999999999999999999998753332221122233334444443 2688999999732 11111 236
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC-CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCC
Q 041042 154 KDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQ-TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSAT 232 (268)
Q Consensus 154 ~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 232 (268)
..+|++++|+|+++..++..+..|.+.+..... +.++++|+||+|+. +.. ... .++...+.+++++||+
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~---~~~---~~~----~~~~~~~~~~~~~Sa~ 188 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLL---DDE---ELE----ERLEAGRPDAVFISAK 188 (204)
T ss_pred hcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccC---ChH---HHH----HHhhcCCCceEEEEcC
Confidence 789999999999999999888888887776654 34557999999972 211 111 4455567889999999
Q ss_pred CCcCHHHHHHHHHHHH
Q 041042 233 YNINVNKILKFITAKL 248 (268)
Q Consensus 233 ~~~~i~~~f~~l~~~i 248 (268)
+|.|++++|++|.+.+
T Consensus 189 ~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 189 TGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999998753
No 141
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.90 E-value=8.9e-23 Score=160.76 Aligned_cols=148 Identities=15% Similarity=0.148 Sum_probs=111.7
Q ss_pred EEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhhhc--CCcEE
Q 041042 88 LLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQD------HLPVACK--DSIAI 159 (268)
Q Consensus 88 vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------~~~~~~~--~a~~v 159 (268)
|+|.+|||||||++++.+..+.....++++.+.....+.+++ ..+.+|||+|++.+.. +...++. ++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999999876555566666666666777776 4688999999987764 3566665 99999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
|+|+|+++.++. ..|...+... +.|.|+|+||+|+. . ..........+++.++++++++||++|.|+++
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~~--~~~~iiv~NK~Dl~---~---~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~ 147 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLEL--GLPVVVALNMIDEA---E---KRGIKIDLDKLSELLGVPVVPTSARKGEGIDE 147 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHHc--CCCEEEEEehhhhc---c---cccchhhHHHHHHhhCCCeEEEEccCCCCHHH
Confidence 999999886543 2444444432 45668999999972 1 11223335577888899999999999999999
Q ss_pred HHHHHHHHH
Q 041042 240 ILKFITAKL 248 (268)
Q Consensus 240 ~f~~l~~~i 248 (268)
+|+.+.+.+
T Consensus 148 l~~~l~~~~ 156 (158)
T cd01879 148 LKDAIAELA 156 (158)
T ss_pred HHHHHHHHh
Confidence 999998763
No 142
>PRK15494 era GTPase Era; Provisional
Probab=99.90 E-value=1.5e-22 Score=178.90 Aligned_cols=170 Identities=16% Similarity=0.286 Sum_probs=123.1
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCC---CCCCCcceeeEEEEEEECCeEEEEEEEeCCCccc-cccchh-----
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQ---GGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK-AQDHLP----- 150 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~----- 150 (268)
+.+.+||+++|.+|||||||+|+|++..+.. ....| .+.....+..++. .+.+|||+|+.. +..+..
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tT--r~~~~~~~~~~~~--qi~~~DTpG~~~~~~~l~~~~~r~ 124 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTT--RSIITGIITLKDT--QVILYDTPGIFEPKGSLEKAMVRC 124 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCc--cCcEEEEEEeCCe--EEEEEECCCcCCCcccHHHHHHHH
Confidence 3556899999999999999999999987642 12222 2333445555554 578999999843 333222
Q ss_pred --hhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhC--Ce
Q 041042 151 --VACKDSIAILFMFDLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALN--AT 225 (268)
Q Consensus 151 --~~~~~a~~vilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~ 225 (268)
.+++++|++++|+|.++ +|.... .|++.+... +.++|+|+||+|+. . . ...++.+++...+ ..
T Consensus 125 ~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~----~--~--~~~~~~~~l~~~~~~~~ 192 (339)
T PRK15494 125 AWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIE----S--K--YLNDIKAFLTENHPDSL 192 (339)
T ss_pred HHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCc----c--c--cHHHHHHHHHhcCCCcE
Confidence 34779999999999754 555554 455555443 45678999999972 1 1 1344555555544 67
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHHhcCccchhcccCCCCCC
Q 041042 226 LFFSSATYNINVNKILKFITAKLFDIPWTLERNLTIGEPI 265 (268)
Q Consensus 226 ~~~~Sa~~~~~i~~~f~~l~~~i~~~~~~~~~~~~~~~~i 265 (268)
++++||++|.|++++|++|.+.+.+.++..+.+..++.+.
T Consensus 193 i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~ 232 (339)
T PRK15494 193 LFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPM 232 (339)
T ss_pred EEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCH
Confidence 9999999999999999999999999999999988887753
No 143
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.90 E-value=5.1e-23 Score=168.45 Aligned_cols=150 Identities=13% Similarity=0.162 Sum_probs=109.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc--CCCCCCC------------CCCcceeeEEEEEEECCeEEEEEEEeCCCccccccch
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG--DEKEQGG------------SPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHL 149 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 149 (268)
-+|+++|.++||||||+++|+. +.|...+ ..+.|.++..+...++.+.+.+++|||+|+++|..+.
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3899999999999999999987 4554433 2345666666666666677889999999999999999
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHH-------Hh
Q 041042 150 PVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAK-------AL 222 (268)
Q Consensus 150 ~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~ 222 (268)
..+++++|++++|||+++. .+.....|+..+.. .+.|+++|+||+|+. ........+++.++.. ..
T Consensus 83 ~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE--LGLKPIVVINKIDRP----DARPEEVVDEVFDLFIELGATEEQL 155 (194)
T ss_pred HHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH--cCCCEEEEEECCCCC----CCCHHHHHHHHHHHHHHhCCccccC
Confidence 9999999999999999874 23333444544433 245668999999972 2222233455555553 33
Q ss_pred CCeEEEEcCCCCcCHHHH
Q 041042 223 NATLFFSSATYNINVNKI 240 (268)
Q Consensus 223 ~~~~~~~Sa~~~~~i~~~ 240 (268)
+++++++||++|.|+.+.
T Consensus 156 ~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 156 DFPVLYASAKNGWASLNL 173 (194)
T ss_pred ccCEEEeehhcccccccc
Confidence 788999999999887443
No 144
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=2.1e-22 Score=181.39 Aligned_cols=207 Identities=14% Similarity=0.154 Sum_probs=138.2
Q ss_pred hhhhhccCCCCCCCcCCCCCCCCCCCCccccCCCCCCCCCCCCccCCCCCCCCCCceeEEEEEEcCCCChHHHHHHHHhc
Q 041042 26 EKLLMCSVGKPIRYRMLPRSTVTSPSPSVLESGLVPGTTVRPSLCHSHRHLDADNLVALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 26 ~~~~~~s~g~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
+++++|.+|.+++....+..+. ..+|.....+.+.+.. .-.-+-.....|+++|.+|||||||++++++
T Consensus 112 ~~~~va~GG~gG~gn~~F~~s~-~~~p~~~~~G~~ge~~----------~~~lelk~~adVglVG~pNaGKSTLLn~Lt~ 180 (424)
T PRK12297 112 QEVVVAKGGRGGRGNAHFATST-NQAPRIAENGEPGEER----------ELRLELKLLADVGLVGFPNVGKSTLLSVVSN 180 (424)
T ss_pred cEEEEECCCCCCcCchhhcCCC-CCCCCcCCCCCCCeEe----------EEEEeecccCcEEEEcCCCCCHHHHHHHHHc
Confidence 6789999999998766555444 3344443333321111 0011111123688999999999999999998
Q ss_pred CCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccc----cccchhhhh---cCCcEEEEEEeCCCh---hhHHHHH
Q 041042 106 DEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK----AQDHLPVAC---KDSIAILFMFDLTSR---CTLKSVI 175 (268)
Q Consensus 106 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~~~~~---~~a~~vilv~D~~~~---~s~~~~~ 175 (268)
.+......+.+..+.....+.+++ ...+.+||+||... ...+...|+ +.++++|+|+|+++. ++++++.
T Consensus 181 ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~ 259 (424)
T PRK12297 181 AKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYE 259 (424)
T ss_pred CCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHH
Confidence 764322222112222222333331 34588999999632 233445554 459999999999865 6788888
Q ss_pred HHHHHHHHhCC---CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 176 RWYQQARKCNQ---TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 176 ~~~~~i~~~~~---~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
.|.+++..+.+ ..|.|||+||+|| +. ..+....+++..+.+++++||+++.|+++++++|.+.+.+.+
T Consensus 260 ~i~~EL~~y~~~L~~kP~IVV~NK~DL----~~-----~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 260 KINKELKLYNPRLLERPQIVVANKMDL----PE-----AEENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred HHHHHHhhhchhccCCcEEEEEeCCCC----cC-----CHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 99999988754 4566899999996 11 124456677777788999999999999999999999887765
Q ss_pred c
Q 041042 253 W 253 (268)
Q Consensus 253 ~ 253 (268)
.
T Consensus 331 ~ 331 (424)
T PRK12297 331 E 331 (424)
T ss_pred c
Confidence 4
No 145
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=9.1e-24 Score=165.08 Aligned_cols=165 Identities=22% Similarity=0.351 Sum_probs=146.2
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
...+|++++|+.|.|||+++++...++|...+.+|+|+....-...-+...+++..|||+|+|.+..+...||-.+.+.|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 34799999999999999999999999999999999999887665555556799999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 161 FMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 161 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
++||++.+-++.++.+|...+.+.+.+.|++++|||.|. ..+.+....-.+-+..++.|+++||+++.|.+.-
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi-------~~r~~k~k~v~~~rkknl~y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDI-------KARKVKAKPVSFHRKKNLQYYEISAKSNYNFERP 160 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceec-------cccccccccceeeecccceeEEeecccccccccc
Confidence 999999999999999999999999888777899999994 2222344455677788999999999999999999
Q ss_pred HHHHHHHHhcCc
Q 041042 241 LKFITAKLFDIP 252 (268)
Q Consensus 241 f~~l~~~i~~~~ 252 (268)
|-++++.+...+
T Consensus 161 Fl~LarKl~G~p 172 (216)
T KOG0096|consen 161 FLWLARKLTGDP 172 (216)
T ss_pred hHHHhhhhcCCC
Confidence 999999988776
No 146
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.90 E-value=1.1e-25 Score=175.29 Aligned_cols=167 Identities=20% Similarity=0.265 Sum_probs=144.7
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCe-EEEEEEEeCCCccccccchhhhhcCCcE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGA-RISYSIWEVTGDAKAQDHLPVACKDSIA 158 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~a~~ 158 (268)
..+.+|+.|+|+-|||||+++++++...|...|..|+|++|..+....+.+ .+++++||.+||++|..+...||+.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 355799999999999999999999999999999999999998888877654 4789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC----CCC-ceEEEEeCCCCCCCCCccchhch--HHHHHHHHHHhCC-eEEEEc
Q 041042 159 ILFMFDLTSRCTLKSVIRWYQQARKCN----QTA-IPIIIGTKFDDFIQLPIDLQWTI--ASQARAYAKALNA-TLFFSS 230 (268)
Q Consensus 159 vilv~D~~~~~s~~~~~~~~~~i~~~~----~~~-~~ilvgnK~Dl~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~S 230 (268)
..+|||+++.-+|+.+..|.+++.... ... |.|+.+||||+ +..... .....++++++|+ ..+++|
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~------e~~a~~~~~~~~d~f~kengf~gwtets 175 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQ------EKSAKNEATRQFDNFKKENGFEGWTETS 175 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhcc------ChHhhhhhHHHHHHHHhccCccceeeec
Confidence 999999999999999999999987652 122 23688999996 222222 4678889999997 489999
Q ss_pred CCCCcCHHHHHHHHHHHHhcCc
Q 041042 231 ATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 231 a~~~~~i~~~f~~l~~~i~~~~ 252 (268)
+|.+.|++|+-..+++.++-+.
T Consensus 176 ~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 176 AKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred cccccChhHHHHHHHHHHHhhc
Confidence 9999999999999999888776
No 147
>PRK04213 GTP-binding protein; Provisional
Probab=99.90 E-value=5e-23 Score=169.27 Aligned_cols=152 Identities=18% Similarity=0.291 Sum_probs=104.3
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC-----------ccccccchh
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG-----------DAKAQDHLP 150 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G-----------~~~~~~~~~ 150 (268)
..+||+++|.+|||||||+++|.+..+...+.+++ ++....+.+. .+.+|||+| ++.++.++.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGV--TRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCce--eeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 35899999999999999999999988766566643 4433444333 488999999 567777777
Q ss_pred hhhc-C---CcEEEEEEeCCChhhHHHHHHH------------HHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHH
Q 041042 151 VACK-D---SIAILFMFDLTSRCTLKSVIRW------------YQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQ 214 (268)
Q Consensus 151 ~~~~-~---a~~vilv~D~~~~~s~~~~~~~------------~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~ 214 (268)
.|++ . ++++++|+|.++...+ ...| +..+.. .+.|++||+||+|+. .. . .+.
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~---~~---~--~~~ 149 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEI--IERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKI---KN---R--DEV 149 (201)
T ss_pred HHHHhhhhhheEEEEEEeCcccccc--ccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECcccc---Cc---H--HHH
Confidence 7765 3 4677777776543211 0122 222222 245668999999962 11 1 234
Q ss_pred HHHHHHHhCC---------eEEEEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 215 ARAYAKALNA---------TLFFSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 215 ~~~~~~~~~~---------~~~~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
..++++.+++ +++++||++| |++++|++|.+.+.+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 150 LDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred HHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 5566666665 4799999999 99999999998875543
No 148
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.89 E-value=3e-22 Score=159.40 Aligned_cols=158 Identities=11% Similarity=0.064 Sum_probs=108.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVR-GARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
.|+++|.+|||||||+++|..+.+.....+++..++....+..+ +....+.+|||+|++.|..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999988766544444434333334333 23567899999999999988888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHH------HhCCeEEEEcCCCCcCH
Q 041042 164 DLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAK------ALNATLFFSSATYNINV 237 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~i 237 (268)
|+++....+... .+..+.. .+.|+++|+||+|+. ........+....+.. ...++++++||++|.|+
T Consensus 82 d~~~~~~~~~~~-~~~~~~~--~~~p~ivv~NK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (168)
T cd01887 82 AADDGVMPQTIE-AIKLAKA--ANVPFIVALNKIDKP----NANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGI 154 (168)
T ss_pred ECCCCccHHHHH-HHHHHHH--cCCCEEEEEEceecc----cccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCH
Confidence 998843222111 1222322 245668999999972 1111111222222221 12468999999999999
Q ss_pred HHHHHHHHHHHh
Q 041042 238 NKILKFITAKLF 249 (268)
Q Consensus 238 ~~~f~~l~~~i~ 249 (268)
+++|++|.+...
T Consensus 155 ~~l~~~l~~~~~ 166 (168)
T cd01887 155 DDLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHHhhh
Confidence 999999987654
No 149
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.89 E-value=1.1e-22 Score=153.08 Aligned_cols=114 Identities=25% Similarity=0.462 Sum_probs=91.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCC--CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKE--QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
||+|+|++|||||||+++|.+..+. ..+.++.+.++......+......+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 8999999999999999999998875 22333444555555667777777799999999999988888889999999999
Q ss_pred EeCCChhhHHHHH---HHHHHHHHhCCCCceEEEEeCCC
Q 041042 163 FDLTSRCTLKSVI---RWYQQARKCNQTAIPIIIGTKFD 198 (268)
Q Consensus 163 ~D~~~~~s~~~~~---~~~~~i~~~~~~~~~ilvgnK~D 198 (268)
||+++.+||+.+. .|+..+.....+.|.||||||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 9999999999875 56777777666766689999998
No 150
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.89 E-value=6.3e-22 Score=170.10 Aligned_cols=167 Identities=15% Similarity=0.158 Sum_probs=119.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCC--CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccc-c-------chhhhhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKE--QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQ-D-------HLPVACK 154 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-~-------~~~~~~~ 154 (268)
+|+++|.+|||||||+|+|++..+. .....|+.. .. ..+...+ ...+.+|||||..... . ....+++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~-~i-~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRN-RI-SGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccC-cE-EEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 6899999999999999999998753 223334332 21 2222222 2458899999975421 1 1245678
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCC-eEEEEcCCC
Q 041042 155 DSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNA-TLFFSSATY 233 (268)
Q Consensus 155 ~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 233 (268)
++|++++|+|+++..+++ ..+++.+.. .+.|.++|+||+|+ . ......+....++...+. +++++||++
T Consensus 79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~--~~~p~ilV~NK~Dl---~---~~~~~~~~~~~~~~~~~~~~v~~iSA~~ 148 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG--EFVLTKLQN--LKRPVVLTRNKLDN---K---FKDKLLPLIDKYAILEDFKDIVPISALT 148 (270)
T ss_pred hCCEEEEEEECCCCCchH--HHHHHHHHh--cCCCEEEEEECeeC---C---CHHHHHHHHHHHHhhcCCCceEEEecCC
Confidence 999999999999877764 444444443 24556899999997 2 122334455566666554 789999999
Q ss_pred CcCHHHHHHHHHHHHhcCccchhcccCCCCC
Q 041042 234 NINVNKILKFITAKLFDIPWTLERNLTIGEP 264 (268)
Q Consensus 234 ~~~i~~~f~~l~~~i~~~~~~~~~~~~~~~~ 264 (268)
|.|++++++.+.+.+.+.++..+.+..++.+
T Consensus 149 g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~ 179 (270)
T TIGR00436 149 GDNTSFLAAFIEVHLPEGPFRYPEDYVTDQP 179 (270)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCcccCCCC
Confidence 9999999999999999999888887777665
No 151
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.89 E-value=1.8e-23 Score=156.93 Aligned_cols=161 Identities=19% Similarity=0.265 Sum_probs=126.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
++.+.++|..++|||||++....+.+.....||+|.+.+ .+....+.+.+||.+||.+|+++|..|+++++++++|
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 588999999999999999999999999999999997765 4556778899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhC-CCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 163 FDLTSRCTLKSVIRWYQQARKCN-QTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
+|++|++.++..+.-++.+.... -..+| +|.|||.|+...+.. ...+......-.....+.+|.+||++..||+.+
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~--~~li~rmgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSK--IALIERMGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccH--HHHHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence 99999998888776666654443 24455 589999997544433 111111111112233456899999999999999
Q ss_pred HHHHHHHHh
Q 041042 241 LKFITAKLF 249 (268)
Q Consensus 241 f~~l~~~i~ 249 (268)
.+||++...
T Consensus 174 ~~Wli~hsk 182 (186)
T KOG0075|consen 174 LDWLIEHSK 182 (186)
T ss_pred HHHHHHHhh
Confidence 999987643
No 152
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.89 E-value=8.1e-22 Score=148.99 Aligned_cols=166 Identities=15% Similarity=0.140 Sum_probs=136.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCC--CCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccc-ccchhhhhcCCcEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDE--KEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKA-QDHLPVACKDSIAI 159 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-~~~~~~~~~~a~~v 159 (268)
..||+++|..+||||+++.+++.+. ....+.+|+...|....-+-+|..-.+.++||+|-..+ ..+-++|+.-+|++
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDaf 88 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAF 88 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceE
Confidence 4899999999999999999987765 34557778765544333334566778999999998777 67889999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCC-C-CceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQ-T-AIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINV 237 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~-~-~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 237 (268)
++|||..|++||+.+.....+|.++.. + .|++|+|||+|+. +..++..+-++.||+.-.+..++++|+....+
T Consensus 89 VLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~-----~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL 163 (198)
T KOG3883|consen 89 VLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA-----EPREVDMDVAQIWAKREKVKLWEVTAMDRPSL 163 (198)
T ss_pred EEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc-----cchhcCHHHHHHHHhhhheeEEEEEeccchhh
Confidence 999999999999999877777776643 3 3446899999972 34556688999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcc
Q 041042 238 NKILKFITAKLFDIPW 253 (268)
Q Consensus 238 ~~~f~~l~~~i~~~~~ 253 (268)
-|.|..++..+.+...
T Consensus 164 ~epf~~l~~rl~~pqs 179 (198)
T KOG3883|consen 164 YEPFTYLASRLHQPQS 179 (198)
T ss_pred hhHHHHHHHhccCCcc
Confidence 9999999999887753
No 153
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=8.9e-22 Score=176.29 Aligned_cols=221 Identities=15% Similarity=0.134 Sum_probs=144.4
Q ss_pred hhhhhccCCCCCCCcCCCCCCCCCCCCccccCCCCCCCCCCCCccCCCCCCCCCCceeEEEEEEcCCCChHHHHHHHHhc
Q 041042 26 EKLLMCSVGKPIRYRMLPRSTVTSPSPSVLESGLVPGTTVRPSLCHSHRHLDADNLVALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 26 ~~~~~~s~g~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
+++++|.+|.+++....+..+. ...|.....+.+.+.. .-.-+-.....|.|+|.||||||||+|++.+
T Consensus 113 ~~~~~a~GG~gG~gn~~f~~~~-~~~p~~~~~g~~g~~~----------~~~lelk~iadValVG~PNaGKSTLln~Lt~ 181 (390)
T PRK12298 113 QRLLVAKGGWHGLGNTRFKSSV-NRAPRQKTPGTPGEER----------ELKLELKLLADVGLLGLPNAGKSTFIRAVSA 181 (390)
T ss_pred cEEEEecCCCCccchhhhccCc-cCCCcccCCCCCCceE----------EEEEeeeccccEEEEcCCCCCHHHHHHHHhC
Confidence 6789999999998766554443 2334333333321111 0000011122588999999999999999998
Q ss_pred CCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccccc----chh---hhhcCCcEEEEEEeCC---ChhhHHHHH
Q 041042 106 DEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQD----HLP---VACKDSIAILFMFDLT---SRCTLKSVI 175 (268)
Q Consensus 106 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~~---~~~~~a~~vilv~D~~---~~~s~~~~~ 175 (268)
.+......|.+........+..++ ...+.++||||...-.. +.. ..++.++++++|+|++ +.+.++.+.
T Consensus 182 ~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~ 260 (390)
T PRK12298 182 AKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENAR 260 (390)
T ss_pred CcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHH
Confidence 764333333222222223333332 23478999999643211 122 2478899999999998 566788888
Q ss_pred HHHHHHHHhCC---CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhC--CeEEEEcCCCCcCHHHHHHHHHHHHhc
Q 041042 176 RWYQQARKCNQ---TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALN--ATLFFSSATYNINVNKILKFITAKLFD 250 (268)
Q Consensus 176 ~~~~~i~~~~~---~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~f~~l~~~i~~ 250 (268)
.|++++..+.. ..|.|||+||+|+. . .....+.+..+.+..+ .+++.+||+++.|++++++.|.+.+.+
T Consensus 261 ~l~~eL~~~~~~L~~kP~IlVlNKiDl~---~---~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 261 IIINELEKYSPKLAEKPRWLVFNKIDLL---D---EEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred HHHHHHHhhhhhhcCCCEEEEEeCCccC---C---hHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 89988887653 45668999999972 1 2223455556666554 468999999999999999999999988
Q ss_pred CccchhcccCCCCC
Q 041042 251 IPWTLERNLTIGEP 264 (268)
Q Consensus 251 ~~~~~~~~~~~~~~ 264 (268)
.++..+.+...+++
T Consensus 335 ~~~~~~~~~~td~~ 348 (390)
T PRK12298 335 NPREEAEEAEAPEK 348 (390)
T ss_pred CcccCCcccccCcc
Confidence 88776666665544
No 154
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=4.8e-22 Score=183.29 Aligned_cols=163 Identities=15% Similarity=0.174 Sum_probs=117.5
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcc----------ccccch-
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEK-EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA----------KAQDHL- 149 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~- 149 (268)
..+||+++|.+|||||||+++|++..+ .....++++.+.....+.+++.. +.+|||+|.. .|..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 358999999999999999999999864 23455556667666777777766 4689999953 333332
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHH-HHHHHhCCeEEE
Q 041042 150 PVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQAR-AYAKALNATLFF 228 (268)
Q Consensus 150 ~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 228 (268)
..+++++|++|+|||+++..+++.+. ++..+.. .+.+.|||+||+||. .........+++. .+.....+++++
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~---~~~~~~~~~~~i~~~l~~~~~~~~~~ 361 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLV---DEDRRYYLEREIDRELAQVPWAPRVN 361 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccC---ChhHHHHHHHHHHHhcccCCCCCEEE
Confidence 34678999999999999998888764 4444443 345668999999972 2222222223332 233334578999
Q ss_pred EcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 229 SSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 229 ~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
+||++|.||+++|+.+.+.+.+..
T Consensus 362 ~SAk~g~gv~~lf~~i~~~~~~~~ 385 (472)
T PRK03003 362 ISAKTGRAVDKLVPALETALESWD 385 (472)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999998775444
No 155
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.88 E-value=1.7e-21 Score=150.57 Aligned_cols=153 Identities=24% Similarity=0.389 Sum_probs=119.8
Q ss_pred EEcCCCChHHHHHHHHhcCCC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCC
Q 041042 88 LLGDCHIGKTSFLEKYVGDEK-EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLT 166 (268)
Q Consensus 88 vlG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~ 166 (268)
++|.+|+|||||++++.+... .....+|. .++........+....+.+||++|+..+......+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999999876 45556665 7777777777777889999999999988888888999999999999999
Q ss_pred ChhhHHHHHHHH--HHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHH
Q 041042 167 SRCTLKSVIRWY--QQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFI 244 (268)
Q Consensus 167 ~~~s~~~~~~~~--~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l 244 (268)
+..++..+..|. ..........+.++|+||+|+. ... ...............+.+++++|++++.|+++++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~---~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 155 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLP---EER-VVSEEELAEQLAKELGVPYFETSAKTGENVEELFEEL 155 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccc---ccc-chHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHH
Confidence 999999998873 2223334455668999999962 111 1111112445566678899999999999999999997
Q ss_pred H
Q 041042 245 T 245 (268)
Q Consensus 245 ~ 245 (268)
.
T Consensus 156 ~ 156 (157)
T cd00882 156 A 156 (157)
T ss_pred h
Confidence 5
No 156
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=1.4e-21 Score=178.16 Aligned_cols=208 Identities=13% Similarity=0.067 Sum_probs=134.9
Q ss_pred hhhhhccCCCCCCCcCCCCCCCCCCCCccccCCCCCCCCCCCCccCCCCCCCCCCceeEEEEEEcCCCChHHHHHHHHhc
Q 041042 26 EKLLMCSVGKPIRYRMLPRSTVTSPSPSVLESGLVPGTTVRPSLCHSHRHLDADNLVALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 26 ~~~~~~s~g~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
+++++|.+|.+++......++. ..+|.....|.+.+.. .-.-+-....+|+|+|.||||||||+++|.+
T Consensus 113 ~~~~~a~GG~GG~Gn~~f~~~~-~~~p~~~~~G~~Ge~~----------~~~leLk~~adV~LVG~PNAGKSTLln~Ls~ 181 (500)
T PRK12296 113 TRFVAAAGGRGGLGNAALASKA-RKAPGFALLGEPGEER----------DLVLELKSVADVGLVGFPSAGKSSLISALSA 181 (500)
T ss_pred CEEEEEccCCCcCCCcccCCcc-CCCCccccCCCCCceE----------EEEEEecccceEEEEEcCCCCHHHHHHHHhc
Confidence 6788999999997765554444 3455555544432221 1011111124788999999999999999998
Q ss_pred CCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccc----cccchhh---hhcCCcEEEEEEeCCC----hhhHHHH
Q 041042 106 DEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK----AQDHLPV---ACKDSIAILFMFDLTS----RCTLKSV 174 (268)
Q Consensus 106 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~~~---~~~~a~~vilv~D~~~----~~s~~~~ 174 (268)
.+......+.+........+.+.+ ..+.+|||+|... ...+... +++.++++|+|+|+++ ++.++++
T Consensus 182 akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~ 259 (500)
T PRK12296 182 AKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDI 259 (500)
T ss_pred CCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhH
Confidence 764332223222233333444444 4688999999532 1222222 3577999999999986 3466667
Q ss_pred HHHHHHHHHhCC------------CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHH
Q 041042 175 IRWYQQARKCNQ------------TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILK 242 (268)
Q Consensus 175 ~~~~~~i~~~~~------------~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~ 242 (268)
..|.+++..+.. ..|.|||+||+|+ ++ .....+.........+++++++||+++.|++++++
T Consensus 260 ~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL----~d--a~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~ 333 (500)
T PRK12296 260 DALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDV----PD--ARELAEFVRPELEARGWPVFEVSAASREGLRELSF 333 (500)
T ss_pred HHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccc----hh--hHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 777777766542 4566899999996 22 12223333334455688999999999999999999
Q ss_pred HHHHHHhcCc
Q 041042 243 FITAKLFDIP 252 (268)
Q Consensus 243 ~l~~~i~~~~ 252 (268)
+|.+.+...+
T Consensus 334 ~L~ell~~~r 343 (500)
T PRK12296 334 ALAELVEEAR 343 (500)
T ss_pred HHHHHHHhhh
Confidence 9998887655
No 157
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.87 E-value=3e-21 Score=175.70 Aligned_cols=152 Identities=15% Similarity=0.225 Sum_probs=115.9
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhhh
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEK-EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDH--------LPVA 152 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~ 152 (268)
..+||+++|.+|||||||+|+|++... .....++++.++....+.+++.. +++|||+|+..+... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL--IKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE--EEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 358999999999999999999998753 12333445567777777787755 689999998665432 2467
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCC
Q 041042 153 CKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSAT 232 (268)
Q Consensus 153 ~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 232 (268)
++++|++++|||+++..+++.. |+..+.. .+.|.|+|+||+|+. .. +...+++.++.+++++||+
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~----~~-------~~~~~~~~~~~~~~~vSak 344 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLK----IN-------SLEFFVSSKVLNSSNLSAK 344 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCC----Cc-------chhhhhhhcCCceEEEEEe
Confidence 8999999999999999888775 7766643 245668999999972 11 1234567778899999999
Q ss_pred CCcCHHHHHHHHHHHHhcC
Q 041042 233 YNINVNKILKFITAKLFDI 251 (268)
Q Consensus 233 ~~~~i~~~f~~l~~~i~~~ 251 (268)
+ .||+++|+.+.+.+.+.
T Consensus 345 ~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 345 Q-LKIKALVDLLTQKINAF 362 (442)
T ss_pred c-CCHHHHHHHHHHHHHHH
Confidence 8 69999999998887654
No 158
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.87 E-value=2.8e-21 Score=171.15 Aligned_cols=152 Identities=12% Similarity=0.107 Sum_probs=108.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcc---------ccccchhhhh
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA---------KAQDHLPVAC 153 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 153 (268)
.++|+++|.+|||||||+|+|++..+.....+....+.....+.+++. ..+.+|||+|.. .|.... ..+
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 489999999999999999999998754333322234555566776432 368899999972 232222 247
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC-CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCC
Q 041042 154 KDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQ-TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSAT 232 (268)
Q Consensus 154 ~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 232 (268)
.+||++++|+|++++.+++.+..|...+..... +.|.|+|+||+|+. +. . +...+. ....+++++||+
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~---~~---~----~v~~~~-~~~~~~i~iSAk 335 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL---DE---P----RIERLE-EGYPEAVFVSAK 335 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC---Ch---H----hHHHHH-hCCCCEEEEEcc
Confidence 899999999999999988888777776666543 45558999999972 11 1 111111 123468999999
Q ss_pred CCcCHHHHHHHHHHH
Q 041042 233 YNINVNKILKFITAK 247 (268)
Q Consensus 233 ~~~~i~~~f~~l~~~ 247 (268)
+|.|++++++.|.+.
T Consensus 336 tg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 336 TGEGLDLLLEAIAER 350 (351)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999998764
No 159
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.87 E-value=4.4e-21 Score=156.76 Aligned_cols=161 Identities=13% Similarity=0.054 Sum_probs=103.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC----CCCCCC-----CCCcceeeEEEEEE----------ECCeEEEEEEEeCCCccc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD----EKEQGG-----SPGEGLNMMDKTLL----------VRGARISYSIWEVTGDAK 144 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~----~~~~~~-----~~t~~~~~~~~~~~----------~~~~~~~l~i~Dt~G~~~ 144 (268)
++|+++|.+|+|||||+++|++. .+.... ..|++..+....+. ..+....+++|||+|+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 48999999999999999999872 121111 13444444333332 123467899999999876
Q ss_pred cccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHH-H---
Q 041042 145 AQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYA-K--- 220 (268)
Q Consensus 145 ~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~-~--- 220 (268)
+..........+|++++|+|+++..+......|. .... . +.++++|+||+|+ ..........+++.+.. +
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~~~-~-~~~~iiv~NK~Dl---~~~~~~~~~~~~~~~~l~~~~~ 154 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IGEI-L-CKKLIVVLNKIDL---IPEEERERKIEKMKKKLQKTLE 154 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HHHH-c-CCCEEEEEECccc---CCHHHHHHHHHHHHHHHHHHHH
Confidence 5333333346789999999998755444333332 1111 1 3466799999997 22222222233333221 1
Q ss_pred ---HhCCeEEEEcCCCCcCHHHHHHHHHHHHhc
Q 041042 221 ---ALNATLFFSSATYNINVNKILKFITAKLFD 250 (268)
Q Consensus 221 ---~~~~~~~~~Sa~~~~~i~~~f~~l~~~i~~ 250 (268)
..+++++++||++|.|++++++++..++.-
T Consensus 155 ~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 155 KTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred hcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 236789999999999999999999988754
No 160
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.87 E-value=5.7e-21 Score=154.73 Aligned_cols=159 Identities=14% Similarity=0.117 Sum_probs=111.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCc--------------ceeeEEEEEEECCeEEEEEEEeCCCccccccchh
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGE--------------GLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLP 150 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 150 (268)
+|+++|.+|+|||||++++.+.........+. +.........++.....+.+|||+|+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 48999999999999999999887654432211 1111111112222346789999999999888888
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHH---------
Q 041042 151 VACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKA--------- 221 (268)
Q Consensus 151 ~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~--------- 221 (268)
.+++.+|++++|+|+++..+... ..++..+.. .+.++++|+||+|+ ..++......+++++..+.
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~~i~iv~nK~D~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE--GGLPIIVAINKIDR---VGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH--CCCCeEEEEECCCC---cchhcHHHHHHHHHHHHccccccchhhh
Confidence 99999999999999987665443 334444443 35566799999997 3222222334445444443
Q ss_pred -----hCCeEEEEcCCCCcCHHHHHHHHHHHHh
Q 041042 222 -----LNATLFFSSATYNINVNKILKFITAKLF 249 (268)
Q Consensus 222 -----~~~~~~~~Sa~~~~~i~~~f~~l~~~i~ 249 (268)
...+++++||++|.|++++|+++.+.+.
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 3578999999999999999999998863
No 161
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.87 E-value=1.6e-21 Score=154.41 Aligned_cols=140 Identities=10% Similarity=0.107 Sum_probs=99.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccc-----cccchhhhhcCCcEE
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK-----AQDHLPVACKDSIAI 159 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~~~~~a~~v 159 (268)
||+++|.+|||||||++++.+... ....|.+.. +.+. .+|||||+.. +..+. ..++++|++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~--~~~~~~~v~-------~~~~----~~iDtpG~~~~~~~~~~~~~-~~~~~ad~i 68 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT--LARKTQAVE-------FNDK----GDIDTPGEYFSHPRWYHALI-TTLQDVDML 68 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc--cCccceEEE-------ECCC----CcccCCccccCCHHHHHHHH-HHHhcCCEE
Confidence 799999999999999999876531 112333322 2222 2699999732 22222 237899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCC--eEEEEcCCCCcCH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNA--TLFFSSATYNINV 237 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i 237 (268)
++|+|+++.+++ +..|+..+ ....|.++++||+|+. . ...+.+.+++++.++ +++++||++|+|+
T Consensus 69 l~v~d~~~~~s~--~~~~~~~~---~~~~~ii~v~nK~Dl~----~----~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi 135 (158)
T PRK15467 69 IYVHGANDPESR--LPAGLLDI---GVSKRQIAVISKTDMP----D----ADVAATRKLLLETGFEEPIFELNSHDPQSV 135 (158)
T ss_pred EEEEeCCCcccc--cCHHHHhc---cCCCCeEEEEEccccC----c----ccHHHHHHHHHHcCCCCCEEEEECCCccCH
Confidence 999999988876 33455443 2344567999999962 1 124556777778875 8999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 041042 238 NKILKFITAKLFDI 251 (268)
Q Consensus 238 ~~~f~~l~~~i~~~ 251 (268)
+++|+.+.+.+.+.
T Consensus 136 ~~l~~~l~~~~~~~ 149 (158)
T PRK15467 136 QQLVDYLASLTKQE 149 (158)
T ss_pred HHHHHHHHHhchhh
Confidence 99999998776544
No 162
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.87 E-value=3.9e-21 Score=154.03 Aligned_cols=153 Identities=14% Similarity=0.069 Sum_probs=105.1
Q ss_pred EEcCCCChHHHHHHHHhcCCCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccc----cccch---hhhhcCCcEE
Q 041042 88 LLGDCHIGKTSFLEKYVGDEKE-QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK----AQDHL---PVACKDSIAI 159 (268)
Q Consensus 88 vlG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~---~~~~~~a~~v 159 (268)
++|.+|||||||++++.+..+. ..+..| ..+.....+.+++ ...+.+|||+|... ...+. ..+++++|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~-t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFT-TLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCce-eecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 5899999999999999998642 222222 1222223344441 34578999999632 22332 2346789999
Q ss_pred EEEEeCCCh------hhHHHHHHHHHHHHHhCC--------CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCe
Q 041042 160 LFMFDLTSR------CTLKSVIRWYQQARKCNQ--------TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNAT 225 (268)
Q Consensus 160 ilv~D~~~~------~s~~~~~~~~~~i~~~~~--------~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (268)
++|+|+++. .+++.+..|...+..... ..|.++|+||+|+. .. ...............+..
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~---~~--~~~~~~~~~~~~~~~~~~ 153 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLD---DA--EELEEELVRELALEEGAE 153 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcC---ch--hHHHHHHHHHHhcCCCCC
Confidence 999999998 578888888888876542 45567999999972 11 111122233445556788
Q ss_pred EEEEcCCCCcCHHHHHHHHHHH
Q 041042 226 LFFSSATYNINVNKILKFITAK 247 (268)
Q Consensus 226 ~~~~Sa~~~~~i~~~f~~l~~~ 247 (268)
++++||+++.|++++++++.+.
T Consensus 154 ~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 154 VVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EEEEehhhhcCHHHHHHHHHhh
Confidence 9999999999999999998764
No 163
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.87 E-value=9.7e-21 Score=154.78 Aligned_cols=159 Identities=15% Similarity=0.157 Sum_probs=110.7
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCc----------cccccchh
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGD----------AKAQDHLP 150 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~~~ 150 (268)
....||+++|.+|||||||++++++..+...+.++.|.+........ ...+.+|||+|. +.+..+..
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 34689999999999999999999998766666666665543332222 256899999994 34445556
Q ss_pred hhhcCC---cEEEEEEeCCChhhHHH--HHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCe
Q 041042 151 VACKDS---IAILFMFDLTSRCTLKS--VIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNAT 225 (268)
Q Consensus 151 ~~~~~a---~~vilv~D~~~~~s~~~--~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (268)
.|++.+ +++++|+|.++..+... +..|+ .. .+.+.++++||+|+ ++........+++.........+
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l---~~--~~~~~iiv~nK~Dl---~~~~~~~~~~~~i~~~l~~~~~~ 170 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDLQMIEWL---KE--YGIPVLIVLTKADK---LKKGERKKQLKKVRKALKFGDDE 170 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHHHHHHHH---HH--cCCcEEEEEECccc---CCHHHHHHHHHHHHHHHHhcCCc
Confidence 666655 67888899877554432 22333 22 23455799999997 33333333344555555555788
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHHhc
Q 041042 226 LFFSSATYNINVNKILKFITAKLFD 250 (268)
Q Consensus 226 ~~~~Sa~~~~~i~~~f~~l~~~i~~ 250 (268)
++++||+++.|++++|+.|.+.+.+
T Consensus 171 ~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 171 VILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999877654
No 164
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4.6e-21 Score=142.89 Aligned_cols=157 Identities=18% Similarity=0.214 Sum_probs=121.1
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
++++|+++|..++||||++..++-+.. ....||+|.+.. +++ .+.+++++||.+|+++.+.+|++||.+..++|+
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnve--tVt--ykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVE--TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC-cccccccceeEE--EEE--eeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 369999999999999999999988775 567888886654 433 356789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC-C-CCceEEEEeCCCCCCCCCccchhchHHHHHHHH-----HHhCCeEEEEcCCCC
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCN-Q-TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYA-----KALNATLFFSSATYN 234 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~-~-~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~ 234 (268)
|.|..+.+..++.+.-+..+.... - +.+.+|.+||.|++.... .+++..+. +....-...+||.+|
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~-------pqei~d~leLe~~r~~~W~vqp~~a~~g 163 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK-------PQEIQDKLELERIRDRNWYVQPSCALSG 163 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC-------HHHHHHHhccccccCCccEeeccccccc
Confidence 999999998888886666654432 2 334468999999632222 23333332 223344566999999
Q ss_pred cCHHHHHHHHHHHHhc
Q 041042 235 INVNKILKFITAKLFD 250 (268)
Q Consensus 235 ~~i~~~f~~l~~~i~~ 250 (268)
+|+.|-|.|+.+.+..
T Consensus 164 dgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 164 DGLKEGLSWLSNNLKE 179 (180)
T ss_pred hhHHHHHHHHHhhccC
Confidence 9999999999887643
No 165
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.86 E-value=1.9e-21 Score=152.03 Aligned_cols=148 Identities=15% Similarity=0.195 Sum_probs=106.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccc------cchhhhh--cC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQ------DHLPVAC--KD 155 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~~~~~--~~ 155 (268)
++|+++|.||||||||+|++++.+......|.+.++.....+.+.+. .+.++|+||..... .+...|+ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~--~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQ--QVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTE--EEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCc--eEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 58999999999999999999999866666776666776667777774 47799999954332 2334444 68
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCc
Q 041042 156 SIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNI 235 (268)
Q Consensus 156 a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 235 (268)
.|++|+|.|+++.+.--.+ ..++.+. +.|.|+|.||+|+ ..+.....+...+.+.+|++.+.+||++++
T Consensus 79 ~D~ii~VvDa~~l~r~l~l---~~ql~e~--g~P~vvvlN~~D~------a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~ 147 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLYL---TLQLLEL--GIPVVVVLNKMDE------AERKGIEIDAEKLSERLGVPVIPVSARTGE 147 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHH---HHHHHHT--TSSEEEEEETHHH------HHHTTEEE-HHHHHHHHTS-EEEEBTTTTB
T ss_pred CCEEEEECCCCCHHHHHHH---HHHHHHc--CCCEEEEEeCHHH------HHHcCCEECHHHHHHHhCCCEEEEEeCCCc
Confidence 9999999999886533233 3333332 4566899999996 333334456788899999999999999999
Q ss_pred CHHHHHHHH
Q 041042 236 NVNKILKFI 244 (268)
Q Consensus 236 ~i~~~f~~l 244 (268)
|++++++.|
T Consensus 148 g~~~L~~~I 156 (156)
T PF02421_consen 148 GIDELKDAI 156 (156)
T ss_dssp THHHHHHHH
T ss_pred CHHHHHhhC
Confidence 999999875
No 166
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=7e-21 Score=175.55 Aligned_cols=154 Identities=20% Similarity=0.257 Sum_probs=108.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccc--------cccchhhhhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKE-QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK--------AQDHLPVACK 154 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~~~~ 154 (268)
.+|+|+|.+|||||||+++|++..+. ....++++.+.....+.+++.. +.+|||+|.+. +......+++
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRR--FTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcE--EEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 69999999999999999999987642 3344444445555555666654 78999999763 3334566789
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCC
Q 041042 155 DSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYN 234 (268)
Q Consensus 155 ~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 234 (268)
.||++|+|||+++..++.. ..|...+.. .+.|+|+|+||+|+.. . ..+....+....+ ..+++||++|
T Consensus 117 ~aD~il~VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~~----~----~~~~~~~~~~g~~-~~~~iSA~~g 184 (472)
T PRK03003 117 TADAVLFVVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDER----G----EADAAALWSLGLG-EPHPVSALHG 184 (472)
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCCc----c----chhhHHHHhcCCC-CeEEEEcCCC
Confidence 9999999999998876543 344444443 3456689999999621 1 1112222232333 3478999999
Q ss_pred cCHHHHHHHHHHHHhcC
Q 041042 235 INVNKILKFITAKLFDI 251 (268)
Q Consensus 235 ~~i~~~f~~l~~~i~~~ 251 (268)
.|++++|+++++.+.+.
T Consensus 185 ~gi~eL~~~i~~~l~~~ 201 (472)
T PRK03003 185 RGVGDLLDAVLAALPEV 201 (472)
T ss_pred CCcHHHHHHHHhhcccc
Confidence 99999999999988663
No 167
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.86 E-value=9.6e-21 Score=178.06 Aligned_cols=158 Identities=11% Similarity=0.150 Sum_probs=119.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCC-------CCCCCCCC------cceeeEEEEEEE-----CCeEEEEEEEeCCCcccc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDE-------KEQGGSPG------EGLNMMDKTLLV-----RGARISYSIWEVTGDAKA 145 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~-------~~~~~~~t------~~~~~~~~~~~~-----~~~~~~l~i~Dt~G~~~~ 145 (268)
-+|+++|..++|||||+++|+... +...+..+ .|.++....+.+ ++..+.+++|||+|+++|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 479999999999999999998642 22333322 366666554443 567789999999999999
Q ss_pred ccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCC-
Q 041042 146 QDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNA- 224 (268)
Q Consensus 146 ~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~- 224 (268)
...+..+++.+|++|+|||+++..+++....|...+. .+.+.|+|+||+|+. ... ..+...++++.+++
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~----~~~---~~~~~~el~~~lg~~ 153 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLP----SAD---PERVKKEIEEVIGLD 153 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCC----ccC---HHHHHHHHHHHhCCC
Confidence 9999999999999999999999877777777765443 244567999999962 111 12233455566665
Q ss_pred --eEEEEcCCCCcCHHHHHHHHHHHHhcC
Q 041042 225 --TLFFSSATYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 225 --~~~~~Sa~~~~~i~~~f~~l~~~i~~~ 251 (268)
.++++||++|.|++++|+.|.+.+...
T Consensus 154 ~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 154 ASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred cceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 479999999999999999999887554
No 168
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.86 E-value=2.2e-20 Score=146.58 Aligned_cols=146 Identities=15% Similarity=0.244 Sum_probs=106.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhhhhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKE-QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDH--------LPVACK 154 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~~ 154 (268)
+||+++|++|+|||||++++.+..+. ....+++..++....+..++ ..+.+|||+|...+... ...++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 68999999999999999999987642 22333344444444555554 45789999997665332 234677
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCC
Q 041042 155 DSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYN 234 (268)
Q Consensus 155 ~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 234 (268)
.+|++++|+|+++..+......|.. ....++++|+||+|+. ... .. .....+.+++++||+++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~---~~~-~~--------~~~~~~~~~~~~Sa~~~ 142 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLL---PDS-EL--------LSLLAGKPIIAISAKTG 142 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcC---Ccc-cc--------ccccCCCceEEEECCCC
Confidence 9999999999999888777655433 3356668999999972 211 11 34455778999999999
Q ss_pred cCHHHHHHHHHHHH
Q 041042 235 INVNKILKFITAKL 248 (268)
Q Consensus 235 ~~i~~~f~~l~~~i 248 (268)
.|+++++++|.+.+
T Consensus 143 ~~v~~l~~~l~~~~ 156 (157)
T cd04164 143 EGLDELKEALLELA 156 (157)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999988754
No 169
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.86 E-value=9.6e-21 Score=173.15 Aligned_cols=148 Identities=16% Similarity=0.216 Sum_probs=111.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhhhh
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEK-EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDH--------LPVAC 153 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~ 153 (268)
.+||+++|.+|||||||+|+|++... .....+.+..++....+.+++. .+.+|||+|.+.+... ...++
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI--PLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCe--EEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 48999999999999999999998764 2233444445666667777764 4789999998765432 23468
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCC
Q 041042 154 KDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATY 233 (268)
Q Consensus 154 ~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 233 (268)
+++|++++|||+++..+++....|.. ..+.|.++|+||+|+. +. .... ...+.+++++||++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~---~~---~~~~-------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLT---GE---IDLE-------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhcc---cc---chhh-------hccCCceEEEEeeC
Confidence 89999999999999988887655543 3355668999999972 11 1111 34467899999999
Q ss_pred CcCHHHHHHHHHHHHhc
Q 041042 234 NINVNKILKFITAKLFD 250 (268)
Q Consensus 234 ~~~i~~~f~~l~~~i~~ 250 (268)
|.|+++++++|.+.+..
T Consensus 355 g~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 355 GEGIDELREAIKELAFG 371 (449)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999988754
No 170
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.85 E-value=3.9e-20 Score=169.07 Aligned_cols=163 Identities=18% Similarity=0.207 Sum_probs=109.7
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccch-----------
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKE-QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHL----------- 149 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----------- 149 (268)
..+||+++|.+|||||||+++|++.... ....+.+..+.....+..++. .+.+|||+|..++....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence 4589999999999999999999987632 223333333444445555555 57899999976554322
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHH-HHHHhCCeEEE
Q 041042 150 PVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARA-YAKALNATLFF 228 (268)
Q Consensus 150 ~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 228 (268)
..+++.+|++|+|+|+++..+.++.. ++..+... +.+.|+|+||+|+.. ..+.......++.. +....++++++
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~~--~~~iiiv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~vi~ 323 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILEA--GKALVIVVNKWDLVK--DEKTREEFKKELRRKLPFLDFAPIVF 323 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHHc--CCcEEEEEECcccCC--CHHHHHHHHHHHHHhcccCCCCceEE
Confidence 24678999999999999888776654 33333332 456689999999720 11111111222222 12223578999
Q ss_pred EcCCCCcCHHHHHHHHHHHHhcC
Q 041042 229 SSATYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 229 ~Sa~~~~~i~~~f~~l~~~i~~~ 251 (268)
+||++|.|++++|+++.+.....
T Consensus 324 ~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 324 ISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999998866543
No 171
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.85 E-value=2.1e-20 Score=151.06 Aligned_cols=150 Identities=14% Similarity=0.124 Sum_probs=102.4
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcc----------ccccch
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA----------KAQDHL 149 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~ 149 (268)
.....+|+|+|.+|+|||||++++.+..+...+.++.|.+.....+..++ .+.+|||+|.. .+..+.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 34568999999999999999999999875555555655554433333332 58899999942 344444
Q ss_pred hhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhC--C
Q 041042 150 PVACKD---SIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALN--A 224 (268)
Q Consensus 150 ~~~~~~---a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~ 224 (268)
..|++. ++++++|+|.++.-+..+.. ++..+... ..|.++|+||+|+ ..........+++++.+...+ .
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~~--~~pviiv~nK~D~---~~~~~~~~~~~~i~~~l~~~~~~~ 165 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRER--GIPVLIVLTKADK---LKKSELNKQLKKIKKALKKDADDP 165 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHHc--CCCEEEEEECccc---CCHHHHHHHHHHHHHHHhhccCCC
Confidence 556654 57999999998765555442 23333322 3455799999997 333333334566667776664 5
Q ss_pred eEEEEcCCCCcCHH
Q 041042 225 TLFFSSATYNINVN 238 (268)
Q Consensus 225 ~~~~~Sa~~~~~i~ 238 (268)
.++++||++|+|++
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 79999999999974
No 172
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.85 E-value=4.6e-20 Score=144.84 Aligned_cols=146 Identities=16% Similarity=0.146 Sum_probs=99.1
Q ss_pred EEEcCCCChHHHHHHHHhcCC--CCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccccc--------chhhhhcCC
Q 041042 87 SLLGDCHIGKTSFLEKYVGDE--KEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQD--------HLPVACKDS 156 (268)
Q Consensus 87 ~vlG~~~vGKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~~~a 156 (268)
+++|.+|||||||++++.+.. +.....+ +..+........++ ..+.+|||+|...+.. ....+++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPG-VTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCC-ceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 479999999999999999875 2233333 23334444455554 5688999999887544 334567899
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCC-eEEEEcCCCCc
Q 041042 157 IAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNA-TLFFSSATYNI 235 (268)
Q Consensus 157 ~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 235 (268)
|++++|+|..+..+..... ....+... ..|.++|+||+|+. .. ... .......+. +++++||++|.
