Query 041042
Match_columns 268
No_of_seqs 271 out of 1784
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 04:44:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 9.4E-42 3.2E-46 282.7 19.4 168 80-252 10-178 (216)
2 3ihw_A Centg3; RAS, centaurin, 100.0 2E-34 7E-39 232.6 20.2 163 80-252 17-182 (184)
3 3q3j_B RHO-related GTP-binding 100.0 1.5E-34 5.1E-39 239.0 19.4 177 79-256 23-209 (214)
4 2hup_A RAS-related protein RAB 100.0 1.6E-34 5.4E-39 236.4 19.3 167 80-251 26-194 (201)
5 2ew1_A RAS-related protein RAB 100.0 2.8E-34 9.6E-39 235.2 20.7 167 80-251 23-190 (201)
6 3c5c_A RAS-like protein 12; GD 100.0 3.3E-34 1.1E-38 231.8 20.1 164 80-250 18-186 (187)
7 3reg_A RHO-like small GTPase; 100.0 7E-34 2.4E-38 230.7 22.0 171 79-253 19-191 (194)
8 2a5j_A RAS-related protein RAB 100.0 8.8E-34 3E-38 229.7 22.4 167 80-251 18-185 (191)
9 2gf9_A RAS-related protein RAB 100.0 1.5E-33 5.1E-38 227.9 23.2 166 80-250 19-185 (189)
10 3tw8_B RAS-related protein RAB 100.0 1.3E-33 4.4E-38 225.6 21.6 168 80-252 6-173 (181)
11 3t5g_A GTP-binding protein RHE 100.0 2.1E-33 7.2E-38 225.0 22.1 170 80-255 3-174 (181)
12 3cbq_A GTP-binding protein REM 100.0 6.6E-34 2.3E-38 231.8 19.2 168 80-252 20-190 (195)
13 1x3s_A RAS-related protein RAB 100.0 1.9E-33 6.3E-38 227.7 21.6 172 80-257 12-185 (195)
14 2hxs_A RAB-26, RAS-related pro 100.0 3.4E-34 1.1E-38 228.8 17.0 169 80-253 3-176 (178)
15 2fu5_C RAS-related protein RAB 100.0 2.6E-34 9E-39 230.7 16.3 168 80-252 5-173 (183)
16 1ek0_A Protein (GTP-binding pr 100.0 2.2E-33 7.7E-38 221.8 20.6 166 82-250 2-169 (170)
17 1z08_A RAS-related protein RAB 100.0 1.5E-33 5.2E-38 223.1 19.6 165 81-250 4-169 (170)
18 1z2a_A RAS-related protein RAB 100.0 1.8E-33 6.2E-38 222.1 19.6 164 82-250 4-167 (168)
19 1z0j_A RAB-22, RAS-related pro 100.0 6.5E-33 2.2E-37 219.3 22.7 166 80-250 3-169 (170)
20 1r2q_A RAS-related protein RAB 100.0 3.3E-33 1.1E-37 220.8 20.9 166 80-250 3-169 (170)
21 1z0f_A RAB14, member RAS oncog 100.0 4E-33 1.4E-37 222.3 21.6 166 80-250 12-178 (179)
22 3tkl_A RAS-related protein RAB 100.0 5.5E-33 1.9E-37 225.2 22.3 168 80-252 13-181 (196)
23 2oil_A CATX-8, RAS-related pro 100.0 3.6E-33 1.2E-37 226.2 21.2 167 80-251 22-189 (193)
24 2efe_B Small GTP-binding prote 100.0 5.6E-33 1.9E-37 222.2 22.1 168 80-252 9-177 (181)
25 1g16_A RAS-related protein SEC 100.0 2.5E-33 8.4E-38 221.7 19.4 164 82-251 2-166 (170)
26 2g3y_A GTP-binding protein GEM 100.0 2.3E-33 7.8E-38 231.5 20.0 166 80-251 34-204 (211)
27 2il1_A RAB12; G-protein, GDP, 100.0 1.5E-33 5.2E-38 228.7 18.6 166 80-250 23-190 (192)
28 1wms_A RAB-9, RAB9, RAS-relate 100.0 5.1E-33 1.7E-37 221.7 21.3 167 80-252 4-176 (177)
29 3kkq_A RAS-related protein M-R 100.0 6.2E-33 2.1E-37 222.7 21.8 165 80-250 15-182 (183)
30 2atx_A Small GTP binding prote 100.0 6E-33 2E-37 225.1 21.7 170 80-250 15-193 (194)
31 1z06_A RAS-related protein RAB 100.0 3E-33 1E-37 226.1 19.5 166 80-250 17-188 (189)
32 1gwn_A RHO-related GTP-binding 100.0 1.8E-33 6.1E-38 231.1 18.5 170 80-250 25-204 (205)
33 3dz8_A RAS-related protein RAB 100.0 2.5E-34 8.5E-39 233.0 13.2 167 80-251 20-187 (191)
34 3q85_A GTP-binding protein REM 100.0 3.8E-33 1.3E-37 220.8 19.4 164 83-251 2-168 (169)
35 2g6b_A RAS-related protein RAB 100.0 1.1E-32 3.7E-37 220.3 22.1 168 80-252 7-176 (180)
36 2bme_A RAB4A, RAS-related prot 100.0 6.3E-33 2.2E-37 223.0 20.8 168 80-252 7-175 (186)
37 2bcg_Y Protein YP2, GTP-bindin 100.0 1.1E-32 3.9E-37 225.6 22.7 168 80-252 5-173 (206)
38 2iwr_A Centaurin gamma 1; ANK 100.0 4.4E-33 1.5E-37 222.6 19.7 162 81-252 5-171 (178)
39 2o52_A RAS-related protein RAB 100.0 2.5E-33 8.6E-38 229.0 18.5 168 80-252 22-190 (200)
40 2fg5_A RAB-22B, RAS-related pr 100.0 4.5E-33 1.5E-37 225.8 19.8 168 80-252 20-188 (192)
41 1m7b_A RND3/RHOE small GTP-bin 100.0 3.6E-33 1.2E-37 224.8 18.9 170 80-250 4-183 (184)
42 3oes_A GTPase rhebl1; small GT 100.0 2.5E-33 8.5E-38 229.0 18.1 170 80-255 21-192 (201)
43 1zbd_A Rabphilin-3A; G protein 100.0 1.4E-32 4.7E-37 224.5 22.1 167 80-251 5-172 (203)
44 2j0v_A RAC-like GTP-binding pr 100.0 5.3E-33 1.8E-37 228.6 19.6 170 81-255 7-185 (212)
45 3cpj_B GTP-binding protein YPT 100.0 9.1E-33 3.1E-37 229.4 20.6 170 80-254 10-180 (223)
46 1mh1_A RAC1; GTP-binding, GTPa 100.0 1E-32 3.4E-37 221.5 20.1 169 81-253 3-183 (186)
47 2y8e_A RAB-protein 6, GH09086P 100.0 8.8E-33 3E-37 220.3 19.6 166 80-250 11-177 (179)
48 3bc1_A RAS-related protein RAB 100.0 8.6E-33 2.9E-37 223.2 19.7 169 79-252 7-187 (195)
49 2p5s_A RAS and EF-hand domain 100.0 2.7E-33 9.1E-38 228.4 16.6 171 80-250 25-197 (199)
50 2q3h_A RAS homolog gene family 100.0 1.6E-32 5.3E-37 223.8 20.6 172 80-252 17-197 (201)
51 2f7s_A C25KG, RAS-related prot 100.0 1.5E-33 5E-38 232.8 14.6 168 80-252 22-201 (217)
52 1c1y_A RAS-related protein RAP 100.0 1.5E-32 5.2E-37 216.6 19.8 162 82-249 2-166 (167)
53 2fn4_A P23, RAS-related protei 100.0 1.7E-32 5.7E-37 219.1 20.1 167 80-252 6-174 (181)
54 2nzj_A GTP-binding protein REM 100.0 2.4E-32 8.4E-37 217.2 20.6 164 82-251 3-170 (175)
55 3clv_A RAB5 protein, putative; 100.0 3.4E-32 1.2E-36 221.2 21.7 163 81-250 5-204 (208)
56 1u8z_A RAS-related protein RAL 100.0 1.9E-32 6.6E-37 215.8 19.6 163 82-250 3-167 (168)
57 2gco_A H9, RHO-related GTP-bin 100.0 4.6E-32 1.6E-36 221.5 22.3 166 81-250 23-200 (201)
58 3con_A GTPase NRAS; structural 100.0 2.8E-32 9.6E-37 220.3 20.7 165 80-251 18-184 (190)
59 1vg8_A RAS-related protein RAB 100.0 1E-32 3.4E-37 225.7 18.2 168 80-253 5-178 (207)
60 2bov_A RAla, RAS-related prote 100.0 2.4E-32 8.2E-37 223.1 20.2 168 79-252 10-179 (206)
61 2a9k_A RAS-related protein RAL 100.0 1.4E-32 4.7E-37 220.7 18.1 167 80-252 15-183 (187)
62 4dsu_A GTPase KRAS, isoform 2B 100.0 4.8E-32 1.6E-36 218.1 21.3 170 82-258 3-174 (189)
63 3cph_A RAS-related protein SEC 100.0 4.5E-32 1.6E-36 222.8 20.8 166 80-251 17-183 (213)
64 2j1l_A RHO-related GTP-binding 100.0 2.4E-32 8E-37 225.6 19.1 169 81-253 32-212 (214)
65 3q72_A GTP-binding protein RAD 100.0 2.2E-32 7.6E-37 215.7 18.1 161 83-250 2-164 (166)
66 1ky3_A GTP-binding protein YPT 100.0 1.6E-32 5.3E-37 219.5 17.3 168 80-251 5-179 (182)
67 1kao_A RAP2A; GTP-binding prot 100.0 4E-32 1.4E-36 213.7 18.9 162 82-249 2-165 (167)
68 3gj0_A GTP-binding nuclear pro 100.0 5.4E-33 1.9E-37 230.2 13.7 168 79-253 11-178 (221)
69 2cjw_A GTP-binding protein GEM 100.0 7.2E-32 2.5E-36 219.1 19.5 164 82-251 5-173 (192)
70 2fv8_A H6, RHO-related GTP-bin 100.0 9.6E-32 3.3E-36 220.6 20.2 169 81-253 23-203 (207)
71 3bwd_D RAC-like GTP-binding pr 100.0 9.8E-33 3.3E-37 221.0 13.9 165 81-250 6-181 (182)
72 2ce2_X GTPase HRAS; signaling 100.0 2.1E-31 7.2E-36 209.2 21.0 161 83-250 3-165 (166)
73 2yc2_C IFT27, small RAB-relate 100.0 1.3E-32 4.3E-37 225.0 14.1 168 81-252 18-194 (208)
74 4gzl_A RAS-related C3 botulinu 100.0 7.5E-32 2.6E-36 221.0 17.8 165 80-248 27-203 (204)
75 2gf0_A GTP-binding protein DI- 100.0 1.2E-31 4.2E-36 217.7 18.2 166 81-253 6-174 (199)
76 2erx_A GTP-binding protein DI- 100.0 1.3E-31 4.6E-36 211.9 17.9 163 83-251 3-168 (172)
77 2atv_A RERG, RAS-like estrogen 100.0 1.6E-31 5.4E-36 217.3 18.6 165 80-251 25-192 (196)
78 4djt_A GTP-binding nuclear pro 100.0 8.3E-32 2.8E-36 222.4 15.7 171 80-255 8-180 (218)
79 4bas_A ADP-ribosylation factor 100.0 1.7E-31 5.8E-36 216.9 16.5 167 79-252 13-191 (199)
80 3t1o_A Gliding protein MGLA; G 100.0 2.3E-32 7.7E-37 221.4 11.2 165 80-252 11-194 (198)
81 3l0i_B RAS-related protein RAB 100.0 1.2E-33 4.2E-38 230.5 3.6 167 80-251 30-197 (199)
82 2zej_A Dardarin, leucine-rich 100.0 6.4E-32 2.2E-36 217.7 11.9 166 83-253 2-181 (184)
83 3llu_A RAS-related GTP-binding 100.0 1E-31 3.5E-36 218.6 13.1 163 80-249 17-196 (196)
84 2h57_A ADP-ribosylation factor 100.0 1.5E-30 5.3E-35 210.3 17.8 161 80-251 18-188 (190)
85 1zd9_A ADP-ribosylation factor 100.0 3E-31 1E-35 214.3 13.2 165 80-251 19-186 (188)
86 1zj6_A ADP-ribosylation factor 100.0 1.5E-30 5.1E-35 209.9 15.0 161 82-254 15-182 (187)
87 1f6b_A SAR1; gtpases, N-termin 100.0 2.2E-30 7.6E-35 211.3 16.0 156 81-248 23-197 (198)
88 1r8s_A ADP-ribosylation factor 100.0 9.3E-31 3.2E-35 206.0 13.2 161 84-251 1-163 (164)
89 1upt_A ARL1, ADP-ribosylation 100.0 3.5E-30 1.2E-34 203.9 16.4 162 82-251 6-170 (171)
90 2h17_A ADP-ribosylation factor 100.0 6.3E-31 2.1E-35 211.1 12.1 156 80-247 18-180 (181)
91 1m2o_B GTP-binding protein SAR 100.0 7.7E-30 2.6E-34 206.7 17.4 155 81-247 21-189 (190)
92 2f9l_A RAB11B, member RAS onco 100.0 4.8E-29 1.6E-33 203.3 22.0 165 82-251 4-169 (199)
93 1ksh_A ARF-like protein 2; sma 100.0 7.7E-30 2.6E-34 205.2 15.5 159 81-251 16-181 (186)
94 1oix_A RAS-related protein RAB 100.0 7.6E-29 2.6E-33 201.1 21.3 164 80-248 26-190 (191)
95 2wkq_A NPH1-1, RAS-related C3 100.0 1.9E-29 6.7E-34 220.6 19.1 168 83-251 155-331 (332)
96 1fzq_A ADP-ribosylation factor 100.0 2E-30 6.9E-35 208.4 11.6 159 81-251 14-179 (181)
97 2b6h_A ADP-ribosylation factor 100.0 4.7E-30 1.6E-34 208.3 13.8 164 80-250 26-191 (192)
98 3r7w_B Gtpase2, GTP-binding pr 100.0 7E-31 2.4E-35 227.8 8.0 167 85-260 1-184 (331)
99 3c5h_A Glucocorticoid receptor 100.0 3.5E-30 1.2E-34 218.4 10.9 163 80-249 16-254 (255)
100 2x77_A ADP-ribosylation factor 100.0 1.2E-29 3.9E-34 204.8 12.6 164 81-252 20-186 (189)
101 3th5_A RAS-related C3 botulinu 99.9 1E-31 3.6E-36 219.7 0.0 167 81-248 28-203 (204)
102 1moz_A ARL1, ADP-ribosylation 100.0 9E-30 3.1E-34 204.0 9.9 157 82-250 17-180 (183)
103 2wji_A Ferrous iron transport 100.0 8.4E-29 2.9E-33 195.9 14.9 153 83-248 3-163 (165)
104 3r7w_A Gtpase1, GTP-binding pr 100.0 3.8E-28 1.3E-32 211.3 16.3 165 82-253 2-184 (307)
105 2fh5_B SR-beta, signal recogni 100.0 8.3E-28 2.8E-32 197.8 16.0 162 81-248 5-214 (214)
106 3o47_A ADP-ribosylation factor 100.0 1.6E-28 5.5E-33 215.5 11.1 164 81-251 163-328 (329)
107 2lkc_A Translation initiation 99.9 4.1E-27 1.4E-31 187.5 15.5 156 82-253 7-174 (178)
108 3lvq_E ARF-GAP with SH3 domain 99.9 1.4E-27 4.8E-32 220.6 14.1 167 80-254 319-488 (497)
109 2wjg_A FEOB, ferrous iron tran 99.9 3.3E-27 1.1E-31 190.0 12.8 159 81-252 5-171 (188)
110 2qu8_A Putative nucleolar GTP- 99.9 1.3E-26 4.4E-31 192.9 15.4 166 81-252 27-207 (228)
111 1svi_A GTP-binding protein YSX 99.9 9.1E-27 3.1E-31 188.4 13.2 161 80-249 20-194 (195)
112 2cxx_A Probable GTP-binding pr 99.9 9.1E-27 3.1E-31 187.4 10.5 155 84-252 2-186 (190)
113 3dpu_A RAB family protein; roc 99.9 4.2E-27 1.4E-31 219.2 9.4 166 80-253 38-211 (535)
114 2gj8_A MNME, tRNA modification 99.9 5.1E-27 1.8E-31 187.1 7.9 153 83-250 4-166 (172)
115 3pqc_A Probable GTP-binding pr 99.9 1.8E-25 6E-30 180.4 16.2 159 80-250 20-194 (195)
116 2dyk_A GTP-binding protein; GT 99.9 5.6E-26 1.9E-30 177.8 11.8 148 84-248 2-160 (161)
117 3a1s_A Iron(II) transport prot 99.9 1.9E-25 6.6E-30 189.5 14.4 156 81-249 3-166 (258)
118 3iev_A GTP-binding protein ERA 99.9 8.4E-25 2.9E-29 190.2 17.1 176 80-263 7-195 (308)
119 3b1v_A Ferrous iron uptake tra 99.9 1.6E-25 5.4E-30 191.3 11.0 153 83-249 3-163 (272)
120 3iby_A Ferrous iron transport 99.9 1.4E-25 4.9E-30 190.1 9.7 151 84-247 2-164 (256)
121 3i8s_A Ferrous iron transport 99.9 1.8E-25 6.1E-30 191.4 9.3 157 82-251 2-170 (274)
122 4dhe_A Probable GTP-binding pr 99.9 1.3E-24 4.5E-29 179.6 12.3 166 81-252 27-213 (223)
123 3k53_A Ferrous iron transport 99.9 4.3E-24 1.5E-28 182.4 13.5 159 82-252 2-168 (271)
124 1nrj_B SR-beta, signal recogni 99.9 5.3E-25 1.8E-29 181.4 6.3 148 80-236 9-170 (218)
125 1wf3_A GTP-binding protein; GT 99.9 2.4E-23 8.3E-28 180.3 16.6 167 81-258 5-181 (301)
126 1lnz_A SPO0B-associated GTP-bi 99.9 6.2E-24 2.1E-28 186.8 13.0 157 85-253 160-333 (342)
127 2hjg_A GTP-binding protein ENG 99.9 3.4E-24 1.2E-28 194.8 9.6 161 81-251 173-350 (436)
128 3gee_A MNME, tRNA modification 99.9 8.9E-23 3E-27 186.7 15.0 156 83-249 233-397 (476)
129 4dcu_A GTP-binding protein ENG 99.9 5.7E-23 2E-27 187.8 11.7 162 81-252 193-371 (456)
130 3qq5_A Small GTP-binding prote 99.9 1.4E-23 4.9E-28 189.1 6.9 159 80-251 31-197 (423)
131 1mky_A Probable GTP-binding pr 99.9 3.6E-22 1.2E-26 181.6 16.2 152 84-251 2-167 (439)
132 2e87_A Hypothetical protein PH 99.9 1.2E-21 4.1E-26 173.7 18.8 160 83-251 167-337 (357)
133 1wb1_A Translation elongation 99.9 1.1E-21 3.8E-26 180.1 15.8 159 80-249 16-188 (482)
134 2xtz_A Guanine nucleotide-bind 99.9 1.3E-22 4.6E-27 178.9 8.8 122 130-251 181-346 (354)
135 3sjy_A Translation initiation 99.9 3.8E-21 1.3E-25 173.0 18.5 163 80-252 5-194 (403)
136 1cip_A Protein (guanine nucleo 99.9 3E-22 1E-26 176.6 10.8 128 123-252 186-346 (353)
137 1xzp_A Probable tRNA modificat 99.9 5E-22 1.7E-26 181.9 11.9 153 83-250 243-405 (482)
138 3ohm_A Guanine nucleotide-bind 99.9 1.5E-21 5.1E-26 170.0 13.0 136 113-252 152-320 (327)
139 2xtp_A GTPase IMAP family memb 99.9 2.8E-21 9.5E-26 163.8 13.6 168 80-252 19-210 (260)
140 1s0u_A EIF-2-gamma, translatio 99.9 2E-20 7E-25 168.6 18.9 162 82-251 7-199 (408)
141 1ega_A Protein (GTP-binding pr 99.9 5.5E-21 1.9E-25 165.6 14.3 168 82-260 7-185 (301)
142 4fid_A G protein alpha subunit 99.9 3E-21 1E-25 168.7 12.5 121 130-250 159-328 (340)
143 3lxx_A GTPase IMAP family memb 99.8 1.9E-20 6.6E-25 156.7 16.0 165 80-251 26-215 (239)
144 3geh_A MNME, tRNA modification 99.8 1.7E-21 5.9E-26 177.6 10.0 155 82-252 223-386 (462)
145 1mky_A Probable GTP-binding pr 99.8 1E-20 3.6E-25 172.0 14.9 160 82-251 179-356 (439)
146 3t5d_A Septin-7; GTP-binding p 99.8 1.6E-21 5.3E-26 166.8 8.8 161 82-248 7-202 (274)
147 2qtf_A Protein HFLX, GTP-bindi 99.8 3.2E-20 1.1E-24 164.5 16.6 163 84-253 179-357 (364)
148 2ged_A SR-beta, signal recogni 99.8 3.2E-21 1.1E-25 155.6 9.0 110 81-199 46-168 (193)
149 2qag_A Septin-2, protein NEDD5 99.8 8.6E-22 3E-26 174.7 6.0 163 82-251 36-234 (361)
150 2hjg_A GTP-binding protein ENG 99.8 1.2E-21 4.2E-26 178.0 6.7 154 84-251 4-166 (436)
151 1kk1_A EIF2gamma; initiation o 99.8 8.1E-20 2.8E-24 164.8 17.1 164 80-251 7-201 (410)
152 3j2k_7 ERF3, eukaryotic polype 99.8 8.3E-20 2.8E-24 165.9 15.8 159 80-242 14-217 (439)
153 3p26_A Elongation factor 1 alp 99.8 2E-20 7E-25 172.0 11.1 158 81-239 31-227 (483)
154 3cb4_D GTP-binding protein LEP 99.8 5.3E-20 1.8E-24 172.3 14.0 160 83-252 4-184 (599)
155 1pui_A ENGB, probable GTP-bind 99.8 4.8E-20 1.7E-24 150.7 12.0 160 82-252 25-201 (210)
156 3izy_P Translation initiation 99.8 1.4E-22 4.8E-27 187.2 -3.7 161 83-251 4-169 (537)
157 1jny_A EF-1-alpha, elongation 99.8 6.8E-21 2.3E-25 173.0 6.9 158 82-242 5-205 (435)
158 3lxw_A GTPase IMAP family memb 99.8 1.2E-19 4.2E-24 152.8 13.8 166 81-251 19-209 (247)
159 2ywe_A GTP-binding protein LEP 99.8 2.9E-19 9.9E-24 167.1 16.9 161 82-252 5-186 (600)
160 1u0l_A Probable GTPase ENGC; p 99.8 1.4E-20 4.7E-25 163.0 7.5 134 98-246 32-169 (301)
161 1zun_B Sulfate adenylate trans 99.8 4.3E-20 1.5E-24 167.7 10.8 156 80-241 21-215 (434)
162 2c78_A Elongation factor TU-A; 99.8 3.2E-20 1.1E-24 167.1 8.9 166 80-250 8-212 (405)
163 4dcu_A GTP-binding protein ENG 99.8 2E-20 7E-25 170.9 5.9 158 80-251 20-186 (456)
164 2qnr_A Septin-2, protein NEDD5 99.8 2.7E-20 9.1E-25 161.2 6.2 165 80-251 15-215 (301)
165 1d2e_A Elongation factor TU (E 99.8 1.7E-19 5.8E-24 162.0 10.7 162 83-250 3-195 (397)
166 1udx_A The GTP-binding protein 99.8 7.4E-19 2.5E-23 157.9 14.6 160 85-253 159-328 (416)
167 1g7s_A Translation initiation 99.8 5E-19 1.7E-23 165.7 13.8 162 82-249 4-217 (594)
168 1azs_C GS-alpha; complex (lyas 99.8 7.6E-19 2.6E-23 156.8 14.0 134 115-252 204-387 (402)
169 1r5b_A Eukaryotic peptide chai 99.8 6.2E-20 2.1E-24 168.0 6.0 157 81-241 41-243 (467)
170 3tr5_A RF-3, peptide chain rel 99.8 2.4E-19 8.1E-24 166.0 9.6 116 82-200 12-147 (528)
171 1zo1_I IF2, translation initia 99.8 3.5E-21 1.2E-25 176.5 -2.9 156 83-247 4-164 (501)
172 3izq_1 HBS1P, elongation facto 99.8 7.5E-19 2.6E-23 165.4 12.7 159 81-240 165-362 (611)
173 1zcb_A G alpha I/13; GTP-bindi 99.8 1.4E-18 4.8E-23 153.7 12.2 156 93-252 157-355 (362)
174 2elf_A Protein translation elo 99.8 1.1E-18 3.8E-23 155.1 11.1 147 85-250 23-180 (370)
175 3avx_A Elongation factor TS, e 99.8 1.4E-18 4.8E-23 170.3 12.4 165 80-250 293-486 (1289)
176 1f60_A Elongation factor EEF1A 99.8 1.1E-18 3.8E-23 159.3 10.5 153 81-240 5-202 (458)
177 2aka_B Dynamin-1; fusion prote 99.8 1.2E-19 4E-24 156.5 3.7 160 81-247 24-250 (299)
178 2dy1_A Elongation factor G; tr 99.7 1E-17 3.5E-22 159.3 14.8 115 82-199 8-138 (665)
179 2qag_C Septin-7; cell cycle, c 99.7 5.1E-18 1.7E-22 152.6 9.9 163 80-248 28-225 (418)
180 3mca_A HBS1, elongation factor 99.7 5.5E-19 1.9E-23 165.8 3.7 153 81-238 175-371 (592)
181 3def_A T7I23.11 protein; chlor 99.7 5.3E-17 1.8E-21 137.7 14.8 115 81-199 34-163 (262)
182 1wxq_A GTP-binding protein; st 99.7 4.2E-18 1.4E-22 152.6 5.3 85 84-168 1-114 (397)
183 2j69_A Bacterial dynamin-like 99.7 3.1E-17 1E-21 156.7 9.7 169 82-252 68-327 (695)
184 3t34_A Dynamin-related protein 99.7 2.3E-17 7.7E-22 146.3 6.2 155 84-245 35-256 (360)
185 1h65_A Chloroplast outer envel 99.7 2.6E-16 8.8E-21 134.0 12.3 116 82-199 38-166 (270)
186 2h5e_A Peptide chain release f 99.7 3.3E-16 1.1E-20 145.1 14.0 116 82-200 12-147 (529)
187 2hf9_A Probable hydrogenase ni 99.7 2.3E-19 7.8E-24 148.5 -7.0 154 83-250 38-224 (226)
188 1dar_A EF-G, elongation factor 99.7 2.1E-16 7E-21 150.9 12.3 114 80-200 9-142 (691)
189 2rdo_7 EF-G, elongation factor 99.7 1.8E-15 6.2E-20 144.6 16.5 117 81-200 8-147 (704)
190 2xex_A Elongation factor G; GT 99.6 8.3E-16 2.8E-20 146.8 12.5 113 81-200 8-140 (693)
191 1jwy_B Dynamin A GTPase domain 99.6 6E-16 2.1E-20 134.3 10.0 115 132-253 131-265 (315)
192 2wsm_A Hydrogenase expression/ 99.6 4E-16 1.4E-20 128.4 8.4 154 83-251 30-215 (221)
193 2x2e_A Dynamin-1; nitration, h 99.6 3.1E-17 1.1E-21 145.0 -0.3 157 82-246 30-254 (353)
194 1jal_A YCHF protein; nucleotid 99.6 1E-14 3.4E-19 128.5 15.1 144 83-233 2-240 (363)
195 1n0u_A EF-2, elongation factor 99.6 4.1E-15 1.4E-19 144.7 11.6 116 81-199 17-162 (842)
196 3p32_A Probable GTPase RV1496/ 99.5 8.1E-15 2.8E-19 129.6 8.4 106 132-250 172-284 (355)
197 2dby_A GTP-binding protein; GD 99.5 2E-14 7E-19 127.1 10.0 156 84-243 2-255 (368)
198 2qpt_A EH domain-containing pr 99.5 3.9E-14 1.3E-18 131.8 8.4 113 82-199 64-230 (550)
199 2www_A Methylmalonic aciduria 99.5 3.6E-14 1.2E-18 125.1 5.9 102 132-249 167-278 (349)
200 2yv5_A YJEQ protein; hydrolase 99.4 3.9E-13 1.3E-17 116.2 10.9 97 142-245 66-164 (302)
201 1yrb_A ATP(GTP)binding protein 99.4 2.8E-12 9.4E-17 108.1 13.2 114 132-250 109-257 (262)
202 2p67_A LAO/AO transport system 99.4 4.4E-13 1.5E-17 117.8 7.2 105 132-249 149-260 (341)
203 3vqt_A RF-3, peptide chain rel 99.4 5.1E-12 1.7E-16 117.5 13.3 116 82-200 30-165 (548)
204 2ohf_A Protein OLA1, GTP-bindi 99.3 3.5E-12 1.2E-16 113.4 5.9 89 83-171 22-132 (396)
205 4a9a_A Ribosome-interacting GT 99.3 5.1E-11 1.7E-15 105.4 12.7 113 83-199 72-194 (376)
206 3zvr_A Dynamin-1; hydrolase, D 99.2 5.2E-12 1.8E-16 120.5 6.1 158 81-247 49-275 (772)
207 3j25_A Tetracycline resistance 99.2 6.4E-12 2.2E-16 119.0 4.5 113 85-200 4-132 (638)
208 3l82_B F-box only protein 4; T 99.2 6.6E-12 2.3E-16 101.4 3.4 106 139-252 109-225 (227)
209 2qm8_A GTPase/ATPase; G protei 99.2 2.6E-10 8.9E-15 99.9 13.3 103 132-249 148-260 (337)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 4.2E-10 1.4E-14 100.1 13.7 85 83-167 20-127 (392)
211 4fn5_A EF-G 1, elongation fact 99.2 6.6E-10 2.3E-14 106.4 16.0 115 82-199 12-149 (709)
212 3h2y_A GTPase family protein; 99.1 2.5E-10 8.5E-15 101.2 8.6 100 141-248 55-158 (368)
213 3l2o_B F-box only protein 4; s 99.1 1E-10 3.5E-15 98.9 5.1 106 139-252 194-310 (312)
214 3ec1_A YQEH GTPase; atnos1, at 99.0 8.6E-10 2.9E-14 97.7 6.8 101 141-249 57-161 (369)
215 2qag_B Septin-6, protein NEDD5 98.7 5.3E-08 1.8E-12 87.3 8.7 143 83-232 42-218 (427)
216 3sop_A Neuronal-specific septi 98.6 1.1E-07 3.6E-12 80.7 8.0 139 83-228 2-178 (270)
217 2j37_W Signal recognition part 98.5 1.7E-07 5.7E-12 86.0 7.2 150 83-247 101-310 (504)
218 3ec1_A YQEH GTPase; atnos1, at 98.5 1.2E-08 4E-13 90.5 -0.7 137 84-235 163-316 (369)
219 1tq4_A IIGP1, interferon-induc 98.4 2.1E-06 7E-11 76.9 12.7 162 84-253 70-256 (413)
220 3h2y_A GTPase family protein; 98.4 1.1E-08 3.9E-13 90.5 -2.1 134 84-230 161-310 (368)
221 1puj_A YLQF, conserved hypothe 98.4 4.4E-07 1.5E-11 77.3 6.9 101 136-250 3-106 (282)
222 3cnl_A YLQF, putative uncharac 98.3 2.1E-07 7.1E-12 78.5 3.1 57 84-144 100-156 (262)
223 1puj_A YLQF, conserved hypothe 98.2 1.1E-06 3.9E-11 74.7 5.2 57 82-143 119-176 (282)
224 1bif_A 6-phosphofructo-2-kinas 98.2 2.1E-08 7.1E-13 91.6 -6.5 101 83-185 39-149 (469)
225 2v3c_C SRP54, signal recogniti 98.0 1.5E-06 5.1E-11 78.3 1.4 83 132-229 181-271 (432)
226 3dm5_A SRP54, signal recogniti 98.0 6.1E-06 2.1E-10 74.3 5.2 92 132-240 183-281 (443)
227 1t9h_A YLOQ, probable GTPase E 97.9 1E-05 3.5E-10 69.5 4.5 92 146-242 77-169 (307)
228 3cnl_A YLQF, putative uncharac 97.8 1.7E-05 5.8E-10 66.7 4.3 91 139-246 4-97 (262)
229 1f5n_A Interferon-induced guan 97.8 3.5E-05 1.2E-09 71.9 6.7 64 81-144 36-103 (592)
230 1j8m_F SRP54, signal recogniti 97.7 4.7E-05 1.6E-09 65.2 6.1 92 132-240 181-281 (297)
231 3kl4_A SRP54, signal recogniti 97.7 1.9E-05 6.4E-10 71.0 3.6 92 131-238 179-278 (433)
232 2rcn_A Probable GTPase ENGC; Y 97.5 0.00053 1.8E-08 60.0 10.1 86 151-243 126-212 (358)
233 3e70_C DPA, signal recognition 97.2 0.00017 5.7E-09 62.6 3.7 91 134-240 214-310 (328)
234 3szr_A Interferon-induced GTP- 97.1 0.00053 1.8E-08 64.4 6.1 23 85-107 47-69 (608)
235 3q5d_A Atlastin-1; G protein, 96.9 0.00076 2.6E-08 60.8 5.0 64 81-144 65-152 (447)
236 1ye8_A Protein THEP1, hypothet 96.7 0.00088 3E-08 52.7 2.9 23 84-106 1-23 (178)
237 2xxa_A Signal recognition part 96.6 0.0026 8.7E-08 57.2 5.5 63 131-199 183-252 (433)
238 1kgd_A CASK, peripheral plasma 96.4 0.0014 4.8E-08 51.4 2.7 22 85-106 7-28 (180)
239 1lvg_A Guanylate kinase, GMP k 96.3 0.0018 6.1E-08 51.7 2.7 21 85-105 6-26 (198)
240 1zp6_A Hypothetical protein AT 96.2 0.0026 9E-08 49.9 2.9 23 84-106 10-32 (191)
241 3a00_A Guanylate kinase, GMP k 96.1 0.0025 8.5E-08 50.2 2.6 21 86-106 4-24 (186)
242 3tr0_A Guanylate kinase, GMP k 96.1 0.0026 9E-08 50.5 2.7 22 85-106 9-30 (205)
243 1znw_A Guanylate kinase, GMP k 96.1 0.0027 9.3E-08 50.9 2.7 22 85-106 22-43 (207)
244 4gp7_A Metallophosphoesterase; 96.1 0.0027 9.3E-08 49.3 2.6 20 85-104 11-30 (171)
245 3ney_A 55 kDa erythrocyte memb 96.1 0.0028 9.7E-08 50.7 2.7 24 83-106 19-42 (197)
246 1s96_A Guanylate kinase, GMP k 96.1 0.0028 9.6E-08 51.5 2.7 23 84-106 17-39 (219)
247 1z6g_A Guanylate kinase; struc 96.0 0.0031 1.1E-07 51.1 2.7 22 85-106 25-46 (218)
248 1ex7_A Guanylate kinase; subst 96.0 0.0037 1.3E-07 49.5 3.0 21 86-106 4-24 (186)