T Consensus 78 d~ii~v~d~~~~~~~~~~~-~~~~~~~~--~~piiiv~nK~D~~---~~---~~~----~~~~~~~~~~~~~~~Sa~~~~ 144 (157)
T cd01894 78 DVILFVVDGREGLTPADEE-IAKYLRKS--KKPVILVVNKVDNI---KE---EDE----AAEFYSLGFGEPIPISAEHGR 144 (157)
T ss_pred CEEEEEEeccccCCccHHH-HHHHHHhc--CCCEEEEEECcccC---Ch---HHH----HHHHHhcCCCCeEEEecccCC
Confidence 9999999998765544321 22223222 35667999999972 11 111 222334555 78999999999
Q ss_pred CHHHHHHHHHHHH
Q 041042 236 NVNKILKFITAKL 248 (268)
Q Consensus 236 ~i~~~f~~l~~~i 248 (268)
|++++|+++++.+
T Consensus 145 gv~~l~~~l~~~~ 157 (157)
T cd01894 145 GIGDLLDAILELL 157 (157)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998753
No 173
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.85 E-value=4.9e-20 Score=151.84 Aligned_cols=161 Identities=19% Similarity=0.208 Sum_probs=111.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCC-cEEEEEE
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDS-IAILFMF 163 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a-~~vilv~ 163 (268)
+|+++|++|||||||+++|..+.+...+.++ ..+.........+....+.+||+||+++++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999998876655443 3333222222224457799999999999998888999999 9999999
Q ss_pred eCCCh-hhHHHHHHHHHHHHHh----CCCCceEEEEeCCCCCCCCCccchhc-hHHHHHHHHHHh---------------
Q 041042 164 DLTSR-CTLKSVIRWYQQARKC----NQTAIPIIIGTKFDDFIQLPIDLQWT-IASQARAYAKAL--------------- 222 (268)
Q Consensus 164 D~~~~-~s~~~~~~~~~~i~~~----~~~~~~ilvgnK~Dl~~~~~~~~~~~-~~~~~~~~~~~~--------------- 222 (268)
|+++. .++..+..|+..+... .+..|++||+||+|+....+.+..+. ...++..+....
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~ 160 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKE 160 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 99998 7888887776655332 23555579999999854433221111 122332222211
Q ss_pred -----------------CCeEEEEcCCCCc-CHHHHHHHHHH
Q 041042 223 -----------------NATLFFSSATYNI-NVNKILKFITA 246 (268)
Q Consensus 223 -----------------~~~~~~~Sa~~~~-~i~~~f~~l~~ 246 (268)
.+.+.++|++.+. |++++.+||.+
T Consensus 161 ~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 161 SLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred ccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 1346778887766 58888887753
No 174
>PRK11058 GTPase HflX; Provisional
Probab=99.84 E-value=5.7e-20 Score=166.44 Aligned_cols=157 Identities=11% Similarity=0.097 Sum_probs=109.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccc--ccchh------hhhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKA--QDHLP------VACKD 155 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--~~~~~------~~~~~ 155 (268)
.+|+++|.+|||||||+|+|++..+.....+..+.+.....+.+.+. ..+.+|||+|..+. ..++. ..++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999987754433333344555555666543 14679999997432 22222 23689
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhCC-CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCe-EEEEcCCC
Q 041042 156 SIAILFMFDLTSRCTLKSVIRWYQQARKCNQ-TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNAT-LFFSSATY 233 (268)
Q Consensus 156 a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~ 233 (268)
||++|+|+|++++.+++.+..|...+..... +.|+|+|+||+|+. ... .. ... ....+.+ ++++||++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~---~~~---~~--~~~--~~~~~~~~~v~ISAkt 346 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML---DDF---EP--RID--RDEENKPIRVWLSAQT 346 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC---Cch---hH--HHH--HHhcCCCceEEEeCCC
Confidence 9999999999999888887665555554433 45567999999972 111 11 111 1123555 48899999
Q ss_pred CcCHHHHHHHHHHHHhcC
Q 041042 234 NINVNKILKFITAKLFDI 251 (268)
Q Consensus 234 ~~~i~~~f~~l~~~i~~~ 251 (268)
|.|+++++++|.+.+...
T Consensus 347 G~GIdeL~e~I~~~l~~~ 364 (426)
T PRK11058 347 GAGIPLLFQALTERLSGE 364 (426)
T ss_pred CCCHHHHHHHHHHHhhhc
Confidence 999999999999988543
No 175
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.84 E-value=7.9e-20 Score=171.73 Aligned_cols=158 Identities=16% Similarity=0.124 Sum_probs=117.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC---CCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD---EKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
+.|+++|..++|||||+++|.+. .+...+..+++.++....+..++ ..+.+||+||+++|......++.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 35899999999999999999963 34445555666666555566665 67899999999999888888889999999
Q ss_pred EEEeCCC---hhhHHHHHHHHHHHHHhCCCCc-eEEEEeCCCCCCCCCccchhchHHHHHHHHHHh----CCeEEEEcCC
Q 041042 161 FMFDLTS---RCTLKSVIRWYQQARKCNQTAI-PIIIGTKFDDFIQLPIDLQWTIASQARAYAKAL----NATLFFSSAT 232 (268)
Q Consensus 161 lv~D~~~---~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~ 232 (268)
+|+|+++ .++++.+. .+... +.+ +|||+||+|+ ...+......+++.++.+.. +++++++||+
T Consensus 79 LVVDa~~G~~~qT~ehl~----il~~l--gi~~iIVVlNK~Dl---v~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~ 149 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VLDLL--GIPHTIVVITKADR---VNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK 149 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HHHHc--CCCeEEEEEECCCC---CCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence 9999988 45555442 22222 445 5799999997 22222223456677777665 5789999999
Q ss_pred CCcCHHHHHHHHHHHHhcCc
Q 041042 233 YNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 233 ~~~~i~~~f~~l~~~i~~~~ 252 (268)
+|.|++++++.+.+.+....
T Consensus 150 tG~GI~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 150 TGQGIGELKKELKNLLESLD 169 (581)
T ss_pred CCCCchhHHHHHHHHHHhCC
Confidence 99999999999887765543
No 176
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.84 E-value=7.5e-20 Score=172.07 Aligned_cols=146 Identities=14% Similarity=0.151 Sum_probs=110.7
Q ss_pred cCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccc------hhhhh--cCCcEEEE
Q 041042 90 GDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDH------LPVAC--KDSIAILF 161 (268)
Q Consensus 90 G~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------~~~~~--~~a~~vil 161 (268)
|++|||||||+|++.+..+...+.++++.+.....+.+++.+ +++|||+|++.+... .+.|+ +++|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~--i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGED--IEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeE--EEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 899999999999999988766677766777666667676654 789999999887654 34444 37899999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHH
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKIL 241 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f 241 (268)
|+|.++.+. ...+..++.+ .+.|.++|+||+|+ .++.....+.+.+++..+++++++||++|+|++++|
T Consensus 79 VvDat~ler---~l~l~~ql~~--~~~PiIIVlNK~Dl------~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~ 147 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLLE--LGIPMILALNLVDE------AEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLK 147 (591)
T ss_pred EecCCcchh---hHHHHHHHHh--cCCCEEEEEehhHH------HHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHH
Confidence 999987442 2233333333 24566899999996 222333456788899999999999999999999999
Q ss_pred HHHHHHH
Q 041042 242 KFITAKL 248 (268)
Q Consensus 242 ~~l~~~i 248 (268)
+++.+.+
T Consensus 148 ~~i~~~~ 154 (591)
T TIGR00437 148 DAIRKAI 154 (591)
T ss_pred HHHHHHh
Confidence 9998754
No 177
>PRK00089 era GTPase Era; Reviewed
Probab=99.83 E-value=2.5e-19 Score=155.75 Aligned_cols=172 Identities=15% Similarity=0.158 Sum_probs=115.2
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCC--CCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccc--------cchhh
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQ--GGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQ--------DHLPV 151 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~ 151 (268)
+.-.|+++|.+|||||||+|++++..+.. ....|+. +.. ..+... ....+.+|||+|..... .....
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~-~~i-~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~ 80 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR-HRI-RGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWS 80 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCccc-ccE-EEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHH
Confidence 34679999999999999999999987532 1222222 111 112122 23678999999965432 22334
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhC-CeEEEEc
Q 041042 152 ACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALN-ATLFFSS 230 (268)
Q Consensus 152 ~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~S 230 (268)
.+.++|++++|+|+++..+- .....++.+. ..+.|.++|+||+|+ .. ......+....+.+..+ .+++++|
T Consensus 81 ~~~~~D~il~vvd~~~~~~~-~~~~i~~~l~--~~~~pvilVlNKiDl---~~--~~~~l~~~~~~l~~~~~~~~i~~iS 152 (292)
T PRK00089 81 SLKDVDLVLFVVDADEKIGP-GDEFILEKLK--KVKTPVILVLNKIDL---VK--DKEELLPLLEELSELMDFAEIVPIS 152 (292)
T ss_pred HHhcCCEEEEEEeCCCCCCh-hHHHHHHHHh--hcCCCEEEEEECCcC---CC--CHHHHHHHHHHHHhhCCCCeEEEec
Confidence 57899999999999883221 1122223332 124566899999997 21 12334455666666554 6789999
Q ss_pred CCCCcCHHHHHHHHHHHHhcCccchhcccCCCCC
Q 041042 231 ATYNINVNKILKFITAKLFDIPWTLERNLTIGEP 264 (268)
Q Consensus 231 a~~~~~i~~~f~~l~~~i~~~~~~~~~~~~~~~~ 264 (268)
|++|.|++++++++.+.+.+.++..+.+...+.+
T Consensus 153 A~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~ 186 (292)
T PRK00089 153 ALKGDNVDELLDVIAKYLPEGPPYYPEDQITDRP 186 (292)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 9999999999999999999888877777665554
No 178
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.83 E-value=1.5e-19 Score=169.41 Aligned_cols=154 Identities=13% Similarity=0.141 Sum_probs=109.2
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
...+|+++|..++|||||+++|.+..+...+.+++..+.....+.+++.. .+.||||||++.|..++..++..+|++|+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 44799999999999999999999988876665555555544555554432 68899999999999999999999999999
Q ss_pred EEeCCCh---hhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHH---HHHHhC--CeEEEEcCCC
Q 041042 162 MFDLTSR---CTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARA---YAKALN--ATLFFSSATY 233 (268)
Q Consensus 162 v~D~~~~---~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~Sa~~ 233 (268)
|+|+++. ++++.+ ..+.. .+.|.|+++||+|+. ........+++.. ....++ .+++++||++
T Consensus 165 VVda~dgv~~qT~e~i----~~~~~--~~vPiIVviNKiDl~----~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAkt 234 (587)
T TIGR00487 165 VVAADDGVMPQTIEAI----SHAKA--ANVPIIVAINKIDKP----EANPDRVKQELSEYGLVPEDWGGDTIFVPVSALT 234 (587)
T ss_pred EEECCCCCCHhHHHHH----HHHHH--cCCCEEEEEECcccc----cCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCC
Confidence 9998873 333322 22222 245667999999963 1111111122211 122232 5799999999
Q ss_pred CcCHHHHHHHHHH
Q 041042 234 NINVNKILKFITA 246 (268)
Q Consensus 234 ~~~i~~~f~~l~~ 246 (268)
|.|++++|+++..
T Consensus 235 GeGI~eLl~~I~~ 247 (587)
T TIGR00487 235 GDGIDELLDMILL 247 (587)
T ss_pred CCChHHHHHhhhh
Confidence 9999999999874
No 179
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.83 E-value=4.6e-19 Score=141.12 Aligned_cols=156 Identities=19% Similarity=0.287 Sum_probs=101.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccccc----------c-hh
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKE-QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQD----------H-LP 150 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~-~~ 150 (268)
.+||+++|.+|+|||||++++.+..+. ....++...+.....+..++.. +.+|||+|...... . ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccccchhccHHHHHHHHHH
Confidence 479999999999999999999987632 2222322333333444555544 67999999754311 1 12
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHh----CCeE
Q 041042 151 VACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKAL----NATL 226 (268)
Q Consensus 151 ~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 226 (268)
.++..+|++++|+|+++..+..... ++..+.. .+.++++|+||+|+. ... ..........+.+.. +.++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~--~~~~~iiv~nK~Dl~---~~~-~~~~~~~~~~~~~~~~~~~~~~~ 152 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE--EGKALVIVVNKWDLV---EKD-SKTMKEFKKEIRRKLPFLDYAPI 152 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh--cCCCEEEEEeccccC---Ccc-HHHHHHHHHHHHhhcccccCCce
Confidence 3467899999999999987765543 3333332 245667999999972 211 011122222233333 4789
Q ss_pred EEEcCCCCcCHHHHHHHHHHH
Q 041042 227 FFSSATYNINVNKILKFITAK 247 (268)
Q Consensus 227 ~~~Sa~~~~~i~~~f~~l~~~ 247 (268)
+++||+++.|++++++.+.+.
T Consensus 153 ~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 153 VFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EEEeccCCCCHHHHHHHHHHh
Confidence 999999999999999998753
No 180
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.82 E-value=3.2e-19 Score=147.03 Aligned_cols=160 Identities=16% Similarity=0.158 Sum_probs=102.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCC---CCCCC--CCcceeeEEEEEE-----------------------EC--C----
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEK---EQGGS--PGEGLNMMDKTLL-----------------------VR--G---- 129 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~---~~~~~--~t~~~~~~~~~~~-----------------------~~--~---- 129 (268)
+.|+++|..|+|||||+..+.+-.. ..... -|+...+...... .. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 3689999999999999999865411 00000 0111111110000 00 1
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCc
Q 041042 130 ARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSR----CTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPI 205 (268)
Q Consensus 130 ~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~----~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~ 205 (268)
....+.||||+|++.|.......+..+|++++|+|+++. .+++.+..| ... ...++|||+||+|+ ...
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~~-~~~~iiivvNK~Dl---~~~ 152 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EIM-GLKHIIIVQNKIDL---VKE 152 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HHc-CCCcEEEEEEchhc---cCH
Confidence 126789999999998877777777889999999999873 334433322 222 12345789999997 221
Q ss_pred cchhchHHHHHHHHHHh---CCeEEEEcCCCCcCHHHHHHHHHHHHhcC
Q 041042 206 DLQWTIASQARAYAKAL---NATLFFSSATYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 206 ~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~f~~l~~~i~~~ 251 (268)
.......++++++++.. +++++++||++|+|++++|+.|.+.+.+.
T Consensus 153 ~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 153 EQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred HHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 21222245555555543 67899999999999999999998877553
No 181
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=4.1e-19 Score=162.62 Aligned_cols=148 Identities=16% Similarity=0.253 Sum_probs=105.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccc--------cccchhhhhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKE-QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK--------AQDHLPVACK 154 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~~~~ 154 (268)
.||+++|.+|||||||+++|.+.... ....+.++.+.....+.+++ ..+.+|||+|++. +......+++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987641 22334344455556666666 5689999999886 2233456788
Q ss_pred CCcEEEEEEeCCChhhHH--HHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCe-EEEEcC
Q 041042 155 DSIAILFMFDLTSRCTLK--SVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNAT-LFFSSA 231 (268)
Q Consensus 155 ~a~~vilv~D~~~~~s~~--~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa 231 (268)
.+|++|+|+|+++..+.. .+..|+... +.|.|+|+||+|+. . . .+...++ ...++. ++++||
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~----~--~---~~~~~~~-~~lg~~~~~~iSa 144 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRKS-----NKPVILVVNKVDGP----D--E---EADAYEF-YSLGLGEPYPISA 144 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCc----c--c---hhhHHHH-HhcCCCCCEEEEe
Confidence 999999999998754432 334554432 45668999999952 1 1 1222222 345664 899999
Q ss_pred CCCcCHHHHHHHHHHHH
Q 041042 232 TYNINVNKILKFITAKL 248 (268)
Q Consensus 232 ~~~~~i~~~f~~l~~~i 248 (268)
++|.|++++|+.+....
T Consensus 145 ~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 145 EHGRGIGDLLDAILEEL 161 (435)
T ss_pred eCCCCHHHHHHHHHhhC
Confidence 99999999999998843
No 182
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.81 E-value=4.1e-19 Score=168.89 Aligned_cols=157 Identities=14% Similarity=0.126 Sum_probs=110.8
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCccee--eEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLN--MMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
...+|+|+|..++|||||+++|.+..+......++..+ .+...+..++....+.||||||++.|..++..++..+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 44689999999999999999999887765544433322 2223333445568899999999999999999999999999
Q ss_pred EEEEeCCCh---hhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHH---HHHHhC--CeEEEEcC
Q 041042 160 LFMFDLTSR---CTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARA---YAKALN--ATLFFSSA 231 (268)
Q Consensus 160 ilv~D~~~~---~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~Sa 231 (268)
|+|+|+++. .+++.+. .+.. .+.|.|||+||+|+. ........+++.. +...++ ++++++||
T Consensus 323 ILVVDA~dGv~~QT~E~I~----~~k~--~~iPiIVViNKiDl~----~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSA 392 (742)
T CHL00189 323 ILIIAADDGVKPQTIEAIN----YIQA--ANVPIIVAINKIDKA----NANTERIKQQLAKYNLIPEKWGGDTPMIPISA 392 (742)
T ss_pred EEEEECcCCCChhhHHHHH----HHHh--cCceEEEEEECCCcc----ccCHHHHHHHHHHhccchHhhCCCceEEEEEC
Confidence 999999874 3444332 2222 244557999999963 1111111222222 133344 68999999
Q ss_pred CCCcCHHHHHHHHHHHH
Q 041042 232 TYNINVNKILKFITAKL 248 (268)
Q Consensus 232 ~~~~~i~~~f~~l~~~i 248 (268)
++|.|++++|+.|....
T Consensus 393 ktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 393 SQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCCHHHHHHhhhhhh
Confidence 99999999999988754
No 183
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.81 E-value=1.2e-18 Score=137.52 Aligned_cols=156 Identities=17% Similarity=0.096 Sum_probs=102.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccccc--------chhhhhc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQD--------HLPVACK 154 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~~ 154 (268)
..+|+++|.+|+|||||++++.+..+....... .................+.+|||+|...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKP-QTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCC-CceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 579999999999999999999987643221111 1111111122333456788999999754322 2344678
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHh-CCeEEEEcCCC
Q 041042 155 DSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKAL-NATLFFSSATY 233 (268)
Q Consensus 155 ~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~ 233 (268)
.+|++++|+|+++..+. ....+...+... +.+.++|+||+|+. . ......+....+.... ..+++++|+++
T Consensus 82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~--~~~~iiv~nK~Dl~---~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 153 (168)
T cd04163 82 DVDLVLFVVDASEPIGE-GDEFILELLKKS--KTPVILVLNKIDLV---K--DKEDLLPLLEKLKELGPFAEIFPISALK 153 (168)
T ss_pred hCCEEEEEEECCCccCc-hHHHHHHHHHHh--CCCEEEEEEchhcc---c--cHHHHHHHHHHHHhccCCCceEEEEecc
Confidence 99999999999987221 112333334332 45668999999972 1 1223344455555555 36899999999
Q ss_pred CcCHHHHHHHHHHH
Q 041042 234 NINVNKILKFITAK 247 (268)
Q Consensus 234 ~~~i~~~f~~l~~~ 247 (268)
+.|++++|+.|.+.
T Consensus 154 ~~~~~~l~~~l~~~ 167 (168)
T cd04163 154 GENVDELLEEIVKY 167 (168)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999998764
No 184
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.81 E-value=6.3e-19 Score=169.80 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=110.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccc----------cccch-h
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKE-QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK----------AQDHL-P 150 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~-~ 150 (268)
..||+++|.+|||||||+++|++.++. ....++++.+.....+.+++.. +.+|||+|..+ |..+. .
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHHH
Confidence 479999999999999999999998742 2333434456655666777766 55899999642 22221 2
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHH-HhCCeEEEE
Q 041042 151 VACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAK-ALNATLFFS 229 (268)
Q Consensus 151 ~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 229 (268)
.+++.+|++++|+|+++..+++.+.. +..+.. .+.|.|||+||+|| ...........+...... ...++.+++
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~i-~~~~~~--~~~piIiV~NK~DL---~~~~~~~~~~~~~~~~l~~~~~~~ii~i 601 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLKV-MSMAVD--AGRALVLVFNKWDL---MDEFRRQRLERLWKTEFDRVTWARRVNL 601 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH--cCCCEEEEEEchhc---CChhHHHHHHHHHHHhccCCCCCCEEEE
Confidence 34789999999999999988887653 344433 24566899999997 222111111222211111 123567999
Q ss_pred cCCCCcCHHHHHHHHHHHHhcC
Q 041042 230 SATYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 230 Sa~~~~~i~~~f~~l~~~i~~~ 251 (268)
||++|.|++++|+.+.+.+.+.
T Consensus 602 SAktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 602 SAKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred ECCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999887653
No 185
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.81 E-value=9.8e-19 Score=138.47 Aligned_cols=153 Identities=14% Similarity=0.205 Sum_probs=105.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcc----------ccccchhhhhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA----------KAQDHLPVACK 154 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~~ 154 (268)
+|+++|.+|+|||||++.+.++.+.....++.+.+.....+..++ .+.+|||+|.. .+......|+.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999997776666667666655444444443 78899999942 23444455554
Q ss_pred ---CCcEEEEEEeCCChhh--HHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHH--HhCCeEE
Q 041042 155 ---DSIAILFMFDLTSRCT--LKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAK--ALNATLF 227 (268)
Q Consensus 155 ---~a~~vilv~D~~~~~s--~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 227 (268)
..+++++++|.++..+ ...+..|+... ..+.++|+||+|+ .................+ ....+++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~---~~~~~~~~~~~~~~~~l~~~~~~~~~~ 149 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKADK---LKKSELAKALKEIKKELKLFEIDPPII 149 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchhc---CChHHHHHHHHHHHHHHHhccCCCceE
Confidence 3568899999876532 23344555443 3455799999997 333333333344444443 3456889
Q ss_pred EEcCCCCcCHHHHHHHHHHHH
Q 041042 228 FSSATYNINVNKILKFITAKL 248 (268)
Q Consensus 228 ~~Sa~~~~~i~~~f~~l~~~i 248 (268)
++||+++.|+.++++.|.+.+
T Consensus 150 ~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 150 LFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred EEecCCCCCHHHHHHHHHHhC
Confidence 999999999999999998753
No 186
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.81 E-value=1.1e-18 Score=167.32 Aligned_cols=155 Identities=12% Similarity=0.120 Sum_probs=110.5
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
.....|+++|..++|||||+++|.+..+......++..+.....+.+++ ..+.||||+|++.|..++..+++.+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 3457899999999999999999998877655554444344334455555 45889999999999999999999999999
Q ss_pred EEEeCCCh---hhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHH---HHHHHHhC--CeEEEEcCC
Q 041042 161 FMFDLTSR---CTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQA---RAYAKALN--ATLFFSSAT 232 (268)
Q Consensus 161 lv~D~~~~---~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~Sa~ 232 (268)
+|||+++. ++++.+ ..+.. .+.|+||++||+|+. .........++ ..++..++ ++++++||+
T Consensus 366 LVVdAddGv~~qT~e~i----~~a~~--~~vPiIVviNKiDl~----~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAk 435 (787)
T PRK05306 366 LVVAADDGVMPQTIEAI----NHAKA--AGVPIIVAINKIDKP----GANPDRVKQELSEYGLVPEEWGGDTIFVPVSAK 435 (787)
T ss_pred EEEECCCCCCHhHHHHH----HHHHh--cCCcEEEEEECcccc----ccCHHHHHHHHHHhcccHHHhCCCceEEEEeCC
Confidence 99999873 343332 12222 245667999999962 11111122222 12344444 789999999
Q ss_pred CCcCHHHHHHHHHHH
Q 041042 233 YNINVNKILKFITAK 247 (268)
Q Consensus 233 ~~~~i~~~f~~l~~~ 247 (268)
+|.||+++|++|...
T Consensus 436 tG~GI~eLle~I~~~ 450 (787)
T PRK05306 436 TGEGIDELLEAILLQ 450 (787)
T ss_pred CCCCchHHHHhhhhh
Confidence 999999999998754
No 187
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.80 E-value=1.5e-18 Score=166.95 Aligned_cols=153 Identities=14% Similarity=0.101 Sum_probs=113.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccc----------hhhh
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDH----------LPVA 152 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------~~~~ 152 (268)
.++|+++|.+|||||||+|++.+........+ |.+...+...+.....++++|||||...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~p--GvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWA--GVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCC--CceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 57999999999999999999998765444444 45555455455555667899999998876432 2234
Q ss_pred h--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEc
Q 041042 153 C--KDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSS 230 (268)
Q Consensus 153 ~--~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 230 (268)
+ ..+|++++|+|.++.+.- ..|..++.+. +.|.++|.||+|+. +++....+.+++.+.+|++++++|
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~--giPvIvVlNK~Dl~------~~~~i~id~~~L~~~LG~pVvpiS 149 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLEL--GIPCIVALNMLDIA------EKQNIRIDIDALSARLGCPVIPLV 149 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHHc--CCCEEEEEEchhhh------hccCcHHHHHHHHHHhCCCEEEEE
Confidence 3 489999999999886542 2344455443 45668999999962 223345667888999999999999
Q ss_pred CCCCcCHHHHHHHHHHHH
Q 041042 231 ATYNINVNKILKFITAKL 248 (268)
Q Consensus 231 a~~~~~i~~~f~~l~~~i 248 (268)
|++|+|++++++.+.+..
T Consensus 150 A~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 150 STRGRGIEALKLAIDRHQ 167 (772)
T ss_pred eecCCCHHHHHHHHHHhh
Confidence 999999999999987754
No 188
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=1.6e-18 Score=158.73 Aligned_cols=161 Identities=19% Similarity=0.238 Sum_probs=107.1
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCC-CCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccc-----------h
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDE-KEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDH-----------L 149 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-----------~ 149 (268)
..+||+++|.+|+|||||++++++.. ......+++..+.....+..++.. +.+|||+|..+...+ .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQK--YTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCee--EEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 46999999999999999999999865 223333433333333444455544 678999996443221 1
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHH-HHHHHhCCeEEE
Q 041042 150 PVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQAR-AYAKALNATLFF 228 (268)
Q Consensus 150 ~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 228 (268)
..+++.+|++|+|+|+++..+.++.. +...+.+. ..+.|+|+||+|+ ...+......+++. .+.....+++++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~--~~~~ivv~NK~Dl---~~~~~~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALEA--GRALVIVVNKWDL---VDEKTMEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc--CCcEEEEEECccC---CCHHHHHHHHHHHHHhcccccCCCEEE
Confidence 23678999999999999887776654 33333332 4566899999997 22221222222222 222223578999
Q ss_pred EcCCCCcCHHHHHHHHHHHHhc
Q 041042 229 SSATYNINVNKILKFITAKLFD 250 (268)
Q Consensus 229 ~Sa~~~~~i~~~f~~l~~~i~~ 250 (268)
+||++|.|++++|+.+.+...+
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998875543
No 189
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.80 E-value=3.1e-19 Score=133.32 Aligned_cols=159 Identities=15% Similarity=0.210 Sum_probs=119.0
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
...++||.++|-.++|||||++++.+... .+..||.| |..+.+..++ ++++++||.+||...+.+|..||.+.|++
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceE
Confidence 35679999999999999999999988764 56777777 4456666654 67899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC-CCCce-EEEEeCCCCCCCCCccchhchHHHHHH----HHHHhCCeEEEEcCCC
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCN-QTAIP-IIIGTKFDDFIQLPIDLQWTIASQARA----YAKALNATLFFSSATY 233 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~ 233 (268)
|+|+|.+|..-|+++..-+-++..-. -...| .|.+||.|+. .... ..+.+.. ..+.....+-+|||.+
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdll---taa~---~eeia~klnl~~lrdRswhIq~csals 163 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLL---TAAK---VEEIALKLNLAGLRDRSWHIQECSALS 163 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHH---hhcc---hHHHHHhcchhhhhhceEEeeeCcccc
Confidence 99999999999998876555554432 23344 5889999972 2211 1121111 1222234577799999
Q ss_pred CcCHHHHHHHHHHHH
Q 041042 234 NINVNKILKFITAKL 248 (268)
Q Consensus 234 ~~~i~~~f~~l~~~i 248 (268)
++|+.+-.+++....
T Consensus 164 ~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 164 LEGSTDGSDWVQSNP 178 (185)
T ss_pred ccCccCcchhhhcCC
Confidence 999998888876543
No 190
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.2e-19 Score=140.08 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=121.3
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCC---C----CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhc
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDE---K----EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACK 154 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~---~----~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 154 (268)
..+-|+|+|..++|||||+.+..... + .....+|+|.+...+ .+. ...+.+||.+||+..+++|..||.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i--~v~--~~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTI--EVC--NAPLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecce--eec--cceeEEEEcCChHHHHHHHHHHHH
Confidence 35889999999999999998875421 1 234567778766443 344 455889999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHH---HHHh---CCeE
Q 041042 155 DSIAILFMFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAY---AKAL---NATL 226 (268)
Q Consensus 155 ~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~---~~~~---~~~~ 226 (268)
.+|++|+++|++|++.|+....-++.+.... .+.|.++.+||.|+.+ .....++... ++.. .+++
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~-------~~~~~El~~~~~~~e~~~~rd~~~ 164 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQN-------AMEAAELDGVFGLAELIPRRDNPF 164 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhh-------hhhHHHHHHHhhhhhhcCCccCcc
Confidence 9999999999999999999887777776653 3455568999999621 1122222222 3333 3678
Q ss_pred EEEcCCCCcCHHHHHHHHHHHHhcC
Q 041042 227 FFSSATYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 227 ~~~Sa~~~~~i~~~f~~l~~~i~~~ 251 (268)
..+||.+|+||++-..|+++.+..+
T Consensus 165 ~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 165 QPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccchhhhcccHHHHHHHHHHHHhhc
Confidence 8899999999999999999988776
No 191
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.79 E-value=2.8e-18 Score=156.89 Aligned_cols=150 Identities=17% Similarity=0.247 Sum_probs=105.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCc--------cccccchhhhhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKE-QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGD--------AKAQDHLPVACKD 155 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--------~~~~~~~~~~~~~ 155 (268)
||+++|.+|||||||+|+|.+.... ....+.+..+.....+..++. .+.+|||+|. +.+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999987631 222333334444455556665 4889999996 3344556667899
Q ss_pred CcEEEEEEeCCChhhHHH--HHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCC-eEEEEcCC
Q 041042 156 SIAILFMFDLTSRCTLKS--VIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNA-TLFFSSAT 232 (268)
Q Consensus 156 a~~vilv~D~~~~~s~~~--~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 232 (268)
+|++++|+|..+..+... +..|+. +. +.|.++|+||+|+. .. .. ...+ ...+++ +++++||+
T Consensus 79 ad~vl~vvD~~~~~~~~d~~i~~~l~---~~--~~piilVvNK~D~~---~~---~~---~~~~-~~~lg~~~~~~vSa~ 143 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDEEIAKWLR---KS--GKPVILVANKIDGK---KE---DA---VAAE-FYSLGFGEPIPISAE 143 (429)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHH---Hh--CCCEEEEEECccCC---cc---cc---cHHH-HHhcCCCCeEEEeCC
Confidence 999999999987544332 334443 22 45668999999962 11 11 1122 335566 79999999
Q ss_pred CCcCHHHHHHHHHHHHhcC
Q 041042 233 YNINVNKILKFITAKLFDI 251 (268)
Q Consensus 233 ~~~~i~~~f~~l~~~i~~~ 251 (268)
+|.|++++++.+.+.+...
T Consensus 144 ~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 144 HGRGIGDLLDAILELLPEE 162 (429)
T ss_pred cCCChHHHHHHHHHhcCcc
Confidence 9999999999999887553
No 192
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.79 E-value=2.7e-18 Score=161.69 Aligned_cols=158 Identities=11% Similarity=0.140 Sum_probs=114.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCC--CC-----CCC------CCCcceeeEEEEEEE-----CCeEEEEEEEeCCCcccc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDE--KE-----QGG------SPGEGLNMMDKTLLV-----RGARISYSIWEVTGDAKA 145 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~--~~-----~~~------~~t~~~~~~~~~~~~-----~~~~~~l~i~Dt~G~~~~ 145 (268)
-+|+++|..++|||||+.+|+... +. ..+ ..+.|.++....+.+ +++.+.+++|||+|+++|
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 489999999999999999997631 11 111 112344444433332 566789999999999999
Q ss_pred ccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCe
Q 041042 146 QDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNAT 225 (268)
Q Consensus 146 ~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (268)
...+..+++.+|++|+|+|+++....+....|..... .+.+.|+|+||+|+. ... ......++.+..++.
T Consensus 88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~lpiIvViNKiDl~----~a~---~~~v~~ei~~~lg~~ 157 (600)
T PRK05433 88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NDLEIIPVLNKIDLP----AAD---PERVKQEIEDVIGID 157 (600)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCC----ccc---HHHHHHHHHHHhCCC
Confidence 9889999999999999999998766666666654332 244567999999962 111 122233444555654
Q ss_pred ---EEEEcCCCCcCHHHHHHHHHHHHhcC
Q 041042 226 ---LFFSSATYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 226 ---~~~~Sa~~~~~i~~~f~~l~~~i~~~ 251 (268)
++++||++|.|+++++++|.+.+...
T Consensus 158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 158 ASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred cceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 89999999999999999999887654
No 193
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.79 E-value=7.2e-18 Score=141.71 Aligned_cols=150 Identities=18% Similarity=0.218 Sum_probs=99.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccc----c---chhhhhcCCc
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQ----D---HLPVACKDSI 157 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~---~~~~~~~~a~ 157 (268)
+|+++|.+|||||||++++.+........+....+.....+.+++ ..+++|||+|..... . ....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 799999999999999999998763222222222333344555555 458899999975432 1 1234689999
Q ss_pred EEEEEEeCCChh-hHHHHHHHHHHH-----------------------------------------HHh---C-------
Q 041042 158 AILFMFDLTSRC-TLKSVIRWYQQA-----------------------------------------RKC---N------- 185 (268)
Q Consensus 158 ~vilv~D~~~~~-s~~~~~~~~~~i-----------------------------------------~~~---~------- 185 (268)
++++|+|+++.+ ..+.+.+.++.. .++ +
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998765 344333333211 000 0
Q ss_pred ---------------CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHH
Q 041042 186 ---------------QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248 (268)
Q Consensus 186 ---------------~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~i 248 (268)
...|.++|+||+|+ .+ .+++..+++. ..++++||++|.|++++|+.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl---~~-------~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDL---IS-------IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccC---CC-------HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 01234699999996 21 2344455553 4589999999999999999998765
No 194
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.78 E-value=7.6e-19 Score=158.38 Aligned_cols=166 Identities=17% Similarity=0.211 Sum_probs=123.1
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....++|+++|+.||||||||..++.++|.+...+-...-... ..+.-..+...+.||+..+.-+.....-++.||++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVI 83 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC--CccCcCcCceEEEecccccchhHHHHHHHhhcCEE
Confidence 5567999999999999999999999999876655422111111 12222344578999987666556667788999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHhC---CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhC-C-eEEEEcCCC
Q 041042 160 LFMFDLTSRCTLKSVI-RWYQQARKCN---QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALN-A-TLFFSSATY 233 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~-~~~~~i~~~~---~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~Sa~~ 233 (268)
.+||+++++++++.+. .|+..+++.. .+.|+||||||+|+. ..... ........++.++. + ..++|||++
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~---~~~~~-s~e~~~~pim~~f~EiEtciecSA~~ 159 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNG---DNENN-SDEVNTLPIMIAFAEIETCIECSALT 159 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCc---ccccc-chhHHHHHHHHHhHHHHHHHhhhhhh
Confidence 9999999999999998 8999999987 677889999999973 22211 11223344444442 2 369999999
Q ss_pred CcCHHHHHHHHHHHHhcC
Q 041042 234 NINVNKILKFITAKLFDI 251 (268)
Q Consensus 234 ~~~i~~~f~~l~~~i~~~ 251 (268)
..|+.|+|+...+.++..
T Consensus 160 ~~n~~e~fYyaqKaVihP 177 (625)
T KOG1707|consen 160 LANVSELFYYAQKAVIHP 177 (625)
T ss_pred hhhhHhhhhhhhheeecc
Confidence 999999999988877654
No 195
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.78 E-value=6e-18 Score=132.12 Aligned_cols=153 Identities=16% Similarity=0.159 Sum_probs=101.7
Q ss_pred EEcCCCChHHHHHHHHhcCCCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccch-------hhhhcCCcEE
Q 041042 88 LLGDCHIGKTSFLEKYVGDEKE-QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHL-------PVACKDSIAI 159 (268)
Q Consensus 88 vlG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~~~a~~v 159 (268)
++|.+|+|||||++++.+..+. .....+.............. ...+.+|||+|...+.... ..+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987543 22222222222222322221 4568999999987764433 3478899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchH-HHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIA-SQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
++|+|.++..+..... |...... ...+.++|+||+|+ .......... ..........+++++++||+++.|++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~ 153 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE--RGKPVLLVLNKIDL---LPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGID 153 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh--cCCeEEEEEEcccc---CChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHH
Confidence 9999999988776654 3333322 34556899999997 2222111111 12233344457889999999999999
Q ss_pred HHHHHHHHH
Q 041042 239 KILKFITAK 247 (268)
Q Consensus 239 ~~f~~l~~~ 247 (268)
++++++.+.
T Consensus 154 ~l~~~l~~~ 162 (163)
T cd00880 154 ELREALIEA 162 (163)
T ss_pred HHHHHHHhh
Confidence 999999865
No 196
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.78 E-value=1.1e-17 Score=161.36 Aligned_cols=156 Identities=16% Similarity=0.177 Sum_probs=103.1
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccc--------cccchhhh
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKE-QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK--------AQDHLPVA 152 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~~ 152 (268)
...+|+++|.+|||||||+|+|++.... ....++++.+........++. .+.+|||+|.+. +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGT--DFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCE--EEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 3578999999999999999999987641 223343333433333344443 578999999763 23334567
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCC
Q 041042 153 CKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSAT 232 (268)
Q Consensus 153 ~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 232 (268)
++.+|++|+|+|+++.-+... ..|.+.++. .+.|+|+|+||+|+. . .. ......+....+ ..+++||+
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~--~~~pvIlV~NK~D~~----~--~~--~~~~~~~~lg~~-~~~~iSA~ 419 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR--AGKPVVLAVNKIDDQ----A--SE--YDAAEFWKLGLG-EPYPISAM 419 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh--cCCCEEEEEECcccc----c--ch--hhHHHHHHcCCC-CeEEEECC
Confidence 899999999999976422111 245555543 355668999999962 1 11 111122222223 35789999
Q ss_pred CCcCHHHHHHHHHHHHhcC
Q 041042 233 YNINVNKILKFITAKLFDI 251 (268)
Q Consensus 233 ~~~~i~~~f~~l~~~i~~~ 251 (268)
+|.||+++|+++++.+.+.
T Consensus 420 ~g~GI~eLl~~i~~~l~~~ 438 (712)
T PRK09518 420 HGRGVGDLLDEALDSLKVA 438 (712)
T ss_pred CCCCchHHHHHHHHhcccc
Confidence 9999999999999988653
No 197
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=6.8e-19 Score=131.89 Aligned_cols=161 Identities=18% Similarity=0.204 Sum_probs=118.6
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
.+.+++++|-.|+|||+++.++.-.+. ....||+|.+.. + +..++.++++||.+|+-..+..|+.||.+.|++|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve--~--v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVE--T--VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCcc--c--cccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 578999999999999999999876665 467788886654 3 33477889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHH-HHHHHHhC-CCCceEEEEeCCCCCCCCCccchh--chHHHHHHHHHHhCCeEEEEcCCCCcCH
Q 041042 162 MFDLTSRCTLKSVIRW-YQQARKCN-QTAIPIIIGTKFDDFIQLPIDLQW--TIASQARAYAKALNATLFFSSATYNINV 237 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~-~~~i~~~~-~~~~~ilvgnK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 237 (268)
|+|.+|++........ +..+.+.. .....+|++||.|. +....+ +...-..+-.+..-+.++++||.+|+|+
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~----~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gl 167 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDY----SGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGL 167 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccc----hhhhhHHHHHHHhChHHHhhheeEEEeeccccccCC
Confidence 9999999877655533 33333322 23555799999995 221111 1111111112233478999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 041042 238 NKILKFITAKLFDI 251 (268)
Q Consensus 238 ~~~f~~l~~~i~~~ 251 (268)
+++++|+.+.+...
T Consensus 168 d~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 168 DPAMDWLQRPLKSR 181 (182)
T ss_pred cHHHHHHHHHHhcc
Confidence 99999999877653
No 198
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.77 E-value=6.5e-18 Score=158.13 Aligned_cols=158 Identities=13% Similarity=0.135 Sum_probs=103.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCC----CCCcceeeEEEEEE------------ECCeEEEEEEEeCCCcccccc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGG----SPGEGLNMMDKTLL------------VRGARISYSIWEVTGDAKAQD 147 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~----~~t~~~~~~~~~~~------------~~~~~~~l~i~Dt~G~~~~~~ 147 (268)
--|+++|.+++|||||+++|.+..+.... ..++|..+...... ++.....+.+|||||++.|..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 35899999999999999999988765432 33444443322110 011112388999999999999
Q ss_pred chhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCcc-----------chhchHH
Q 041042 148 HLPVACKDSIAILFMFDLTS---RCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPID-----------LQWTIAS 213 (268)
Q Consensus 148 ~~~~~~~~a~~vilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~-----------~~~~~~~ 213 (268)
++..+++.+|++++|||+++ .++++.+..+ .. .+.|.||++||+|+....... ....+..
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~ 158 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ 158 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence 99999999999999999987 5566554322 22 245668999999974211100 0000000
Q ss_pred --------HHHHHHH------------Hh--CCeEEEEcCCCCcCHHHHHHHHHHH
Q 041042 214 --------QARAYAK------------AL--NATLFFSSATYNINVNKILKFITAK 247 (268)
Q Consensus 214 --------~~~~~~~------------~~--~~~~~~~Sa~~~~~i~~~f~~l~~~ 247 (268)
...++++ .+ .++++.+||++|+|+++++.++...
T Consensus 159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 0111221 11 3688999999999999999987643
No 199
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.76 E-value=4.3e-18 Score=155.31 Aligned_cols=157 Identities=11% Similarity=0.053 Sum_probs=103.8
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcC--CCCC-----------------------------CCCCCcceeeEEEEEEECC
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGD--EKEQ-----------------------------GGSPGEGLNMMDKTLLVRG 129 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~--~~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 129 (268)
...++|+++|..++|||||+.+|+.. .+.. ....+++.+.. ...+..
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~--~~~~~~ 82 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVA--HWKFET 82 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEE--EEEEcc
Confidence 34689999999999999999999752 1211 01112233333 333444
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHH--HHHHHHHHhCCCCceEEEEeCCCCCCCCCccc
Q 041042 130 ARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVI--RWYQQARKCNQTAIPIIIGTKFDDFIQLPIDL 207 (268)
Q Consensus 130 ~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~--~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~ 207 (268)
..+.+++|||+|+++|.......+..+|++|+|+|+++.+++.... .++. +.......+.|||+||+|+... ..+.
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~~~~iIVviNK~Dl~~~-~~~~ 160 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLGINQLIVAINKMDSVNY-DEEE 160 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcCCCeEEEEEEChhccCc-cHHH
Confidence 5577999999999988766666778999999999999876432211 1122 2222222334689999997310 1112
Q ss_pred hhchHHHHHHHHHHhC-----CeEEEEcCCCCcCHHHHH
Q 041042 208 QWTIASQARAYAKALN-----ATLFFSSATYNINVNKIL 241 (268)
Q Consensus 208 ~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~f 241 (268)
.....++++++++..+ ++++++||++|.|+.+.+
T Consensus 161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 2234677788888776 579999999999998744
No 200
>PRK10218 GTP-binding protein; Provisional
Probab=99.75 E-value=3.7e-17 Score=153.55 Aligned_cols=162 Identities=14% Similarity=0.134 Sum_probs=118.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc--CCCCCC------------CCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVG--DEKEQG------------GSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDH 148 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~--~~~~~~------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 148 (268)
..+|+++|..++|||||+.+|+. +.|... ...+.|.++..+...+....+++++|||+|+..|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 36899999999999999999986 334322 1235677777777777777789999999999999999
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHH-------
Q 041042 149 LPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKA------- 221 (268)
Q Consensus 149 ~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~------- 221 (268)
+..+++.+|++|+|+|+++....+. ..++..+.. .+.|+|++.||+|+. ........+++..+...
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~--~gip~IVviNKiD~~----~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA--YGLKPIVVINKVDRP----GARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH--cCCCEEEEEECcCCC----CCchhHHHHHHHHHHhccCccccc
Confidence 9999999999999999987533322 333333333 245668999999963 22222333444444322
Q ss_pred hCCeEEEEcCCCCc----------CHHHHHHHHHHHHhcC
Q 041042 222 LNATLFFSSATYNI----------NVNKILKFITAKLFDI 251 (268)
Q Consensus 222 ~~~~~~~~Sa~~~~----------~i~~~f~~l~~~i~~~ 251 (268)
..++++.+||++|. ++..+|+.|++.+...
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 35779999999998 5889999988887644
No 201
>COG1159 Era GTPase [General function prediction only]
Probab=99.75 E-value=4.5e-17 Score=137.27 Aligned_cols=174 Identities=19% Similarity=0.196 Sum_probs=117.6
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCC--CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccccc--------chh
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEK--EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQD--------HLP 150 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~ 150 (268)
.+.--|+++|.||||||||+|++++.+. .+....|+- ......++. ....+.+.||||-..-.. ...
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR-~~I~GI~t~--~~~QiIfvDTPGih~pk~~l~~~m~~~a~ 80 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTR-NRIRGIVTT--DNAQIIFVDTPGIHKPKHALGELMNKAAR 80 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhh-hheeEEEEc--CCceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 4456799999999999999999999874 333333332 221122222 356688999999554322 234
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhC-CeEEEE
Q 041042 151 VACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALN-ATLFFS 229 (268)
Q Consensus 151 ~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 229 (268)
..+.++|++++|.|+++...-. -...++.++. .+.|+|++.||+|. ...+ .........+..... ...+.+
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~-d~~il~~lk~--~~~pvil~iNKID~---~~~~--~~l~~~~~~~~~~~~f~~ivpi 152 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPG-DEFILEQLKK--TKTPVILVVNKIDK---VKPK--TVLLKLIAFLKKLLPFKEIVPI 152 (298)
T ss_pred HHhccCcEEEEEEeccccCCcc-HHHHHHHHhh--cCCCeEEEEEcccc---CCcH--HHHHHHHHHHHhhCCcceEEEe
Confidence 4578999999999998743321 1223444443 34577899999996 2221 111222333333333 368889
Q ss_pred cCCCCcCHHHHHHHHHHHHhcCccchhcccCCCCCC
Q 041042 230 SATYNINVNKILKFITAKLFDIPWTLERNLTIGEPI 265 (268)
Q Consensus 230 Sa~~~~~i~~~f~~l~~~i~~~~~~~~~~~~~~~~i 265 (268)
||++|.|++.+.+.+...+.+.++.++++..++.|.
T Consensus 153 SA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~ 188 (298)
T COG1159 153 SALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPE 188 (298)
T ss_pred eccccCCHHHHHHHHHHhCCCCCCcCChhhccCChH
Confidence 999999999999999999999999999988887764
No 202
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.75 E-value=1.1e-17 Score=152.77 Aligned_cols=159 Identities=12% Similarity=0.086 Sum_probs=100.8
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCC--CCCC------------------------C---CCCcceeeEEEEEEECCeE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDE--KEQG------------------------G---SPGEGLNMMDKTLLVRGAR 131 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~--~~~~------------------------~---~~t~~~~~~~~~~~~~~~~ 131 (268)
...++|+++|..++|||||+++|+... .... . ...-|.+.......+....
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 346899999999999999999998432 1000 0 0011333333333444456
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhc
Q 041042 132 ISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-IRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWT 210 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~ 210 (268)
+.+.+|||||+++|.......++.+|++|+|+|+++..++... ..++..+... ...++|||+||+|+... ..+....
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~-~~~~~~~ 161 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNY-DEKRYEE 161 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccc-cHHHHHH
Confidence 7799999999998866555557899999999999873222221 1222223222 22234689999997310 0111123
Q ss_pred hHHHHHHHHHHhC-----CeEEEEcCCCCcCHHHHH
Q 041042 211 IASQARAYAKALN-----ATLFFSSATYNINVNKIL 241 (268)
Q Consensus 211 ~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~f 241 (268)
..+++.++++..+ ++++++||++|.|+++.+
T Consensus 162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 4567777777666 468999999999999754
No 203
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.75 E-value=6.4e-17 Score=126.79 Aligned_cols=156 Identities=15% Similarity=0.186 Sum_probs=115.9
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCC--------CCCC----CCCcceeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEK--------EQGG----SPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQD 147 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~--------~~~~----~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 147 (268)
.....||+|+|.-++||||+++++..... ...+ ..|+..+|....+ + ....+.++|||||++|.-
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~--~-~~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL--D-EDTGVHLFGTPGQERFKF 83 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE--c-CcceEEEecCCCcHHHHH
Confidence 56678999999999999999999987652 1111 1344445443332 2 234577999999999999
Q ss_pred chhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHh--CCe
Q 041042 148 HLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKAL--NAT 225 (268)
Q Consensus 148 ~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~ 225 (268)
+|..+.+++.+.|++.|.+....| .....++.+....+ .|.+|..||.||+...+. ++++++.+.. +.+
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~-ip~vVa~NK~DL~~a~pp-------e~i~e~l~~~~~~~~ 154 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP-IPVVVAINKQDLFDALPP-------EKIREALKLELLSVP 154 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC-CCEEEEeeccccCCCCCH-------HHHHHHHHhccCCCc
Confidence 999999999999999999999998 44555555555443 344688999998544443 4444444444 889
Q ss_pred EEEEcCCCCcCHHHHHHHHHHH
Q 041042 226 LFFSSATYNINVNKILKFITAK 247 (268)
Q Consensus 226 ~~~~Sa~~~~~i~~~f~~l~~~ 247 (268)
.++++|..+++..+.++.+...
T Consensus 155 vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 155 VIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeeeecccchhHHHHHHHHHhh
Confidence 9999999999999999888765
No 204
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.74 E-value=7e-17 Score=152.46 Aligned_cols=156 Identities=15% Similarity=0.096 Sum_probs=105.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC---CCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD---EKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
-|.++|..++|||||+++|.+. .+.+.....+..+.....+...+ ...+.+|||||+++|.......+.++|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 4789999999999999999863 33333323333333222232222 2247899999999997666677889999999
Q ss_pred EEeCCC---hhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhC---CeEEEEcCCCC
Q 041042 162 MFDLTS---RCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALN---ATLFFSSATYN 234 (268)
Q Consensus 162 v~D~~~---~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Sa~~~ 234 (268)
|+|+++ +++.+.+. .+... +.+. |||+||+|+ .+.+......+++.++....+ ++++++||++|
T Consensus 81 VVda~eg~~~qT~ehl~----il~~l--gi~~iIVVlNKiDl---v~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG 151 (614)
T PRK10512 81 VVACDDGVMAQTREHLA----ILQLT--GNPMLTVALTKADR---VDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEG 151 (614)
T ss_pred EEECCCCCcHHHHHHHH----HHHHc--CCCeEEEEEECCcc---CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCC
Confidence 999987 34444332 22222 3344 699999997 222222333566677766655 68999999999
Q ss_pred cCHHHHHHHHHHHHhc
Q 041042 235 INVNKILKFITAKLFD 250 (268)
Q Consensus 235 ~~i~~~f~~l~~~i~~ 250 (268)
.|++++++.|.+....
T Consensus 152 ~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 152 RGIDALREHLLQLPER 167 (614)
T ss_pred CCCHHHHHHHHHhhcc
Confidence 9999999999865443
No 205
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.74 E-value=2.1e-17 Score=137.27 Aligned_cols=151 Identities=17% Similarity=0.310 Sum_probs=99.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCC-----------------CCCcceeeEEEEEEE-----CCeEEEEEEEeCCCc
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGG-----------------SPGEGLNMMDKTLLV-----RGARISYSIWEVTGD 142 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~~-----~~~~~~l~i~Dt~G~ 142 (268)
+|+++|..++|||||+++|+........ ....|.++....+.+ ++..+.+++|||+|+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875432210 011222332222222 356788999999999
Q ss_pred cccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCC---CCCccc----hhchHHHH
Q 041042 143 AKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFI---QLPIDL----QWTIASQA 215 (268)
Q Consensus 143 ~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~---~~~~~~----~~~~~~~~ 215 (268)
+.|......++..+|++++|+|+++..++.. ..|+..+... +.|.++|+||+|+.. .++... -....+++
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~~--~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~ 158 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAILE--GLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEV 158 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc--CCCEEEEEECcccCcccccCCHHHHHHHHHHHHHHH
Confidence 9998888889999999999999988776643 3454544332 355689999999631 111111 11123455
Q ss_pred HHHHHHhCC-------e----EEEEcCCCCcCHH
Q 041042 216 RAYAKALNA-------T----LFFSSATYNINVN 238 (268)
Q Consensus 216 ~~~~~~~~~-------~----~~~~Sa~~~~~i~ 238 (268)
..++...+. | +++.|++.+.+..
T Consensus 159 n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 159 NNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 556655543 2 6789999988765
No 206
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.74 E-value=1.7e-17 Score=135.07 Aligned_cols=160 Identities=13% Similarity=0.137 Sum_probs=106.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCC------------------CCCcceeeEEEEEEECCeEEEEEEEeCCCccc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGG------------------SPGEGLNMMDKTLLVRGARISYSIWEVTGDAK 144 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 144 (268)
..+|+++|..++|||||+.+|....-.... ...+..+.....+..+.....+.++||||+..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 478999999999999999999754311100 00111112222222124556789999999999
Q ss_pred cccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHH-HHHHHhC
Q 041042 145 AQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQAR-AYAKALN 223 (268)
Q Consensus 145 ~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~ 223 (268)
|.......++.+|++|+|+|+.+.-.-.. ...+..+... +.|.|+|.||+|+ . ........++.. .+.+..+
T Consensus 83 f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~--~~p~ivvlNK~D~---~-~~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 83 FIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL--GIPIIVVLNKMDL---I-EKELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT--T-SEEEEEETCTS---S-HHHHHHHHHHHHHHHHHHTT
T ss_pred eeecccceecccccceeeeeccccccccc-cccccccccc--ccceEEeeeeccc---h-hhhHHHHHHHHHHHhccccc
Confidence 98888788999999999999986544332 2233334332 3456899999997 2 222222333333 5555543
Q ss_pred ------CeEEEEcCCCCcCHHHHHHHHHHHHh
Q 041042 224 ------ATLFFSSATYNINVNKILKFITAKLF 249 (268)
Q Consensus 224 ------~~~~~~Sa~~~~~i~~~f~~l~~~i~ 249 (268)
++++.+||++|.|++++++.|.+.+.
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 57999999999999999999988753
No 207
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.73 E-value=4.7e-17 Score=152.91 Aligned_cols=160 Identities=13% Similarity=0.173 Sum_probs=116.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcC--CCCCCC------------CCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchh
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD--EKEQGG------------SPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLP 150 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~--~~~~~~------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 150 (268)
+|+++|..++|||||+.+|+.. .+.... ....|.++..+...+....+++++|||||+.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 6899999999999999999862 332211 11235556555555555667899999999999998889
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHH-------HhC
Q 041042 151 VACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAK-------ALN 223 (268)
Q Consensus 151 ~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~ 223 (268)
.+++.+|++++|+|+++. .......|+..+... +.|+|||+||+|+. ........+++..+.. ...
T Consensus 83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~--~ip~IVviNKiD~~----~a~~~~v~~ei~~l~~~~g~~~e~l~ 155 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL--GLKPIVVINKIDRP----SARPDEVVDEVFDLFAELGADDEQLD 155 (594)
T ss_pred HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC--CCCEEEEEECCCCC----CcCHHHHHHHHHHHHHhhcccccccc
Confidence 999999999999999863 344455666666553 45668999999962 2222233444444443 245
Q ss_pred CeEEEEcCCCCc----------CHHHHHHHHHHHHhcC
Q 041042 224 ATLFFSSATYNI----------NVNKILKFITAKLFDI 251 (268)
Q Consensus 224 ~~~~~~Sa~~~~----------~i~~~f~~l~~~i~~~ 251 (268)
++++.+||++|. |+..+|+.+++.+...
T Consensus 156 ~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 156 FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred CcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 789999999996 7999999999887654
No 208
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.73 E-value=1.2e-16 Score=150.13 Aligned_cols=158 Identities=12% Similarity=0.151 Sum_probs=101.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCC----CCcceeeEEEEEE--ECCeEE----------EEEEEeCCCccccc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGS----PGEGLNMMDKTLL--VRGARI----------SYSIWEVTGDAKAQ 146 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~----~t~~~~~~~~~~~--~~~~~~----------~l~i~Dt~G~~~~~ 146 (268)
...|+++|..++|||||+++|.+..+..... .++|.++...... ..+... .+.+|||||++.|.
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~ 85 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT 85 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence 4579999999999999999998765433322 2444433322110 011111 26899999999999
Q ss_pred cchhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccch-----------hchH
Q 041042 147 DHLPVACKDSIAILFMFDLTS---RCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQ-----------WTIA 212 (268)
Q Consensus 147 ~~~~~~~~~a~~vilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~-----------~~~~ 212 (268)
.++...++.+|++++|+|+++ .++++.+..+ .. .+.|.++++||+|+......... ....
T Consensus 86 ~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~ 159 (586)
T PRK04004 86 NLRKRGGALADIAILVVDINEGFQPQTIEAINIL----KR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQ 159 (586)
T ss_pred HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----HH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHH
Confidence 998888999999999999997 6666665432 22 24566799999997311110000 0000
Q ss_pred H-------HHHHHHHHh---------------CCeEEEEcCCCCcCHHHHHHHHHH
Q 041042 213 S-------QARAYAKAL---------------NATLFFSSATYNINVNKILKFITA 246 (268)
Q Consensus 213 ~-------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~~f~~l~~ 246 (268)
+ ++....... .++++++||++|.|++++++.+..
T Consensus 160 ~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 160 QELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 0 111111111 257899999999999999988764
No 209
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.73 E-value=8e-17 Score=145.93 Aligned_cols=164 Identities=15% Similarity=0.137 Sum_probs=104.2
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCC---CCC--CCcceeeEE----------------EEEEECC------eEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQ---GGS--PGEGLNMMD----------------KTLLVRG------ARISY 134 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~---~~~--~t~~~~~~~----------------~~~~~~~------~~~~l 134 (268)
..++|+++|..++|||||+++|.+..... ... -|+...+.. .....++ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 46899999999999999999997532111 000 011111110 0000011 13578
Q ss_pred EEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHH
Q 041042 135 SIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQ 214 (268)
Q Consensus 135 ~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~ 214 (268)
.+|||+|+++|..........+|++++|+|+++........+.+..+.... ..++|+|+||+|+ ...+......++
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g-i~~iIVvvNK~Dl---~~~~~~~~~~~~ 158 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG-IKNIVIVQNKIDL---VSKEKALENYEE 158 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC-CCeEEEEEEcccc---CCHHHHHHHHHH
Confidence 999999999998777777788999999999986431111122222222221 2335789999997 222222223455
Q ss_pred HHHHHHHh---CCeEEEEcCCCCcCHHHHHHHHHHHHh
Q 041042 215 ARAYAKAL---NATLFFSSATYNINVNKILKFITAKLF 249 (268)
Q Consensus 215 ~~~~~~~~---~~~~~~~Sa~~~~~i~~~f~~l~~~i~ 249 (268)
+.++.+.. +++++++||++|+|++++++.|...+.
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 55555543 678999999999999999999988664
No 210
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.73 E-value=6e-17 Score=133.99 Aligned_cols=152 Identities=14% Similarity=0.102 Sum_probs=93.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCC--------------------------CCC---CcceeeEEEEEEECCeEEEEE
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQG--------------------------GSP---GEGLNMMDKTLLVRGARISYS 135 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~--------------------------~~~---t~~~~~~~~~~~~~~~~~~l~ 135 (268)
+|+++|.+|+|||||+++|+...-... ..+ .-|.+.......+......+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999975321100 000 011122222222222344678
Q ss_pred EEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHH
Q 041042 136 IWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQ 214 (268)
Q Consensus 136 i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~ 214 (268)
+|||+|+++|.......++.+|++|+|+|+++...-+. ......+... ..++ |+|+||+|+... ..+.......+
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~--~~~~iIvviNK~D~~~~-~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLL--GIRHVVVAVNKMDLVDY-SEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc--CCCcEEEEEEchhcccC-CHHHHHHHHHH
Confidence 99999999886656667899999999999987532111 1222222222 2344 678999997311 01111223556
Q ss_pred HHHHHHHhCC---eEEEEcCCCCcCHHHH
Q 041042 215 ARAYAKALNA---TLFFSSATYNINVNKI 240 (268)
Q Consensus 215 ~~~~~~~~~~---~~~~~Sa~~~~~i~~~ 240 (268)
++.+.+.++. +++.+||++|.|+.+.
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 6777777774 4899999999999854
No 211
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.71 E-value=4.3e-16 Score=138.20 Aligned_cols=162 Identities=17% Similarity=0.192 Sum_probs=109.7
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCC-CCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccc-----------h
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDE-KEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDH-----------L 149 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-----------~ 149 (268)
..+||+++|.||||||||+|++++++ ......+.+..|.-...+..+++. +.+.||+|..+-..+ .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence 46999999999999999999999986 233444444455555666777777 568999995442211 1
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCc--cchhchHHHHHHHHHHh-CCeE
Q 041042 150 PVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPI--DLQWTIASQARAYAKAL-NATL 226 (268)
Q Consensus 150 ~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~~~-~~~~ 226 (268)
...+..+|++++|.|++..-+-++.+ ....+.+ ...+.|||.||+|+ +.. .......+++....... .++.
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~--~g~~~vIvvNKWDl---~~~~~~~~~~~k~~i~~~l~~l~~a~i 328 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLR-IAGLIEE--AGRGIVIVVNKWDL---VEEDEATMEEFKKKLRRKLPFLDFAPI 328 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH--cCCCeEEEEEcccc---CCchhhHHHHHHHHHHHHhccccCCeE
Confidence 23467899999999999877655533 1222222 25667899999997 332 11122233343333333 4688
Q ss_pred EEEcCCCCcCHHHHHHHHHHHHhcC
Q 041042 227 FFSSATYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 227 ~~~Sa~~~~~i~~~f~~l~~~i~~~ 251 (268)
+.+||++|.+++++|+.+.+.....
T Consensus 329 ~~iSA~~~~~i~~l~~~i~~~~~~~ 353 (444)
T COG1160 329 VFISALTGQGLDKLFEAIKEIYECA 353 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHh
Confidence 9999999999999999987654433
No 212
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.71 E-value=1.8e-16 Score=143.62 Aligned_cols=163 Identities=15% Similarity=0.163 Sum_probs=101.8
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCC---CC--CCCCcceeeEEEEE----------------EEC--C----eEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKE---QG--GSPGEGLNMMDKTL----------------LVR--G----ARI 132 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~---~~--~~~t~~~~~~~~~~----------------~~~--~----~~~ 132 (268)
....++|+++|..++|||||+.+|.+.... .. ..-|+...+....+ .++ + ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 344699999999999999999999653111 00 01122221111000 001 1 135
Q ss_pred EEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccch
Q 041042 133 SYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSR----CTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQ 208 (268)
Q Consensus 133 ~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~----~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~ 208 (268)
.+++|||||+++|..........+|++++|+|+++. ++.+.+.. +... ...++++|+||+|+ ...+..
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~----l~~~-~i~~iiVVlNK~Dl---~~~~~~ 157 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMA----LDII-GIKNIVIVQNKIDL---VSKERA 157 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc-CCCcEEEEEEeecc---ccchhH
Confidence 789999999988765444445567999999999853 33333322 2221 12245799999997 222222
Q ss_pred hchHHHHHHHHHHh---CCeEEEEcCCCCcCHHHHHHHHHHHHhc
Q 041042 209 WTIASQARAYAKAL---NATLFFSSATYNINVNKILKFITAKLFD 250 (268)
Q Consensus 209 ~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~f~~l~~~i~~ 250 (268)
....+++..+++.. +++++++||++|.|++++++.|...+..
T Consensus 158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 22244555555543 5789999999999999999999887643
No 213
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.71 E-value=2.2e-16 Score=132.78 Aligned_cols=184 Identities=12% Similarity=0.201 Sum_probs=117.9
Q ss_pred CCCceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccc------cc-----
Q 041042 78 ADNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK------AQ----- 146 (268)
Q Consensus 78 ~~~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~----- 146 (268)
.++.+.+.|+|||.||||||||.|.+++.+.......+. .+.....-.+......+.|+||+|.-. +.
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~-TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~ 145 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVH-TTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSV 145 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCcccccccccc-ceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHh
Confidence 457888999999999999999999999988644433321 122222223444566789999999321 11
Q ss_pred -cchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCC----------CCccchhc-hHHH
Q 041042 147 -DHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQ----------LPIDLQWT-IASQ 214 (268)
Q Consensus 147 -~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~----------~~~~~~~~-~~~~ 214 (268)
.-....+..||++++|+|+++....-. ...+..+.++. ..|-|+|.||.|...+ +.+..... ..+-
T Consensus 146 lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys-~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v 223 (379)
T KOG1423|consen 146 LQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS-KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV 223 (379)
T ss_pred hhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh-cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence 112334678999999999997332211 13344444443 4455999999996321 00100000 0011
Q ss_pred HHHHHH---------HhCC----eEEEEcCCCCcCHHHHHHHHHHHHhcCccchhcccCCCCC
Q 041042 215 ARAYAK---------ALNA----TLFFSSATYNINVNKILKFITAKLFDIPWTLERNLTIGEP 264 (268)
Q Consensus 215 ~~~~~~---------~~~~----~~~~~Sa~~~~~i~~~f~~l~~~i~~~~~~~~~~~~~~~~ 264 (268)
.+++.. ..|. .+|.+||++|+||+++-++|...+...+|.......+.++
T Consensus 224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s 286 (379)
T KOG1423|consen 224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEES 286 (379)
T ss_pred HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccC
Confidence 111111 1112 2788999999999999999999999999999988877664
No 214
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.70 E-value=1.9e-16 Score=140.53 Aligned_cols=149 Identities=16% Similarity=0.231 Sum_probs=104.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccc---------cchhhhh
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEK-EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQ---------DHLPVAC 153 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~~~~~~ 153 (268)
..|+++|.||||||||+|||++.+. ..+..|.+..|.......+.+.. +.+.||+|-+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 5799999999999999999999863 23344444555555666777766 8899999976432 2234557
Q ss_pred cCCcEEEEEEeCCChhhH--HHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCC-eEEEEc
Q 041042 154 KDSIAILFMFDLTSRCTL--KSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNA-TLFFSS 230 (268)
Q Consensus 154 ~~a~~vilv~D~~~~~s~--~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S 230 (268)
..||++|||+|....-+- +.+.+|+. ..+.|.|||+||+|- . ...+...+| -++|+ ..+.+|
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr-----~~~kpviLvvNK~D~-------~--~~e~~~~ef-yslG~g~~~~IS 146 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILR-----RSKKPVILVVNKIDN-------L--KAEELAYEF-YSLGFGEPVPIS 146 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHH-----hcCCCEEEEEEcccC-------c--hhhhhHHHH-HhcCCCCceEee
Confidence 899999999998663322 23334433 235677899999993 1 112222222 33444 688899
Q ss_pred CCCCcCHHHHHHHHHHHHh
Q 041042 231 ATYNINVNKILKFITAKLF 249 (268)
Q Consensus 231 a~~~~~i~~~f~~l~~~i~ 249 (268)
|..|.|+.++++.+++.+.
T Consensus 147 A~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 147 AEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred hhhccCHHHHHHHHHhhcC
Confidence 9999999999999999884
No 215
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.69 E-value=5e-16 Score=133.60 Aligned_cols=145 Identities=12% Similarity=0.132 Sum_probs=97.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCC----------CCCCcceeeEEEEEEECCeEEEEEEEeCCCccccc------
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQG----------GSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQ------ 146 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------ 146 (268)
.++|+|+|.+|+|||||+|+|++..+... ..+|++.......+..+|..+.+.+|||+|-..+.
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 58999999999999999999999876443 34566666666677778888999999999943211
Q ss_pred --------------------cchhhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCC
Q 041042 147 --------------------DHLPVACK--DSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLP 204 (268)
Q Consensus 147 --------------------~~~~~~~~--~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~ 204 (268)
..+...+. .+|+++++++.+.. .+.... ++.++......+.|+|+||+|+ +.
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D--~~~lk~l~~~v~vi~VinK~D~---l~ 157 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLD--IEFMKRLSKRVNIIPVIAKADT---LT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHH--HHHHHHHhccCCEEEEEECCCc---CC
Confidence 11113333 36677777776542 111111 2222222334566799999997 44
Q ss_pred ccchhchHHHHHHHHHHhCCeEEEEcCCC
Q 041042 205 IDLQWTIASQARAYAKALNATLFFSSATY 233 (268)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 233 (268)
.+......+.+.+.++.+++++|......
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 44444557888899999999999866543
No 216
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.69 E-value=5.4e-16 Score=143.38 Aligned_cols=157 Identities=15% Similarity=0.147 Sum_probs=120.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccc------cchhhhhc--
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQ------DHLPVACK-- 154 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~~~~~~-- 154 (268)
..+|+++|+||||||||.|++++......+.|.+.++.....+...+.+ +++.|.||.-... ...+.|+.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 4679999999999999999999998888888866655555555555555 7799999955432 33455553
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCC
Q 041042 155 DSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYN 234 (268)
Q Consensus 155 ~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 234 (268)
+.|++|-|.|++|.+.--.+.-.+.++ +.|.|++.|++|. .+++.+.-+.+++.+..|+|.+++||++|
T Consensus 81 ~~D~ivnVvDAtnLeRnLyltlQLlE~-----g~p~ilaLNm~D~------A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g 149 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYLTLQLLEL-----GIPMILALNMIDE------AKKRGIRIDIEKLSKLLGVPVVPTVAKRG 149 (653)
T ss_pred CCCEEEEEcccchHHHHHHHHHHHHHc-----CCCeEEEeccHhh------HHhcCCcccHHHHHHHhCCCEEEEEeecC
Confidence 569999999999977433222222222 5567899999996 55666788889999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCc
Q 041042 235 INVNKILKFITAKLFDIP 252 (268)
Q Consensus 235 ~~i~~~f~~l~~~i~~~~ 252 (268)
.|++++.+.+.+....+.
T Consensus 150 ~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 150 EGLEELKRAIIELAESKT 167 (653)
T ss_pred CCHHHHHHHHHHhccccc
Confidence 999999999987665554
No 217
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.69 E-value=6.4e-16 Score=137.50 Aligned_cols=153 Identities=15% Similarity=0.205 Sum_probs=106.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhhhh
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEK-EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDH--------LPVAC 153 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~ 153 (268)
.+|++++|.||||||||+|.|.+.+. .....+.+..|.....+.++|.. +.+.||+|...-... ....+
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p--v~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP--VRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE--EEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 58999999999999999999998762 23344544567766777788865 678999997643322 24457
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCC
Q 041042 154 KDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATY 233 (268)
Q Consensus 154 ~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 233 (268)
+.||.+++|+|.+...+-.+.. .+. ....+.+.++|.||.||..+.. ...+.-..+.+++.+||++
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~-~~~---~~~~~~~~i~v~NK~DL~~~~~----------~~~~~~~~~~~~i~iSa~t 360 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLA-LIE---LLPKKKPIIVVLNKADLVSKIE----------LESEKLANGDAIISISAKT 360 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhHH-HHH---hcccCCCEEEEEechhcccccc----------cchhhccCCCceEEEEecC
Confidence 8999999999999853222211 111 2334566689999999832111 1111112344689999999
Q ss_pred CcCHHHHHHHHHHHHhcC
Q 041042 234 NINVNKILKFITAKLFDI 251 (268)
Q Consensus 234 ~~~i~~~f~~l~~~i~~~ 251 (268)
|+|++++.+.|.+.+...
T Consensus 361 ~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 361 GEGLDALREAIKQLFGKG 378 (454)
T ss_pred ccCHHHHHHHHHHHHhhc
Confidence 999999999998877766
No 218
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.67 E-value=9.3e-16 Score=127.78 Aligned_cols=167 Identities=21% Similarity=0.199 Sum_probs=112.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCC---CCCCcceeeEEEEEEE-CCeEEEEEEEeCCCcccccc-----chhhhhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQG---GSPGEGLNMMDKTLLV-RGARISYSIWEVTGDAKAQD-----HLPVACKD 155 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~-----~~~~~~~~ 155 (268)
||+++|..++||||+.+.+.++-...+ ..+|+.++ .-.+ ....+.+++||+|||..+.. .....+++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve----~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~ 76 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVE----KSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSN 76 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEE----EEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCce----EEEEecCCCcEEEEEEcCCccccccccccccHHHHHhc
Confidence 899999999999999998876642211 22333322 2222 23456799999999986543 35677899
Q ss_pred CcEEEEEEeCCChh---hHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhch----HHHHHHHHHHhC---Ce
Q 041042 156 SIAILFMFDLTSRC---TLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTI----ASQARAYAKALN---AT 225 (268)
Q Consensus 156 a~~vilv~D~~~~~---s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~----~~~~~~~~~~~~---~~ 225 (268)
+.++|+|+|+.+.+ .+..+...++.+.+++++..+.|..+|+|+ ++++.+... .+.+.+.+...+ +.
T Consensus 77 v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~---l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~ 153 (232)
T PF04670_consen 77 VGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDL---LSEDEREEIFRDIQQRIRDELEDLGIEDIT 153 (232)
T ss_dssp ESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCC---S-HHHHHHHHHHHHHHHHHHHHHTT-TSEE
T ss_pred cCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeeccc---CCHHHHHHHHHHHHHHHHHHhhhccccceE
Confidence 99999999998444 344555667777888888777799999998 666555544 344445555566 77
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHHhcCccchhccc
Q 041042 226 LFFSSATYNINVNKILKFITAKLFDIPWTLERNL 259 (268)
Q Consensus 226 ~~~~Sa~~~~~i~~~f~~l~~~i~~~~~~~~~~~ 259 (268)
++.||.-+ +.+-++|..+++.++.+....++.+
T Consensus 154 ~~~TSI~D-~Sly~A~S~Ivq~LiP~~~~le~~L 186 (232)
T PF04670_consen 154 FFLTSIWD-ESLYEAWSKIVQKLIPNLSTLENLL 186 (232)
T ss_dssp EEEE-TTS-THHHHHHHHHHHTTSTTHCCCCCCC
T ss_pred EEeccCcC-cHHHHHHHHHHHHHcccHHHHHHHH
Confidence 88899877 6799999999999988776666544
No 219
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.67 E-value=9.2e-16 Score=117.55 Aligned_cols=134 Identities=19% Similarity=0.239 Sum_probs=92.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcc----ccccchhhhhcCCcEEE
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA----KAQDHLPVACKDSIAIL 160 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----~~~~~~~~~~~~a~~vi 160 (268)
||+++|..|+|||||+++|.+.+. .+..|..+.|. =.++||||.- .|..-.-....+||+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 899999999999999999988764 34444333332 1358999832 12222223345899999
Q ss_pred EEEeCCChhh-HHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCe-EEEEcCCCCcCHH
Q 041042 161 FMFDLTSRCT-LKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNAT-LFFSSATYNINVN 238 (268)
Q Consensus 161 lv~D~~~~~s-~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~ 238 (268)
+|.|+++..+ |.- .+... -..|+|-|.||+|+ . ......+.++++.+..|+. .|++|+.+|+||+
T Consensus 69 ll~dat~~~~~~pP--~fa~~-----f~~pvIGVITK~Dl----~--~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~ 135 (143)
T PF10662_consen 69 LLQDATEPRSVFPP--GFASM-----FNKPVIGVITKIDL----P--SDDANIERAKKWLKNAGVKEIFEVSAVTGEGIE 135 (143)
T ss_pred EEecCCCCCccCCc--hhhcc-----cCCCEEEEEECccC----c--cchhhHHHHHHHHHHcCCCCeEEEECCCCcCHH
Confidence 9999998754 211 11111 14567889999997 2 1233456778888888874 6889999999999
Q ss_pred HHHHHHH
Q 041042 239 KILKFIT 245 (268)
Q Consensus 239 ~~f~~l~ 245 (268)
++.++|-
T Consensus 136 eL~~~L~ 142 (143)
T PF10662_consen 136 ELKDYLE 142 (143)
T ss_pred HHHHHHh
Confidence 9999874
No 220
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.67 E-value=1.7e-15 Score=124.30 Aligned_cols=162 Identities=14% Similarity=0.143 Sum_probs=97.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCccee-eEEEEEEEC-CeEEEEEEEeCCCccccccchhhh-----hcC
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLN-MMDKTLLVR-GARISYSIWEVTGDAKAQDHLPVA-----CKD 155 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~-~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~-----~~~ 155 (268)
.+||+++|.+|||||||+|.+.+..+......+++.. .......+. .....+.+|||+|..........| +.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 3799999999999999999999866543333333310 000000111 112358899999975433222333 677
Q ss_pred CcEEEEEEeCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCCcc--------chhchHHHHHHH----HHHh
Q 041042 156 SIAILFMFDLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLPID--------LQWTIASQARAY----AKAL 222 (268)
Q Consensus 156 a~~vilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~--------~~~~~~~~~~~~----~~~~ 222 (268)
+|++++|.|. +|.... .|++.+... ..+.++|+||+|+.. +.. .+....++.++. ....
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~--~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDL--SNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHHh--CCCEEEEEecccchh--hhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 8988888432 343333 556666554 345689999999721 111 011222233222 2232
Q ss_pred C---CeEEEEcCC--CCcCHHHHHHHHHHHHhcCc
Q 041042 223 N---ATLFFSSAT--YNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 223 ~---~~~~~~Sa~--~~~~i~~~f~~l~~~i~~~~ 252 (268)
+ -++|-+|+. .+.|+..+.+.+...+.+.+
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 2 357889998 67899999999998887654
No 221
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.67 E-value=3.9e-15 Score=127.28 Aligned_cols=206 Identities=17% Similarity=0.148 Sum_probs=134.1
Q ss_pred hhhhhccCCCCCCCcCCCCCCCCCCCCccccCCCCCCCCCCCCccCCCCCCCCCCceeEEEE----EEcCCCChHHHHHH
Q 041042 26 EKLLMCSVGKPIRYRMLPRSTVTSPSPSVLESGLVPGTTVRPSLCHSHRHLDADNLVALKIS----LLGDCHIGKTSFLE 101 (268)
Q Consensus 26 ~~~~~~s~g~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~----vlG~~~vGKSsLi~ 101 (268)
+++++|.+|.+++....+.++. ..+|.....|.+ .+...-..++|++ ++|.||+|||||++
T Consensus 113 q~~~~akGG~GG~GN~~Fks~~-nrAP~~a~~G~~--------------Ge~r~v~LELKllADVGLVG~PNaGKSTlls 177 (369)
T COG0536 113 QRFLVAKGGRGGLGNAHFKSSV-NRAPRFATPGEP--------------GEERDLRLELKLLADVGLVGLPNAGKSTLLS 177 (369)
T ss_pred cEEEEEcCCCCCccchhhcCcc-cCCcccCCCCCC--------------CceEEEEEEEeeecccccccCCCCcHHHHHH
Confidence 6788899999987666555544 566666655553 2222344466655 99999999999999
Q ss_pred HHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccc----ccchhhh---hcCCcEEEEEEeCCChh---hH
Q 041042 102 KYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKA----QDHLPVA---CKDSIAILFMFDLTSRC---TL 171 (268)
Q Consensus 102 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----~~~~~~~---~~~a~~vilv~D~~~~~---s~ 171 (268)
.+...+..-..+|-+...-.--.+.+ ...-.+.+=|.||.-.- ..+-..| ++.+.+++.|+|++..+ -.
T Consensus 178 ~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~ 256 (369)
T COG0536 178 AVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPI 256 (369)
T ss_pred HHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHH
Confidence 99887643333331111111123333 22334778999984332 2333444 45788999999998665 36
Q ss_pred HHHHHHHHHHHHhCC---CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEE-EcCCCCcCHHHHHHHHHHH
Q 041042 172 KSVIRWYQQARKCNQ---TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFF-SSATYNINVNKILKFITAK 247 (268)
Q Consensus 172 ~~~~~~~~~i~~~~~---~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Sa~~~~~i~~~f~~l~~~ 247 (268)
++......++.+|.+ +.+.+||+||+|+. ...+........+.+..+...+. +||.+++|++++...+.+.
T Consensus 257 ~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~-----~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~ 331 (369)
T COG0536 257 EDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP-----LDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAEL 331 (369)
T ss_pred HHHHHHHHHHHHhhHHhccCceEEEEeccCCC-----cCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHH
Confidence 777777788888754 56679999999952 11222234444455555544332 9999999999999999888
Q ss_pred HhcCc
Q 041042 248 LFDIP 252 (268)
Q Consensus 248 i~~~~ 252 (268)
+.+..
T Consensus 332 l~~~~ 336 (369)
T COG0536 332 LEETK 336 (369)
T ss_pred HHHhh
Confidence 77775
No 222
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.66 E-value=5e-15 Score=125.23 Aligned_cols=198 Identities=15% Similarity=0.134 Sum_probs=129.9
Q ss_pred hhhhhccCCCCCCCcCCCCCCCCCCCCccccCCCCCCCCCCCCccCCCCCCCCCCceeEE----EEEEcCCCChHHHHHH
Q 041042 26 EKLLMCSVGKPIRYRMLPRSTVTSPSPSVLESGLVPGTTVRPSLCHSHRHLDADNLVALK----ISLLGDCHIGKTSFLE 101 (268)
Q Consensus 26 ~~~~~~s~g~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k----i~vlG~~~vGKSsLi~ 101 (268)
++.++|.+|.++++.+.+.+.. ..+|.....|.. .++.-...++| |-+||.||+|||||++
T Consensus 150 ~~~i~arGG~GG~gn~~fls~~-~r~p~~~~~G~~--------------G~e~~~~lELKsiadvGLVG~PNAGKSTLL~ 214 (366)
T KOG1489|consen 150 DRVIAARGGEGGKGNKFFLSNE-NRSPKFSKPGLN--------------GEERVIELELKSIADVGLVGFPNAGKSTLLN 214 (366)
T ss_pred cEEEEeecCCCCccceeecccc-ccCcccccCCCC--------------CceEEEEEEeeeecccceecCCCCcHHHHHH
Confidence 5678899988888777766633 222332222221 22222334455 4499999999999999
Q ss_pred HHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccc----ccchhhh---hcCCcEEEEEEeCCCh---hhH
Q 041042 102 KYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKA----QDHLPVA---CKDSIAILFMFDLTSR---CTL 171 (268)
Q Consensus 102 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----~~~~~~~---~~~a~~vilv~D~~~~---~s~ 171 (268)
.+...+.....++-+...-..-++.+++-. .+.+-|.||.-+- +.+-..| ++.|+..++|.|++.. ..+
T Consensus 215 als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~ 293 (366)
T KOG1489|consen 215 ALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPW 293 (366)
T ss_pred HhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHH
Confidence 998876443333311111111233333322 2888999995432 3344444 4578999999999988 788
Q ss_pred HHHHHHHHHHHHhC---CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCe-EEEEcCCCCcCHHHHHHHHHHH
Q 041042 172 KSVIRWYQQARKCN---QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNAT-LFFSSATYNINVNKILKFITAK 247 (268)
Q Consensus 172 ~~~~~~~~~i~~~~---~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~f~~l~~~ 247 (268)
+.++....++..+. .+.|.+||+||+|+ ++. ...-+.++++...-+ ++.+||++++|+.++.+.|.+.
T Consensus 294 ~~~~lL~~ELe~yek~L~~rp~liVaNKiD~----~ea----e~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 294 QQLQLLIEELELYEKGLADRPALIVANKIDL----PEA----EKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred HHHHHHHHHHHHHhhhhccCceEEEEeccCc----hhH----HHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhhc
Confidence 88887777777764 35667899999995 221 122357777777644 8999999999999999887653
No 223
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.66 E-value=2.5e-15 Score=126.53 Aligned_cols=113 Identities=12% Similarity=0.142 Sum_probs=80.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCC--------C-----CCC---CCcceeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKE--------Q-----GGS---PGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDH 148 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~--------~-----~~~---~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 148 (268)
.|+++|..|+|||||+++++...-. . ++. .+.|.++......+.....++++|||+|+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4789999999999999999753110 0 000 11223333334444445677999999999999888
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCC
Q 041042 149 LPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDF 200 (268)
Q Consensus 149 ~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~ 200 (268)
...+++.+|++++|+|+++.... ....|+..+.+. +.|.++++||+|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~--~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL--NIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc--CCCEEEEEECcccc
Confidence 88999999999999999886543 334555555543 44558999999975
No 224
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.66 E-value=5.6e-15 Score=120.82 Aligned_cols=150 Identities=11% Similarity=0.104 Sum_probs=97.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCC-------CC----CCC---CCcceeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEK-------EQ----GGS---PGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDH 148 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~-------~~----~~~---~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 148 (268)
.++|+++|..++|||||+++|+.... .. +.. ..-|.+.......+......+.+.||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 47899999999999999999975310 00 000 01233333333444445567889999999888776
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-eEEEEeCCCCCCCCCccc-hhchHHHHHHHHHHhC---
Q 041042 149 LPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAI-PIIIGTKFDDFIQLPIDL-QWTIASQARAYAKALN--- 223 (268)
Q Consensus 149 ~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~--- 223 (268)
....+..+|++++|+|++..-.-+ ....+..+... +.+ .|++.||+|+ ..++. .....+++..+....+
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~--~~~~iIvviNK~D~---~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV--GVPYIVVFLNKADM---VDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCcEEEEEeCCCC---CCcHHHHHHHHHHHHHHHHHhcccc
Confidence 777788999999999997643222 22233334332 334 3688999997 32222 1223556777766654
Q ss_pred --CeEEEEcCCCCcCHH
Q 041042 224 --ATLFFSSATYNINVN 238 (268)
Q Consensus 224 --~~~~~~Sa~~~~~i~ 238 (268)
++++.+||++|.|+.
T Consensus 156 ~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 156 DNTPIVRGSALKALEGD 172 (195)
T ss_pred cCCeEEEeeCccccCCC
Confidence 679999999999863
No 225
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=5.9e-15 Score=118.20 Aligned_cols=161 Identities=13% Similarity=0.120 Sum_probs=109.1
Q ss_pred CCceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 041042 79 DNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG----------DAKAQDH 148 (268)
Q Consensus 79 ~~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G----------~~~~~~~ 148 (268)
+......|+++|.+|||||||||.+++.+-......|.|.+.....+.++++ +.+.|.|| ++.+..+
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence 3444578999999999999999999997744555666677776666677665 67899999 4455666
Q ss_pred hhhhhcC---CcEEEEEEeCCChhhHH--HHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHH-HHHHHh
Q 041042 149 LPVACKD---SIAILFMFDLTSRCTLK--SVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQAR-AYAKAL 222 (268)
Q Consensus 149 ~~~~~~~---a~~vilv~D~~~~~s~~--~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~-~~~~~~ 222 (268)
...|++. -.++++++|+...-.-. ++-+|+.+. +.+++||+||+|. +............. .+....
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~-----~i~~~vv~tK~DK---i~~~~~~k~l~~v~~~l~~~~ 168 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL-----GIPVIVVLTKADK---LKKSERNKQLNKVAEELKKPP 168 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCeEEEEEcccc---CChhHHHHHHHHHHHHhcCCC
Confidence 6777754 45888899986543332 333555543 5566899999997 43322221112222 222222
Q ss_pred CCe--EEEEcCCCCcCHHHHHHHHHHHHhc
Q 041042 223 NAT--LFFSSATYNINVNKILKFITAKLFD 250 (268)
Q Consensus 223 ~~~--~~~~Sa~~~~~i~~~f~~l~~~i~~ 250 (268)
... ++..|+.++.|++++...|.+.+..
T Consensus 169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 169 PDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 232 6779999999999999998877654
No 226
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.65 E-value=2.4e-15 Score=125.56 Aligned_cols=156 Identities=11% Similarity=0.134 Sum_probs=96.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCC-----------------------CcceeeEEEEE-------------EEC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSP-----------------------GEGLNMMDKTL-------------LVR 128 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~-----------------------t~~~~~~~~~~-------------~~~ 128 (268)
||+++|+.++|||||+++|..+.|...... .+|.+...+.+ .+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999997666432110 01111100000 001
Q ss_pred CeEEEEEEEeCCCccccccchhhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCcc
Q 041042 129 GARISYSIWEVTGDAKAQDHLPVACK--DSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPID 206 (268)
Q Consensus 129 ~~~~~l~i~Dt~G~~~~~~~~~~~~~--~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~ 206 (268)
.....+.+.||||+++|.......+. .+|++++|+|+.....- .-..++..+... +.|+++|.||+|+ .+..
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~~~--~ip~ivvvNK~D~---~~~~ 154 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLALAL--NIPVFVVVTKIDL---APAN 154 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHHHc--CCCEEEEEECccc---cCHH
Confidence 12346889999999988654443443 68999999998765432 222334434332 3456899999997 3332
Q ss_pred chhchHHHHHHHHHH--------------------------hCCeEEEEcCCCCcCHHHHHHHHHH
Q 041042 207 LQWTIASQARAYAKA--------------------------LNATLFFSSATYNINVNKILKFITA 246 (268)
Q Consensus 207 ~~~~~~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~~i~~~f~~l~~ 246 (268)
......+++.++.+. ..+++|.+||.+|+|++++...|..
T Consensus 155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 222334444444331 1247899999999999999887643
No 227
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.64 E-value=2.6e-15 Score=125.21 Aligned_cols=152 Identities=11% Similarity=0.074 Sum_probs=91.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCC--CC------------------------CCCCC---CcceeeEEEEEEECCeEEEEE
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDE--KE------------------------QGGSP---GEGLNMMDKTLLVRGARISYS 135 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~--~~------------------------~~~~~---t~~~~~~~~~~~~~~~~~~l~ 135 (268)
.|+++|..++|||||+.+|+... .. .++.+ .-|.+.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 37999999999999999986321 00 00000 012222222223333456789
Q ss_pred EEeCCCccccccchhhhhcCCcEEEEEEeCCChh-------hHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCC-CCccc
Q 041042 136 IWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRC-------TLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQ-LPIDL 207 (268)
Q Consensus 136 i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~-------s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~-~~~~~ 207 (268)
+|||+|+..|.......+..+|++|+|+|+++.. ..+....| ...... ...++|+|+||+|+... .....
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~iiivvNK~Dl~~~~~~~~~ 158 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLARTL-GVKQLIVAVNKMDDVTVNWSEER 158 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHHc-CCCeEEEEEEccccccccccHHH
Confidence 9999999887666666678899999999998842 11112222 222222 22344689999997311 01111
Q ss_pred hhchHHHHHHHHHHhC-----CeEEEEcCCCCcCHH
Q 041042 208 QWTIASQARAYAKALN-----ATLFFSSATYNINVN 238 (268)
Q Consensus 208 ~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~ 238 (268)
.....+++..+.+..+ ++++.+||++|.|++
T Consensus 159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1223445555555554 569999999999987
No 228
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.5e-15 Score=116.78 Aligned_cols=160 Identities=16% Similarity=0.168 Sum_probs=117.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
.-|++++|-.|+|||||++.+.+++. ..+.||...+- .++.+.+ ++++.+|.+|+..-+..|..|+..+|++++.
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPTS--E~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTS--EELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccc-cccCCCcCCCh--HHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 35999999999999999999988875 56777665432 3444554 5688999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhC-----------CeEEEE
Q 041042 163 FDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALN-----------ATLFFS 229 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 229 (268)
+|+.|.+.|.+.+.-++.+.... ...|+++.|||+|.+....+++-+. .-.+.+++-..+ +..|.|
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~-~l~l~~~t~~~~~v~~~~~~~rp~evfmc 173 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRF-HLGLSNFTTGKGKVNLTDSNVRPLEVFMC 173 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHH-HHHHHHHhcccccccccCCCCCeEEEEEE
Confidence 99999999999987777765543 4566789999999754432211111 112222222211 246779
Q ss_pred cCCCCcCHHHHHHHHHHHH
Q 041042 230 SATYNINVNKILKFITAKL 248 (268)
Q Consensus 230 Sa~~~~~i~~~f~~l~~~i 248 (268)
|...+.+.-+.|.|+...+
T Consensus 174 si~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 174 SIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEEccCccceeeeehhhhc
Confidence 9998888888888876543
No 229
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.63 E-value=1e-14 Score=121.41 Aligned_cols=113 Identities=16% Similarity=0.257 Sum_probs=77.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcCC--CCCCCC------------CCcceeeEE--EEEEEC--------CeEEEEEEEeCC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDE--KEQGGS------------PGEGLNMMD--KTLLVR--------GARISYSIWEVT 140 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~--~~~~~~------------~t~~~~~~~--~~~~~~--------~~~~~l~i~Dt~ 140 (268)
.|+++|..++|||||+.+|+... ...... ..-|.+... ..+.+. +..+.+++|||+
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 58999999999999999997532 110000 000111111 122222 447889999999
Q ss_pred CccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCC
Q 041042 141 GDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDF 200 (268)
Q Consensus 141 G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~ 200 (268)
|++.|......+++.+|++++|+|+++..+.+....|. .... .+.++|||+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~-~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLR-QALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHH-HHHH--cCCCEEEEEECCCcc
Confidence 99999999999999999999999999876665433332 2222 235668999999973
No 230
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.61 E-value=1.2e-14 Score=131.44 Aligned_cols=150 Identities=12% Similarity=0.103 Sum_probs=96.3
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCC-------CC-----CC--CCCCcceeeEEEEEEECCeEEEEEEEeCCCcccc
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDE-------KE-----QG--GSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKA 145 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~-------~~-----~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 145 (268)
....++|+++|..++|||||+++|++.. +. .. ....-|.+.....+.++.....+.+|||||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 3446999999999999999999997420 10 00 0001233333344455555667889999999988
Q ss_pred ccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceE-EEEeCCCCCCCCCccc-hhchHHHHHHHHHHhC
Q 041042 146 QDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFDDFIQLPIDL-QWTIASQARAYAKALN 223 (268)
Q Consensus 146 ~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~i-lvgnK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~ 223 (268)
..........+|++++|+|+++...-+. .+.+..+... +.+++ ++.||+|+ .+.+. .....++++.+++..+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~--gi~~iIvvvNK~Dl---~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQV--GVPYIVVFLNKCDM---VDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCEEEEEEEeccc---CCHHHHHHHHHHHHHHHHHhcC
Confidence 6555555677899999999987322221 1222233322 34555 68999997 32221 1223457778887775
Q ss_pred -----CeEEEEcCCCCc
Q 041042 224 -----ATLFFSSATYNI 235 (268)
Q Consensus 224 -----~~~~~~Sa~~~~ 235 (268)
++++.+||++|.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 163 FPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCccCccEEECcccccc
Confidence 789999999875
No 231
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.61 E-value=6.2e-16 Score=116.67 Aligned_cols=113 Identities=14% Similarity=0.070 Sum_probs=84.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCC-CCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGS-PGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
+||+++|+.|||||+|+.++....|...+. +|++ +..+...+++.++++++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 599999999999999999998888765544 5544 334456678899999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 163 FDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
|+.++.++++.+ |...+...++..++ ++++||.|+. ++ . .++++.+..++++|+++|.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~----~~--------~-~~~~~~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLE----EE--------R-QVATEEGLEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhH----hh--------C-cCCHHHHHHHHHHhCCCcchhh
Confidence 999999999876 88877766554455 6999999961 11 1 2223333456788999999984
No 232
>PRK12735 elongation factor Tu; Reviewed
Probab=99.61 E-value=2.1e-14 Score=129.78 Aligned_cols=164 Identities=11% Similarity=0.110 Sum_probs=104.9
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcC-------CCC----CC---CCCCcceeeEEEEEEECCeEEEEEEEeCCCcccc
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGD-------EKE----QG---GSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKA 145 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~-------~~~----~~---~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 145 (268)
....++|+++|..++|||||+++|++. .+. .+ ....-|.+.......+......+.++||||+++|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 344699999999999999999999862 110 00 0001233333333444444556889999999888
Q ss_pred ccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceE-EEEeCCCCCCCCCccc-hhchHHHHHHHHHHhC
Q 041042 146 QDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFDDFIQLPIDL-QWTIASQARAYAKALN 223 (268)
Q Consensus 146 ~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~i-lvgnK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~ 223 (268)
.......+..+|++++|+|+.+...-+ ..+.+..+... +.+.| ++.||+|+. ..+. .....+++..+.+.++
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~~--gi~~iivvvNK~Dl~---~~~~~~~~~~~ei~~~l~~~~ 162 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV--GVPYIVVFLNKCDMV---DDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHHc--CCCeEEEEEEecCCc---chHHHHHHHHHHHHHHHHHcC
Confidence 665556677899999999998643222 22333333322 34545 679999972 2211 2223456777777654
Q ss_pred -----CeEEEEcCCCCc----------CHHHHHHHHHHHHh
Q 041042 224 -----ATLFFSSATYNI----------NVNKILKFITAKLF 249 (268)
Q Consensus 224 -----~~~~~~Sa~~~~----------~i~~~f~~l~~~i~ 249 (268)
++++++||++|. ++.++++.|...+.
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 678999999984 56777777766543
No 233
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.61 E-value=2.8e-14 Score=124.69 Aligned_cols=81 Identities=19% Similarity=0.278 Sum_probs=58.2
Q ss_pred EEEEcCCCChHHHHHHHHhcCCCCC------CCCCCcceeeEEEE---------------EEECC-eEEEEEEEeCCCc-
Q 041042 86 ISLLGDCHIGKTSFLEKYVGDEKEQ------GGSPGEGLNMMDKT---------------LLVRG-ARISYSIWEVTGD- 142 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~~~~~------~~~~t~~~~~~~~~---------------~~~~~-~~~~l~i~Dt~G~- 142 (268)
|+++|.+|||||||++++++..+.. ...|++|..+.... ..+++ ..+.+++|||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5799999999999999999987432 23444454433211 11233 3477999999997
Q ss_pred ---cccccchhhh---hcCCcEEEEEEeCC
Q 041042 143 ---AKAQDHLPVA---CKDSIAILFMFDLT 166 (268)
Q Consensus 143 ---~~~~~~~~~~---~~~a~~vilv~D~~ 166 (268)
+++..+...| +++||++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 5566666665 89999999999997
No 234
>PRK12736 elongation factor Tu; Reviewed
Probab=99.60 E-value=2.6e-14 Score=129.12 Aligned_cols=163 Identities=11% Similarity=0.107 Sum_probs=105.1
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCC-----------C---CCCCcceeeEEEEEEECCeEEEEEEEeCCCccccc
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQ-----------G---GSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQ 146 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~-----------~---~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 146 (268)
...++|+++|..++|||||+++|++..... + ....-|.+.......+......+.++||||+++|.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence 346899999999999999999997631100 0 00012333333344454455668899999999886
Q ss_pred cchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccc-hhchHHHHHHHHHHhC-
Q 041042 147 DHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDL-QWTIASQARAYAKALN- 223 (268)
Q Consensus 147 ~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~- 223 (268)
......+..+|++++|+|+++...-+. .+.+..+... +.+. ||+.||+|+ ...+. .....+++..+.+..+
T Consensus 90 ~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~--g~~~~IvviNK~D~---~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 90 KNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV--GVPYLVVFLNKVDL---VDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc--CCCEEEEEEEecCC---cchHHHHHHHHHHHHHHHHHhCC
Confidence 655555678999999999976322111 2223333332 3453 588999997 22211 1223456777777665
Q ss_pred ----CeEEEEcCCCCc--------CHHHHHHHHHHHHh
Q 041042 224 ----ATLFFSSATYNI--------NVNKILKFITAKLF 249 (268)
Q Consensus 224 ----~~~~~~Sa~~~~--------~i~~~f~~l~~~i~ 249 (268)
++++.+||++|. ++.++++.+.+.+.
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 579999999983 57788888776654
No 235
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.58 E-value=5.5e-14 Score=120.36 Aligned_cols=113 Identities=11% Similarity=0.127 Sum_probs=77.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCC-CC---------CCCC----------cceeeEEEEEEECCeEEEEEEEeCCCcc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKE-QG---------GSPG----------EGLNMMDKTLLVRGARISYSIWEVTGDA 143 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~-~~---------~~~t----------~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 143 (268)
-.|+++|.+|+|||||+++++...-. .. ...| .|.++......+....+++++|||+|+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 36999999999999999999742100 00 0000 1223333444555666789999999999
Q ss_pred ccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCC
Q 041042 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDD 199 (268)
Q Consensus 144 ~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl 199 (268)
+|......+++.+|++|+|+|+++...- ....++..... .+.|.++++||+|+
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~--~~~P~iivvNK~D~ 135 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL--RGIPIITFINKLDR 135 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh--cCCCEEEEEECCcc
Confidence 9888777889999999999999875332 22344444333 24456799999996
No 236
>PRK13351 elongation factor G; Reviewed
Probab=99.57 E-value=3.8e-14 Score=136.59 Aligned_cols=116 Identities=15% Similarity=0.183 Sum_probs=80.7
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCC-------------CCCCCC---CcceeeEEEEEEECCeEEEEEEEeCCCcccc
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEK-------------EQGGSP---GEGLNMMDKTLLVRGARISYSIWEVTGDAKA 145 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~-------------~~~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 145 (268)
...+|+|+|..++|||||+++|+...- ..++.+ ..+.+.......+......+++|||+|+.+|
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 457999999999999999999975310 000000 0111121112223334567999999999999
Q ss_pred ccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCC
Q 041042 146 QDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDF 200 (268)
Q Consensus 146 ~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~ 200 (268)
......+++.+|++|+|+|+++..+.+....| ..+... +.|.++|+||+|+.
T Consensus 87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~~--~~p~iiviNK~D~~ 138 (687)
T PRK13351 87 TGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADRY--GIPRLIFINKMDRV 138 (687)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHhc--CCCEEEEEECCCCC
Confidence 88899999999999999999988777665555 333332 45567999999975
No 237
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.54 E-value=7.1e-14 Score=128.74 Aligned_cols=158 Identities=12% Similarity=0.075 Sum_probs=94.3
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCC--CCCC-----------CCCC------------------cceeeEEEEEEEC
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDE--KEQG-----------GSPG------------------EGLNMMDKTLLVR 128 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~--~~~~-----------~~~t------------------~~~~~~~~~~~~~ 128 (268)
....++|+++|..++|||||+.+|+... .... ...+ -|.+.......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 3446999999999999999999997542 1100 0000 1112222222233
Q ss_pred CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccch
Q 041042 129 GARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQ 208 (268)
Q Consensus 129 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~ 208 (268)
.....+.||||||++.|.......+..+|++++|+|++..-.-+....| ..+.... ..+.||+.||+|+... ..+..
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~lg-~~~iIvvvNKiD~~~~-~~~~~ 180 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLLG-IKHLVVAVNKMDLVDY-SEEVF 180 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHhC-CCceEEEEEeeccccc-hhHHH
Confidence 3445688999999998865444557899999999998754211111111 1122222 2244789999997211 11111
Q ss_pred hchHHHHHHHHHHhC----CeEEEEcCCCCcCHHHH
Q 041042 209 WTIASQARAYAKALN----ATLFFSSATYNINVNKI 240 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~ 240 (268)
....++...+.+..+ ++++.+||++|.|+.++
T Consensus 181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 122344555555443 77999999999999865
No 238
>COG2262 HflX GTPases [General function prediction only]
Probab=99.54 E-value=3.1e-13 Score=118.50 Aligned_cols=159 Identities=14% Similarity=0.129 Sum_probs=107.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccc--ccchhhh------hc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKA--QDHLPVA------CK 154 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--~~~~~~~------~~ 154 (268)
...|.++|-.|+|||||+|++++........--...+-..+.+.+.+ ...+.+-||-|--+. ..+...| ..
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~ 270 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVK 270 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHhh
Confidence 46899999999999999999998764322222122344456666664 233668999994321 1122222 35
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCC
Q 041042 155 DSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATY 233 (268)
Q Consensus 155 ~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 233 (268)
.||.++.|+|++++...+.+..-.+-+.......+| |+|.||+|+ +.+.. ....+....+ ..+.+||++
T Consensus 271 ~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~---~~~~~------~~~~~~~~~~-~~v~iSA~~ 340 (411)
T COG2262 271 EADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDL---LEDEE------ILAELERGSP-NPVFISAKT 340 (411)
T ss_pred cCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccc---cCchh------hhhhhhhcCC-CeEEEEecc
Confidence 899999999999998777777666666666544455 799999996 33321 1111122222 589999999
Q ss_pred CcCHHHHHHHHHHHHhcCc
Q 041042 234 NINVNKILKFITAKLFDIP 252 (268)
Q Consensus 234 ~~~i~~~f~~l~~~i~~~~ 252 (268)
|.|++.+++.|.+.+....
T Consensus 341 ~~gl~~L~~~i~~~l~~~~ 359 (411)
T COG2262 341 GEGLDLLRERIIELLSGLR 359 (411)
T ss_pred CcCHHHHHHHHHHHhhhcc
Confidence 9999999999999887554
No 239
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.53 E-value=1.4e-13 Score=118.24 Aligned_cols=145 Identities=14% Similarity=0.083 Sum_probs=88.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCC------CCc----------ceeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGS------PGE----------GLNMMDKTLLVRGARISYSIWEVTGDAKAQDH 148 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~------~t~----------~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 148 (268)
+|+++|.+|+|||||+++++......... .|+ +.........+......+++|||+|+..|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 48999999999999999987532110000 000 11111111222223456889999999888778
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEE
Q 041042 149 LPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFF 228 (268)
Q Consensus 149 ~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (268)
...+++.+|++++|+|+++.........|. .+... +.|.++++||+|+. . ....+....+.+.++.+++.
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~~--~~p~iivvNK~D~~----~---~~~~~~~~~l~~~~~~~~~~ 150 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWE-FADEA--GIPRIIFINKMDRE----R---ADFDKTLAALQEAFGRPVVP 150 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHHc--CCCEEEEEECCccC----C---CCHHHHHHHHHHHhCCCeEE
Confidence 888999999999999998876554433332 33322 44567999999962 1 12233444555556655443
Q ss_pred --EcCCCCcCHHH
Q 041042 229 --SSATYNINVNK 239 (268)
Q Consensus 229 --~Sa~~~~~i~~ 239 (268)
+...+|.++..
T Consensus 151 ~~ip~~~~~~~~~ 163 (268)
T cd04170 151 LQLPIGEGDDFKG 163 (268)
T ss_pred EEecccCCCceeE
Confidence 44455544433
No 240
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.53 E-value=1.1e-13 Score=125.34 Aligned_cols=153 Identities=13% Similarity=0.106 Sum_probs=92.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCC--CCCC-----------CCC------------------CcceeeEEEEEEECCeEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDE--KEQG-----------GSP------------------GEGLNMMDKTLLVRGARI 132 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~--~~~~-----------~~~------------------t~~~~~~~~~~~~~~~~~ 132 (268)
++|+++|..++|||||+.+|+... .... ... .-|.+.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999996432 1000 000 011112222222333445
Q ss_pred EEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchH
Q 041042 133 SYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIA 212 (268)
Q Consensus 133 ~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~ 212 (268)
++.++||||+++|.......+..+|++|+|+|+.....-+....| ..+.... ....||+.||+|+... ..+......