249 3tau_A Guanylate kinase, GMP k 95.9 0.0039 1.3E-07 50.0 2.7 22 85-106 10-31 (208)
250 2rcn_A Probable GTPase ENGC; Y 95.8 0.0045 1.6E-07 54.1 3.1 23 85-107 217-239 (358)
251 1htw_A HI0065; nucleotide-bind 95.8 0.0044 1.5E-07 47.7 2.7 23 85-107 35-57 (158)
252 3c8u_A Fructokinase; YP_612366 95.8 0.0038 1.3E-07 50.0 2.4 24 83-106 22-45 (208)
253 2chg_A Replication factor C sm 95.8 0.0061 2.1E-07 48.4 3.6 21 86-106 41-61 (226)
254 3tif_A Uncharacterized ABC tra 95.8 0.0047 1.6E-07 50.7 2.9 22 85-106 33-54 (235)
255 1kag_A SKI, shikimate kinase I 95.7 0.0052 1.8E-07 47.3 2.7 23 84-106 5-27 (173)
256 2qor_A Guanylate kinase; phosp 95.7 0.0057 1.9E-07 48.8 3.0 23 84-106 13-35 (204)
257 2pcj_A ABC transporter, lipopr 95.7 0.0053 1.8E-07 50.0 2.8 22 85-106 32-53 (224)
258 3kb2_A SPBC2 prophage-derived 95.7 0.0059 2E-07 46.8 2.9 21 85-105 3-23 (173)
259 2onk_A Molybdate/tungstate ABC 95.6 0.0063 2.2E-07 50.2 3.1 22 85-106 26-47 (240)
260 2bdt_A BH3686; alpha-beta prot 95.6 0.0056 1.9E-07 48.0 2.7 21 85-105 4-24 (189)
261 2j41_A Guanylate kinase; GMP, 95.6 0.0055 1.9E-07 48.6 2.7 24 84-107 7-30 (207)
262 2i3b_A HCR-ntpase, human cance 95.6 0.0051 1.8E-07 48.8 2.4 22 85-106 3-24 (189)
263 3lw7_A Adenylate kinase relate 95.6 0.0064 2.2E-07 46.5 2.9 20 84-103 2-21 (179)
264 2bbw_A Adenylate kinase 4, AK4 95.6 0.0072 2.5E-07 49.7 3.4 21 84-104 28-48 (246)
265 4eun_A Thermoresistant glucoki 95.6 0.006 2.1E-07 48.5 2.7 22 84-105 30-51 (200)
266 1ly1_A Polynucleotide kinase; 95.6 0.007 2.4E-07 46.7 3.0 22 84-105 3-24 (181)
267 1b0u_A Histidine permease; ABC 95.6 0.0065 2.2E-07 50.7 3.0 22 85-106 34-55 (262)
268 1sgw_A Putative ABC transporte 95.5 0.0069 2.3E-07 49.0 3.0 22 85-106 37-58 (214)
269 2cbz_A Multidrug resistance-as 95.5 0.0072 2.5E-07 49.7 3.1 22 85-106 33-54 (237)
270 3fb4_A Adenylate kinase; psych 95.5 0.0069 2.3E-07 48.6 3.0 22 84-105 1-22 (216)
271 3asz_A Uridine kinase; cytidin 95.5 0.0073 2.5E-07 48.2 3.0 23 83-105 6-28 (211)
272 3dl0_A Adenylate kinase; phosp 95.5 0.0075 2.6E-07 48.4 3.1 22 84-105 1-22 (216)
273 1t9h_A YLOQ, probable GTPase E 95.5 0.003 1E-07 54.1 0.7 23 84-106 174-196 (307)
274 1mv5_A LMRA, multidrug resista 95.5 0.0077 2.6E-07 49.7 3.2 22 85-106 30-51 (243)
275 2ff7_A Alpha-hemolysin translo 95.5 0.0076 2.6E-07 49.9 3.1 22 85-106 37-58 (247)
276 3gfo_A Cobalt import ATP-bindi 95.5 0.0072 2.4E-07 50.9 3.0 22 85-106 36-57 (275)
277 3ec2_A DNA replication protein 95.5 0.0058 2E-07 47.6 2.2 23 84-106 39-61 (180)
278 1g6h_A High-affinity branched- 95.5 0.0072 2.5E-07 50.3 2.9 22 85-106 35-56 (257)
279 3co5_A Putative two-component 95.4 0.02 6.9E-07 42.8 5.1 22 85-106 29-50 (143)
280 1u0l_A Probable GTPase ENGC; p 95.4 0.0069 2.4E-07 51.6 2.8 23 85-107 171-193 (301)
281 2olj_A Amino acid ABC transpor 95.4 0.0077 2.6E-07 50.4 3.0 22 85-106 52-73 (263)
282 4g1u_C Hemin import ATP-bindin 95.4 0.0077 2.6E-07 50.4 3.0 22 85-106 39-60 (266)
283 2pze_A Cystic fibrosis transme 95.4 0.0087 3E-07 48.9 3.2 22 85-106 36-57 (229)
284 1np6_A Molybdopterin-guanine d 95.4 0.0076 2.6E-07 47.1 2.7 23 84-106 7-29 (174)
285 4ido_A Atlastin-1; GTPase, GTP 95.4 0.025 8.5E-07 50.9 6.4 63 82-144 66-152 (457)
286 3t61_A Gluconokinase; PSI-biol 95.4 0.0074 2.5E-07 47.9 2.7 22 84-105 19-40 (202)
287 3vaa_A Shikimate kinase, SK; s 95.4 0.0084 2.9E-07 47.6 3.0 22 84-105 26-47 (199)
288 1ji0_A ABC transporter; ATP bi 95.4 0.008 2.7E-07 49.5 2.9 22 85-106 34-55 (240)
289 1qhx_A CPT, protein (chloramph 95.4 0.0084 2.9E-07 46.4 2.9 22 84-105 4-25 (178)
290 2jaq_A Deoxyguanosine kinase; 95.4 0.0081 2.8E-07 47.4 2.8 21 85-105 2-22 (205)
291 2qi9_C Vitamin B12 import ATP- 95.4 0.0082 2.8E-07 49.8 3.0 22 85-106 28-49 (249)
292 2d2e_A SUFC protein; ABC-ATPas 95.4 0.0086 2.9E-07 49.6 3.1 22 85-106 31-52 (250)
293 2zu0_C Probable ATP-dependent 95.4 0.0088 3E-07 50.1 3.1 22 85-106 48-69 (267)
294 1knq_A Gluconate kinase; ALFA/ 95.4 0.01 3.6E-07 45.8 3.4 22 84-105 9-30 (175)
295 1vpl_A ABC transporter, ATP-bi 95.3 0.0085 2.9E-07 49.9 3.0 22 85-106 43-64 (256)
296 2if2_A Dephospho-COA kinase; a 95.3 0.0079 2.7E-07 47.7 2.7 22 84-105 2-23 (204)
297 2ihy_A ABC transporter, ATP-bi 95.3 0.0094 3.2E-07 50.3 3.2 22 85-106 49-70 (279)
298 2ghi_A Transport protein; mult 95.3 0.0093 3.2E-07 49.7 3.1 22 85-106 48-69 (260)
299 1nks_A Adenylate kinase; therm 95.3 0.011 3.6E-07 46.2 3.3 21 85-105 3-23 (194)
300 1kht_A Adenylate kinase; phosp 95.3 0.01 3.5E-07 46.3 3.1 22 84-105 4-25 (192)
301 1lw7_A Transcriptional regulat 95.3 0.0088 3E-07 52.3 3.0 24 83-106 170-193 (365)
302 2ixe_A Antigen peptide transpo 95.3 0.0097 3.3E-07 49.9 3.1 22 85-106 47-68 (271)
303 2yv5_A YJEQ protein; hydrolase 95.3 0.009 3.1E-07 50.9 3.0 21 84-104 166-186 (302)
304 2cdn_A Adenylate kinase; phosp 95.3 0.012 4.1E-07 46.6 3.5 24 82-105 19-42 (201)
305 2ehv_A Hypothetical protein PH 95.3 0.0097 3.3E-07 48.6 3.0 20 85-104 32-51 (251)
306 2f1r_A Molybdopterin-guanine d 95.3 0.0055 1.9E-07 47.8 1.4 22 85-106 4-25 (171)
307 4a74_A DNA repair and recombin 95.2 0.0083 2.9E-07 48.3 2.5 22 85-106 27-48 (231)
308 2eyu_A Twitching motility prot 95.2 0.0091 3.1E-07 49.8 2.7 22 84-105 26-47 (261)
309 2v9p_A Replication protein E1; 95.2 0.0095 3.3E-07 50.9 2.9 22 84-105 127-148 (305)
310 3cm0_A Adenylate kinase; ATP-b 95.2 0.014 4.7E-07 45.5 3.6 23 83-105 4-26 (186)
311 2nq2_C Hypothetical ABC transp 95.2 0.0099 3.4E-07 49.4 2.9 22 85-106 33-54 (253)
312 3uie_A Adenylyl-sulfate kinase 95.2 0.0095 3.2E-07 47.3 2.7 23 84-106 26-48 (200)
313 2yz2_A Putative ABC transporte 95.2 0.01 3.4E-07 49.7 2.9 22 85-106 35-56 (266)
314 3lnc_A Guanylate kinase, GMP k 95.2 0.0068 2.3E-07 49.3 1.8 22 85-106 29-51 (231)
315 2pjz_A Hypothetical protein ST 95.2 0.012 3.9E-07 49.3 3.2 22 85-106 32-53 (263)
316 3b85_A Phosphate starvation-in 95.1 0.0076 2.6E-07 48.6 1.9 22 85-106 24-45 (208)
317 1jbk_A CLPB protein; beta barr 95.1 0.01 3.6E-07 45.8 2.7 22 85-106 45-66 (195)
318 1cke_A CK, MSSA, protein (cyti 95.1 0.011 3.9E-07 47.5 3.0 22 84-105 6-27 (227)
319 2plr_A DTMP kinase, probable t 95.1 0.015 5.1E-07 46.1 3.6 22 84-105 5-26 (213)
320 1e4v_A Adenylate kinase; trans 95.1 0.011 3.9E-07 47.3 2.9 22 84-105 1-22 (214)
321 1tev_A UMP-CMP kinase; ploop, 95.1 0.015 5E-07 45.4 3.5 23 83-105 3-25 (196)
322 3sr0_A Adenylate kinase; phosp 95.1 0.012 4.2E-07 47.2 3.1 22 84-105 1-22 (206)
323 1jjv_A Dephospho-COA kinase; P 95.1 0.015 5E-07 46.3 3.5 22 84-105 3-24 (206)
324 1sxj_E Activator 1 40 kDa subu 95.0 0.04 1.4E-06 47.5 6.5 20 86-105 39-58 (354)
325 2rhm_A Putative kinase; P-loop 95.0 0.015 5.1E-07 45.5 3.4 22 84-105 6-27 (193)
326 3trf_A Shikimate kinase, SK; a 95.0 0.014 4.6E-07 45.5 3.1 22 84-105 6-27 (185)
327 3nh6_A ATP-binding cassette SU 95.0 0.01 3.5E-07 50.8 2.5 21 85-105 82-102 (306)
328 3aez_A Pantothenate kinase; tr 94.9 0.012 4.1E-07 50.5 2.7 23 83-105 90-112 (312)
329 1y63_A LMAJ004144AAA protein; 94.9 0.016 5.6E-07 45.3 3.3 24 83-106 10-33 (184)
330 3fvq_A Fe(3+) IONS import ATP- 94.9 0.013 4.4E-07 51.2 2.9 23 85-107 32-54 (359)
331 1zcb_A G alpha I/13; GTP-bindi 94.9 0.016 5.4E-07 50.8 3.5 24 80-103 30-53 (362)
332 2bbs_A Cystic fibrosis transme 94.9 0.014 4.7E-07 49.5 3.0 22 85-106 66-87 (290)
333 2pt5_A Shikimate kinase, SK; a 94.9 0.015 5.2E-07 44.4 3.0 21 85-105 2-22 (168)
334 1aky_A Adenylate kinase; ATP:A 94.9 0.016 5.5E-07 46.6 3.2 22 84-105 5-26 (220)
335 2qt1_A Nicotinamide riboside k 94.9 0.021 7.3E-07 45.4 3.9 24 83-106 21-44 (207)
336 3tlx_A Adenylate kinase 2; str 94.9 0.018 6.2E-07 47.3 3.5 23 83-105 29-51 (243)
337 1z47_A CYSA, putative ABC-tran 94.8 0.015 5E-07 50.8 3.1 22 85-106 43-64 (355)
338 1ixz_A ATP-dependent metallopr 94.8 0.014 4.8E-07 48.0 2.7 21 86-106 52-72 (254)
339 2kjq_A DNAA-related protein; s 94.8 0.0093 3.2E-07 45.3 1.5 22 85-106 38-59 (149)
340 2yyz_A Sugar ABC transporter, 94.8 0.016 5.4E-07 50.7 3.1 22 85-106 31-52 (359)
341 2it1_A 362AA long hypothetical 94.8 0.016 5.5E-07 50.7 3.1 22 85-106 31-52 (362)
342 2wwf_A Thymidilate kinase, put 94.7 0.022 7.7E-07 45.2 3.8 23 83-105 10-32 (212)
343 3rlf_A Maltose/maltodextrin im 94.7 0.017 5.7E-07 51.0 3.1 23 85-107 31-53 (381)
344 2x8a_A Nuclear valosin-contain 94.7 0.015 5E-07 48.9 2.7 21 86-106 47-67 (274)
345 1via_A Shikimate kinase; struc 94.7 0.016 5.3E-07 44.8 2.7 21 85-105 6-26 (175)
346 1zd8_A GTP:AMP phosphotransfer 94.7 0.017 5.9E-07 46.7 3.0 22 84-105 8-29 (227)
347 3iij_A Coilin-interacting nucl 94.7 0.018 6.2E-07 44.6 3.0 22 84-105 12-33 (180)
348 3be4_A Adenylate kinase; malar 94.7 0.018 6.1E-07 46.3 3.0 23 83-105 5-27 (217)
349 1g29_1 MALK, maltose transport 94.7 0.017 5.8E-07 50.8 3.1 22 85-106 31-52 (372)
350 1v43_A Sugar-binding transport 94.6 0.018 6E-07 50.7 3.1 22 85-106 39-60 (372)
351 1ukz_A Uridylate kinase; trans 94.6 0.029 9.8E-07 44.3 4.1 22 84-105 16-37 (203)
352 2xb4_A Adenylate kinase; ATP-b 94.6 0.019 6.6E-07 46.4 3.1 21 85-105 2-22 (223)
353 3tui_C Methionine import ATP-b 94.6 0.018 6.2E-07 50.4 3.1 22 85-106 56-77 (366)
354 3d31_A Sulfate/molybdate ABC t 94.6 0.015 5E-07 50.7 2.5 22 85-106 28-49 (348)
355 1xjc_A MOBB protein homolog; s 94.6 0.02 6.9E-07 44.5 3.0 21 85-105 6-26 (169)
356 2v54_A DTMP kinase, thymidylat 94.6 0.021 7.2E-07 45.0 3.2 23 84-106 5-27 (204)
357 1rj9_A FTSY, signal recognitio 94.6 0.017 5.7E-07 49.4 2.7 90 134-239 187-288 (304)
358 2w0m_A SSO2452; RECA, SSPF, un 94.5 0.018 6E-07 46.3 2.7 22 85-106 25-46 (235)
359 2yvu_A Probable adenylyl-sulfa 94.5 0.025 8.4E-07 44.1 3.5 23 83-105 13-35 (186)
360 2jeo_A Uridine-cytidine kinase 94.5 0.022 7.4E-07 46.8 3.3 23 83-105 25-47 (245)
361 2pbr_A DTMP kinase, thymidylat 94.4 0.023 7.8E-07 44.3 3.1 21 85-105 2-22 (195)
362 1gvn_B Zeta; postsegregational 94.4 0.023 8E-07 48.0 3.3 22 84-105 34-55 (287)
363 2p65_A Hypothetical protein PF 94.4 0.016 5.4E-07 44.6 2.1 23 84-106 44-66 (187)
364 3b9q_A Chloroplast SRP recepto 94.4 0.019 6.5E-07 48.9 2.7 22 84-105 101-122 (302)
365 3umf_A Adenylate kinase; rossm 94.4 0.026 9E-07 45.7 3.4 24 82-105 27-51 (217)
366 1odf_A YGR205W, hypothetical 3 94.4 0.026 9.1E-07 47.8 3.5 23 83-105 31-53 (290)
367 1qf9_A UMP/CMP kinase, protein 94.4 0.03 1E-06 43.5 3.7 22 84-105 7-28 (194)
368 1gtv_A TMK, thymidylate kinase 94.4 0.0098 3.4E-07 47.4 0.8 21 85-105 2-22 (214)
369 3uc9_A Increased recombination 94.4 0.17 5.8E-06 41.2 8.1 24 83-106 27-52 (233)
370 2vli_A Antibiotic resistance p 94.4 0.016 5.3E-07 45.0 1.9 22 84-105 6-27 (183)
371 1iy2_A ATP-dependent metallopr 94.3 0.02 7E-07 47.8 2.7 21 86-106 76-96 (278)
372 3jvv_A Twitching mobility prot 94.3 0.019 6.7E-07 50.1 2.7 21 85-105 125-145 (356)
373 2z0h_A DTMP kinase, thymidylat 94.3 0.025 8.4E-07 44.3 3.1 21 85-105 2-22 (197)
374 3bos_A Putative DNA replicatio 94.3 0.021 7.2E-07 46.0 2.7 23 84-106 53-75 (242)
375 1rz3_A Hypothetical protein rb 94.3 0.028 9.4E-07 44.6 3.3 23 83-105 22-44 (201)
376 2ze6_A Isopentenyl transferase 94.3 0.021 7.3E-07 47.2 2.7 21 85-105 3-23 (253)
377 2c95_A Adenylate kinase 1; tra 94.3 0.023 8E-07 44.4 2.8 22 84-105 10-31 (196)
378 1uf9_A TT1252 protein; P-loop, 94.3 0.029 1E-06 44.1 3.4 24 83-106 8-31 (203)
379 3gd7_A Fusion complex of cysti 94.3 0.022 7.5E-07 50.4 2.9 22 85-106 49-70 (390)
380 1oxx_K GLCV, glucose, ABC tran 94.2 0.015 5.1E-07 50.8 1.7 22 85-106 33-54 (353)
381 1nn5_A Similar to deoxythymidy 94.2 0.026 8.8E-07 44.9 3.0 22 84-105 10-31 (215)
382 1e6c_A Shikimate kinase; phosp 94.2 0.025 8.7E-07 43.3 2.9 21 85-105 4-24 (173)
383 2gza_A Type IV secretion syste 94.2 0.022 7.5E-07 49.8 2.8 23 84-106 176-198 (361)
384 1in4_A RUVB, holliday junction 94.2 0.021 7.3E-07 49.2 2.7 22 85-106 53-74 (334)
385 1zak_A Adenylate kinase; ATP:A 94.2 0.024 8.1E-07 45.7 2.8 22 84-105 6-27 (222)
386 3a4m_A L-seryl-tRNA(SEC) kinas 94.2 0.026 8.7E-07 46.9 3.0 22 84-105 5-26 (260)
387 2pt7_A CAG-ALFA; ATPase, prote 94.2 0.022 7.4E-07 49.2 2.6 22 85-106 173-194 (330)
388 2bwj_A Adenylate kinase 5; pho 94.2 0.028 9.5E-07 44.1 3.1 22 84-105 13-34 (199)
389 2w58_A DNAI, primosome compone 94.2 0.024 8.3E-07 44.7 2.7 23 84-106 55-77 (202)
390 1cr0_A DNA primase/helicase; R 94.1 0.022 7.5E-07 48.1 2.5 22 85-106 37-58 (296)
391 3kta_A Chromosome segregation 94.1 0.027 9.3E-07 43.6 2.8 21 85-105 28-48 (182)
392 1sq5_A Pantothenate kinase; P- 94.1 0.03 1E-06 47.8 3.3 23 83-105 80-102 (308)
393 1lv7_A FTSH; alpha/beta domain 94.1 0.025 8.5E-07 46.6 2.7 22 85-106 47-68 (257)
394 4e22_A Cytidylate kinase; P-lo 94.1 0.032 1.1E-06 46.0 3.4 21 84-104 28-48 (252)
395 1ak2_A Adenylate kinase isoenz 94.1 0.032 1.1E-06 45.3 3.3 22 84-105 17-38 (233)
396 2cvh_A DNA repair and recombin 94.1 0.026 8.9E-07 45.0 2.7 21 85-105 22-42 (220)
397 2ewv_A Twitching motility prot 94.0 0.024 8.2E-07 49.8 2.6 22 84-105 137-158 (372)
398 2iyv_A Shikimate kinase, SK; t 94.0 0.029 9.9E-07 43.6 2.8 21 85-105 4-24 (184)
399 2pez_A Bifunctional 3'-phospho 94.0 0.034 1.2E-06 43.0 3.3 22 84-105 6-27 (179)
400 1n0w_A DNA repair protein RAD5 94.0 0.027 9.3E-07 45.6 2.7 22 85-106 26-47 (243)
401 1njg_A DNA polymerase III subu 94.0 0.027 9.2E-07 45.1 2.7 21 85-105 47-67 (250)
402 3tqc_A Pantothenate kinase; bi 94.0 0.037 1.3E-06 47.6 3.6 23 83-105 92-114 (321)
403 2obl_A ESCN; ATPase, hydrolase 94.0 0.027 9.3E-07 49.0 2.8 23 85-107 73-95 (347)
404 2p5t_B PEZT; postsegregational 93.9 0.026 8.8E-07 46.6 2.5 22 84-105 33-54 (253)
405 2vp4_A Deoxynucleoside kinase; 93.9 0.032 1.1E-06 45.3 3.0 24 83-106 20-43 (230)
406 1uj2_A Uridine-cytidine kinase 93.8 0.039 1.3E-06 45.4 3.4 24 82-105 21-44 (252)
407 3n70_A Transport activator; si 93.8 0.035 1.2E-06 41.5 2.9 23 84-106 25-47 (145)
408 2og2_A Putative signal recogni 93.8 0.03 1E-06 48.9 2.7 22 84-105 158-179 (359)
409 2yhs_A FTSY, cell division pro 93.7 0.03 1E-06 50.9 2.7 91 133-240 377-480 (503)
410 1vht_A Dephospho-COA kinase; s 93.7 0.043 1.5E-06 43.9 3.4 22 84-105 5-26 (218)
411 1m7g_A Adenylylsulfate kinase; 93.7 0.033 1.1E-06 44.4 2.7 22 84-105 26-47 (211)
412 1p9r_A General secretion pathw 93.6 0.033 1.1E-06 49.7 2.7 22 85-106 169-190 (418)
413 4eaq_A DTMP kinase, thymidylat 93.6 0.036 1.2E-06 45.1 2.7 24 83-106 26-49 (229)
414 2npi_A Protein CLP1; CLP1-PCF1 93.5 0.031 1.1E-06 50.5 2.5 22 85-106 140-161 (460)
415 1nij_A Hypothetical protein YJ 93.5 0.024 8.2E-07 48.6 1.7 22 85-106 6-27 (318)
416 1zuh_A Shikimate kinase; alpha 93.5 0.043 1.5E-06 41.9 2.9 21 85-105 9-29 (168)
417 3h4m_A Proteasome-activating n 93.4 0.036 1.2E-06 46.2 2.6 22 85-106 53-74 (285)
418 2qz4_A Paraplegin; AAA+, SPG7, 93.4 0.039 1.3E-06 45.3 2.8 21 85-105 41-61 (262)
419 2oap_1 GSPE-2, type II secreti 93.4 0.037 1.3E-06 50.7 2.8 22 85-106 262-283 (511)
420 2dpy_A FLII, flagellum-specifi 93.4 0.038 1.3E-06 49.6 2.8 23 85-107 159-181 (438)
421 1azs_C GS-alpha; complex (lyas 93.4 0.05 1.7E-06 48.2 3.5 24 80-103 37-60 (402)
422 3nwj_A ATSK2; P loop, shikimat 93.4 0.04 1.4E-06 45.6 2.7 22 84-105 49-70 (250)
423 3b9p_A CG5977-PA, isoform A; A 93.3 0.039 1.3E-06 46.4 2.6 23 84-106 55-77 (297)
424 3r20_A Cytidylate kinase; stru 93.3 0.049 1.7E-06 44.6 3.0 23 83-105 9-31 (233)
425 1yqt_A RNAse L inhibitor; ATP- 93.2 0.05 1.7E-06 50.2 3.4 23 84-106 48-70 (538)
426 3ea0_A ATPase, para family; al 93.2 0.67 2.3E-05 37.2 10.0 86 132-230 119-205 (245)
427 1ltq_A Polynucleotide kinase; 93.2 0.048 1.6E-06 45.9 3.0 22 84-105 3-24 (301)
428 4dzz_A Plasmid partitioning pr 93.2 0.18 6E-06 39.6 6.2 84 132-227 76-162 (206)
429 1l8q_A Chromosomal replication 93.1 0.043 1.5E-06 46.8 2.6 22 85-106 39-60 (324)
430 2qby_A CDC6 homolog 1, cell di 93.1 0.042 1.4E-06 47.6 2.6 22 85-106 47-68 (386)
431 1f2t_A RAD50 ABC-ATPase; DNA d 93.1 0.058 2E-06 40.7 3.0 19 86-104 26-44 (149)
432 1nlf_A Regulatory protein REPA 93.0 0.044 1.5E-06 45.8 2.5 21 85-105 32-52 (279)
433 3t15_A Ribulose bisphosphate c 93.0 0.045 1.5E-06 46.3 2.5 23 84-106 37-59 (293)
434 3b60_A Lipid A export ATP-bind 93.0 0.049 1.7E-06 50.7 3.0 22 85-106 371-392 (582)
435 2dr3_A UPF0273 protein PH0284; 93.0 0.053 1.8E-06 43.9 2.8 21 85-105 25-45 (247)
436 3cf0_A Transitional endoplasmi 92.9 0.049 1.7E-06 46.2 2.6 22 85-106 51-72 (301)
437 2f6r_A COA synthase, bifunctio 92.9 0.062 2.1E-06 45.1 3.3 22 83-104 75-96 (281)
438 3b5x_A Lipid A export ATP-bind 92.9 0.056 1.9E-06 50.3 3.2 22 85-106 371-392 (582)
439 1q3t_A Cytidylate kinase; nucl 92.9 0.057 1.9E-06 43.9 2.9 26 80-105 13-38 (236)
440 3syl_A Protein CBBX; photosynt 92.8 0.049 1.7E-06 45.9 2.6 22 84-105 68-89 (309)
441 1ofh_A ATP-dependent HSL prote 92.8 0.054 1.8E-06 45.5 2.7 21 85-105 52-72 (310)
442 3euj_A Chromosome partition pr 92.8 0.052 1.8E-06 49.3 2.7 21 85-105 31-51 (483)
443 2qen_A Walker-type ATPase; unk 92.7 0.054 1.9E-06 46.2 2.7 22 85-106 33-54 (350)
444 1svm_A Large T antigen; AAA+ f 92.7 0.053 1.8E-06 47.7 2.7 22 84-105 170-191 (377)
445 2grj_A Dephospho-COA kinase; T 92.7 0.08 2.7E-06 41.9 3.5 24 82-105 11-34 (192)
446 1fnn_A CDC6P, cell division co 92.7 0.056 1.9E-06 46.9 2.7 22 85-106 46-67 (389)
447 1d2n_A N-ethylmaleimide-sensit 92.6 0.059 2E-06 44.7 2.7 24 83-106 64-87 (272)
448 3ozx_A RNAse L inhibitor; ATP 92.6 0.061 2.1E-06 49.6 3.0 22 85-106 27-48 (538)
449 2qmh_A HPR kinase/phosphorylas 92.5 0.07 2.4E-06 42.6 2.8 24 83-106 34-57 (205)
450 2fna_A Conserved hypothetical 92.5 0.056 1.9E-06 46.2 2.5 22 85-106 32-53 (357)
451 2px0_A Flagellar biosynthesis 92.4 0.06 2.1E-06 45.7 2.5 90 132-237 183-278 (296)
452 3cwq_A Para family chromosome 92.4 0.75 2.6E-05 36.4 9.0 85 132-227 68-153 (209)
453 3j16_B RLI1P; ribosome recycli 92.4 0.07 2.4E-06 50.0 3.1 22 85-106 105-126 (608)
454 3u61_B DNA polymerase accessor 92.3 0.23 7.9E-06 42.1 6.2 21 86-106 51-71 (324)
455 4fcw_A Chaperone protein CLPB; 92.3 0.068 2.3E-06 45.0 2.7 23 84-106 48-70 (311)
456 1p5z_B DCK, deoxycytidine kina 92.2 0.058 2E-06 44.6 2.1 23 83-105 24-46 (263)
457 1tue_A Replication protein E1; 92.2 0.054 1.8E-06 43.5 1.8 21 85-105 60-80 (212)
458 2yl4_A ATP-binding cassette SU 92.1 0.052 1.8E-06 50.7 2.0 22 85-106 372-393 (595)
459 3bk7_A ABC transporter ATP-bin 92.1 0.08 2.7E-06 49.6 3.2 22 85-106 119-140 (607)
460 3qf7_A RAD50; ABC-ATPase, ATPa 92.1 0.08 2.7E-06 46.3 3.0 19 86-104 26-44 (365)
461 1xwi_A SKD1 protein; VPS4B, AA 92.1 0.071 2.4E-06 45.7 2.6 22 85-106 47-68 (322)
462 1yqt_A RNAse L inhibitor; ATP- 92.1 0.087 3E-06 48.6 3.4 23 85-107 314-336 (538)
463 2v1u_A Cell division control p 92.0 0.064 2.2E-06 46.4 2.3 23 84-106 45-67 (387)
464 3qf4_B Uncharacterized ABC tra 92.0 0.059 2E-06 50.4 2.2 22 85-106 383-404 (598)
465 3ozx_A RNAse L inhibitor; ATP 92.0 0.078 2.7E-06 48.9 3.0 22 85-106 296-317 (538)
466 1vma_A Cell division protein F 92.0 0.078 2.7E-06 45.2 2.7 92 132-239 187-290 (306)
467 1sxj_C Activator 1 40 kDa subu 92.0 0.075 2.6E-06 45.7 2.6 21 86-106 49-69 (340)
468 1sxj_D Activator 1 41 kDa subu 91.9 0.077 2.6E-06 45.5 2.7 21 86-106 61-81 (353)
469 3ake_A Cytidylate kinase; CMP 91.9 0.082 2.8E-06 41.6 2.7 21 85-105 4-24 (208)
470 4a82_A Cystic fibrosis transme 91.9 0.054 1.8E-06 50.4 1.8 21 85-105 369-389 (578)
471 3zvl_A Bifunctional polynucleo 91.9 0.24 8.2E-06 44.0 5.9 22 84-105 259-280 (416)
472 3eie_A Vacuolar protein sortin 91.9 0.077 2.6E-06 45.3 2.6 23 84-106 52-74 (322)
473 2bjv_A PSP operon transcriptio 91.8 0.094 3.2E-06 43.3 3.0 23 84-106 30-52 (265)
474 3qf4_A ABC transporter, ATP-bi 91.8 0.066 2.3E-06 49.9 2.2 21 85-105 371-391 (587)
475 2r62_A Cell division protease 91.8 0.039 1.3E-06 45.6 0.6 21 86-106 47-67 (268)
476 3bk7_A ABC transporter ATP-bin 91.8 0.098 3.3E-06 49.0 3.4 23 85-107 384-406 (607)
477 3uk6_A RUVB-like 2; hexameric 91.7 0.078 2.7E-06 45.9 2.5 23 84-106 71-93 (368)
478 1pzn_A RAD51, DNA repair and r 91.7 0.079 2.7E-06 46.0 2.5 23 84-106 132-154 (349)
479 3pfi_A Holliday junction ATP-d 91.7 0.089 3E-06 45.0 2.8 22 85-106 57-78 (338)
480 2r8r_A Sensor protein; KDPD, P 91.7 0.13 4.5E-06 41.8 3.6 21 83-103 6-26 (228)
481 2qgz_A Helicase loader, putati 91.6 0.089 3.1E-06 44.8 2.7 22 84-105 153-174 (308)
482 4b4t_K 26S protease regulatory 91.6 0.093 3.2E-06 46.9 2.8 22 85-106 208-229 (428)
483 3a8t_A Adenylate isopentenyltr 91.5 0.11 3.8E-06 44.9 3.2 22 85-106 42-63 (339)
484 3crm_A TRNA delta(2)-isopenten 91.5 0.1 3.5E-06 44.8 3.0 22 84-105 6-27 (323)
485 2qby_B CDC6 homolog 3, cell di 91.5 0.086 2.9E-06 45.8 2.6 22 85-106 47-68 (384)
486 2r44_A Uncharacterized protein 91.5 0.077 2.6E-06 45.4 2.1 21 85-105 48-68 (331)
487 3gmt_A Adenylate kinase; ssgci 91.4 0.12 4.2E-06 42.1 3.1 24 82-105 7-30 (230)
488 3pxg_A Negative regulator of g 91.3 0.1 3.4E-06 47.2 2.8 23 84-106 202-224 (468)
489 3j16_B RLI1P; ribosome recycli 91.3 0.11 3.8E-06 48.6 3.1 22 86-107 381-402 (608)
490 3d3q_A TRNA delta(2)-isopenten 91.2 0.11 3.9E-06 44.8 3.0 22 84-105 8-29 (340)
491 4b4t_M 26S protease regulatory 91.2 0.1 3.5E-06 46.7 2.8 23 84-106 216-238 (434)
492 2z4s_A Chromosomal replication 91.2 0.098 3.4E-06 46.9 2.6 23 84-106 131-153 (440)
493 3qks_A DNA double-strand break 91.2 0.13 4.3E-06 41.0 3.0 20 85-104 25-44 (203)
494 2qp9_X Vacuolar protein sortin 91.1 0.1 3.5E-06 45.3 2.7 22 85-106 86-107 (355)
495 1um8_A ATP-dependent CLP prote 91.1 0.12 4E-06 45.1 3.0 23 84-106 73-95 (376)
496 3d8b_A Fidgetin-like protein 1 91.1 0.11 3.6E-06 45.2 2.7 23 84-106 118-140 (357)
497 3exa_A TRNA delta(2)-isopenten 91.1 0.12 4.2E-06 44.1 3.0 22 85-106 5-26 (322)
498 2ocp_A DGK, deoxyguanosine kin 91.0 0.15 5E-06 41.5 3.4 22 84-105 3-24 (241)
499 3lda_A DNA repair protein RAD5 91.0 0.11 3.9E-06 46.0 2.8 20 85-104 180-199 (400)
500 3m6a_A ATP-dependent protease 91.0 0.1 3.6E-06 48.1 2.6 21 85-105 110-130 (543)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=9.4e-42 Score=282.65 Aligned_cols=168 Identities=22% Similarity=0.413 Sum_probs=140.6
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
+.+.+||+|+|++|||||||++||+.+.|...+.+|+|.++..+.+.+++..+.++||||+|+++|..+++.|+++++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 55679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
++|||+++++||+++..|+..+.......+| ||||||+||. +.+.+..+++++++++++++|+||||++|.||+
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~-----~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~ 164 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA-----DKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG-----GGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH-----hcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHH
Confidence 9999999999999999999999887554455 6999999972 334566899999999999999999999999999
Q ss_pred HHHHHHHHHHhcCc
Q 041042 239 KILKFITAKLFDIP 252 (268)
Q Consensus 239 ~~f~~l~~~i~~~~ 252 (268)
++|+.|++.+....