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~~~-~~~iivviNK~D~~~~-~~~~~~~i~ 157 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASLLG-IRHVVLAVNKMDLVDY-DEEVFENIK 157 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHHcC-CCcEEEEEEecccccc-hHHHHHHHH
Confidence 788999999999866555678899999999998754322111112 1222222 2234689999997311 011111224
Q ss_pred HHHHHHHHHhC---CeEEEEcCCCCcCHHH
Q 041042 213 SQARAYAKALN---ATLFFSSATYNINVNK 239 (268)
Q Consensus 213 ~~~~~~~~~~~---~~~~~~Sa~~~~~i~~ 239 (268)
++...+.+..+ ++++.+||++|+|+++
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 45555555554 4699999999999986
No 241
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.53 E-value=3.4e-13 Score=121.29 Aligned_cols=83 Identities=18% Similarity=0.298 Sum_probs=58.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCC------CCcceeeEEEEE---------------EECC-eEEEEEEEeCCC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGS------PGEGLNMMDKTL---------------LVRG-ARISYSIWEVTG 141 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~------~t~~~~~~~~~~---------------~~~~-~~~~l~i~Dt~G 141 (268)
+||.++|.||||||||+|++++..+..... |++|..+....+ ..++ ..+.+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 699999999999999999999887643222 333332211100 0112 336799999999
Q ss_pred c----cccccchhhh---hcCCcEEEEEEeCC
Q 041042 142 D----AKAQDHLPVA---CKDSIAILFMFDLT 166 (268)
Q Consensus 142 ~----~~~~~~~~~~---~~~a~~vilv~D~~ 166 (268)
. +....+...| ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 3445566667 88999999999996
No 242
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.53 E-value=2.8e-13 Score=125.99 Aligned_cols=117 Identities=10% Similarity=0.079 Sum_probs=80.9
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhc--CCCCC---------------C---CCCCcceeeEEEEEEECCeEEEEEEEeCC
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVG--DEKEQ---------------G---GSPGEGLNMMDKTLLVRGARISYSIWEVT 140 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~--~~~~~---------------~---~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~ 140 (268)
....+|+|+|.+++|||||+++++. +.... + .....|.++....+.++...+.+++|||+
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 3457999999999999999999853 11100 0 00112444444455566667889999999
Q ss_pred CccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCC
Q 041042 141 GDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDF 200 (268)
Q Consensus 141 G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~ 200 (268)
|+..|......+++.+|++|+|+|+++.-. .....+++..+. .+.|.|+++||+|+.
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~--~~~PiivviNKiD~~ 145 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL--RDTPIFTFMNKLDRD 145 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh--cCCCEEEEEECcccc
Confidence 999988777778999999999999987421 223344444433 245567999999974
No 243
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.52 E-value=2.8e-13 Score=125.97 Aligned_cols=117 Identities=10% Similarity=0.083 Sum_probs=80.0
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhc--CCC------C---------CCCCC---CcceeeEEEEEEECCeEEEEEEEeCC
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVG--DEK------E---------QGGSP---GEGLNMMDKTLLVRGARISYSIWEVT 140 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~--~~~------~---------~~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~ 140 (268)
....+|+|+|..++|||||+++|+. +.. . .++.+ ..|.++......++...+.+++|||+
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3457999999999999999999963 111 0 00000 11333444444455556779999999
Q ss_pred CccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCC
Q 041042 141 GDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDF 200 (268)
Q Consensus 141 G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~ 200 (268)
|++.|......+++.+|++|+|+|+++...- ....++..... .+.|+++++||+|+.
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~--~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL--RDTPIFTFINKLDRD 144 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh--cCCCEEEEEECCccc
Confidence 9999988778889999999999999875322 23344444433 245567999999975
No 244
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=3.4e-13 Score=121.41 Aligned_cols=166 Identities=14% Similarity=0.159 Sum_probs=122.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCC--CCC-----CC------CCCcceeeEEEEE---EECCeEEEEEEEeCCCccccc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDE--KEQ-----GG------SPGEGLNMMDKTL---LVRGARISYSIWEVTGDAKAQ 146 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~--~~~-----~~------~~t~~~~~~~~~~---~~~~~~~~l~i~Dt~G~~~~~ 146 (268)
.-++.||-.-.-|||||..+++.-. ... +. ...-|.+...++. ..+|+.+.++++||||+-+|.
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs 139 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS 139 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence 3578888888999999999986421 111 00 0112444433332 224777999999999999999
Q ss_pred cchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeE
Q 041042 147 DHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATL 226 (268)
Q Consensus 147 ~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (268)
......+..|+++|+|+|++..---+.+..++..+.. +-.+|.|.||+|+ +......+..++.++....+.+.
T Consensus 140 ~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~---~L~iIpVlNKIDl----p~adpe~V~~q~~~lF~~~~~~~ 212 (650)
T KOG0462|consen 140 GEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA---GLAIIPVLNKIDL----PSADPERVENQLFELFDIPPAEV 212 (650)
T ss_pred ceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc---CCeEEEeeeccCC----CCCCHHHHHHHHHHHhcCCccce
Confidence 9999999999999999999876554555555444433 5567899999995 55555566777777777777889
Q ss_pred EEEcCCCCcCHHHHHHHHHHHHhcCccch
Q 041042 227 FFSSATYNINVNKILKFITAKLFDIPWTL 255 (268)
Q Consensus 227 ~~~Sa~~~~~i~~~f~~l~~~i~~~~~~~ 255 (268)
+.+|||+|.|++++++.+++.+.......
T Consensus 213 i~vSAK~G~~v~~lL~AII~rVPpP~~~~ 241 (650)
T KOG0462|consen 213 IYVSAKTGLNVEELLEAIIRRVPPPKGIR 241 (650)
T ss_pred EEEEeccCccHHHHHHHHHhhCCCCCCCC
Confidence 99999999999999999999988766433
No 245
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.52 E-value=5.3e-13 Score=113.89 Aligned_cols=160 Identities=16% Similarity=0.149 Sum_probs=105.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccc--cc---cchhh---hh-
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK--AQ---DHLPV---AC- 153 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~---~~~~~---~~- 153 (268)
..-|+|.|.||||||||++.+.+.+......|-+........+ +....++|++||||.=+ .. .+-.+ .+
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhf--e~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHF--ERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeee--ecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 3579999999999999999999988665555522222222222 33445799999999321 11 11111 11
Q ss_pred cCCcEEEEEEeCCChh--hHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHh-CCeEEEEc
Q 041042 154 KDSIAILFMFDLTSRC--TLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKAL-NATLFFSS 230 (268)
Q Consensus 154 ~~a~~vilv~D~~~~~--s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~S 230 (268)
.-+++|+++||.+..+ +.+.-...+++++..-. .|.++|.||+|+ .+ ....+++......- +.....++
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~----~~---~e~~~~~~~~~~~~~~~~~~~~~ 317 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDI----AD---EEKLEEIEASVLEEGGEEPLKIS 317 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccc----cc---hhHHHHHHHHHHhhcccccccee
Confidence 2358999999998766 45665677888877665 566799999995 21 12223333334444 44478899
Q ss_pred CCCCcCHHHHHHHHHHHHhcCc
Q 041042 231 ATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 231 a~~~~~i~~~f~~l~~~i~~~~ 252 (268)
+..+.+++.+-..+...+.+.-
T Consensus 318 ~~~~~~~d~~~~~v~~~a~~~~ 339 (346)
T COG1084 318 ATKGCGLDKLREEVRKTALEPL 339 (346)
T ss_pred eeehhhHHHHHHHHHHHhhchh
Confidence 9999999988888877766553
No 246
>CHL00071 tufA elongation factor Tu
Probab=99.52 E-value=4.8e-13 Score=121.48 Aligned_cols=151 Identities=10% Similarity=0.091 Sum_probs=96.2
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCC------C--------CCCCcceeeEEEEEEECCeEEEEEEEeCCCccccc
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQ------G--------GSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQ 146 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~------~--------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 146 (268)
...++|+++|..++|||||+++|++..-.. . ....-|.+.......+..+...+.+.||||+..|.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence 345999999999999999999998641100 0 00012333333333344445567899999998886
Q ss_pred cchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-eEEEEeCCCCCCCCCccc-hhchHHHHHHHHHHhC-
Q 041042 147 DHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAI-PIIIGTKFDDFIQLPIDL-QWTIASQARAYAKALN- 223 (268)
Q Consensus 147 ~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~- 223 (268)
......+..+|++++|+|+...-. ......+..+... +.+ .|++.||+|+ ...+. .....+++..+.+..+
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~--g~~~iIvvvNK~D~---~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 90 KNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV--GVPNIVVFLNKEDQ---VDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCEEEEEEEccCC---CCHHHHHHHHHHHHHHHHHHhCC
Confidence 666667789999999999976432 1222233333332 345 3588999997 32221 1223456777777654
Q ss_pred ----CeEEEEcCCCCcCH
Q 041042 224 ----ATLFFSSATYNINV 237 (268)
Q Consensus 224 ----~~~~~~Sa~~~~~i 237 (268)
++++.+||.+|.|+
T Consensus 164 ~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 164 PGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCCcceEEEcchhhcccc
Confidence 67899999998753
No 247
>PLN03126 Elongation factor Tu; Provisional
Probab=99.51 E-value=3.5e-13 Score=123.90 Aligned_cols=152 Identities=11% Similarity=0.091 Sum_probs=98.0
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCC------CCCCC--------CCCcceeeEEEEEEECCeEEEEEEEeCCCcccc
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDE------KEQGG--------SPGEGLNMMDKTLLVRGARISYSIWEVTGDAKA 145 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~------~~~~~--------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 145 (268)
....++|+++|..++|||||+++|+... ....+ ...-|.+.......++.....+.++|++|+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 4456899999999999999999998521 11100 111233333333333334557889999999998
Q ss_pred ccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-eEEEEeCCCCCCCCCccc-hhchHHHHHHHHHHh-
Q 041042 146 QDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAI-PIIIGTKFDDFIQLPIDL-QWTIASQARAYAKAL- 222 (268)
Q Consensus 146 ~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~Dl~~~~~~~~-~~~~~~~~~~~~~~~- 222 (268)
.......+..+|++++|+|+.+...-+ ..+++..+... +.+ .|++.||+|+ .+.+. .....+++..+.+..
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~--gi~~iIvvvNK~Dl---~~~~~~~~~i~~~i~~~l~~~g 231 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV--GVPNMVVFLNKQDQ---VDDEELLELVELEVRELLSSYE 231 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCeEEEEEecccc---cCHHHHHHHHHHHHHHHHHhcC
Confidence 766666678899999999988653322 23334444333 344 3588999997 32221 223355677777664
Q ss_pred ----CCeEEEEcCCCCcCH
Q 041042 223 ----NATLFFSSATYNINV 237 (268)
Q Consensus 223 ----~~~~~~~Sa~~~~~i 237 (268)
+++++.+||.+|.|+
T Consensus 232 ~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 232 FPGDDIPIISGSALLALEA 250 (478)
T ss_pred CCcCcceEEEEEccccccc
Confidence 467899999988543
No 248
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.50 E-value=2.7e-13 Score=124.00 Aligned_cols=156 Identities=12% Similarity=0.088 Sum_probs=102.2
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCC--CCC------------------------CCCC---CcceeeEEEEEEECCeE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDE--KEQ------------------------GGSP---GEGLNMMDKTLLVRGAR 131 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~--~~~------------------------~~~~---t~~~~~~~~~~~~~~~~ 131 (268)
...+.|+++|..++|||||+.+|+... ... +..+ .-|.+.......+....
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 345899999999999999999886421 000 0000 01222222233344556
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHH-------HHHHHHHHHHHhCCCCce-EEEEeCCCCCC-C
Q 041042 132 ISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLK-------SVIRWYQQARKCNQTAIP-IIIGTKFDDFI-Q 202 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~-------~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~-~ 202 (268)
..+.+.|+||+++|.......+..+|++|+|+|+++ ..|+ ...+.+..+.. .+.++ ||+.||+|+.. .
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~--~gi~~iIV~vNKmD~~~~~ 161 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFT--LGVKQMICCCNKMDATTPK 161 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHH--cCCCcEEEEEEcccCCchh
Confidence 778999999999998888888999999999999986 3343 22222222222 24444 68899999620 0
Q ss_pred CCccchhchHHHHHHHHHHhC-----CeEEEEcCCCCcCHHH
Q 041042 203 LPIDLQWTIASQARAYAKALN-----ATLFFSSATYNINVNK 239 (268)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 239 (268)
...++-..+.++++.++++.| ++|+++||++|+|+.+
T Consensus 162 ~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 162 YSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 111222334678888888877 6799999999999854
No 249
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.50 E-value=3e-13 Score=129.18 Aligned_cols=157 Identities=14% Similarity=0.103 Sum_probs=93.7
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCC--CCCC----------CCCC-------------------cceeeEEEEEEEC
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDE--KEQG----------GSPG-------------------EGLNMMDKTLLVR 128 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~--~~~~----------~~~t-------------------~~~~~~~~~~~~~ 128 (268)
....++|+++|.+++|||||+++|+... .... ...+ -|.+.......+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 3445899999999999999999998642 1100 0000 0111111112223
Q ss_pred CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccch
Q 041042 129 GARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQ 208 (268)
Q Consensus 129 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~ 208 (268)
.....+.++||||++.|.......+..+|++++|+|+++...-+. .+.+..+.... ..+.|||.||+|+.+. ..+..
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~~-~~~iivvvNK~D~~~~-~~~~~ 177 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLLG-IRHVVLAVNKMDLVDY-DQEVF 177 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHhC-CCeEEEEEEecccccc-hhHHH
Confidence 334467899999999886555556789999999999975432111 11122222221 2334689999997210 01111
Q ss_pred hchHHHHHHHHHHhCC---eEEEEcCCCCcCHHH
Q 041042 209 WTIASQARAYAKALNA---TLFFSSATYNINVNK 239 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~ 239 (268)
.....++.++.+..+. +++.+||++|.|+.+
T Consensus 178 ~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 178 DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1234455556666654 589999999999974
No 250
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.49 E-value=9.3e-14 Score=111.12 Aligned_cols=117 Identities=19% Similarity=0.250 Sum_probs=71.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEE-CCeEEEEEEEeCCCccccccchhh---hhcCCcEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLV-RGARISYSIWEVTGDAKAQDHLPV---ACKDSIAI 159 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~---~~~~a~~v 159 (268)
--|+++|++|+|||+|..+|..+.+.+...+. ..+ ....+ +.....+.+.|+||+++.+...-. +...+.+|
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n---~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENN---IAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEE---EECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCC---ceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 36899999999999999999998654444332 111 11112 223345889999999998764333 47889999
Q ss_pred EEEEeCCC-hhhHHHHHHHHHHHHHh---CCCCceE-EEEeCCCCCCCCC
Q 041042 160 LFMFDLTS-RCTLKSVIRWYQQARKC---NQTAIPI-IIGTKFDDFIQLP 204 (268)
Q Consensus 160 ilv~D~~~-~~s~~~~~~~~~~i~~~---~~~~~~i-lvgnK~Dl~~~~~ 204 (268)
|+|+|.+. ...+.++.+++-.+... ..+.+|| |++||.|+....+
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence 99999874 45566666555554333 3466675 8999999854433
No 251
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=5.7e-13 Score=120.37 Aligned_cols=157 Identities=10% Similarity=0.087 Sum_probs=107.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVR-GARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
.=|+++|.---|||||+..+-+..........+.-......+..+ +....+.|+||||++.|..|+..-..-+|++|||
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILV 85 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILV 85 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEE
Confidence 458899999999999999998887765555544444444455554 2334588999999999999999888889999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHh-CCCCceEEEEeCCCCCCCCCccchhchHHHHHHH---HHHhC--CeEEEEcCCCCcC
Q 041042 163 FDLTSRCTLKSVIRWYQQARKC-NQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAY---AKALN--ATLFFSSATYNIN 236 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~Sa~~~~~ 236 (268)
+|++|.-- .+..+.+... ..+.|.||+.||+|.. +........+.+++ .+.++ ..++.+||++|+|
T Consensus 86 Va~dDGv~----pQTiEAI~hak~a~vP~iVAiNKiDk~----~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 86 VAADDGVM----PQTIEAINHAKAAGVPIVVAINKIDKP----EANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEccCCcc----hhHHHHHHHHHHCCCCEEEEEecccCC----CCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 99987321 1222223322 2356667999999963 22211222222221 23332 4688999999999
Q ss_pred HHHHHHHHHHHH
Q 041042 237 VNKILKFITAKL 248 (268)
Q Consensus 237 i~~~f~~l~~~i 248 (268)
+++++..+.-..
T Consensus 158 i~eLL~~ill~a 169 (509)
T COG0532 158 IDELLELILLLA 169 (509)
T ss_pred HHHHHHHHHHHH
Confidence 999999976543
No 252
>PRK00049 elongation factor Tu; Reviewed
Probab=99.48 E-value=1.4e-12 Score=117.94 Aligned_cols=162 Identities=10% Similarity=0.105 Sum_probs=101.7
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCC---C--------C---CCCCcceeeEEEEEEECCeEEEEEEEeCCCccccc
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKE---Q--------G---GSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQ 146 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~---~--------~---~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 146 (268)
...++|+++|..++|||||+++|++.... . + ....-|.+.......+......+.+.||||+.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 44689999999999999999999863100 0 0 00012333333334444445567899999998886
Q ss_pred cchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceE-EEEeCCCCCCCCCccc-hhchHHHHHHHHHHhC-
Q 041042 147 DHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFDDFIQLPIDL-QWTIASQARAYAKALN- 223 (268)
Q Consensus 147 ~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~i-lvgnK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~- 223 (268)
......+..+|++++|+|+.+...- .....+..+... +.+.+ ++.||+|+. ..+. ......++..+....+
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~~--g~p~iiVvvNK~D~~---~~~~~~~~~~~~i~~~l~~~~~ 163 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV--GVPYIVVFLNKCDMV---DDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHHc--CCCEEEEEEeecCCc---chHHHHHHHHHHHHHHHHhcCC
Confidence 6666667899999999999764322 222333444332 34544 689999972 2111 1123445666665543
Q ss_pred ----CeEEEEcCCCCc----------CHHHHHHHHHHHH
Q 041042 224 ----ATLFFSSATYNI----------NVNKILKFITAKL 248 (268)
Q Consensus 224 ----~~~~~~Sa~~~~----------~i~~~f~~l~~~i 248 (268)
++++.+||++|. ++.++++.|...+
T Consensus 164 ~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 164 PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 678999999875 4566666665543
No 253
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.45 E-value=1e-12 Score=112.74 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=73.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcCC--CC-----------CCCCC---CcceeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDE--KE-----------QGGSP---GEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDH 148 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~--~~-----------~~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 148 (268)
.|+++|.+|+|||||+++++... .. .++.+ .-|.+.......+.-...++++|||||+..|...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 37899999999999999996421 00 00000 1122222222222223467889999999988888
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCC
Q 041042 149 LPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDD 199 (268)
Q Consensus 149 ~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl 199 (268)
+..+++.+|++|+|+|+++...-+. ...+..+... +.|.+++.||+|+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~--~~p~ivviNK~D~ 128 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRY--NVPRIAFVNKMDR 128 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHc--CCCEEEEEECCCC
Confidence 8889999999999999977432222 2333334332 3456899999996
No 254
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.45 E-value=1.9e-12 Score=96.87 Aligned_cols=104 Identities=12% Similarity=0.218 Sum_probs=66.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCC-C-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccc----------ccchhhh
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEK-E-QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKA----------QDHLPVA 152 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~ 152 (268)
||+|+|.+|+|||||+|.|++... . .....++ .......+.+++..+ .++||+|...- ..... .
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T-~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~-~ 76 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTT-RDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLE-Q 76 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSS-SSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHH-H
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccce-eeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHH-H
Confidence 699999999999999999998642 1 2222222 222334555666664 69999995431 11222 3
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeC
Q 041042 153 CKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTK 196 (268)
Q Consensus 153 ~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK 196 (268)
+..+|++++|+|.++... +.....+++++ ...+.++|.||
T Consensus 77 ~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 77 ISKSDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp HCTESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred HHHCCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence 478999999999877322 22233334442 35566799998
No 255
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.45 E-value=3.4e-12 Score=116.51 Aligned_cols=180 Identities=22% Similarity=0.377 Sum_probs=128.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEEC--CeEEEEEEEeCCCccccccchhhhhcCC----
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVR--GARISYSIWEVTGDAKAQDHLPVACKDS---- 156 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~a---- 156 (268)
.-.|+|+|+.++||||||.+|.+.+ .+.++.|.+|....+.-+ +...++.+|-..|...+..+.+..+...
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 3589999999999999999987643 455677777765544322 2345789999998777777766555432
Q ss_pred cEEEEEEeCCChhhH-HHHHHHHHHHHHh-------------------------------C----C------------C-
Q 041042 157 IAILFMFDLTSRCTL-KSVIRWYQQARKC-------------------------------N----Q------------T- 187 (268)
Q Consensus 157 ~~vilv~D~~~~~s~-~~~~~~~~~i~~~-------------------------------~----~------------~- 187 (268)
-.||+|.|.+.+..+ +.+.+|+..++.+ . + .
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 478899999998764 5666776654321 0 0 0
Q ss_pred --------------Cce-EEEEeCCCCCCCCCc------cchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHH
Q 041042 188 --------------AIP-IIIGTKFDDFIQLPI------DLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITA 246 (268)
Q Consensus 188 --------------~~~-ilvgnK~Dl~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~ 246 (268)
.+| +||++|+|....+.. +.-..+.+.++.+|-.+|+.+|.||++...|++-++.+|.+
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h 261 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILH 261 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHH
Confidence 135 599999996432221 12234577789999999999999999999999999999999
Q ss_pred HHhcCccchhcccCCCCCC
Q 041042 247 KLFDIPWTLERNLTIGEPI 265 (268)
Q Consensus 247 ~i~~~~~~~~~~~~~~~~i 265 (268)
.++..+.....+....+.|
T Consensus 262 ~l~~~~f~~~~~vv~~d~i 280 (472)
T PF05783_consen 262 RLYGFPFKTPAQVVERDAI 280 (472)
T ss_pred HhccCCCCCCceeeccccc
Confidence 9998886655555444443
No 256
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.45 E-value=3.1e-12 Score=104.81 Aligned_cols=160 Identities=13% Similarity=0.104 Sum_probs=98.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCC--CCcceeeEEEEEEECCeEEEEEEEeCCCcccccc--------c---hh
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGS--PGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQD--------H---LP 150 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~---~~ 150 (268)
++|+++|.+|||||||+|.+++........ +....+.......+++. .+.++||||-..... + ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~--~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGR--RVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCe--EEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999876322221 11112222233344554 578999999544321 1 11
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC---CCceEEEEeCCCCCCCCCccchhc----hHHHHHHHHHHhC
Q 041042 151 VACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQ---TAIPIIIGTKFDDFIQLPIDLQWT----IASQARAYAKALN 223 (268)
Q Consensus 151 ~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~---~~~~ilvgnK~Dl~~~~~~~~~~~----~~~~~~~~~~~~~ 223 (268)
....+.|++|+|.|+.+ -+-++ ...++.+.+... -...|+|.|++|. +....... .....+.+.+..+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~---l~~~~~~~~~~~~~~~l~~l~~~c~ 153 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDD---LEGGTLEDYLENSCEALKRLLEKCG 153 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccc---cCCCcHHHHHHhccHHHHHHHHHhC
Confidence 22467899999999876 32222 223344433322 2345789999995 32221111 1355677777777
Q ss_pred CeEEEEc-----CCCCcCHHHHHHHHHHHHhc
Q 041042 224 ATLFFSS-----ATYNINVNKILKFITAKLFD 250 (268)
Q Consensus 224 ~~~~~~S-----a~~~~~i~~~f~~l~~~i~~ 250 (268)
-.|+..+ +..+.+++++++.+.+.+.+
T Consensus 154 ~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 154 GRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 6665544 55678899999999888876
No 257
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.45 E-value=6.5e-13 Score=112.41 Aligned_cols=96 Identities=14% Similarity=0.145 Sum_probs=77.6
Q ss_pred cccccchhhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHH
Q 041042 143 AKAQDHLPVACKDSIAILFMFDLTSRC-TLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKA 221 (268)
Q Consensus 143 ~~~~~~~~~~~~~a~~vilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~ 221 (268)
++|..+.+.+++++|++++|||++++. +|+.+.+|+..+.. .+.+++||+||+||. ++ .....+.+..+. .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~---~~--~~~~~~~~~~~~-~ 95 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLL---DD--EDMEKEQLDIYR-N 95 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccC---CC--HHHHHHHHHHHH-H
Confidence 788889999999999999999999887 89999999987654 456778999999972 21 222234455454 5
Q ss_pred hCCeEEEEcCCCCcCHHHHHHHHHH
Q 041042 222 LNATLFFSSATYNINVNKILKFITA 246 (268)
Q Consensus 222 ~~~~~~~~Sa~~~~~i~~~f~~l~~ 246 (268)
.+++++++||++|.|++++|+.+..
T Consensus 96 ~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 96 IGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred CCCeEEEEecCCchhHHHHHhhhcC
Confidence 8899999999999999999998763
No 258
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.44 E-value=2.9e-12 Score=108.92 Aligned_cols=172 Identities=24% Similarity=0.377 Sum_probs=122.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEE--CCeEEEEEEEeCCCccccccchhhhhcCC----
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLV--RGARISYSIWEVTGDAKAQDHLPVACKDS---- 156 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a---- 156 (268)
.-.|+|+|+.++|||||+.++-+.+ .+.+.-|..|....+.- .+...++.+|-..|.--...+....+...
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 3579999999999999999998765 33444455554444332 23346788999999776666666555433
Q ss_pred cEEEEEEeCCChhh-HHHHHHHHHHHHHhCC-------------------------------------------------
Q 041042 157 IAILFMFDLTSRCT-LKSVIRWYQQARKCNQ------------------------------------------------- 186 (268)
Q Consensus 157 ~~vilv~D~~~~~s-~~~~~~~~~~i~~~~~------------------------------------------------- 186 (268)
-.||++.|.+++.. ++.+++|..-+.++..
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 37889999999954 6778888775543200
Q ss_pred ------------CCce-EEEEeCCCCCCCCC------ccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHH
Q 041042 187 ------------TAIP-IIIGTKFDDFIQLP------IDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAK 247 (268)
Q Consensus 187 ------------~~~~-ilvgnK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~ 247 (268)
-.++ +||.+|||....+. ++.-..+...++.||-.+|...+.+|+|...|++-++.+|+++
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr 288 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR 288 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence 0234 59999999632111 1122344677899999999999999999999999999999999
Q ss_pred HhcCccchhc
Q 041042 248 LFDIPWTLER 257 (268)
Q Consensus 248 i~~~~~~~~~ 257 (268)
++.-+-+...
T Consensus 289 ~yG~~fttpA 298 (473)
T KOG3905|consen 289 SYGFPFTTPA 298 (473)
T ss_pred hcCcccCCcc
Confidence 9887654444
No 259
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1e-12 Score=117.13 Aligned_cols=165 Identities=15% Similarity=0.188 Sum_probs=105.1
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccc-cc--------ch
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEK-EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKA-QD--------HL 149 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-~~--------~~ 149 (268)
-...++|+|+|.||||||||+|.|.+++. .....+.+..|-..-.++++|.+ +.+.||+|-.+- .. ..
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~--v~L~DTAGiRe~~~~~iE~~gI~rA 342 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVP--VRLSDTAGIREESNDGIEALGIERA 342 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeE--EEEEeccccccccCChhHHHhHHHH
Confidence 44468999999999999999999998863 23344433444444556677766 567999996541 11 12
Q ss_pred hhhhcCCcEEEEEEeC--CChhhHHHHHHHHHHHHHhC-------CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHH
Q 041042 150 PVACKDSIAILFMFDL--TSRCTLKSVIRWYQQARKCN-------QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAK 220 (268)
Q Consensus 150 ~~~~~~a~~vilv~D~--~~~~s~~~~~~~~~~i~~~~-------~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~ 220 (268)
+.-++.||++++|+|+ ++-++-..+.+.++...... ...+.|++.||+|+...+++..... ..+..
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-----~~~~~ 417 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-----VVYPS 417 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-----eeccc
Confidence 3446789999999999 55555444445555443321 1245679999999853332211100 11111
Q ss_pred HhC---C-eEEEEcCCCCcCHHHHHHHHHHHHhcC
Q 041042 221 ALN---A-TLFFSSATYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 221 ~~~---~-~~~~~Sa~~~~~i~~~f~~l~~~i~~~ 251 (268)
..+ . ...++|+++++|++.+.+.+.+.+...
T Consensus 418 ~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 418 AEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred cccCcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 111 2 245599999999999999888766543
No 260
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.43 E-value=7.4e-12 Score=106.62 Aligned_cols=154 Identities=18% Similarity=0.196 Sum_probs=102.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccc-------cchhhhhcCC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQ-------DHLPVACKDS 156 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~a 156 (268)
..++++|.|+||||||++.+.+.+-.....+-+........+.++| ..+|+.|+||.-.-. ...-...++|
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~A 141 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARNA 141 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeeccC
Confidence 6899999999999999999998765444333222333334555555 458899999843221 1223457899
Q ss_pred cEEEEEEeCCChhh-HHHHHHHHHHHH----H-------------------------------------h---CC-----
Q 041042 157 IAILFMFDLTSRCT-LKSVIRWYQQAR----K-------------------------------------C---NQ----- 186 (268)
Q Consensus 157 ~~vilv~D~~~~~s-~~~~~~~~~~i~----~-------------------------------------~---~~----- 186 (268)
|.+++|.|+....+ .+.+.+.++..- + + +.
T Consensus 142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir 221 (365)
T COG1163 142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIR 221 (365)
T ss_pred CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEe
Confidence 99999999986554 444443333220 0 0 00
Q ss_pred --------------C--Cce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHHh
Q 041042 187 --------------T--AIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLF 249 (268)
Q Consensus 187 --------------~--~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~i~ 249 (268)
+ -.| ++|.||+|+ .. .++...+.+.. .++.+||+.+.|++++.+.|.+.+-
T Consensus 222 ~dvTlDd~id~l~~nrvY~p~l~v~NKiD~---~~-------~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 222 EDVTLDDLIDALEGNRVYKPALYVVNKIDL---PG-------LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred cCCcHHHHHHHHhhcceeeeeEEEEecccc---cC-------HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 0 134 899999996 11 34455555555 7899999999999999999988764
Q ss_pred cC
Q 041042 250 DI 251 (268)
Q Consensus 250 ~~ 251 (268)
-.
T Consensus 290 li 291 (365)
T COG1163 290 LI 291 (365)
T ss_pred eE
Confidence 43
No 261
>PLN03127 Elongation factor Tu; Provisional
Probab=99.43 E-value=7.5e-12 Score=114.47 Aligned_cols=162 Identities=12% Similarity=0.114 Sum_probs=98.7
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcC------CCC----------CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcc
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGD------EKE----------QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~------~~~----------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 143 (268)
....++|+++|..++|||||+++|.+. ... .+... |.+.......+......+.+.||||++
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~r--GiTi~~~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKAR--GITIATAHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhc--CceeeeeEEEEcCCCeEEEEEECCCcc
Confidence 455789999999999999999999621 100 01112 333333344454455678899999998
Q ss_pred ccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccc-hhchHHHHHHHHHH
Q 041042 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDL-QWTIASQARAYAKA 221 (268)
Q Consensus 144 ~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~-~~~~~~~~~~~~~~ 221 (268)
+|..........+|++++|+|+++...-+ ..+.+..+... +.+. |++.||+|+ ...+. .....+++.++...
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~~--gip~iIvviNKiDl---v~~~~~~~~i~~~i~~~l~~ 209 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV--GVPSLVVFLNKVDV---VDDEELLELVEMELRELLSF 209 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc--CCCeEEEEEEeecc---CCHHHHHHHHHHHHHHHHHH
Confidence 87655545566799999999987643222 12222233322 3453 578999997 32211 11123345555544
Q ss_pred h-----CCeEEEEcCC---CCcC-------HHHHHHHHHHHHh
Q 041042 222 L-----NATLFFSSAT---YNIN-------VNKILKFITAKLF 249 (268)
Q Consensus 222 ~-----~~~~~~~Sa~---~~~~-------i~~~f~~l~~~i~ 249 (268)
. .++++.+||. +|.| +.++++.+.+.+.
T Consensus 210 ~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 210 YKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred hCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 3 3678888875 5555 6777777766543
No 262
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.42 E-value=3.4e-12 Score=116.68 Aligned_cols=166 Identities=14% Similarity=0.147 Sum_probs=103.2
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCC---CCCCCCC--C--cceeeEEE--------EE---EEC-C-----------
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDE---KEQGGSP--G--EGLNMMDK--------TL---LVR-G----------- 129 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~---~~~~~~~--t--~~~~~~~~--------~~---~~~-~----------- 129 (268)
....+.|.++|.-..|||||+..|.+-. +..+... | .|...... .. ..+ +
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 3456899999999999999999998632 1111111 1 12211100 00 000 0
Q ss_pred ----eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCC
Q 041042 130 ----ARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRC-TLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLP 204 (268)
Q Consensus 130 ----~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~ 204 (268)
....+.+.|+||++.|....-.....+|++++|+|+++.. .-+. .+.+..+.... -.+.|||.||+|+ .+
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl~i~~~lg-i~~iIVvlNKiDl---v~ 185 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHLAAVEIMK-LKHIIILQNKIDL---VK 185 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHHHHHHHcC-CCcEEEEEecccc---cC
Confidence 0236789999999998666666677999999999998631 1111 12222222221 2234789999997 32
Q ss_pred ccchhchHHHHHHHHHH---hCCeEEEEcCCCCcCHHHHHHHHHHHHhc
Q 041042 205 IDLQWTIASQARAYAKA---LNATLFFSSATYNINVNKILKFITAKLFD 250 (268)
Q Consensus 205 ~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~f~~l~~~i~~ 250 (268)
.+......+++.++.+. .+.+++.+||++|.|++++++.|.+.+..
T Consensus 186 ~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 186 EAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 22222334555555543 36789999999999999999999875543
No 263
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.42 E-value=3.1e-12 Score=113.59 Aligned_cols=162 Identities=12% Similarity=0.136 Sum_probs=111.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCC--C-----CCC------CCCCcceeeEEEEE--EE---CCeEEEEEEEeCCCcccc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDE--K-----EQG------GSPGEGLNMMDKTL--LV---RGARISYSIWEVTGDAKA 145 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~--~-----~~~------~~~t~~~~~~~~~~--~~---~~~~~~l~i~Dt~G~~~~ 145 (268)
-++.++-.-.-|||||..|++... + ..+ ....-|.+.....+ .+ +|+.+.|+++||||+-.|
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 356778888899999999986521 1 011 11112333333322 22 568899999999999999
Q ss_pred ccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCe
Q 041042 146 QDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNAT 225 (268)
Q Consensus 146 ~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (268)
.-.....+..|.+.++|+|++..-.-+.+.+.|..+.. +--+|-|.||+|| |......+.+++++..---...
T Consensus 90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~---~LeIiPViNKIDL----P~Adpervk~eIe~~iGid~~d 162 (603)
T COG0481 90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDL----PAADPERVKQEIEDIIGIDASD 162 (603)
T ss_pred EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc---CcEEEEeeecccC----CCCCHHHHHHHHHHHhCCCcch
Confidence 88888888999999999999986655666666665543 3345689999996 4333333344443332222234
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 226 LFFSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 226 ~~~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
.+.+|||+|.||+++++.|++.+....
T Consensus 163 av~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 163 AVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred heeEecccCCCHHHHHHHHHhhCCCCC
Confidence 688999999999999999999988766
No 264
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.40 E-value=6.6e-12 Score=123.60 Aligned_cols=148 Identities=9% Similarity=0.084 Sum_probs=92.8
Q ss_pred ChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECC-e----------E-----EEEEEEeCCCccccccchhhhhcCCc
Q 041042 94 IGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRG-A----------R-----ISYSIWEVTGDAKAQDHLPVACKDSI 157 (268)
Q Consensus 94 vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~----------~-----~~l~i~Dt~G~~~~~~~~~~~~~~a~ 157 (268)
++||||+..+.+..........+........+..+. . . -.+.||||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 459999999988776544443332222222333321 0 0 12789999999999888888889999
Q ss_pred EEEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccc-----------hhchHHHHH-------
Q 041042 158 AILFMFDLTS---RCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDL-----------QWTIASQAR------- 216 (268)
Q Consensus 158 ~vilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~-----------~~~~~~~~~------- 216 (268)
++++|+|+++ ..+++.+.. +... +.|.|+|+||+|+........ .....++..
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~~----lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~ 625 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAINI----LRQY--KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI 625 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHHH----HHHc--CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 9999999987 556655442 2222 446689999999842111000 000111111
Q ss_pred -HHHH------------Hh--CCeEEEEcCCCCcCHHHHHHHHHHH
Q 041042 217 -AYAK------------AL--NATLFFSSATYNINVNKILKFITAK 247 (268)
Q Consensus 217 -~~~~------------~~--~~~~~~~Sa~~~~~i~~~f~~l~~~ 247 (268)
++++ .+ .++++.+||++|+||++++..|...
T Consensus 626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 1111 11 3578999999999999999877643
No 265
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.40 E-value=9.8e-12 Score=112.90 Aligned_cols=168 Identities=11% Similarity=0.093 Sum_probs=127.6
Q ss_pred CCCCCceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q 041042 76 LDADNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKD 155 (268)
Q Consensus 76 ~~~~~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 155 (268)
........+++.++|..++|||.|++.|+++.+...+..+....+....+.+.|+...+.+-|.+-. ....+...- ..
T Consensus 418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~ 495 (625)
T KOG1707|consen 418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AA 495 (625)
T ss_pred cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ce
Confidence 3444667899999999999999999999999988877778888887778888888888888888765 322232222 77
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCe-EEEEcCCCC
Q 041042 156 SIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNAT-LFFSSATYN 234 (268)
Q Consensus 156 a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~ 234 (268)
||++.++||.+++.||+.+...++.-... ...|.++|++|+|| .+..++...+. .+++++++++ -...|.++.
T Consensus 496 cDv~~~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dl----De~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~ 569 (625)
T KOG1707|consen 496 CDVACLVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADL----DEVPQRYSIQP-DEFCRQLGLPPPIHISSKTL 569 (625)
T ss_pred eeeEEEecccCCchHHHHHHHHHHHhhhc-cCCceEEEeecccc----chhhhccCCCh-HHHHHhcCCCCCeeeccCCC
Confidence 99999999999999999988766654443 45555799999996 33333333333 8899999986 455777753
Q ss_pred cCHHHHHHHHHHHHhcCc
Q 041042 235 INVNKILKFITAKLFDIP 252 (268)
Q Consensus 235 ~~i~~~f~~l~~~i~~~~ 252 (268)
.. .++|..|+..+...+
T Consensus 570 ~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 570 SS-NELFIKLATMAQYPH 586 (625)
T ss_pred CC-chHHHHHHHhhhCCC
Confidence 33 899999998777665
No 266
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.40 E-value=6.8e-12 Score=114.84 Aligned_cols=157 Identities=11% Similarity=0.089 Sum_probs=98.3
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcC--CCC------------------------CCCCC---CcceeeEEEEEEECCeE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGD--EKE------------------------QGGSP---GEGLNMMDKTLLVRGAR 131 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~--~~~------------------------~~~~~---t~~~~~~~~~~~~~~~~ 131 (268)
...++|+++|..++|||||+.+|+.. ... .+..+ .-|.+.......+....
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 44689999999999999999998752 110 00000 01222222223344455
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChh---hH---HHHHHHHHHHHHhCCCCce-EEEEeCCCCCC-CC
Q 041042 132 ISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRC---TL---KSVIRWYQQARKCNQTAIP-IIIGTKFDDFI-QL 203 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~---s~---~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~-~~ 203 (268)
..+.|+||||+++|.......+..+|++++|+|+++.. .| ....+-+..+... ..+. ||+.||+|... ..
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~--gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL--GVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc--CCCeEEEEEEccccccchh
Confidence 67899999999999777777788999999999997642 11 1112212222221 3444 58999999421 01
Q ss_pred CccchhchHHHHHHHHHHhC-----CeEEEEcCCCCcCHHH
Q 041042 204 PIDLQWTIASQARAYAKALN-----ATLFFSSATYNINVNK 239 (268)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 239 (268)
+++.-....+++..+....+ ++++.+||.+|+|+.+
T Consensus 163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 12223344566666666554 5689999999999864
No 267
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.38 E-value=7.2e-12 Score=120.79 Aligned_cols=114 Identities=15% Similarity=0.120 Sum_probs=76.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCC----CCCCC------------CcceeeEEEEEEECCeEEEEEEEeCCCccccc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKE----QGGSP------------GEGLNMMDKTLLVRGARISYSIWEVTGDAKAQ 146 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~----~~~~~------------t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 146 (268)
-.+|+|+|..++|||||+++|+...-. ..... .-|.+.......+.-...++++|||+|+.+|.
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~ 89 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT 89 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence 458999999999999999999642100 00000 01222222222222234678999999999988
Q ss_pred cchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCC
Q 041042 147 DHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDD 199 (268)
Q Consensus 147 ~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl 199 (268)
.....+++.+|++|+|+|+++....+...-| ..+... +.|.++++||+|+
T Consensus 90 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~--~~p~ivviNK~D~ 139 (689)
T TIGR00484 90 VEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANRY--EVPRIAFVNKMDK 139 (689)
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHHc--CCCEEEEEECCCC
Confidence 8888899999999999999886555443333 333332 4566899999997
No 268
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.37 E-value=1.3e-12 Score=116.58 Aligned_cols=164 Identities=13% Similarity=0.159 Sum_probs=113.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccc----ccchhhh-----hc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKA----QDHLPVA-----CK 154 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----~~~~~~~-----~~ 154 (268)
-.++|+|.||||||||++.+..........+.+...+... .++.+...+++.||||.-.. +....+. ..
T Consensus 169 rTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vG--H~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAH 246 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVG--HLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAH 246 (620)
T ss_pred CeEEEecCCCCCcHhhcccccccccccCCcccccchhhhh--hhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHH
Confidence 4789999999999999999887766555554322222211 22445677899999994321 1111111 11
Q ss_pred CCcEEEEEEeCCChhh--HHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhch-HHHHHHHHHHhCCeEEEEcC
Q 041042 155 DSIAILFMFDLTSRCT--LKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTI-ASQARAYAKALNATLFFSSA 231 (268)
Q Consensus 155 ~a~~vilv~D~~~~~s--~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Sa 231 (268)
--.+|+++.|++..+. .+.--..++.|+..-.+.|.|+|.||+|+ +..+.-... .+-.+.+...-+++++++|+
T Consensus 247 LraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~---m~~edL~~~~~~ll~~~~~~~~v~v~~tS~ 323 (620)
T KOG1490|consen 247 LRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDA---MRPEDLDQKNQELLQTIIDDGNVKVVQTSC 323 (620)
T ss_pred hhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccc---cCccccCHHHHHHHHHHHhccCceEEEecc
Confidence 2258999999998874 44444778888877778888999999997 333333333 34445555556699999999
Q ss_pred CCCcCHHHHHHHHHHHHhcCc
Q 041042 232 TYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 232 ~~~~~i~~~f~~l~~~i~~~~ 252 (268)
.+.+||.++....++.++..+
T Consensus 324 ~~eegVm~Vrt~ACe~LLa~R 344 (620)
T KOG1490|consen 324 VQEEGVMDVRTTACEALLAAR 344 (620)
T ss_pred cchhceeeHHHHHHHHHHHHH
Confidence 999999999999998887765
No 269
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=8.7e-12 Score=100.18 Aligned_cols=158 Identities=16% Similarity=0.182 Sum_probs=98.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhc---CCcEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACK---DSIAIL 160 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~---~a~~vi 160 (268)
-.|+++|..++|||+|..++..+.+...+.+. ..+ .....++... ..+.|.||+.+.+.-...++. .+-+++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi-epn--~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSI-EPN--EATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeee-ccc--eeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 36899999999999999999888654333221 111 1222233333 678999999998766666666 789999
Q ss_pred EEEeCCC-hhhHHHHHHHHHHHHHhC---CCCceE-EEEeCCCCCCCCCccchhch-HHHHHHHHH--------------
Q 041042 161 FMFDLTS-RCTLKSVIRWYQQARKCN---QTAIPI-IIGTKFDDFIQLPIDLQWTI-ASQARAYAK-------------- 220 (268)
Q Consensus 161 lv~D~~~-~~s~~~~~~~~~~i~~~~---~~~~~i-lvgnK~Dl~~~~~~~~~~~~-~~~~~~~~~-------------- 220 (268)
+|+|..- .....++.+++-.+...+ .+.+|| |+.||.|+.-.-+.+..+.. +.++..+-.
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~ 193 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA 193 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 9999642 333444544444443332 566775 88999998533232211111 222222111
Q ss_pred ------------------HhCCeEEEEcCCCCcCHHHHHHHHHHH
Q 041042 221 ------------------ALNATLFFSSATYNINVNKILKFITAK 247 (268)
Q Consensus 221 ------------------~~~~~~~~~Sa~~~~~i~~~f~~l~~~ 247 (268)
...+.|.++|++++ +++++-+|+.+.
T Consensus 194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 12245888999999 899999998765
No 270
>PRK12740 elongation factor G; Reviewed
Probab=99.35 E-value=1.5e-11 Score=118.43 Aligned_cols=107 Identities=18% Similarity=0.143 Sum_probs=72.1
Q ss_pred EcCCCChHHHHHHHHhcCCC--------CCC-----C-----CCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchh
Q 041042 89 LGDCHIGKTSFLEKYVGDEK--------EQG-----G-----SPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLP 150 (268)
Q Consensus 89 lG~~~vGKSsLi~~l~~~~~--------~~~-----~-----~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 150 (268)
+|..++|||||+++|+...- ... + ...+........+.. ..+.+++|||+|+..|.....
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~--~~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW--KGHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE--CCEEEEEEECCCcHHHHHHHH
Confidence 69999999999999954311 000 0 011111222223333 346789999999998877788
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCC
Q 041042 151 VACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDF 200 (268)
Q Consensus 151 ~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~ 200 (268)
.+++.+|++++|+|+++.........|. .+.. .+.|.++|+||+|+.
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~--~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVWR-QAEK--YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH--cCCCEEEEEECCCCC
Confidence 8899999999999998877666544443 3332 245668999999974
No 271
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.6e-11 Score=110.75 Aligned_cols=160 Identities=12% Similarity=0.090 Sum_probs=107.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLV-RGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
.-=|.|+|.-.-|||||+..|-+..........+........+.. +| -.+.|.||||+..|..|+..-..-+|++++
T Consensus 153 pPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G--~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 153 PPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG--KSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC--CEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 346889999999999999999887765544443322222333444 44 457789999999999999988888999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHh-CCCCceEEEEeCCCCCCCCCccchhchHHHHHH---HHHHhC--CeEEEEcCCCCc
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKC-NQTAIPIIIGTKFDDFIQLPIDLQWTIASQARA---YAKALN--ATLFFSSATYNI 235 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~Sa~~~~ 235 (268)
|+.+.|.-- ....+.|... ..+.|+||..||+|.+ +.....+..++.. ..+.+| ++.+++||++|.
T Consensus 231 VVAadDGVm----pQT~EaIkhAk~A~VpiVvAinKiDkp----~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~ 302 (683)
T KOG1145|consen 231 VVAADDGVM----PQTLEAIKHAKSANVPIVVAINKIDKP----GANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE 302 (683)
T ss_pred EEEccCCcc----HhHHHHHHHHHhcCCCEEEEEeccCCC----CCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence 998877321 1223333333 2355667999999953 3222222222221 134444 578999999999
Q ss_pred CHHHHHHHHHHHHhcCc
Q 041042 236 NVNKILKFITAKLFDIP 252 (268)
Q Consensus 236 ~i~~~f~~l~~~i~~~~ 252 (268)
|++.+-+.+.-...-+.
T Consensus 303 nl~~L~eaill~Ae~md 319 (683)
T KOG1145|consen 303 NLDLLEEAILLLAEVMD 319 (683)
T ss_pred ChHHHHHHHHHHHHHhh
Confidence 99999999876554443
No 272
>PRK12739 elongation factor G; Reviewed
Probab=99.33 E-value=2.2e-11 Score=117.44 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=76.5
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCC--C------CC-----C-----CCCCcceeeEEEEEEECCeEEEEEEEeCCCcc
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDE--K------EQ-----G-----GSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~--~------~~-----~-----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 143 (268)
...+|+|+|..++|||||+++|+... . .. + ....+..+.....+..++ .+++++||+|+.
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~ 84 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGHV 84 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCHH
Confidence 35789999999999999999997421 0 00 0 011122222223334443 568899999999
Q ss_pred ccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCC
Q 041042 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDF 200 (268)
Q Consensus 144 ~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~ 200 (268)
.|.......++.+|++|+|+|+++...-+.. ..+..+... +.|.|++.||+|+.
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~~--~~p~iv~iNK~D~~ 138 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADKY--GVPRIVFVNKMDRI 138 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHHc--CCCEEEEEECCCCC
Confidence 8888888889999999999999876443332 223333332 45668999999975
No 273
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.32 E-value=1.8e-11 Score=102.31 Aligned_cols=169 Identities=13% Similarity=0.161 Sum_probs=105.9
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEE-EEEECCeEEEEEEEeCCCccc-------cccchhhh
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDK-TLLVRGARISYSIWEVTGDAK-------AQDHLPVA 152 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~ 152 (268)
...++|+++|..|+|||||+|++..+...+-..-..|.+.... ...+++ -.+.+||++|-++ ++.....+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHH
Confidence 3458999999999999999999986543322211112222111 123445 3488999999655 55667778
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCC---------CCccch-hchHHHHHHHHHHh
Q 041042 153 CKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQ---------LPIDLQ-WTIASQARAYAKAL 222 (268)
Q Consensus 153 ~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~---------~~~~~~-~~~~~~~~~~~~~~ 222 (268)
+...|.++++.|..|+.-=-+ .+++..+....-+.+.+++.|.+|.... .+.... .-+.+.+..+.+..
T Consensus 115 l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~ 193 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTD-EDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF 193 (296)
T ss_pred hhhccEEEEeccCCCccccCC-HHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 889999999999987652111 2334455554445667899999996422 111111 11122222222222
Q ss_pred --CCeEEEEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 223 --NATLFFSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 223 --~~~~~~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
-.+.+..|...+.|++++...++..+....
T Consensus 194 q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~ 225 (296)
T COG3596 194 QEVKPVVAVSGRLPWGLKELVRALITALPVEA 225 (296)
T ss_pred hhcCCeEEeccccCccHHHHHHHHHHhCcccc
Confidence 246777888999999999999998776443
No 274
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.31 E-value=1.3e-11 Score=119.29 Aligned_cols=116 Identities=11% Similarity=0.125 Sum_probs=80.6
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcC---------------CCCCC---CCCCcceeeEEEEEEECCeEEEEEEEeCCCcc
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGD---------------EKEQG---GSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~---------------~~~~~---~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 143 (268)
...+|+++|..++|||||+.+|+.. .+... ...|+...........++..+.+++|||+|+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 3579999999999999999999742 11111 11244333333334466778899999999999
Q ss_pred ccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCC
Q 041042 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDF 200 (268)
Q Consensus 144 ~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~ 200 (268)
+|.......++.+|++|+|+|+.+.-..+....|.. +.. .+.++|+++||+|..
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~~--~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-ALK--ENVKPVLFINKVDRL 151 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HHH--cCCCEEEEEEChhcc
Confidence 998888889999999999999877433222222322 221 244668999999963
No 275
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.30 E-value=3.9e-11 Score=98.44 Aligned_cols=104 Identities=11% Similarity=0.098 Sum_probs=62.5
Q ss_pred EEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchH
Q 041042 133 SYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIA 212 (268)
Q Consensus 133 ~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~ 212 (268)
...+.++.|..--.... . .-++.+|.|+|+++.++... .+..++ ...-++++||+|+..... .......