T Consensus 165 e~F~~i~~~i~~~~ 178 (216)
T 4dkx_A 165 QLFRRVAAALPGME 178 (216)
T ss_dssp HHHHHHHHHC----
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999987654
No 2
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=2e-34 Score=232.62 Aligned_cols=163 Identities=20% Similarity=0.324 Sum_probs=141.1
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+++|++|||||||+++|+++.|...+.+|. .++ .+.+.+++..+.+++|||+|++.|. +++++|++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 5567999999999999999999999999988888874 344 4788899999999999999999876 88899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhC-CeEEEEcCCCCcC
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALN-ATLFFSSATYNIN 236 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 236 (268)
++|||+++.++|+.+..|+..+.... .+.|.+|||||+|+ .....+.+..+++.++++.++ ++|++|||++|.|
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl---~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 90 VFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAI---SAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN 166 (184)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTC---BTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc---ccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence 99999999999999999999998874 34555799999997 222334455888999999997 8999999999999
Q ss_pred HHHHHHHHHHHHhcCc
Q 041042 237 VNKILKFITAKLFDIP 252 (268)
Q Consensus 237 i~~~f~~l~~~i~~~~ 252 (268)
|+++|++|++.+.+.+
T Consensus 167 v~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 167 VERVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887653
No 3
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1.5e-34 Score=238.97 Aligned_cols=177 Identities=24% Similarity=0.289 Sum_probs=146.6
Q ss_pred CCceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 041042 79 DNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIA 158 (268)
Q Consensus 79 ~~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~ 158 (268)
+....+||+|+|++|||||||+++|.++.+...+.+|++.++ .+.+.+++..+.+++|||+|+++|..++..+++++|+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 356679999999999999999999999999999999999876 4677788889999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHH-HHHHHHHHHHhCCCCceEEEEeCCCCCCCCC-------ccchhchHHHHHHHHHHhCC-eEEEE
Q 041042 159 ILFMFDLTSRCTLKS-VIRWYQQARKCNQTAIPIIIGTKFDDFIQLP-------IDLQWTIASQARAYAKALNA-TLFFS 229 (268)
Q Consensus 159 vilv~D~~~~~s~~~-~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~ 229 (268)
+|+|||+++.++|+. +..|+..+....++.|++|||||+|+..... ...+.+..+++..+++.+++ +|++|
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 181 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEG 181 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEe
Confidence 999999999999999 6899999999887767789999999721000 00134558899999999999 99999
Q ss_pred cCCCCcC-HHHHHHHHHHHHhcCccchh
Q 041042 230 SATYNIN-VNKILKFITAKLFDIPWTLE 256 (268)
Q Consensus 230 Sa~~~~~-i~~~f~~l~~~i~~~~~~~~ 256 (268)
||++|.| |+++|++|++.+.+.....+
T Consensus 182 SA~~g~g~v~~lf~~l~~~~~~~~~~~~ 209 (214)
T 3q3j_B 182 SAFTSEKSIHSIFRTASMLCLNKPSPLP 209 (214)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHC------
T ss_pred ccCCCcccHHHHHHHHHHHHhccCcCCC
Confidence 9999998 99999999999988765433
No 4
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=236.41 Aligned_cols=167 Identities=22% Similarity=0.372 Sum_probs=141.2
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|++|||||||+++|.++.+...+.+|++.++..+.+.+++..+.+++|||+|+++|..++..+++++|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 56679999999999999999999999999888899999999888999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCC-CceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCC-eEEEEcCCCCcCH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQT-AIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNA-TLFFSSATYNINV 237 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 237 (268)
|+|||+++.++|+.+..|+..+...... .|++||+||+|+. ..+.+..+++.++++..++ ++++|||++|.||
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS-----ELREVSLAEAQSLAEHYDILCAIETSAKDSSNV 180 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc-----cccccCHHHHHHHHHHcCCCEEEEEeCCCCCCH
Confidence 9999999999999999999999887644 4457999999972 1233457888999999999 9999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 041042 238 NKILKFITAKLFDI 251 (268)
Q Consensus 238 ~~~f~~l~~~i~~~ 251 (268)
+++|++|++.+.+.
T Consensus 181 ~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 181 EEAFLRVATELIMR 194 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988754
No 5
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.8e-34 Score=235.21 Aligned_cols=167 Identities=19% Similarity=0.377 Sum_probs=150.9
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+++|++|||||||+++|.++.+...+.+|++.++..+.+.+++..+.+++|||+|+++|..++..+++++|++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 56679999999999999999999999999888999999999989999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
|+|||+++.++|+.+..|+..+.......+| +||+||+|+. ..+.+..++++.+++..++++++|||++|.||+
T Consensus 103 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 177 (201)
T 2ew1_A 103 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA-----ERREVSQQRAEEFSEAQDMYYLETSAKESDNVE 177 (201)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-----cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999999999999888655555 6999999972 223344778889999999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 041042 239 KILKFITAKLFDI 251 (268)
Q Consensus 239 ~~f~~l~~~i~~~ 251 (268)
++|++|++.+.+.
T Consensus 178 ~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 178 KLFLDLACRLISE 190 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 6
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=3.3e-34 Score=231.77 Aligned_cols=164 Identities=13% Similarity=0.140 Sum_probs=140.7
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|++|||||||+++|.++.+...+.+|++.++ ...+.+++..+.+++|||+|+++|..+ ..+++++|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 45579999999999999999999999999889999998776 466778999999999999999998876 6799999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC----CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcC-CCC
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCN----QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSA-TYN 234 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~----~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~ 234 (268)
|+|||+++.++|+.+..|+..+.... .+.|.||||||+|+. ..+.+..+++.++++.+++++++||| ++|
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g 170 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA-----QYRQVTKAEGVALAGRFGCLFFEVSACLDF 170 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG-----GGCSSCHHHHHHHHHHHTCEEEECCSSSCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh-----hcCccCHHHHHHHHHHcCCcEEEEeecCcc
Confidence 99999999999999999999998763 456668999999962 22344578899999999999999999 899
Q ss_pred cCHHHHHHHHHHHHhc
Q 041042 235 INVNKILKFITAKLFD 250 (268)
Q Consensus 235 ~~i~~~f~~l~~~i~~ 250 (268)
.||+++|+.|++.+.+
T Consensus 171 ~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 171 EHVQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhh
Confidence 9999999999988754
No 7
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=7e-34 Score=230.72 Aligned_cols=171 Identities=19% Similarity=0.300 Sum_probs=151.6
Q ss_pred CCceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 041042 79 DNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIA 158 (268)
Q Consensus 79 ~~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~ 158 (268)
.....+||+++|++|||||||+++|.++.+...+.+|++.++. ..+.+++..+.+++|||+|+++|..++..+++++|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 3566899999999999999999999999998889999987775 567789999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCe-EEEEcCCCCcC
Q 041042 159 ILFMFDLTSRCTLKSV-IRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNAT-LFFSSATYNIN 236 (268)
Q Consensus 159 vilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~ 236 (268)
+|+|||+++.++|+.+ ..|+..+....++.|.+||+||+|+ ..+..+.+..+++.++++.+++. ++++||++|.|
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 174 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDL---RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIG 174 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGG---CCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh---ccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCC
Confidence 9999999999999997 6899999888777777899999997 22223455688999999999998 99999999999
Q ss_pred HHHHHHHHHHHHhcCcc
Q 041042 237 VNKILKFITAKLFDIPW 253 (268)
Q Consensus 237 i~~~f~~l~~~i~~~~~ 253 (268)
|+++|++|++.+.+.+.
T Consensus 175 i~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 175 LNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp HHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999987753
No 8
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=8.8e-34 Score=229.73 Aligned_cols=167 Identities=18% Similarity=0.326 Sum_probs=145.5
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|++|||||||+++|.++.+...+.+|++.++..+.+.+++..+.+++|||+|++.|..++..+++++|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 55679999999999999999999999999888889999999888899999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
|+|||+++.++|+.+..|+..+........| +||+||+|+. ..+.+..+++..+++.++++++++||++|.||+
T Consensus 98 i~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 98 LLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE-----SRRDVKREEGEAFAREHGLIFMETSAKTACNVE 172 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC-----CccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999999999999887554444 7999999972 223344778899999999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 041042 239 KILKFITAKLFDI 251 (268)
Q Consensus 239 ~~f~~l~~~i~~~ 251 (268)
++|++|++.+.+.
T Consensus 173 ~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 173 EAFINTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 9
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=1.5e-33 Score=227.89 Aligned_cols=166 Identities=25% Similarity=0.411 Sum_probs=148.9
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|.+|||||||+++|.++.+...+.+|+|.++....+..++..+.+++|||+|++.+..++..+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 45579999999999999999999999999888899999999888888899999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCC-CceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQT-AIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
|+|||+++..+|+.+..|+..+...... .|++||+||+|+. ..+.+..++++++++.++++++++||++|.|++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 173 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE-----DERVVPAEDGRRLADDLGFEFFEASAKENINVK 173 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc-----cccCCCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 9999999999999999999999887644 4457999999972 223344678899999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 041042 239 KILKFITAKLFD 250 (268)
Q Consensus 239 ~~f~~l~~~i~~ 250 (268)
++|++|++.+.+
T Consensus 174 ~l~~~l~~~i~~ 185 (189)
T 2gf9_A 174 QVFERLVDVICE 185 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998864
No 10
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=225.61 Aligned_cols=168 Identities=21% Similarity=0.388 Sum_probs=150.4
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+++|.+|||||||+++|.++.+...+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 45679999999999999999999999998888999999999989999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
|+|||+++..+|+.+..|+..+....++.|.|||+||+|+. ..+....+++..++...+++++++||++|.|+++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP-----ERKVVETEDAYKFAGQMGIQLFETSAKENVNVEE 160 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG-----GGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc-----hhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 99999999999999999999998887777778999999972 2233447888999999999999999999999999
Q ss_pred HHHHHHHHHhcCc
Q 041042 240 ILKFITAKLFDIP 252 (268)
Q Consensus 240 ~f~~l~~~i~~~~ 252 (268)
+|++|.+.+.+..
T Consensus 161 l~~~l~~~~~~~~ 173 (181)
T 3tw8_B 161 MFNCITELVLRAK 173 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887765
No 11
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2.1e-33 Score=225.03 Aligned_cols=170 Identities=16% Similarity=0.145 Sum_probs=148.5
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+++|++|||||||+++|.++.+...+.+|++.++ ...+.+++..+.+++|||+|++.|..++..+++.+|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 34579999999999999999999999999889999998877 67888899999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCC--CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQ--TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINV 237 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 237 (268)
++|||+++.++|+.+..|+..+..... +.|.+||+||+|+. ..+.+..+++..+++.++++++++||++|.|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH-----MERVISYEEGKALAESWNAAFLESSAKENQTA 156 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT-----TTCCSCHHHHHHHHHHTTCEEEECCTTSHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch-----hcceecHHHHHHHHHHhCCcEEEEecCCCCCH
Confidence 999999999999999999999877632 45557999999972 22445578899999999999999999999999
Q ss_pred HHHHHHHHHHHhcCccch
Q 041042 238 NKILKFITAKLFDIPWTL 255 (268)
Q Consensus 238 ~~~f~~l~~~i~~~~~~~ 255 (268)
+++|++|++.+.......
T Consensus 157 ~~l~~~l~~~~~~~~~~~ 174 (181)
T 3t5g_A 157 VDVFRRIILEAEKMDGAC 174 (181)
T ss_dssp HHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHhcCCc
Confidence 999999999998876443
No 12
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=6.6e-34 Score=231.76 Aligned_cols=168 Identities=15% Similarity=0.206 Sum_probs=142.9
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccccc-chhhhhcCCcE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQD-HLPVACKDSIA 158 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~a~~ 158 (268)
....+||+|+|++|||||||+++|.+..+...+.++++.++..+.+.+++..+.+++|||+|++.+.. ++..|++++|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 44579999999999999999999986554444556677788888888999999999999999998765 78889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhCC--CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcC
Q 041042 159 ILFMFDLTSRCTLKSVIRWYQQARKCNQ--TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNIN 236 (268)
Q Consensus 159 vilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 236 (268)
+|+|||++++++|+.+..|+..+..... +.|.||||||+|+. ..+.+..++++.+++.+++++++|||++|.|
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~ 174 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA-----RSREVSLEEGRHLAGTLSCKHIETSAALHHN 174 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT-----TTCCSCHHHHHHHHHHTTCEEEEEBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc-----ccCCcCHHHHHHHHHHhCCEEEEEcCCCCCC
Confidence 9999999999999999999999987653 45557999999972 1233457788899999999999999999999
Q ss_pred HHHHHHHHHHHHhcCc
Q 041042 237 VNKILKFITAKLFDIP 252 (268)
Q Consensus 237 i~~~f~~l~~~i~~~~ 252 (268)
|+++|++|++.+.+.+
T Consensus 175 v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 175 TRELFEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999987654
No 13
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.9e-33 Score=227.65 Aligned_cols=172 Identities=20% Similarity=0.368 Sum_probs=153.5
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|.+|||||||+++|.++.+...+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 91 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 45679999999999999999999999999888999999999888999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINV 237 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 237 (268)
|+|||+++..+++.+..|+..+.... ...|++||+||+|+ ....+..+++..+++..+++++++||++|.|+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 165 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK------ENREVDRNEGLKFARKHSMLFIEASAKTCDGV 165 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS------SSCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcC------cccccCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence 99999999999999999999997764 34455799999997 22334567888999999999999999999999
Q ss_pred HHHHHHHHHHHhcCccchhc
Q 041042 238 NKILKFITAKLFDIPWTLER 257 (268)
Q Consensus 238 ~~~f~~l~~~i~~~~~~~~~ 257 (268)
+++|++|.+.+.+.+...+.
T Consensus 166 ~~l~~~l~~~~~~~~~~~~~ 185 (195)
T 1x3s_A 166 QCAFEELVEKIIQTPGLWES 185 (195)
T ss_dssp HHHHHHHHHHHHTSGGGTCC
T ss_pred HHHHHHHHHHHHhhhhhhcc
Confidence 99999999999987654444
No 14
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=3.4e-34 Score=228.75 Aligned_cols=169 Identities=20% Similarity=0.330 Sum_probs=148.9
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECC-eEEEEEEEeCCCccccccchhhhhcCCcE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRG-ARISYSIWEVTGDAKAQDHLPVACKDSIA 158 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~ 158 (268)
....+||+++|++|||||||+++|.++.+...+.+|+|.++..+.+.+++ ..+.+++|||+|++.+..++..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 34579999999999999999999999988777888999898888888887 67899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC---CCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCC
Q 041042 159 ILFMFDLTSRCTLKSVIRWYQQARKCN---QTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYN 234 (268)
Q Consensus 159 vilv~D~~~~~s~~~~~~~~~~i~~~~---~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 234 (268)
+|+|||+++.++|+.+..|+..+.... ...|+ +||+||+|+. ..+.+..+++..+++.++++++++||++|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 157 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE-----HMRTIKPEKHLRFCQENGFSSHFVSAKTG 157 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG-----GGCSSCHHHHHHHHHHHTCEEEEECTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc-----cccccCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 999999999999999999999987753 25564 6999999972 12334467889999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCcc
Q 041042 235 INVNKILKFITAKLFDIPW 253 (268)
Q Consensus 235 ~~i~~~f~~l~~~i~~~~~ 253 (268)
.||+++|++|++.+.+.++
T Consensus 158 ~gi~~l~~~l~~~~~~~~~ 176 (178)
T 2hxs_A 158 DSVFLCFQKVAAEILGIKL 176 (178)
T ss_dssp TTHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHhhhh
Confidence 9999999999999988764
No 15
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=2.6e-34 Score=230.72 Aligned_cols=168 Identities=20% Similarity=0.328 Sum_probs=120.9
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+++|++|||||||+++|.++.+...+.+|++.++..+.+.+++..+.+++|||+|++.|..++..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 34579999999999999999999999988888889999999888888999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCC-CceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQT-AIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
|+|||++++.+|+.+..|+..+...... .|++||+||+|+. ..+.+..+++.++++.++++++++||++|.||+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN-----DKRQVSKERGEKLALDYGIKFMETSAKANINVE 159 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC-----SCCCSCHHHHHHHHHHHTCEEEECCC---CCHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC-----ccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 9999999999999999999999887544 4457999999973 113345788899999999999999999999999
Q ss_pred HHHHHHHHHHhcCc
Q 041042 239 KILKFITAKLFDIP 252 (268)
Q Consensus 239 ~~f~~l~~~i~~~~ 252 (268)
++|++|.+.+.+..
T Consensus 160 ~l~~~l~~~i~~~~ 173 (183)
T 2fu5_C 160 NAFFTLARDIKAKM 173 (183)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887653
No 16
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-33 Score=221.77 Aligned_cols=166 Identities=19% Similarity=0.370 Sum_probs=147.5
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
..+||+++|.+|||||||+++|.++.+...+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999999888899999999988888999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccc-hhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDL-QWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
|||+++..+++.+..|+..+.......+| ++|+||+|+. .... +.+..+++..+++..+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~---~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL---QEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVND 158 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG---GSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc---ccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999887644444 6999999973 2211 33457888999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 041042 240 ILKFITAKLFD 250 (268)
Q Consensus 240 ~f~~l~~~i~~ 250 (268)
+|++|.+.+.+
T Consensus 159 l~~~l~~~i~~ 169 (170)
T 1ek0_A 159 VFLGIGEKIPL 169 (170)
T ss_dssp HHHHHHTTSCC
T ss_pred HHHHHHHHHhh
Confidence 99999887643
No 17
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1.5e-33 Score=223.12 Aligned_cols=165 Identities=22% Similarity=0.427 Sum_probs=141.0
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
...+||+++|++|||||||+++|.++.+...+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 45799999999999999999999999998889999999998888889999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhCC-CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 161 FMFDLTSRCTLKSVIRWYQQARKCNQ-TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 161 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
+|||+++.++|+.+..|+..+..... +.|+++|+||+|+. ..+.+..+++.++++..+++++++||++|.|+++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE-----KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEE 158 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG-----GGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc-----cccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 99999999999999999999877653 44447999999972 1233447788999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 041042 240 ILKFITAKLFD 250 (268)
Q Consensus 240 ~f~~l~~~i~~ 250 (268)
+|++|++.+.+
T Consensus 159 l~~~l~~~~~~ 169 (170)
T 1z08_A 159 LFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 18
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=1.8e-33 Score=222.06 Aligned_cols=164 Identities=18% Similarity=0.372 Sum_probs=148.9
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
..+||+++|.+|||||||+++|.++.+...+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence 46999999999999999999999999988899999999988999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHH
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKIL 241 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f 241 (268)
|||+++.++++.+..|+..+.....+.|.++|+||+|+. ..+.+..+++..+++..+++++++||++|.|++++|
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 158 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL-----DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG-----GGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC-----cccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999998876666778999999972 122344778889999999999999999999999999
Q ss_pred HHHHHHHhc
Q 041042 242 KFITAKLFD 250 (268)
Q Consensus 242 ~~l~~~i~~ 250 (268)
++|.+.+.+
T Consensus 159 ~~l~~~~~~ 167 (168)
T 1z2a_A 159 KYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999998865
No 19
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=6.5e-33 Score=219.28 Aligned_cols=166 Identities=27% Similarity=0.453 Sum_probs=148.8
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+++|.+|||||||+++|.++.+...+.+|.|.++....+.+++..+.+.+|||+|++++..++..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 45679999999999999999999999998888999999999888899999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
|+|||+++..+++.+..|+..+.......+| ++|+||+|+. ..+.+..+++..+++..+++++++||++|.|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT-----DVREVMERDAKDYADSIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc-----cccccCHHHHHHHHHHcCCEEEEEeCCCCcCHH
Confidence 9999999999999999999999888555555 6999999972 223344778889999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 041042 239 KILKFITAKLFD 250 (268)
Q Consensus 239 ~~f~~l~~~i~~ 250 (268)
++|++|.+.+.+
T Consensus 158 ~l~~~i~~~i~~ 169 (170)
T 1z0j_A 158 ELFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHhc
Confidence 999999988753
No 20
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=3.3e-33 Score=220.78 Aligned_cols=166 Identities=20% Similarity=0.378 Sum_probs=147.6
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+++|++|||||||+++|.++.+...+.+|++.++..+.+.+++..+.+++|||+|++.+..++..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 34679999999999999999999999998888889999999888899999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
|+|||+++..+|+.+..|+..+........| +||+||+|+. ..+....+++.++++..+++++++||++|.|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 157 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA-----NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVN 157 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc-----cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 9999999999999999999999887544444 6999999962 122344678889999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 041042 239 KILKFITAKLFD 250 (268)
Q Consensus 239 ~~f~~l~~~i~~ 250 (268)
++|++|.+.+.+
T Consensus 158 ~l~~~i~~~~~~ 169 (170)
T 1r2q_A 158 EIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHTSCC
T ss_pred HHHHHHHHHHhh
Confidence 999999987643
No 21
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=4e-33 Score=222.30 Aligned_cols=166 Identities=20% Similarity=0.340 Sum_probs=148.5
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|.+|||||||+++|.++.+...+.+|++.++..+.+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 45579999999999999999999999999888899999999888889999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCC-CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQ-TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
|+|||+++..+++.+..|+..+..... +.|++||+||+|+. ..+.+..++++++++.++++++++||++|.|++
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 166 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE-----AQRDVTYEEAKQFAEENGLLFLEASAKTGENVE 166 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-----cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999999999988764 44447999999972 223344788899999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 041042 239 KILKFITAKLFD 250 (268)
Q Consensus 239 ~~f~~l~~~i~~ 250 (268)
++|++|++.+.+
T Consensus 167 ~l~~~l~~~i~~ 178 (179)
T 1z0f_A 167 DAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHhh
Confidence 999999998864
No 22
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=5.5e-33 Score=225.22 Aligned_cols=168 Identities=19% Similarity=0.351 Sum_probs=152.0
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|.+|||||||+++|.++.+...+.++++.++....+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 45679999999999999999999999999889999999999989999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
|+|||+++..+|+.+..|+..+........| +||+||+|+. ..+.+..+++..+++.++++++++||++|.|++
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT-----TKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 167 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-----TTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc-----cccccCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Confidence 9999999999999999999999888665555 7999999972 223344678899999999999999999999999
Q ss_pred HHHHHHHHHHhcCc
Q 041042 239 KILKFITAKLFDIP 252 (268)
Q Consensus 239 ~~f~~l~~~i~~~~ 252 (268)
++|++|++.+.+..
T Consensus 168 ~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 168 QSFMTMAAEIKKRM 181 (196)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887754
No 23
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.6e-33 Score=226.20 Aligned_cols=167 Identities=20% Similarity=0.368 Sum_probs=149.4
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|.+|||||||+++|.++.+...+.+|+|.++..+.+.+++..+.+.+|||+|++++..++..+++++|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 56679999999999999999999999999888899999999888889999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCC-ceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTA-IPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~-~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
|+|||+++..+|+.+..|+..+....... |++||+||+|+. ..+.+..+++..+++..+++++++||++|.|++
T Consensus 102 i~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS-----QAREVPTEEARMFAENNGLLFLETSALDSTNVE 176 (193)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG-----GGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc-----cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999999998775444 447999999972 122344778899999999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 041042 239 KILKFITAKLFDI 251 (268)
Q Consensus 239 ~~f~~l~~~i~~~ 251 (268)
++|++|.+.+.+.
T Consensus 177 ~l~~~l~~~i~~~ 189 (193)
T 2oil_A 177 LAFETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988653
No 24
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=5.6e-33 Score=222.21 Aligned_cols=168 Identities=24% Similarity=0.406 Sum_probs=148.2
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+++|.+|||||||+++|.++.+...+.+|++.++....+.+++..+.+++|||+|++++..++..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 45679999999999999999999999999888889999999888899999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCC-ceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTA-IPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~-~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
|+|||+++..+|+.+..|+..+....... |++||+||+|+. ..+.+..+++.++++.++++++++||++|.|++
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL-----DARKVTAEDAQTYAQENGLFFMETSAKTATNVK 163 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT-----TTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc-----ccccCCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 99999999999999999999998876444 447999999972 123344778899999999999999999999999
Q ss_pred HHHHHHHHHHhcCc
Q 041042 239 KILKFITAKLFDIP 252 (268)
Q Consensus 239 ~~f~~l~~~i~~~~ 252 (268)
++|++|.+.+...+
T Consensus 164 ~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 164 EIFYEIARRLPRVQ 177 (181)
T ss_dssp HHHHHHHHTCC---
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999887654
No 25
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=2.5e-33 Score=221.72 Aligned_cols=164 Identities=23% Similarity=0.421 Sum_probs=141.4
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
..+||+++|++|||||||+++|.++.+...+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 35899999999999999999999999988899999999888888889989999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCCCC-ceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCNQTA-IPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~~~~-~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
|||+++..+|+.+..|+..+....... |.++|+||+|+ ..+.+..+++.++++.++++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM------ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC------TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC------CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 999999999999999999998876544 44799999996 22334567888999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 041042 241 LKFITAKLFDI 251 (268)
Q Consensus 241 f~~l~~~i~~~ 251 (268)
|++|.+.+.+.
T Consensus 156 ~~~l~~~~~~~ 166 (170)
T 1g16_A 156 FFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 26
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-33 Score=231.51 Aligned_cols=166 Identities=17% Similarity=0.233 Sum_probs=137.7
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCC--CCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccc-cccchhhhhcCC
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDE--KEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK-AQDHLPVACKDS 156 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~a 156 (268)
....+||+|+|++|||||||+++|++.. |... .+++|.++..+.+.+++..+.+.+|||+|++. +..+...|++.+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 4456999999999999999999999743 4433 34578888888889999999999999999887 566778889999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCC
Q 041042 157 IAILFMFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYN 234 (268)
Q Consensus 157 ~~vilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 234 (268)
+++|+|||+++.+||+.+..|+..+.... .+.|+||||||+||. ..+.+..++++.++..++++|++|||++|
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~-----~~r~v~~~e~~~~a~~~~~~~~e~SAk~g 187 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-----RCREVSVSEGRACAVVFDCKFIETSAAVQ 187 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG-----GGCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh-----cCceEeHHHHHHHHHHcCCEEEEEeCCCC
Confidence 99999999999999999999998887642 345567999999972 12334467788899999999999999999
Q ss_pred cCHHHHHHHHHHHHhcC
Q 041042 235 INVNKILKFITAKLFDI 251 (268)
Q Consensus 235 ~~i~~~f~~l~~~i~~~ 251 (268)
.||+++|++|++.+...
T Consensus 188 ~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 188 HNVKELFEGIVRQVRLR 204 (211)
T ss_dssp BSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999988543
No 27
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=228.75 Aligned_cols=166 Identities=20% Similarity=0.395 Sum_probs=140.9
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|.+|||||||+++|.++.+...+.+|++.++..+.+.+++..+.+++|||+|++++..++..+++++|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999999998888899999999888999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHh-CCeEEEEcCCCCcCH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKAL-NATLFFSSATYNINV 237 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i 237 (268)
|+|||+++..+|+.+..|+..+........| +||+||+|+. ..+.+..++++++++.. +++++++||++|.||
T Consensus 103 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 177 (192)
T 2il1_A 103 ILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE-----TDREITRQQGEKFAQQITGMRFCEASAKDNFNV 177 (192)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-----cccccCHHHHHHHHHhcCCCeEEEEeCCCCCCH
Confidence 9999999999999999999999887654444 7999999972 12334467788899885 899999999999999
Q ss_pred HHHHHHHHHHHhc
Q 041042 238 NKILKFITAKLFD 250 (268)
Q Consensus 238 ~~~f~~l~~~i~~ 250 (268)
+++|++|.+.+.+
T Consensus 178 ~~l~~~l~~~i~~ 190 (192)
T 2il1_A 178 DEIFLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998864
No 28
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=5.1e-33 Score=221.70 Aligned_cols=167 Identities=20% Similarity=0.317 Sum_probs=144.8
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+++|.+|||||||+++|.++.+...+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 45679999999999999999999999999888999999999888999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC-----CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHH-HhCCeEEEEcCCC
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCN-----QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAK-ALNATLFFSSATY 233 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~-----~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~ 233 (268)
++|||+++..+++.+..|+..+.... .+.|.++|+||+|+. ...+..+++.++++ ..+++++++||++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS------ERQVSTEEAQAWCRDNGDYPYFETSAKD 157 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS------SCSSCHHHHHHHHHHTTCCCEEECCTTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc------ccccCHHHHHHHHHhcCCceEEEEeCCC
Confidence 99999999999999999999987764 344557999999972 23445778888888 5678999999999
Q ss_pred CcCHHHHHHHHHHHHhcCc
Q 041042 234 NINVNKILKFITAKLFDIP 252 (268)
Q Consensus 234 ~~~i~~~f~~l~~~i~~~~ 252 (268)
|.|++++|++|++.+.+.+
T Consensus 158 ~~gi~~l~~~l~~~~~~~~ 176 (177)
T 1wms_A 158 ATNVAAAFEEAVRRVLATE 176 (177)
T ss_dssp CTTHHHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHHHhhc
Confidence 9999999999999987653
No 29
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=6.2e-33 Score=222.66 Aligned_cols=165 Identities=16% Similarity=0.208 Sum_probs=147.2
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+++|++|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+++|||+|++.+..++..+++++|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 55679999999999999999999999999889999988777 67788899999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHh-C-CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCC-CCcC
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKC-N-QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSAT-YNIN 236 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~-~-~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~ 236 (268)
|+|||+++.++|+.+..|+..+... . .+.|.+||+||+|+. ..+.+..+++.++++.++++++++||+ +|.|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~ 168 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM-----HLRKVTRDQGKEMATKYNIPYIETSAKDPPLN 168 (183)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS-----TTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch-----hccCcCHHHHHHHHHHhCCeEEEeccCCCCCC
Confidence 9999999999999999999998764 2 345557999999972 223455788999999999999999999 9999
Q ss_pred HHHHHHHHHHHHhc
Q 041042 237 VNKILKFITAKLFD 250 (268)
Q Consensus 237 i~~~f~~l~~~i~~ 250 (268)
++++|++|.+.+.+
T Consensus 169 v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 169 VDKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 30
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6e-33 Score=225.10 Aligned_cols=170 Identities=17% Similarity=0.236 Sum_probs=147.7
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+++|++|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+++|||+|+++|..++..+++++|++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 45679999999999999999999999999888999988766 46677888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCCc-------cchhchHHHHHHHHHHhCC-eEEEEc
Q 041042 160 LFMFDLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLPI-------DLQWTIASQARAYAKALNA-TLFFSS 230 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~S 230 (268)
|+|||+++.++|+.+. .|+..+....++.|++||+||+|+...... ..+.+..+++.++++.+++ ++++||
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 173 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS 173 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEee
Confidence 9999999999999998 899999988777777899999997321000 0123447889999999998 999999
Q ss_pred CCCCcCHHHHHHHHHHHHhc
Q 041042 231 ATYNINVNKILKFITAKLFD 250 (268)
Q Consensus 231 a~~~~~i~~~f~~l~~~i~~ 250 (268)
|++|.||+++|++|++.++.
T Consensus 174 a~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 174 ALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999998764
No 31
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=3e-33 Score=226.05 Aligned_cols=166 Identities=20% Similarity=0.370 Sum_probs=143.9
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccc-cchhhhhcCCcE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQ-DHLPVACKDSIA 158 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-~~~~~~~~~a~~ 158 (268)
....+||+|+|.+|||||||+++|.++.+...+.+|++.++....+.+++..+.+++|||+|++++. .++..+++++|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 4457999999999999999999999999988899999999988899999999999999999999998 889999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCC--
Q 041042 159 ILFMFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYN-- 234 (268)
Q Consensus 159 vilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-- 234 (268)
+|+|||+++..+|+.+..|+..+.... .+.|++||+||+|+. ..+.+..++++.+++.++++++++||++|
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 171 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR-----SAIQVPTDLAQKFADTHSMPLFETSAKNPND 171 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCCEEECCSSSGGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-----ccceeCHHHHHHHHHHcCCEEEEEeCCcCCc
Confidence 999999999999999999999998874 445557999999972 22334577889999999999999999999
Q ss_pred -cCHHHHHHHHHHHHhc
Q 041042 235 -INVNKILKFITAKLFD 250 (268)
Q Consensus 235 -~~i~~~f~~l~~~i~~ 250 (268)
.||+++|++|++.+.+
T Consensus 172 ~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 172 NDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GSCHHHHHHHHC-----
T ss_pred ccCHHHHHHHHHHHHhh
Confidence 9999999999887643
No 32
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=1.8e-33 Score=231.06 Aligned_cols=170 Identities=25% Similarity=0.307 Sum_probs=145.2
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+++|++|||||||+++|.++.+...+.+|++.++ .+.+.+++..+.+++|||+|+++|..++..+++++|++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 45679999999999999999999999999888899998776 46677888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHhCCCCceEEEEeCCCCCCCC-------CccchhchHHHHHHHHHHhC-CeEEEEc
Q 041042 160 LFMFDLTSRCTLKSV-IRWYQQARKCNQTAIPIIIGTKFDDFIQL-------PIDLQWTIASQARAYAKALN-ATLFFSS 230 (268)
Q Consensus 160 ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~S 230 (268)
|+|||+++.++|+.+ ..|+..+....++.|.||||||+|+.... ....+.+..+++.++++.++ ++|++||
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 183 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 183 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEee
Confidence 999999999999999 79999998887666668999999972100 00012344788999999988 6999999
Q ss_pred CC-CCcCHHHHHHHHHHHHhc
Q 041042 231 AT-YNINVNKILKFITAKLFD 250 (268)
Q Consensus 231 a~-~~~~i~~~f~~l~~~i~~ 250 (268)
|+ +|.||+++|+.|++.+++
T Consensus 184 Ak~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 184 ALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TTTCHHHHHHHHHHHHHHHHH
T ss_pred eccCCcCHHHHHHHHHHHHhh
Confidence 99 689999999999998864
No 33
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.5e-34 Score=232.96 Aligned_cols=167 Identities=22% Similarity=0.373 Sum_probs=150.9
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|.+|||||||+++|.++.+...+.+|++.++....+.+++..+.+++|||+|++.+..++..+++++|++
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 99 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF 99 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence 56689999999999999999999999999888889999999888999999899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
|+|||+++.++|+.+..|+..+.......+| +||+||+|+. ..+.+..+++..+++.++++++++||++|.||+
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 100 ILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME-----EERVVPTEKGQLLAEQLGFDFFEASAKENISVR 174 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-----cccccCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 9999999999999999999999888754445 6999999972 223445788999999999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 041042 239 KILKFITAKLFDI 251 (268)
Q Consensus 239 ~~f~~l~~~i~~~ 251 (268)
++|++|++.+.+.
T Consensus 175 ~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 175 QAFERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 34
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=3.8e-33 Score=220.79 Aligned_cols=164 Identities=15% Similarity=0.213 Sum_probs=130.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccccc-chhhhhcCCcEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQD-HLPVACKDSIAILF 161 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~a~~vil 161 (268)
.+||+++|++|||||||+++|.+..+...+.++.+.++..+.+.+++..+.+.+|||+|++.+.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 48999999999999999999998877766767777888888889999999999999999999876 77888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCC--CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCNQ--TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
|||++++++|+.+..|+..+..... +.|.+||+||+|+. ..+.+..+++..+++.++++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA-----RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh-----hcccCCHHHHHHHHHHcCCcEEEecCccCCCHHH
Confidence 9999999999999999999988764 55667999999972 2344557889999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 041042 240 ILKFITAKLFDI 251 (268)
Q Consensus 240 ~f~~l~~~i~~~ 251 (268)
+|+++++.+...
T Consensus 157 l~~~l~~~i~~~ 168 (169)
T 3q85_A 157 LFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999987654
No 35
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-32 Score=220.34 Aligned_cols=168 Identities=21% Similarity=0.366 Sum_probs=140.1
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKE-QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIA 158 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~ 158 (268)
....+||+++|.+|||||||+++|.++.+. ..+.+|++.++....+.+++..+.+++|||+|++.+..++..+++++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 456799999999999999999999999874 4678899999988888899999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhCCC-CceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCH
Q 041042 159 ILFMFDLTSRCTLKSVIRWYQQARKCNQT-AIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINV 237 (268)
Q Consensus 159 vilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 237 (268)
+|+|||+++..+|+.+..|+..+...... .|.+||+||+|+. . .+.+..+++..+++.++++++++||++|.|+
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~---~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA---H--ERVVKREDGEKLAKEYGLPFMETSAKTGLNV 161 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT---S--CCCSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC---c--ccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 99999999999999999999999887654 4447999999973 1 2334467888999999999999999999999
Q ss_pred HHHHHHHHHHHhcCc
Q 041042 238 NKILKFITAKLFDIP 252 (268)
Q Consensus 238 ~~~f~~l~~~i~~~~ 252 (268)
+++|++|.+.+.+..
T Consensus 162 ~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 162 DLAFTAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987654
No 36
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=6.3e-33 Score=223.03 Aligned_cols=168 Identities=19% Similarity=0.296 Sum_probs=150.2
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|++|||||||+++|.++.+...+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 45679999999999999999999999999888999999999888899999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCC-ceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTA-IPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~-~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
|+|||+++.++|+.+..|+..+....... |++||+||+|+. ..+.+..+++..+++..+++++++||++|.|++
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD-----ADREVTFLEASRFAQENELMFLETSALTGENVE 161 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-----cccccCHHHHHHHHHHcCCEEEEecCCCCCCHH
Confidence 99999999999999999999988875444 447999999972 123344678889999999999999999999999
Q ss_pred HHHHHHHHHHhcCc
Q 041042 239 KILKFITAKLFDIP 252 (268)
Q Consensus 239 ~~f~~l~~~i~~~~ 252 (268)
++|+++++.+.+..
T Consensus 162 ~l~~~l~~~~~~~~ 175 (186)
T 2bme_A 162 EAFVQCARKILNKI 175 (186)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887643
No 37
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=1.1e-32 Score=225.61 Aligned_cols=168 Identities=18% Similarity=0.316 Sum_probs=150.7
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|++|||||||+++|.++.+...+.+|++.++....+.+++..+.+.+|||+|+++|..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 45579999999999999999999999999888999999999888999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
|+|||+++..+|+.+..|+..+.......+| +||+||+|+. . .+.+..+++..+++..+++++++||++|.||+
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~---~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK---D--KRVVEYDVAKEFADANKMPFLETSALDSTNVE 159 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT---T--TCCSCHHHHHHHHHHTTCCEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc---c--ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 9999999999999999999999887654444 7999999972 1 12344678889999999999999999999999
Q ss_pred HHHHHHHHHHhcCc
Q 041042 239 KILKFITAKLFDIP 252 (268)
Q Consensus 239 ~~f~~l~~~i~~~~ 252 (268)
++|++|.+.+.+..
T Consensus 160 ~l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 160 DAFLTMARQIKESM 173 (206)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
No 38
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=4.4e-33 Score=222.60 Aligned_cols=162 Identities=20% Similarity=0.301 Sum_probs=136.6
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
...+||+++|++|||||||+++|.++.+.. +.+|++..+ .+.+.+++..+.+++|||+|+++ ..|++++|++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 457999999999999999999999999876 788888554 57788899999999999999987 56889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhC----CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHh-CCeEEEEcCCCCc
Q 041042 161 FMFDLTSRCTLKSVIRWYQQARKCN----QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKAL-NATLFFSSATYNI 235 (268)
Q Consensus 161 lv~D~~~~~s~~~~~~~~~~i~~~~----~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~ 235 (268)
+|||++++++|+.+..|++.+.... ++.|++|||||+|+. ....+.+..+++.++++.. +++++++||++|.
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~---~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS---ASSPRVVGDARARALXADMKRCSYYETXATYGL 154 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB---TTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc---ccccCcCCHHHHHHHHHhhcCCeEEEEeccccC
Confidence 9999999999999999877665542 244557999999962 1223345578888999887 7999999999999
Q ss_pred CHHHHHHHHHHHHhcCc
Q 041042 236 NVNKILKFITAKLFDIP 252 (268)
Q Consensus 236 ~i~~~f~~l~~~i~~~~ 252 (268)
|++++|++|++.+.+..
T Consensus 155 ~i~~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 155 NVDRVFQEVAQKVVTLR 171 (178)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999887654
No 39
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=228.96 Aligned_cols=168 Identities=19% Similarity=0.302 Sum_probs=139.3
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|++|||||||+++|.++.+...+.+|++.++....+.+++..+.+++|||+|++.+..++..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 45679999999999999999999999999888899999999888899999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCC-CceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQT-AIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
|+|||+++..+|+.+..|+..+...... .|++||+||+|+. ..+.+..+++..+++..++++++|||++|.||+
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD-----PEREVTFLEASRFAQENELMFLETSALTGENVE 176 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG-----GGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc-----cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999999999999887544 4447999999962 123344678889999999999999999999999
Q ss_pred HHHHHHHHHHhcCc
Q 041042 239 KILKFITAKLFDIP 252 (268)
Q Consensus 239 ~~f~~l~~~i~~~~ 252 (268)
++|++|++.+.+..
T Consensus 177 ~l~~~l~~~i~~~~ 190 (200)
T 2o52_A 177 EAFLKCARTILNKI 190 (200)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
No 40
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.5e-33 Score=225.83 Aligned_cols=168 Identities=24% Similarity=0.435 Sum_probs=148.5
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|.+|||||||+++|.++.+...+.+|+|.++....+.+++..+.+++|||+|++++..++..+++.+|++
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 45679999999999999999999999998888999999999888888888999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
|+|||+++.++|+.+..|+..+........| +||+||+|+. ..+.+..++++++++..+++++++||++|.|++
T Consensus 100 ilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 174 (192)
T 2fg5_A 100 VIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS-----DIREVPLKDAKEYAESIGAIVVETSAKNAINIE 174 (192)
T ss_dssp EEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc-----cccccCHHHHHHHHHHcCCEEEEEeCCCCcCHH
Confidence 9999999999999999999999888654445 6999999972 123345788999999999999999999999999
Q ss_pred HHHHHHHHHHhcCc
Q 041042 239 KILKFITAKLFDIP 252 (268)
Q Consensus 239 ~~f~~l~~~i~~~~ 252 (268)
++|++|.+.+.+.+
T Consensus 175 ~l~~~l~~~i~~~~ 188 (192)
T 2fg5_A 175 ELFQGISRQIPPLD 188 (192)
T ss_dssp HHHHHHHHTCC---
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999876654
No 41
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=3.6e-33 Score=224.83 Aligned_cols=170 Identities=25% Similarity=0.307 Sum_probs=145.1
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+++|++|||||||+++|.++.+...+.+|++.++ .+.+.+++..+.+++|||+|++.|..++..+++++|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 34579999999999999999999999999888899988776 45677888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHhCCCCceEEEEeCCCCCCCC-------CccchhchHHHHHHHHHHhC-CeEEEEc
Q 041042 160 LFMFDLTSRCTLKSV-IRWYQQARKCNQTAIPIIIGTKFDDFIQL-------PIDLQWTIASQARAYAKALN-ATLFFSS 230 (268)
Q Consensus 160 ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~S 230 (268)
|+|||++++++|+.+ ..|+..+....++.|.+|||||+|+.... ....+.+..+++.++++.++ ++|++||
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 162 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 162 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEee
Confidence 999999999999999 78999998887766778999999972100 00012345788999999988 7999999
Q ss_pred CC-CCcCHHHHHHHHHHHHhc
Q 041042 231 AT-YNINVNKILKFITAKLFD 250 (268)
Q Consensus 231 a~-~~~~i~~~f~~l~~~i~~ 250 (268)
|+ +|.||+++|+.+++.+++
T Consensus 163 a~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 163 ALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTTBHHHHHHHHHHHHHHHHT
T ss_pred ecCCCcCHHHHHHHHHHHHhc
Confidence 99 689999999999998875
No 42
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=228.97 Aligned_cols=170 Identities=17% Similarity=0.175 Sum_probs=142.4
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|.+|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+++|||+|++.+..++..+++.+|++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 45679999999999999999999999999888999988777 56777788889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINV 237 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 237 (268)
|+|||+++.++|+.+..|+..+.... .+.|.+||+||+|+. ..+.+..+++..+++.++++++++||++|.|+
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS-----PEREVQAVEGKKLAESWGATFMESSARENQLT 174 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG-----GGCCSCHHHHHHHHHHHTCEEEECCTTCHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc-----cccccCHHHHHHHHHHhCCeEEEEeCCCCCCH
Confidence 99999999999999999999997763 344557999999972 22344578889999999999999999999999
Q ss_pred HHHHHHHHHHHhcCccch
Q 041042 238 NKILKFITAKLFDIPWTL 255 (268)
Q Consensus 238 ~~~f~~l~~~i~~~~~~~ 255 (268)
+++|++|++.+.+.....
T Consensus 175 ~~l~~~l~~~i~~~~~~~ 192 (201)
T 3oes_A 175 QGIFTKVIQEIARVENSY 192 (201)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhhhhhh
Confidence 999999999998876543
No 43
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-32 Score=224.52 Aligned_cols=167 Identities=24% Similarity=0.382 Sum_probs=149.6
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|.+|||||||+++|.++.+...+.+|+|.++..+.+.+++..+.+++|||+|++.+..++..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 34579999999999999999999999999888999999999888888999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCC-CceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQT-AIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
|+|||+++..+|+.+..|+..+...... .|++||+||+|+. ..+.+..+++..+++.++++++++||++|.|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 159 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME-----DERVVSSERGRQLADHLGFEFFEASAKDNINVK 159 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT-----TSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC-----cccccCHHHHHHHHHHCCCeEEEEECCCCCCHH
Confidence 9999999999999999999999887644 4447999999972 123344778899999999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 041042 239 KILKFITAKLFDI 251 (268)
Q Consensus 239 ~~f~~l~~~i~~~ 251 (268)
++|++|.+.+.+.
T Consensus 160 ~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 160 QTFERLVDVICEK 172 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888654
No 44
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=5.3e-33 Score=228.62 Aligned_cols=170 Identities=19% Similarity=0.312 Sum_probs=145.2
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
...+||+++|++|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+++|||+|+++|..++..+++++|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4579999999999999999999999999888899998665 466778888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCCccch-------hchHHHHHHHHHHhCC-eEEEEcC
Q 041042 161 FMFDLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQ-------WTIASQARAYAKALNA-TLFFSSA 231 (268)
Q Consensus 161 lv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~Sa 231 (268)
+|||+++.++|+.+. .|+..+..+.++.|++||+||+|+. +... .+..+++.++++.+++ +|++|||
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR----DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSS 161 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH----TCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhh----hCccccccccCCCCHHHHHHHHHHcCCceEEEccC
Confidence 999999999999997 8999999887777778999999962 1111 1247788899999996 9999999
Q ss_pred CCCcCHHHHHHHHHHHHhcCccch
Q 041042 232 TYNINVNKILKFITAKLFDIPWTL 255 (268)
Q Consensus 232 ~~~~~i~~~f~~l~~~i~~~~~~~ 255 (268)
++|.||+++|++|++.+.+.....
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~~~~~ 185 (212)
T 2j0v_A 162 KTQQNVKAVFDTAIKVVLQPPRRK 185 (212)
T ss_dssp TTCTTHHHHHHHHHHHHHCC----
T ss_pred CCCCCHHHHHHHHHHHHhhhhhhc
Confidence 999999999999999998876443
No 45
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-33 Score=229.39 Aligned_cols=170 Identities=19% Similarity=0.372 Sum_probs=142.8
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|++|||||||+++|.++.+...+.+|++.++....+.+++..+.+++|||+|+++|..++..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 45679999999999999999999999999888889999999888899999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
|+|||+++..+|+.+..|+..+.......+| +||+||+|+. ..+.+..+++..+++..+++++++||++|.||+
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA-----HLRAVPTEESKTFAQENQLLFTETSALNSENVD 164 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG-----GGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-----cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999999999999887654444 6999999972 122344678889999999999999999999999
Q ss_pred HHHHHHHHHHhcCccc
Q 041042 239 KILKFITAKLFDIPWT 254 (268)
Q Consensus 239 ~~f~~l~~~i~~~~~~ 254 (268)
++|++|++.+.+....
T Consensus 165 ~l~~~l~~~i~~~~~~ 180 (223)
T 3cpj_B 165 KAFEELINTIYQKVSK 180 (223)
T ss_dssp HHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999877643
No 46
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=1e-32 Score=221.51 Aligned_cols=169 Identities=22% Similarity=0.306 Sum_probs=148.1
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
+..+||+++|.+|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+++|||+|++.|..++..+++.+|++|
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4579999999999999999999999999888888887655 466788999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCCcc----------chhchHHHHHHHHHHhCC-eEEE
Q 041042 161 FMFDLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLPID----------LQWTIASQARAYAKALNA-TLFF 228 (268)
Q Consensus 161 lv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~ 228 (268)
+|||+++..+|+.+. .|+..+....++.|++||+||+|+. ... .+.+..+++..+++.+++ ++++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 158 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR---DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 158 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHH---TCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccccc---ccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 999999999999997 7999998887766778999999972 211 023346788899999997 9999
Q ss_pred EcCCCCcCHHHHHHHHHHHHhcCcc
Q 041042 229 SSATYNINVNKILKFITAKLFDIPW 253 (268)
Q Consensus 229 ~Sa~~~~~i~~~f~~l~~~i~~~~~ 253 (268)
|||++|.|++++|++|.+.+.+.++
T Consensus 159 ~Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (186)
T 1mh1_A 159 CSALTQRGLKTVFDEAIRAVLCPPP 183 (186)
T ss_dssp CCTTTCTTHHHHHHHHHHHHSCCCC
T ss_pred ecCCCccCHHHHHHHHHHHHhcccc
Confidence 9999999999999999999987764
No 47
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=8.8e-33 Score=220.33 Aligned_cols=166 Identities=22% Similarity=0.419 Sum_probs=147.0
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|.+|||||||+++|.++.+...+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 45579999999999999999999999999888999999999888999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCC-CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQ-TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
|+|||+++..+|+.+..|+..+..... +.|+++|+||+|+. ..+.+..+++..+++..+++++++||++|.|++
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 165 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS-----DKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 165 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG-----GGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc-----ccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 999999999999999999999887654 44447999999972 123344778888999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 041042 239 KILKFITAKLFD 250 (268)
Q Consensus 239 ~~f~~l~~~i~~ 250 (268)
++|++|.+.+.+
T Consensus 166 ~l~~~l~~~~~~ 177 (179)
T 2y8e_A 166 QLFRRVAAALPG 177 (179)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHhh
Confidence 999999987654
No 48
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=8.6e-33 Score=223.16 Aligned_cols=169 Identities=21% Similarity=0.329 Sum_probs=148.7
Q ss_pred CCceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeE-EEEEEECCe---------EEEEEEEeCCCccccccc
Q 041042 79 DNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMM-DKTLLVRGA---------RISYSIWEVTGDAKAQDH 148 (268)
Q Consensus 79 ~~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~---------~~~l~i~Dt~G~~~~~~~ 148 (268)
+....+||+|+|++|||||||+++|.++.+...+.+|++.++. .+.+.+++. .+.+++|||+|++.+..+
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 3566799999999999999999999999998888999999887 667777766 789999999999999999
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeE
Q 041042 149 LPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATL 226 (268)
Q Consensus 149 ~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (268)
+..+++++|++|+|||+++..+++.+..|+..+.... .+.|++||+||+|+. ..+.+..+++.++++.+++++
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~ 161 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE-----DQRAVKEEEARELAEKYGIPY 161 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG-----GGCCSCHHHHHHHHHHHTCCE
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-----cccccCHHHHHHHHHHcCCCE
Confidence 9999999999999999999999999999999998876 355567999999972 122344788899999999999
Q ss_pred EEEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 227 FFSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 227 ~~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
+++||++|.|++++|++|.+.+.+..
T Consensus 162 ~~~Sa~~~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 162 FETSAANGTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999887643
No 49
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.7e-33 Score=228.44 Aligned_cols=171 Identities=20% Similarity=0.301 Sum_probs=137.7
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|++|||||||+++|.++.+...+.+|+|.++..+.+.+++..+.+++|||+|++.+..++..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 45569999999999999999999999998888889999999888999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCC-CCceEEEEeCCCCCCCCC-ccchhchHHHHHHHHHHhCCeEEEEcCCCCcCH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQ-TAIPIIIGTKFDDFIQLP-IDLQWTIASQARAYAKALNATLFFSSATYNINV 237 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 237 (268)
|+|||+++..+|+.+..|+..+..... +.|++||+||+|+..... +..+.+..+++..+++..+++++++||++|.||
T Consensus 105 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv 184 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI 184 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTH
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCH
Confidence 999999999999999999999988754 445579999999621000 012334477889999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 041042 238 NKILKFITAKLFD 250 (268)
Q Consensus 238 ~~~f~~l~~~i~~ 250 (268)
+++|++|++.+.+
T Consensus 185 ~el~~~l~~~i~~ 197 (199)
T 2p5s_A 185 VEAVLHLAREVKK 197 (199)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 50
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=223.85 Aligned_cols=172 Identities=19% Similarity=0.238 Sum_probs=139.4
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+++|++|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+++|||+|+++|..++..+++++|++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 55579999999999999999999999998888889988655 46778899999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCC-------ccchhchHHHHHHHHHHhCC-eEEEEc
Q 041042 160 LFMFDLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLP-------IDLQWTIASQARAYAKALNA-TLFFSS 230 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~S 230 (268)
|+|||+++.++|+.+. .|+..+....++.|++||+||+|+..... ...+.+..+++..+++.+++ ++++||
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 175 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECS 175 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEe
Confidence 9999999999999997 79999998877777789999999721100 00123457888999999997 999999
Q ss_pred CCCCcCHHHHHHHHHHHHhcCc
Q 041042 231 ATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 231 a~~~~~i~~~f~~l~~~i~~~~ 252 (268)
|++|.||+++|++|++.+.+.+
T Consensus 176 a~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 176 ALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHhccc
Confidence 9999999999999999887553
No 51
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=1.5e-33 Score=232.80 Aligned_cols=168 Identities=24% Similarity=0.369 Sum_probs=147.2
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCe----------EEEEEEEeCCCccccccch
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGA----------RISYSIWEVTGDAKAQDHL 149 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~----------~~~l~i~Dt~G~~~~~~~~ 149 (268)
....+||+|+|++|||||||+++|.++.+...+.+|++.++..+.+.+++. .+.+++|||+|++.|..++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 566799999999999999999999999998888889998888888888776 7899999999999999999
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEE
Q 041042 150 PVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLF 227 (268)
Q Consensus 150 ~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (268)
..+++.+|++|+|||+++..+|+.+..|+..+.... .+.|++||+||+|+. ..+.+..+++.++++.++++++
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~ 176 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP-----DQREVNERQARELADKYGIPYF 176 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCCEE
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc-----cccccCHHHHHHHHHHCCCcEE
Confidence 999999999999999999999999999998886654 344557999999972 1233447889999999999999
Q ss_pred EEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 228 FSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 228 ~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
+|||++|.||+++|++|.+.+.+..
T Consensus 177 ~~Sa~~g~gi~~l~~~l~~~i~~~~ 201 (217)
T 2f7s_A 177 ETSAATGQNVEKAVETLLDLIMKRM 201 (217)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999887653
No 52
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=1.5e-32 Score=216.56 Aligned_cols=162 Identities=19% Similarity=0.225 Sum_probs=142.1
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
..+||+++|++|||||||+++|.++.+...+.+|++..+. +.+.+++..+.+++|||+|++.+..++..+++++|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999999998888899886654 667788889999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHh--CCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHh-CCeEEEEcCCCCcCHH
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKC--NQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKAL-NATLFFSSATYNINVN 238 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~ 238 (268)
|||++++++|+.+..|+..+... ..+.|+++|+||+|+. ..+.+..+++..+++.+ +++++++||++|.|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE-----DERVVGKEQGQNLARQWCNCAFLESSAKSKINVN 155 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc-----ccccCCHHHHHHHHHHccCCcEEEecCCCCCCHH
Confidence 99999999999999999998775 3355667999999972 22334478888999988 8999999999999999
Q ss_pred HHHHHHHHHHh
Q 041042 239 KILKFITAKLF 249 (268)
Q Consensus 239 ~~f~~l~~~i~ 249 (268)
++|++|.+.+.
T Consensus 156 ~l~~~l~~~i~ 166 (167)
T 1c1y_A 156 EIFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998774
No 53
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=1.7e-32 Score=219.11 Aligned_cols=167 Identities=16% Similarity=0.209 Sum_probs=146.3
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+++|.+|||||||+++|.++.+...+.+|++.++. ..+.+++..+.+.+|||+|++++..++..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 445799999999999999999999999998889999988776 7778899999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHh-CC-CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKC-NQ-TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINV 237 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~-~~-~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 237 (268)
++|||+++.++|+.+..|+..+... .. +.|++||+||+|+. ..+.+..+++..++...+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE-----SQRQVPRSEASAFGASHHVAYFEASAKLRLNV 159 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG-----GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-----cccccCHHHHHHHHHHcCCeEEEecCCCCCCH
Confidence 9999999999999999999988443 33 45557999999972 22334477888999999999999999999999
Q ss_pred HHHHHHHHHHHhcCc
Q 041042 238 NKILKFITAKLFDIP 252 (268)
Q Consensus 238 ~~~f~~l~~~i~~~~ 252 (268)
+++|++|.+.+.+..
T Consensus 160 ~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 160 DEAFEQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999887544
No 54
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.4e-32 Score=217.16 Aligned_cols=164 Identities=20% Similarity=0.256 Sum_probs=132.8
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccc--cccchhhhhcCCcEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK--AQDHLPVACKDSIAI 159 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~~a~~v 159 (268)
..+||+++|++|||||||+++|.++.+... .++.|.++..+.+.+++..+.+++|||+|++. +..+...+++.+|++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 468999999999999999999999887544 44678888888889999999999999999988 567778899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINV 237 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 237 (268)
++|||++++++|+.+..|+..+.... .+.|.+||+||+|+. ..+.+..+++..++..+++++++|||++|.|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA-----RCREVSVEEGRACAVVFDCKFIETSATLQHNV 156 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT-----TTCCSCHHHHHHHHHHHTSEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc-----cccccCHHHHHHHHHHcCCeEEEEecCCCCCH
Confidence 99999999999999999999888753 345567999999973 11234467788899999999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 041042 238 NKILKFITAKLFDI 251 (268)
Q Consensus 238 ~~~f~~l~~~i~~~ 251 (268)
+++|++|++.+...
T Consensus 157 ~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 157 AELFEGVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988643
No 55
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=3.4e-32 Score=221.19 Aligned_cols=163 Identities=19% Similarity=0.374 Sum_probs=144.9
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeE-----------------------------
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGAR----------------------------- 131 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~----------------------------- 131 (268)
...+||+|+|.+|||||||+++|++..+...+.+|++.++....+.+++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 346999999999999999999999999988899999999988888877765
Q ss_pred --------EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCC
Q 041042 132 --------ISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQL 203 (268)
Q Consensus 132 --------~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~ 203 (268)
+.+.+|||+|++.+..++..+++.+|++|+|||+++..+++.+..|+..+..... .|+++|+||+|+
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK~D~---- 159 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-YIIILVANKIDK---- 159 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEECTTC----
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCCc----
Confidence 8899999999999999999999999999999999999999999999999988764 555799999994
Q ss_pred CccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHHhc
Q 041042 204 PIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFD 250 (268)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~i~~ 250 (268)
....+..+++.++++..+++++++||++|.|++++|++|.+.+.+
T Consensus 160 --~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 160 --NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp --C-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred --ccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 223445788899999999999999999999999999999988764
No 56
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=1.9e-32 Score=215.76 Aligned_cols=163 Identities=17% Similarity=0.225 Sum_probs=140.9
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
..+||+++|.+|||||||+++|.++.+...+.+|++..+. ..+.+++..+.+.+|||+|++++..++..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 4699999999999999999999999988888888876653 566788999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCC--CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCNQ--TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
|||+++.++|+.+..|+..+..... +.|.++|+||+|+. ..+.+..+++..+++.++++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-----DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDK 156 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG-----GGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc-----ccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence 9999999999999999999988754 45567999999962 1223447888999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 041042 240 ILKFITAKLFD 250 (268)
Q Consensus 240 ~f~~l~~~i~~ 250 (268)
+|++|.+.+.+
T Consensus 157 l~~~l~~~i~~ 167 (168)
T 1u8z_A 157 VFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 57
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=4.6e-32 Score=221.53 Aligned_cols=166 Identities=20% Similarity=0.305 Sum_probs=146.1
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
...+||+++|.+|||||||+++|.++.+...+.+|++.++. ..+.+++..+.+++|||+|+++|..++..+++++|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 45799999999999999999999999998888999888775 45778899999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHHhCCCCceEEEEeCCCCCCCCCccc----------hhchHHHHHHHHHHhCC-eEEE
Q 041042 161 FMFDLTSRCTLKSV-IRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDL----------QWTIASQARAYAKALNA-TLFF 228 (268)
Q Consensus 161 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~----------~~~~~~~~~~~~~~~~~-~~~~ 228 (268)
+|||+++.++|+.+ ..|+..+....++.|++||+||+|+. .... +.+..+++..+++..++ ++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR---QDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE 178 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGT---TCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhh---cCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence 99999999999999 68999998887777778999999973 2111 22446788999999998 8999
Q ss_pred EcCCCCcCHHHHHHHHHHHHhc
Q 041042 229 SSATYNINVNKILKFITAKLFD 250 (268)
Q Consensus 229 ~Sa~~~~~i~~~f~~l~~~i~~ 250 (268)
|||++|.||+++|++|.+.+++
T Consensus 179 ~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 179 CSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC
T ss_pred eeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999998765
No 58
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=2.8e-32 Score=220.27 Aligned_cols=165 Identities=13% Similarity=0.194 Sum_probs=134.1
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
.+..+||+++|.+|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 45679999999999999999999999988888888877555 46777889999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCC--CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQ--TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINV 237 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 237 (268)
++|||+++..+|+.+..|+..+..... +.|.+||+||+|+. ......+++.++++.++++++++||++|.|+
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 170 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP------TRTVDTKQAHELAKSYGIPFIETSAKTRQGV 170 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS------CCCSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCC------cccCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 999999999999999999999887643 45567999999972 1334578889999999999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 041042 238 NKILKFITAKLFDI 251 (268)
Q Consensus 238 ~~~f~~l~~~i~~~ 251 (268)
+++|++|.+.+.+.
T Consensus 171 ~~l~~~l~~~~~~~ 184 (190)
T 3con_A 171 EDAFYTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
No 59
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=1e-32 Score=225.70 Aligned_cols=168 Identities=23% Similarity=0.337 Sum_probs=147.9
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|.+|||||||+++|.++.+...+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 44579999999999999999999999999888999999999888888999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC-----CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHH-HhCCeEEEEcCCC
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCN-----QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAK-ALNATLFFSSATY 233 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~-----~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~ 233 (268)
|+|||+++..+|+.+..|+..+.... .+.|++||+||+|+. ...+..+++..+++ ..+++++++||++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE------NRQVATKRAQAWCYSKNNIPYFETSAKE 158 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS------CCCSCHHHHHHHHHHTTSCCEEECBTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc------ccccCHHHHHHHHHhcCCceEEEEeCCC
Confidence 99999999999999999999887764 245567999999972 23344677888887 6789999999999
Q ss_pred CcCHHHHHHHHHHHHhcCcc
Q 041042 234 NINVNKILKFITAKLFDIPW 253 (268)
Q Consensus 234 ~~~i~~~f~~l~~~i~~~~~ 253 (268)
|.|++++|++|++.+.+.+.
T Consensus 159 g~gi~~l~~~l~~~~~~~~~ 178 (207)
T 1vg8_A 159 AINVEQAFQTIARNALKQET 178 (207)
T ss_dssp TBSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999887653
No 60
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=2.4e-32 Score=223.12 Aligned_cols=168 Identities=17% Similarity=0.230 Sum_probs=147.4
Q ss_pred CCceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 041042 79 DNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIA 158 (268)
Q Consensus 79 ~~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~ 158 (268)
+....+||+|+|.+|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 355679999999999999999999999998888888888665 4667789999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhCC--CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcC
Q 041042 159 ILFMFDLTSRCTLKSVIRWYQQARKCNQ--TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNIN 236 (268)
Q Consensus 159 vilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 236 (268)
+++|||+++.++|+.+..|+..+..... +.|++||+||+|+. ..+.+..+++..+++.++++++++||++|.|
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 163 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-----DKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG-----GGCCSCHHHHHHHHHHHTCEEEEECTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc-----ccccccHHHHHHHHHHhCCeEEEEeCCCCCC
Confidence 9999999999999999999999988754 55667999999972 1223457888999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCc
Q 041042 237 VNKILKFITAKLFDIP 252 (268)
Q Consensus 237 i~~~f~~l~~~i~~~~ 252 (268)
++++|++|++.+.+..
T Consensus 164 i~~l~~~l~~~i~~~~ 179 (206)
T 2bov_A 164 VDKVFFDLMREIRARK 179 (206)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc
Confidence 9999999999887653
No 61
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=1.4e-32 Score=220.70 Aligned_cols=167 Identities=17% Similarity=0.227 Sum_probs=145.5
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|.+|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 45679999999999999999999999998888888887665 45677889999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCC--CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQ--TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINV 237 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 237 (268)
++|||+++.++|+.+..|+..+..... +.|++||+||+|+. ..+.+..+++.++++.++++++++||++|.|+
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 168 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-----DKRQVSVEEAKNRAEQWNVNYVETSAKTRANV 168 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG-----GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-----ccCccCHHHHHHHHHHcCCeEEEeCCCCCCCH
Confidence 999999999999999999999888754 55667999999972 12234478889999999999999999999999
Q ss_pred HHHHHHHHHHHhcCc
Q 041042 238 NKILKFITAKLFDIP 252 (268)
Q Consensus 238 ~~~f~~l~~~i~~~~ 252 (268)
+++|++|.+.+.+.+
T Consensus 169 ~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 169 DKVFFDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999887543
No 62
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=4.8e-32 Score=218.08 Aligned_cols=170 Identities=12% Similarity=0.203 Sum_probs=145.5
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
..+||+++|.+|||||||+++|.++.+...+.+|++ +.....+.+++..+.+++|||+|++.+..++..+++.+|++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 469999999999999999999999998888888875 4445777889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
|||+++..+|+.+..|+..+.... .+.|.+||+||+|+. ......+++..+++.++++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 155 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP------SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDD 155 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS------SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc------ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 999999999999999999998864 345557999999972 234557888999999999999999999999999
Q ss_pred HHHHHHHHHhcCccchhcc
Q 041042 240 ILKFITAKLFDIPWTLERN 258 (268)
Q Consensus 240 ~f~~l~~~i~~~~~~~~~~ 258 (268)
+|++|.+.+.+.......+
T Consensus 156 l~~~l~~~~~~~~~~~~~~ 174 (189)
T 4dsu_A 156 AFYTLVREIRKHKEKMSKD 174 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhcccc
Confidence 9999999988776544443
No 63
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=4.5e-32 Score=222.76 Aligned_cols=166 Identities=22% Similarity=0.401 Sum_probs=147.5
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|++|||||||+++|.+..+...+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 44569999999999999999999999999888999999999888899999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCC-ceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTA-IPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~-~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
|+|||+++..+|+.+..|+..+....... |++||+||+|+ ..+.+..+++..+++.++++++++||++|.||+
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 170 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM------ETRVVTADQGEALAKELGIPFIESSAKNDDNVN 170 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC------SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC------cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999999998876544 44799999996 223345678888999999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 041042 239 KILKFITAKLFDI 251 (268)
Q Consensus 239 ~~f~~l~~~i~~~ 251 (268)
++|++|.+.+.+.
T Consensus 171 ~l~~~l~~~~~~~ 183 (213)
T 3cph_A 171 EIFFTLAKLIQEK 183 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 64
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=2.4e-32 Score=225.58 Aligned_cols=169 Identities=21% Similarity=0.312 Sum_probs=126.1
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
...+||+++|++|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+++|||+|++.|..++..+++++|++|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4469999999999999999999999998888888887655 466788999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCCccc----------hhchHHHHHHHHHHhCC-eEEE
Q 041042 161 FMFDLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLPIDL----------QWTIASQARAYAKALNA-TLFF 228 (268)
Q Consensus 161 lv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~----------~~~~~~~~~~~~~~~~~-~~~~ 228 (268)
+|||+++..+|+.+. .|+..+....++.|+|||+||+|+. .... +.+..+++..+++..++ ++++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 187 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLR---KDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLE 187 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGG---SCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhh---ccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEE
Confidence 999999999999997 7999998887777778999999972 2110 13346788999999998 9999
Q ss_pred EcCCCCcCHHHHHHHHHHHHhcCcc
Q 041042 229 SSATYNINVNKILKFITAKLFDIPW 253 (268)
Q Consensus 229 ~Sa~~~~~i~~~f~~l~~~i~~~~~ 253 (268)
|||++|.||+++|++|++.+.+.+.
T Consensus 188 ~SA~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 188 CSARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred ecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999887653
No 65
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=2.2e-32 Score=215.75 Aligned_cols=161 Identities=17% Similarity=0.242 Sum_probs=119.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
.+||+++|++|||||||+++|.+..+. ...++.+.++ ...+.+++..+.+++|||+|++.+..++..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 589999999999999999999877653 4455666555 46778899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 163 FDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
||++++++|+.+..|+..+.... .+.|.++|+||+|+. ..+.+..+++..++...+++++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 154 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV-----RSREVSVDEGRACAVVFDCKFIETSAALHHNVQAL 154 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC-----SSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc-----cccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Confidence 99999999999999999988763 345567999999973 22345578889999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 041042 241 LKFITAKLFD 250 (268)
Q Consensus 241 f~~l~~~i~~ 250 (268)
|++|.+.+.+
T Consensus 155 ~~~l~~~~~~ 164 (166)
T 3q72_A 155 FEGVVRQIRL 164 (166)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 66
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=1.6e-32 Score=219.47 Aligned_cols=168 Identities=23% Similarity=0.360 Sum_probs=133.0
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCcE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVR-GARISYSIWEVTGDAKAQDHLPVACKDSIA 158 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~ 158 (268)
....+||+++|.+|||||||+++|.++.+...+.+|++.++....+.++ +..+.+++|||+|++.+..++..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 3457999999999999999999999999988899999999888888887 667899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC-----CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHH-HhCCeEEEEcCC
Q 041042 159 ILFMFDLTSRCTLKSVIRWYQQARKCN-----QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAK-ALNATLFFSSAT 232 (268)
Q Consensus 159 vilv~D~~~~~s~~~~~~~~~~i~~~~-----~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~ 232 (268)
+|+|||+++..+|+.+..|+..+.... .+.|.+||+||+|+ .+..+.+..+++.++++ ..+++++++||+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl----~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA----EESKKIVSEKSAQELAKSLGDIPLFLTSAK 160 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTS----CGGGCCSCHHHHHHHHHHTTSCCEEEEBTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcc----ccccccCCHHHHHHHHHhcCCCeEEEEecC
Confidence 999999999999999999999987764 34555799999996 22223345778888888 567899999999
Q ss_pred CCcCHHHHHHHHHHHHhcC
Q 041042 233 YNINVNKILKFITAKLFDI 251 (268)
Q Consensus 233 ~~~~i~~~f~~l~~~i~~~ 251 (268)
+|.|++++|++|.+.+.+.
T Consensus 161 ~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 161 NAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999988654
No 67
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=4e-32 Score=213.73 Aligned_cols=162 Identities=16% Similarity=0.207 Sum_probs=142.5
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
..+||+++|++|||||||+++|.++.+...+.+|++..+ .+.+.+++..+.+++|||+|++.+..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 368999999999999999999999998888888887544 5778889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
|||+++..+|+.+..|+..+.... .+.|.++|+||+|+. ..+.+..+++..+++.++++++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 155 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE-----SEREVSSSEGRALAEEWGCPFMETSAKSKTMVDE 155 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG-----GGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc-----ccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHH
Confidence 999999999999999999987764 345557999999962 2233457788899999999999999999999999
Q ss_pred HHHHHHHHHh
Q 041042 240 ILKFITAKLF 249 (268)
Q Consensus 240 ~f~~l~~~i~ 249 (268)
+|++|.+.+.
T Consensus 156 l~~~l~~~~~ 165 (167)
T 1kao_A 156 LFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998774
No 68
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=5.4e-33 Score=230.21 Aligned_cols=168 Identities=23% Similarity=0.329 Sum_probs=150.3
Q ss_pred CCceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 041042 79 DNLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIA 158 (268)
Q Consensus 79 ~~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~ 158 (268)
.....+||+++|.+|||||||+++|+.+.+...+.+|.|.++....+.+++..+.+++|||+|++.+..++..+++++|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 35567999999999999999999988888878888999999998899999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 159 ILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 159 vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
+|+|||+++..+|+.+..|+..+....++.|.|||+||+|+... . ...+...+++..++++++|||++|.|++
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR------K-VKAKSIVFHRKKNLQYYDISAKSNYNFE 163 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSC------S-SCGGGCCHHHHHTCEEEECBGGGTBTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccc------c-ccHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999999999998777777899999997321 1 1225567888899999999999999999
Q ss_pred HHHHHHHHHHhcCcc
Q 041042 239 KILKFITAKLFDIPW 253 (268)
Q Consensus 239 ~~f~~l~~~i~~~~~ 253 (268)
++|++|.+.+...+.
T Consensus 164 ~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 164 KPFLWLARKLIGDPN 178 (221)
T ss_dssp HHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHhCcc
Confidence 999999999988764
No 69
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=7.2e-32 Score=219.14 Aligned_cols=164 Identities=18% Similarity=0.243 Sum_probs=134.4
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcC--CCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccc-cccchhhhhcCCcE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGD--EKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK-AQDHLPVACKDSIA 158 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~a~~ 158 (268)
..+||+++|++|||||||+++|++. .|... .+++|.++..+.+.+++..+.+.+|||+|++. +..+...|++.+|+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 4699999999999999999999963 34433 34578888888889999999999999999877 56678889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcC
Q 041042 159 ILFMFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNIN 236 (268)
Q Consensus 159 vilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 236 (268)
+++|||+++.+||+.+..|+..+.... .+.|.|+||||+|+. ..+.+..+++..++..++++|++|||++|.|
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~-----~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~ 158 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-----RXREVSVSEGRAXAVVFDXKFIETSAAVQHN 158 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh-----ccccccHHHHHHHHHHhCCceEEeccccCCC
Confidence 999999999999999999998887653 345557999999972 1233446778889999999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 041042 237 VNKILKFITAKLFDI 251 (268)
Q Consensus 237 i~~~f~~l~~~i~~~ 251 (268)
|+++|+++++.+...