T Consensus 93 D~iiIEt~G~~l~~~~~-~--~l~~~~i~vvD~~~~~~~~~--~~~~qi-----~~ad~~~~~k~d~~~~~~-~~~~~~~ 161 (199)
T TIGR00101 93 EMVFIESGGDNLSATFS-P--ELADLTIFVIDVAAGDKIPR--KGGPGI-----TRSDLLVINKIDLAPMVG-ADLGVME 161 (199)
T ss_pred CEEEEECCCCCcccccc-h--hhhCcEEEEEEcchhhhhhh--hhHhHh-----hhccEEEEEhhhcccccc-ccHHHHH
Confidence 34567777732111111 1 12688999999987666321 111222 112379999999732111 1122223
Q ss_pred HHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHHh
Q 041042 213 SQARAYAKALNATLFFSSATYNINVNKILKFITAKLF 249 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~i~ 249 (268)
++++.+ ..+.+++++||++|+|++++|+++.+.++
T Consensus 162 ~~~~~~--~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 162 RDAKKM--RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHh--CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 444443 34689999999999999999999987654
No 276
>PRK13768 GTPase; Provisional
Probab=99.30 E-value=2.2e-11 Score=103.62 Aligned_cols=115 Identities=10% Similarity=0.047 Sum_probs=71.7
Q ss_pred EEEEEeCCCcccc---ccchhhhhcC-----CcEEEEEEeCCChhhHHHHH--HHHHHHHHhCCCCceEEEEeCCCCCCC
Q 041042 133 SYSIWEVTGDAKA---QDHLPVACKD-----SIAILFMFDLTSRCTLKSVI--RWYQQARKCNQTAIPIIIGTKFDDFIQ 202 (268)
Q Consensus 133 ~l~i~Dt~G~~~~---~~~~~~~~~~-----a~~vilv~D~~~~~s~~~~~--~~~~~i~~~~~~~~~ilvgnK~Dl~~~ 202 (268)
.+.+||++|+.++ +..+..+++. ++++++|+|++...+..+.. .|+........+.++|+|.||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~-- 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL-- 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc--
Confidence 5789999998764 3333333332 89999999996544333322 3333333223466778999999973
Q ss_pred CCccchhchHHHHH------------------------HHHHHhC--CeEEEEcCCCCcCHHHHHHHHHHHHhc
Q 041042 203 LPIDLQWTIASQAR------------------------AYAKALN--ATLFFSSATYNINVNKILKFITAKLFD 250 (268)
Q Consensus 203 ~~~~~~~~~~~~~~------------------------~~~~~~~--~~~~~~Sa~~~~~i~~~f~~l~~~i~~ 250 (268)
............. +..+..+ .+++++||+++.|+++++++|.+.+..
T Consensus 176 -~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 176 -SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred -CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 2222211111111 1223334 578999999999999999999887654
No 277
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=3.7e-11 Score=105.59 Aligned_cols=159 Identities=12% Similarity=0.086 Sum_probs=102.4
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCC--CCC------------------------C---CCCCcceeeEEEEEEECCeE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDE--KEQ------------------------G---GSPGEGLNMMDKTLLVRGAR 131 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~--~~~------------------------~---~~~t~~~~~~~~~~~~~~~~ 131 (268)
...++++++|...+|||||+-+|+.+- +.. + ....-|.++......+....
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 346899999999999999999986421 110 0 00012444444444555666
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChh---hHHHHH--HHHHHHHHhCCCCceEEEEeCCCCCCCCCcc
Q 041042 132 ISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRC---TLKSVI--RWYQQARKCNQTAIPIIIGTKFDDFIQLPID 206 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~---s~~~~~--~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~ 206 (268)
..+.|.|++|+..|-.-.-.-...||+.|||+|+.+.+ .|.--. +-...+.+...-.-.||+.||.|+.. .+++
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~-wde~ 163 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVS-WDEE 163 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccc-cCHH
Confidence 78999999998887554445567899999999998764 221111 11112222222333478999999843 2333
Q ss_pred chhchHHHHHHHHHHhC-----CeEEEEcCCCCcCHHHH
Q 041042 207 LQWTIASQARAYAKALN-----ATLFFSSATYNINVNKI 240 (268)
Q Consensus 207 ~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 240 (268)
+-..+..++..+.+..| ++|+.+|+..|+|+.+.
T Consensus 164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 33344667777777776 45899999999998654
No 278
>PRK00007 elongation factor G; Reviewed
Probab=99.28 E-value=7.2e-11 Score=113.86 Aligned_cols=114 Identities=17% Similarity=0.154 Sum_probs=75.1
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhc--CCCC-----C------C-----CCCCcceeeEEEEEEECCeEEEEEEEeCCCcc
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVG--DEKE-----Q------G-----GSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~--~~~~-----~------~-----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 143 (268)
...+|+|+|..++|||||+++|+. +... . + ....+..+.....+... ..++++.||+|+.
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG~~ 86 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPGHV 86 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCCcH
Confidence 346999999999999999999973 1110 0 0 01112222222233333 4568899999998
Q ss_pred ccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCC
Q 041042 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDF 200 (268)
Q Consensus 144 ~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~ 200 (268)
.|.......++.+|++|+|+|+...-.-+...-|. .+.+. +.|.|++.||+|+.
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~~--~~p~iv~vNK~D~~ 140 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADKY--KVPRIAFVNKMDRT 140 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHHc--CCCEEEEEECCCCC
Confidence 88766777788999999999987654444433333 23332 34568999999974
No 279
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.27 E-value=1.2e-11 Score=111.41 Aligned_cols=167 Identities=22% Similarity=0.397 Sum_probs=129.1
Q ss_pred CCCCCCceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhc
Q 041042 75 HLDADNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACK 154 (268)
Q Consensus 75 ~~~~~~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 154 (268)
+.-+....++|+-|+|..++|||+|+++|+.+.|.....+ .|..| .+++.++++...+.+.|.+|... .+|..
T Consensus 22 wtlsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~-e~~~~-kkE~vv~gqs~lLlirdeg~~~~-----aQft~ 94 (749)
T KOG0705|consen 22 WTLSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESP-EGGRF-KKEVVVDGQSHLLLIRDEGGHPD-----AQFCQ 94 (749)
T ss_pred eeeecccchhheeeeecccCCceeeeeeeccceeccccCC-cCccc-eeeEEeeccceEeeeecccCCch-----hhhhh
Confidence 3344566789999999999999999999999999776666 34444 47778899999999999998433 56788
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCce-EEEEeCCCCCCCCCccchhch-HHHHHHH-HHHhCCeEEEEc
Q 041042 155 DSIAILFMFDLTSRCTLKSVIRWYQQARKCN-QTAIP-IIIGTKFDDFIQLPIDLQWTI-ASQARAY-AKALNATLFFSS 230 (268)
Q Consensus 155 ~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~~-ilvgnK~Dl~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~S 230 (268)
++|++|+||.+.+..+|+.+......+..+. ...++ +++|++.- .+....+++ ...+.++ ++...+.||+++
T Consensus 95 wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~----iS~~~~rv~~da~~r~l~~~~krcsy~et~ 170 (749)
T KOG0705|consen 95 WVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDH----ISAKRPRVITDDRARQLSAQMKRCSYYETC 170 (749)
T ss_pred hccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcch----hhcccccccchHHHHHHHHhcCccceeecc
Confidence 9999999999999999999988777765543 23344 68888765 333333333 4444444 455579999999
Q ss_pred CCCCcCHHHHHHHHHHHHhcCc
Q 041042 231 ATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 231 a~~~~~i~~~f~~l~~~i~~~~ 252 (268)
|.+|.++..+|+.+..++....
T Consensus 171 atyGlnv~rvf~~~~~k~i~~~ 192 (749)
T KOG0705|consen 171 ATYGLNVERVFQEVAQKIVQLR 192 (749)
T ss_pred hhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999998877663
No 280
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.27 E-value=4.9e-12 Score=102.76 Aligned_cols=170 Identities=16% Similarity=0.195 Sum_probs=108.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccc-----ccchhhhhcCC
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKE-QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKA-----QDHLPVACKDS 156 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~~~~~a 156 (268)
.-||+++|.+|+||||+-..+..+... +...++-..|+.-..+.+- ....+++||.+||+.+ .......+++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rfl-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-GNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhh-hhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 359999999999999987665543211 1111211122222222222 2356899999999854 23456678999
Q ss_pred cEEEEEEeCCChhh---HHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchH----HHHHHHHHHhCCeEEEE
Q 041042 157 IAILFMFDLTSRCT---LKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIA----SQARAYAKALNATLFFS 229 (268)
Q Consensus 157 ~~vilv~D~~~~~s---~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 229 (268)
+++|+|||+...+- |...++-++.+.++.|...+.+..+|.|| +..+.+..+. +....+.+..++.++.+
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDL---v~~d~r~~if~~r~~~l~~~s~~~~~~~f~T 159 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDL---VQEDARELIFQRRKEDLRRLSRPLECKCFPT 159 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechh---cccchHHHHHHHHHHHHHHhccccccccccc
Confidence 99999999988764 33444556667777777777899999998 6666555553 33444455556778887
Q ss_pred cCCCCcCHHHHHHHHHHHHhcCccchhc
Q 041042 230 SATYNINVNKILKFITAKLFDIPWTLER 257 (268)
Q Consensus 230 Sa~~~~~i~~~f~~l~~~i~~~~~~~~~ 257 (268)
|.- .+++-..+..+...++......+.
T Consensus 160 siw-Detl~KAWS~iv~~lipn~~~~e~ 186 (295)
T KOG3886|consen 160 SIW-DETLYKAWSSIVYNLIPNVSALES 186 (295)
T ss_pred chh-hHHHHHHHHHHHHhhCCChHHHHH
Confidence 754 344555566666666665544443
No 281
>PRK09866 hypothetical protein; Provisional
Probab=99.26 E-value=2.3e-10 Score=106.30 Aligned_cols=108 Identities=18% Similarity=0.157 Sum_probs=69.7
Q ss_pred EEEEEeCCCcccc-----ccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccc
Q 041042 133 SYSIWEVTGDAKA-----QDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDL 207 (268)
Q Consensus 133 ~l~i~Dt~G~~~~-----~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~ 207 (268)
.+.|.||||.... .......+.++|+|++|+|.++.-+..+ ....+.+.+.+...|.++|.||+|+. ...
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K~~PVILVVNKIDl~---dre- 305 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQSVPLYVLVNKFDQQ---DRN- 305 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCCCCCEEEEEEcccCC---Ccc-
Confidence 4678999996542 2223446899999999999987544433 22344444443334668999999962 111
Q ss_pred hhchHHHHHHHHH----HhC---CeEEEEcCCCCcCHHHHHHHHHH
Q 041042 208 QWTIASQARAYAK----ALN---ATLFFSSATYNINVNKILKFITA 246 (268)
Q Consensus 208 ~~~~~~~~~~~~~----~~~---~~~~~~Sa~~~~~i~~~f~~l~~ 246 (268)
....+.+..+.+ ..+ ..+|.+||++|.|++++++.|.+
T Consensus 306 -eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 306 -SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred -cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 111333333322 222 35899999999999999999876
No 282
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.26 E-value=1.6e-10 Score=101.49 Aligned_cols=123 Identities=14% Similarity=0.208 Sum_probs=82.3
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHhC--CCCceEEEEeCC
Q 041042 130 ARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSR----------CTLKSVIRWYQQARKCN--QTAIPIIIGTKF 197 (268)
Q Consensus 130 ~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~----------~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~ 197 (268)
..+.+.+||++|+...+..|.+|+.+++++|+|+|+++. ..+.+....++.+-... .+.|++|++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 346788999999999999999999999999999999874 33444444444443321 355668999999
Q ss_pred CCCC-C---------CCccch-hchHHHHHHHHHH----------hCCeEEEEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 198 DDFI-Q---------LPIDLQ-WTIASQARAYAKA----------LNATLFFSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 198 Dl~~-~---------~~~~~~-~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
|+.. + .++-.. ....+.+..+... ..+-.+.++|..-.++..+|+.+.+.++...
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 9642 1 111111 1123333333221 1233456899999999999999988877653
No 283
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.24 E-value=3.6e-11 Score=88.54 Aligned_cols=136 Identities=17% Similarity=0.188 Sum_probs=91.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccc----cccchhhhhcCCcEEE
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK----AQDHLPVACKDSIAIL 160 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~~~~~~~a~~vi 160 (268)
|++++|..|+|||||.+.+.++.. .+..|..+.|..+ -.+||+|.-- +..-.-....++|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~~d~-----------~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEFNDK-----------GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccceeeccCc-----------cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 799999999999999999988753 3444444443221 1478988322 1111223357899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCC-eEEEEcCCCCcCHHH
Q 041042 161 FMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNA-TLFFSSATYNINVNK 239 (268)
Q Consensus 161 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~ 239 (268)
+|-.+++++|.-. ..+... ...+.|-|.+|.|| .+ ....+..+.|..+-|. ++|++|+.++.|+++
T Consensus 70 ~v~~and~~s~f~-----p~f~~~-~~k~vIgvVTK~DL----ae---d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~ 136 (148)
T COG4917 70 YVHAANDPESRFP-----PGFLDI-GVKKVIGVVTKADL----AE---DADISLVKRWLREAGAEPIFETSAVDNQGVEE 136 (148)
T ss_pred eeecccCccccCC-----cccccc-cccceEEEEecccc----cc---hHhHHHHHHHHHHcCCcceEEEeccCcccHHH
Confidence 9999998875211 001111 13346788999997 22 2224556777777776 588899999999999
Q ss_pred HHHHHHH
Q 041042 240 ILKFITA 246 (268)
Q Consensus 240 ~f~~l~~ 246 (268)
+++.|..
T Consensus 137 l~~~L~~ 143 (148)
T COG4917 137 LVDYLAS 143 (148)
T ss_pred HHHHHHh
Confidence 9999864
No 284
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.23 E-value=2.4e-10 Score=101.50 Aligned_cols=163 Identities=13% Similarity=0.149 Sum_probs=116.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCC--CCCC------------CCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccch
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDE--KEQG------------GSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHL 149 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~--~~~~------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 149 (268)
-+|+|+-.-.-|||||+..++... |... ....-|.+...|...++.+.++++|.||+|+..|....
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 468899999999999999997642 3221 11223666666665666666889999999999999999
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHH-------h
Q 041042 150 PVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKA-------L 222 (268)
Q Consensus 150 ~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~-------~ 222 (268)
...+.-.|++++++|+.+.. .-..+..+.... ...-.||||.||+|. +..+...+.+++..+.-. +
T Consensus 86 ERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl--~~gL~PIVVvNKiDr----p~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKAL--ALGLKPIVVINKIDR----PDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred hhhhhhcceEEEEEEcccCC-CCchhhhHHHHH--HcCCCcEEEEeCCCC----CCCCHHHHHHHHHHHHHHhCCChhhC
Confidence 99999999999999997632 111111222222 236678999999994 555555555666666544 4
Q ss_pred CCeEEEEcCCCC----------cCHHHHHHHHHHHHhcCcc
Q 041042 223 NATLFFSSATYN----------INVNKILKFITAKLFDIPW 253 (268)
Q Consensus 223 ~~~~~~~Sa~~~----------~~i~~~f~~l~~~i~~~~~ 253 (268)
.++++..|+++| .++..+|+.|++.+....-
T Consensus 159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~ 199 (603)
T COG1217 159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG 199 (603)
T ss_pred CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence 468899999876 4688999999998877653
No 285
>PTZ00258 GTP-binding protein; Provisional
Probab=99.17 E-value=9.4e-10 Score=98.30 Aligned_cols=85 Identities=13% Similarity=0.112 Sum_probs=56.6
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCe---------------EEEEEEEeCCCcccc-
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGA---------------RISYSIWEVTGDAKA- 145 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~- 145 (268)
..+||.|+|.||||||||+|++.+........|..+.+.....+.+.+. ...+++.||||-..-
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 3479999999999999999999887654444443333333333443322 234899999995432
Q ss_pred ---ccchhhh---hcCCcEEEEEEeCC
Q 041042 146 ---QDHLPVA---CKDSIAILFMFDLT 166 (268)
Q Consensus 146 ---~~~~~~~---~~~a~~vilv~D~~ 166 (268)
..+...+ ++.+|++++|+|..
T Consensus 100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 100 SEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1232333 57899999999973
No 286
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.13 E-value=9.5e-10 Score=94.91 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=68.3
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCC--CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccc-------hh
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEK--EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDH-------LP 150 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~~ 150 (268)
+...++|+++|.+||||||++|++++... .....+ .+..........+| .++.+|||+|....... ..
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s-~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQS-EGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCC-cceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHH
Confidence 45579999999999999999999998763 122222 22221112223344 56889999997653221 12
Q ss_pred hhh--cCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhCC---CCceEEEEeCCCC
Q 041042 151 VAC--KDSIAILFMFDLTSRCTLKSV-IRWYQQARKCNQ---TAIPIIIGTKFDD 199 (268)
Q Consensus 151 ~~~--~~a~~vilv~D~~~~~s~~~~-~~~~~~i~~~~~---~~~~ilvgnK~Dl 199 (268)
.|+ ...|++++|..++.. .+... ...++.+....+ -...|||.|+.|.
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~ 165 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQF 165 (313)
T ss_pred HHhhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCcc
Confidence 222 268999999655422 12211 223344433321 1335899999996
No 287
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.12 E-value=9e-10 Score=91.35 Aligned_cols=162 Identities=17% Similarity=0.179 Sum_probs=92.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCC-CCCCC-CCcceeeEEEEEEECCeEEEEEEEeCCCccccc--------cch---h
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEK-EQGGS-PGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQ--------DHL---P 150 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~-~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~---~ 150 (268)
++|+|+|..|+||||++|.+++... ..... .............++|.. +.++||||-..-. .+. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 5899999999999999999998864 33211 112222333444667755 6789999942211 111 1
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh-CCC--CceEEEEeCCCCCCCCCccc-hhch----HHHHHHHHHHh
Q 041042 151 VACKDSIAILFMFDLTSRCTLKSVIRWYQQARKC-NQT--AIPIIIGTKFDDFIQLPIDL-QWTI----ASQARAYAKAL 222 (268)
Q Consensus 151 ~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~-~~~--~~~ilvgnK~Dl~~~~~~~~-~~~~----~~~~~~~~~~~ 222 (268)
....+.|++|+|+..+ +-+-.+.. .++.+... .+. .-.|||.|..|. +.+.. .... ....+++.+..
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~~-~l~~l~~~FG~~~~k~~ivvfT~~d~---~~~~~~~~~l~~~~~~~l~~li~~c 153 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDRE-VLELLQEIFGEEIWKHTIVVFTHADE---LEDDSLEDYLKKESNEALQELIEKC 153 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHHH-HHHHHHHHHCGGGGGGEEEEEEEGGG---GTTTTHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCCeEEEEEEecC-cchHHHHH-HHHHHHHHccHHHHhHhhHHhhhccc---cccccHHHHHhccCchhHhHHhhhc
Confidence 2245789999999987 33322222 22233322 222 223677888874 22221 1111 23467788888
Q ss_pred CCeEEEEcCC------CCcCHHHHHHHHHHHHhcCc
Q 041042 223 NATLFFSSAT------YNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 223 ~~~~~~~Sa~------~~~~i~~~f~~l~~~i~~~~ 252 (268)
+-.|+..+.+ ....+.++++.+-+.+.++.
T Consensus 154 ~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 154 GGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp TTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 8888887766 33457888888777766664
No 288
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.12 E-value=1.4e-09 Score=89.88 Aligned_cols=151 Identities=14% Similarity=0.119 Sum_probs=80.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCC--------CCCCCCccee----eEEEEEEE-CC-------------------e
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKE--------QGGSPGEGLN----MMDKTLLV-RG-------------------A 130 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~--------~~~~~t~~~~----~~~~~~~~-~~-------------------~ 130 (268)
...|.++|..|+|||||++++...-.. ......+... .....+.+ +| .
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~~ 101 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPLD 101 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhccC
Confidence 467889999999999999998753100 0000000000 00001111 11 1
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhc
Q 041042 131 RISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWT 210 (268)
Q Consensus 131 ~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~ 210 (268)
...+.+.+|.|.-.. ...+....+..+.|+|+++.+.... .....+ ..+.++++||+|+. ... ..
T Consensus 102 ~~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d~~~~--~~~~~~-----~~a~iiv~NK~Dl~---~~~--~~ 166 (207)
T TIGR00073 102 DIDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGDDKPL--KYPGMF-----KEADLIVINKADLA---EAV--GF 166 (207)
T ss_pred CCCEEEEecCCCcCC---CcccccccCeEEEEEecCcccchhh--hhHhHH-----hhCCEEEEEHHHcc---ccc--hh
Confidence 234556777662100 0111123455667888775543111 101111 23458999999972 211 11
Q ss_pred hHHHHHHHHHHh--CCeEEEEcCCCCcCHHHHHHHHHHHH
Q 041042 211 IASQARAYAKAL--NATLFFSSATYNINVNKILKFITAKL 248 (268)
Q Consensus 211 ~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~f~~l~~~i 248 (268)
..++..+..++. ..+++++||++|.|++++|+++.+..
T Consensus 167 ~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 167 DVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 122333333333 38899999999999999999998753
No 289
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.11 E-value=2.3e-09 Score=94.76 Aligned_cols=83 Identities=16% Similarity=0.163 Sum_probs=55.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeE---------------EEEEEEeCCCcccc---
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGAR---------------ISYSIWEVTGDAKA--- 145 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~--- 145 (268)
++|.++|.||||||||+|++++........|..+.+.....+.+.+.. ..+++.|+||...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 799999999999999999999877433333322323333334443321 35899999995431
Q ss_pred -ccchhhh---hcCCcEEEEEEeCC
Q 041042 146 -QDHLPVA---CKDSIAILFMFDLT 166 (268)
Q Consensus 146 -~~~~~~~---~~~a~~vilv~D~~ 166 (268)
..+...+ ++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1233333 57899999999984
No 290
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.11 E-value=4.9e-09 Score=88.83 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=68.1
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCC--CCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccc--c-c------
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQ--GGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQ--D-H------ 148 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--~-~------ 148 (268)
....++|+|+|.+|||||||+|.+.+..... ...++ ...........++ ..+.+|||+|-.... . .
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~-T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSE-TLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCc-eEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence 4456999999999999999999999976422 22221 1122222333444 457899999965431 1 1
Q ss_pred -hhhhhc--CCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhCCC---CceEEEEeCCCC
Q 041042 149 -LPVACK--DSIAILFMFDLTSR-CTLKSVIRWYQQARKCNQT---AIPIIIGTKFDD 199 (268)
Q Consensus 149 -~~~~~~--~a~~vilv~D~~~~-~s~~~~~~~~~~i~~~~~~---~~~ilvgnK~Dl 199 (268)
...|+. ..+++++|..++.. .++.+ ...++.+....+. ...|||.||+|.
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~ 161 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAAS 161 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCcc
Confidence 122343 57888888655432 12222 1333344432221 245799999996
No 291
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.08 E-value=3.5e-09 Score=92.98 Aligned_cols=105 Identities=12% Similarity=0.055 Sum_probs=65.4
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhch
Q 041042 132 ISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTI 211 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~ 211 (268)
+.+.|.||+|...-.. .....||.+++|.+....+..+.+.. .+.+. .-|+|.||+|+ .........
T Consensus 149 ~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E~----aDIiVVNKaDl---~~~~~a~~~ 215 (332)
T PRK09435 149 YDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKK---GIMEL----ADLIVINKADG---DNKTAARRA 215 (332)
T ss_pred CCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHh---hhhhh----hheEEeehhcc---cchhHHHHH
Confidence 5678999999653221 14567999999977555555544332 11111 12899999997 222211122
Q ss_pred HHHHHHHHHH-------hCCeEEEEcCCCCcCHHHHHHHHHHHHh
Q 041042 212 ASQARAYAKA-------LNATLFFSSATYNINVNKILKFITAKLF 249 (268)
Q Consensus 212 ~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~f~~l~~~i~ 249 (268)
..+....... +..+++.+||+++.||+++++.|.+...
T Consensus 216 ~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 216 AAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2233332222 2357899999999999999999987644
No 292
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.07 E-value=3.1e-09 Score=88.94 Aligned_cols=139 Identities=17% Similarity=0.210 Sum_probs=81.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
...|+++|.+|+|||||++.+.+..-........|. + .+ .......+.++||+|.- ..+. ...+.+|++++|
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllv 110 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NAMI-DIAKVADLVLLL 110 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HHHH-HHHHhcCEEEEE
Confidence 478999999999999999999765211111111121 1 11 12244567899999853 2222 335789999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccc-hhchHHHHHH-HHHH--hCCeEEEEcCCCCc
Q 041042 163 FDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDL-QWTIASQARA-YAKA--LNATLFFSSATYNI 235 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~Sa~~~~ 235 (268)
+|.+....... ...+..+... +.|. |+|.||+|+ +.... .....+++++ +..+ .+.+++.+||++.-
T Consensus 111 iDa~~~~~~~~-~~i~~~l~~~--g~p~vi~VvnK~D~---~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 111 IDASFGFEMET-FEFLNILQVH--GFPRVMGVLTHLDL---FKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EecCcCCCHHH-HHHHHHHHHc--CCCeEEEEEecccc---CCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 99876443322 2233333332 3344 469999997 32211 1222334433 3322 25689999999874
No 293
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.06 E-value=2.1e-09 Score=92.67 Aligned_cols=152 Identities=14% Similarity=0.117 Sum_probs=95.2
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCC------------CCCCCCc-------------------ceeeEEEEEEECCe
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKE------------QGGSPGE-------------------GLNMMDKTLLVRGA 130 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~------------~~~~~t~-------------------~~~~~~~~~~~~~~ 130 (268)
..++++-+|.-.=||||||-||+.+.-. .....|. |.+...--..+...
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 3589999999999999999999764210 0001111 11111111112334
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccc--h
Q 041042 131 RISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDL--Q 208 (268)
Q Consensus 131 ~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~--~ 208 (268)
+-+|.+-||||+++|..-.-.-...||++|+++|+-.. -++..+ -...|...-.-.-+||..||+|| +..++ -
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTr-RHs~I~sLLGIrhvvvAVNKmDL---vdy~e~~F 159 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTR-RHSFIASLLGIRHVVVAVNKMDL---VDYSEEVF 159 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhH-HHHHHHHHhCCcEEEEEEeeecc---cccCHHHH
Confidence 55789999999999966555556789999999998321 111111 11222222222334688999998 33332 2
Q ss_pred hchHHHHHHHHHHhCC---eEEEEcCCCCcCHH
Q 041042 209 WTIASQARAYAKALNA---TLFFSSATYNINVN 238 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~ 238 (268)
..+.++-..|+.++++ .++.+||..|+||-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 3446777888999885 58889999999974
No 294
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.03 E-value=3.5e-09 Score=102.89 Aligned_cols=115 Identities=12% Similarity=0.164 Sum_probs=75.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCC--CCC---------CCCCC---cceeeEE----EEEEECCeEEEEEEEeCCCccc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDE--KEQ---------GGSPG---EGLNMMD----KTLLVRGARISYSIWEVTGDAK 144 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~--~~~---------~~~~t---~~~~~~~----~~~~~~~~~~~l~i~Dt~G~~~ 144 (268)
.-.|+++|..++|||||+.+++... ... ++.+. -|.+... .....++....++++||||+.+
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d 99 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD 99 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence 4579999999999999999997532 100 00000 0111111 1112355577899999999999
Q ss_pred cccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCC
Q 041042 145 AQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDF 200 (268)
Q Consensus 145 ~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~ 200 (268)
|.......++.+|++|+|+|+...-.-+....|.. +.+. +.++|++.||+|+.
T Consensus 100 f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~~--~~~~iv~iNK~D~~ 152 (731)
T PRK07560 100 FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALRE--RVKPVLFINKVDRL 152 (731)
T ss_pred hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHHc--CCCeEEEEECchhh
Confidence 98888888999999999999876543333333333 2222 34568999999963
No 295
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.00 E-value=6e-09 Score=89.82 Aligned_cols=141 Identities=16% Similarity=0.185 Sum_probs=82.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCC----------CCCcceeeEEEEEEECCeEEEEEEEeCCCcccc-------
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGG----------SPGEGLNMMDKTLLVRGARISYSIWEVTGDAKA------- 145 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------- 145 (268)
.++|+|+|.+|+|||||+|.|++....... ..+.........+.-++..+.|.++||+|-...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999987543321 122233333334455788899999999992211
Q ss_pred ccc-------hhhhh-------------cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCc
Q 041042 146 QDH-------LPVAC-------------KDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPI 205 (268)
Q Consensus 146 ~~~-------~~~~~-------------~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~ 205 (268)
..+ ...|+ ...|++|++.+.+... +..+. ++.+++......+|-|..|+|. +..
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~D--i~~mk~Ls~~vNvIPvIaKaD~---lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLD--IEFMKRLSKRVNVIPVIAKADT---LTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHH--HHHHHHHTTTSEEEEEESTGGG---S-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHH--HHHHHHhcccccEEeEEecccc---cCH
Confidence 000 00111 2468999999976421 22111 3445555556666789999997 555
Q ss_pred cchhchHHHHHHHHHHhCCeEEEE
Q 041042 206 DLQWTIASQARAYAKALNATLFFS 229 (268)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~ 229 (268)
++....++.+.+-.+.+++.+|.-
T Consensus 158 ~el~~~k~~i~~~l~~~~I~~f~f 181 (281)
T PF00735_consen 158 EELQAFKQRIREDLEENNIKIFDF 181 (281)
T ss_dssp HHHHHHHHHHHHHHHHTT--S---
T ss_pred HHHHHHHHHHHHHHHHcCceeecc
Confidence 555555777777788888887663
No 296
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.00 E-value=1.6e-09 Score=88.27 Aligned_cols=94 Identities=16% Similarity=0.182 Sum_probs=64.5
Q ss_pred cccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHH-----
Q 041042 145 AQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYA----- 219 (268)
Q Consensus 145 ~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~----- 219 (268)
+..++..+++++|++++|+|+++... .|...+.....+.++++|+||+|+ ++.. ...+....+.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~~~~~~ilV~NK~Dl---~~~~---~~~~~~~~~~~~~~~ 92 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFGGNNPVILVGNKIDL---LPKD---KNLVRIKNWLRAKAA 92 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhcCCCcEEEEEEchhc---CCCC---CCHHHHHHHHHHHHH
Confidence 57788889999999999999987542 223333222335566899999997 2221 1222333333
Q ss_pred HHhCC---eEEEEcCCCCcCHHHHHHHHHHHHh
Q 041042 220 KALNA---TLFFSSATYNINVNKILKFITAKLF 249 (268)
Q Consensus 220 ~~~~~---~~~~~Sa~~~~~i~~~f~~l~~~i~ 249 (268)
+..+. .++.+||++|.|++++++.|.+.+.
T Consensus 93 ~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 93 AGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred hhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 23333 6899999999999999999988763
No 297
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.99 E-value=1.9e-08 Score=89.35 Aligned_cols=157 Identities=10% Similarity=0.110 Sum_probs=96.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcC----CCC------------CCCC-----CCcceee---EEEEEE-ECCeEEEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGD----EKE------------QGGS-----PGEGLNM---MDKTLL-VRGARISYSIW 137 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~----~~~------------~~~~-----~t~~~~~---~~~~~~-~~~~~~~l~i~ 137 (268)
.+.|.|+|..++|||||+++|.+. ... ++.. .|+..-| ..-++. .++....+.+.
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 589999999999999999999886 322 1111 1222222 112222 24666788899
Q ss_pred eCCCccc--------ccc--c-------------------hhhhhc-CCcEEEEEE-eCC----ChhhHHHH-HHHHHHH
Q 041042 138 EVTGDAK--------AQD--H-------------------LPVACK-DSIAILFMF-DLT----SRCTLKSV-IRWYQQA 181 (268)
Q Consensus 138 Dt~G~~~--------~~~--~-------------------~~~~~~-~a~~vilv~-D~~----~~~s~~~~-~~~~~~i 181 (268)
||+|-.. ... + ++..+. .+++.|+|. |.+ .++.+... .+|++++
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 9998321 111 0 223344 889999888 764 12334333 3677777
Q ss_pred HHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCC--CCcCHHHHHHHHHHHH
Q 041042 182 RKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSAT--YNINVNKILKFITAKL 248 (268)
Q Consensus 182 ~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~i~~~f~~l~~~i 248 (268)
++. +.|.|+|.||.|- . .....+...++.++++++++.+|+. +.+.|..+++.+....
T Consensus 177 k~~--~kPfiivlN~~dp----~---~~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~EF 236 (492)
T TIGR02836 177 KEL--NKPFIILLNSTHP----Y---HPETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYEF 236 (492)
T ss_pred Hhc--CCCEEEEEECcCC----C---CchhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhcC
Confidence 664 4566899999992 1 1123444556778889998887774 4456777776665443
No 298
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.98 E-value=4.5e-09 Score=90.00 Aligned_cols=81 Identities=15% Similarity=0.141 Sum_probs=54.6
Q ss_pred EEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeE---------------EEEEEEeCCCcccc----c
Q 041042 86 ISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGAR---------------ISYSIWEVTGDAKA----Q 146 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~----~ 146 (268)
|.++|.||||||||+|++++........|..+.+.....+.+.+.. ..++++|+||...- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999987644444433333333444444432 35899999995432 2
Q ss_pred cchhhh---hcCCcEEEEEEeCC
Q 041042 147 DHLPVA---CKDSIAILFMFDLT 166 (268)
Q Consensus 147 ~~~~~~---~~~a~~vilv~D~~ 166 (268)
.+...| ++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 233333 56899999999863
No 299
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.91 E-value=5.7e-09 Score=102.69 Aligned_cols=115 Identities=14% Similarity=0.213 Sum_probs=76.1
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCC--CC---------CCCC---CcceeeEE--EEEEE--------------CCeE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEK--EQ---------GGSP---GEGLNMMD--KTLLV--------------RGAR 131 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~--~~---------~~~~---t~~~~~~~--~~~~~--------------~~~~ 131 (268)
...+|+|+|..++|||||+.+|+...- .. ++.+ .-|.++.. ..+.+ .+..
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 346899999999999999999975321 00 0000 00111111 11222 1235
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCC
Q 041042 132 ISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDD 199 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl 199 (268)
..++++||||+.+|.......++.+|++|+|+|+.+.-.-....-|.... . .+.|.|++.||+|+
T Consensus 98 ~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~-~--~~~p~i~~iNK~D~ 162 (843)
T PLN00116 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-G--ERIRPVLTVNKMDR 162 (843)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHH-H--CCCCEEEEEECCcc
Confidence 77899999999999888888889999999999998764444333443322 2 24566899999996
No 300
>PTZ00416 elongation factor 2; Provisional
Probab=98.91 E-value=5.9e-09 Score=102.43 Aligned_cols=114 Identities=13% Similarity=0.193 Sum_probs=74.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCC--CCCC---------CCC---CcceeeE--EEEEEEC--------CeEEEEEEEe
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDE--KEQG---------GSP---GEGLNMM--DKTLLVR--------GARISYSIWE 138 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~--~~~~---------~~~---t~~~~~~--~~~~~~~--------~~~~~l~i~D 138 (268)
..+|+++|..++|||||+.+|+... .... +.+ .-|.+.. ...+.++ +....+++.|
T Consensus 19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liD 98 (836)
T PTZ00416 19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLID 98 (836)
T ss_pred cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEc
Confidence 3589999999999999999997632 1000 000 0011111 1122222 2256789999
Q ss_pred CCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCC
Q 041042 139 VTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDD 199 (268)
Q Consensus 139 t~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl 199 (268)
|||+.+|.......++.+|++|+|+|+.+.-.-+...-| ..+... +.|.|++.||+|+
T Consensus 99 tPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~~--~~p~iv~iNK~D~ 156 (836)
T PTZ00416 99 SPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQE--RIRPVLFINKVDR 156 (836)
T ss_pred CCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHHc--CCCEEEEEEChhh
Confidence 999999887778888999999999998875433332233 333332 3466899999996
No 301
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.90 E-value=4.5e-09 Score=93.93 Aligned_cols=98 Identities=17% Similarity=0.201 Sum_probs=72.4
Q ss_pred ccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccc-hhchHHHHHHHHH
Q 041042 142 DAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDL-QWTIASQARAYAK 220 (268)
Q Consensus 142 ~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~-~~~~~~~~~~~~~ 220 (268)
++.|..+...+++.++++++|+|+.+.. ..|..++.++..+.++++|+||+|| ++... .....+.++++++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~~~piilV~NK~DL---l~k~~~~~~~~~~l~~~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVGGNPVLLVGNKIDL---LPKSVNLSKIKEWMKKRAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhCCCCEEEEEEchhh---CCCCCCHHHHHHHHHHHHH
Confidence 5678888899999999999999997654 3455666665445667899999998 33221 1122333445677
Q ss_pred HhCC---eEEEEcCCCCcCHHHHHHHHHHH
Q 041042 221 ALNA---TLFFSSATYNINVNKILKFITAK 247 (268)
Q Consensus 221 ~~~~---~~~~~Sa~~~~~i~~~f~~l~~~ 247 (268)
+.++ .++++||++|.|++++|+.|.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 7777 48999999999999999998764
No 302
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.87 E-value=4.5e-09 Score=88.52 Aligned_cols=110 Identities=12% Similarity=0.142 Sum_probs=55.5
Q ss_pred EEEEEeCCCccccccchhhhh--------cCCcEEEEEEeCCC---hhhHHHHHHHHHHHHH-hCCCCceEEEEeCCCCC
Q 041042 133 SYSIWEVTGDAKAQDHLPVAC--------KDSIAILFMFDLTS---RCTLKSVIRWYQQARK-CNQTAIPIIIGTKFDDF 200 (268)
Q Consensus 133 ~l~i~Dt~G~~~~~~~~~~~~--------~~a~~vilv~D~~~---~~s~~~~~~~~~~i~~-~~~~~~~ilvgnK~Dl~ 200 (268)
.+.++|||||.++...+.... ...-++++++|..- +..|-. .++..+.. ..-+.|.|.|.||+|+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~~~lP~vnvlsK~Dl- 168 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLRLELPHVNVLSKIDL- 168 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHHHTSEEEEEE--GGG-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhhCCCCEEEeeeccCc-
Confidence 578999999988655444332 34568888999753 333422 22222211 1225566899999998
Q ss_pred CCCCccch--------------------hchHHHHHHHHHHhC-C-eEEEEcCCCCcCHHHHHHHHHHH
Q 041042 201 IQLPIDLQ--------------------WTIASQARAYAKALN-A-TLFFSSATYNINVNKILKFITAK 247 (268)
Q Consensus 201 ~~~~~~~~--------------------~~~~~~~~~~~~~~~-~-~~~~~Sa~~~~~i~~~f~~l~~~ 247 (268)
++.... ....+.+.++...++ . .++.+|+++++++++++..+-+.
T Consensus 169 --~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 169 --LSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp --S-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred --ccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 331100 000111222222233 3 68889999999999999987654
No 303
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.86 E-value=8.6e-08 Score=83.67 Aligned_cols=106 Identities=9% Similarity=-0.062 Sum_probs=61.5
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhc
Q 041042 131 RISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWT 210 (268)
Q Consensus 131 ~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~ 210 (268)
.+.+.|.||+|.-.. .......+|.++++-+.. +-+++......+. ..+.++|.||+|+. .......
T Consensus 126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~----~~~~ivv~NK~Dl~---~~~~~~~ 192 (300)
T TIGR00750 126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPG---TGDDLQGIKAGLM----EIADIYVVNKADGE---GATNVTI 192 (300)
T ss_pred CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCC---ccHHHHHHHHHHh----hhccEEEEEccccc---chhHHHH
Confidence 356789999984321 122456778888885433 3334333333332 33458999999972 2211111
Q ss_pred hHH----HHHHHHHH---hCCeEEEEcCCCCcCHHHHHHHHHHHHh
Q 041042 211 IAS----QARAYAKA---LNATLFFSSATYNINVNKILKFITAKLF 249 (268)
Q Consensus 211 ~~~----~~~~~~~~---~~~~~~~~Sa~~~~~i~~~f~~l~~~i~ 249 (268)
... ....+.+. +..+++.+||++|.|++++++++.+...
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 111 11111121 2346899999999999999999987643
No 304
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=2.1e-08 Score=93.67 Aligned_cols=163 Identities=17% Similarity=0.183 Sum_probs=101.6
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCC----CcceeeEEEE--------EEECC----eEEEEEEEeCCCcc
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSP----GEGLNMMDKT--------LLVRG----ARISYSIWEVTGDA 143 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~----t~~~~~~~~~--------~~~~~----~~~~l~i~Dt~G~~ 143 (268)
+....=|||+|.-.+|||-|+..+.+......... .+|-+|.... +.-++ ..--+.++||+|++
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 44455699999999999999999987654433333 2344443321 00011 11237789999999
Q ss_pred ccccchhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCC---CCCCccc---------h
Q 041042 144 KAQDHLPVACKDSIAILFMFDLTS---RCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDF---IQLPIDL---------Q 208 (268)
Q Consensus 144 ~~~~~~~~~~~~a~~vilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~---~~~~~~~---------~ 208 (268)
.|..++......||.+|+|+|+.. +.+.+.+. .++. .+.|.||..||+|-. ...+... .
T Consensus 552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~----lLR~--rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k 625 (1064)
T KOG1144|consen 552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN----LLRM--RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKK 625 (1064)
T ss_pred hhhhhhhccccccceEEEEeehhccCCcchhHHHH----HHHh--cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhH
Confidence 999999999999999999999864 34444432 2222 256778999999942 0011100 0
Q ss_pred hch-------HHHHHHHHHH-hC-------------CeEEEEcCCCCcCHHHHHHHHHHHH
Q 041042 209 WTI-------ASQARAYAKA-LN-------------ATLFFSSATYNINVNKILKFITAKL 248 (268)
Q Consensus 209 ~~~-------~~~~~~~~~~-~~-------------~~~~~~Sa~~~~~i~~~f~~l~~~i 248 (268)
.+. ...+.+|+++ ++ +.++.+||.+|+||.+++.+|++..
T Consensus 626 ~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt 686 (1064)
T KOG1144|consen 626 DVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT 686 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence 000 1111222221 11 3457799999999999999887643
No 305
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.85 E-value=4.6e-08 Score=77.69 Aligned_cols=62 Identities=11% Similarity=0.039 Sum_probs=43.9
Q ss_pred EEEEeCCCccc----cccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCC
Q 041042 134 YSIWEVTGDAK----AQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKF 197 (268)
Q Consensus 134 l~i~Dt~G~~~----~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~ 197 (268)
+.|+||||-.. ...++..|+..+|++|+|.+.+...+-.....|.+....... ..|+|.||.
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~--~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKS--RTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCS--SEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCC--eEEEEEcCC
Confidence 67999999543 346678889999999999999886665555555555543322 267888984
No 306
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=1.5e-07 Score=82.51 Aligned_cols=82 Identities=17% Similarity=0.218 Sum_probs=57.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCC--CcceeeEEEEEEE------------C-C---eEEEEEEEeCCCcc-
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSP--GEGLNMMDKTLLV------------R-G---ARISYSIWEVTGDA- 143 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~--t~~~~~~~~~~~~------------~-~---~~~~l~i~Dt~G~~- 143 (268)
.+++-|+|.||||||||.|.++.........| |+..+. -.+.+ . . ....+++.|.+|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~--Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~ 79 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNV--GVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK 79 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCe--eEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence 47999999999999999999998875444444 332222 22221 1 1 23568899999843
Q ss_pred ---ccccchhhh---hcCCcEEEEEEeCC
Q 041042 144 ---KAQDHLPVA---CKDSIAILFMFDLT 166 (268)
Q Consensus 144 ---~~~~~~~~~---~~~a~~vilv~D~~ 166 (268)
.-+.+-+.| +|.+|+++.|+|+.
T Consensus 80 GAs~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 80 GASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred CcccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 345566666 47899999999876
No 307
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=9.8e-08 Score=82.28 Aligned_cols=161 Identities=16% Similarity=0.227 Sum_probs=99.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcC----CCCCCCCC---CcceeeEEEEEEE-------CCeEEEEEEEeCCCccccccc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGD----EKEQGGSP---GEGLNMMDKTLLV-------RGARISYSIWEVTGDAKAQDH 148 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~----~~~~~~~~---t~~~~~~~~~~~~-------~~~~~~l~i~Dt~G~~~~~~~ 148 (268)
.+++-++|.-.+|||+|.+++..- -|+.+..+ .+..|..-..+.+ .++...+.+.|++|+.. +
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas---L 83 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS---L 83 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH---H
Confidence 489999999999999999998642 23322222 1222222122222 46678889999999854 3
Q ss_pred hhhhhcC---CcEEEEEEeCCChhhHHHHHH-HHHHHHHhCCCCceEEEEeCCCCCCCCCccchhch-HHHHHHHHHHh-
Q 041042 149 LPVACKD---SIAILFMFDLTSRCTLKSVIR-WYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTI-ASQARAYAKAL- 222 (268)
Q Consensus 149 ~~~~~~~---a~~vilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~-~~~~~~~~~~~- 222 (268)
.+..+-+ .|..++|+|+.....=+..+- .+.++. ....|||.||+|+ +++.++... .+...++.+.+
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~---lpE~qr~ski~k~~kk~~KtLe 156 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDV---LPENQRASKIEKSAKKVRKTLE 156 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEecccc---ccchhhhhHHHHHHHHHHHHHH
Confidence 3444444 467799999875432222221 112211 2234788899997 666544433 33333333322
Q ss_pred ------CCeEEEEcCCCC----cCHHHHHHHHHHHHhcCcc
Q 041042 223 ------NATLFFSSATYN----INVNKILKFITAKLFDIPW 253 (268)
Q Consensus 223 ------~~~~~~~Sa~~~----~~i~~~f~~l~~~i~~~~~ 253 (268)
+.|++++||+.| ++|.++.+.|..++++...
T Consensus 157 ~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R 197 (522)
T KOG0461|consen 157 STGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR 197 (522)
T ss_pred hcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc
Confidence 268999999999 7888888888888877653
No 308
>PRK00098 GTPase RsgA; Reviewed
Probab=98.83 E-value=1.9e-08 Score=87.63 Aligned_cols=86 Identities=15% Similarity=0.120 Sum_probs=64.4
Q ss_pred hhcCCcEEEEEEeCCChhhHHH-HHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEc
Q 041042 152 ACKDSIAILFMFDLTSRCTLKS-VIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSS 230 (268)
Q Consensus 152 ~~~~a~~vilv~D~~~~~s~~~-~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 230 (268)
...++|++++|+|+++++++.. +.+|+..+.. .+.+++||+||+||. .+ ....++..++.+..+++++++|
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~---~~---~~~~~~~~~~~~~~g~~v~~vS 148 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLL---DD---LEEARELLALYRAIGYDVLELS 148 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcC---CC---HHHHHHHHHHHHHCCCeEEEEe
Confidence 3589999999999998876544 4688777654 356778999999972 11 1123334455667789999999
Q ss_pred CCCCcCHHHHHHHHH
Q 041042 231 ATYNINVNKILKFIT 245 (268)
Q Consensus 231 a~~~~~i~~~f~~l~ 245 (268)
|+++.|++++++.+.
T Consensus 149 A~~g~gi~~L~~~l~ 163 (298)
T PRK00098 149 AKEGEGLDELKPLLA 163 (298)
T ss_pred CCCCccHHHHHhhcc
Confidence 999999999998764
No 309
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.82 E-value=9.9e-08 Score=84.64 Aligned_cols=136 Identities=15% Similarity=0.228 Sum_probs=87.1
Q ss_pred CCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHH
Q 041042 113 SPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSR----------CTLKSVIRWYQQAR 182 (268)
Q Consensus 113 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~----------~s~~~~~~~~~~i~ 182 (268)
.+|+|... ..+.+++ +.+.+||++|+...+..|.+|+.+++++|+|+|+++. ..+.+....++.+-
T Consensus 169 ~~T~Gi~~--~~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~ 244 (342)
T smart00275 169 VPTTGIQE--TAFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESIC 244 (342)
T ss_pred CCccceEE--EEEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHH
Confidence 34555433 2344444 5578999999999999999999999999999999973 23444444444444
Q ss_pred Hh--CCCCceEEEEeCCCCCCC----------CCccchhchHHHHHHHHH-----Hh------CCeEEEEcCCCCcCHHH
Q 041042 183 KC--NQTAIPIIIGTKFDDFIQ----------LPIDLQWTIASQARAYAK-----AL------NATLFFSSATYNINVNK 239 (268)
Q Consensus 183 ~~--~~~~~~ilvgnK~Dl~~~----------~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~Sa~~~~~i~~ 239 (268)
.. -.+.|++|++||.|+... .++-......+.+..+.. .. .+-.+.|+|.+-.++..
T Consensus 245 ~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~ 324 (342)
T smart00275 245 NSRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRV 324 (342)
T ss_pred cCccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHH
Confidence 32 235566799999997521 111111112233333322 11 13345588999999999
Q ss_pred HHHHHHHHHhcCc
Q 041042 240 ILKFITAKLFDIP 252 (268)
Q Consensus 240 ~f~~l~~~i~~~~ 252 (268)
+|+.+...++...
T Consensus 325 v~~~v~~~I~~~~ 337 (342)
T smart00275 325 VFDAVKDIILQRN 337 (342)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888777643
No 310
>PRK12289 GTPase RsgA; Reviewed
Probab=98.81 E-value=2.9e-08 Score=88.05 Aligned_cols=92 Identities=14% Similarity=0.093 Sum_probs=68.1
Q ss_pred ccchhhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCC
Q 041042 146 QDHLPVACKDSIAILFMFDLTSRC-TLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNA 224 (268)
Q Consensus 146 ~~~~~~~~~~a~~vilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (268)
..+.+..+.++|.+++|+|+.++. ++..+.+|+..+.. .+.++|||+||+|| ..+ .. .+...+..+..|+
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~--~~ip~ILVlNK~DL---v~~---~~-~~~~~~~~~~~g~ 150 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES--TGLEIVLCLNKADL---VSP---TE-QQQWQDRLQQWGY 150 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEchhc---CCh---HH-HHHHHHHHHhcCC
Confidence 445566789999999999998876 55567788876633 45677899999997 221 11 1222333456788
Q ss_pred eEEEEcCCCCcCHHHHHHHHHH
Q 041042 225 TLFFSSATYNINVNKILKFITA 246 (268)
Q Consensus 225 ~~~~~Sa~~~~~i~~~f~~l~~ 246 (268)
+++.+||++|.|++++++.+..
T Consensus 151 ~v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 151 QPLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred eEEEEEcCCCCCHHHHhhhhcc
Confidence 9999999999999999998864
No 311
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=1.2e-07 Score=86.69 Aligned_cols=160 Identities=15% Similarity=0.120 Sum_probs=102.6
Q ss_pred CCceeEEEEEEcCCCChHHHHHHHHhcC--------------------CCCC---------CCCCCcceeeEEEEEEECC
Q 041042 79 DNLVALKISLLGDCHIGKTSFLEKYVGD--------------------EKEQ---------GGSPGEGLNMMDKTLLVRG 129 (268)
Q Consensus 79 ~~~~~~ki~vlG~~~vGKSsLi~~l~~~--------------------~~~~---------~~~~t~~~~~~~~~~~~~~ 129 (268)
.....+.++++|.-.+|||||+.+++.. +..- .....-|++...+...++.
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 3445789999999999999999988541 1100 0111125555556666677
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHH----H--HHHHHHHHhCCCCceEEEEeCCCCCCCC
Q 041042 130 ARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV----I--RWYQQARKCNQTAIPIIIGTKFDDFIQL 203 (268)
Q Consensus 130 ~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~----~--~~~~~i~~~~~~~~~ilvgnK~Dl~~~~ 203 (268)
....+.+.|.||+..|-.-.-.-...||+.+||+|++- ..|+.= . +-...+.+.-.-.-.||+.||.|+.. .
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~-W 330 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVS-W 330 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccC-c
Confidence 77789999999988886655555678999999999863 333221 1 11112222222233468999999721 1
Q ss_pred CccchhchHHHHHHHH-HHhC-----CeEEEEcCCCCcCHHHH
Q 041042 204 PIDLQWTIASQARAYA-KALN-----ATLFFSSATYNINVNKI 240 (268)
Q Consensus 204 ~~~~~~~~~~~~~~~~-~~~~-----~~~~~~Sa~~~~~i~~~ 240 (268)
++++-..+...+..|. +..| +.|+.||+.+|+|+-..
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 1222234466677777 5555 46999999999997654
No 312
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.79 E-value=2.7e-08 Score=78.32 Aligned_cols=95 Identities=13% Similarity=0.060 Sum_probs=63.8
Q ss_pred ccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCe
Q 041042 146 QDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNAT 225 (268)
Q Consensus 146 ~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (268)
+.+.++.++++|++|+|+|++++..... ..+...+.. .+.|+++|+||+|+ .+. ... +....+.+..+.+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~--~~~p~iiv~NK~Dl---~~~---~~~-~~~~~~~~~~~~~ 72 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE--LGKKLLIVLNKADL---VPK---EVL-EKWKSIKESEGIP 72 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh--CCCcEEEEEEhHHh---CCH---HHH-HHHHHHHHhCCCc
Confidence 4567788889999999999987543222 122222221 24566899999997 221 111 1122344456778
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHHhc
Q 041042 226 LFFSSATYNINVNKILKFITAKLFD 250 (268)
Q Consensus 226 ~~~~Sa~~~~~i~~~f~~l~~~i~~ 250 (268)
++.+||+++.|++++++.+.+.+..
T Consensus 73 ~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 73 VVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EEEEEccccccHHHHHHHHHHHHhh
Confidence 9999999999999999999877653
No 313
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.79 E-value=7.7e-08 Score=90.05 Aligned_cols=114 Identities=15% Similarity=0.185 Sum_probs=70.8
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCC-CCCCCC-C-CcceeeEEEEEEECCeEEEEEEEeCCCccccc-------cc---
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDE-KEQGGS-P-GEGLNMMDKTLLVRGARISYSIWEVTGDAKAQ-------DH--- 148 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~-~~~~~~-~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~--- 148 (268)
..++|+|+|.+||||||++|.+++.. +..... + |.. ........++ ..+.++||+|-.... .+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr--~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~ 192 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS--VQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSS 192 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE--EEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHH
Confidence 45899999999999999999999975 433321 2 222 1112223444 458899999965421 11
Q ss_pred hhhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc---eEEEEeCCCC
Q 041042 149 LPVACK--DSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAI---PIIIGTKFDD 199 (268)
Q Consensus 149 ~~~~~~--~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~---~ilvgnK~Dl 199 (268)
...++. ..|++|+|..++......+-..+++.+.......+ .|||.|+.|.