T Consensus 159 v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 159 VKELFEGIVRQVRLR 173 (192)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988543
No 70
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.6e-32 Score=220.62 Aligned_cols=169 Identities=20% Similarity=0.297 Sum_probs=141.1
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
...+||+++|.+|||||||+++|.++.+...+.+|++.++. ..+.+++..+.+.+|||+|++++..++..+++++|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 45689999999999999999999999998888888887765 44778899999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHHhCCCCceEEEEeCCCCCCCCCccc----------hhchHHHHHHHHHHhCC-eEEE
Q 041042 161 FMFDLTSRCTLKSV-IRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDL----------QWTIASQARAYAKALNA-TLFF 228 (268)
Q Consensus 161 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~----------~~~~~~~~~~~~~~~~~-~~~~ 228 (268)
+|||+++.++|+.+ ..|+..+....++.|++||+||+|+. .... +.+..+++..+++..++ ++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLR---SDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLE 178 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGG---GCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhh---ccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEE
Confidence 99999999999999 68999998877777778999999972 2110 12346788899999998 8999
Q ss_pred EcCCCCcCHHHHHHHHHHHHhcCcc
Q 041042 229 SSATYNINVNKILKFITAKLFDIPW 253 (268)
Q Consensus 229 ~Sa~~~~~i~~~f~~l~~~i~~~~~ 253 (268)
|||++|.|++++|++|.+.+++...
T Consensus 179 ~SA~~g~gi~el~~~l~~~i~~~~~ 203 (207)
T 2fv8_A 179 CSAKTKEGVREVFETATRAALQKRY 203 (207)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHSCCC
T ss_pred eeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999887653
No 71
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=9.8e-33 Score=221.00 Aligned_cols=165 Identities=20% Similarity=0.312 Sum_probs=127.9
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
...+||+++|++|||||||+++|.++.+...+.+|++..+. ..+.+++..+.+++|||+|+++|..++..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 34699999999999999999999999988888888876654 34556778888999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCCccch---------hchHHHHHHHHHHhCC-eEEEE
Q 041042 161 FMFDLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQ---------WTIASQARAYAKALNA-TLFFS 229 (268)
Q Consensus 161 lv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~ 229 (268)
+|||++++.+|+.+. .|+..+....++.|++||+||+|+. +... .+..+++.++++.+++ ++++|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 160 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLR----DDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIEC 160 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH----TCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhh----cCcccccccccCCCCCHHHHHHHHHHcCCCEEEEE
Confidence 999999999999998 7999999887766778999999962 1111 1256788999999997 99999
Q ss_pred cCCCCcCHHHHHHHHHHHHhc
Q 041042 230 SATYNINVNKILKFITAKLFD 250 (268)
Q Consensus 230 Sa~~~~~i~~~f~~l~~~i~~ 250 (268)
||++|.|++++|++|++.+++
T Consensus 161 Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 161 SSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp CTTTCTTHHHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999998764
No 72
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=2.1e-31 Score=209.19 Aligned_cols=161 Identities=13% Similarity=0.211 Sum_probs=142.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
.+||+++|.+|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+.+|||+|++++..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 58999999999999999999999988888888877554 46777889999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhCC--CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 163 FDLTSRCTLKSVIRWYQQARKCNQ--TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
||+++..+++.+..|+..+..... +.|.++|+||+|+. . .....+++.++++.++++++++||++|.|++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~---~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 155 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA---A---RTVESRQAQDLARSYGIPYIETSAKTRQGVEDA 155 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS---C---CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhh---h---cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence 999999999999999999887743 55667999999972 1 334577888999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 041042 241 LKFITAKLFD 250 (268)
Q Consensus 241 f~~l~~~i~~ 250 (268)
|++|.+.+.+
T Consensus 156 ~~~l~~~~~~ 165 (166)
T 2ce2_X 156 FYTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 73
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=1.3e-32 Score=224.96 Aligned_cols=168 Identities=11% Similarity=0.222 Sum_probs=110.9
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcC--CCCCCCCCCcceeeEEEEEEECCe--EEEEEEEeCCCccccccchhhhhcCC
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGD--EKEQGGSPGEGLNMMDKTLLVRGA--RISYSIWEVTGDAKAQDHLPVACKDS 156 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~a 156 (268)
...+||+|+|++|||||||+++|.++ .+...+.+|++.++....+.+++. .+.+++|||+|++.+..++..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46799999999999999999999999 888888999998888888888887 89999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhCC----CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCC
Q 041042 157 IAILFMFDLTSRCTLKSVIRWYQQARKCNQ----TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSAT 232 (268)
Q Consensus 157 ~~vilv~D~~~~~s~~~~~~~~~~i~~~~~----~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 232 (268)
|++|+|||+++..+|+.+..|+..+..... +.|++||+||+|+. ...+.+..+++.++++.++++++++||+
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~----~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 173 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP----PQRHQVRLDMAQDWATTNTLDFFDVSAN 173 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-----------CCCHHHHHHHHHHTTCEEEECCC-
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc----hhhccCCHHHHHHHHHHcCCEEEEeccC
Confidence 999999999999999999999999998865 44557999999972 1023345788999999999999999999
Q ss_pred C-CcCHHHHHHHHHHHHhcCc
Q 041042 233 Y-NINVNKILKFITAKLFDIP 252 (268)
Q Consensus 233 ~-~~~i~~~f~~l~~~i~~~~ 252 (268)
+ |.|++++|++|.+.+.+..
T Consensus 174 ~~~~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 174 PPGKDADAPFLSIATTFYRNY 194 (208)
T ss_dssp ------CHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHH
Confidence 9 9999999999999887654
No 74
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=7.5e-32 Score=220.97 Aligned_cols=165 Identities=21% Similarity=0.280 Sum_probs=140.1
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+++|.+|||||||+++|.++.+...+.+|++. .....+.+++..+.+++|||+|++.|..++..+++++|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE-EEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc-eeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 455799999999999999999999999998888888864 4456778889999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCCccc----------hhchHHHHHHHHHHhCC-eEE
Q 041042 160 LFMFDLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLPIDL----------QWTIASQARAYAKALNA-TLF 227 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~----------~~~~~~~~~~~~~~~~~-~~~ 227 (268)
|+|||+++..+|+.+. .|+..+....++.|.+||+||+|+. .... +.+..+++..+++..++ +++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR---DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 182 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHH---TCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhc---cchhhhhhhhccccccccHHHHHHHHHhcCCcEEE
Confidence 9999999999999997 8999999888677778999999972 1111 11446788899999986 599
Q ss_pred EEcCCCCcCHHHHHHHHHHHH
Q 041042 228 FSSATYNINVNKILKFITAKL 248 (268)
Q Consensus 228 ~~Sa~~~~~i~~~f~~l~~~i 248 (268)
+|||++|.||+++|++|.+.+
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 183 ECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp ECCTTTCTTHHHHHHHHHHTT
T ss_pred EeeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998865
No 75
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=1.2e-31 Score=217.73 Aligned_cols=166 Identities=16% Similarity=0.198 Sum_probs=144.4
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
...+||+++|.+|||||||+++|.++.+...+.+|++.++. ..+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 34699999999999999999999999988888888886654 56677888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhC---CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCH
Q 041042 161 FMFDLTSRCTLKSVIRWYQQARKCN---QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINV 237 (268)
Q Consensus 161 lv~D~~~~~s~~~~~~~~~~i~~~~---~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 237 (268)
+|||+++..+|+.+..|+..+.... ++.|++||+||+|+. ...+..+++..+++.++++++++||++|.|+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET------QREVDTREAQAVAQEWKCAFMETSAKMNYNV 158 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCS------SCSSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCC------ccccCHHHHHHHHHHhCCeEEEEecCCCCCH
Confidence 9999999999999999988877653 245667999999972 1334467888899999999999999999999
Q ss_pred HHHHHHHHHHHhcCcc
Q 041042 238 NKILKFITAKLFDIPW 253 (268)
Q Consensus 238 ~~~f~~l~~~i~~~~~ 253 (268)
+++|++|++.+.+...
T Consensus 159 ~~l~~~l~~~~~~~~~ 174 (199)
T 2gf0_A 159 KELFQELLTLETRRNM 174 (199)
T ss_dssp HHHHHHHHHHCSSSCE
T ss_pred HHHHHHHHHHHhhhhc
Confidence 9999999998877653
No 76
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=1.3e-31 Score=211.92 Aligned_cols=163 Identities=17% Similarity=0.244 Sum_probs=141.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
.+||+++|.+|||||||+++|.++.+...+.+|++.++. ..+..++..+.+++|||+|++++..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 589999999999999999999999988888888886654 5567788889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhC---CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 163 FDLTSRCTLKSVIRWYQQARKCN---QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~~---~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
||+++.++++.+..|+..+.+.. ++.|+++|+||+|+. ..+.+..+++..+++.++++++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES-----PSREVQSSEAEALARTWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG-----GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc-----cccccCHHHHHHHHHHhCCeEEEecCCCCcCHHH
Confidence 99999999999999998887753 355668999999972 1223446778889999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 041042 240 ILKFITAKLFDI 251 (268)
Q Consensus 240 ~f~~l~~~i~~~ 251 (268)
+|++|.+.+...
T Consensus 157 l~~~l~~~~~~~ 168 (172)
T 2erx_A 157 LFQELLNLEKRR 168 (172)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHhhh
Confidence 999999876554
No 77
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=1.6e-31 Score=217.26 Aligned_cols=165 Identities=13% Similarity=0.197 Sum_probs=143.2
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+++|++|||||||+++|.++.+...+.+|++.++ ...+.+++..+.+++|||+|++. ..++..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 34579999999999999999999999999888899988665 46678899999999999999988 77889999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCc-C
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNI-N 236 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~ 236 (268)
|+|||++++++|+.+..|+..+.... .+.|++||+||+|+. ..+.+..+++..+++.+++++++|||++|. |
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~g 177 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD-----HSRQVSTEEGEKLATELACAFYECSACTGEGN 177 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG-----GGCCSCHHHHHHHHHHHTSEEEECCTTTCTTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc-----cccccCHHHHHHHHHHhCCeEEEECCCcCCcC
Confidence 99999999999999999999988753 355567999999972 123345788899999999999999999999 9
Q ss_pred HHHHHHHHHHHHhcC
Q 041042 237 VNKILKFITAKLFDI 251 (268)
Q Consensus 237 i~~~f~~l~~~i~~~ 251 (268)
++++|++|++.+.+.
T Consensus 178 i~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 178 ITEIFYELCREVRRR 192 (196)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988654
No 78
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.98 E-value=8.3e-32 Score=222.38 Aligned_cols=171 Identities=21% Similarity=0.255 Sum_probs=146.0
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECC-eEEEEEEEeCCCccccccchhhhhcCCcE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRG-ARISYSIWEVTGDAKAQDHLPVACKDSIA 158 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~ 158 (268)
....+||+|+|.+|||||||+++|+++.+...+.+|++.++....+...+ ..+.+.+|||+|++.+..++..+++++|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 45679999999999999999999999998888888888887766665543 44889999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhCCC-CceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCH
Q 041042 159 ILFMFDLTSRCTLKSVIRWYQQARKCNQT-AIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINV 237 (268)
Q Consensus 159 vilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 237 (268)
+|+|||+++..+|+.+..|+..+...... .|.+||+||+|+. ....+..+++..+++..+++++++||++|.|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 162 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK-----NRQKISKKLVMEVLKGKNYEYFEISAKTAHNF 162 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC---------CCHHHHHHHTTTCCCEEEEEBTTTTBTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-----cccccCHHHHHHHHHHcCCcEEEEecCCCCCH
Confidence 99999999999999999999999887655 4557999999972 22345577888999999999999999999999
Q ss_pred HHHHHHHHHHHhcCccch
Q 041042 238 NKILKFITAKLFDIPWTL 255 (268)
Q Consensus 238 ~~~f~~l~~~i~~~~~~~ 255 (268)
+++|++|.+.+.+.....
T Consensus 163 ~~l~~~l~~~~~~~~~~~ 180 (218)
T 4djt_A 163 GLPFLHLARIFTGRPDLI 180 (218)
T ss_dssp THHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHHhcccccc
Confidence 999999999998876433
No 79
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.98 E-value=1.7e-31 Score=216.90 Aligned_cols=167 Identities=14% Similarity=0.152 Sum_probs=129.8
Q ss_pred CCceeEEEEEEcCCCChHHHHHHHHhcCCCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 041042 79 DNLVALKISLLGDCHIGKTSFLEKYVGDEKEQ-GGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSI 157 (268)
Q Consensus 79 ~~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~ 157 (268)
+....+||+|+|++|||||||+++|.++.+.. .+.+|+|..+. .+ ++..+.+++|||+|++++..++..+++++|
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 88 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TF--EKGRVAFTVFDMGGAKKFRGLWETYYDNID 88 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EE--EETTEEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EE--EeCCEEEEEEECCCCHhHHHHHHHHHhcCC
Confidence 35567999999999999999999999999888 78899885443 33 345577999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC---------CCCceEEEEeCCCCCCCCCccchhch-HHH-HHHHHHHhCCeE
Q 041042 158 AILFMFDLTSRCTLKSVIRWYQQARKCN---------QTAIPIIIGTKFDDFIQLPIDLQWTI-ASQ-ARAYAKALNATL 226 (268)
Q Consensus 158 ~vilv~D~~~~~s~~~~~~~~~~i~~~~---------~~~~~ilvgnK~Dl~~~~~~~~~~~~-~~~-~~~~~~~~~~~~ 226 (268)
++|+|||+++.++|+.+..|+..+.... .+.|.|||+||+|+... ...... ... ...+++..++++
T Consensus 89 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~ 165 (199)
T 4bas_A 89 AVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA---KTAAELVEILDLTTLMGDHPFVI 165 (199)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC---CCHHHHHHHHTHHHHHTTSCEEE
T ss_pred EEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC---CCHHHHHHHhcchhhccCCeeEE
Confidence 9999999999999999999998886641 14566799999997322 111111 111 222235678899
Q ss_pred EEEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 227 FFSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 227 ~~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
++|||++|.||+++|++|++.+.+..
T Consensus 166 ~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 166 FASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred EEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999887654
No 80
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=2.3e-32 Score=221.40 Aligned_cols=165 Identities=15% Similarity=0.105 Sum_probs=138.9
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCC-----------CCCCcceeeEEEEE-EECCeEEEEEEEeCCCcccccc
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQG-----------GSPGEGLNMMDKTL-LVRGARISYSIWEVTGDAKAQD 147 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~-----------~~~t~~~~~~~~~~-~~~~~~~~l~i~Dt~G~~~~~~ 147 (268)
....+||+++|++|||||||++.+.+ .+... +.+|++.++....+ .+++..+.+++|||+|+++|..
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 56689999999999999999965554 44444 44577777776666 6788899999999999999999
Q ss_pred chhhhhcCCcEEEEEEeCC------ChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHH
Q 041042 148 HLPVACKDSIAILFMFDLT------SRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKA 221 (268)
Q Consensus 148 ~~~~~~~~a~~vilv~D~~------~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~ 221 (268)
++..+++++|++|+|||++ +.++|+.+..|+.++.....+.|.+||+||+|+.. .+..+++.++++.
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~-------~~~~~~~~~~~~~ 162 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD-------ALPVEMVRAVVDP 162 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT-------CCCHHHHHHHHCT
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc-------ccCHHHHHHHHHh
Confidence 9999999999999999999 67888999999988854445566689999999731 2557888999999
Q ss_pred hCC-eEEEEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 222 LNA-TLFFSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 222 ~~~-~~~~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
+++ +++++||++|.|++++|++|++.+.+..
T Consensus 163 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 163 EGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp TCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 999 9999999999999999999999887654
No 81
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.2e-33 Score=230.46 Aligned_cols=167 Identities=19% Similarity=0.358 Sum_probs=138.8
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|.+|||||||+++|.++.+...+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 45679999999999999999999999998888888889899889999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
|+|||+++.++|+.+..|+..+........| +||+||+|+. ..+.+..+++..+++.++++++++||++|.||+
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~ 184 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT-----TKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 184 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-------CCCCSCC-CHHHHTTTCCBCCCCC---HHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC-----ccccCCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 9999999999999999999999887654555 6999999973 112233456788899999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 041042 239 KILKFITAKLFDI 251 (268)
Q Consensus 239 ~~f~~l~~~i~~~ 251 (268)
++|++|++.+.+.
T Consensus 185 ~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 185 QSFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999998877543
No 82
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=6.4e-32 Score=217.70 Aligned_cols=166 Identities=16% Similarity=0.293 Sum_probs=127.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcC--CCCCCCCCCcceeeEEEEEEE---CCeEEEEEEEeCCCccccccchhhhhcCCc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGD--EKEQGGSPGEGLNMMDKTLLV---RGARISYSIWEVTGDAKAQDHLPVACKDSI 157 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~ 157 (268)
.+||+++|++|||||||+++|.+. .+...+.+|+|.++..+.+.+ ++..+.+++|||+|+++|..++..|+++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 489999999999999999999985 566678899999887766654 346788999999999999999999999999
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhc---hHHHHHHHHHHhCCe----EEEE
Q 041042 158 AILFMFDLTSR-CTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWT---IASQARAYAKALNAT----LFFS 229 (268)
Q Consensus 158 ~vilv~D~~~~-~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~ 229 (268)
++++|||+++. .+|+.+..|+..+....++.|.+|||||+|+. +. ... ..+.+..+++.++++ ++++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVS----DE-KQRKACMSKITKELLNKRGFPAIRDYHFV 156 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGC----CH-HHHHHHHHHHHHHTTTCTTSCEEEEEEEC
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcc----cc-hhhHHHHHHHHHHHHHhcCCcchhheEEE
Confidence 99999999997 58999999999998876666667999999962 21 111 135566777778887 9999
Q ss_pred cCCCCc-CHHHHHHHHHHHHhcCcc
Q 041042 230 SATYNI-NVNKILKFITAKLFDIPW 253 (268)
Q Consensus 230 Sa~~~~-~i~~~f~~l~~~i~~~~~ 253 (268)
||++|. +++++++.|.+.+.+.++
T Consensus 157 Sa~~~~~~~~~l~~~i~~~~~~~~~ 181 (184)
T 2zej_A 157 NATEESDALAKLRKTIINESLNFKI 181 (184)
T ss_dssp CTTSCCHHHHHHHHHHHHHHHCC--
T ss_pred ecccCchhHHHHHHHHHHHHhcccc
Confidence 999996 999999999999887664
No 83
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=1e-31 Score=218.60 Aligned_cols=163 Identities=17% Similarity=0.174 Sum_probs=128.8
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEE--EC-CeEEEEEEEeCCCccccccch---hhhh
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLL--VR-GARISYSIWEVTGDAKAQDHL---PVAC 153 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~--~~-~~~~~l~i~Dt~G~~~~~~~~---~~~~ 153 (268)
....+||+++|++|||||||++++.+. +... +|++.++..+.+. +. +..+.+++|||+|+++|..+. ..++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 555799999999999999999988775 3222 4555555444333 33 677889999999999998877 8999
Q ss_pred cCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCcc-----chhchHHHHHHHHH----Hh
Q 041042 154 KDSIAILFMFDLTSR--CTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPID-----LQWTIASQARAYAK----AL 222 (268)
Q Consensus 154 ~~a~~vilv~D~~~~--~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~-----~~~~~~~~~~~~~~----~~ 222 (268)
+++|++|+|||+++. ++++.+..|+..+....++.|.+|||||+|| +.++ .+.+..+++..+++ ..
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDG---LSDDHKIETQRDIHQRANDDLADAGLEKL 170 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGG---SCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEecccc---CchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence 999999999999997 7788888888888766767777899999997 3321 23344667788888 77
Q ss_pred CCeEEEEcCCCCcCHHHHHHHHHHHHh
Q 041042 223 NATLFFSSATYNINVNKILKFITAKLF 249 (268)
Q Consensus 223 ~~~~~~~Sa~~~~~i~~~f~~l~~~i~ 249 (268)
+++|++|||++ .||+++|+.+++.++
T Consensus 171 ~~~~~e~Sa~~-~~v~~~f~~l~~~li 196 (196)
T 3llu_A 171 HLSFYLTSIYD-HSIFEAFSKVVQKLI 196 (196)
T ss_dssp CEEEEEECTTS-THHHHHHHHHHHHTC
T ss_pred CcceEEEEech-hhHHHHHHHHHHHhC
Confidence 89999999999 999999999998763
No 84
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=210.30 Aligned_cols=161 Identities=13% Similarity=0.157 Sum_probs=128.4
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCC-CCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDE-KEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIA 158 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~ 158 (268)
....+||+++|.+|||||||+++|.++. +...+.+|++. ....+.+++ +.+.+|||+|++.+..++..+++++|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 3446999999999999999999999987 66778888874 445566665 678999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC----CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHH-----HhCCeEEEE
Q 041042 159 ILFMFDLTSRCTLKSVIRWYQQARKCN----QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAK-----ALNATLFFS 229 (268)
Q Consensus 159 vilv~D~~~~~s~~~~~~~~~~i~~~~----~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 229 (268)
+|+|||+++.++|+.+..|+..+.... .+.|.+||+||+|+.. ....+++.+++. ..++++++|
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD-------AVTSVKVSQLLCLENIKDKPWHICAS 166 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT-------CCCHHHHHHHHTGGGCCSSCEEEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc-------CCCHHHHHHHhChhhccCCceEEEEc
Confidence 999999999999999999999887763 3455679999999731 112344444442 246789999
Q ss_pred cCCCCcCHHHHHHHHHHHHhcC
Q 041042 230 SATYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 230 Sa~~~~~i~~~f~~l~~~i~~~ 251 (268)
||++|.||+++|++|.+.+.+.
T Consensus 167 Sa~~~~gi~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 167 DAIKGEGLQEGVDWLQDQIQTV 188 (190)
T ss_dssp BTTTTBTHHHHHHHHHHHC---
T ss_pred cCCCCcCHHHHHHHHHHHHHHh
Confidence 9999999999999999887543
No 85
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=3e-31 Score=214.33 Aligned_cols=165 Identities=15% Similarity=0.213 Sum_probs=129.0
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|.+|||||||+++|.++.+...+.+|++.++.. +. ...+.+++|||+|++++..++..+++++|++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--IT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 3457999999999999999999999999988888999877642 33 3356789999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHh--CCCCceEEEEeCCCCCCCCCccchhch-HHHHHHHHHHhCCeEEEEcCCCCcC
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKC--NQTAIPIIIGTKFDDFIQLPIDLQWTI-ASQARAYAKALNATLFFSSATYNIN 236 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~~ 236 (268)
|+|||+++.++|+.+..|+..+... ..+.|++||+||+|+.... ..... ......++...++++++|||++|.|
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 171 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL---DEKELIEKMNLSAIQDREICCYSISCKEKDN 171 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC---CHHHHHHHhChhhhccCCeeEEEEECCCCCC
Confidence 9999999999999999999888664 2455667999999973211 11111 1111111223456899999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 041042 237 VNKILKFITAKLFDI 251 (268)
Q Consensus 237 i~~~f~~l~~~i~~~ 251 (268)
++++|++|.+.+...
T Consensus 172 v~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 172 IDITLQWLIQHSKSR 186 (188)
T ss_dssp HHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999877543
No 86
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.5e-30 Score=209.85 Aligned_cols=161 Identities=15% Similarity=0.156 Sum_probs=125.1
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
..+||+++|.+|||||||+++|.++.+. .+.+|++.+. ..+.+++ +.+++|||+|++++..++..+++++|++|+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 4699999999999999999999998876 6777887543 4555665 678999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHh--CCCCceEEEEeCCCCCCCCCccchhchHHHHHHHH-----HHhCCeEEEEcCCCC
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKC--NQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYA-----KALNATLFFSSATYN 234 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~ 234 (268)
|||+++.++|+.+..|+..+... ..+.|.++|+||+|+... ...+++.+.. +..++++++|||++|
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g 162 (187)
T 1zj6_A 90 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC-------MTVAEISQFLKLTSIKDHQWHIQACCALTG 162 (187)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC-------CCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred EEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC-------CCHHHHHHHhChhhhcCCCcEEEEccCCCC
Confidence 99999999999999999998775 245566799999997321 1122333322 235678999999999
Q ss_pred cCHHHHHHHHHHHHhcCccc
Q 041042 235 INVNKILKFITAKLFDIPWT 254 (268)
Q Consensus 235 ~~i~~~f~~l~~~i~~~~~~ 254 (268)
.|++++|++|++.+...+..
T Consensus 163 ~gi~~l~~~l~~~~~~~~~~ 182 (187)
T 1zj6_A 163 EGLCQGLEWMMSRLKIRLEH 182 (187)
T ss_dssp BTHHHHHHHHHHHHCC----
T ss_pred cCHHHHHHHHHHHHHHHhhh
Confidence 99999999999998776543
No 87
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=2.2e-30 Score=211.30 Aligned_cols=156 Identities=15% Similarity=0.152 Sum_probs=121.2
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
...+||+++|++|||||||+++|.++.+. .+.+|++.+. ..+.+++ +.+++|||+|++.++.++..+++++|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 34589999999999999999999998874 5778887653 5666776 67999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHh--CCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHH-----------------
Q 041042 161 FMFDLTSRCTLKSVIRWYQQARKC--NQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKA----------------- 221 (268)
Q Consensus 161 lv~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~----------------- 221 (268)
+|||+++.++|+.+..|+..+.+. ..+.|.++|+||+|+.. .+..+++.+++..
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE-------AISEERLREMFGLYGQTTGKGSVSLKELNA 170 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT-------CCCHHHHHHHHTCTTTCCCSSCCCTTTCCS
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc-------cCCHHHHHHHhCcccccccccccccccccC
Confidence 999999999999999999988764 23455679999999732 2335566666542
Q ss_pred hCCeEEEEcCCCCcCHHHHHHHHHHHH
Q 041042 222 LNATLFFSSATYNINVNKILKFITAKL 248 (268)
Q Consensus 222 ~~~~~~~~Sa~~~~~i~~~f~~l~~~i 248 (268)
.++++++|||++|.||+++|++|.+.+
T Consensus 171 ~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 171 RPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346899999999999999999998643
No 88
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=9.3e-31 Score=206.01 Aligned_cols=161 Identities=18% Similarity=0.179 Sum_probs=122.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
+||+++|++|||||||+++|.++.+. .+.||++.. ...+.. ..+.+++|||+|++.+..++..+++++|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS-CCCCCSSCC--EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC-cccCcCcee--EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999998875 467788743 334443 4467999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHh--CCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHH
Q 041042 164 DLTSRCTLKSVIRWYQQARKC--NQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKIL 241 (268)
Q Consensus 164 D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f 241 (268)
|++++++|+.+..|+..+... ..+.|++||+||+|+..... ...........+++..++++++|||++|.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC--HHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 999999999999999888654 23455579999999732110 01111111112223345679999999999999999
Q ss_pred HHHHHHHhcC
Q 041042 242 KFITAKLFDI 251 (268)
Q Consensus 242 ~~l~~~i~~~ 251 (268)
++|.+.+.++
T Consensus 154 ~~l~~~i~~~ 163 (164)
T 1r8s_A 154 DWLSNQLRNQ 163 (164)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHhhc
Confidence 9999887543
No 89
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=3.5e-30 Score=203.92 Aligned_cols=162 Identities=17% Similarity=0.208 Sum_probs=128.3
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
..+||+++|++|||||||+++|.++.+. .+.+|++... ..+.++ .+.+++|||+|++.+..++..+++++|++|+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 3599999999999999999999998874 5677877543 455555 4678999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhch-HHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTI-ASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
|||+++.++|+.+..|+..+.... .+.|++||+||+|+... ...... ......+++..+++++++||++|.|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA---MTSSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC---CCHHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 999999999999999988876542 35555799999997321 111111 222223344557789999999999999
Q ss_pred HHHHHHHHHHhcC
Q 041042 239 KILKFITAKLFDI 251 (268)
Q Consensus 239 ~~f~~l~~~i~~~ 251 (268)
++|++|.+.+.+.
T Consensus 158 ~l~~~l~~~i~~~ 170 (171)
T 1upt_A 158 EAMEWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988654
No 90
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=6.3e-31 Score=211.10 Aligned_cols=156 Identities=15% Similarity=0.185 Sum_probs=124.6
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+++|.+|||||||+++|.++.+ ..+.+|+|.+. ..+.+++ +.+.+|||+|++++..++..+++++|++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 92 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFV 92 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 44569999999999999999999999988 56777887554 4555555 6789999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHh--CCCCceEEEEeCCCCCCCCCccchhchHHHHHHHH-----HHhCCeEEEEcCC
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKC--NQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYA-----KALNATLFFSSAT 232 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~ 232 (268)
|+|||+++.++|+.+..|+..+... ..+.|++||+||+|+... ...+++.+.. +..++++++|||+
T Consensus 93 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 165 (181)
T 2h17_A 93 IVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC-------MTVAEISQFLKLTSIKDHQWHIQACCAL 165 (181)
T ss_dssp EEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-------CCHHHHHHHTTGGGCCSSCEEEEECBTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC-------CCHHHHHHHhCcccccCCceEEEEccCC
Confidence 9999999999999999999888765 245556799999997321 1122222222 3346689999999
Q ss_pred CCcCHHHHHHHHHHH
Q 041042 233 YNINVNKILKFITAK 247 (268)
Q Consensus 233 ~~~~i~~~f~~l~~~ 247 (268)
+|.|++++|++|++.
T Consensus 166 ~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 166 TGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTBTHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHhh
Confidence 999999999998764
No 91
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=7.7e-30 Score=206.66 Aligned_cols=155 Identities=15% Similarity=0.143 Sum_probs=126.2
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
...+||+++|++|||||||+++|.++.+. .+.+|++.+ ...+.+++ +.+++|||+|++.++.++..+++++|++|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 34589999999999999999999998874 577787764 45666776 77899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHh--CCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHH------------hCCeE
Q 041042 161 FMFDLTSRCTLKSVIRWYQQARKC--NQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKA------------LNATL 226 (268)
Q Consensus 161 lv~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 226 (268)
+|||+++.++|+.+..|+..+.+. ..+.|.++|+||+|+.. .+..+++.+++.. .++++
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN-------AVSEAELRSALGLLNTTGSQRIEGQRPVEV 168 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT-------CCCHHHHHHHTTCSSCCC---CCSSCCEEE
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC-------CCCHHHHHHHhCCccccccccccccceEEE
Confidence 999999999999999999988764 23455579999999732 2234455554432 45789
Q ss_pred EEEcCCCCcCHHHHHHHHHHH
Q 041042 227 FFSSATYNINVNKILKFITAK 247 (268)
Q Consensus 227 ~~~Sa~~~~~i~~~f~~l~~~ 247 (268)
++|||++|.|++++|++|++.
T Consensus 169 ~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 169 FMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEeECCcCCCHHHHHHHHHhh
Confidence 999999999999999999764
No 92
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=4.8e-29 Score=203.25 Aligned_cols=165 Identities=23% Similarity=0.449 Sum_probs=143.5
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
..+||+++|++|||||||+++|.+..+...+.+|+|.++....+.+++..+.+++||++|++.+..++..+++.++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 46999999999999999999999999988888999999988999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCCC-CceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCNQT-AIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
|||+++..+|+++..|+..+...... .+.++|+||+|+. .......++++.++...++.++++||+++.|++++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~-----~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l 158 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR-----HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEA 158 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc-----cccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999888776543 4446999999972 12233467788999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 041042 241 LKFITAKLFDI 251 (268)
Q Consensus 241 f~~l~~~i~~~ 251 (268)
|+.|.+.+.+.
T Consensus 159 ~~~l~~~~~~~ 169 (199)
T 2f9l_A 159 FKNILTEIYRI 169 (199)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888653
No 93
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=7.7e-30 Score=205.23 Aligned_cols=159 Identities=20% Similarity=0.206 Sum_probs=128.4
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
...+||+++|++|||||||+++|.++. ...+.+|++.. ...+.+++ +.+++|||+|++++..++..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 346999999999999999999999988 67788888854 34555554 67899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHh--CCCCceEEEEeCCCCCCCCCccchhchHHHHHHHH-----HHhCCeEEEEcCCC
Q 041042 161 FMFDLTSRCTLKSVIRWYQQARKC--NQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYA-----KALNATLFFSSATY 233 (268)
Q Consensus 161 lv~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~ 233 (268)
+|||++++++|+.+..|+..+... ..+.|+++|+||+|+... . ..+++.+.. +..+++++++||++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA---L----SCNAIQEALELDSIRSHHWRIQGCSAVT 163 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---C----CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC---C----CHHHHHHHhChhhccCCceEEEEeeCCC
Confidence 999999999999999999888765 234555799999997321 1 112222221 23567899999999
Q ss_pred CcCHHHHHHHHHHHHhcC
Q 041042 234 NINVNKILKFITAKLFDI 251 (268)
Q Consensus 234 ~~~i~~~f~~l~~~i~~~ 251 (268)
|.|++++|++|.+.+.+.
T Consensus 164 ~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 164 GEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp CTTHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999988765
No 94
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=7.6e-29 Score=201.05 Aligned_cols=164 Identities=21% Similarity=0.399 Sum_probs=145.6
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|++|||||||+++|.+..+...+.+|++.++....+.+++..+.+++||++|++++..++..+++.++++
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 105 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence 45579999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCC-CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCNQ-TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
++|||+++..+|+++..|+..+..... ..+.++|+||+||. .......++++.++...++.++++||+++.|++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~-----~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~ 180 (191)
T 1oix_A 106 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR-----HLRAVPTDEARAFAEKNGLSFIETSALDSTNVE 180 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-----cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999999988877654 34446999999972 122334677899999999999999999999999
Q ss_pred HHHHHHHHHH
Q 041042 239 KILKFITAKL 248 (268)
Q Consensus 239 ~~f~~l~~~i 248 (268)
++|+.|.+.+
T Consensus 181 ~l~~~l~~~i 190 (191)
T 1oix_A 181 AAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 95
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.97 E-value=1.9e-29 Score=220.64 Aligned_cols=168 Identities=21% Similarity=0.292 Sum_probs=145.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
.+||+++|.+|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+++|||+|++.+..++..+++++|++|+|
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 233 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 233 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence 48999999999999999999999999888889887655 46778899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCCc-------cchhchHHHHHHHHHHhCC-eEEEEcCCC
Q 041042 163 FDLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLPI-------DLQWTIASQARAYAKALNA-TLFFSSATY 233 (268)
Q Consensus 163 ~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 233 (268)
||+++..+|+.+. .|+..+....++.|.+||+||+|+...... ..+.+..+++..+++..++ ++++|||++
T Consensus 234 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 313 (332)
T 2wkq_A 234 FSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 313 (332)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCC
Confidence 9999999999997 799999888776677899999997211000 0123447889999999997 999999999
Q ss_pred CcCHHHHHHHHHHHHhcC
Q 041042 234 NINVNKILKFITAKLFDI 251 (268)
Q Consensus 234 ~~~i~~~f~~l~~~i~~~ 251 (268)
|.|++++|+.|.+.+++.
T Consensus 314 ~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 314 QRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CTTHHHHHHHHHHHHHC-
T ss_pred CcCHHHHHHHHHHHHhcC
Confidence 999999999999988764
No 96
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=2e-30 Score=208.44 Aligned_cols=159 Identities=16% Similarity=0.192 Sum_probs=123.4
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
...+||+++|++|||||||+++|.++.+ ..+.+|+|.+ .+.+.++ .+.+++|||+|++.+..++..+++++|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 3469999999999999999999998865 4566777744 3455566 467899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHh--CCCCceEEEEeCCCCCCCCCccchhchHHHHHHH-----HHHhCCeEEEEcCCC
Q 041042 161 FMFDLTSRCTLKSVIRWYQQARKC--NQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAY-----AKALNATLFFSSATY 233 (268)
Q Consensus 161 lv~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~ 233 (268)
+|||+++.++|+.+..|+..+... ..+.|.+||+||+|+.... . .+++.+. +...++++++|||++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA------P-ASEIAEGLNLHTIRDRVWQIQSCSALT 161 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC------C-HHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC------C-HHHHHHHhCchhccCCceEEEEccCCC
Confidence 999999999999999998887543 2345567999999973211 1 1222111 123456899999999
Q ss_pred CcCHHHHHHHHHHHHhcC
Q 041042 234 NINVNKILKFITAKLFDI 251 (268)
Q Consensus 234 ~~~i~~~f~~l~~~i~~~ 251 (268)
|.|++++|++|++.+.+.
T Consensus 162 g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 162 GEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp CTTHHHHHHHHHHTC---
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999877553
No 97
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=4.7e-30 Score=208.29 Aligned_cols=164 Identities=18% Similarity=0.219 Sum_probs=121.0
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+++|++|||||||+++|.++.+. .+.+|++.. ...+..+ .+.+++|||+|++++..++..+++++|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEE--EEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCcee--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 344699999999999999999999988875 456777733 3445444 46799999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCH
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINV 237 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 237 (268)
|+|||+++.++|+.+..|+..+.... .+.|++||+||+|+..... ...........+++..++++++|||++|.|+
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP--VSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC--HHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 99999999999999999998886542 3455579999999732110 0111111111222334567999999999999
Q ss_pred HHHHHHHHHHHhc
Q 041042 238 NKILKFITAKLFD 250 (268)
Q Consensus 238 ~~~f~~l~~~i~~ 250 (268)
+++|++|++.+.+
T Consensus 179 ~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 179 YDGLDWLSHELSK 191 (192)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988754
No 98
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.96 E-value=7e-31 Score=227.76 Aligned_cols=167 Identities=15% Similarity=0.145 Sum_probs=132.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCC---CCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccccc---chhhhhcCCcE
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQ---GGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQD---HLPVACKDSIA 158 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---~~~~~~~~a~~ 158 (268)
||+++|+.|||||||++++.++.+.. .+.+|+|.++.. + +..+++++||||||++|.. ++..||+++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----F-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----E-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----E-ccEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 79999999999999999988764322 367899988753 2 3458899999999999974 46899999999
Q ss_pred EEEEEeCCCh--hhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccc-----hhchHHHHHHHHHH----hCCeEE
Q 041042 159 ILFMFDLTSR--CTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDL-----QWTIASQARAYAKA----LNATLF 227 (268)
Q Consensus 159 vilv~D~~~~--~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~-----~~~~~~~~~~~~~~----~~~~~~ 227 (268)
+|+|||+++. ++++.+..|+..+....++.|++|||||+|| ..++. +.+..++++++++. +++.||
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL---~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~ 152 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDG---LSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFY 152 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCS---SCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEE
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECccc---CchhhhhhHHHHhhHHHHHHHHhhcccccCceEE
Confidence 9999999998 4444455556666666776666799999997 33322 33447788888886 689999
Q ss_pred EEcCCCCcCHHHHHHHHHHHHhcCccchhcccC
Q 041042 228 FSSATYNINVNKILKFITAKLFDIPWTLERNLT 260 (268)
Q Consensus 228 ~~Sa~~~~~i~~~f~~l~~~i~~~~~~~~~~~~ 260 (268)
+|||++ .||.++|..+++.++......+..+.
T Consensus 153 eTSAkd-~nV~eAFs~iv~~li~~~~~le~~L~ 184 (331)
T 3r7w_B 153 LTSIFD-HSIYEAFSRIVQKLIPELSFLENMLD 184 (331)
T ss_dssp CCCSSS-SHHHHHHHHHHTTSSTTHHHHHHHHT
T ss_pred EeccCC-CcHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999998 59999999999999988777666543
No 99
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=3.5e-30 Score=218.42 Aligned_cols=163 Identities=16% Similarity=0.150 Sum_probs=128.6
Q ss_pred CceeEEEEEEcCC---------CChHHHHHHHHhc---CCCCCCCCCCc-ceeeEEEEEE--------------ECCeEE
Q 041042 80 NLVALKISLLGDC---------HIGKTSFLEKYVG---DEKEQGGSPGE-GLNMMDKTLL--------------VRGARI 132 (268)
Q Consensus 80 ~~~~~ki~vlG~~---------~vGKSsLi~~l~~---~~~~~~~~~t~-~~~~~~~~~~--------------~~~~~~ 132 (268)
....+||+|+|++ |||||||+++|++ +.+...+.+|+ +.++..+.+. +++..+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 4456999999999 9999999999999 66777788876 6665443332 467889
Q ss_pred EEEEEe-----------------------CCCccccccchhhhhc---------------------CCcEEEEEEeCCCh
Q 041042 133 SYSIWE-----------------------VTGDAKAQDHLPVACK---------------------DSIAILFMFDLTSR 168 (268)
Q Consensus 133 ~l~i~D-----------------------t~G~~~~~~~~~~~~~---------------------~a~~vilv~D~~~~ 168 (268)
.+++|| ++|+++|..++..+++ +||++|+|||++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 999999 8889999999999988 79999999999998
Q ss_pred --hhHHHHHHHHHHHHHh--CCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHH-hCCeEEEEcCCCCcCHHHHHHH
Q 041042 169 --CTLKSVIRWYQQARKC--NQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKA-LNATLFFSSATYNINVNKILKF 243 (268)
Q Consensus 169 --~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~f~~ 243 (268)
+||+.+..|+..+... ..+.|+||||||+|| ...+.. +++.++++. .++++++|||++|.||+++|++
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl------~~~~~v-~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~ 248 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDE------GVERYI-RDAHTFALSKKNLQVVETSARSNVNVDLAFST 248 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGG------BCHHHH-HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccc------cccHHH-HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHH
Confidence 9999999999998765 245566899999996 222222 577888887 4899999999999999999999
Q ss_pred HHHHHh
Q 041042 244 ITAKLF 249 (268)
Q Consensus 244 l~~~i~ 249 (268)
|++.+.
T Consensus 249 l~~~l~ 254 (255)
T 3c5h_A 249 LVQLID 254 (255)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998764
No 100
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=1.2e-29 Score=204.85 Aligned_cols=164 Identities=18% Similarity=0.181 Sum_probs=127.9
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
...+||+++|++|||||||+++|.++.+. .+.+|++.. ...+.++ .+.+++|||+|++++..++..+++++|++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 34699999999999999999999988875 467787744 3445555 467899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhch-HHHHHHHHHHhCCeEEEEcCCCCcCH
Q 041042 161 FMFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTI-ASQARAYAKALNATLFFSSATYNINV 237 (268)
Q Consensus 161 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~~i 237 (268)
+|||++++++|+.+..|+..+.... .+.|+++|+||+|+.. ....... .......++..++++++|||++|.|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPD---AASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGL 171 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTT---CCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcC---CCCHHHHHHHhChhhccCCceEEEEccCCCccCH
Confidence 9999999999999999988876642 3455579999999732 1111111 11112223345678999999999999
Q ss_pred HHHHHHHHHHHhcCc
Q 041042 238 NKILKFITAKLFDIP 252 (268)
Q Consensus 238 ~~~f~~l~~~i~~~~ 252 (268)
+++|++|.+.+.+..
T Consensus 172 ~~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 172 VEGMDWLVERLREQG 186 (189)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887654
No 101
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=1e-31 Score=219.70 Aligned_cols=167 Identities=22% Similarity=0.301 Sum_probs=141.1
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
...+||+++|.+|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+++|||+|+++|..++..+++++|++|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4569999999999999999999999998888888887555 456677888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCCcc-------chhchHHHHHHHHHHhCC-eEEEEcC
Q 041042 161 FMFDLTSRCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLPID-------LQWTIASQARAYAKALNA-TLFFSSA 231 (268)
Q Consensus 161 lv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa 231 (268)
+|||+++..+|+.+. .|+..+....++.|++||+||+|+....... .+.+..+++..+++..++ ++++|||
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA 186 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
Confidence 999999999999997 8999888776666668999999973211000 013446778889999998 8999999
Q ss_pred CCCcCHHHHHHHHHHHH
Q 041042 232 TYNINVNKILKFITAKL 248 (268)
Q Consensus 232 ~~~~~i~~~f~~l~~~i 248 (268)
++|.|++++|++|++.+
T Consensus 187 ~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 187 LTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999998765
No 102
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=9e-30 Score=204.04 Aligned_cols=157 Identities=20% Similarity=0.251 Sum_probs=122.7
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
..+||+++|++|||||||++++.++.+ ..+.+|++... ..+.+++ +.+.+|||+|++.+..++..+++++|++++
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 469999999999999999999998887 56778888543 4555554 678999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHH-----HHhCCeEEEEcCCCC
Q 041042 162 MFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYA-----KALNATLFFSSATYN 234 (268)
Q Consensus 162 v~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~ 234 (268)
|||+++.++|+.+..|+..+.... .+.|.++|+||+|+... ...+++.+.. ...++++++|||++|
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (183)
T 1moz_A 92 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA-------LSASEVSKELNLVELKDRSWSIVASSAIKG 164 (183)
T ss_dssp EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC-------CCHHHHHHHTTTTTCCSSCEEEEEEBGGGT
T ss_pred EEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC-------CCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence 999999999999999998887653 44555799999997321 1122222222 223457999999999
Q ss_pred cCHHHHHHHHHHHHhc
Q 041042 235 INVNKILKFITAKLFD 250 (268)
Q Consensus 235 ~~i~~~f~~l~~~i~~ 250 (268)
.|++++|++|.+.+.+
T Consensus 165 ~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 165 EGITEGLDWLIDVIKE 180 (183)
T ss_dssp BTHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999998764
No 103
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=8.4e-29 Score=195.93 Aligned_cols=153 Identities=16% Similarity=0.167 Sum_probs=117.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccc------cchhhhhc--
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQ------DHLPVACK-- 154 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~~~~~~-- 154 (268)
.+||+++|++|||||||+++|.+..+.....++++.+.....+.+++ ..+++|||+|++.+. .+...|++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 58999999999999999999999877666667666666666677766 468999999999875 34466775
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCC
Q 041042 155 DSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYN 234 (268)
Q Consensus 155 ~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 234 (268)
++|++++|+|+++.++ ...|+..+.+. +.|.|+|+||+|+. ..+....++.++++.++++++++||++|
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~~--~~p~ilv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 149 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLMEM--GANLLLALNKMDLA------KSLGIEIDVDKLEKILGVKVVPLSAAKK 149 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHHT--TCCEEEEEECHHHH------HHTTCCCCHHHHHHHHTSCEEECBGGGT
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHhc--CCCEEEEEEchHhc------cccChhhHHHHHHHHhCCCEEEEEcCCC
Confidence 8999999999988543 45677777653 45668999999962 1111212467888999999999999999
Q ss_pred cCHHHHHHHHHHHH
Q 041042 235 INVNKILKFITAKL 248 (268)
Q Consensus 235 ~~i~~~f~~l~~~i 248 (268)
.|++++|+++.+.+
T Consensus 150 ~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 150 MGIEELKKAISIAV 163 (165)
T ss_dssp BSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998876
No 104
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.96 E-value=3.8e-28 Score=211.27 Aligned_cols=165 Identities=16% Similarity=0.175 Sum_probs=133.7
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcC--CCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccc-----ccchhhhh
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGD--EKE-QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKA-----QDHLPVAC 153 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~--~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~~~ 153 (268)
..+||+++|++|||||||+++|.++ .+. ..+.+|++.++.. +.+++ .+.+++|||+|++.| ..++..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 3589999999999999999999887 333 2567788776653 44444 678999999999998 78899999
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHH---HHHHhCCCCceEEEEeCCCCCCCCCccchh----chHHHHHHHHHHhC---
Q 041042 154 KDSIAILFMFDLTSRCTLKSVIRWYQ---QARKCNQTAIPIIIGTKFDDFIQLPIDLQW----TIASQARAYAKALN--- 223 (268)
Q Consensus 154 ~~a~~vilv~D~~~~~s~~~~~~~~~---~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~----~~~~~~~~~~~~~~--- 223 (268)
+++|++|+|||+++.++|+++..|.. .+....++.|.+|||||+|+ ..++.+. +..+++.++++.+|
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl---~~~~~r~~~~~v~~~~~~~~~~~~g~~~ 155 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDL---VQLDKREELFQIMMKNLSETSSEFGFPN 155 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGG---SCHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccc---cchhhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999977654 44445666666899999997 2222233 55788999999997
Q ss_pred CeEEEEcCCCCcCHHHHHHHHHHHHhcCcc
Q 041042 224 ATLFFSSATYNINVNKILKFITAKLFDIPW 253 (268)
Q Consensus 224 ~~~~~~Sa~~~~~i~~~f~~l~~~i~~~~~ 253 (268)
+++++|||++ .|+.++|..+++.+.....
T Consensus 156 ~~~~~tSa~~-~~i~e~~~~iv~~li~~~~ 184 (307)
T 3r7w_A 156 LIGFPTSIWD-ESLYKAWSQIVCSLIPNMS 184 (307)
T ss_dssp CEEEECCTTS-SHHHHHHHHHHHTTCSCHH
T ss_pred eEEEEeeecC-ChHHHHHHHHHHHHcCCHH
Confidence 7999999999 8999999999988776543
No 105
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=8.3e-28 Score=197.78 Aligned_cols=162 Identities=15% Similarity=0.148 Sum_probs=115.3
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCe-EEEEEEEeCCCcccccc-chhhhhcCCcE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGA-RISYSIWEVTGDAKAQD-HLPVACKDSIA 158 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~-~~~~~~~~a~~ 158 (268)
...+||+++|++|||||||+++|+++.+...+.+ ++.++.. +.+++. .+.+++|||+|+++|.. ++..|++++|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 3468999999999999999999999988776654 4455543 566654 68899999999999988 88999999999
Q ss_pred EEEEEeCCChh-hHHHHHHH-HHHHHHh---CCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHH-------------
Q 041042 159 ILFMFDLTSRC-TLKSVIRW-YQQARKC---NQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAK------------- 220 (268)
Q Consensus 159 vilv~D~~~~~-s~~~~~~~-~~~i~~~---~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~------------- 220 (268)
+|+|||+++.. ++..+..| ...+... ..+.|.+||+||+|+... .......+.+.+...
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~l~~~l~~~~~~~~~~~s~~ 158 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA---KSAKLIQQQLEKELNTLRVTRSAAPSTL 158 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC---CCHHHHHHHHHHHHHHHHHHCC------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc---ccHHHHHHHHHHHHHHHhccchhccccc
Confidence 99999999864 46666554 4444332 234455799999997322 111222222222221
Q ss_pred --------------------Hh--CCeEEEEcCCCC------cCHHHHHHHHHHHH
Q 041042 221 --------------------AL--NATLFFSSATYN------INVNKILKFITAKL 248 (268)
Q Consensus 221 --------------------~~--~~~~~~~Sa~~~------~~i~~~f~~l~~~i 248 (268)
.+ +++|++|||++| .||+++|++|.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 159 DSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred cCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 11 678999999999 99999999998753
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.6e-28 Score=215.51 Aligned_cols=164 Identities=18% Similarity=0.183 Sum_probs=120.0
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAIL 160 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vi 160 (268)
...+||+|+|.+|||||||+++|.++.+... .+|++.++. .+.. ..+.++||||+|++.|..++..+++.+|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEEE--TTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3468999999999999999999999887544 467776553 3333 4467999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 161 FMFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 161 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
+|||+++.++|+.+..|+..+.... ++.|+|||+||+|+..... ......+....+++..++++++|||++|.||+
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~ 315 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLY 315 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence 9999999999999998887775543 3455579999999732110 01111111112223345679999999999999
Q ss_pred HHHHHHHHHHhcC
Q 041042 239 KILKFITAKLFDI 251 (268)
Q Consensus 239 ~~f~~l~~~i~~~ 251 (268)
++|++|++.+.+.
T Consensus 316 el~~~l~~~l~~~ 328 (329)
T 3o47_A 316 EGLDWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
No 107
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=4.1e-27 Score=187.48 Aligned_cols=156 Identities=11% Similarity=0.108 Sum_probs=120.5
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILF 161 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vil 161 (268)
..+||+++|++|||||||+++|.++.+...+.++++.++....+.+++.. +.+|||+|++.|..++..++..+|++|+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKK--ITFLDTPGHEAFTTMRARGAQVTDIVIL 84 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEE--EEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCce--EEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence 46899999999999999999999999888888887777777777788765 6799999999999999999999999999
Q ss_pred EEeCCC---hhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHH-------HHhC--CeEEEE
Q 041042 162 MFDLTS---RCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYA-------KALN--ATLFFS 229 (268)
Q Consensus 162 v~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~--~~~~~~ 229 (268)
|||+++ .++++.+ ..+.. .+.|.++|+||+|+. . .. .++..... +.++ +++++|
T Consensus 85 v~d~~~~~~~~~~~~l----~~~~~--~~~p~ilv~nK~Dl~---~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 2lkc_A 85 VVAADDGVMPQTVEAI----NHAKA--ANVPIIVAINKMDKP---E-AN----PDRVMQELMEYNLVPEEWGGDTIFCKL 150 (178)
T ss_dssp EEETTCCCCHHHHHHH----HHHGG--GSCCEEEEEETTTSS---C-SC----HHHHHHHHTTTTCCBTTTTSSEEEEEC
T ss_pred EEECCCCCcHHHHHHH----HHHHh--CCCCEEEEEECccCC---c-CC----HHHHHHHHHhcCcChhHcCCcccEEEE
Confidence 999998 4444332 22221 245567999999972 1 11 11222222 2222 589999
Q ss_pred cCCCCcCHHHHHHHHHHHHhcCcc
Q 041042 230 SATYNINVNKILKFITAKLFDIPW 253 (268)
Q Consensus 230 Sa~~~~~i~~~f~~l~~~i~~~~~ 253 (268)
||++|.|++++|++|++.+...+.
T Consensus 151 Sa~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 151 SAKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred ecCCCCCHHHHHHHHHHhhhhhcc
Confidence 999999999999999988776553
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=1.4e-27 Score=220.56 Aligned_cols=167 Identities=19% Similarity=0.181 Sum_probs=125.6
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAI 159 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~v 159 (268)
....+||+|+|.+|||||||+++|.++.+. .+.+|++.++. .+.+ ..+.+++|||+|++.|..++..+++++|++
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~ 393 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGL 393 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEE--EEES--SSCEEEEEEECCCGGGSGGGGGGGTTCCEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEE--EEEe--CCEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 455799999999999999999999999864 56678886654 3333 446799999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCCCCCccchhch-HHHHHHHHHHhCCeEEEEcCCCCcC
Q 041042 160 LFMFDLTSRCTLKSVIRWYQQARKCN--QTAIPIIIGTKFDDFIQLPIDLQWTI-ASQARAYAKALNATLFFSSATYNIN 236 (268)
Q Consensus 160 ilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~~ 236 (268)
|+|||+++.++|+.+..|+..+.... .+.|.|||+||+|+.... ..... ......++...++++++|||++|.|
T Consensus 394 i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 470 (497)
T 3lvq_E 394 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM---KPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 470 (497)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC---CHHHHHHHTTCTTCCSSCEEEEECBTTTTBT
T ss_pred EEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC---CHHHHHHHhchhhhhcCCeEEEEEECCCCCC
Confidence 99999999999999999998886642 345557999999973211 11111 1111111222345699999999999
Q ss_pred HHHHHHHHHHHHhcCccc
Q 041042 237 VNKILKFITAKLFDIPWT 254 (268)
Q Consensus 237 i~~~f~~l~~~i~~~~~~ 254 (268)
|+++|++|.+.+.+....
T Consensus 471 i~~l~~~l~~~~~~~~~~ 488 (497)
T 3lvq_E 471 LYEGLTWLTSNYKSKLAA 488 (497)
T ss_dssp HHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 999999999988766543
No 109
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=3.3e-27 Score=189.99 Aligned_cols=159 Identities=16% Similarity=0.182 Sum_probs=126.1
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccc------cchhhhhc
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQ------DHLPVACK 154 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~~~~~~ 154 (268)
+..+||+++|++|||||||+++|.+..+...+.++++.+.....+.+++ ..+++|||+|++.+. .+...|++
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 3569999999999999999999999876566667777777667777765 568899999999875 34666765
Q ss_pred --CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCC
Q 041042 155 --DSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSAT 232 (268)
Q Consensus 155 --~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 232 (268)
.++++++|+|.++ ++....|+..+.. .+.|.++|+||+|+. ..+...+++.++++.++++++++||+
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~--~~~piilv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~Sa~ 151 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLME--MGANLLLALNKMDLA------KSLGIEIDVDKLEKILGVKVVPLSAA 151 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHT--TTCCEEEEEECHHHH------HHTTCCCCHHHHHHHHTSCEEECBGG
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHh--cCCCEEEEEEhhhcc------ccccchHHHHHHHHHhCCCeEEEEec
Confidence 5999999999875 5666788887765 344567999999962 12222245778899999999999999
Q ss_pred CCcCHHHHHHHHHHHHhcCc
Q 041042 233 YNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 233 ~~~~i~~~f~~l~~~i~~~~ 252 (268)
+|.|++++|+++++.+.+..
T Consensus 152 ~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 152 KKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp GTBSHHHHHHHHHHHHTTC-
T ss_pred CCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999887765
No 110
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.94 E-value=1.3e-26 Score=192.93 Aligned_cols=166 Identities=15% Similarity=0.118 Sum_probs=118.2
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCc------cc----cccchh
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGD------AK----AQDHLP 150 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~------~~----~~~~~~ 150 (268)
...+||+|+|.+|||||||+++|+++.+.....+....+.....+..++ ..+.+|||+|+ +. +.. ..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-IT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence 3469999999999999999999999887533333222333333333343 56899999998 33 222 23
Q ss_pred hhhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccc-hhchHHHHHHHHHHhC--Ce
Q 041042 151 VACKDSIAILFMFDLTSRCTLKS--VIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDL-QWTIASQARAYAKALN--AT 225 (268)
Q Consensus 151 ~~~~~a~~vilv~D~~~~~s~~~--~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~--~~ 225 (268)
.++..+|++|+|||+++..+|+. ...|+..+....++.|.+||+||+|+. .... .....+.+..+++..+ ++
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKC---NMDSLSIDNKLLIKQILDNVKNPIK 180 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGC---C--CCCHHHHHHHHHHHHHCCSCEE
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccC---CchhhHHHHHHHHHHHHHhcCCCce
Confidence 45788999999999999988752 346777766654466668999999973 2111 1112346777888887 89
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 226 LFFSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 226 ~~~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
+++|||++|.||+++|++|++.+.+..
T Consensus 181 ~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 181 FSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887664
No 111
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=9.1e-27 Score=188.44 Aligned_cols=161 Identities=17% Similarity=0.150 Sum_probs=110.5
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC----------ccccccch
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG----------DAKAQDHL 149 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G----------~~~~~~~~ 149 (268)
....+||+|+|.+|||||||+++|.++.+...+.++.+.+.......+++ .+.+|||+| ++.+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 34468999999999999999999999987677777776665555555544 488999999 78888888
Q ss_pred hhhhcCC---cEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHH-HHHHhCCe
Q 041042 150 PVACKDS---IAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARA-YAKALNAT 225 (268)
Q Consensus 150 ~~~~~~a---~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~ 225 (268)
..+++.+ |++++|+|+++..++.... ++..+.. .+.|.++|+||+|+ ..........+++.+ ++...+++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~--~~~p~i~v~nK~Dl---~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY--YGIPVIVIATKADK---IPKGKWDKHAKVVRQTLNIDPEDE 170 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH--TTCCEEEEEECGGG---SCGGGHHHHHHHHHHHHTCCTTSE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEECccc---CChHHHHHHHHHHHHHHcccCCCc
Confidence 8888877 9999999999988877643 2222222 34566799999997 222111112233333 33345789
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHHh
Q 041042 226 LFFSSATYNINVNKILKFITAKLF 249 (268)
Q Consensus 226 ~~~~Sa~~~~~i~~~f~~l~~~i~ 249 (268)
++++||++|.|++++|++|.+.+.
T Consensus 171 ~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 171 LILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHT
T ss_pred eEEEEccCCCCHHHHHHHHHHHhc
Confidence 999999999999999999988764
No 112
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=9.1e-27 Score=187.40 Aligned_cols=155 Identities=15% Similarity=0.230 Sum_probs=122.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC-----------ccccccchhhh
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG-----------DAKAQDHLPVA 152 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G-----------~~~~~~~~~~~ 152 (268)
+||+++|++|||||||+++|.++.+...+.+++..+. ..+.++ .+.+|||+| ++.+..++..|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6999999999999999999999998777777654433 344444 588999999 77888888889
Q ss_pred hcC-CcEEEEEEeCCChhhHHHH-HHHHHH--------H-HHh-CCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHH
Q 041042 153 CKD-SIAILFMFDLTSRCTLKSV-IRWYQQ--------A-RKC-NQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAK 220 (268)
Q Consensus 153 ~~~-a~~vilv~D~~~~~s~~~~-~~~~~~--------i-~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~ 220 (268)
++. ++++++|||+.|..+|.++ ..|... + ... ..+.|.++|+||+|+. .. . .++++++++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~--~--~~~~~~~~~ 147 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKI----KN--V--QEVINFLAE 147 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGC----SC--H--HHHHHHHHH
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhcc----Cc--H--HHHHHHHHH
Confidence 988 9999999999999999887 577653 2 111 2345567999999972 11 1 567888899
Q ss_pred HhCCe-------EEEEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 221 ALNAT-------LFFSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 221 ~~~~~-------~~~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
.++++ +++|||++|.|++++|++|++.+.+.+
T Consensus 148 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 148 KFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp HHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred HhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 88875 699999999999999999999887654
No 113
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=4.2e-27 Score=219.20 Aligned_cols=166 Identities=19% Similarity=0.261 Sum_probs=126.8
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEE------EEE--CCeEEEEEEEeCCCccccccchhh
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKT------LLV--RGARISYSIWEVTGDAKAQDHLPV 151 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~------~~~--~~~~~~l~i~Dt~G~~~~~~~~~~ 151 (268)
....+||+++|.+|||||||++++.++.+...+.+|+|.++..+. +.+ ++..+.+.+|||+|++.|..+...
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 456799999999999999999999999998889999998887552 122 344678999999999999999999
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcC
Q 041042 152 ACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSA 231 (268)
Q Consensus 152 ~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 231 (268)
+++++|++|+|||+++. +.+..|+..+..+.++.|.||||||+|+. ....+..+++.+++...+++++++||
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~vSA 189 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDEN-----PSYNIEQKKINERFPAIENRFHRISC 189 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTC-----TTCCCCHHHHHHHCGGGTTCEEECCC
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCcc-----cccccCHHHHHHHHHhcCCceEEEec
Confidence 99999999999998764 56678999999988777778999999973 12233467788888999999999999
Q ss_pred CCCcCHHHHHHHHHHHHhcCcc
Q 041042 232 TYNINVNKILKFITAKLFDIPW 253 (268)
Q Consensus 232 ~~~~~i~~~f~~l~~~i~~~~~ 253 (268)
++|.||+++|+.|.+.+.+.+.
T Consensus 190 ~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 190 KNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp -----CTTHHHHHHHHHTCTTS
T ss_pred CcccCHHHHHHHHHHHHhcccc
Confidence 9999999999999999987654
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=5.1e-27 Score=187.11 Aligned_cols=153 Identities=16% Similarity=0.167 Sum_probs=114.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhhhh
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKE-QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDH--------LPVAC 153 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~ 153 (268)
.+||+++|.+|||||||+++|.+..+. ....++++.++....+.+++.. +.+|||+|++.+... ...++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 489999999999999999999987642 2334445566777788888754 789999998764321 12468
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC-CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCC
Q 041042 154 KDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQ-TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSAT 232 (268)
Q Consensus 154 ~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 232 (268)
+++|++++|||+++..+++. ..|+..+..... +.|.|+|+||+|+... . . .+++..++++++|||+
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~---~-~--------~~~~~~~~~~~~~SA~ 148 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGE---T-L--------GMSEVNGHALIRLSAR 148 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCC---C-C--------EEEEETTEEEEECCTT
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcc---h-h--------hhhhccCCceEEEeCC
Confidence 99999999999999998874 578888777654 3455799999997211 0 0 1122356789999999
Q ss_pred CCcCHHHHHHHHHHHHhc
Q 041042 233 YNINVNKILKFITAKLFD 250 (268)
Q Consensus 233 ~~~~i~~~f~~l~~~i~~ 250 (268)
+|.|++++|++|.+.+..
T Consensus 149 ~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 149 TGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp TCTTHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHhhh
Confidence 999999999999887644
No 115
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.93 E-value=1.8e-25 Score=180.43 Aligned_cols=159 Identities=15% Similarity=0.173 Sum_probs=119.6
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC----------ccccccch
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG----------DAKAQDHL 149 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G----------~~~~~~~~ 149 (268)
....+||+++|.+|||||||+++|.+..+ ..+.++.+.+........+. .+.+|||+| ++.+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHH
Confidence 44568999999999999999999999874 44555555554433333333 367999999 77788888
Q ss_pred hhhhcCC---cEEEEEEeCCChhh--HHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHh-C
Q 041042 150 PVACKDS---IAILFMFDLTSRCT--LKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKAL-N 223 (268)
Q Consensus 150 ~~~~~~a---~~vilv~D~~~~~s--~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~ 223 (268)
..+++.+ |++++|+|+++..+ +..+..|+... +.|.++|+||+|+ ..........+++.+++... +
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl---~~~~~~~~~~~~~~~~~~~~~~ 167 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDK---VKMSERAKKLEEHRKVFSKYGE 167 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGG---SCGGGHHHHHHHHHHHHHSSCC
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhc---CChHHHHHHHHHHHHHHhhcCC
Confidence 8888776 99999999987644 33444555543 4566899999997 33344445567778888774 4
Q ss_pred CeEEEEcCCCCcCHHHHHHHHHHHHhc
Q 041042 224 ATLFFSSATYNINVNKILKFITAKLFD 250 (268)
Q Consensus 224 ~~~~~~Sa~~~~~i~~~f~~l~~~i~~ 250 (268)
++++++||++|.||+++|++|.+.+.+
T Consensus 168 ~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 168 YTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 799999999999999999999988754
No 116
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.93 E-value=5.6e-26 Score=177.85 Aligned_cols=148 Identities=18% Similarity=0.250 Sum_probs=105.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccc-------ccchhhhhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKE-QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKA-------QDHLPVACKD 155 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~ 155 (268)
.||+++|++|||||||+++|.++.+. ....++++.+.....+..++. .+.+|||+|++.+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 69999999999999999999988753 233344455566666777765 5789999998873 4455678899
Q ss_pred CcEEEEEEeCCChhhHHH--HHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCC-eEEEEcCC
Q 041042 156 SIAILFMFDLTSRCTLKS--VIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNA-TLFFSSAT 232 (268)
Q Consensus 156 a~~vilv~D~~~~~s~~~--~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 232 (268)
+|++++|||+++..+... +..|+.. .+.|.++|+||+|+. +. .+++.+++ .+++ +++++||+
T Consensus 80 ~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~----~~-----~~~~~~~~-~~~~~~~~~~Sa~ 144 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADYEVAEYLRR-----KGKPVILVATKVDDP----KH-----ELYLGPLY-GLGFGDPIPTSSE 144 (161)
T ss_dssp CSEEEEEEESSSCCCHHHHHHHHHHHH-----HTCCEEEEEECCCSG----GG-----GGGCGGGG-GGSSCSCEECBTT
T ss_pred CCEEEEEEECCCcccHhHHHHHHHHHh-----cCCCEEEEEECcccc----cc-----hHhHHHHH-hCCCCCeEEEecc
Confidence 999999999998654432 2233322 245668999999972 11 13344555 6777 89999999
Q ss_pred CCcCHHHHHHHHHHHH
Q 041042 233 YNINVNKILKFITAKL 248 (268)
Q Consensus 233 ~~~~i~~~f~~l~~~i 248 (268)
+|.|++++|++|++.+
T Consensus 145 ~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 145 HARGLEELLEAIWERL 160 (161)
T ss_dssp TTBSHHHHHHHHHHHC
T ss_pred cCCChHHHHHHHHHhC
Confidence 9999999999998865
No 117
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.93 E-value=1.9e-25 Score=189.49 Aligned_cols=156 Identities=15% Similarity=0.160 Sum_probs=120.0
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccc------hhhhh-
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDH------LPVAC- 153 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------~~~~~- 153 (268)
...+||+++|++|||||||+++|++..+.....+++..+.....+..++ ..+.+|||+|++.+... ...|+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 3468999999999999999999999877555566555554444444444 67899999999887653 35666
Q ss_pred -cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCC
Q 041042 154 -KDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSAT 232 (268)
Q Consensus 154 -~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 232 (268)
..+|++++|+|+++.++.. .|...+... +.|.|+|+||+|+ ...+....++..+++.++++++++||+
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~--~~pvilv~NK~Dl------~~~~~i~~~~~~l~~~lg~~vi~~SA~ 149 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILEM--EKKVILAMTAIDE------AKKTGMKIDRYELQKHLGIPVVFTSSV 149 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHTT--TCCEEEEEECHHH------HHHTTCCBCHHHHHHHHCSCEEECCTT
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHhc--CCCEEEEEECcCC------CCccchHHHHHHHHHHcCCCEEEEEee
Confidence 5899999999999876543 466666543 4566899999996 222222234788899999999999999
Q ss_pred CCcCHHHHHHHHHHHHh
Q 041042 233 YNINVNKILKFITAKLF 249 (268)
Q Consensus 233 ~~~~i~~~f~~l~~~i~ 249 (268)
+|.|++++|+.+.+.+.
T Consensus 150 ~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 150 TGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhh
Confidence 99999999999998775
No 118
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.93 E-value=8.4e-25 Score=190.20 Aligned_cols=176 Identities=13% Similarity=0.126 Sum_probs=133.0
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccc----------cc
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQ-GGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQ----------DH 148 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~ 148 (268)
....-.|+++|.+|||||||+|+|++..+.. ...+.+..+........+ ....+.+|||+|+..+. ..
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~ 85 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEI 85 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHH
Confidence 3445799999999999999999999988642 222212222222223333 14668899999986544 55
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhC--CeE
Q 041042 149 LPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALN--ATL 226 (268)
Q Consensus 149 ~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 226 (268)
...+++.+|++++|+|+++..++++...|++.+... +.|.|+|+||+|+ .. ......+.+..+.+.++ .++
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl---~~--~~~~~~~~~~~l~~~~~~~~~i 158 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDK---IG--PAKNVLPLIDEIHKKHPELTEI 158 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGG---SS--SGGGGHHHHHHHHHHCTTCCCE
T ss_pred HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccC---CC--CHHHHHHHHHHHHHhccCCCeE
Confidence 677889999999999999999999988888887763 4566899999996 21 23455677788888876 789
Q ss_pred EEEcCCCCcCHHHHHHHHHHHHhcCccchhcccCCCC
Q 041042 227 FFSSATYNINVNKILKFITAKLFDIPWTLERNLTIGE 263 (268)
Q Consensus 227 ~~~Sa~~~~~i~~~f~~l~~~i~~~~~~~~~~~~~~~ 263 (268)
+++||++|.|++++|+.+.+.+.+.++..+.+...+.
T Consensus 159 ~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~ 195 (308)
T 3iev_A 159 VPISALKGANLDELVKTILKYLPEGEPLFPEDMITDL 195 (308)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCC
T ss_pred EEEeCCCCCCHHHHHHHHHHhCccCCCCCCcccccCC
Confidence 9999999999999999999999888776666555444
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=1.6e-25 Score=191.33 Aligned_cols=153 Identities=18% Similarity=0.134 Sum_probs=117.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccc------cchhhhhc--
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQ------DHLPVACK-- 154 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~~~~~~-- 154 (268)
.+||+++|++|||||||+++|++..+.....++ .++..+...++. ...+++|||+|++.+. .+...|+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg--~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPG--VTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSC--CCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCC--CcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 489999999999999999999998754444453 344344555555 5679999999999876 45667776
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCC
Q 041042 155 DSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYN 234 (268)
Q Consensus 155 ~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 234 (268)
.+|++|+|||+++.+++ ..|..++.. .+.|.|+|+||+|+. .......++..+++.++++++++||++|
T Consensus 80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~--~~~p~ilv~NK~Dl~------~~~~~~~~~~~l~~~lg~~vi~~SA~~g 148 (272)
T 3b1v_A 80 RADSILNVVDATNLERN---LYLTTQLIE--TGIPVTIALNMIDVL------DGQGKKINVDKLSYHLGVPVVATSALKQ 148 (272)
T ss_dssp CCSEEEEEEEGGGHHHH---HHHHHHHHH--TCSCEEEEEECHHHH------HHTTCCCCHHHHHHHHTSCEEECBTTTT
T ss_pred CCCEEEEEecCCchHhH---HHHHHHHHh--cCCCEEEEEEChhhC------CcCCcHHHHHHHHHHcCCCEEEEEccCC
Confidence 69999999999986654 456666654 245668999999962 1222224567889999999999999999
Q ss_pred cCHHHHHHHHHHHHh
Q 041042 235 INVNKILKFITAKLF 249 (268)
Q Consensus 235 ~~i~~~f~~l~~~i~ 249 (268)
.|++++|+++.+.+.