T Consensus 193 Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~ 248 (763)
T TIGR00993 193 VKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAAS 248 (763)
T ss_pred HHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCcc
Confidence 122333 58999999887643332222355666665544322 3799999997
No 314
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.79 E-value=7.6e-08 Score=80.62 Aligned_cols=114 Identities=10% Similarity=0.058 Sum_probs=61.3
Q ss_pred EEEEEEeCCCccc-ccc-----chhhhhc--CCcEEEEEEeCC---ChhhHHH-HHHHHHHHHHhCCCCceEEEEeCCCC
Q 041042 132 ISYSIWEVTGDAK-AQD-----HLPVACK--DSIAILFMFDLT---SRCTLKS-VIRWYQQARKCNQTAIPIIIGTKFDD 199 (268)
Q Consensus 132 ~~l~i~Dt~G~~~-~~~-----~~~~~~~--~a~~vilv~D~~---~~~s~~~-~~~~~~~i~~~~~~~~~ilvgnK~Dl 199 (268)
....++|||||-. |.. +....+. ..-++++|+|.. ++.+|-. +-.-...+ +...-|.|+|.||+|+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSil--yktklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSIL--YKTKLPFIVVFNKTDV 193 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHH--HhccCCeEEEEecccc
Confidence 4578999999754 321 1111222 234777888853 3444422 11111111 2234455899999996
Q ss_pred CCCCCccc---hhch-HHHHHHHHH-------------------H--hCCeEEEEcCCCCcCHHHHHHHHHHHHhcC
Q 041042 200 FIQLPIDL---QWTI-ASQARAYAK-------------------A--LNATLFFSSATYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 200 ~~~~~~~~---~~~~-~~~~~~~~~-------------------~--~~~~~~~~Sa~~~~~i~~~f~~l~~~i~~~ 251 (268)
. +.. .+.. .+..++-.+ + .++..+-+||.+|.|.+++|..+-+.+.+-
T Consensus 194 ~----d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 194 S----DSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred c----ccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 3 211 1111 111111011 1 135678899999999999999887665543
No 315
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=3.4e-08 Score=84.35 Aligned_cols=169 Identities=14% Similarity=0.106 Sum_probs=107.9
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCC---CCCCCCC--CcceeeEEEEE------------------EEC----CeEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDE---KEQGGSP--GEGLNMMDKTL------------------LVR----GARIS 133 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~---~~~~~~~--t~~~~~~~~~~------------------~~~----~~~~~ 133 (268)
+..++|-++|.-.-|||||.+.+.+-- +.+.... |+..-|....+ ... .-.-.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 457899999999999999999997631 1111111 01000100000 001 11235
Q ss_pred EEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHH
Q 041042 134 YSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIAS 213 (268)
Q Consensus 134 l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~ 213 (268)
+.|.|.+|+|-..+..-+-..-.|+++||++++.++---...+-+-.+.-. .-.-+|||-||+|| ...++-.+..+
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi-gik~iiIvQNKIDl---V~~E~AlE~y~ 163 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII-GIKNIIIVQNKIDL---VSRERALENYE 163 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh-ccceEEEEecccce---ecHHHHHHHHH
Confidence 779999999875433322223358999999998765332222222222211 12335799999998 55555556688
Q ss_pred HHHHHHHHh---CCeEEEEcCCCCcCHHHHHHHHHHHHhcCcc
Q 041042 214 QARAYAKAL---NATLFFSSATYNINVNKILKFITAKLFDIPW 253 (268)
Q Consensus 214 ~~~~~~~~~---~~~~~~~Sa~~~~~i~~~f~~l~~~i~~~~~ 253 (268)
++++|.+.. +.+++.+||..+.||+.+++.|.+.+.....
T Consensus 164 qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r 206 (415)
T COG5257 164 QIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER 206 (415)
T ss_pred HHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence 888888754 6789999999999999999999999877653
No 316
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.77 E-value=5.9e-08 Score=77.61 Aligned_cols=148 Identities=17% Similarity=0.114 Sum_probs=81.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCC-CcceeeEE-------------EEEEE---------------------
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSP-GEGLNMMD-------------KTLLV--------------------- 127 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~-t~~~~~~~-------------~~~~~--------------------- 127 (268)
.+.|-|.|++|+|||+|+.+++..--.. |.. -+..|.++ ..+.+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~ 91 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELV 91 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHh
Confidence 4899999999999999999876421100 110 00001110 01111
Q ss_pred -CCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCC--ceEEEEeCCCCCCCCC
Q 041042 128 -RGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTA--IPIIIGTKFDDFIQLP 204 (268)
Q Consensus 128 -~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~~ilvgnK~Dl~~~~~ 204 (268)
......+.|.+.+| .. ...-.+.-..+.-|+|+|++..+-- .++..|.. .-++|.||.||..+..
T Consensus 92 ~~~~~~Dll~iEs~G--NL-~~~~sp~L~d~~~v~VidvteGe~~---------P~K~gP~i~~aDllVInK~DLa~~v~ 159 (202)
T COG0378 92 LDFPDLDLLFIESVG--NL-VCPFSPDLGDHLRVVVIDVTEGEDI---------PRKGGPGIFKADLLVINKTDLAPYVG 159 (202)
T ss_pred hcCCcCCEEEEecCc--ce-ecccCcchhhceEEEEEECCCCCCC---------cccCCCceeEeeEEEEehHHhHHHhC
Confidence 01113455666666 11 1111222334478889998875421 11112211 2379999999832211
Q ss_pred ccchhchHHHHHHHHHHh--CCeEEEEcCCCCcCHHHHHHHHHHHH
Q 041042 205 IDLQWTIASQARAYAKAL--NATLFFSSATYNINVNKILKFITAKL 248 (268)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~f~~l~~~i 248 (268)
. ..+...+-+++. +.+++++|+++|+|++++++++....
T Consensus 160 ~-----dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 160 A-----DLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred c-----cHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 1 123333334433 58999999999999999999987654
No 317
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.77 E-value=4.3e-08 Score=85.01 Aligned_cols=89 Identities=17% Similarity=0.135 Sum_probs=68.2
Q ss_pred hhhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEE
Q 041042 149 LPVACKDSIAILFMFDLTSRC-TLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLF 227 (268)
Q Consensus 149 ~~~~~~~a~~vilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (268)
.+..+.++|.+++|+|+.++. ++..+.+|+..+... +.++++|+||+|| .++ . .......+....+.+++
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~--~ip~iIVlNK~DL---~~~---~-~~~~~~~~~~~~g~~v~ 142 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA--GIEPVIVLTKADL---LDD---E-EEELELVEALALGYPVL 142 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc--CCCEEEEEEHHHC---CCh---H-HHHHHHHHHHhCCCeEE
Confidence 344588999999999999988 888999998877653 5677899999997 222 1 11222334455789999
Q ss_pred EEcCCCCcCHHHHHHHHHH
Q 041042 228 FSSATYNINVNKILKFITA 246 (268)
Q Consensus 228 ~~Sa~~~~~i~~~f~~l~~ 246 (268)
.+||+++.|+++++..+..
T Consensus 143 ~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 143 AVSAKTGEGLDELREYLKG 161 (287)
T ss_pred EEECCCCccHHHHHhhhcc
Confidence 9999999999999887753
No 318
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.75 E-value=8.3e-08 Score=85.13 Aligned_cols=164 Identities=14% Similarity=0.125 Sum_probs=78.3
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcce---eeEEEEEEECCeEEEEEEEeCCCccccccchhhh-----h
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL---NMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVA-----C 153 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~-----~ 153 (268)
..++|+|+|++|+|||||||.|.+-.-.+.....+|+ +.....+... ..-.+.+||.||...-.--...| +
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 3589999999999999999999763222221222222 1111122211 22237799999954322222333 4
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHH-HHHHHhCCCCceEEEEeCCCCC-----CCCC-ccchhchHHHHHHHHHH----h
Q 041042 154 KDSIAILFMFDLTSRCTLKSVIRWY-QQARKCNQTAIPIIIGTKFDDF-----IQLP-IDLQWTIASQARAYAKA----L 222 (268)
Q Consensus 154 ~~a~~vilv~D~~~~~s~~~~~~~~-~~i~~~~~~~~~ilvgnK~Dl~-----~~~~-~~~~~~~~~~~~~~~~~----~ 222 (268)
...|.+|++.+- .|..-.-|+ ..+.+. +.+..+|-+|+|.- +..+ .-.+....+++++-|.+ .
T Consensus 113 ~~yD~fiii~s~----rf~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 113 YRYDFFIIISSE----RFTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp GG-SEEEEEESS----S--HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred cccCEEEEEeCC----CCchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 567888888753 343333332 333332 44557999999930 0000 00112223444444433 3
Q ss_pred CC---eEEEEcCCCC--cCHHHHHHHHHHHHhcCc
Q 041042 223 NA---TLFFSSATYN--INVNKILKFITAKLFDIP 252 (268)
Q Consensus 223 ~~---~~~~~Sa~~~--~~i~~~f~~l~~~i~~~~ 252 (268)
|+ ++|-+|+.+- .+...+.+.|.+.+...+
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 43 5777888753 457778888887776654
No 319
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.73 E-value=5.2e-07 Score=74.79 Aligned_cols=152 Identities=16% Similarity=0.238 Sum_probs=98.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccc-------hhhhhc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQ-GGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDH-------LPVACK 154 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~~~~~~ 154 (268)
..+|+++|.|.||||||+..+....-.. .|.-| ..+-....+.++|.. +|+.|.||.-.-.+. .-...+
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFT-TLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFT-TLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeee-EEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEEee
Confidence 3699999999999999999997754322 23222 233344556667766 788999984332211 122357
Q ss_pred CCcEEEEEEeCCChhhHH-HHHHHHHHHHHh----CCC------------------------------------------
Q 041042 155 DSIAILFMFDLTSRCTLK-SVIRWYQQARKC----NQT------------------------------------------ 187 (268)
Q Consensus 155 ~a~~vilv~D~~~~~s~~-~~~~~~~~i~~~----~~~------------------------------------------ 187 (268)
.||.+++|.|++..+.-. -+.+-++.+--. .|+
T Consensus 139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl 218 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL 218 (364)
T ss_pred cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence 899999999998765433 223334433110 000
Q ss_pred -----------------C--ce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHH
Q 041042 188 -----------------A--IP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAK 247 (268)
Q Consensus 188 -----------------~--~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~ 247 (268)
. .+ +-|.||+|. +..+++..+|++-+. +.+|+-.+.|++.+++.+.+.
T Consensus 219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~----------vs~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe~ 286 (364)
T KOG1486|consen 219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ----------VSIEEVDRLARQPNS--VVISCNMKLNLDRLLERIWEE 286 (364)
T ss_pred EecCCChHHHHHHHhccceEEEEEEEeeccce----------ecHHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHHH
Confidence 0 12 467788882 456888888888765 556777888999999988876
Q ss_pred Hh
Q 041042 248 LF 249 (268)
Q Consensus 248 i~ 249 (268)
+.
T Consensus 287 l~ 288 (364)
T KOG1486|consen 287 LN 288 (364)
T ss_pred hc
Confidence 54
No 320
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.72 E-value=1.9e-07 Score=81.33 Aligned_cols=141 Identities=18% Similarity=0.247 Sum_probs=92.3
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCC----------CCCCcceeeEEEEEEECCeEEEEEEEeCCCcccc------
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQG----------GSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKA------ 145 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------ 145 (268)
..+.|+++|..|.|||||+|.|++...... ..+|+........+.-++..+.|++.||+|--.+
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 358999999999999999999988643222 2344444444445555788899999999993221
Q ss_pred --------ccchhhhh--------------cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCC
Q 041042 146 --------QDHLPVAC--------------KDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQL 203 (268)
Q Consensus 146 --------~~~~~~~~--------------~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~ 203 (268)
......|+ ...|++++..-.+. ..+..+. +..+++.....-.|=|..|+|. +
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~D--Ie~Mk~ls~~vNlIPVI~KaD~---l 175 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLD--IEAMKRLSKRVNLIPVIAKADT---L 175 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHH--HHHHHHHhcccCeeeeeecccc---C
Confidence 01112222 23689999987653 2232222 2333344434445667789997 6
Q ss_pred CccchhchHHHHHHHHHHhCCeEEE
Q 041042 204 PIDLQWTIASQARAYAKALNATLFF 228 (268)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (268)
..+.....++.+.+-...+++++|.
T Consensus 176 T~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 176 TDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred CHHHHHHHHHHHHHHHHHhCCceeC
Confidence 6666666688888888899998885
No 321
>PRK12288 GTPase RsgA; Reviewed
Probab=98.72 E-value=9.5e-08 Score=84.74 Aligned_cols=88 Identities=11% Similarity=0.133 Sum_probs=67.0
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCC
Q 041042 153 CKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSAT 232 (268)
Q Consensus 153 ~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 232 (268)
..++|.+++|++++...++..+..|+..+.. .+.+++||+||+|| +++.. .....+.....+..+++++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL---~~~~~-~~~~~~~~~~y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET--LGIEPLIVLNKIDL---LDDEG-RAFVNEQLDIYRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEEECccC---CCcHH-HHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3569999999999988899999999876543 35677899999997 33221 112233333445678999999999
Q ss_pred CCcCHHHHHHHHHH
Q 041042 233 YNINVNKILKFITA 246 (268)
Q Consensus 233 ~~~~i~~~f~~l~~ 246 (268)
++.|++++++.|..
T Consensus 192 tg~GideL~~~L~~ 205 (347)
T PRK12288 192 TGEGLEELEAALTG 205 (347)
T ss_pred CCcCHHHHHHHHhh
Confidence 99999999998865
No 322
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.71 E-value=6.9e-08 Score=82.61 Aligned_cols=147 Identities=12% Similarity=0.026 Sum_probs=91.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCC--CCCCcceeeEEEEEEEC-CeEEEEEEEeCCCccc---------cccchhh
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQG--GSPGEGLNMMDKTLLVR-GARISYSIWEVTGDAK---------AQDHLPV 151 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~---------~~~~~~~ 151 (268)
--|.++|-.|+|||||+++|.+....+. .-.|...+. +..... |.. +.+-||-|--. |.+...
T Consensus 179 pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~--h~a~Lpsg~~--vlltDTvGFisdLP~~LvaAF~ATLe- 253 (410)
T KOG0410|consen 179 PVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTL--HSAHLPSGNF--VLLTDTVGFISDLPIQLVAAFQATLE- 253 (410)
T ss_pred ceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchh--hhccCCCCcE--EEEeechhhhhhCcHHHHHHHHHHHH-
Confidence 4689999999999999999986543332 222332222 233333 333 55789988321 222221
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-Cce----EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeE
Q 041042 152 ACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQT-AIP----IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATL 226 (268)
Q Consensus 152 ~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~----ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (268)
-...+|.++-|.|++.++.-+.....+.-+....-. .|. |=|-||+|.....++ .++++ .
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e-------------~E~n~--~ 318 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE-------------EEKNL--D 318 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc-------------cccCC--c
Confidence 246799999999999998766655555555544322 121 347899996221111 22233 5
Q ss_pred EEEcCCCCcCHHHHHHHHHHHHhc
Q 041042 227 FFSSATYNINVNKILKFITAKLFD 250 (268)
Q Consensus 227 ~~~Sa~~~~~i~~~f~~l~~~i~~ 250 (268)
+.+||++|+|++++.+.+-..+..
T Consensus 319 v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 319 VGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred cccccccCccHHHHHHHHHHHhhh
Confidence 789999999999999887665544
No 323
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.71 E-value=1e-07 Score=83.57 Aligned_cols=122 Identities=16% Similarity=0.194 Sum_probs=78.8
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhH-------HHHHHHHHHHHHh-----CCCCceEEEEeCCC
Q 041042 131 RISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTL-------KSVIRWYQQARKC-----NQTAIPIIIGTKFD 198 (268)
Q Consensus 131 ~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~-------~~~~~~~~~i~~~-----~~~~~~ilvgnK~D 198 (268)
...+.++|++||..-+.-|-+++.+++++|+|.++++.+.. ..+.+-++.+... -.+..+||..||.|
T Consensus 194 ~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~D 273 (354)
T KOG0082|consen 194 GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKD 273 (354)
T ss_pred CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHH
Confidence 36688999999988888899999999999999998865421 1122222222222 13567789999999
Q ss_pred CCC-C---------CCccchhchHHHHHHHHHH--------h--CCeEEEEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 199 DFI-Q---------LPIDLQWTIASQARAYAKA--------L--NATLFFSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 199 l~~-~---------~~~~~~~~~~~~~~~~~~~--------~--~~~~~~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
|.. + .++-......+++..+.+. . .+=+..+.|.+-.+|+.+|+.+.+.++...
T Consensus 274 LFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n 347 (354)
T KOG0082|consen 274 LFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN 347 (354)
T ss_pred HHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence 862 1 1111111123333333221 1 122445888888999999999998887654
No 324
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.63 E-value=1.3e-07 Score=81.29 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=36.7
Q ss_pred ceEEEEeCCCCCCCCCccchhchHHHHHHHHHH-hCCeEEEEcCCCCcCHHHHHHHHHHH
Q 041042 189 IPIIIGTKFDDFIQLPIDLQWTIASQARAYAKA-LNATLFFSSATYNINVNKILKFITAK 247 (268)
Q Consensus 189 ~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~f~~l~~~ 247 (268)
.-++|.||+|| ++.. ..........+.+. ..++++.+||++|+|+++++++|..+
T Consensus 232 ADIVVLNKiDL---l~~~-~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 232 ASLMLLNKVDL---LPYL-NFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred CcEEEEEhHHc---Cccc-HHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 44899999997 3211 11122222222222 25789999999999999999999764
No 325
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.63 E-value=8.2e-08 Score=74.35 Aligned_cols=54 Identities=24% Similarity=0.378 Sum_probs=39.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCc
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGD 142 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 142 (268)
+++++|.+|||||||+|++.+..... ...+.|.+.....+.+++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999887532 222334444445555654 4689999995
No 326
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=4.2e-07 Score=80.90 Aligned_cols=154 Identities=17% Similarity=0.065 Sum_probs=95.0
Q ss_pred EEEEcCCCChHHHHHHHHhcCCC---CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 86 ISLLGDCHIGKTSFLEKYVGDEK---EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
|...|.---|||||++.+.+..- .+.... |.+....-...+-....+.|.|.+|++++-...-.-+...|.+++|
T Consensus 3 i~t~GhidHgkT~L~~altg~~~d~l~EekKR--G~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLv 80 (447)
T COG3276 3 IGTAGHIDHGKTTLLKALTGGVTDRLPEEKKR--GITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLV 80 (447)
T ss_pred EEEeeeeeccchhhhhhhcccccccchhhhhc--CceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence 56677888999999999987542 111111 2222222222233344788999999999765555556688999999
Q ss_pred EeCCCh---hhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 163 FDLTSR---CTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 163 ~D~~~~---~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
+|.++. ++-+.+ .-++.. ...-.++|.||+|. ..+.+.....+++.....--..++|.+|+++|+||++
T Consensus 81 V~~deGl~~qtgEhL----~iLdll-gi~~giivltk~D~---~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~ 152 (447)
T COG3276 81 VAADEGLMAQTGEHL----LILDLL-GIKNGIIVLTKADR---VDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEE 152 (447)
T ss_pred EeCccCcchhhHHHH----HHHHhc-CCCceEEEEecccc---ccHHHHHHHHHHHHhhcccccccccccccccCCCHHH
Confidence 999643 333332 222222 12223799999996 2222111122222222223346789999999999999
Q ss_pred HHHHHHHHHh
Q 041042 240 ILKFITAKLF 249 (268)
Q Consensus 240 ~f~~l~~~i~ 249 (268)
+.+.|.+...
T Consensus 153 Lk~~l~~L~~ 162 (447)
T COG3276 153 LKNELIDLLE 162 (447)
T ss_pred HHHHHHHhhh
Confidence 9999998875
No 327
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.62 E-value=6.1e-07 Score=75.47 Aligned_cols=25 Identities=36% Similarity=0.660 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCC
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDE 107 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~ 107 (268)
.-.++|+|+.|+||||+++.+.+..
T Consensus 26 ~p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 26 LPQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CCeEEEEcCCCccHHHHHHHHhCCC
Confidence 3489999999999999999999865
No 328
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=1e-06 Score=77.42 Aligned_cols=144 Identities=14% Similarity=0.169 Sum_probs=91.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCC---------CCCCcceeeEEEEEEECCeEEEEEEEeCCCccc-------cc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQG---------GSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK-------AQ 146 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~ 146 (268)
.|.++++|++|.|||||+|.|+...+..+ ...|+........+.-+|..+.|.+.||+|--. +.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 48999999999999999999887654332 222344444444444578889999999999322 11
Q ss_pred c-------chhhhh-----------c--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCcc
Q 041042 147 D-------HLPVAC-----------K--DSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPID 206 (268)
Q Consensus 147 ~-------~~~~~~-----------~--~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~ 206 (268)
. ....|+ . ..|++++....+.. .+..+. +..+++.....-.|-|..|+|. +..+
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~D--i~~Mk~l~~~vNiIPVI~KaD~---lT~~ 174 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLD--IEFMKKLSKKVNLIPVIAKADT---LTKD 174 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhh--HHHHHHHhccccccceeecccc---CCHH
Confidence 1 111222 2 57899999886542 222222 2334444444445667889997 5555
Q ss_pred chhchHHHHHHHHHHhCCeEEEEcCC
Q 041042 207 LQWTIASQARAYAKALNATLFFSSAT 232 (268)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~Sa~ 232 (268)
.....+..+.+-+..+++++|.-..-
T Consensus 175 El~~~K~~I~~~i~~~nI~vf~fp~~ 200 (366)
T KOG2655|consen 175 ELNQFKKRIRQDIEEHNIKVFDFPTD 200 (366)
T ss_pred HHHHHHHHHHHHHHHcCcceecCCCC
Confidence 55566788888888899887774433
No 329
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.58 E-value=6.6e-07 Score=73.66 Aligned_cols=143 Identities=9% Similarity=0.200 Sum_probs=87.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCC---------CCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccc---c----
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQ---------GGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKA---Q---- 146 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~---------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---~---- 146 (268)
.|.|+|+|.+|.|||||+|.+....... .+..|+.....+..+.-++.+.++.++||+|--.. .
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 5899999999999999999987643221 23334444444455556788899999999993211 1
Q ss_pred -------cchhhhhc--------------CCcEEEEEEeCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCC
Q 041042 147 -------DHLPVACK--------------DSIAILFMFDLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLP 204 (268)
Q Consensus 147 -------~~~~~~~~--------------~a~~vilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~ 204 (268)
.....|++ ..+++++..-.+- .++.-+. .+++.+.+ -.-+|-|..|+|- +.
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~---vvNvvPVIakaDt---lT 198 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE---VVNVVPVIAKADT---LT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh---hheeeeeEeeccc---cc
Confidence 11222321 3578888887663 3333332 22333322 2223456789994 44
Q ss_pred ccchhchHHHHHHHHHHhCCeEEEEcCC
Q 041042 205 IDLQWTIASQARAYAKALNATLFFSSAT 232 (268)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 232 (268)
-+++..-.+.+++-...+++.+|.--+-
T Consensus 199 leEr~~FkqrI~~el~~~~i~vYPq~~f 226 (336)
T KOG1547|consen 199 LEERSAFKQRIRKELEKHGIDVYPQDSF 226 (336)
T ss_pred HHHHHHHHHHHHHHHHhcCccccccccc
Confidence 3445555777888888889887774333
No 330
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=9.2e-07 Score=73.25 Aligned_cols=163 Identities=14% Similarity=0.148 Sum_probs=100.4
Q ss_pred EEEEEcCCCC--hHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 85 KISLLGDCHI--GKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 85 ki~vlG~~~v--GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
-++|+|-+|| ||-+|+.++....|.....+.-...++.+++........+.+.-..--+.+.-..........++++|
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vmv 85 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVMV 85 (418)
T ss_pred eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEEE
Confidence 5789999999 99999999998888766555444455555442221111122211111111111111112345689999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCC---------------C------------------------
Q 041042 163 FDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQ---------------L------------------------ 203 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~---------------~------------------------ 203 (268)
||++....+..++.|+....-.. -.+.+.+|||.|.... .
T Consensus 86 fdlse~s~l~alqdwl~htdins-fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegssllg 164 (418)
T KOG4273|consen 86 FDLSEKSGLDALQDWLPHTDINS-FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSSLLG 164 (418)
T ss_pred EeccchhhhHHHHhhcccccccc-chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccccccc
Confidence 99999999999999987543221 2344578999994311 0
Q ss_pred CccchhchHHHHHHHHHHhCCeEEEEcCCC------------CcCHHHHHHHHHHHH
Q 041042 204 PIDLQWTIASQARAYAKALNATLFFSSATY------------NINVNKILKFITAKL 248 (268)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~~i~~~f~~l~~~i 248 (268)
+++..-.+...+.+||.++|+.+++.+|.+ ..||+.+|..+-..+
T Consensus 165 sedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahm 221 (418)
T KOG4273|consen 165 SEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHM 221 (418)
T ss_pred cccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhcc
Confidence 000011335667889999999999998853 257888888776543
No 331
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=7.2e-07 Score=85.37 Aligned_cols=113 Identities=12% Similarity=0.168 Sum_probs=80.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCC--CC--CCCC---------C---CcceeeEEEEE--EECCeEEEEEEEeCCCccc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDE--KE--QGGS---------P---GEGLNMMDKTL--LVRGARISYSIWEVTGDAK 144 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~--~~--~~~~---------~---t~~~~~~~~~~--~~~~~~~~l~i~Dt~G~~~ 144 (268)
.-+|.|+|.-.+|||||..+++... .. .... + .-|.+..+..+ ...+ .+.++++||||+-+
T Consensus 10 ~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGHVD 88 (697)
T COG0480 10 IRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGHVD 88 (697)
T ss_pred ceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCccc
Confidence 4689999999999999999986421 10 0000 0 11333333333 3333 57899999999999
Q ss_pred cccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCC
Q 041042 145 AQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDD 199 (268)
Q Consensus 145 ~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl 199 (268)
|.......++-+|++++|+|+...-..+.-.-|.+..+. +.|+|++.||.|.
T Consensus 89 Ft~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~---~vp~i~fiNKmDR 140 (697)
T COG0480 89 FTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY---GVPRILFVNKMDR 140 (697)
T ss_pred cHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc---CCCeEEEEECccc
Confidence 999999999999999999999876555555566554433 5677999999995
No 332
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=1.6e-06 Score=71.51 Aligned_cols=167 Identities=19% Similarity=0.216 Sum_probs=96.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEE--EEECCeEEEEEEEeCCCccccccc---hhhhhcCCcE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKT--LLVRGARISYSIWEVTGDAKAQDH---LPVACKDSIA 158 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~l~i~Dt~G~~~~~~~---~~~~~~~a~~ 158 (268)
-+|+++|...+||||+-+-...+-- + ..|.-..-..+. -.+.+.-+.+++||.|||-.+-.- ....++++-+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMs-P--neTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA 104 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMS-P--NETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA 104 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccC-C--CceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence 4599999999999998765443321 1 111111111110 012335577999999999875332 3556899999
Q ss_pred EEEEEeCCCh--hhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchh----chHHHHHHHHHHh-----CCeEE
Q 041042 159 ILFMFDLTSR--CTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQW----TIASQARAYAKAL-----NATLF 227 (268)
Q Consensus 159 vilv~D~~~~--~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~----~~~~~~~~~~~~~-----~~~~~ 227 (268)
.|+|.|+.+. +.+..+.......-+.+++.-.=|...|.|- ++++-+. .+.+...+-.... .+.|+
T Consensus 105 LifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDG---Lsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~ 181 (347)
T KOG3887|consen 105 LIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDG---LSDDFKIETQRDIHQRTNDELADAGLEKVQVSFY 181 (347)
T ss_pred EEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccC---CchhhhhhhHHHHHHHhhHHHHhhhhccceEEEE
Confidence 9999998653 1222222222222222443333388999995 4544322 2222222222222 24466
Q ss_pred EEcCCCCcCHHHHHHHHHHHHhcCccchhc
Q 041042 228 FSSATYNINVNKILKFITAKLFDIPWTLER 257 (268)
Q Consensus 228 ~~Sa~~~~~i~~~f~~l~~~i~~~~~~~~~ 257 (268)
-+| ...+.|-|.|..+++++...-.+.|.
T Consensus 182 LTS-IyDHSIfEAFSkvVQkLipqLptLEn 210 (347)
T KOG3887|consen 182 LTS-IYDHSIFEAFSKVVQKLIPQLPTLEN 210 (347)
T ss_pred Eee-ecchHHHHHHHHHHHHHhhhchhHHH
Confidence 666 45677999999999888877655554
No 333
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.49 E-value=7.7e-07 Score=70.13 Aligned_cols=89 Identities=16% Similarity=0.210 Sum_probs=57.8
Q ss_pred hhhcCCcEEEEEEeCCChhh--HHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEE
Q 041042 151 VACKDSIAILFMFDLTSRCT--LKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFF 228 (268)
Q Consensus 151 ~~~~~a~~vilv~D~~~~~s--~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (268)
..++++|++++|.|+.++.. ...+.+++. ....+.|+|+|.||+|+ ++. ....+....+.+.+....+.
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~~~~~p~ilVlNKiDl---~~~---~~~~~~~~~~~~~~~~~~~~ 74 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KEKPHKHLIFVLNKCDL---VPT---WVTARWVKILSKEYPTIAFH 74 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHH---hccCCCCEEEEEEchhc---CCH---HHHHHHHHHHhcCCcEEEEE
Confidence 34678999999999988632 233333333 22334677899999997 322 11223333343333333577
Q ss_pred EcCCCCcCHHHHHHHHHHHH
Q 041042 229 SSATYNINVNKILKFITAKL 248 (268)
Q Consensus 229 ~Sa~~~~~i~~~f~~l~~~i 248 (268)
+||+++.|++++.+.+.+..
T Consensus 75 iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 75 ASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred eeccccccHHHHHHHHHHHH
Confidence 99999999999999987653
No 334
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=5.3e-07 Score=83.60 Aligned_cols=116 Identities=17% Similarity=0.236 Sum_probs=79.0
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCC---------CCCCc------ceeeEEE--EEE---ECCeEEEEEEEeC
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQG---------GSPGE------GLNMMDK--TLL---VRGARISYSIWEV 139 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~---------~~~t~------~~~~~~~--~~~---~~~~~~~l~i~Dt 139 (268)
......|.++|.-+.|||+|+..|.......- |..+. |...... ++. ..++.+.+++.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 34457899999999999999999877543211 11111 1111111 111 2567788999999
Q ss_pred CCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCC-ceEEEEeCCCC
Q 041042 140 TGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTA-IPIIIGTKFDD 199 (268)
Q Consensus 140 ~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~-~~ilvgnK~Dl 199 (268)
+|+-.|.......++-+|++++|+|+.+.-.+..-+ .+ ++...+. ++++|.||.|.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr-~i---khaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER-II---KHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH-HH---HHHHhccCcEEEEEehhHH
Confidence 999999988888999999999999998766654322 22 2222234 44699999994
No 335
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.46 E-value=4e-07 Score=76.50 Aligned_cols=162 Identities=14% Similarity=0.156 Sum_probs=94.1
Q ss_pred CCCCCceeEEEEEEcCCCChHHHHHHHHhcCCCCCCC-CCCcceeeEEEEEEECCeEEEEEEEeCCC----------ccc
Q 041042 76 LDADNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGG-SPGEGLNMMDKTLLVRGARISYSIWEVTG----------DAK 144 (268)
Q Consensus 76 ~~~~~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G----------~~~ 144 (268)
.+.+......++++|.+||||||||+-++........ .++.|.+.....+.++ -.+.+.|.+| .+.
T Consensus 129 ~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d 205 (320)
T KOG2486|consen 129 EDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPAD 205 (320)
T ss_pred ccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcch
Confidence 3444556789999999999999999999876532222 2244544333333333 2355788888 234
Q ss_pred cccchhhhhcCCc---EEEEEEeCCChh--hHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhch---HHHH
Q 041042 145 AQDHLPVACKDSI---AILFMFDLTSRC--TLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTI---ASQA 215 (268)
Q Consensus 145 ~~~~~~~~~~~a~---~vilv~D~~~~~--s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~---~~~~ 215 (268)
+..+...|+.+-+ -+++..|++.+- .-.....|+.+ ..+| .+|.||||...+......... ....
T Consensus 206 ~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f 279 (320)
T KOG2486|consen 206 WDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINF 279 (320)
T ss_pred HhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeehhhhhhhccccccCccccceeeh
Confidence 4566777765543 444555654321 11223355544 4455 699999996533221111111 1112
Q ss_pred HHH---HHHhCCeEEEEcCCCCcCHHHHHHHHHH
Q 041042 216 RAY---AKALNATLFFSSATYNINVNKILKFITA 246 (268)
Q Consensus 216 ~~~---~~~~~~~~~~~Sa~~~~~i~~~f~~l~~ 246 (268)
..+ +.....+++.+|+.++.|+++++..+..
T Consensus 280 ~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 280 QGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred hhccccceeccCCceeeecccccCceeeeeehhh
Confidence 222 2233457788999999999999877654
No 336
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.45 E-value=5.2e-07 Score=72.17 Aligned_cols=57 Identities=11% Similarity=0.197 Sum_probs=40.6
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCc
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGD 142 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 142 (268)
..++++++|.+|||||||++++.+..+. ...+..+.++....+.++ ..+.+|||+|.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3579999999999999999999987763 222223444444444444 34789999994
No 337
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.45 E-value=5.9e-07 Score=70.62 Aligned_cols=55 Identities=18% Similarity=0.364 Sum_probs=39.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G 141 (268)
..+++++|.+|+|||||++++.+.. ...+.++.|.+.....+..++ .+.+|||+|
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 4789999999999999999998765 344555666554333233332 588999998
No 338
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.43 E-value=1.6e-06 Score=68.12 Aligned_cols=84 Identities=17% Similarity=0.033 Sum_probs=54.6
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcC
Q 041042 157 IAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNIN 236 (268)
Q Consensus 157 ~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 236 (268)
|++++|+|+.++.+... .|+........+.|+|+|.||+|+ ++. ....+....+.+..+..++.+||++|.|
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~~~~p~IiVlNK~Dl---~~~---~~~~~~~~~~~~~~~~~ii~vSa~~~~g 72 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKEKGKKLILVLNKADL---VPK---EVLRKWLAYLRHSYPTIPFKISATNGQG 72 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhcCCCCEEEEEechhc---CCH---HHHHHHHHHHHhhCCceEEEEeccCCcC
Confidence 68999999988765442 233311112235677899999997 222 1112222234334456788999999999
Q ss_pred HHHHHHHHHHHH
Q 041042 237 VNKILKFITAKL 248 (268)
Q Consensus 237 i~~~f~~l~~~i 248 (268)
++++++.+.+..
T Consensus 73 i~~L~~~i~~~~ 84 (155)
T cd01849 73 IEKKESAFTKQT 84 (155)
T ss_pred hhhHHHHHHHHh
Confidence 999999987654
No 339
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=3.3e-06 Score=75.14 Aligned_cols=134 Identities=10% Similarity=0.108 Sum_probs=87.5
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhc--C--------------CCCCC----CCCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVG--D--------------EKEQG----GSPGEGLNMMDKTLLVRGARISYSIWEVTG 141 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~--~--------------~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G 141 (268)
++-..+||-.|.+|||||..+++- + .+..+ ....-|....+..+.++.....+++.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 345688999999999999998742 1 11000 111135666666777777788899999999
Q ss_pred ccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHH
Q 041042 142 DAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKA 221 (268)
Q Consensus 142 ~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~ 221 (268)
++.|..-+...+..+|.+++|+|+...-.-+. .+.++-.+. .+.|++=..||.|- .-+...+-+.++.+.
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcrl--R~iPI~TFiNKlDR-------~~rdP~ELLdEiE~~ 160 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCRL--RDIPIFTFINKLDR-------EGRDPLELLDEIEEE 160 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHhh--cCCceEEEeecccc-------ccCChHHHHHHHHHH
Confidence 99998888888889999999999875322111 111221111 13444578999994 223445555666666
Q ss_pred hCCe
Q 041042 222 LNAT 225 (268)
Q Consensus 222 ~~~~ 225 (268)
+++.
T Consensus 161 L~i~ 164 (528)
T COG4108 161 LGIQ 164 (528)
T ss_pred hCcc
Confidence 6644
No 340
>PRK13796 GTPase YqeH; Provisional
Probab=98.38 E-value=1.5e-06 Score=77.89 Aligned_cols=95 Identities=19% Similarity=0.195 Sum_probs=63.3
Q ss_pred ccccchhhhhcCCc-EEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccc-hhchHHHHHHHHHH
Q 041042 144 KAQDHLPVACKDSI-AILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDL-QWTIASQARAYAKA 221 (268)
Q Consensus 144 ~~~~~~~~~~~~a~-~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~-~~~~~~~~~~~~~~ 221 (268)
.|..+.... ..++ .+++|+|+.|.. ..|...+.+...+.++++|+||+|| ++.+. .....+....+++.
T Consensus 58 ~~~~~l~~i-~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~~kpviLViNK~DL---l~~~~~~~~i~~~l~~~~k~ 128 (365)
T PRK13796 58 DFLKLLNGI-GDSDALVVNVVDIFDFN-----GSWIPGLHRFVGNNPVLLVGNKADL---LPKSVKKNKVKNWLRQEAKE 128 (365)
T ss_pred HHHHHHHhh-cccCcEEEEEEECccCC-----CchhHHHHHHhCCCCEEEEEEchhh---CCCccCHHHHHHHHHHHHHh
Confidence 344433333 3444 899999987743 3456666665556677899999998 33221 11223344455667
Q ss_pred hCC---eEEEEcCCCCcCHHHHHHHHHHH
Q 041042 222 LNA---TLFFSSATYNINVNKILKFITAK 247 (268)
Q Consensus 222 ~~~---~~~~~Sa~~~~~i~~~f~~l~~~ 247 (268)
.|+ .++.+||++|.|++++++.+.+.
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 776 57899999999999999999765
No 341
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.38 E-value=6.7e-06 Score=72.16 Aligned_cols=158 Identities=15% Similarity=0.144 Sum_probs=97.9
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCc------------ce--eeEEEEEEECC----------------
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGE------------GL--NMMDKTLLVRG---------------- 129 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~------------~~--~~~~~~~~~~~---------------- 129 (268)
....+-|.+.|.-+.|||||+-.|+.+..++..-.|- |. +..-..+-+++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 5557899999999999999998887655433221110 10 11111122221
Q ss_pred -----eEEEEEEEeCCCcccccc--chhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCC
Q 041042 130 -----ARISYSIWEVTGDAKAQD--HLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQ 202 (268)
Q Consensus 130 -----~~~~l~i~Dt~G~~~~~~--~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~ 202 (268)
..-.+.+.||.|+|.|-. +.-.+=...|-.+++..++|.-+--. ++-+-.+. .-.-|.|+|.||+|+
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~--a~~lPviVvvTK~D~--- 267 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIAL--AMELPVIVVVTKIDM--- 267 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhh--hhcCCEEEEEEeccc---
Confidence 112467899999999843 33344467899999998877543211 11111111 114456799999998
Q ss_pred CCccchhchHHHHHHHHHHhC-------------------------CeEEEEcCCCCcCHHHHHHH
Q 041042 203 LPIDLQWTIASQARAYAKALN-------------------------ATLFFSSATYNINVNKILKF 243 (268)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~Sa~~~~~i~~~f~~ 243 (268)
.++++.+.+.+++..+.+..+ +|+|++|+.+|+|++-+.+.
T Consensus 268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~ 333 (527)
T COG5258 268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF 333 (527)
T ss_pred CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH
Confidence 677666666666666654332 47899999999998754443
No 342
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.36 E-value=1.2e-06 Score=73.59 Aligned_cols=96 Identities=11% Similarity=0.092 Sum_probs=55.8
Q ss_pred EEEEEeCCC--ccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhc
Q 041042 133 SYSIWEVTG--DAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWT 210 (268)
Q Consensus 133 ~l~i~Dt~G--~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~ 210 (268)
.+.|.+|.| |.+. ....-+|.+++|.-..-.+..+.++.=+-++ .-|+|.||+|+ +.. ..
T Consensus 123 D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi-------aDi~vVNKaD~----~gA--~~ 184 (266)
T PF03308_consen 123 DVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIMEI-------ADIFVVNKADR----PGA--DR 184 (266)
T ss_dssp SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH--------SEEEEE--SH----HHH--HH
T ss_pred CEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhhhh-------ccEEEEeCCCh----HHH--HH
Confidence 356677765 3331 1245689999999876656555444322222 23899999994 221 22
Q ss_pred hHHHHHHHHHH-------hCCeEEEEcCCCCcCHHHHHHHHHH
Q 041042 211 IASQARAYAKA-------LNATLFFSSATYNINVNKILKFITA 246 (268)
Q Consensus 211 ~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~f~~l~~ 246 (268)
...+.+..... +..+.+.|||.++.||+++++.|.+
T Consensus 185 ~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~ 227 (266)
T PF03308_consen 185 TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDE 227 (266)
T ss_dssp HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 22222222221 2247899999999999999999875
No 343
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.34 E-value=1.3e-06 Score=70.00 Aligned_cols=54 Identities=15% Similarity=0.381 Sum_probs=38.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEK-EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G 141 (268)
.++++++|.+|||||||+|++.+... .....| |.+.....+.++. .+.++||||
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~p--g~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATP--GVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCC--CeEcceEEEEeCC---CEEEEECcC
Confidence 48999999999999999999998653 333333 4444333444432 477999998
No 344
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.34 E-value=1.6e-06 Score=68.23 Aligned_cols=54 Identities=13% Similarity=0.274 Sum_probs=35.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEK-EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G 141 (268)
.++|+++|.+|||||||+|++.+... .....+ |.+.....+..+. .+.+.||||
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~--g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIP--GETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCC--CeeEeEEEEEcCC---CEEEEECcC
Confidence 47899999999999999999988653 222222 3332222233222 256899998
No 345
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=5.2e-06 Score=70.43 Aligned_cols=163 Identities=12% Similarity=0.139 Sum_probs=101.0
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcC----------CCCC----CCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccc
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGD----------EKEQ----GGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKA 145 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~----------~~~~----~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 145 (268)
....++|..+|.-.-|||||...+..- .|.+ .....-|.+.....+.+...+-.+-..|++|+..|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 344689999999999999998877431 1111 11112355666666666666666788999999888
Q ss_pred ccchhhhhcCCcEEEEEEeCCChh---hHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCcc-chhchHHHHHHHHH
Q 041042 146 QDHLPVACKDSIAILFMFDLTSRC---TLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPID-LQWTIASQARAYAK 220 (268)
Q Consensus 146 ~~~~~~~~~~a~~vilv~D~~~~~---s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~-~~~~~~~~~~~~~~ 220 (268)
-...-.-....|+.|||+.++|.. +-+.+- ..++ -..|- +++.||+|+ ..+. ....+..+++++..
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL----larq--vGvp~ivvflnK~Dm---vdd~ellelVemEvreLLs 159 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHIL----LARQ--VGVPYIVVFLNKVDM---VDDEELLELVEMEVRELLS 159 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh----hhhh--cCCcEEEEEEecccc---cCcHHHHHHHHHHHHHHHH
Confidence 433222334679999999988743 333221 1111 13444 488999998 4432 23344778899999
Q ss_pred HhCCe-----EEEEcCCCC--------cCHHHHHHHHHHHHhcC
Q 041042 221 ALNAT-----LFFSSATYN--------INVNKILKFITAKLFDI 251 (268)
Q Consensus 221 ~~~~~-----~~~~Sa~~~--------~~i~~~f~~l~~~i~~~ 251 (268)
+++++ ++.-||..- ..|.++++.+-..+...
T Consensus 160 ~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~P 203 (394)
T COG0050 160 EYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTP 203 (394)
T ss_pred HcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCC
Confidence 99864 666665421 12556665555554443
No 346
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.25 E-value=3e-06 Score=73.13 Aligned_cols=56 Identities=13% Similarity=0.345 Sum_probs=39.7
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCc
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEK-EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGD 142 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 142 (268)
..++++++|.+|||||||+|++.+... ..... .|.+.....+.++. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~--~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNR--PGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCC--CCeecceEEEEeCC---CEEEEECCCc
Confidence 358999999999999999999998763 22222 24444444444432 3689999996
No 347
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.22 E-value=4.5e-06 Score=72.40 Aligned_cols=57 Identities=16% Similarity=0.408 Sum_probs=40.4
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcc
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEK-EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 143 (268)
..++++++|.+|||||||+|++.+... .....+ |.+.....+.+++ .+.++||||-.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~--g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRP--GVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCC--CeEEEEEEEEeCC---cEEEEECCCcC
Confidence 358999999999999999999998764 233333 4444434444443 36799999963
No 348
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.22 E-value=4.1e-06 Score=66.94 Aligned_cols=92 Identities=15% Similarity=0.016 Sum_probs=60.0
Q ss_pred ccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCe
Q 041042 146 QDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNAT 225 (268)
Q Consensus 146 ~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (268)
.......+.+||.+++|+|++++..-.. ..+.+.+ .+.++++|.||+|+ .+. ... ....++.+..+..
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~----~~k~~ilVlNK~Dl---~~~---~~~-~~~~~~~~~~~~~ 77 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL----GNKPRIIVLNKADL---ADP---KKT-KKWLKYFESKGEK 77 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh----cCCCEEEEEehhhc---CCh---HHH-HHHHHHHHhcCCe
Confidence 3344667889999999999987643221 1122221 24567899999997 221 111 1121233334567
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHHh
Q 041042 226 LFFSSATYNINVNKILKFITAKLF 249 (268)
Q Consensus 226 ~~~~Sa~~~~~i~~~f~~l~~~i~ 249 (268)
++.+||+++.|++++.+.+...+.
T Consensus 78 vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 78 VLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred EEEEECCCcccHHHHHHHHHHHHH
Confidence 899999999999999999988753
No 349
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.21 E-value=1.5e-05 Score=68.10 Aligned_cols=104 Identities=13% Similarity=0.020 Sum_probs=58.6
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhch
Q 041042 132 ISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTI 211 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~ 211 (268)
+.+.|.+|.|--+-. -....-+|.+++|.=..-.+..+-++.=+-++ --|+|.||.|. ........
T Consensus 144 ~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi-------aDi~vINKaD~----~~A~~a~r 209 (323)
T COG1703 144 YDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEI-------ADIIVINKADR----KGAEKAAR 209 (323)
T ss_pred CCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhh-------hheeeEeccCh----hhHHHHHH
Confidence 346677777632211 11234678888887655555555544322222 23899999994 22111111
Q ss_pred -HHHHHHHHH------HhCCeEEEEcCCCCcCHHHHHHHHHHHHh
Q 041042 212 -ASQARAYAK------ALNATLFFSSATYNINVNKILKFITAKLF 249 (268)
Q Consensus 212 -~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~f~~l~~~i~ 249 (268)
...+.++.. .+.-+.+.|||.+|+|++++++.+.+...
T Consensus 210 ~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 210 ELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred HHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 111111111 12346899999999999999999876443
No 350
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.20 E-value=6.5e-06 Score=63.64 Aligned_cols=76 Identities=16% Similarity=0.105 Sum_probs=52.3
Q ss_pred hhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEE
Q 041042 151 VACKDSIAILFMFDLTSRCTLK--SVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFF 228 (268)
Q Consensus 151 ~~~~~a~~vilv~D~~~~~s~~--~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (268)
..+..+|++++|+|+.++.+.. .+.+|+... ..+.++++|.||+|+ .++ . ...+..++.+..+..+++
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL---~~~---~-~~~~~~~~~~~~~~~ii~ 76 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADL---LTE---E-QRKAWAEYFKKEGIVVVF 76 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhc---CCH---H-HHHHHHHHHHhcCCeEEE
Confidence 4578899999999998876544 444555433 245677899999997 222 1 123444556666788999
Q ss_pred EcCCCCcC
Q 041042 229 SSATYNIN 236 (268)
Q Consensus 229 ~Sa~~~~~ 236 (268)
+||+++.+
T Consensus 77 iSa~~~~~ 84 (141)
T cd01857 77 FSALKENA 84 (141)
T ss_pred EEecCCCc
Confidence 99998764
No 351
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.19 E-value=2.9e-06 Score=68.97 Aligned_cols=53 Identities=11% Similarity=0.343 Sum_probs=36.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCC---------CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEK---------EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~---------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G 141 (268)
..++++|.+|||||||+|.+.+... .....+ |.+.....+.++. .+.++||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIP--GTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCC--CeeeeeEEEecCC---CCEEEeCcC
Confidence 5899999999999999999987542 122222 3344444444443 368999998
No 352
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=1.2e-05 Score=70.19 Aligned_cols=111 Identities=18% Similarity=0.182 Sum_probs=71.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCC---CCCCcceeeEEEEEE------ECCeE-----------------------
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQG---GSPGEGLNMMDKTLL------VRGAR----------------------- 131 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~---~~~t~~~~~~~~~~~------~~~~~----------------------- 131 (268)
-=|+++|.-..||||+|+-++...|..- ..||+ ++....+. ++|..
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTt--d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTT--DRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCc--ceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 4589999999999999999999887542 22332 22211111 11111
Q ss_pred ----------EEEEEEeCCCcc-----------ccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCce
Q 041042 132 ----------ISYSIWEVTGDA-----------KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP 190 (268)
Q Consensus 132 ----------~~l~i~Dt~G~~-----------~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ 190 (268)
-.+.|.||+|.- .|....+-|...+|.+|++||....+--++....+..++- ..--
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG---~Edk 213 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG---HEDK 213 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC---Ccce
Confidence 147799999932 2445567778999999999998665543444444444433 2233
Q ss_pred E-EEEeCCCC
Q 041042 191 I-IIGTKFDD 199 (268)
Q Consensus 191 i-lvgnK~Dl 199 (268)
| ||.||.|.
T Consensus 214 iRVVLNKADq 223 (532)
T KOG1954|consen 214 IRVVLNKADQ 223 (532)
T ss_pred eEEEeccccc
Confidence 5 99999995
No 353
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=2.2e-05 Score=68.74 Aligned_cols=161 Identities=14% Similarity=0.169 Sum_probs=91.3
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCC-----------------------CCCCcceeeEEEEEEEC--------
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQG-----------------------GSPGEGLNMMDKTLLVR-------- 128 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~-----------------------~~~t~~~~~~~~~~~~~-------- 128 (268)
.-.+++++++|...+|||||+--+..++.+.. ...++|.+...+.+.+.
T Consensus 164 qfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi 243 (591)
T KOG1143|consen 164 QFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI 243 (591)
T ss_pred cceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHH
Confidence 56689999999999999999987765443221 11123444333333332
Q ss_pred --CeEEEEEEEeCCCccccccchhhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCC
Q 041042 129 --GARISYSIWEVTGDAKAQDHLPVACK--DSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLP 204 (268)
Q Consensus 129 --~~~~~l~i~Dt~G~~~~~~~~~~~~~--~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~ 204 (268)
.....+.++|.+|+.+|....-+-+. ..|..++|+++.....+.. ++-+..+... +.|.+|+.+|.||.....
T Consensus 244 ~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL--~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 244 VEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL--NIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred HhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh--CCCeEEEEEeeccccchh
Confidence 12235779999999998655433322 3577788887765444322 2222233222 445579999999742100
Q ss_pred cc------------------chhch-HHHH----HHHHHHhCCeEEEEcCCCCcCHHHHHHH
Q 041042 205 ID------------------LQWTI-ASQA----RAYAKALNATLFFSSATYNINVNKILKF 243 (268)
Q Consensus 205 ~~------------------~~~~~-~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~~f~~ 243 (268)
-+ ...+. ..++ ++.+...-.|+|.+|+.+|+|++-+...
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f 382 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF 382 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence 00 00011 2222 2222222357899999999998765433
No 354
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.15 E-value=5e-06 Score=73.24 Aligned_cols=56 Identities=13% Similarity=0.342 Sum_probs=41.6
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCc
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEK-EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGD 142 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 142 (268)
..+++.++|-||||||||||+|.+... .....| |.+-....+.++.. +.++||||-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCCC---eEEecCCCc
Confidence 347899999999999999999999864 223333 55555555555543 779999994
No 355
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.13 E-value=1.1e-05 Score=71.76 Aligned_cols=83 Identities=10% Similarity=0.054 Sum_probs=55.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCC-CCCCCCCcceeeEEEEEEECCe---------------EEEEEEEeCCCcccc--
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEK-EQGGSPGEGLNMMDKTLLVRGA---------------RISYSIWEVTGDAKA-- 145 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~-- 145 (268)
+|+.|+|.||||||||++.+++... ...+.|-...+-....+.+.+. ...+++.|.||.-.-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7999999999999999999998865 4333332212222334444432 236789999995432
Q ss_pred --ccchhh---hhcCCcEEEEEEeCC
Q 041042 146 --QDHLPV---ACKDSIAILFMFDLT 166 (268)
Q Consensus 146 --~~~~~~---~~~~a~~vilv~D~~ 166 (268)
..+... .++.+|+++.|+|..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 223333 368899999999974
No 356
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.12 E-value=1.7e-05 Score=81.13 Aligned_cols=109 Identities=16% Similarity=0.120 Sum_probs=64.1
Q ss_pred EEEEcCCCChHHHHHHHHhcCCCCCCC------CCCcceeeEEEEEEECCeEEEEEEEeCCCcc--------ccccchhh
Q 041042 86 ISLLGDCHIGKTSFLEKYVGDEKEQGG------SPGEGLNMMDKTLLVRGARISYSIWEVTGDA--------KAQDHLPV 151 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~--------~~~~~~~~ 151 (268)
.+|||++|+||||+|++- +-.|.-.. ..+++.+.. ...-+.+ .-.++||+|.. .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 689999999999999986 33332211 111221111 1111122 24489999921 22233444
Q ss_pred hh---------cCCcEEEEEEeCCChhh-----H----HHHHHHHHHHHHhCCCCceE-EEEeCCCC
Q 041042 152 AC---------KDSIAILFMFDLTSRCT-----L----KSVIRWYQQARKCNQTAIPI-IIGTKFDD 199 (268)
Q Consensus 152 ~~---------~~a~~vilv~D~~~~~s-----~----~~~~~~~~~i~~~~~~~~~i-lvgnK~Dl 199 (268)
++ +..|+||+++|+.+.-+ . ..++..++++.+.-.-..|| ||.||+|+
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dl 255 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADL 255 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchh
Confidence 43 35799999999765321 1 24445666666665555555 99999998
No 357
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=6.3e-05 Score=70.46 Aligned_cols=114 Identities=11% Similarity=0.251 Sum_probs=68.5
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCC-CCCCcceeeEE-------------------------------------
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQG-GSPGEGLNMMD------------------------------------- 122 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~-~~~t~~~~~~~------------------------------------- 122 (268)
....||++.|+.+.||||++|.++.++.-+. ..+++. -|..
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~Tn-cF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTN-CFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccce-eeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 3468999999999999999999987543221 111110 0000
Q ss_pred ------EEEEECCeEE-----EEEEEeCCCcc---ccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCC
Q 041042 123 ------KTLLVRGARI-----SYSIWEVTGDA---KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTA 188 (268)
Q Consensus 123 ------~~~~~~~~~~-----~l~i~Dt~G~~---~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~ 188 (268)
-.+.++.... .+.+.|.+|-. ...+-...++.++|++|+|..+.+.-+..+- .++..+.+ ..
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~---~K 261 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSE---EK 261 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhc---cC
Confidence 0111111111 25577888843 3344556778999999999998776655442 33333322 34
Q ss_pred ceE-EEEeCCCC
Q 041042 189 IPI-IIGTKFDD 199 (268)
Q Consensus 189 ~~i-lvgnK~Dl 199 (268)
|-| |+-||+|.
T Consensus 262 pniFIlnnkwDa 273 (749)
T KOG0448|consen 262 PNIFILNNKWDA 273 (749)
T ss_pred CcEEEEechhhh
Confidence 445 89999996
No 358
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.05 E-value=1.7e-05 Score=68.58 Aligned_cols=85 Identities=15% Similarity=0.196 Sum_probs=58.7
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEEC---------------CeEEEEEEEeCCCccc--
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVR---------------GARISYSIWEVTGDAK-- 144 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~---------------~~~~~l~i~Dt~G~~~-- 144 (268)
..+|+-++|.||||||||+|.+.+........|-...+-..-.+.+. .....++++|++|.-+
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 45899999999999999999999987666655532223222233331 1346799999998543
Q ss_pred --cccchhhh---hcCCcEEEEEEeCC
Q 041042 145 --AQDHLPVA---CKDSIAILFMFDLT 166 (268)
Q Consensus 145 --~~~~~~~~---~~~a~~vilv~D~~ 166 (268)
-..+-..| ++.+|+++-|+++.
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEec
Confidence 23444555 57899999888764
No 359
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.03 E-value=2.7e-05 Score=67.22 Aligned_cols=91 Identities=14% Similarity=0.027 Sum_probs=59.6
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEE
Q 041042 149 LPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFF 228 (268)
Q Consensus 149 ~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (268)
....++.+|++++|.|+.++.+-.+ .++.... .+.+.|+|.||+|| .+. ..... ..++.+..+.+++.
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l---~~kp~IiVlNK~DL---~~~---~~~~~-~~~~~~~~~~~vi~ 82 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR---GNKPRLIVLNKADL---ADP---AVTKQ-WLKYFEEKGIKALA 82 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH---CCCCEEEEEEcccc---CCH---HHHHH-HHHHHHHcCCeEEE
Confidence 4556789999999999977644322 1122221 24566899999997 221 11111 11222335678899
Q ss_pred EcCCCCcCHHHHHHHHHHHHhcC
Q 041042 229 SSATYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 229 ~Sa~~~~~i~~~f~~l~~~i~~~ 251 (268)
+||+++.|++++.+.+.+.+.+.
T Consensus 83 iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 83 INAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred EECCCcccHHHHHHHHHHHHHHh
Confidence 99999999999999988776543
No 360
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.94 E-value=4.8e-05 Score=63.61 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=52.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcC--CCCCC---CCCCcceeeEEEEEEECCeEEEEEEEeCCCcccccc------chhh
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGD--EKEQG---GSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQD------HLPV 151 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~--~~~~~---~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------~~~~ 151 (268)
..-|.|+|.+++|||+|+|++.+. .|... ...|.|+-.....+. .+....+.++||+|...... ..-.
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~-~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFK-LGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEecccc-CCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 356789999999999999999998 66432 223445433322221 13456789999999654221 1112
Q ss_pred hhcC--CcEEEEEEeCCChh
Q 041042 152 ACKD--SIAILFMFDLTSRC 169 (268)
Q Consensus 152 ~~~~--a~~vilv~D~~~~~ 169 (268)
.+.. ++++|+..+.....
T Consensus 86 ~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 86 ALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHhCEEEEeccCcccH
Confidence 2223 77888777765443
No 361
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.91 E-value=2.7e-05 Score=61.16 Aligned_cols=55 Identities=16% Similarity=0.388 Sum_probs=36.3
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEK-EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G 141 (268)
....++++|.+|||||||+|.+.+... .....+.+. .....+..+ ..+.+.||||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t--~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTT--TSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcc--cceEEEEec---CCEEEEECCC
Confidence 357899999999999999999998652 222222222 222223332 2478999998
No 362
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.89 E-value=4.1e-05 Score=67.30 Aligned_cols=93 Identities=18% Similarity=0.203 Sum_probs=55.6
Q ss_pred EEEEEEEeCCCccccccc----hhhh--------hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCC
Q 041042 131 RISYSIWEVTGDAKAQDH----LPVA--------CKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKF 197 (268)
Q Consensus 131 ~~~l~i~Dt~G~~~~~~~----~~~~--------~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~ 197 (268)
.+.+.+.||+|....... ...+ -...+..++|.|++... +.+.. +..+.....+ -+|.||.
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~----a~~f~~~~~~~giIlTKl 269 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ----AKAFHEAVGLTGIILTKL 269 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH----HHHHHhhCCCCEEEEECC
Confidence 356889999996432211 1111 12467889999987432 22221 2222112233 5999999
Q ss_pred CCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 198 DDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 198 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
|.. .+ .-.+..++...++|+..++ +|++++++
T Consensus 270 D~t------~~---~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 270 DGT------AK---GGVVFAIADELGIPIKFIG--VGEGIDDL 301 (318)
T ss_pred CCC------CC---ccHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence 941 11 2345566777899999988 88888776
No 363
>PRK01889 GTPase RsgA; Reviewed
Probab=97.89 E-value=8.3e-05 Score=66.48 Aligned_cols=85 Identities=16% Similarity=0.175 Sum_probs=59.4
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcC
Q 041042 152 ACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSA 231 (268)
Q Consensus 152 ~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 231 (268)
...++|.+++|+++...-....+.+++..+... +.+|+||.||+|| .++ .....+....+ ..+.+++.+|+
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~--~i~piIVLNK~DL---~~~--~~~~~~~~~~~--~~g~~Vi~vSa 179 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES--GAEPVIVLTKADL---CED--AEEKIAEVEAL--APGVPVLAVSA 179 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc--CCCEEEEEEChhc---CCC--HHHHHHHHHHh--CCCCcEEEEEC
Confidence 357899999999996544555666766665543 5577999999998 322 11112223333 45788999999
Q ss_pred CCCcCHHHHHHHHH
Q 041042 232 TYNINVNKILKFIT 245 (268)
Q Consensus 232 ~~~~~i~~~f~~l~ 245 (268)
++|.|++++..++.
T Consensus 180 ~~g~gl~~L~~~L~ 193 (356)
T PRK01889 180 LDGEGLDVLAAWLS 193 (356)
T ss_pred CCCccHHHHHHHhh
Confidence 99999999988874
No 364
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.86 E-value=7.8e-05 Score=64.69 Aligned_cols=91 Identities=14% Similarity=0.004 Sum_probs=59.9
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEE
Q 041042 149 LPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFF 228 (268)
Q Consensus 149 ~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (268)
....+..+|++|+|+|+.++.+.++ .++.... .+.+.++|.||+|| .+. ... +...++.++.+.+++.
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~~kp~iiVlNK~DL---~~~---~~~-~~~~~~~~~~~~~vi~ 85 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---GNKPRLLILNKSDL---ADP---EVT-KKWIEYFEEQGIKALA 85 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---CCCCEEEEEEchhc---CCH---HHH-HHHHHHHHHcCCeEEE
Confidence 4556789999999999977654322 1222222 24566899999997 221 111 1222223344678899
Q ss_pred EcCCCCcCHHHHHHHHHHHHhcC
Q 041042 229 SSATYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 229 ~Sa~~~~~i~~~f~~l~~~i~~~ 251 (268)
+||+++.|++++.+.+.+.+.+.
T Consensus 86 vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 86 INAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred EECCCcccHHHHHHHHHHHHHHH
Confidence 99999999999999887776443
No 365
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=5.9e-05 Score=63.66 Aligned_cols=60 Identities=18% Similarity=0.333 Sum_probs=46.5
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCC----CCCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQG----GSPGEGLNMMDKTLLVRGARISYSIWEVTG 141 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G 141 (268)
-.+.|+.+|..|.|||||+..+.+-.|... ..|++.....++.+.-.+..+++.+.||.|
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 369999999999999999999998876443 444555444445555567788999999998
No 366
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.83 E-value=2.1e-05 Score=61.96 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDE 107 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~ 107 (268)
-++++|.+|||||||+|.+....
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68899999999999999998863
No 367
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=0.0002 Score=62.22 Aligned_cols=150 Identities=11% Similarity=0.097 Sum_probs=91.5
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhc-------CC---CCC----CCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccc
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVG-------DE---KEQ----GGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKA 145 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~-------~~---~~~----~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 145 (268)
+...++|--||.-.-|||||...+.. .+ |.+ .....-|.+.....+.+....-.+-=.|++|+.+|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 44568999999999999999877643 11 110 01112355566666666665556667899999887
Q ss_pred ccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccch-hchHHHHHHHHHHhC
Q 041042 146 QDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQ-WTIASQARAYAKALN 223 (268)
Q Consensus 146 ~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~ 223 (268)
-...-.--...|+.|+|+..+|..=-+ .++-+-..++. ..+- +|..||.|+ .++... +-++-+++++..++|
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~MPQ-TrEHlLLArQV--GV~~ivvfiNKvD~---V~d~e~leLVEmE~RElLse~g 204 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGPMPQ-TREHLLLARQV--GVKHIVVFINKVDL---VDDPEMLELVEMEIRELLSEFG 204 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCCCcc-hHHHHHHHHHc--CCceEEEEEecccc---cCCHHHHHHHHHHHHHHHHHcC
Confidence 432222234569999999998853211 11112222221 3333 477899997 533333 333677888999887
Q ss_pred C-----eEEEEc---CCCCc
Q 041042 224 A-----TLFFSS---ATYNI 235 (268)
Q Consensus 224 ~-----~~~~~S---a~~~~ 235 (268)
+ |++.=| |+.|.
T Consensus 205 f~Gd~~PvI~GSAL~ALeg~ 224 (449)
T KOG0460|consen 205 FDGDNTPVIRGSALCALEGR 224 (449)
T ss_pred CCCCCCCeeecchhhhhcCC
Confidence 4 677755 45553
No 368
>PRK12288 GTPase RsgA; Reviewed
Probab=97.81 E-value=5.1e-05 Score=67.48 Aligned_cols=58 Identities=12% Similarity=0.196 Sum_probs=35.1
Q ss_pred EEEEcCCCChHHHHHHHHhcCCC-CCCCCCC---cc--eeeEEEEEEECCeEEEEEEEeCCCccccc
Q 041042 86 ISLLGDCHIGKTSFLEKYVGDEK-EQGGSPG---EG--LNMMDKTLLVRGARISYSIWEVTGDAKAQ 146 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~~~-~~~~~~t---~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 146 (268)
++++|.+|||||||||+|.+... .....+. -| .+....-+.+++. ..++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 78999999999999999987642 2211111 11 1222223344322 2489999976643
No 369
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.81 E-value=0.00023 Score=62.59 Aligned_cols=29 Identities=14% Similarity=0.465 Sum_probs=23.9
Q ss_pred CCCCceeEEEEEEcCCCChHHHHHHHHhc
Q 041042 77 DADNLVALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 77 ~~~~~~~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
...+..+.+|+++|.-.+|||||+--+..
T Consensus 127 ~~~DF~E~RVAVVGNVDAGKSTLLGVLTH 155 (641)
T KOG0463|consen 127 TEKDFIEARVAVVGNVDAGKSTLLGVLTH 155 (641)
T ss_pred CCccceeEEEEEEecccCCcceeEeeeee
Confidence 34466789999999999999999876654
No 370
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.80 E-value=0.00011 Score=58.03 Aligned_cols=63 Identities=14% Similarity=-0.047 Sum_probs=36.7
Q ss_pred EEEEEEeCCCccccccchhh--------hhcCCcEEEEEEeCCChhhH-HHHHHHHHHHHHhCCCCceEEEEeCCCC
Q 041042 132 ISYSIWEVTGDAKAQDHLPV--------ACKDSIAILFMFDLTSRCTL-KSVIRWYQQARKCNQTAIPIIIGTKFDD 199 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~~~~~--------~~~~a~~vilv~D~~~~~s~-~~~~~~~~~i~~~~~~~~~ilvgnK~Dl 199 (268)
....+.||+|-..-..+... ..-..++++.+.|+.+.... .+...+..++.. .-+||.||+||
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~-----ad~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF-----ADRILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH-----CCEEEEecccC
Confidence 45678999996543333322 12357899999997653331 122233444432 23789999995
No 371
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.79 E-value=5.8e-05 Score=64.92 Aligned_cols=95 Identities=15% Similarity=0.148 Sum_probs=56.1
Q ss_pred EEEEEEEeCCCccccccch----hh---h-----hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCC
Q 041042 131 RISYSIWEVTGDAKAQDHL----PV---A-----CKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFD 198 (268)
Q Consensus 131 ~~~l~i~Dt~G~~~~~~~~----~~---~-----~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~D 198 (268)
.+.+.+.||+|........ .. . -..+|.+++|.|++-. .+.+. +...+.+.. .+--+|.||.|
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~--~~~g~IlTKlD 228 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV--GLTGIILTKLD 228 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC--CCCEEEEEccC
Confidence 3568899999965432211 11 1 1237899999998642 22322 222222211 12249999999
Q ss_pred CCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHH
Q 041042 199 DFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKIL 241 (268)
Q Consensus 199 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f 241 (268)
.. ...-.+..++...+.|+.+++ +|++++++-
T Consensus 229 e~---------~~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 229 GT---------AKGGIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CC---------CCccHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 41 112345556667789998887 888887763
No 372
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.77 E-value=0.00021 Score=64.73 Aligned_cols=119 Identities=17% Similarity=0.222 Sum_probs=74.6
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhh----------HHHHHHHHHHHHHh--CCCCceEEEEeCC
Q 041042 130 ARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCT----------LKSVIRWYQQARKC--NQTAIPIIIGTKF 197 (268)
Q Consensus 130 ~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s----------~~~~~~~~~~i~~~--~~~~~~ilvgnK~ 197 (268)
....+.++|++|+...+.-|-+++.++++||+|+++++-+- +.+.....+.+-.. -.+.++||+.||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 34557899999999888999999999999999999875321 22222333333222 1355668999999
Q ss_pred CCCC-CC----------Cccchh--chHHHHHHHHHH------------hCCeEEEEcCCCCcCHHHHHHHHHHHH
Q 041042 198 DDFI-QL----------PIDLQW--TIASQARAYAKA------------LNATLFFSSATYNINVNKILKFITAKL 248 (268)
Q Consensus 198 Dl~~-~~----------~~~~~~--~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~~~f~~l~~~i 248 (268)
|+.. ++ ++-... ...+.+..+... ..+-++.|+|.+-.++..+|+.+.+.|
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 9642 11 111011 223444444332 112345699999999999999887653
No 373
>PRK13695 putative NTPase; Provisional
Probab=97.75 E-value=0.00062 Score=54.43 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
+||++.|.+|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998653
No 374
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.0001 Score=69.77 Aligned_cols=111 Identities=18% Similarity=0.250 Sum_probs=79.6
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCC------------CCC--CCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccc
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDE------------KEQ--GGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQ 146 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~------------~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 146 (268)
...-.++++-.-.-|||||+..++... |.+ ....|-|.+..+..+..--+.+.++++|++|+-+|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 334578899999999999999886532 111 112234555555555555577889999999999999
Q ss_pred cchhhhhcCCcEEEEEEeCCChh---hHHHHH-HHHHHHHHhCCCCceEEEEeCCC
Q 041042 147 DHLPVACKDSIAILFMFDLTSRC---TLKSVI-RWYQQARKCNQTAIPIIIGTKFD 198 (268)
Q Consensus 147 ~~~~~~~~~a~~vilv~D~~~~~---s~~~~~-~~~~~i~~~~~~~~~ilvgnK~D 198 (268)
+......+-+|++++++|+...- +..-++ -|.+ +..||+|.||+|
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~-------~~~~~lvinkid 135 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE-------GLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc-------cCceEEEEehhh
Confidence 99999999999999999986542 222222 2332 556899999999
No 375
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=1.5e-05 Score=66.42 Aligned_cols=171 Identities=20% Similarity=0.286 Sum_probs=106.1
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEE-EEECCeEEEEEEEeCCCccccccchhhhhc----
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKT-LLVRGARISYSIWEVTGDAKAQDHLPVACK---- 154 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~---- 154 (268)
...+..|++.|..+ ||++|+++....- ....+|....|.... ..-++.+--.++|+.+|......+...-+.
T Consensus 42 ~~~E~~I~~~Gn~~--~tt~I~~~FdR~e-~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l 118 (363)
T KOG3929|consen 42 EKFEFFIGSKGNGG--KTTIILRCFDRDE-PPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTL 118 (363)
T ss_pred ccceeEEEEecCCc--eeEeehhhcCccc-CCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccch
Confidence 55578899999765 5999998876542 334455544442211 111223334679999997654443322222
Q ss_pred CCcEEEEEEeCCChhhH-HHHHHHHHHHHH----------------------h---------------CCCCce-EEEEe
Q 041042 155 DSIAILFMFDLTSRCTL-KSVIRWYQQARK----------------------C---------------NQTAIP-IIIGT 195 (268)
Q Consensus 155 ~a~~vilv~D~~~~~s~-~~~~~~~~~i~~----------------------~---------------~~~~~~-ilvgn 195 (268)
..-.+|++.|.++++.| -.+...++.+++ . ++-..| +|||.
T Consensus 119 ~~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgs 198 (363)
T KOG3929|consen 119 RTFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGS 198 (363)
T ss_pred hhhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEecc
Confidence 12367899999997642 222222222210 0 112234 69999
Q ss_pred CCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHHhcCcc
Q 041042 196 KFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDIPW 253 (268)
Q Consensus 196 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~i~~~~~ 253 (268)
|.|.+.....+.++....-++.+|..+|...+.-|++-..=...+.+.+.+..+....
T Consensus 199 KYDvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskMe~l~K~~r~~i~HlaFG~~~ 256 (363)
T KOG3929|consen 199 KYDVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKMEALLKKIRGVINHLAFGIDK 256 (363)
T ss_pred chhhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhhHHHhhcCCcC
Confidence 9998777777777777888889999999988888888666555666666666666553
No 376
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.73 E-value=0.00033 Score=60.30 Aligned_cols=93 Identities=12% Similarity=0.111 Sum_probs=67.0
Q ss_pred cchhhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCe
Q 041042 147 DHLPVACKDSIAILFMFDLTSRC-TLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNAT 225 (268)
Q Consensus 147 ~~~~~~~~~a~~vilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (268)
.+.+--+.+.|-+++|+.+.+++ +..-+.+++-.+.. .+..||||.||+|| +.++.... ++........|.+
T Consensus 71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~--~gi~pvIvlnK~DL---~~~~~~~~--~~~~~~y~~~gy~ 143 (301)
T COG1162 71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA--GGIEPVIVLNKIDL---LDDEEAAV--KELLREYEDIGYP 143 (301)
T ss_pred ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH--cCCcEEEEEEcccc---CcchHHHH--HHHHHHHHhCCee
Confidence 34444455678888888888776 55566666544433 46678999999998 44332222 5677778889999
Q ss_pred EEEEcCCCCcCHHHHHHHHHH
Q 041042 226 LFFSSATYNINVNKILKFITA 246 (268)
Q Consensus 226 ~~~~Sa~~~~~i~~~f~~l~~ 246 (268)
.+.+|++++.+++++...+..
T Consensus 144 v~~~s~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 144 VLFVSAKNGDGLEELAELLAG 164 (301)
T ss_pred EEEecCcCcccHHHHHHHhcC
Confidence 999999999999999887654
No 377
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.73 E-value=7.1e-05 Score=63.44 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=34.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCC-CCCCCC-----CcceeeEEEEEEECCeEEEEEEEeCCCcccc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEK-EQGGSP-----GEGLNMMDKTLLVRGARISYSIWEVTGDAKA 145 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~-~~~~~~-----t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 145 (268)
-.++++|.+|||||||+|++.+..- .....+ ....+.....+..++. .++||||-..+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCcccc
Confidence 3688999999999999999987532 111111 0111222223333332 58999997553
No 378
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.00036 Score=64.32 Aligned_cols=141 Identities=14% Similarity=0.146 Sum_probs=79.8
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
.+..+=++|+|+||+|||||++.++..--.. |+..-.. -...+.|++-++.+++++. ....+.. ..+-||.+
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~----ti~~i~G-PiTvvsgK~RRiTflEcp~--Dl~~miD-vaKIaDLV 137 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ----TIDEIRG-PITVVSGKTRRITFLECPS--DLHQMID-VAKIADLV 137 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHh----hhhccCC-ceEEeecceeEEEEEeChH--HHHHHHh-HHHhhhee
Confidence 3445888999999999999999887642111 1111011 1113567788899999882 3233332 23568999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCceE-EEEeCCCCCCCCCccchhchHH--HHHHHHHHh-CCeEEEEcCCC
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFDDFIQLPIDLQWTIAS--QARAYAKAL-NATLFFSSATY 233 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~i-lvgnK~Dl~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~Sa~~ 233 (268)
++++|..-.-..+. .++++.+..+ ..|-| -|.|..||+.+.+. -+..+. .-+-|.+-+ |+.+|..|-..
T Consensus 138 lLlIdgnfGfEMET-mEFLnil~~H--GmPrvlgV~ThlDlfk~~st--Lr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 138 LLLIDGNFGFEMET-MEFLNILISH--GMPRVLGVVTHLDLFKNPST--LRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred EEEeccccCceehH-HHHHHHHhhc--CCCceEEEEeecccccChHH--HHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 99999753211111 2344444433 23335 78999998533221 111111 113344444 78888888653
No 379
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.70 E-value=8.3e-05 Score=66.62 Aligned_cols=56 Identities=16% Similarity=0.325 Sum_probs=36.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCC------CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEK------EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK 144 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 144 (268)
.+++++|.+|||||||+|++.+... .....| |.+.....+.+++. +.++||||-..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~p--gtT~~~~~~~~~~~---~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFP--GTTLDLIEIPLDDG---HSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCC--CeEeeEEEEEeCCC---CEEEECCCCCC
Confidence 4899999999999999999987532 222223 22333333444222 46999999543
No 380
>PRK13796 GTPase YqeH; Provisional
Probab=97.70 E-value=6.8e-05 Score=67.29 Aligned_cols=55 Identities=11% Similarity=0.309 Sum_probs=36.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCC------CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEK------EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 143 (268)
.++.++|.+|||||||+|++..... .....| |.+.....+.+++. ..++||||-.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~p--GTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFP--GTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCC--CccceeEEEEcCCC---cEEEECCCcc
Confidence 4799999999999999999985421 112223 33333344444433 3589999964
No 381
>PRK14974 cell division protein FtsY; Provisional
Probab=97.67 E-value=0.00037 Score=61.63 Aligned_cols=92 Identities=17% Similarity=0.222 Sum_probs=55.3
Q ss_pred EEEEEEeCCCcccccc-c---hhhhh--cCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhCCC-CceEEEEeCCCCCCCC
Q 041042 132 ISYSIWEVTGDAKAQD-H---LPVAC--KDSIAILFMFDLTSRC-TLKSVIRWYQQARKCNQT-AIPIIIGTKFDDFIQL 203 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~-~---~~~~~--~~a~~vilv~D~~~~~-s~~~~~~~~~~i~~~~~~-~~~ilvgnK~Dl~~~~ 203 (268)
+.+.+.||+|...... + ...+. ...|.+++|.|++... ..+. +..+... .+--+|.||.|...
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~-------a~~f~~~~~~~giIlTKlD~~~-- 293 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQ-------AREFNEAVGIDGVILTKVDADA-- 293 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHH-------HHHHHhcCCCCEEEEeeecCCC--
Confidence 4588999999654211 1 12222 2578899999986532 2222 2222211 23359999999521
Q ss_pred CccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHH
Q 041042 204 PIDLQWTIASQARAYAKALNATLFFSSATYNINVNKIL 241 (268)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f 241 (268)
..-.+..++...+.|+..++ +|++++++.
T Consensus 294 -------~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 294 -------KGGAALSIAYVIGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred -------CccHHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence 12334555666789988887 799998774
No 382
>PRK12289 GTPase RsgA; Reviewed
Probab=97.64 E-value=9.9e-05 Score=65.70 Aligned_cols=57 Identities=16% Similarity=0.269 Sum_probs=34.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCC-CCCCCCC---cc--eeeEEEEEEECCeEEEEEEEeCCCccc
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEK-EQGGSPG---EG--LNMMDKTLLVRGARISYSIWEVTGDAK 144 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~-~~~~~~t---~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 144 (268)
-++|+|.+|||||||||.|.++.- .....+. -| .+.....+..++.. .++||||-..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence 379999999999999999987542 1111111 01 12222333343222 5899999554
No 383
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=4.9e-05 Score=64.92 Aligned_cols=163 Identities=15% Similarity=0.160 Sum_probs=97.4
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCC---CCCCCCC--CcceeeEEEE-EEE--------------------------CC
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDE---KEQGGSP--GEGLNMMDKT-LLV--------------------------RG 129 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~---~~~~~~~--t~~~~~~~~~-~~~--------------------------~~ 129 (268)
-.++|--+|.-.-||||+++.+.+-. |...... |+...|..-. +.- .|
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 35899999999999999999886531 2222111 1111111100 000 01
Q ss_pred --eE----EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChh----hHHHHHHHHHHHHHhCCCCceEEEEeCCCC
Q 041042 130 --AR----ISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRC----TLKSVIRWYQQARKCNQTAIPIIIGTKFDD 199 (268)
Q Consensus 130 --~~----~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~----s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl 199 (268)
.+ -.+.|.|++|++-..+..-.-..-.|++++++..+..+ +-+.+.. . ++.+ -.-++++-||+||
T Consensus 117 ~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa-v-eiM~---LkhiiilQNKiDl 191 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA-V-EIMK---LKHIIILQNKIDL 191 (466)
T ss_pred CCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH-H-HHhh---hceEEEEechhhh
Confidence 01 23568999998764332211112247777777665432 3333221 1 1111 2235689999998
Q ss_pred CCCCCccchhchHHHHHHHHHHh---CCeEEEEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 200 FIQLPIDLQWTIASQARAYAKAL---NATLFFSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
+.++.-....++++.|.+.. +.+++.+||....||+-+.++|++.+....
T Consensus 192 ---i~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPv 244 (466)
T KOG0466|consen 192 ---IKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV 244 (466)
T ss_pred ---hhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence 44444444467777787754 578999999999999999999999887654
No 384
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.61 E-value=0.0005 Score=62.57 Aligned_cols=139 Identities=14% Similarity=0.062 Sum_probs=72.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhc------CCC---CC-CCC-----------CCcceeeEEEEEEEC-------------C
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG------DEK---EQ-GGS-----------PGEGLNMMDKTLLVR-------------G 129 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~------~~~---~~-~~~-----------~t~~~~~~~~~~~~~-------------~ 129 (268)
.-|+++|.+||||||++..+.. .+. .. .+. ...+..+....-..+ .
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~ 180 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKK 180 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999988852 110 01 111 011222221000000 0
Q ss_pred eEEEEEEEeCCCcccccc-ch---hhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCC
Q 041042 130 ARISYSIWEVTGDAKAQD-HL---PVA--CKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQ 202 (268)
Q Consensus 130 ~~~~l~i~Dt~G~~~~~~-~~---~~~--~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~ 202 (268)
..+.+.|+||+|...... +. ..+ ....+.+++|.|++-...- ....+.+ .....+ -+|.||.|..
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F---~~~~~~~g~IlTKlD~~-- 252 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAF---KDSVDVGSVIITKLDGH-- 252 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHH---HhccCCcEEEEECccCC--
Confidence 245788999999543321 11 111 2356789999998643221 1112222 222233 5999999941
Q ss_pred CCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 203 LPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
. ..-.+.......+.|+.+++ +|+++++
T Consensus 253 ----a---rgG~aLs~~~~t~~PI~fig--~Ge~v~D 280 (429)
T TIGR01425 253 ----A---KGGGALSAVAATKSPIIFIG--TGEHIDD 280 (429)
T ss_pred ----C---CccHHhhhHHHHCCCeEEEc--CCCChhh
Confidence 1 12234555666777766654 3444444
No 385
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.59 E-value=0.00014 Score=62.67 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=34.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCC------CCCCCCCCcceeeEEEEEEEC-CeEEEEEEEeCCCcccc
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDE------KEQGGSPGEGLNMMDKTLLVR-GARISYSIWEVTGDAKA 145 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~------~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~ 145 (268)
-.+++|.+|||||||+|++..+. ........-..+....-+.++ |. .+.||||...+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG----~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG----WIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC----EEEeCCCCCcc
Confidence 57899999999999999998632 111111111122333444553 33 37899997664
No 386
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00065 Score=60.83 Aligned_cols=154 Identities=16% Similarity=0.133 Sum_probs=79.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCC---CCCCCCCCc--------------------ceeeEEEEEEE---------CCeE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDE---KEQGGSPGE--------------------GLNMMDKTLLV---------RGAR 131 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~---~~~~~~~t~--------------------~~~~~~~~~~~---------~~~~ 131 (268)
--++++|++||||||++.++...- +......-+ |..+. .+.- .-..
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~--~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH--AVKDGGDLQLALAELRN 215 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE--ecCCcccHHHHHHHhcC
Confidence 468899999999999999986531 100000000 11111 0100 0123
Q ss_pred EEEEEEeCCCccccccch----hhh--hcCCcEEEEEEeCCC-hhhHHHHHHHHHHHHHh-CCCCc-e-EEEEeCCCCCC
Q 041042 132 ISYSIWEVTGDAKAQDHL----PVA--CKDSIAILFMFDLTS-RCTLKSVIRWYQQARKC-NQTAI-P-IIIGTKFDDFI 201 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~~~----~~~--~~~a~~vilv~D~~~-~~s~~~~~~~~~~i~~~-~~~~~-~-ilvgnK~Dl~~ 201 (268)
..+.++||+|...+.... ... .....-.++|.+.+. .+....+..-+...... ....+ + =+|.||.|-.
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt- 294 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA- 294 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC-
Confidence 468899999965433221 111 122345688888765 34444433222222111 11112 2 3889999941
Q ss_pred CCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH-----HHHHHHHHhc
Q 041042 202 QLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKI-----LKFITAKLFD 250 (268)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~-----f~~l~~~i~~ 250 (268)
...-.+..++...+.++..++ +|++|.+= -+.|++.++.
T Consensus 295 --------~~~G~~l~~~~~~~lPi~yvt--~Gq~VPedl~~a~~~~l~~~~~~ 338 (374)
T PRK14722 295 --------SNLGGVLDTVIRYKLPVHYVS--TGQKVPENLYVATKKFLLKSAFC 338 (374)
T ss_pred --------CCccHHHHHHHHHCcCeEEEe--cCCCCCcccccCCHHHHHHHHhc
Confidence 124556777888888877764 44444431 2334555554
No 387
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.52 E-value=0.0044 Score=48.48 Aligned_cols=56 Identities=27% Similarity=0.438 Sum_probs=40.8
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCC
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVT 140 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~ 140 (268)
..+||.+.|.||||||||+.++.+.--...+ ++| -|...++.-+|+.+-|.+.|++
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~--kvg-Gf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGY--KVG-GFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCc--eee-eEEeeeeecCCeEeeeEEEEcc
Confidence 3589999999999999999998643111111 122 3666777778888888899987
No 388
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.49 E-value=0.00085 Score=53.51 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=45.1
Q ss_pred EEEEEEeCCCccccc----cchhhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCc
Q 041042 132 ISYSIWEVTGDAKAQ----DHLPVAC--KDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPI 205 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~----~~~~~~~--~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~ 205 (268)
..+.+.|++|...+. .....+. ...+.+++|+|..... +...+...+.+... .--+|.||.|..
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~~--~~~viltk~D~~----- 152 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEALG--ITGVILTKLDGD----- 152 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhCC--CCEEEEECCcCC-----
Confidence 457789999964321 1111111 3489999999986433 22234444433222 334788999952
Q ss_pred cchhchHHHHHHHHHHhCCeEEE
Q 041042 206 DLQWTIASQARAYAKALNATLFF 228 (268)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ 228 (268)
.....+...+...++|+..
T Consensus 153 ----~~~g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 153 ----ARGGAALSIRAVTGKPIKF 171 (173)
T ss_pred ----CCcchhhhhHHHHCcCeEe
Confidence 1122233467777776544
No 389
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.42 E-value=0.0004 Score=60.28 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=36.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCC-CCCC-----CcceeeEEEEEEECCeEEEEEEEeCCCcccc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQ-GGSP-----GEGLNMMDKTLLVRGARISYSIWEVTGDAKA 145 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~-~~~~-----t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 145 (268)
-.++++|.+|||||||+|.+.+..... ...+ ..+.+.....+...+. ..++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 468999999999999999998864221 1111 1111222233333321 248999998664
No 390
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.39 E-value=0.0012 Score=50.76 Aligned_cols=104 Identities=10% Similarity=0.003 Sum_probs=60.7
Q ss_pred EEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCC
Q 041042 88 LLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTS 167 (268)
Q Consensus 88 vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~ 167 (268)
.-|.+|+|||++...+...- ......+.-.|... ......+.+.++|+++.. .......+..+|.++++.+.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~-~~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~- 77 (139)
T cd02038 5 TSGKGGVGKTNISANLALAL-AKLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE- 77 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHH-HHCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-
Confidence 45678999999976653321 01111111111110 000111568899999743 333456788999999999875
Q ss_pred hhhHHHHHHHHHHHHHhCCCCceEEEEeCCC
Q 041042 168 RCTLKSVIRWYQQARKCNQTAIPIIIGTKFD 198 (268)
Q Consensus 168 ~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~D 198 (268)
..++..+...++.+..........+|.|+.+
T Consensus 78 ~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~ 108 (139)
T cd02038 78 PTSITDAYALIKKLAKQLRVLNFRVVVNRAE 108 (139)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 5556665555555554443344459999998
No 391
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.36 E-value=0.0018 Score=60.24 Aligned_cols=136 Identities=12% Similarity=0.089 Sum_probs=72.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC--------CC---CCC-CC-----------CCcceeeEEEEEEE---------CCeE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD--------EK---EQG-GS-----------PGEGLNMMDKTLLV---------RGAR 131 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~--------~~---~~~-~~-----------~t~~~~~~~~~~~~---------~~~~ 131 (268)
-.|+|+|.+|+||||++..|... .. ..+ +. ...+..+. ...- .-..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLERLRD 428 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHHHhcc
Confidence 57889999999999999887542 10 000 00 00111111 0000 0124
Q ss_pred EEEEEEeCCCccccccc-hhh--hhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCcc
Q 041042 132 ISYSIWEVTGDAKAQDH-LPV--ACK--DSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPID 206 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~~-~~~--~~~--~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~ 206 (268)
+.+.|+||+|....... ... .+. .....++|++.+. ++..+...++.+.. ..+--+|.||.|.
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~---~~~~gvILTKlDE------- 496 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH---AKPQGVVLTKLDE------- 496 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh---hCCeEEEEecCcC-------
Confidence 67889999995432211 100 011 1234567777653 34444444443332 2333599999994
Q ss_pred chhchHHHHHHHHHHhCCeEEEEcCCCCcCH
Q 041042 207 LQWTIASQARAYAKALNATLFFSSATYNINV 237 (268)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 237 (268)
......+..+....+.++..++ +|++|
T Consensus 497 --t~~lG~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 497 --TGRFGSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred --ccchhHHHHHHHHhCCCEEEEe--CCCCc
Confidence 1123566677778888877764 45555
No 392
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.34 E-value=0.00029 Score=64.45 Aligned_cols=91 Identities=16% Similarity=0.147 Sum_probs=53.1
Q ss_pred EEEEEeCCCcccccc-c---hhhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCc
Q 041042 133 SYSIWEVTGDAKAQD-H---LPVA--CKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPI 205 (268)
Q Consensus 133 ~l~i~Dt~G~~~~~~-~---~~~~--~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~ 205 (268)
.+.++||+|...... + .... ...+|.+++|.|.+... +. ++.++.+.....+ -+|.||.|..
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~a---v~~a~~F~~~l~i~gvIlTKlD~~----- 245 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QA---KNQAKAFHEAVGIGGIIITKLDGT----- 245 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HH---HHHHHHHHhcCCCCEEEEecccCC-----
Confidence 688999999654321 1 1111 34678999999986642 22 2223333323334 4889999941
Q ss_pred cchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 206 DLQWTIASQARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
..--.+..++...+.|+.+++. |+.++++
T Consensus 246 ----a~~G~~ls~~~~~~~Pi~fig~--Ge~v~Dl 274 (437)
T PRK00771 246 ----AKGGGALSAVAETGAPIKFIGT--GEKIDDL 274 (437)
T ss_pred ----CcccHHHHHHHHHCcCEEEEec--CCCcccC
Confidence 1134466677788888777653 4444443
No 393
>PRK00098 GTPase RsgA; Reviewed
Probab=97.33 E-value=0.00045 Score=60.30 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDE 107 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~ 107 (268)
-.++++|.+|||||||+|.+.+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 368899999999999999998754
No 394
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.32 E-value=0.001 Score=42.58 Aligned_cols=44 Identities=20% Similarity=0.384 Sum_probs=30.5
Q ss_pred CCcEEEEEEeCCChhh--HHHHHHHHHHHHHhCCCCceEEEEeCCC
Q 041042 155 DSIAILFMFDLTSRCT--LKSVIRWYQQARKCNQTAIPIIIGTKFD 198 (268)
Q Consensus 155 ~a~~vilv~D~~~~~s--~~~~~~~~~~i~~~~~~~~~ilvgnK~D 198 (268)
-++++++++|++..+. .++-...+++++..-++.|.++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 3589999999998774 4555577888888877888899999998
No 395
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.28 E-value=0.0011 Score=48.01 Aligned_cols=82 Identities=12% Similarity=0.076 Sum_probs=50.8
Q ss_pred EEEEc-CCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 041042 86 ISLLG-DCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFD 164 (268)
Q Consensus 86 i~vlG-~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D 164 (268)
|++.| ..|+||||+...+...- .....++.-.+ .+.. +.+.++|+++... ......+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~-~~~~~~vl~~d-------~d~~-~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAAL-ARRGKRVLLID-------LDPQ-YDYIIIDTPPSLG--LLTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH-HhCCCcEEEEe-------CCCC-CCEEEEeCcCCCC--HHHHHHHHHCCEEEEecc
Confidence 45666 56899999877654321 11111211111 1211 5688999998643 233467788999999998
Q ss_pred CCChhhHHHHHHHHH
Q 041042 165 LTSRCTLKSVIRWYQ 179 (268)
Q Consensus 165 ~~~~~s~~~~~~~~~ 179 (268)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 74 667777776665
No 396
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.25 E-value=0.0056 Score=50.84 Aligned_cols=76 Identities=14% Similarity=0.098 Sum_probs=43.3
Q ss_pred EEEEeC-CCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchH
Q 041042 134 YSIWEV-TGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIA 212 (268)
Q Consensus 134 l~i~Dt-~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~ 212 (268)
+.+.|| +|.|.| .+...+++|.+|+|.|.+ ..|+....+.-+...+.. -..+.+|.||.|- . .
T Consensus 136 ~VivDtEAGiEHf---gRg~~~~vD~vivVvDpS-~~sl~taeri~~L~~elg-~k~i~~V~NKv~e-------~----e 199 (255)
T COG3640 136 VVIVDTEAGIEHF---GRGTIEGVDLVIVVVDPS-YKSLRTAERIKELAEELG-IKRIFVVLNKVDE-------E----E 199 (255)
T ss_pred EEEEecccchhhh---ccccccCCCEEEEEeCCc-HHHHHHHHHHHHHHHHhC-CceEEEEEeeccc-------h----h
Confidence 445555 343333 234457899999999987 455655544333333322 1334599999992 1 3
Q ss_pred HHHHHHHHHhCCe
Q 041042 213 SQARAYAKALNAT 225 (268)
Q Consensus 213 ~~~~~~~~~~~~~ 225 (268)
+....++...+.+
T Consensus 200 ~~~~~~~~~~~~~ 212 (255)
T COG3640 200 ELLRELAEELGLE 212 (255)
T ss_pred HHHHhhhhccCCe
Confidence 4455556555553
No 397
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.22 E-value=0.002 Score=50.16 Aligned_cols=58 Identities=10% Similarity=0.058 Sum_probs=36.1
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCC
Q 041042 131 RISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFD 198 (268)
Q Consensus 131 ~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~D 198 (268)
.+.+.+.||+|... .. ..++..||-+|+|...+-.+.+.-++- ..+ ...-+++.||.|
T Consensus 91 ~~D~iiIDtaG~~~--~~-~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~-----~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ--SE-VDIASMADTTVVVMAPGAGDDIQAIKA--GIM-----EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh--hh-hhHHHhCCEEEEEECCCchhHHHHhhh--hHh-----hhcCEEEEeCCC
Confidence 45688999998643 22 348889998998887653333322111 111 223489999998
No 398
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.22 E-value=0.002 Score=57.63 Aligned_cols=153 Identities=14% Similarity=0.122 Sum_probs=82.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcce---eeEE---------------EEEE--E----------CCeEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGL---NMMD---------------KTLL--V----------RGARI 132 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~---~~~~---------------~~~~--~----------~~~~~ 132 (268)
.=.|+++|+.||||||-+-.|...-........+|. |.+. ..+. . .-..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 346889999999999988776443221111111211 1110 0000 0 11345
Q ss_pred EEEEEeCCCccccccc----hhhhhcCC--cEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCc
Q 041042 133 SYSIWEVTGDAKAQDH----LPVACKDS--IAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPI 205 (268)
Q Consensus 133 ~l~i~Dt~G~~~~~~~----~~~~~~~a--~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~ 205 (268)
.+.+.||+|...+... ...|+... .-+.||++++.. .+.+...++.+ . ..++ =++.||.|-
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f---~-~~~i~~~I~TKlDE------ 350 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQF---S-LFPIDGLIFTKLDE------ 350 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHh---c-cCCcceeEEEcccc------
Confidence 6889999997665432 23333322 345566676542 23444444443 2 2222 399999993
Q ss_pred cchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH-H----HHHHHHHHhcCc
Q 041042 206 DLQWTIASQARAYAKALNATLFFSSATYNINVNK-I----LKFITAKLFDIP 252 (268)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~-~----f~~l~~~i~~~~ 252 (268)
....-.+-.++.+.+.|.-.++ +|++|.+ + -.++++.++.-.
T Consensus 351 ---T~s~G~~~s~~~e~~~PV~YvT--~GQ~VPeDI~va~~~~Lv~~~~g~~ 397 (407)
T COG1419 351 ---TTSLGNLFSLMYETRLPVSYVT--NGQRVPEDIVVANPDYLVRRILGTF 397 (407)
T ss_pred ---cCchhHHHHHHHHhCCCeEEEe--CCCCCCchhhhcChHHHHHHHhccc
Confidence 2235566677777777765553 5665542 2 345666666554
No 399
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.22 E-value=0.017 Score=52.13 Aligned_cols=156 Identities=12% Similarity=0.179 Sum_probs=91.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcC-----------------CCCCC----CCCCcceeeEE---EEEEE-CCeEEEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGD-----------------EKEQG----GSPGEGLNMMD---KTLLV-RGARISYSIW 137 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~-----------------~~~~~----~~~t~~~~~~~---~~~~~-~~~~~~l~i~ 137 (268)
.+=+-|+|+-.+||||||+||..- +..++ ..-|+..-|.. ..+.+ ++..+++.+.
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 477899999999999999999651 11111 11111222222 13334 5678889999
Q ss_pred eCCCc--------ccc--ccc----h---------------hhhhcC--CcEEEEEEeCC----ChhhHHHHH-HHHHHH
Q 041042 138 EVTGD--------AKA--QDH----L---------------PVACKD--SIAILFMFDLT----SRCTLKSVI-RWYQQA 181 (268)
Q Consensus 138 Dt~G~--------~~~--~~~----~---------------~~~~~~--a~~vilv~D~~----~~~s~~~~~-~~~~~i 181 (268)
|+-|- +.- ..+ | +..+++ .-++++--|.+ .+++|..+. +.++++
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 98771 110 000 0 011111 22555555543 245565554 566666
Q ss_pred HHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCC--CCcCHHHHHHHHHHH
Q 041042 182 RKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSAT--YNINVNKILKFITAK 247 (268)
Q Consensus 182 ~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~i~~~f~~l~~~ 247 (268)
+.. +.|.||+.|-.+ .......+-..++.++++++.+.+++. +.+.|..+++.++..
T Consensus 177 k~i--gKPFvillNs~~-------P~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLyE 235 (492)
T PF09547_consen 177 KEI--GKPFVILLNSTK-------PYSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLYE 235 (492)
T ss_pred HHh--CCCEEEEEeCCC-------CCCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHhc
Confidence 654 456788888887 233455777888899999999987764 445566666665543
No 400
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.20 E-value=0.00047 Score=62.90 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=40.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 143 (268)
.+-|-+||-|||||||+||.|++.+- .....|-|-+-+-.++.+.. .+-+.|++|.-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~Kk-VsVS~TPGkTKHFQTi~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKK-VSVSSTPGKTKHFQTIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCce-eeeecCCCCcceeEEEEcCC---CceecCCCCcc
Confidence 58899999999999999999999874 23344445544434444432 25689999953
No 401
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.16 E-value=0.007 Score=48.14 Aligned_cols=83 Identities=10% Similarity=-0.002 Sum_probs=52.5
Q ss_pred EEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhch
Q 041042 133 SYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTI 211 (268)
Q Consensus 133 ~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~ 211 (268)
.+.++|+++.... .....+..+|.+|++.+.+ ..++..+..+++.+... +... .+|.|+.|- .....
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~-------~~~~~ 131 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPE-ISSLRDADRVKGLLEAL--GIKVVGVIVNRVRP-------DMVEG 131 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHc--CCceEEEEEeCCcc-------cccch
Confidence 5889999975432 3445568899999999875 45566666666666653 2233 489999983 11112
Q ss_pred HHHHHHHHHHhCCeEE
Q 041042 212 ASQARAYAKALNATLF 227 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~ 227 (268)
.+..+.+.+.++.+++
T Consensus 132 ~~~~~~~~~~~~~~v~ 147 (179)
T cd02036 132 GDMVEDIEEILGVPLL 147 (179)
T ss_pred hhHHHHHHHHhCCCEE
Confidence 2224455666677654
No 402
>PRK10867 signal recognition particle protein; Provisional
Probab=97.16 E-value=0.0012 Score=60.32 Aligned_cols=91 Identities=13% Similarity=0.140 Sum_probs=50.7
Q ss_pred EEEEEEeCCCcccccc-ch---hhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCC
Q 041042 132 ISYSIWEVTGDAKAQD-HL---PVA--CKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLP 204 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~-~~---~~~--~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~ 204 (268)
+.+.|.||+|...... +. ..+ .-..+.+++|.|.+.. +++......+.. ...+ =+|.||.|-
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~---~~~i~giIlTKlD~----- 252 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNE---ALGLTGVILTKLDG----- 252 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHh---hCCCCEEEEeCccC-----
Confidence 5688999999543211 11 111 1256788999997643 223233333322 2223 388899993
Q ss_pred ccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 205 IDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
. ...-.+...+...++|+.+++. |+++++
T Consensus 253 -~---~rgG~alsi~~~~~~PI~fig~--Ge~v~D 281 (433)
T PRK10867 253 -D---ARGGAALSIRAVTGKPIKFIGT--GEKLDD 281 (433)
T ss_pred -c---ccccHHHHHHHHHCcCEEEEeC--CCcccc
Confidence 1 1123366777888888777654 444443
No 403
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.14 E-value=0.00085 Score=54.98 Aligned_cols=39 Identities=26% Similarity=0.133 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCeEEE--EcCCCCcCHHHHHHHHHHHHhcC
Q 041042 213 SQARAYAKALNATLFF--SSATYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~--~Sa~~~~~i~~~f~~l~~~i~~~ 251 (268)
..++.+|-+-.+-.|- |||++-+-+.|+++-+.+...+-
T Consensus 146 AIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG 186 (240)
T COG1126 146 AIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 186 (240)
T ss_pred HHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 3445555554554443 99999999999998887766543
No 404
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.0011 Score=59.03 Aligned_cols=132 Identities=14% Similarity=0.209 Sum_probs=88.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC--------CCCCCC--------CCCcceeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD--------EKEQGG--------SPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQD 147 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~--------~~~~~~--------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 147 (268)
-+|-++..-.+||||...|++.- ...... ...-|.+..+..+.++=+..+++++||+|+-.|+-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 35777888899999999987531 111110 01124555555666666777899999999999999
Q ss_pred chhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeE
Q 041042 148 HLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATL 226 (268)
Q Consensus 148 ~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (268)
....+++--|+++.|||.+-.-.-+.+..|.+.= .-.+| +...||.|. + -..-+..+...-++.++.-
T Consensus 118 everclrvldgavav~dasagve~qtltvwrqad----k~~ip~~~finkmdk---~----~anfe~avdsi~ekl~ak~ 186 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD----KFKIPAHCFINKMDK---L----AANFENAVDSIEEKLGAKA 186 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCcccceeeeehhcc----ccCCchhhhhhhhhh---h----hhhhhhHHHHHHHHhCCce
Confidence 9999999999999999988655555566676532 22344 788999994 1 1112344555556666553
No 405
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.12 E-value=0.0012 Score=60.23 Aligned_cols=92 Identities=12% Similarity=0.149 Sum_probs=53.2
Q ss_pred EEEEEEeCCCcccccc-chh---hh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCC
Q 041042 132 ISYSIWEVTGDAKAQD-HLP---VA--CKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLP 204 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~-~~~---~~--~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~ 204 (268)
+.+.|.||+|...... +.. .+ .-..+.+++|.|.+.. +++..+...+.. ...+ =+|.||.|-
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~---~v~i~giIlTKlD~----- 251 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNE---RLGLTGVVLTKLDG----- 251 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHh---hCCCCEEEEeCccC-----
Confidence 4688999999543211 111 11 2357889999998643 233333333332 2233 388999993
Q ss_pred ccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 205 IDLQWTIASQARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
. ...-.+...+...++|+.+++. |+.++++
T Consensus 252 -~---~~~G~~lsi~~~~~~PI~fi~~--Ge~i~dl 281 (428)
T TIGR00959 252 -D---ARGGAALSVRSVTGKPIKFIGV--GEKIDDL 281 (428)
T ss_pred -c---ccccHHHHHHHHHCcCEEEEeC--CCChhhC
Confidence 1 1123377778888888877654 4555543
No 406
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.07 E-value=0.0027 Score=61.67 Aligned_cols=104 Identities=15% Similarity=0.162 Sum_probs=58.2
Q ss_pred EEEEEEeCCCccccc-cc---hhhh--hcCCcEEEEEEeCCC-hhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCC
Q 041042 132 ISYSIWEVTGDAKAQ-DH---LPVA--CKDSIAILFMFDLTS-RCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQL 203 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~-~~---~~~~--~~~a~~vilv~D~~~-~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~ 203 (268)
..+.|+||+|..... .+ .... ....+-+++|.|.+. .+.+.++.+.+. ... ...+ =+|.||.|-.