T Consensus 149 ~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 149 TGVDQVVKKAAHTTT 163 (272)
T ss_dssp BSHHHHHHHHHHSCT
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999988654
No 120
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=1.4e-25 Score=190.09 Aligned_cols=151 Identities=13% Similarity=0.090 Sum_probs=120.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccccc----------chhhhh
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQD----------HLPVAC 153 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~~~~ 153 (268)
.||+++|.+|||||||+|+|.+..+.....++++.+.....+.+++. .+.+|||||+..+.. +...|+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999998876666777777777777777776 688999999988764 556777
Q ss_pred --cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcC
Q 041042 154 --KDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSA 231 (268)
Q Consensus 154 --~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 231 (268)
+++|++|+|+|+++.+++..+..|+.++ +.|.|+|+||+|+. ...........+++.++++++++||
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~~~-----~~pvilv~NK~Dl~------~~~~~~~~~~~l~~~lg~~vi~~SA 148 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLFEL-----GKPVVVALNMMDIA------EHRGISIDTEKLESLLGCSVIPIQA 148 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHTTS-----CSCEEEEEECHHHH------HHTTCEECHHHHHHHHCSCEEECBG
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHHHc-----CCCEEEEEEChhcC------CcCCcHHHHHHHHHHcCCCEEEEEC
Confidence 8999999999999977766555544332 45668999999962 1222223356688889999999999
Q ss_pred CCCcCHHHHHHHHHHH
Q 041042 232 TYNINVNKILKFITAK 247 (268)
Q Consensus 232 ~~~~~i~~~f~~l~~~ 247 (268)
++|.|++++|++|.+.
T Consensus 149 ~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 149 HKNIGIPALQQSLLHC 164 (256)
T ss_dssp GGTBSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999999876
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.92 E-value=1.8e-25 Score=191.35 Aligned_cols=157 Identities=13% Similarity=0.084 Sum_probs=121.0
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccccc----------chhh
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQD----------HLPV 151 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~~ 151 (268)
..+||+++|.+|||||||+|+|++..+.....++++.+.....+..++. .+.+|||+|+..+.. +...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHH
Confidence 3689999999999999999999998876666776666766666766665 467899999988763 2333
Q ss_pred hh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEE
Q 041042 152 AC--KDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFS 229 (268)
Q Consensus 152 ~~--~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (268)
|+ +.+|++|+|+|+++.+++..+..|+.+. +.|.|+|+||+|+ ............+++.++++++++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~-----~~p~ivv~NK~Dl------~~~~~~~~~~~~l~~~lg~~~i~~ 148 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTLQLLEL-----GIPCIVALNMLDI------AEKQNIRIEIDALSARLGCPVIPL 148 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH-----TCCEEEEEECHHH------HHHTTEEECHHHHHHHHTSCEEEC
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHHHHHhc-----CCCEEEEEECccc------hhhhhHHHHHHHHHHhcCCCEEEE
Confidence 43 7999999999999877665554444433 4566899999996 212222234577888999999999
Q ss_pred cCCCCcCHHHHHHHHHHHHhcC
Q 041042 230 SATYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 230 Sa~~~~~i~~~f~~l~~~i~~~ 251 (268)
||++|.|++++|+.|.+.+.+.
T Consensus 149 SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 149 VSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp CCGGGHHHHHHHHHHHTCCCCC
T ss_pred EcCCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999998876654
No 122
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.92 E-value=1.3e-24 Score=179.59 Aligned_cols=166 Identities=16% Similarity=0.070 Sum_probs=111.3
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEEC-CeEEEEEEEeCCC----------ccccccch
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVR-GARISYSIWEVTG----------DAKAQDHL 149 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G----------~~~~~~~~ 149 (268)
...+||+|+|.+|||||||+++|++..+......+.|.+.......+. .....+.+|||+| ++.+..+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 346899999999999999999999987322233333333333334444 3446688999999 45556677
Q ss_pred hhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHH-----
Q 041042 150 PVACKD---SIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKA----- 221 (268)
Q Consensus 150 ~~~~~~---a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~----- 221 (268)
..|++. +|++++|+|+++..+.. -..|+..+.. ...|.|+|+||+|+ ..........++..+....
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~--~~~p~i~v~nK~Dl---~~~~~~~~~~~~~~~~l~~~~~~~ 180 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP--TGKPIHSLLTKCDK---LTRQESINALRATQKSLDAYRDAG 180 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG--GCCCEEEEEECGGG---SCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh--cCCCEEEEEecccc---CChhhHHHHHHHHHHHHHhhhhcc
Confidence 777766 77899999998754422 2345555544 34566899999997 2222111123333333333
Q ss_pred --hCCeEEEEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 222 --LNATLFFSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 222 --~~~~~~~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
.+++++++||++|.|++++|++|.+.+....
T Consensus 181 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 181 YAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp CCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred cCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 5678999999999999999999999887654
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=4.3e-24 Score=182.43 Aligned_cols=159 Identities=15% Similarity=0.138 Sum_probs=124.8
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhhh--
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQD------HLPVAC-- 153 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------~~~~~~-- 153 (268)
+.+||+++|++|||||||+++|.+..+.....++++.+.....+..++.. +.+|||+|+..+.. +...|+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 35899999999999999999999988766677777777777777777755 88999999998776 566676
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCC
Q 041042 154 KDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATY 233 (268)
Q Consensus 154 ~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 233 (268)
.++|++++|+|+++.+ ....|...+.... ..|.++|+||+|+ ........+...+++.++++++++||++
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~-~~p~ilv~NK~Dl------~~~~~~~~~~~~l~~~lg~~~~~~Sa~~ 149 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLFLTLELFEME-VKNIILVLNKFDL------LKKKGAKIDIKKMRKELGVPVIPTNAKK 149 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHHHHHHHHHTT-CCSEEEEEECHHH------HHHHTCCCCHHHHHHHHSSCEEECBGGG
T ss_pred cCCcEEEEEecCCcch---hhHHHHHHHHhcC-CCCEEEEEEChhc------CcccccHHHHHHHHHHcCCcEEEEEeCC
Confidence 6899999999998854 2334444444432 2556799999996 2222222337788899999999999999
Q ss_pred CcCHHHHHHHHHHHHhcCc
Q 041042 234 NINVNKILKFITAKLFDIP 252 (268)
Q Consensus 234 ~~~i~~~f~~l~~~i~~~~ 252 (268)
|.|++++|+.+.+.+....
T Consensus 150 g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 150 GEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp TBTHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHhccc
Confidence 9999999999999876553
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=5.3e-25 Score=181.44 Aligned_cols=148 Identities=17% Similarity=0.145 Sum_probs=107.6
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCC---CCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC-
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQ---GGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKD- 155 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~- 155 (268)
....+||+++|++|||||||+++|.+..+.. .+.++++.++ ..+.+++|||+|++.+...+..|++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 3446899999999999999999999987654 3455554443 34568899999999999999999887
Q ss_pred ---CcEEEEEEeCC-ChhhHHHHHHHHHHHHHh----C-CCCceEEEEeCCCCCCCCCcc-chhchHHHHHHHHHHhCCe
Q 041042 156 ---SIAILFMFDLT-SRCTLKSVIRWYQQARKC----N-QTAIPIIIGTKFDDFIQLPID-LQWTIASQARAYAKALNAT 225 (268)
Q Consensus 156 ---a~~vilv~D~~-~~~s~~~~~~~~~~i~~~----~-~~~~~ilvgnK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~ 225 (268)
+|++|+|||++ +.++|..+..|+..+... . .+.|.+||+||+|+....... ......+++..++...++.
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999 889999999998888664 2 345557999999974221100 1112256678888888899
Q ss_pred EEEEcCCCCcC
Q 041042 226 LFFSSATYNIN 236 (268)
Q Consensus 226 ~~~~Sa~~~~~ 236 (268)
++++||++|.+
T Consensus 160 ~~~~Sa~~~~~ 170 (218)
T 1nrj_B 160 LNEVERKINEE 170 (218)
T ss_dssp HHC--------
T ss_pred ccccccccccc
Confidence 99999999875
No 125
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.91 E-value=2.4e-23 Score=180.27 Aligned_cols=167 Identities=15% Similarity=0.134 Sum_probs=114.5
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCCccc--------cccchhh
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQ-GGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK--------AQDHLPV 151 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~ 151 (268)
.+..+|+++|.+|||||||+|+|++..+.. ...+.+..+.....+.. ....+++|||||+.. +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~--~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE--GRRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE--TTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe--CCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 456789999999999999999999988642 22222222222222222 346789999999876 3445667
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHH-HHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEc
Q 041042 152 ACKDSIAILFMFDLTSRCTLKSVIRWY-QQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSS 230 (268)
Q Consensus 152 ~~~~a~~vilv~D~~~~~s~~~~~~~~-~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 230 (268)
+++.+|++++|||+++..+.. ..|+ +.+....++.|.|+|+||+|+. .. .....+.++.+ ....+++++|
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~---~~--~~~~~~~~~~~--~~~~~~~~iS 153 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDAA---KY--PEEAMKAYHEL--LPEAEPRMLS 153 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGGC---SS--HHHHHHHHHHT--STTSEEEECC
T ss_pred HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEECcccC---Cc--hHHHHHHHHHh--cCcCcEEEEe
Confidence 899999999999999875544 3444 5555544455668999999972 11 11022333333 1235789999
Q ss_pred CCCCcCHHHHHHHHHHHHhcCccchhcc
Q 041042 231 ATYNINVNKILKFITAKLFDIPWTLERN 258 (268)
Q Consensus 231 a~~~~~i~~~f~~l~~~i~~~~~~~~~~ 258 (268)
|++|.|++++|+.|.+.+.+.++..+.+
T Consensus 154 A~~g~gv~~l~~~l~~~l~~~~~~y~~~ 181 (301)
T 1wf3_A 154 ALDERQVAELKADLLALMPEGPFFYPED 181 (301)
T ss_dssp TTCHHHHHHHHHHHHTTCCBCCCSSCTT
T ss_pred CCCCCCHHHHHHHHHHhcccCCCCCCcc
Confidence 9999999999999999887766555443
No 126
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.91 E-value=6.2e-24 Score=186.76 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=119.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCC-CC-CCcceeeEEEEEEECCeEEEEEEEeCCCcc----ccccchhhhhcC---
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQG-GS-PGEGLNMMDKTLLVRGARISYSIWEVTGDA----KAQDHLPVACKD--- 155 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~-~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----~~~~~~~~~~~~--- 155 (268)
+|+|+|.+|||||||+++|.+..+... +. .|...+ ...+.+++ ...+.+|||+|+. .+..+...|++.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~--~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~ 236 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPN--LGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIER 236 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCC--EEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCce--EEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence 588999999999999999998764322 22 233222 23445554 2368899999964 345566667654
Q ss_pred CcEEEEEEeCCC---hhhHHHHHHHHHHHHHhCC---CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhC--CeEE
Q 041042 156 SIAILFMFDLTS---RCTLKSVIRWYQQARKCNQ---TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALN--ATLF 227 (268)
Q Consensus 156 a~~vilv~D~~~---~~s~~~~~~~~~~i~~~~~---~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 227 (268)
++++|+|+|+++ +++++.+..|+.++..+.+ ..|.+||+||+|+. .. .+...++++.++ ++++
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~---~~------~e~~~~l~~~l~~~~~v~ 307 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP---EA------AENLEAFKEKLTDDYPVF 307 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST---TH------HHHHHHHHHHCCSCCCBC
T ss_pred ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC---CC------HHHHHHHHHHhhcCCCEE
Confidence 999999999999 8899999999999998763 45557999999962 11 245566777776 7899
Q ss_pred EEcCCCCcCHHHHHHHHHHHHhcCcc
Q 041042 228 FSSATYNINVNKILKFITAKLFDIPW 253 (268)
Q Consensus 228 ~~Sa~~~~~i~~~f~~l~~~i~~~~~ 253 (268)
++||+++.|++++|++|.+.+.+.+.
T Consensus 308 ~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 308 PISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp CCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred EEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 99999999999999999999987654
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=3.4e-24 Score=194.82 Aligned_cols=161 Identities=16% Similarity=0.185 Sum_probs=114.8
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCc----------cccccch
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKE-QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGD----------AKAQDHL 149 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~~ 149 (268)
...+||+++|.+|||||||+|+|++..+. ....++++.+.....+..++.. +++|||+|+ |.|..+.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHH
Confidence 34699999999999999999999998753 3444545556666677777765 789999998 4454444
Q ss_pred h-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHH-----HHHHHHHhC
Q 041042 150 P-VACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQ-----ARAYAKALN 223 (268)
Q Consensus 150 ~-~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~ 223 (268)
. .+++.+|++++|||+++..++++. .|+..+.. .+.+.|||+||+|+. .. .....++ .+.++...+
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~---~~--~~~~~~~~~~~~~~~l~~~~~ 322 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE--AGKAVVIVVNKWDAV---DK--DESTMKEFEENIRDHFQFLDY 322 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGS---CC--CTTHHHHHHHHHHHHCGGGTT
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH--cCCcEEEEEECccCC---Cc--chHHHHHHHHHHHHhcccCCC
Confidence 3 478899999999999999888876 57777654 345567999999973 21 1111122 222333347
Q ss_pred CeEEEEcCCCCcCHHHHHHHHHHHHhcC
Q 041042 224 ATLFFSSATYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 224 ~~~~~~Sa~~~~~i~~~f~~l~~~i~~~ 251 (268)
++++++||++|.|++++|+.+.+.+.+.
T Consensus 323 ~~~~~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 323 APILFMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp SCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred CCEEEEecccCCCHHHHHHHHHHHHHHh
Confidence 8999999999999999999998877643
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.89 E-value=8.9e-23 Score=186.71 Aligned_cols=156 Identities=14% Similarity=0.215 Sum_probs=97.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccch--------hhhh
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEK-EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHL--------PVAC 153 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~~ 153 (268)
.+||+++|.+|||||||+|+|.+... .....++++.++....+.+++. .+.+|||+|++.+.... ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~--~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKT--MFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTE--EEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--EEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 58999999999999999999998753 2344455556666677777774 58899999998765443 4478
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCC
Q 041042 154 KDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATY 233 (268)
Q Consensus 154 ~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 233 (268)
+.+|++|+|||+++..+++.+..+...+.... +.|.|+|+||+|+. ... .. ..+.+.+....+++++||++
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-~~piIvV~NK~Dl~---~~~---~~--~~~~l~~~~~~~~i~vSAkt 381 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAHP-AAKFLTVANKLDRA---ANA---DA--LIRAIADGTGTEVIGISALN 381 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-TSEEEEEEECTTSC---TTT---HH--HHHHHHHHHTSCEEECBTTT
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-CCCEEEEEECcCCC---Ccc---ch--hHHHHHhcCCCceEEEEECC
Confidence 99999999999999988864443333333322 45557999999972 211 11 12344544347899999999
Q ss_pred CcCHHHHHHHHHHHHh
Q 041042 234 NINVNKILKFITAKLF 249 (268)
Q Consensus 234 ~~~i~~~f~~l~~~i~ 249 (268)
|.|++++|++|.+.+.
T Consensus 382 g~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 382 GDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TBSHHHHHHHHTHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999999887
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.89 E-value=5.7e-23 Score=187.79 Aligned_cols=162 Identities=15% Similarity=0.182 Sum_probs=117.5
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCC-CCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC----------ccccccch
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDE-KEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG----------DAKAQDHL 149 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G----------~~~~~~~~ 149 (268)
...+||+++|.+|||||||+++|.+.. ......++++.+.....+..++. .+++|||+| ++.|..+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 446899999999999999999999775 33344555566666667777776 588999999 67777666
Q ss_pred hh-hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHh-----C
Q 041042 150 PV-ACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKAL-----N 223 (268)
Q Consensus 150 ~~-~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~-----~ 223 (268)
.. +++.+|++|+|+|+++..+.. ...|...+.. .+.+.|||+||+|+. . ......+++.+.+++. +
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~--~~~~~ilv~NK~Dl~---~--~~~~~~~~~~~~~~~~~~~~~~ 342 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE--AGKAVVIVVNKWDAV---D--KDESTMKEFEENIRDHFQFLDY 342 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH--TTCEEEEEEECGGGS---C--CCSSHHHHHHHHHHHHCGGGTT
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH--cCCCEEEEEEChhcC---C--CchHHHHHHHHHHHHhcccCCC
Confidence 54 789999999999998754432 3455555554 345668999999973 1 1233455555555554 6
Q ss_pred CeEEEEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 224 ATLFFSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 224 ~~~~~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
++++++||++|.||+++|+.+.+.+.+..
T Consensus 343 ~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 343 APILFMSALTKKRIHTLMPAIIKASENHS 371 (456)
T ss_dssp SCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred CCEEEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence 89999999999999999999998775443
No 130
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.88 E-value=1.4e-23 Score=189.10 Aligned_cols=159 Identities=14% Similarity=0.095 Sum_probs=115.1
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccc-------hhh
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKE-QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDH-------LPV 151 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~~~ 151 (268)
....+||+++|..|+|||||+++|++..+. ....+++..+...+.+.+.+.. .+.+|||+|++.+..+ ...
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHH
Confidence 445799999999999999999999998763 2333444455555666666542 6889999999988665 345
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcC
Q 041042 152 ACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSA 231 (268)
Q Consensus 152 ~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 231 (268)
+++.+|++|+|||++..+ ....|+..+... +.|+|+|+||+|+. ... . .+..+++++.++++++++||
T Consensus 110 ~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~--~~piIvV~NK~Dl~---~~~-~---~~~~~~l~~~~g~~v~~vSA 177 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPTP---YEDDVVNLFKEM--EIPFVVVVNKIDVL---GEK-A---EELKGLYESRYEAKVLLVSA 177 (423)
T ss_dssp HHTSCSEEEEECSSSCCH---HHHHHHHHHHHT--TCCEEEECCCCTTT---TCC-C---THHHHHSSCCTTCCCCCCSS
T ss_pred HHhcCCEEEEEEeCCChH---HHHHHHHHHHhc--CCCEEEEEeCcCCC---Ccc-H---HHHHHHHHHHcCCCEEEEEC
Confidence 789999999999994333 335677776665 45668999999973 211 1 15667778888999999999
Q ss_pred CCCcCHHHHHHHHHHHHhcC
Q 041042 232 TYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 232 ~~~~~i~~~f~~l~~~i~~~ 251 (268)
++|.|++++|+.|.+.+.+.
T Consensus 178 ktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 178 LQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCTTSTTTHHHHHHHHSCCC
T ss_pred CCCCCHHHHHHHHHHhhhhh
Confidence 99999999999999998554
No 131
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=3.6e-22 Score=181.63 Aligned_cols=152 Identities=18% Similarity=0.246 Sum_probs=105.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccc---------cccchhhhh
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKE-QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK---------AQDHLPVAC 153 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------~~~~~~~~~ 153 (268)
-+|+++|.+|||||||+|+|++.... ....++++.+.....+.+++.. +++|||+|++. +......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHH
Confidence 38999999999999999999988742 3445555566666777788765 68899999764 234566789
Q ss_pred cCCcEEEEEEeCCChhhHHH--HHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHH-HHHHHHhCC-eEEEE
Q 041042 154 KDSIAILFMFDLTSRCTLKS--VIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQA-RAYAKALNA-TLFFS 229 (268)
Q Consensus 154 ~~a~~vilv~D~~~~~s~~~--~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~ 229 (268)
++||++|+|||+++..+..+ +..|+.. .+.|.+||+||+|+ ... ...++ .++. ..++ +++++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~-----~~~p~ilv~NK~D~------~~~--~~~~~~~~~~-~lg~~~~~~i 145 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRK-----STVDTILVANKAEN------LRE--FEREVKPELY-SLGFGEPIPV 145 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHH-----HTCCEEEEEESCCS------HHH--HHHHTHHHHG-GGSSCSCEEC
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEeCCCC------ccc--cHHHHHHHHH-hcCCCCEEEE
Confidence 99999999999987655433 3344432 14566899999996 111 11223 4444 4676 78999
Q ss_pred cCCCCcCHHHHHHHHHHHHhcC
Q 041042 230 SATYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 230 Sa~~~~~i~~~f~~l~~~i~~~ 251 (268)
||++|.|++++|+.+.+.+.+.
T Consensus 146 SA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 146 SAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHT
T ss_pred eccCCCCHHHHHHHHHHhcccc
Confidence 9999999999999999988654
No 132
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.88 E-value=1.2e-21 Score=173.68 Aligned_cols=160 Identities=14% Similarity=0.136 Sum_probs=118.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccccc---------chhhhh
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQD---------HLPVAC 153 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------~~~~~~ 153 (268)
.++|+++|.+|||||||+++|.+..+.....+....+.....+..+ ...+.+|||+|...+.. ....+.
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 4799999999999999999999876533222222222322333333 35688999999755321 112345
Q ss_pred cCCcEEEEEEeCCChh--hHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcC
Q 041042 154 KDSIAILFMFDLTSRC--TLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSA 231 (268)
Q Consensus 154 ~~a~~vilv~D~~~~~--s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 231 (268)
..+|++++|+|+++.. +++....|+..+.....+.|.|+|+||+|+. . .. ..+++.++++..+++++++||
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~----~--~~-~~~~~~~~~~~~~~~~~~iSA 317 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA----D--EE-NIKRLEKFVKEKGLNPIKISA 317 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC----C--HH-HHHHHHHHHHHTTCCCEECBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC----C--hH-HHHHHHHHHHhcCCCeEEEeC
Confidence 6799999999999887 7888889999988765556668999999962 1 11 124566777788999999999
Q ss_pred CCCcCHHHHHHHHHHHHhcC
Q 041042 232 TYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 232 ~~~~~i~~~f~~l~~~i~~~ 251 (268)
++|+|++++|++|.+.+...
T Consensus 318 ~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHH
Confidence 99999999999999887554
No 133
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.87 E-value=1.1e-21 Score=180.13 Aligned_cols=159 Identities=13% Similarity=0.130 Sum_probs=114.1
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCC-------CCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhh
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDE-------KEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVA 152 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 152 (268)
.+..++|+++|..++|||||+++|.+.. +.....+.+..+.....+.+++ ..+.+|||+|+++|......+
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence 4567999999999999999999999876 2223333232233223444555 568899999999998888889
Q ss_pred hcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHh----CCe
Q 041042 153 CKDSIAILFMFDLTS---RCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKAL----NAT 225 (268)
Q Consensus 153 ~~~a~~vilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~ 225 (268)
+..+|++|+|+|+++ .++++.+. .+... +.|.|+|+||+|+ ...+......+++.++++.. +++
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~~--~ip~IvviNK~Dl---~~~~~~~~~~~~l~~~l~~~~~~~~~~ 164 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTGEHML----ILDHF--NIPIIVVITKSDN---AGTEEIKRTEMIMKSILQSTHNLKNSS 164 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHHHHHH----HHHHT--TCCBCEEEECTTS---SCHHHHHHHHHHHHHHHHHSSSGGGCC
T ss_pred HhhCCEEEEEEecCCCccHHHHHHHH----HHHHc--CCCEEEEEECCCc---ccchhHHHHHHHHHHHHhhhcccccce
Confidence 999999999999988 45554433 23322 3455899999997 33222334466777777766 678
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHHh
Q 041042 226 LFFSSATYNINVNKILKFITAKLF 249 (268)
Q Consensus 226 ~~~~Sa~~~~~i~~~f~~l~~~i~ 249 (268)
++++||++|.|++++++.|.+.+.
T Consensus 165 ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 165 IIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHHhhc
Confidence 999999999999999999998775
No 134
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.87 E-value=1.3e-22 Score=178.86 Aligned_cols=122 Identities=14% Similarity=0.154 Sum_probs=93.1
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHhC--CCCceEEEEeCC
Q 041042 130 ARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLT----------SRCTLKSVIRWYQQARKCN--QTAIPIIIGTKF 197 (268)
Q Consensus 130 ~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~----------~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~ 197 (268)
+.+.+++|||+||++|+.++..||++++++|+|||++ +.++|+++..|++.+.... ++.|+||||||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 6789999999999999999999999999999999998 7889999999999887642 455667999999
Q ss_pred CCCCC-C-----------Cccc----hhchHHHHHHHHHH----------------hCCeEEEEcCCCCcCHHHHHHHHH
Q 041042 198 DDFIQ-L-----------PIDL----QWTIASQARAYAKA----------------LNATLFFSSATYNINVNKILKFIT 245 (268)
Q Consensus 198 Dl~~~-~-----------~~~~----~~~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~f~~l~ 245 (268)
||... + ++-. .....+++.+++.. ..+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 97310 0 0000 01125667777543 123468999999999999999999
Q ss_pred HHHhcC
Q 041042 246 AKLFDI 251 (268)
Q Consensus 246 ~~i~~~ 251 (268)
+.+.+.
T Consensus 341 ~~I~~~ 346 (354)
T 2xtz_A 341 ETLRRR 346 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 135
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.87 E-value=3.8e-21 Score=173.04 Aligned_cols=163 Identities=13% Similarity=0.103 Sum_probs=118.6
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEE---------------------E---CCeEEEEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLL---------------------V---RGARISYS 135 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~---------------------~---~~~~~~l~ 135 (268)
....+||+++|.+|+|||||+++|.+...... .+ +....+. . ......+.
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK----LG--YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRIS 78 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS----SE--EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccc----cC--ccccceeeccccccccceecccccccccccccccccceEE
Confidence 34469999999999999999999988543211 11 1101100 0 11236799
Q ss_pred EEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHH
Q 041042 136 IWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQA 215 (268)
Q Consensus 136 i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~ 215 (268)
+|||+|+++|......++..+|++|+|+|+++..++....+|+..+..... .+.|+|+||+|+ ...+......+++
T Consensus 79 iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~-~~iivviNK~Dl---~~~~~~~~~~~~i 154 (403)
T 3sjy_A 79 FIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV-KNLIIVQNKVDV---VSKEEALSQYRQI 154 (403)
T ss_dssp EEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC-CCEEEEEECGGG---SCHHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC-CCEEEEEECccc---cchHHHHHHHHHH
Confidence 999999999999999999999999999999998778888888877766542 355799999997 2222222234444
Q ss_pred HHHHHHh---CCeEEEEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 216 RAYAKAL---NATLFFSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 216 ~~~~~~~---~~~~~~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
.++.+.. +++++++||++|.|++++|+.|.+.+....
T Consensus 155 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~ 194 (403)
T 3sjy_A 155 KQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY 194 (403)
T ss_dssp HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence 4444433 578999999999999999999998775543
No 136
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.87 E-value=3e-22 Score=176.63 Aligned_cols=128 Identities=16% Similarity=0.221 Sum_probs=99.9
Q ss_pred EEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHh--CCCCce
Q 041042 123 KTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTS----------RCTLKSVIRWYQQARKC--NQTAIP 190 (268)
Q Consensus 123 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~----------~~s~~~~~~~~~~i~~~--~~~~~~ 190 (268)
..+.++ .+.+++|||+||+.++.+|..||++++++|+|||+++ ..+|++...|++.+... ..+.|+
T Consensus 186 ~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pi 263 (353)
T 1cip_A 186 THFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 263 (353)
T ss_dssp EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred EEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcE
Confidence 334444 5779999999999999999999999999999999999 56799999999888764 245566
Q ss_pred EEEEeCCCCCCC-C---------CccchhchHHHHHHHHH-----------HhCCeEEEEcCCCCcCHHHHHHHHHHHHh
Q 041042 191 IIIGTKFDDFIQ-L---------PIDLQWTIASQARAYAK-----------ALNATLFFSSATYNINVNKILKFITAKLF 249 (268)
Q Consensus 191 ilvgnK~Dl~~~-~---------~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~f~~l~~~i~ 249 (268)
||||||+||... + ++-...+..+++..++. ..++.+++|||++|.||+++|+++.+.+.
T Consensus 264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 264 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp EEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 799999997210 0 00000234678888887 35678999999999999999999999887
Q ss_pred cCc
Q 041042 250 DIP 252 (268)
Q Consensus 250 ~~~ 252 (268)
+..
T Consensus 344 ~~~ 346 (353)
T 1cip_A 344 KNN 346 (353)
T ss_dssp HHC
T ss_pred HHH
Confidence 543
No 137
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.87 E-value=5e-22 Score=181.91 Aligned_cols=153 Identities=14% Similarity=0.255 Sum_probs=114.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcc-cccc--------chhhh
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEK-EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA-KAQD--------HLPVA 152 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-~~~~--------~~~~~ 152 (268)
.+||+++|.+|||||||+|+|.+.++ .....++++.++....+.+++.. +.+|||+|++ .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~--~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL--FRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE--EEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeE--EEEEECCCccccchhhHHHHHHHHHHHH
Confidence 38999999999999999999998763 23444545566767778887754 7899999988 6542 23467
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCC
Q 041042 153 CKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSAT 232 (268)
Q Consensus 153 ~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 232 (268)
++.+|++|+|||+++..+++... +++.+ .+.|.|+|+||+|+... ...+++.+++. .+++++++||+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l----~~~piivV~NK~DL~~~-------~~~~~~~~~~~-~~~~~i~iSAk 387 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI----KNKRYLVVINKVDVVEK-------INEEEIKNKLG-TDRHMVKISAL 387 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH----TTSSEEEEEEECSSCCC-------CCHHHHHHHHT-CSTTEEEEEGG
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh----cCCCEEEEEECcccccc-------cCHHHHHHHhc-CCCcEEEEECC
Confidence 89999999999999988887643 33333 35566899999997321 12234444432 45789999999
Q ss_pred CCcCHHHHHHHHHHHHhc
Q 041042 233 YNINVNKILKFITAKLFD 250 (268)
Q Consensus 233 ~~~~i~~~f~~l~~~i~~ 250 (268)
+|.|++++|++|.+.+..
T Consensus 388 tg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 388 KGEGLEKLEESIYRETQE 405 (482)
T ss_dssp GTCCHHHHHHHHHHHTHH
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999987663
No 138
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.86 E-value=1.5e-21 Score=169.98 Aligned_cols=136 Identities=14% Similarity=0.195 Sum_probs=101.0
Q ss_pred CCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHH
Q 041042 113 SPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLT----------SRCTLKSVIRWYQQAR 182 (268)
Q Consensus 113 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~----------~~~s~~~~~~~~~~i~ 182 (268)
.+|+|... ..+.++ .+.+++|||+||++++.+|.+||++++++|+|||++ +.++|++...|++.+.
T Consensus 152 ~~TiGi~~--~~~~~~--~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~ 227 (327)
T 3ohm_A 152 VPTTGIIE--YPFDLQ--SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII 227 (327)
T ss_dssp CCCCSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHH
T ss_pred CceeeEEE--EEEEee--ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHh
Confidence 34455432 334444 478999999999999999999999999999999665 6678888888888876
Q ss_pred HhC--CCCceEEEEeCCCCCC-CC---------Cccc-hhchHHHHHHHH----------HHhCCeEEEEcCCCCcCHHH
Q 041042 183 KCN--QTAIPIIIGTKFDDFI-QL---------PIDL-QWTIASQARAYA----------KALNATLFFSSATYNINVNK 239 (268)
Q Consensus 183 ~~~--~~~~~ilvgnK~Dl~~-~~---------~~~~-~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~ 239 (268)
... .+.|+||+|||+||.. ++ ++-. ..+..+++.+++ +..++.+++|||+++.||++
T Consensus 228 ~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~ 307 (327)
T 3ohm_A 228 TYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRF 307 (327)
T ss_dssp TSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHH
T ss_pred hhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHH
Confidence 542 3556679999999731 00 0000 023467777774 34567789999999999999
Q ss_pred HHHHHHHHHhcCc
Q 041042 240 ILKFITAKLFDIP 252 (268)
Q Consensus 240 ~f~~l~~~i~~~~ 252 (268)
+|..+.+.+++..
T Consensus 308 vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 308 VFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998765
No 139
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.86 E-value=2.8e-21 Score=163.77 Aligned_cols=168 Identities=12% Similarity=0.040 Sum_probs=110.9
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCC-CCCCCCCC-cceeeEEEEEEECCeEEEEEEEeCCCccccccch--------
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDE-KEQGGSPG-EGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHL-------- 149 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~-~~~~~~~t-~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------- 149 (268)
....+||+|+|.+|||||||+++|++.. +...+.++ +..+.....+..++. .+.+|||+|+..+....
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNR--EIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTE--EEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCC--EEEEEECcCCCCCCCCHHHHHHHHH
Confidence 3446999999999999999999999887 55455554 444444455556654 48899999987654322
Q ss_pred ---hhhhcCCcEEEEEEeCCChhhH-HHHHHHHHHHHHhCCCCceEEEE-eCCCCCCCCCccchhchH----HHHHHHHH
Q 041042 150 ---PVACKDSIAILFMFDLTSRCTL-KSVIRWYQQARKCNQTAIPIIIG-TKFDDFIQLPIDLQWTIA----SQARAYAK 220 (268)
Q Consensus 150 ---~~~~~~a~~vilv~D~~~~~s~-~~~~~~~~~i~~~~~~~~~ilvg-nK~Dl~~~~~~~~~~~~~----~~~~~~~~ 220 (268)
..+++.+|++|+|||+++.... ..+..|+..+.......++|+|. ||+|+. ......... ++++.+++
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~---~~~~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLN---GGSLMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT---TCCHHHHHHHCCCHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccC---CccHHHHHHhcchHHHHHHHH
Confidence 2367899999999999863322 22334444332222234666555 599972 111000000 44566777
Q ss_pred HhCCeE-----EEEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 221 ALNATL-----FFSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 221 ~~~~~~-----~~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
..+..+ +++||++|.|++++|+.|.+.+....
T Consensus 174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 776543 67999999999999999999887754
No 140
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=2e-20 Score=168.55 Aligned_cols=162 Identities=16% Similarity=0.100 Sum_probs=108.0
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcC---CCCCCCCC--CcceeeEEEEEEE-------------C--C----eEEEEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGD---EKEQGGSP--GEGLNMMDKTLLV-------------R--G----ARISYSIW 137 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~---~~~~~~~~--t~~~~~~~~~~~~-------------~--~----~~~~l~i~ 137 (268)
..++|+++|..++|||||+++|.+. .+.....+ |+...+....+.. + + ....+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 4699999999999999999999854 33334444 5655555444322 1 2 13789999
Q ss_pred eCCCccccccchhhhhcCCcEEEEEEeCCC----hhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHH
Q 041042 138 EVTGDAKAQDHLPVACKDSIAILFMFDLTS----RCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIAS 213 (268)
Q Consensus 138 Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~----~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~ 213 (268)
||+|++.|.......+..+|++|+|+|+++ .++++.+..| ... ...+.|||+||+|+. .........+
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l-~~~~iivv~NK~Dl~---~~~~~~~~~~ 158 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL-GIDKIIIVQNKIDLV---DEKQAEENYE 158 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT-TCCCEEEEEECTTSS---CTTTTTTHHH
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc-CCCeEEEEEEccCCC---CHHHHHHHHH
Confidence 999999998777777788999999999985 4555554433 222 123457999999972 2222223456
Q ss_pred HHHHHHHH---hCCeEEEEcCCCCcCHHHHHHHHHHHHhcC
Q 041042 214 QARAYAKA---LNATLFFSSATYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 214 ~~~~~~~~---~~~~~~~~Sa~~~~~i~~~f~~l~~~i~~~ 251 (268)
++.++++. .+++++++||++|.|++++|+.|.+.+...