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~---~~~-~~~i~glIlTKLDEt--- 336 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYR---HGA-GEDVDGCIITKLDEA--- 336 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHh---hcc-cCCCCEEEEeccCCC---
Confidence 458899999943221 11 1111 123456789999874 334443332222 111 1123 3899999931
Q ss_pred CccchhchHHHHHHHHHHhCCeEEEEcCCCCcCH-HHH----HHHHHHHHhc
Q 041042 204 PIDLQWTIASQARAYAKALNATLFFSSATYNINV-NKI----LKFITAKLFD 250 (268)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~~----f~~l~~~i~~ 250 (268)
...-.+..+....++|+..++ +|++| +++ -+.+++.++.
T Consensus 337 ------~~~G~iL~i~~~~~lPI~yit--~GQ~VPdDL~~a~~~~lv~~ll~ 380 (767)
T PRK14723 337 ------THLGPALDTVIRHRLPVHYVS--TGQKVPEHLELAQADELVDRAFA 380 (767)
T ss_pred ------CCccHHHHHHHHHCCCeEEEe--cCCCChhhcccCCHHHHHHHHhc
Confidence 123456677888888887764 57777 454 2345666665
No 407
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.0028 Score=64.07 Aligned_cols=108 Identities=16% Similarity=0.116 Sum_probs=58.5
Q ss_pred EEEEcCCCChHHHHHHHHhcCCCCC--CC----CCCcceeeEEEEEEECCeEEEEEEEeCCCcc--------ccccchhh
Q 041042 86 ISLLGDCHIGKTSFLEKYVGDEKEQ--GG----SPGEGLNMMDKTLLVRGARISYSIWEVTGDA--------KAQDHLPV 151 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~~~~~--~~----~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~--------~~~~~~~~ 151 (268)
.+|||.+|+||||++..- +..|.- .. ....|...+ .--+. -.-.++||+|.. .....|..
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~c--dwwf~---deaVlIDtaGry~~q~s~~~~~~~~W~~ 201 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNC--DWWFT---DEAVLIDTAGRYITQDSADEVDRAEWLG 201 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCccc--Ccccc---cceEEEcCCcceecccCcchhhHHHHHH
Confidence 679999999999998642 322211 10 111110011 11111 124578999832 12233443
Q ss_pred h---------hcCCcEEEEEEeCCChhhH---------HHHHHHHHHHHHhCCCCce-EEEEeCCCC
Q 041042 152 A---------CKDSIAILFMFDLTSRCTL---------KSVIRWYQQARKCNQTAIP-IIIGTKFDD 199 (268)
Q Consensus 152 ~---------~~~a~~vilv~D~~~~~s~---------~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl 199 (268)
+ .+..|+||+..|+.+.-+- ..++.=++++...-.-.+| .|+.||.|+
T Consensus 202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dl 268 (1188)
T COG3523 202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADL 268 (1188)
T ss_pred HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccc
Confidence 3 3467999999998653221 1122334455554444445 599999998
No 408
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=97.01 E-value=0.00067 Score=55.97 Aligned_cols=123 Identities=15% Similarity=0.197 Sum_probs=69.2
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChh----------hHHHHHHHHHHHHHh--CCCCceEEEEeCC
Q 041042 130 ARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRC----------TLKSVIRWYQQARKC--NQTAIPIIIGTKF 197 (268)
Q Consensus 130 ~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~----------s~~~~~~~~~~i~~~--~~~~~~ilvgnK~ 197 (268)
+++.+.+.|.+||..-+.-|-+++++.-.++++..++..+ ..++-......+..+ -.+..+|+..||.
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence 4456778888888777777777777766666655443221 112212222222222 2466778999999
Q ss_pred CCCC-C---------CCcc-chhchHHHHHHHHHHh----C-----C-eEEEEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 198 DDFI-Q---------LPID-LQWTIASQARAYAKAL----N-----A-TLFFSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 198 Dl~~-~---------~~~~-~~~~~~~~~~~~~~~~----~-----~-~~~~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
||.+ + .|+- ......+.+++|.-+. + + --..+.|..-+||.-+|..+-..+++..
T Consensus 277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence 9731 1 1110 0111123334443222 2 1 1244888888999999999888887654
No 409
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.0034 Score=56.45 Aligned_cols=139 Identities=18% Similarity=0.250 Sum_probs=74.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC----CC-----CCC-CC-----------CCcceeeEEEE----E--EE---C-CeEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD----EK-----EQG-GS-----------PGEGLNMMDKT----L--LV---R-GARI 132 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~----~~-----~~~-~~-----------~t~~~~~~~~~----~--~~---~-~~~~ 132 (268)
.+|+++|.+||||||++..+... .. ..+ +. ...+..+.... + .+ . ...+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~ 321 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 321 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCC
Confidence 57999999999999999998531 00 000 00 00111111000 0 00 0 0135
Q ss_pred EEEEEeCCCccccccc----hhhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCc
Q 041042 133 SYSIWEVTGDAKAQDH----LPVAC--KDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPI 205 (268)
Q Consensus 133 ~l~i~Dt~G~~~~~~~----~~~~~--~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~ 205 (268)
.+.|.||+|....... ...++ ...+.++||.|++-.. +.+..+++.+ .. ..+ =+|.||.|-.
T Consensus 322 DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F---~~-~~idglI~TKLDET----- 390 (436)
T PRK11889 322 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNF---KD-IHIDGIVFTKFDET----- 390 (436)
T ss_pred CEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHh---cC-CCCCEEEEEcccCC-----
Confidence 6889999996442211 12222 2356788998875322 2333333333 32 223 4999999941
Q ss_pred cchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 206 DLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
...-.+..++...++|+..++ +|++|.+
T Consensus 391 ----~k~G~iLni~~~~~lPIsyit--~GQ~VPe 418 (436)
T PRK11889 391 ----ASSGELLKIPAVSSAPIVLMT--DGQDVKK 418 (436)
T ss_pred ----CCccHHHHHHHHHCcCEEEEe--CCCCCCc
Confidence 123456677888888877764 4555443
No 410
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.98 E-value=0.00075 Score=53.79 Aligned_cols=133 Identities=19% Similarity=0.230 Sum_probs=64.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeC-CCccc-------------------
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEV-TGDAK------------------- 144 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt-~G~~~------------------- 144 (268)
||++.|.+|+|||||+++++..-- ....+.- -|.+..+.-++..+-+.+.|. .|.+.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~-~~~~~v~--Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELK-KKGLPVG--GFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHH-HTCGGEE--EEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhh-ccCCccc--eEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 689999999999999999865321 0111111 244455555666666666666 33211
Q ss_pred ---ccc----chhhhhcCCcEEEEEEeC-CChhhHHHHHHHHHHHHHh-CCCCceEEEEeCC-CCCCCCCccchhchHHH
Q 041042 145 ---AQD----HLPVACKDSIAILFMFDL-TSRCTLKSVIRWYQQARKC-NQTAIPIIIGTKF-DDFIQLPIDLQWTIASQ 214 (268)
Q Consensus 145 ---~~~----~~~~~~~~a~~vilv~D~-~~~~s~~~~~~~~~~i~~~-~~~~~~ilvgnK~-Dl~~~~~~~~~~~~~~~ 214 (268)
|.. .....+..++ ++|+|= .-.+-+ ...|.+.+... .++.+.|.+..+. +. .-
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~--~~~F~~~v~~~l~s~~~vi~vv~~~~~~-------------~~ 140 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMELK--SPGFREAVEKLLDSNKPVIGVVHKRSDN-------------PF 140 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCCC---CHHHHHHHHHHCTTSEEEEE--SS--S-------------CC
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhhc--CHHHHHHHHHHHcCCCcEEEEEecCCCc-------------HH
Confidence 111 1111123445 677772 111110 11334444333 2334445555555 41 22
Q ss_pred HHHHHHHhCCeEEEEcCCCCcCH
Q 041042 215 ARAYAKALNATLFFSSATYNINV 237 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~Sa~~~~~i 237 (268)
++++.+..++.+++++..+.+.+
T Consensus 141 l~~i~~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 141 LEEIKRRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp HHHHHTTTTSEEEE--TTTCCCH
T ss_pred HHHHHhCCCcEEEEeChhHHhhH
Confidence 56677777899999877766544
No 411
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.98 E-value=0.0041 Score=57.53 Aligned_cols=102 Identities=18% Similarity=0.179 Sum_probs=56.3
Q ss_pred EEEEEeCCCcccccc-c--hhhhhcC---CcEEEEEEeCCC-hhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCc
Q 041042 133 SYSIWEVTGDAKAQD-H--LPVACKD---SIAILFMFDLTS-RCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPI 205 (268)
Q Consensus 133 ~l~i~Dt~G~~~~~~-~--~~~~~~~---a~~vilv~D~~~-~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~ 205 (268)
.+.++||+|...... + ....+.. ..-.++|.|.+- ...+.++ +..+....+--+|.||.|-
T Consensus 336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i------~~~f~~~~~~g~IlTKlDe------ 403 (484)
T PRK06995 336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEV------VQAYRGPGLAGCILTKLDE------ 403 (484)
T ss_pred CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHH------HHHhccCCCCEEEEeCCCC------
Confidence 577999999433221 1 1111111 123678888763 3333222 2223322223488899993
Q ss_pred cchhchHHHHHHHHHHhCCeEEEEcCCCCcCH-HHH----HHHHHHHHhcC
Q 041042 206 DLQWTIASQARAYAKALNATLFFSSATYNINV-NKI----LKFITAKLFDI 251 (268)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~~----f~~l~~~i~~~ 251 (268)
....-.+..++...++++.+++ +|++| +++ -+.+++.++..
T Consensus 404 ---t~~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~a~~~~lv~~ll~~ 449 (484)
T PRK06995 404 ---AASLGGALDVVIRYKLPLHYVS--NGQRVPEDLHLANKKFLLHRAFCA 449 (484)
T ss_pred ---cccchHHHHHHHHHCCCeEEEe--cCCCChhhhccCCHHHHHHHHhcC
Confidence 1224556778888898887764 67777 554 23466666654
No 412
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.97 E-value=0.0049 Score=56.12 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=79.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCc-----------------------ceeeEEEEEE-------ECCeEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGE-----------------------GLNMMDKTLL-------VRGARIS 133 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~-----------------------~~~~~~~~~~-------~~~~~~~ 133 (268)
-+++++|..||||||++..+.+..........+ |+.+....-. ..-....
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~d 271 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKH 271 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCCC
Confidence 489999999999999999776421000000000 1111000000 0012235
Q ss_pred EEEEeCCCcccccc----chhhhh--cCCcEEEEEEeCCC-hhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCc
Q 041042 134 YSIWEVTGDAKAQD----HLPVAC--KDSIAILFMFDLTS-RCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPI 205 (268)
Q Consensus 134 l~i~Dt~G~~~~~~----~~~~~~--~~a~~vilv~D~~~-~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~ 205 (268)
+.+.||+|...... ....+. ....-.+||.|.+- .+.+. .++.. +. ...+ =+|.||.|-.
T Consensus 272 ~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~---~~~~~---f~-~~~~~~~I~TKlDEt----- 339 (420)
T PRK14721 272 MVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD---EVISA---YQ-GHGIHGCIITKVDEA----- 339 (420)
T ss_pred EEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH---HHHHH---hc-CCCCCEEEEEeeeCC-----
Confidence 77999999554221 122222 12346788888873 33333 32222 22 2223 3999999941
Q ss_pred cchhchHHHHHHHHHHhCCeEEEEcCCCCcCH-HHH----HHHHHHHHhc
Q 041042 206 DLQWTIASQARAYAKALNATLFFSSATYNINV-NKI----LKFITAKLFD 250 (268)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~~----f~~l~~~i~~ 250 (268)
...-.+..++...+.++..++ +|++| +++ -+.+++.++.
T Consensus 340 ----~~~G~~l~~~~~~~lPi~yvt--~Gq~VP~Dl~~a~~~~lv~~ll~ 383 (420)
T PRK14721 340 ----ASLGIALDAVIRRKLVLHYVT--NGQKVPEDLHEANSRYLLHRIFK 383 (420)
T ss_pred ----CCccHHHHHHHHhCCCEEEEE--CCCCchhhhhhCCHHHHHHHHhc
Confidence 224556777888888887764 56666 333 2345666665
No 413
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.0049 Score=57.52 Aligned_cols=112 Identities=13% Similarity=0.159 Sum_probs=68.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCC-----CCCCC-CCC----------cceeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDE-----KEQGG-SPG----------EGLNMMDKTLLVRGARISYSIWEVTGDAKAQDH 148 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~-----~~~~~-~~t----------~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 148 (268)
.|-+.-.--+||||+-.+.+... +.+.. ..+ -|.+..+-.....-.+..++++||||+-.|.-.
T Consensus 41 NIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~E 120 (721)
T KOG0465|consen 41 NIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFE 120 (721)
T ss_pred ccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEE
Confidence 45556666899999999875421 10000 000 122222222222223678999999999999888
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCC
Q 041042 149 LPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDD 199 (268)
Q Consensus 149 ~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl 199 (268)
....++--|++++|.|....-.-+....|.+. +++ +.|-|...||.|-
T Consensus 121 VeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~-~ry--~vP~i~FiNKmDR 168 (721)
T KOG0465|consen 121 VERALRVLDGAVLVLDAVAGVESQTETVWRQM-KRY--NVPRICFINKMDR 168 (721)
T ss_pred ehhhhhhccCeEEEEEcccceehhhHHHHHHH-Hhc--CCCeEEEEehhhh
Confidence 88888999999999987554333444555543 333 3455777888883
No 414
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.96 E-value=0.0026 Score=53.45 Aligned_cols=89 Identities=16% Similarity=0.285 Sum_probs=55.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccc----c---chhhhhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKE-QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQ----D---HLPVACKD 155 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~---~~~~~~~~ 155 (268)
-||-++|.|.||||||+..+.+..-. ..|.-|. .......+.+.+ -++++.|.+|.-+-. . ..-...+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyeftt-l~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTT-LTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCcccccccee-EEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeec
Confidence 58999999999999999998775421 2222211 111112222333 458899999843211 1 11223578
Q ss_pred CcEEEEEEeCCChhhHHHHH
Q 041042 156 SIAILFMFDLTSRCTLKSVI 175 (268)
Q Consensus 156 a~~vilv~D~~~~~s~~~~~ 175 (268)
|+.+++|.|+-.+-+...+.
T Consensus 137 cnli~~vld~~kp~~hk~~i 156 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLSHKKII 156 (358)
T ss_pred ccEEEEEeeccCcccHHHHH
Confidence 99999999998887765554
No 415
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.94 E-value=0.0039 Score=55.78 Aligned_cols=92 Identities=14% Similarity=0.156 Sum_probs=51.3
Q ss_pred EEEEEEeCCCcccccc----chhhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCc
Q 041042 132 ISYSIWEVTGDAKAQD----HLPVACK--DSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPI 205 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~----~~~~~~~--~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~ 205 (268)
+.+.+.||+|...... ....+.. ..+.+++|.+.+ ....++...++ .+..-.+--+|.||.|-.
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~---~f~~l~i~glI~TKLDET----- 355 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILP---KLAEIPIDGFIITKMDET----- 355 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHH---hcCcCCCCEEEEEcccCC-----
Confidence 5788999999744321 1122222 335666777653 22333333322 232222225999999941
Q ss_pred cchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 206 DLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
...-.+..++...+.|+..+| +|++|.+
T Consensus 356 ----~~~G~~Lsv~~~tglPIsylt--~GQ~Vpd 383 (407)
T PRK12726 356 ----TRIGDLYTVMQETNLPVLYMT--DGQNITE 383 (407)
T ss_pred ----CCccHHHHHHHHHCCCEEEEe--cCCCCCc
Confidence 224556777888888877765 4555553
No 416
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.91 E-value=0.041 Score=48.46 Aligned_cols=97 Identities=14% Similarity=0.076 Sum_probs=51.8
Q ss_pred EEEEEeCCCccccccchhhhhc--------CCcEEEEEEeCCChhhHHH-HHH-HHHHHHHhCCCCceEEEEeCCCCCCC
Q 041042 133 SYSIWEVTGDAKAQDHLPVACK--------DSIAILFMFDLTSRCTLKS-VIR-WYQQARKCNQTAIPIIIGTKFDDFIQ 202 (268)
Q Consensus 133 ~l~i~Dt~G~~~~~~~~~~~~~--------~a~~vilv~D~~~~~s~~~-~~~-~~~~i~~~~~~~~~ilvgnK~Dl~~~ 202 (268)
...++.|.|-..-..+...+.. .-|++|-|+|+.+-..... +.. ...++. ..-+||.||.||
T Consensus 86 D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia-----~AD~ivlNK~Dl--- 157 (323)
T COG0523 86 DRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA-----FADVIVLNKTDL--- 157 (323)
T ss_pred CEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH-----hCcEEEEecccC---
Confidence 3456777775443333333322 3478999999876543222 222 222221 123899999998
Q ss_pred CCccchhchHHHHHHHHHHh--CCeEEEEcCCCCcCHHHHHH
Q 041042 203 LPIDLQWTIASQARAYAKAL--NATLFFSSATYNINVNKILK 242 (268)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~f~ 242 (268)
..++ ..+..+...+.. .++++.+|. .+....+++.
T Consensus 158 v~~~----~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 158 VDAE----ELEALEARLRKLNPRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred CCHH----HHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence 3322 134445555555 367788776 3334444443
No 417
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=96.86 E-value=0.015 Score=53.82 Aligned_cols=65 Identities=14% Similarity=0.036 Sum_probs=41.2
Q ss_pred EEEEEeCCCcc-------------ccccchhhhhcCCcEEEEEEeCCChhh-HHHHHHHHHHHHHhCCCCc-eEEEEeCC
Q 041042 133 SYSIWEVTGDA-------------KAQDHLPVACKDSIAILFMFDLTSRCT-LKSVIRWYQQARKCNQTAI-PIIIGTKF 197 (268)
Q Consensus 133 ~l~i~Dt~G~~-------------~~~~~~~~~~~~a~~vilv~D~~~~~s-~~~~~~~~~~i~~~~~~~~-~ilvgnK~ 197 (268)
++.+.|.+|-- ....+...|+.+.+++|+|+--.+.+. -.++.... ....|... -|+|.+|.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLV---sq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLV---SQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHH---HhcCCCCCeeEEEEeec
Confidence 46688988821 234577889999999999985333332 22333333 33344333 38999999
Q ss_pred CCC
Q 041042 198 DDF 200 (268)
Q Consensus 198 Dl~ 200 (268)
||.
T Consensus 490 DlA 492 (980)
T KOG0447|consen 490 DLA 492 (980)
T ss_pred chh
Confidence 984
No 418
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.84 E-value=0.0057 Score=46.21 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDE 107 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~ 107 (268)
--+++.|++|+|||+|++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999987654
No 419
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.79 E-value=0.012 Score=47.23 Aligned_cols=86 Identities=16% Similarity=0.143 Sum_probs=47.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEe--CC-CccccccchhhhhcCCcEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWE--VT-GDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D--t~-G~~~~~~~~~~~~~~a~~vi 160 (268)
=.++++|..|+|||||++.+.+-.. ++-| .+.+++..+.+..-+ .+ |+.+--.+....+.+.+.++
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G------~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lll 94 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI-----PNGD------NDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC-----CCCc------EEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3789999999999999999877532 2222 122333332221111 22 33333345555666666544
Q ss_pred EEEe----CCChhhHHHHHHHHHHHH
Q 041042 161 FMFD----LTSRCTLKSVIRWYQQAR 182 (268)
Q Consensus 161 lv~D----~~~~~s~~~~~~~~~~i~ 182 (268)
+ | .-|..+-+.+..++.++.
T Consensus 95 L--DEPts~LD~~~~~~l~~~l~~~~ 118 (177)
T cd03222 95 F--DEPSAYLDIEQRLNAARAIRRLS 118 (177)
T ss_pred E--ECCcccCCHHHHHHHHHHHHHHH
Confidence 4 4 234455556666666554
No 420
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.76 E-value=0.0058 Score=44.70 Aligned_cols=101 Identities=9% Similarity=0.091 Sum_probs=59.1
Q ss_pred EEEc-CCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeC
Q 041042 87 SLLG-DCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDL 165 (268)
Q Consensus 87 ~vlG-~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~ 165 (268)
+++| ..|+||||+...+...--......+.-.|... ... ..+.+.|+++... ......+..+|.++++.+.
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~-----~~~-~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~ 74 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDL-----QFG-DDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQ 74 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCC-----CCC-CCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecC
Confidence 3444 57899999877664321101011211111111 011 1588999998643 3344567889999999876
Q ss_pred CChhhHHHHHHHHHHHHHhCCC--CceEEEEeC
Q 041042 166 TSRCTLKSVIRWYQQARKCNQT--AIPIIIGTK 196 (268)
Q Consensus 166 ~~~~s~~~~~~~~~~i~~~~~~--~~~ilvgnK 196 (268)
+ ..++..+..+++.+++.... ....+|.|+
T Consensus 75 ~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 75 D-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred C-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4 66777777777777765433 233477775
No 421
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.71 E-value=0.033 Score=49.06 Aligned_cols=95 Identities=15% Similarity=0.046 Sum_probs=48.8
Q ss_pred EEEEEEeCCCccccccchhhhhc--------CCcEEEEEEeCCChhhHH-HHHHHHHHHHHhCCCCceEEEEeCCCCCCC
Q 041042 132 ISYSIWEVTGDAKAQDHLPVACK--------DSIAILFMFDLTSRCTLK-SVIRWYQQARKCNQTAIPIIIGTKFDDFIQ 202 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~~~~~~~~--------~a~~vilv~D~~~~~s~~-~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~ 202 (268)
....+.+|.|......+...++. ..+++|.|+|+.+..... .......++. ..-+||.||+|+
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~-----~AD~IvlnK~Dl--- 162 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG-----YADRILLTKTDV--- 162 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH-----hCCEEEEecccc---
Confidence 34567778886554444444322 237899999986533211 1111122222 123899999997
Q ss_pred CCccchhchHHHHHHHHHHh--CCeEEEEcCCCCcCHHHHH
Q 041042 203 LPIDLQWTIASQARAYAKAL--NATLFFSSATYNINVNKIL 241 (268)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~f 241 (268)
.++ .+.+.+..+.. .+++++++ ........+|
T Consensus 163 ~~~------~~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~ 196 (318)
T PRK11537 163 AGE------AEKLRERLARINARAPVYTVV-HGDIDLSLLF 196 (318)
T ss_pred CCH------HHHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence 222 13445555544 35566544 2223344444
No 422
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.68 E-value=0.0015 Score=48.61 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
+|+|.|.+||||||+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998664
No 423
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=96.67 E-value=0.0066 Score=54.09 Aligned_cols=162 Identities=10% Similarity=0.062 Sum_probs=91.1
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCC------------------CCCC-----CCCCc------ceeeEEEEEEECCeE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDE------------------KEQG-----GSPGE------GLNMMDKTLLVRGAR 131 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~------------------~~~~-----~~~t~------~~~~~~~~~~~~~~~ 131 (268)
...++++++|.--+||||+-..+.... -.+. +..|. |.+.......+....
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 446899999999999999866553210 0000 00010 111111111122334
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChh---hHHHHHHHHHHHH--HhCCCCceEEEEeCCCCCC-CCCc
Q 041042 132 ISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRC---TLKSVIRWYQQAR--KCNQTAIPIIIGTKFDDFI-QLPI 205 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~---s~~~~~~~~~~i~--~~~~~~~~ilvgnK~Dl~~-~~~~ 205 (268)
-++.+.|.+|+..|-.-.-.-..+||..++|.++-..+ .|+.=-+..+... +-..-.-.|++.||.|-+. +.+.
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~ 236 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 236 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch
Confidence 56889999999887543333345788888888763211 2332212222221 1122233478999999642 2333
Q ss_pred cchhchHHHHHHHHHHhC------CeEEEEcCCCCcCHHHHHH
Q 041042 206 DLQWTIASQARAYAKALN------ATLFFSSATYNINVNKILK 242 (268)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~f~ 242 (268)
++-....+.+..|.+..| ..|+.+|..+|.++.+.-.
T Consensus 237 eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 237 ERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred hhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 333444667777777555 3589999999999987653
No 424
>PRK08118 topology modulation protein; Reviewed
Probab=96.63 E-value=0.0016 Score=51.91 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-||+|+|.+|+|||||.+.+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999988654
No 425
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.63 E-value=0.0059 Score=55.43 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcC
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
..+|+|+|.+|+|||||++.|...
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998754
No 426
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.62 E-value=0.015 Score=53.26 Aligned_cols=103 Identities=12% Similarity=0.154 Sum_probs=57.9
Q ss_pred EEEEEEeCCCccccc----cchhhhhc---CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCC
Q 041042 132 ISYSIWEVTGDAKAQ----DHLPVACK---DSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQL 203 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~----~~~~~~~~---~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~ 203 (268)
+.+.++||+|..... .....++. ...-+++|.+.+-.. ..+...+..+ . ...+ =+|.||.|-
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f---~-~~~~~~vI~TKlDe---- 369 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHF---S-RLPLDGLIFTKLDE---- 369 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHh---C-CCCCCEEEEecccc----
Confidence 568899999965432 12223333 234667788875321 2233322222 2 2223 499999993
Q ss_pred CccchhchHHHHHHHHHHhCCeEEEEcCCCCcCH-HHH----HHHHHHHHhcC
Q 041042 204 PIDLQWTIASQARAYAKALNATLFFSSATYNINV-NKI----LKFITAKLFDI 251 (268)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~~----f~~l~~~i~~~ 251 (268)
......+..++...+.++..++ +|++| +++ -+.+++.++..
T Consensus 370 -----t~~~G~i~~~~~~~~lPv~yit--~Gq~VpdDl~~a~~~~l~~~ll~~ 415 (424)
T PRK05703 370 -----TSSLGSILSLLIESGLPISYLT--NGQRVPDDIKVANPEELVRLLLGG 415 (424)
T ss_pred -----cccccHHHHHHHHHCCCEEEEe--CCCCChhhhhhCCHHHHHHHHhcc
Confidence 2224467788888899887765 56665 333 23455555544
No 427
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.62 E-value=0.0041 Score=53.61 Aligned_cols=58 Identities=14% Similarity=0.252 Sum_probs=36.2
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCC------CCCCCCCcceeeEEEE-EEECCeEEEEEEEeCCCc
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEK------EQGGSPGEGLNMMDKT-LLVRGARISYSIWEVTGD 142 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~------~~~~~~t~~~~~~~~~-~~~~~~~~~l~i~Dt~G~ 142 (268)
.++.+.|+|-||||||||+|.+..... .....| |++..... +.+.... .+.+.||+|.
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~p--GVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEP--GVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCC--CceeeehhheEeccCC-ceEEecCCCc
Confidence 468999999999999999998754321 222333 33332222 3332222 2668999993
No 428
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=96.62 E-value=0.0056 Score=55.98 Aligned_cols=111 Identities=14% Similarity=0.249 Sum_probs=71.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC------------CCCCCCC--CCcceeeEEEEEEE----------------CCeEEEE
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD------------EKEQGGS--PGEGLNMMDKTLLV----------------RGARISY 134 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~------------~~~~~~~--~t~~~~~~~~~~~~----------------~~~~~~l 134 (268)
++.++..-.-|||||...|+.. .|..... ..-|.+..+..+.. ++..+.+
T Consensus 21 NmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLi 100 (842)
T KOG0469|consen 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLI 100 (842)
T ss_pred cceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeE
Confidence 5667777788999999888642 1211110 01122222222221 4567889
Q ss_pred EEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCC
Q 041042 135 SIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFD 198 (268)
Q Consensus 135 ~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~D 198 (268)
+++|.+|+-.|.+.....++-.|+.++|+|.-+.---+.-....+.+ .....|+++.||.|
T Consensus 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~---~ERIkPvlv~NK~D 161 (842)
T KOG0469|consen 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAI---AERIKPVLVMNKMD 161 (842)
T ss_pred EeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHH---HhhccceEEeehhh
Confidence 99999999999999999999999999999976532111111112222 23567899999999
No 429
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.59 E-value=0.011 Score=53.68 Aligned_cols=132 Identities=14% Similarity=0.159 Sum_probs=69.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCC-CC---------CC------------CCCCcceeeEEEE-E-----EECCeEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDE-KE---------QG------------GSPGEGLNMMDKT-L-----LVRGARISYS 135 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~-~~---------~~------------~~~t~~~~~~~~~-~-----~~~~~~~~l~ 135 (268)
.-++++|.+||||||++.+|...- .. .+ +....+..+.... . .+....+.+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 468899999999999999886421 00 00 0001122221100 0 0011244678
Q ss_pred EEeCCCccccc-c---chhhhhc-----CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCc
Q 041042 136 IWEVTGDAKAQ-D---HLPVACK-----DSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPI 205 (268)
Q Consensus 136 i~Dt~G~~~~~-~---~~~~~~~-----~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~ 205 (268)
++||+|..... . ....+++ ...-.+||.|++-.. +.+...+ ..+. ...+ =+|.||.|-.
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~---~~f~-~~~~~glIlTKLDEt----- 372 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVL---KAYE-SLNYRRILLTKLDEA----- 372 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHH---HHhc-CCCCCEEEEEcccCC-----
Confidence 99999964321 1 1122222 234678899976543 2222222 2222 2223 4999999931
Q ss_pred cchhchHHHHHHHHHHhCCeEEEEc
Q 041042 206 DLQWTIASQARAYAKALNATLFFSS 230 (268)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~S 230 (268)
...-.+..++...+.|+..++
T Consensus 373 ----~~~G~il~i~~~~~lPI~ylt 393 (432)
T PRK12724 373 ----DFLGSFLELADTYSKSFTYLS 393 (432)
T ss_pred ----CCccHHHHHHHHHCCCEEEEe
Confidence 123446677778888876664
No 430
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.53 E-value=0.015 Score=40.84 Aligned_cols=76 Identities=14% Similarity=0.188 Sum_probs=46.6
Q ss_pred EEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccc-hhhhhcCCcEEEEEEe
Q 041042 86 ISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDH-LPVACKDSIAILFMFD 164 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~a~~vilv~D 164 (268)
+++.|.+|+|||++...+...--.. |. +...++ .+.+.|+++....... .......+|.++++.+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~------g~----~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR------GK----RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC------CC----eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 6788999999999988775431110 11 112223 5789999986542221 1455678899999998
Q ss_pred CCChhhHHHHHH
Q 041042 165 LTSRCTLKSVIR 176 (268)
Q Consensus 165 ~~~~~s~~~~~~ 176 (268)
... .+......
T Consensus 68 ~~~-~~~~~~~~ 78 (99)
T cd01983 68 PEA-LAVLGARR 78 (99)
T ss_pred Cch-hhHHHHHH
Confidence 753 33444433
No 431
>PRK07261 topology modulation protein; Provisional
Probab=96.53 E-value=0.002 Score=51.41 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
||+|+|.+|+|||||.+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
No 432
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.52 E-value=0.069 Score=47.53 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=18.5
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 041042 86 ISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~ 106 (268)
.+|.|.-|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 568899999999999999754
No 433
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.52 E-value=0.0019 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=17.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999754
No 434
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.51 E-value=0.0021 Score=51.72 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.||+|+|.||+||||+..++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999776
No 435
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.48 E-value=0.03 Score=50.58 Aligned_cols=106 Identities=10% Similarity=0.081 Sum_probs=58.8
Q ss_pred EEEEEEEeCCCcccccc----chhhhhcCC--c-EEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCC
Q 041042 131 RISYSIWEVTGDAKAQD----HLPVACKDS--I-AILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQL 203 (268)
Q Consensus 131 ~~~l~i~Dt~G~~~~~~----~~~~~~~~a--~-~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~ 203 (268)
.+.+.+.||+|...... -...++... + -++||.|++.. ...+...+ .++..-.+-=+|.||.|-
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~---~~~~~~~~~~~I~TKlDe---- 324 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIF---HQFSPFSYKTVIFTKLDE---- 324 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHH---HHhcCCCCCEEEEEeccC----
Confidence 45688999999654321 112233322 3 57899998764 23333333 333222222499999993
Q ss_pred CccchhchHHHHHHHHHHhCCeEEEEcCCCCcCH-HHHH----HHHHHHHhcCc
Q 041042 204 PIDLQWTIASQARAYAKALNATLFFSSATYNINV-NKIL----KFITAKLFDIP 252 (268)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~~f----~~l~~~i~~~~ 252 (268)
....-.+..++...+.|+..++ +|++| +++- ..+++.++.-.
T Consensus 325 -----t~~~G~~l~~~~~~~~Pi~yit--~Gq~vPeDl~~~~~~~~~~~l~g~~ 371 (388)
T PRK12723 325 -----TTCVGNLISLIYEMRKEVSYVT--DGQIVPHNISIAEPLTFIKKINGYR 371 (388)
T ss_pred -----CCcchHHHHHHHHHCCCEEEEe--CCCCChhhhhhCCHHHHHHHhcCCC
Confidence 1223456677788888876664 56666 4442 23455554443
No 436
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.46 E-value=0.0023 Score=49.07 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=18.4
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 041042 86 ISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~ 105 (268)
|+++|.+|+|||||++++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999864
No 437
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.43 E-value=0.03 Score=44.77 Aligned_cols=86 Identities=14% Similarity=0.045 Sum_probs=59.8
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchh
Q 041042 130 ARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQW 209 (268)
Q Consensus 130 ~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~ 209 (268)
..+.+.++||++... ......+..+|.++++...+ ..+...+..+++.+++.+ .+..+|.||.|.. .
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~~--~~~~vV~N~~~~~--------~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHFG--IPVGVVINKYDLN--------D 157 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHcC--CCEEEEEeCCCCC--------c
Confidence 356788999997543 23345678899999999876 456677777777776543 3345999999941 1
Q ss_pred chHHHHHHHHHHhCCeEEE
Q 041042 210 TIASQARAYAKALNATLFF 228 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~ 228 (268)
...+++.+++++.+++++.
T Consensus 158 ~~~~~~~~~~~~~~~~vl~ 176 (179)
T cd03110 158 EIAEEIEDYCEEEGIPILG 176 (179)
T ss_pred chHHHHHHHHHHcCCCeEE
Confidence 2345677788888887764
No 438
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.43 E-value=0.023 Score=48.84 Aligned_cols=138 Identities=18% Similarity=0.209 Sum_probs=74.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCC----C-----CCC------------CCCCcceeeEEEEEE----------E-CCeE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDE----K-----EQG------------GSPGEGLNMMDKTLL----------V-RGAR 131 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~----~-----~~~------------~~~t~~~~~~~~~~~----------~-~~~~ 131 (268)
-+++++|.+|+||||++..+...- . ..+ +....+..+... .. . ....
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence 599999999999999988774321 0 000 111111111100 00 0 0124
Q ss_pred EEEEEEeCCCcccccc-c---hhhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCc
Q 041042 132 ISYSIWEVTGDAKAQD-H---LPVAC--KDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPI 205 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~-~---~~~~~--~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~ 205 (268)
+.+.++||+|...... . ...++ ...+-+++|.|++-.. +++..++. .+..-.+-=+|.||.|-.
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~---~f~~~~~~~~I~TKlDet----- 224 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIIT---NFKDIHIDGIVFTKFDET----- 224 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHH---HhCCCCCCEEEEEeecCC-----
Confidence 5788999999654221 1 11222 2346789999976322 22333333 333322224999999941
Q ss_pred cchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 206 DLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
. ..-.+-.++...+.|+..++ +|++|.
T Consensus 225 --~--~~G~~l~~~~~~~~Pi~~it--~Gq~vp 251 (270)
T PRK06731 225 --A--SSGELLKIPAVSSAPIVLMT--DGQDVK 251 (270)
T ss_pred --C--CccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence 1 23446667778888877764 455554
No 439
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.37 E-value=0.0028 Score=53.03 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
=|+++|++|||||||++-+.+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988763
No 440
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.34 E-value=0.02 Score=46.11 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.1
Q ss_pred EEEEcCCCChHHHHHHHHhcCC
Q 041042 86 ISLLGDCHIGKTSFLEKYVGDE 107 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~~ 107 (268)
|+++|++||||+||++++....
T Consensus 5 ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 5 IVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999998763
No 441
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.32 E-value=0.0046 Score=54.94 Aligned_cols=58 Identities=14% Similarity=0.306 Sum_probs=40.3
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCc
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEK-EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGD 142 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 142 (268)
-...+.+-|+|-|||||||+||+|..... .....| |++..-..+..+ -.+.+.|.+|.
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~p--GvT~smqeV~Ld---k~i~llDsPgi 307 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVP--GVTRSMQEVKLD---KKIRLLDSPGI 307 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCc--cchhhhhheecc---CCceeccCCce
Confidence 35569999999999999999999988764 333444 444333444433 23668999983
No 442
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=96.26 E-value=0.26 Score=39.13 Aligned_cols=141 Identities=15% Similarity=0.122 Sum_probs=92.3
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
......|+++|..+.++..|...+....-. +. ..+..-. . +-+ +. ..... -...|.|
T Consensus 12 ~ln~atiLLVg~e~~~~~~LA~a~l~~~~~----------~~-l~Vh~a~-s----LPL-p~--e~~~l----RprIDlI 68 (176)
T PF11111_consen 12 ELNTATILLVGTEEALLQQLAEAMLEEDKE----------FK-LKVHLAK-S----LPL-PS--ENNNL----RPRIDLI 68 (176)
T ss_pred CcceeEEEEecccHHHHHHHHHHHHhhccc----------ee-EEEEEec-c----CCC-cc--cccCC----CceeEEE
Confidence 455689999999999999999998763210 11 1110000 0 000 00 00111 1356999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
++++|..+.-|++.++.-+..+........+.++++-... ++...+..+++.+++..+.++++.+--.+.++...
T Consensus 69 VFvinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~a~~-----~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~ 143 (176)
T PF11111_consen 69 VFVINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATNAGR-----ESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTS 143 (176)
T ss_pred EEEEecCCcccHHHHHHHHhhCChhhhccceEEEEcCCCc-----ccccccCHHHHHHHHHHhCCCEEEeecccchHHHH
Confidence 9999999999999999877777554444455445544442 13344558999999999999999998888877777
Q ss_pred HHHHHHHHH
Q 041042 240 ILKFITAKL 248 (268)
Q Consensus 240 ~f~~l~~~i 248 (268)
+-+.|.+.+
T Consensus 144 lAqRLL~~l 152 (176)
T PF11111_consen 144 LAQRLLRML 152 (176)
T ss_pred HHHHHHHHH
Confidence 666666544
No 443
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.24 E-value=0.0038 Score=47.48 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcCC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDE 107 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~ 107 (268)
.++|+|..|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999999886653
No 444
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.24 E-value=0.017 Score=46.22 Aligned_cols=42 Identities=12% Similarity=0.048 Sum_probs=25.6
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCC
Q 041042 157 IAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDD 199 (268)
Q Consensus 157 ~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl 199 (268)
|++++|.|+.++.+-.+ ..+.+.+.....+.|.|+|.||+||
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~l~~~~kp~IlVlNK~DL 42 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVLQAGGNKKLVLVLNKIDL 42 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHHhccCCCCEEEEEehhhc
Confidence 78999999987643211 1222222111234567899999997
No 445
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.16 E-value=0.0056 Score=40.08 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=18.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
-.+|.|+.|+|||||+..+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999988743
No 446
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.14 E-value=0.0049 Score=41.30 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=18.5
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 041042 86 ISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~ 106 (268)
|++.|.+|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999988654
No 447
>PRK06217 hypothetical protein; Validated
Probab=96.05 E-value=0.0057 Score=49.31 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.||+|+|.+|+|||||.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998653
No 448
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.03 E-value=0.02 Score=43.63 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-|++.|+.|+|||||++.+...
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999998775
No 449
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.03 E-value=0.0051 Score=46.13 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=18.9
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 041042 86 ISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~ 106 (268)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998664
No 450
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.02 E-value=0.0064 Score=45.45 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=21.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEK 108 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~ 108 (268)
-.++++|++|+|||+++..+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 3689999999999999999977654
No 451
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.02 E-value=0.064 Score=44.72 Aligned_cols=101 Identities=10% Similarity=0.130 Sum_probs=62.5
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHH--HHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccch
Q 041042 132 ISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV--IRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQ 208 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~--~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~ 208 (268)
+.+.|.|+.|... .+....+..+|.+|+=.-.+..+.-+.+ .+|+.++.+.....+| -|+.|+..- ...
T Consensus 84 ~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~------~~~ 155 (231)
T PF07015_consen 84 FDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPA------ARL 155 (231)
T ss_pred CCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCc------chh
Confidence 5688999988644 3345566789999988776644433222 2566655544444455 599999872 112
Q ss_pred hchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHH
Q 041042 209 WTIASQARAYAKALNATLFFSSATYNINVNKILK 242 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~ 242 (268)
......+.++.+ ++++|.+.-.......++|.
T Consensus 156 ~~~~~~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 156 TRAQRIISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred hHHHHHHHHHHh--cCCccccccccHHHHHHHHH
Confidence 222333344443 48888888887777777766
No 452
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.91 E-value=0.0065 Score=45.36 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 041042 86 ISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~ 106 (268)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998654
No 453
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.90 E-value=0.013 Score=48.09 Aligned_cols=18 Identities=28% Similarity=0.504 Sum_probs=16.5
Q ss_pred EEEEcCCCChHHHHHHHH
Q 041042 86 ISLLGDCHIGKTSFLEKY 103 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l 103 (268)
.+++|++|||||||++.|
T Consensus 36 TAlIGPSGcGKST~LR~l 53 (253)
T COG1117 36 TALIGPSGCGKSTLLRCL 53 (253)
T ss_pred EEEECCCCcCHHHHHHHH
Confidence 469999999999999887
No 454
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.90 E-value=0.0068 Score=50.43 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-|+|+|++|+|||||++-+-+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4889999999999999987553
No 455
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.88 E-value=0.0069 Score=48.96 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|.+|+|||||++.+.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999654
No 456
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.87 E-value=0.0066 Score=46.38 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=18.3
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 041042 86 ISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~ 105 (268)
|+++|++|+|||+|++.+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999998764
No 457
>PLN03025 replication factor C subunit; Provisional
Probab=95.87 E-value=0.062 Score=47.33 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDE 107 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~ 107 (268)
.+++.|++|+||||++..+...-
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999886653
No 458
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.85 E-value=0.0075 Score=46.30 Aligned_cols=21 Identities=29% Similarity=0.619 Sum_probs=19.1
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 041042 86 ISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~ 106 (268)
|+|+|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999764
No 459
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=95.83 E-value=0.043 Score=46.40 Aligned_cols=69 Identities=16% Similarity=0.247 Sum_probs=46.5
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChh-------hHHHHHH---HHHHHHHh--CCCCceEEEEeCCC
Q 041042 131 RISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRC-------TLKSVIR---WYQQARKC--NQTAIPIIIGTKFD 198 (268)
Q Consensus 131 ~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~-------s~~~~~~---~~~~i~~~--~~~~~~ilvgnK~D 198 (268)
.+.++++|.+||..-+.-|-+++.+..++|+|...++.. +-..+++ ....+..+ -....+||..||.|
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD 280 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 280 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence 466899999999998899999999999999999876421 1112222 22222111 11334578999999
Q ss_pred C
Q 041042 199 D 199 (268)
Q Consensus 199 l 199 (268)
|
T Consensus 281 l 281 (379)
T KOG0099|consen 281 L 281 (379)
T ss_pred H
Confidence 6
No 460
>PRK01889 GTPase RsgA; Reviewed
Probab=95.81 E-value=0.011 Score=52.96 Aligned_cols=23 Identities=26% Similarity=0.686 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-+++++|.+|+|||||++.+.+.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 47999999999999999999874
No 461
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.80 E-value=0.0073 Score=48.33 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-++|+|.+|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998664
No 462
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.77 E-value=0.0079 Score=48.76 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
-|+++|++|||||||+|-+.+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhc
Confidence 588999999999999998765
No 463
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.77 E-value=0.0071 Score=46.65 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.|.|+|..|+|||||+..+++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 464
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.77 E-value=0.0077 Score=53.13 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.2
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 041042 86 ISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~ 106 (268)
++++|++|||||||++.+.+-
T Consensus 32 ~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999998763
No 465
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.76 E-value=0.0096 Score=48.24 Aligned_cols=22 Identities=9% Similarity=0.176 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
=|+|+|++|||||||++++...
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3889999999999999999875
No 466
>PRK03839 putative kinase; Provisional
Probab=95.76 E-value=0.0077 Score=48.31 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
+|+|+|.+|+||||+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988654
No 467
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.69 E-value=0.065 Score=48.67 Aligned_cols=24 Identities=25% Similarity=0.610 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcC
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.-+|+|+|+.|||||||+.-+++.
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcC
Confidence 358999999999999999988764
No 468
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.68 E-value=0.0094 Score=47.67 Aligned_cols=22 Identities=18% Similarity=0.462 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.|+|+|.+|+|||||++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5889999999999999999874
No 469
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.66 E-value=0.0084 Score=47.84 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=16.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
--++|.|.+|+|||+|++++..
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998765
No 470
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.65 E-value=0.01 Score=43.50 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=18.7
Q ss_pred EEEEEEcCCCChHHHHHHHHh
Q 041042 84 LKISLLGDCHIGKTSFLEKYV 104 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~ 104 (268)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 358999999999999999875
No 471
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.63 E-value=0.0096 Score=50.54 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
=++++|+.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 367999999999999999876
No 472
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=95.61 E-value=0.08 Score=41.89 Aligned_cols=93 Identities=10% Similarity=0.029 Sum_probs=56.5
Q ss_pred eEEEEEEEeCCCccccccchhhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceE-EEEeCCCCCCCCCcc
Q 041042 130 ARISYSIWEVTGDAKAQDHLPVAC--KDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFDDFIQLPID 206 (268)
Q Consensus 130 ~~~~l~i~Dt~G~~~~~~~~~~~~--~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~i-lvgnK~Dl~~~~~~~ 206 (268)
..+.+.+.|+++.-. ......+ ..+|.+|+|...+ ..+...+..+++.+.+.. .+.+ +|.|+.+-...-...
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~~--~~~~gvv~N~~~~~~~~~~~ 140 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKVN--IPILGVVENMSYFVCPHCGK 140 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhcC--CCeEEEEEcCCcccCCCCCC
Confidence 356688999998532 2122222 5789999998765 567778888888877653 2344 889998832000001
Q ss_pred chhc-hHHHHHHHHHHhCCeEE
Q 041042 207 LQWT-IASQARAYAKALNATLF 227 (268)
Q Consensus 207 ~~~~-~~~~~~~~~~~~~~~~~ 227 (268)
.... .....+++++.++.+++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~ 162 (169)
T cd02037 141 KIYIFGKGGGEKLAEELGVPLL 162 (169)
T ss_pred cccccCCccHHHHHHHcCCCEE
Confidence 1111 13466778888776654
No 473
>PRK14530 adenylate kinase; Provisional
Probab=95.60 E-value=0.011 Score=49.00 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=19.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.+|+|+|.+|+||||+.+.+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998854
No 474
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.57 E-value=0.01 Score=44.61 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=18.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-++|.|.+|+|||++++++...
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999775
No 475
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.56 E-value=0.012 Score=47.33 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=19.1
Q ss_pred EEEEEEcCCCChHHHHHHHHh
Q 041042 84 LKISLLGDCHIGKTSFLEKYV 104 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~ 104 (268)
-.++|+|+.|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999875
No 476
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.55 E-value=0.011 Score=49.19 Aligned_cols=21 Identities=24% Similarity=0.570 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
-|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 488999999999999998866
No 477
>COG1161 Predicted GTPases [General function prediction only]
Probab=95.54 E-value=0.028 Score=49.60 Aligned_cols=92 Identities=17% Similarity=0.148 Sum_probs=61.9
Q ss_pred CCc-cccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHH
Q 041042 140 TGD-AKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAY 218 (268)
Q Consensus 140 ~G~-~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~ 218 (268)
+|+ ..+.......+...|+|+-|.|+-++.+-.. ..+.+.....+.++|+||+|| .+ ..+..+-.+.+
T Consensus 18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v~~k~~i~vlNK~DL---~~---~~~~~~W~~~~ 86 (322)
T COG1161 18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIVKEKPKLLVLNKADL---AP---KEVTKKWKKYF 86 (322)
T ss_pred CCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHHccCCcEEEEehhhc---CC---HHHHHHHHHHH
Confidence 443 4455667778889999999999998875432 223333334555999999998 22 33344555555
Q ss_pred HHHhCCeEEEEcCCCCcCHHHHHH
Q 041042 219 AKALNATLFFSSATYNINVNKILK 242 (268)
Q Consensus 219 ~~~~~~~~~~~Sa~~~~~i~~~f~ 242 (268)
.++.+...+.++++.+.+...+..
T Consensus 87 ~~~~~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 87 KKEEGIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred HhcCCCccEEEEeecccCccchHH
Confidence 556577778888888877666653
No 478
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.50 E-value=0.013 Score=48.54 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 6889999999999999999775
No 479
>PF05729 NACHT: NACHT domain
Probab=95.50 E-value=0.011 Score=46.03 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 041042 86 ISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~ 106 (268)
++|.|.+|+|||+++.++...
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 689999999999999998764
No 480
>PRK13949 shikimate kinase; Provisional
Probab=95.49 E-value=0.012 Score=46.89 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
+|+|+|.+|+||||+.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998764
No 481
>PRK08233 hypothetical protein; Provisional
Probab=95.48 E-value=0.014 Score=46.57 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.-|+|.|.+|+|||||.+++...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 56788999999999999998753
No 482
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.48 E-value=0.013 Score=47.06 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
=+++|+|++|+|||||+|-+.+
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHh
Confidence 3789999999999999998866
No 483
>PRK14532 adenylate kinase; Provisional
Probab=95.46 E-value=0.012 Score=47.41 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
+|+++|.||+||||+..++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998653
No 484
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.46 E-value=0.012 Score=47.22 Aligned_cols=21 Identities=33% Similarity=0.301 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.|+++|.+|+||||+++++..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999873
No 485
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=95.43 E-value=0.11 Score=45.05 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=43.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC--CcEEEEE
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKD--SIAILFM 162 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~--a~~vilv 162 (268)
.|+|.|.+|+||||+++.+... |. ..+++ ...+.+..+....... .+.+.++
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~~~----------g~------~~~d~----------~~~~L~~~l~~~~~~~~~~~~~av~ 61 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALEDL----------GY------YCVDN----------LPPSLLPKLVELLAQSGGIRKVAVV 61 (288)
T ss_pred EEEEECCCCCcHHHHHHHHHHc----------CC------eEECC----------cCHHHHHHHHHHHHhcCCCCCeEEE
Confidence 6899999999999999998421 11 01122 1112222222222221 3567888
Q ss_pred EeCCChhhHHHHHHHHHHHHHh
Q 041042 163 FDLTSRCTLKSVIRWYQQARKC 184 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~ 184 (268)
.|+.+...+.....++..+...
T Consensus 62 iD~r~~~~~~~~~~~~~~L~~~ 83 (288)
T PRK05416 62 IDVRSRPFFDDLPEALDELRER 83 (288)
T ss_pred EccCchhhHHHHHHHHHHHHHc
Confidence 8988766555666777777664
No 486
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.43 E-value=0.016 Score=47.65 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcC
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
..-|+|+|.+|||||||++.+...
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHhc
Confidence 466889999999999999999754
No 487
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.41 E-value=0.014 Score=48.21 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|.+|+|||||++.+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999998874
No 488
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.41 E-value=0.13 Score=48.43 Aligned_cols=33 Identities=18% Similarity=-0.012 Sum_probs=23.3
Q ss_pred HHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHH
Q 041042 216 RAYAKALNATLFFSSATYNINVNKILKFITAKL 248 (268)
Q Consensus 216 ~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~i 248 (268)
.++....++..+...+.+..-+...+..|+..-
T Consensus 197 ~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E 229 (519)
T PF03215_consen 197 KEILNHPGITRIKFNPIAPTFMKKALKRILKKE 229 (519)
T ss_pred HHHHhCCCceEEEecCCCHHHHHHHHHHHHHHH
Confidence 345566678888888777777777777776643
No 489
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.38 E-value=0.014 Score=46.61 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.-+.|+|.+|+|||||+.++...
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHH
Confidence 35789999999999999998764
No 490
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.38 E-value=0.016 Score=47.64 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..-|+|+|.+|+|||||++.+.+
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999875
No 491
>PRK02496 adk adenylate kinase; Provisional
Probab=95.38 E-value=0.016 Score=46.65 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.|++|+|.+|+||||+.+.+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998864
No 492
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.37 E-value=0.015 Score=47.67 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998774
No 493
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.36 E-value=0.015 Score=47.78 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|..|+|||||++.+.+-
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999775
No 494
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.34 E-value=0.015 Score=48.95 Aligned_cols=24 Identities=17% Similarity=0.432 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcC
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++++|+|.+|+|||+|+..++..
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 489999999999999999888754
No 495
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.33 E-value=0.014 Score=47.12 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|..|+|||||++.+.+-
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988764
No 496
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.32 E-value=0.016 Score=47.44 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.+.|+|..|+|||||++.+.+-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999775
No 497
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.32 E-value=0.014 Score=47.99 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++++|.+|+|||||++.+.+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999774
No 498
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.31 E-value=0.016 Score=47.60 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|..|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999875
No 499
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.30 E-value=0.016 Score=48.00 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|..|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999998875
No 500
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=95.30 E-value=0.015 Score=48.15 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcCC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDE 107 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~ 107 (268)
-++++|..|+|||||++.+.+-.
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~ 53 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLV 53 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
Done!