T Consensus 159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 77777765 367899999999999999999999877644
No 141
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.85 E-value=5.5e-21 Score=165.56 Aligned_cols=168 Identities=14% Similarity=0.117 Sum_probs=115.8
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCCcc---------ccccchhh
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQ-GGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA---------KAQDHLPV 151 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~ 151 (268)
...+|+++|.+|||||||++++++..+.. ...+.+..+.....+..+ ...+.+|||+|++ .+......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 45689999999999999999999987531 222211112211223333 3568899999987 23445567
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCC-eEEEEc
Q 041042 152 ACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNA-TLFFSS 230 (268)
Q Consensus 152 ~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S 230 (268)
+++.+|++++|+|+++ +.....|+..... ..+.|.|+|+||+|+. . .+....+.+.++++.+++ .++++|
T Consensus 85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~-~~~~P~ilvlNK~D~~----~-~~~~~~~~l~~l~~~~~~~~~i~iS 155 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR-EGKAPVILAVNKVDNV----Q-EKADLLPHLQFLASQMNFLDIVPIS 155 (301)
T ss_dssp CCCCEEEEEEEEETTC---CCHHHHHHHHHHH-SSSSCEEEEEESTTTC----C-CHHHHHHHHHHHHTTSCCSEEEECC
T ss_pred HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH-hcCCCEEEEEECcccC----c-cHHHHHHHHHHHHHhcCcCceEEEE
Confidence 7899999999999977 3333444433322 2345668999999962 1 123345667777777776 789999
Q ss_pred CCCCcCHHHHHHHHHHHHhcCccchhcccC
Q 041042 231 ATYNINVNKILKFITAKLFDIPWTLERNLT 260 (268)
Q Consensus 231 a~~~~~i~~~f~~l~~~i~~~~~~~~~~~~ 260 (268)
|++|.|++++++.+.+.+.+.++..+.+..
T Consensus 156 A~~g~~v~~l~~~i~~~l~~~~~~~~~~~~ 185 (301)
T 1ega_A 156 AETGLNVDTIAAIVRKHLPEATHHFPEDYI 185 (301)
T ss_dssp TTTTTTHHHHHHHHHTTCCBCCCSSCTTCC
T ss_pred CCCCCCHHHHHHHHHHhCCcCCCCCCcccc
Confidence 999999999999999988776655544333
No 142
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.85 E-value=3e-21 Score=168.69 Aligned_cols=121 Identities=16% Similarity=0.215 Sum_probs=93.3
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHhC--CCCceEEEEeCC
Q 041042 130 ARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLT----------SRCTLKSVIRWYQQARKCN--QTAIPIIIGTKF 197 (268)
Q Consensus 130 ~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~----------~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~ 197 (268)
..+.+++|||+||++++.+|..||++++++|+|||++ +..+|.+...|+..+.... .+.|+||+|||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 4578999999999999999999999999999999999 7889999999988887642 355567999999
Q ss_pred CCCCC----------CCccchhchHHHHHHHHHH-h--------------------------CCeEEEEcCCCCcCHHHH
Q 041042 198 DDFIQ----------LPIDLQWTIASQARAYAKA-L--------------------------NATLFFSSATYNINVNKI 240 (268)
Q Consensus 198 Dl~~~----------~~~~~~~~~~~~~~~~~~~-~--------------------------~~~~~~~Sa~~~~~i~~~ 240 (268)
||... .++-......+++.+++.. + ++.+++|||+++.||+.+
T Consensus 239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v 318 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV 318 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence 97310 0000011124455444432 2 366788999999999999
Q ss_pred HHHHHHHHhc
Q 041042 241 LKFITAKLFD 250 (268)
Q Consensus 241 f~~l~~~i~~ 250 (268)
|..+.+.|++
T Consensus 319 F~~v~~~Il~ 328 (340)
T 4fid_A 319 FMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999987
No 143
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.85 E-value=1.9e-20 Score=156.68 Aligned_cols=165 Identities=12% Similarity=0.100 Sum_probs=109.9
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCC--CcceeeEEEEEEECCeEEEEEEEeCCCc-----------cccc
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSP--GEGLNMMDKTLLVRGARISYSIWEVTGD-----------AKAQ 146 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~Dt~G~-----------~~~~ 146 (268)
....+||+|+|.+|||||||+++|++..+.....+ +++.+.....+.+++. .+.+|||||. +.+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHHHH
Confidence 44579999999999999999999999887655555 3444555556666665 4789999993 3344
Q ss_pred cchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh---CCCCceEEEEeCCCCCCCCCccchh-ch---HHHHHHHH
Q 041042 147 DHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKC---NQTAIPIIIGTKFDDFIQLPIDLQW-TI---ASQARAYA 219 (268)
Q Consensus 147 ~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~---~~~~~~ilvgnK~Dl~~~~~~~~~~-~~---~~~~~~~~ 219 (268)
.....+++++|++|+|+|+++.... ...|+..+... ....|.+||+||+|+. ...... .. .+.++.++
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~---~~~~~~~~i~~~~~~l~~l~ 178 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDL---GDTNLHDYLREAPEDIQDLM 178 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccC---CcccHHHHHHhchHHHHHHH
Confidence 4555667889999999998764441 12333333221 1233668999999973 221111 11 24688889
Q ss_pred HHhCCeEEEEcCCCC-----cCHHHHHHHHHHHHhcC
Q 041042 220 KALNATLFFSSATYN-----INVNKILKFITAKLFDI 251 (268)
Q Consensus 220 ~~~~~~~~~~Sa~~~-----~~i~~~f~~l~~~i~~~ 251 (268)
+..+..|+.+++..+ .++.++|..+.+.+.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 179 DIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp HHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 999999988877754 68999999988877654
No 144
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.85 E-value=1.7e-21 Score=177.57 Aligned_cols=155 Identities=16% Similarity=0.246 Sum_probs=105.8
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccch--------hhh
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKE-QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHL--------PVA 152 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~ 152 (268)
..+||+++|.+|||||||+|+|.+..+. ....++++.++....+.+++.. +.+|||+|...+.... ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIP--VQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEE--EEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEE--EEEEECCccccchhHHHHHHHHHHhhh
Confidence 3589999999999999999999987542 3344555666666677778755 6899999986654332 346
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCC
Q 041042 153 CKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSAT 232 (268)
Q Consensus 153 ~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 232 (268)
++.+|++++|||+++..++.. ..|++.+. ..|.|+|+||+|+. ... . .. ...++. .+.+++++||+
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~----~~piivV~NK~Dl~---~~~-~-~~--~~~~~~--~~~~~i~iSAk 366 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK----HRPLILVMNKIDLV---EKQ-L-IT--SLEYPE--NITQIVHTAAA 366 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT----TSCEEEEEECTTSS---CGG-G-ST--TCCCCT--TCCCEEEEBTT
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc----CCcEEEEEECCCCC---cch-h-hH--HHHHhc--cCCcEEEEECC
Confidence 789999999999998877655 45665553 24668999999973 211 1 10 111111 45789999999
Q ss_pred CCcCHHHHHHHHHHHHhcCc
Q 041042 233 YNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 233 ~~~~i~~~f~~l~~~i~~~~ 252 (268)
+|.|++++|+.|.+.+....
T Consensus 367 tg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 367 QKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp TTBSHHHHHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHHHhccC
Confidence 99999999999999887654
No 145
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.85 E-value=1e-20 Score=172.00 Aligned_cols=160 Identities=14% Similarity=0.239 Sum_probs=106.1
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccch-----------
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKE-QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHL----------- 149 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----------- 149 (268)
..+||+++|.+|||||||+|++.+..+. ....++++.+.....+.++|.. +.+|||+|+.++....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~--~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE--EEEEECCCCccccccchhhHHHHHHHH
Confidence 3589999999999999999999988642 2334444455556677888875 6799999985433221
Q ss_pred -hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHH-----HHHHHHHhC
Q 041042 150 -PVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQ-----ARAYAKALN 223 (268)
Q Consensus 150 -~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~ 223 (268)
..+++.+|++++|+|+++..++++. .+...+.. .+.+.|+|+||+|+. .. .....++ .+.++...+
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~Dl~---~~--~~~~~~~~~~~~~~~~~~~~~ 328 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKWDLV---VH--REKRYDEFTKLFREKLYFIDY 328 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGS---TT--GGGCHHHHHHHHHHHCGGGTT
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCC---Cc--hhhHHHHHHHHHHHHhccCCC
Confidence 2467889999999999987776653 23333332 245567999999972 21 1111221 223333346
Q ss_pred CeEEEEcCCCCcCHHHHHHHHHHHHhcC
Q 041042 224 ATLFFSSATYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 224 ~~~~~~Sa~~~~~i~~~f~~l~~~i~~~ 251 (268)
++++++||++|.|++++|+.+.+.+.+.
T Consensus 329 ~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 329 SPLIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp SCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 8999999999999999999998876543
No 146
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.85 E-value=1.6e-21 Score=166.81 Aligned_cols=161 Identities=12% Similarity=0.113 Sum_probs=98.6
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCC-CCCCC-------CCCcceeeEEEEEEECCeEEEEEEEeCCCccc-------cc
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDE-KEQGG-------SPGEGLNMMDKTLLVRGARISYSIWEVTGDAK-------AQ 146 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~-~~~~~-------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~ 146 (268)
..++|+|+|.+|+|||||+|++.+.. +...+ .+|++.++....+..++..+.+.+|||+|... +.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 36999999999999999999977654 44444 67778777766666677778999999999732 22
Q ss_pred cch-------hhhhc-------------CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCcc
Q 041042 147 DHL-------PVACK-------------DSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPID 206 (268)
Q Consensus 147 ~~~-------~~~~~-------------~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~ 206 (268)
.+. ..|+. .+|+++++++.++..-...-..+++.+.. ..|.|+|+||+|+ +...
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~---~~~~ 160 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADT---LTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGG---SCHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCC---CCHH
Confidence 332 33333 37899999987653222222344454433 5566899999997 3333
Q ss_pred chhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHH
Q 041042 207 LQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248 (268)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~i 248 (268)
......+.+.+.....+++++++||++++|+++++++|.+.+
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 333335566777778899999999999999999999998754
No 147
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.84 E-value=3.2e-20 Score=164.52 Aligned_cols=163 Identities=15% Similarity=0.113 Sum_probs=112.6
Q ss_pred EE-EEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcc---------ccccchhhhh
Q 041042 84 LK-ISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA---------KAQDHLPVAC 153 (268)
Q Consensus 84 ~k-i~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 153 (268)
++ |+++|.+|||||||+|++.+..+.....+....+.....+.+++. .+.+|||+|.- .|..... .+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl~-~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTLS-EA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence 55 999999999999999999998764333333344556677888884 47899999962 2333332 47
Q ss_pred cCCcEEEEEEeCCChh--hHHHHHHHHHHHHHhCC-CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHh---CCeEE
Q 041042 154 KDSIAILFMFDLTSRC--TLKSVIRWYQQARKCNQ-TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKAL---NATLF 227 (268)
Q Consensus 154 ~~a~~vilv~D~~~~~--s~~~~~~~~~~i~~~~~-~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 227 (268)
..+|++++|+|+++.. +++.+..|.+.+..... +.|.|+|+||+|+ ++.. .....+.+..+++.. +.+++
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl---~~~~-~~~~~~~~~~l~~~l~~~~~~~~ 331 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDK---INGD-LYKKLDLVEKLSKELYSPIFDVI 331 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGG---CCSC-HHHHHHHHHHHHHHHCSCEEEEE
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCC---CCch-HHHHHHHHHHHHHHhcCCCCcEE
Confidence 8999999999999887 67777777777766543 4455799999997 3221 111233444555665 34688
Q ss_pred EEcCCCCcCHHHHHHHHHHHHhcCcc
Q 041042 228 FSSATYNINVNKILKFITAKLFDIPW 253 (268)
Q Consensus 228 ~~Sa~~~~~i~~~f~~l~~~i~~~~~ 253 (268)
++||++|.|++++++.|.+.+....+
T Consensus 332 ~~SA~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 332 PISALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred EEECCCCcCHHHHHHHHHHHhcccCC
Confidence 99999999999999999988766553
No 148
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.84 E-value=3.2e-21 Score=155.57 Aligned_cols=110 Identities=18% Similarity=0.164 Sum_probs=85.2
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCC---CCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC--
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQ---GGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKD-- 155 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~-- 155 (268)
...+||+++|.+|||||||+++|.+..+.. .+.++++.++ ..+.+.+|||+|++.+...+..+++.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 345899999999999999999999987644 2333333222 34568899999999998888888876
Q ss_pred --CcEEEEEEeCC-ChhhHHHHHHHHHHHHHhC-----CCCceEEEEeCCCC
Q 041042 156 --SIAILFMFDLT-SRCTLKSVIRWYQQARKCN-----QTAIPIIIGTKFDD 199 (268)
Q Consensus 156 --a~~vilv~D~~-~~~s~~~~~~~~~~i~~~~-----~~~~~ilvgnK~Dl 199 (268)
+|++|+|||++ +.++|..+..|+..+.... .+.|.+||+||+|+
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 168 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 168 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence 89999999999 9999999999988876542 34555799999997
No 149
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.84 E-value=8.6e-22 Score=174.68 Aligned_cols=163 Identities=10% Similarity=0.119 Sum_probs=96.1
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCC-CCCCCC--------CCcceeeEEEEEEECCeEEEEEEEeCCCc-------ccc
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDE-KEQGGS--------PGEGLNMMDKTLLVRGARISYSIWEVTGD-------AKA 145 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~-~~~~~~--------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~-------~~~ 145 (268)
..++|+|+|.+|+|||||++++.+.. +...+. +|++.++....+..++..+.+++|||+|+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 46899999999999999999976643 433332 46666555555556677889999999998 777
Q ss_pred ccchh-------hhhcCCcEE-----------EEEEeCCC-hhhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCCc
Q 041042 146 QDHLP-------VACKDSIAI-----------LFMFDLTS-RCTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLPI 205 (268)
Q Consensus 146 ~~~~~-------~~~~~a~~v-----------ilv~D~~~-~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~ 205 (268)
..+.. .|++.++++ ++||++++ ..++..+. .|+..+ ....++|+|+||+|+ ...
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl---~~~ 189 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADT---LTL 189 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSS---SCH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCC---CCH
Confidence 77776 677655443 47777765 55666665 454443 345566899999997 222
Q ss_pred cchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHHhcC
Q 041042 206 DLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~i~~~ 251 (268)
.......+++.++++.++++++++||++|.| ++.|.++.+.+.+.
T Consensus 190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 1111113678888888999999999999999 88888888877654
No 150
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.84 E-value=1.2e-21 Score=177.98 Aligned_cols=154 Identities=12% Similarity=0.166 Sum_probs=99.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcc--------ccccchhhhhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA--------KAQDHLPVACKD 155 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~--------~~~~~~~~~~~~ 155 (268)
.||+++|.+|||||||+|+|++..+. ...++.|.+.......+......+++|||+|++ .+...+..++++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 69999999999999999999987753 233344554433333333333468999999986 566677888999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCC-eEEEEcCCCC
Q 041042 156 SIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNA-TLFFSSATYN 234 (268)
Q Consensus 156 a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 234 (268)
||++|+|+|+++..++.+ .|+..+.+ ..+.|.+||+||+|+... . .++.++. ..++ +++++||++|
T Consensus 83 ad~il~vvD~~~~~~~~d--~~~~~~l~-~~~~pvilv~NK~D~~~~---~------~~~~~~~-~lg~~~~~~iSA~~g 149 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAAD--EEVAKILY-RTKKPVVLAVNKLDNTEM---R------ANIYDFY-SLGFGEPYPISGTHG 149 (436)
T ss_dssp CSEEEEEEETTTCSCHHH--HHHHHHHT-TCCSCEEEEEECCCC--------------CCCSSG-GGSSCCCEECBTTTT
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHH-HcCCCEEEEEECccCccc---h------hhHHHHH-HcCCCCeEEEeCcCC
Confidence 999999999998777654 33333322 235566899999997311 0 1111222 3455 7899999999
Q ss_pred cCHHHHHHHHHHHHhcC
Q 041042 235 INVNKILKFITAKLFDI 251 (268)
Q Consensus 235 ~~i~~~f~~l~~~i~~~ 251 (268)
.|++++|+++.+.+.+.
T Consensus 150 ~gv~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFKNI 166 (436)
T ss_dssp BTHHHHHHHHHHTGGGC
T ss_pred CChHHHHHHHHHhcCcc
Confidence 99999999999888653
No 151
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.83 E-value=8.1e-20 Score=164.76 Aligned_cols=164 Identities=13% Similarity=0.110 Sum_probs=115.0
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCC---CCCCCCC--CcceeeEEEEEEE-------------C--C----eEEEEE
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDE---KEQGGSP--GEGLNMMDKTLLV-------------R--G----ARISYS 135 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~---~~~~~~~--t~~~~~~~~~~~~-------------~--~----~~~~l~ 135 (268)
....++|+++|..++|||||+++|.+.. +.....+ |+...+....+.. + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 3457999999999999999999998542 3333333 5555554433322 1 1 137899
Q ss_pred EEeCCCccccccchhhhhcCCcEEEEEEeCCC----hhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhch
Q 041042 136 IWEVTGDAKAQDHLPVACKDSIAILFMFDLTS----RCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTI 211 (268)
Q Consensus 136 i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~----~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~ 211 (268)
+|||+|++.|.......+..+|++|+|+|+++ .++++.+..| .... ..+.|+|+||+|+ .........
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~~-~~~iivviNK~Dl---~~~~~~~~~ 158 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QIIG-QKNIIIAQNKIEL---VDKEKALEN 158 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHHT-CCCEEEEEECGGG---SCHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHcC-CCcEEEEEECccC---CCHHHHHHH
Confidence 99999999988777777788999999999985 4455554433 2222 2344689999997 222211233
Q ss_pred HHHHHHHHHH---hCCeEEEEcCCCCcCHHHHHHHHHHHHhcC
Q 041042 212 ASQARAYAKA---LNATLFFSSATYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 212 ~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~f~~l~~~i~~~ 251 (268)
.+++.++++. .+++++++||++|.|++++++.|.+.+...
T Consensus 159 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 159 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 5566666665 467999999999999999999999877644
No 152
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.83 E-value=8.3e-20 Score=165.94 Aligned_cols=159 Identities=9% Similarity=0.085 Sum_probs=106.6
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCC--C-----------------------------CCCCCCCcceeeEEEEEEEC
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDE--K-----------------------------EQGGSPGEGLNMMDKTLLVR 128 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~--~-----------------------------~~~~~~t~~~~~~~~~~~~~ 128 (268)
....++|+++|.+++|||||+++|+... + .....++++.+.....+..+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 3446899999999999999999995431 1 11112333444443444444
Q ss_pred CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhh---HH---HHHHHHHHHHHhCCCCc-eEEEEeCCCCCC
Q 041042 129 GARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCT---LK---SVIRWYQQARKCNQTAI-PIIIGTKFDDFI 201 (268)
Q Consensus 129 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s---~~---~~~~~~~~i~~~~~~~~-~ilvgnK~Dl~~ 201 (268)
...+.||||+|+++|......+++.+|++|+|+|+++... |+ ...+.+..+.. .+.+ .|||+||+|+..
T Consensus 94 --~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 --KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPT 169 (439)
T ss_pred --CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCcc
Confidence 4578999999999999888889999999999999987532 22 11222222222 2445 469999999721
Q ss_pred -CCCccchhchHHHHHHHHHHhCC------eEEEEcCCCCcCHHHHHH
Q 041042 202 -QLPIDLQWTIASQARAYAKALNA------TLFFSSATYNINVNKILK 242 (268)
Q Consensus 202 -~~~~~~~~~~~~~~~~~~~~~~~------~~~~~Sa~~~~~i~~~f~ 242 (268)
...........+++..+++..++ +++++||++|.|++++++
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 01112233445667777777654 699999999999999765
No 153
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.82 E-value=2e-20 Score=172.00 Aligned_cols=158 Identities=15% Similarity=0.096 Sum_probs=99.9
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCC--CCCC---------------------------CCCCcceeeEEEEEEECCeE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDE--KEQG---------------------------GSPGEGLNMMDKTLLVRGAR 131 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~--~~~~---------------------------~~~t~~~~~~~~~~~~~~~~ 131 (268)
...+||+++|.+|+|||||+++|++.. +... .....|.++......++...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 346999999999999999999997541 1100 00011333333333444555
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHH-----HHHHHHHHHhCCCCceEEEEeCCCCCCCCCcc
Q 041042 132 ISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSV-----IRWYQQARKCNQTAIPIIIGTKFDDFIQLPID 206 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~-----~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~ 206 (268)
..+.||||+|+++|......+++.+|++|+|+|+++..++..+ ..+...+.......+.|||+||+|+... ...
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~-~~~ 189 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW-SQQ 189 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTT-CHH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccc-hHH
Confidence 6799999999999999999999999999999999987654332 1111122222222345799999997210 011
Q ss_pred chhchHHHHHHHHHHhC-----CeEEEEcCCCCcCHHH
Q 041042 207 LQWTIASQARAYAKALN-----ATLFFSSATYNINVNK 239 (268)
Q Consensus 207 ~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 239 (268)
......+++..+.+..+ ++++++||++|.|+++
T Consensus 190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 11223455555655554 5789999999999975
No 154
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.82 E-value=5.3e-20 Score=172.28 Aligned_cols=160 Identities=10% Similarity=0.106 Sum_probs=112.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCC--CC-----CCC------CCCcceeeEEEEEEE-----CCeEEEEEEEeCCCccc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDE--KE-----QGG------SPGEGLNMMDKTLLV-----RGARISYSIWEVTGDAK 144 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~--~~-----~~~------~~t~~~~~~~~~~~~-----~~~~~~l~i~Dt~G~~~ 144 (268)
..+|+|+|..++|||||+++|+... +. ..+ ..+.|.++....+.+ ++..+.+++|||+|+++
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 4799999999999999999997621 11 111 112344443333332 56678999999999999
Q ss_pred cccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCC
Q 041042 145 AQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNA 224 (268)
Q Consensus 145 ~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (268)
|......+++.+|++|+|+|+++..+++....|...... +.|+|+|+||+|+. ... ..+...++.+.+++
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~---~ipiIvViNKiDl~----~a~---~~~v~~ei~~~lg~ 153 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM---DLEVVPVLNKIDLP----AAD---PERVAEEIEDIVGI 153 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT---TCEEEEEEECTTST----TCC---HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC---CCCEEEeeeccCcc----ccc---HHHHHHHHHHHhCC
Confidence 999999999999999999999998888888888766542 44568999999972 211 23345566666776
Q ss_pred e---EEEEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 225 T---LFFSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 225 ~---~~~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
. ++++||++|.|++++|+.+.+.+....
T Consensus 154 ~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 154 DATDAVRCSAKTGVGVQDVLERLVRDIPPPE 184 (599)
T ss_dssp CCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred CcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence 4 899999999999999999999886543
No 155
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.82 E-value=4.8e-20 Score=150.65 Aligned_cols=160 Identities=15% Similarity=0.165 Sum_probs=102.5
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccc----------cccchhh
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK----------AQDHLPV 151 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 151 (268)
...+|+++|.+|||||||++++.+..+...+.++.|..+....+.+++ .+.+|||+|... +......
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 358999999999999999999998876555566777665544444444 467999999742 2333334
Q ss_pred hh---cCCcEEEEEEeCCChhhHHH--HHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhC--C
Q 041042 152 AC---KDSIAILFMFDLTSRCTLKS--VIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALN--A 224 (268)
Q Consensus 152 ~~---~~a~~vilv~D~~~~~s~~~--~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~ 224 (268)
++ ..++++++|+|+++..++.. +..|+.. ...+.++|+||+|+ ++...+....+.+..++.+.+ +
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-----~~~~~~~v~nK~D~---~s~~~~~~~~~~~~~~~~~~~~~~ 173 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-----SNIAVLVLLTKADK---LASGARKAQLNMVREAVLAFNGDV 173 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGG---SCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred HHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-----cCCCeEEEEecccC---CCchhHHHHHHHHHHHHHhcCCCC
Confidence 44 57899999999988766542 3344432 23445688999996 333222222456666776664 5
Q ss_pred eEEEEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 225 TLFFSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 225 ~~~~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
.++++||+++.|++++++.|.+.+.+.+
T Consensus 174 ~~~~~Sal~~~~~~~l~~~l~~~~~~~~ 201 (210)
T 1pui_A 174 QVETFSSLKKQGVDKLRQKLDTWFSEMQ 201 (210)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHC---
T ss_pred ceEEEeecCCCCHHHHHHHHHHHHhhcc
Confidence 6788999999999999999988776543
No 156
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.82 E-value=1.4e-22 Score=187.16 Aligned_cols=161 Identities=12% Similarity=0.084 Sum_probs=115.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
..+|+++|.+++|||||+++|.+..+.....++++.++....+..++ ...+.||||||++.|..++..+++.+|++|+|
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 46899999999999999999998876666666666555544444422 12588999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHH---HHHh--CCeEEEEcCCCCcCH
Q 041042 163 FDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAY---AKAL--NATLFFSSATYNINV 237 (268)
Q Consensus 163 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~Sa~~~~~i 237 (268)
+|+++....+....| ..+.. .+.|+|||+||+|+... ......++...+ +..+ .++++++||++|.|+
T Consensus 83 VDa~dg~~~qt~e~l-~~~~~--~~vPiIVViNKiDl~~~----~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI 155 (537)
T 3izy_P 83 VAADDGVMKQTVESI-QHAKD--AHVPIVLAINKCDKAEA----DPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENM 155 (537)
T ss_dssp CBSSSCCCHHHHHHH-HHHHT--TTCCEEECCBSGGGTTT----SCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSS
T ss_pred EECCCCccHHHHHHH-HHHHH--cCCcEEEEEeccccccc----chHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCc
Confidence 999986665554433 23332 24456799999997321 111112222221 2222 357899999999999
Q ss_pred HHHHHHHHHHHhcC
Q 041042 238 NKILKFITAKLFDI 251 (268)
Q Consensus 238 ~~~f~~l~~~i~~~ 251 (268)
+++|+.+...+...
T Consensus 156 ~eLle~I~~l~~~~ 169 (537)
T 3izy_P 156 MALAEATIALAEML 169 (537)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred hhHHHHHHHhhhcc
Confidence 99999999877544
No 157
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.82 E-value=6.8e-21 Score=173.00 Aligned_cols=158 Identities=12% Similarity=0.126 Sum_probs=108.7
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcC--CCCCCC-----------------------------CCCcceeeEEEEEEECCe
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGD--EKEQGG-----------------------------SPGEGLNMMDKTLLVRGA 130 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~--~~~~~~-----------------------------~~t~~~~~~~~~~~~~~~ 130 (268)
..+||+++|..++|||||+++|+.. .+.... ...+..+.. ...++..
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~--~~~~~~~ 82 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLT--FMRFETK 82 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEECS
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEee--EEEEecC
Confidence 4689999999999999999999864 232110 111112221 1223344
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-----CCCc-eEEEEeCCCCCCC-C
Q 041042 131 RISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCN-----QTAI-PIIIGTKFDDFIQ-L 203 (268)
Q Consensus 131 ~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~-----~~~~-~ilvgnK~Dl~~~-~ 203 (268)
...+.+|||+|+++|......+++.+|++|+|+|+++ .+|+.+..|..+.+++. .+.+ .|||+||+|+... .
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~ 161 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY 161 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence 5679999999999999888889999999999999998 78887655544433321 1333 4799999997311 0
Q ss_pred CccchhchHHHHHHHHHHhC-----CeEEEEcCCCCcCHHHHHH
Q 041042 204 PIDLQWTIASQARAYAKALN-----ATLFFSSATYNINVNKILK 242 (268)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~f~ 242 (268)
.++......++++++++..+ ++++++||++|.|+.++++
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 01112344678888888876 6799999999999986654
No 158
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.82 E-value=1.2e-19 Score=152.77 Aligned_cols=166 Identities=10% Similarity=0.038 Sum_probs=104.0
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceee--EEEEEEECCeEEEEEEEeCCCc--------cccccchh
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNM--MDKTLLVRGARISYSIWEVTGD--------AKAQDHLP 150 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~l~i~Dt~G~--------~~~~~~~~ 150 (268)
...+||+|+|.+|||||||+|++++..+.....++.+.+. ....+..++ ..+.+|||||. +.+.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 3469999999999999999999999876544333323322 233444555 45889999996 33333333
Q ss_pred hhh----cCCcEEEEEEeCCChhhH-HHHHHHHHHHHHhC-CCCceEEEEeCCCCCCCCCccchhch----HHHHHHHHH
Q 041042 151 VAC----KDSIAILFMFDLTSRCTL-KSVIRWYQQARKCN-QTAIPIIIGTKFDDFIQLPIDLQWTI----ASQARAYAK 220 (268)
Q Consensus 151 ~~~----~~a~~vilv~D~~~~~s~-~~~~~~~~~i~~~~-~~~~~ilvgnK~Dl~~~~~~~~~~~~----~~~~~~~~~ 220 (268)
.++ +++|++|+|+|+++.... ..+..|+..+.... .+.+.||++||+|+.. ....... .+.++.+.+
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~---~~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG---GSLHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC---CCHHHHHhhcccHHHHHHHH
Confidence 333 899999999999853221 12223333332111 1334579999999731 1111111 145788889
Q ss_pred HhCCeEEEEcCCC-----CcCHHHHHHHHHHHHhcC
Q 041042 221 ALNATLFFSSATY-----NINVNKILKFITAKLFDI 251 (268)
Q Consensus 221 ~~~~~~~~~Sa~~-----~~~i~~~f~~l~~~i~~~ 251 (268)
..+..|+..+++. +.|++++++.|.+.+.+.
T Consensus 174 ~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 174 ECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 9998888776655 589999999998888754
No 159
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.82 E-value=2.9e-19 Score=167.07 Aligned_cols=161 Identities=12% Similarity=0.179 Sum_probs=115.0
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcC--CCCC-----CCCC------CcceeeEEE--EEEE---CCeEEEEEEEeCCCcc
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGD--EKEQ-----GGSP------GEGLNMMDK--TLLV---RGARISYSIWEVTGDA 143 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~--~~~~-----~~~~------t~~~~~~~~--~~~~---~~~~~~l~i~Dt~G~~ 143 (268)
...+|+++|..++|||||+++|+.. .+.. .... +.|.++... .+.+ ++..+.+++|||+|++
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 4579999999999999999999752 1111 1100 112222211 2222 5667899999999999
Q ss_pred ccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhC
Q 041042 144 KAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALN 223 (268)
Q Consensus 144 ~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 223 (268)
+|......+++.+|++|+|+|+++..+++....|...... +.|+|+|+||+|+. ... ..+...++.+.++
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~---~ipiIvviNKiDl~----~a~---~~~v~~el~~~lg 154 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ---DLVIIPVINKIDLP----SAD---VDRVKKQIEEVLG 154 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT---TCEEEEEEECTTST----TCC---HHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC---CCCEEEEEeccCcc----ccC---HHHHHHHHHHhhC
Confidence 9998888999999999999999999888888888765542 45567999999972 211 2334455666667
Q ss_pred C---eEEEEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 224 A---TLFFSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 224 ~---~~~~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
+ +++++||++|.||+++|+++++.+....
T Consensus 155 ~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 155 LDPEEAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp CCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred CCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence 6 4899999999999999999999886543
No 160
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.82 E-value=1.4e-20 Score=163.04 Aligned_cols=134 Identities=10% Similarity=0.040 Sum_probs=109.9
Q ss_pred HHHHHHhcCCCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChh-hHHHHH
Q 041042 98 SFLEKYVGDEKE-QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRC-TLKSVI 175 (268)
Q Consensus 98 sLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~-s~~~~~ 175 (268)
+|+.+++.+.|. ..+.||+|..+. ..+..++ .+++||+ +++|..+++.|++++|++|+|||+++++ +|+.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688999999998 889999995544 3332233 6899999 9999999999999999999999999998 799999
Q ss_pred HHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhC--CeEEEEcCCCCcCHHHHHHHHHH
Q 041042 176 RWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALN--ATLFFSSATYNINVNKILKFITA 246 (268)
Q Consensus 176 ~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~f~~l~~ 246 (268)
.|+..+.. .+.|+|||+||+||. + .+.. +++.++++.++ +++++|||++|.||+++|..+..
T Consensus 106 ~~l~~~~~--~~~piilv~NK~DL~----~--~~~v-~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK--NELETVMVINKMDLY----D--EDDL-RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH--TTCEEEEEECCGGGC----C--HHHH-HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH--CCCCEEEEEeHHHcC----C--chhH-HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 99998865 355668999999972 1 1212 55777888887 89999999999999999987653
No 161
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.81 E-value=4.3e-20 Score=167.70 Aligned_cols=156 Identities=14% Similarity=0.086 Sum_probs=106.1
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCC--CCCC----------CCCCcce-------------------eeEEEEEEEC
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDE--KEQG----------GSPGEGL-------------------NMMDKTLLVR 128 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~--~~~~----------~~~t~~~-------------------~~~~~~~~~~ 128 (268)
....+||+++|..++|||||+++|+++. +... ...|++. +.......+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 3456999999999999999999998653 1111 1122211 1111112233
Q ss_pred CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-eEEEEeCCCCCCCCCccc
Q 041042 129 GARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAI-PIIIGTKFDDFIQLPIDL 207 (268)
Q Consensus 129 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~Dl~~~~~~~~ 207 (268)
.....+.+|||+|+++|......++..+|++|+|+|+++.... ....|+..+... +.+ .|+|+||+|+. ....
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~--~~~~iIvviNK~Dl~---~~~~ 174 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL--GIKHIVVAINKMDLN---GFDE 174 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT--TCCEEEEEEECTTTT---TSCH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc--CCCeEEEEEEcCcCC---cccH
Confidence 3446789999999999988888899999999999999886533 334455444443 334 47999999972 2111
Q ss_pred h--hchHHHHHHHHHHhC-----CeEEEEcCCCCcCHHHHH
Q 041042 208 Q--WTIASQARAYAKALN-----ATLFFSSATYNINVNKIL 241 (268)
Q Consensus 208 ~--~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~f 241 (268)
. ....+++.++++.++ ++++++||++|.|++++|
T Consensus 175 ~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 175 RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred HHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 1 234677888888888 789999999999999853
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.81 E-value=3.2e-20 Score=167.10 Aligned_cols=166 Identities=13% Similarity=0.104 Sum_probs=116.7
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcC--------CCCCC--C-----CCCcceeeEEEEEEECCeEEEEEEEeCCCccc
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGD--------EKEQG--G-----SPGEGLNMMDKTLLVRGARISYSIWEVTGDAK 144 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~--------~~~~~--~-----~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 144 (268)
....+||+++|.+++|||||+++|.+. .+... . ..+.|.++....+.++.....+.+|||+|+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 345699999999999999999999873 22110 0 00223333334445555556789999999999
Q ss_pred cccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-eEEEEeCCCCCCCCCccchhchHHHHHHHHHHhC
Q 041042 145 AQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAI-PIIIGTKFDDFIQLPIDLQWTIASQARAYAKALN 223 (268)
Q Consensus 145 ~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 223 (268)
|......+++.+|++|+|+|+++.... ...+|+..+... +.| .|+|+||+|+.. ..+......+++.++++.++
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~--~ip~iivviNK~Dl~~--~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV--GVPYIVVFMNKVDMVD--DPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT--TCCCEEEEEECGGGCC--CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc--CCCEEEEEEECccccC--cHHHHHHHHHHHHHHHHHhc
Confidence 988888899999999999999886543 345566665543 345 468999999721 11111223557778888776
Q ss_pred -----CeEEEEcCCCCcC------------------HHHHHHHHHHHHhc
Q 041042 224 -----ATLFFSSATYNIN------------------VNKILKFITAKLFD 250 (268)
Q Consensus 224 -----~~~~~~Sa~~~~~------------------i~~~f~~l~~~i~~ 250 (268)
++++++||++|.| +.++++.|.+.+..
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 6899999999988 77888887776653
No 163
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.80 E-value=2e-20 Score=170.88 Aligned_cols=158 Identities=12% Similarity=0.150 Sum_probs=102.3
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC--------ccccccchhh
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTG--------DAKAQDHLPV 151 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G--------~~~~~~~~~~ 151 (268)
.+...+|+|+|.+|||||||+|+|++..+. ....+.|.+.......+......+++|||+| ++.+......
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 344579999999999999999999998753 2333456665555555555556799999999 7778888889
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCC-eEEEEc
Q 041042 152 ACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNA-TLFFSS 230 (268)
Q Consensus 152 ~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S 230 (268)
+++++|++|+|+|..+.-+. ...|+..+.+. .+.|+|||+||+|+. +. .+...++. ..+. ..+++|
T Consensus 99 ~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~~-~~~pvilV~NK~D~~----~~-----~~~~~e~~-~lg~~~~~~iS 165 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVTA--ADEEVAKILYR-TKKPVVLAVNKLDNT----EM-----RANIYDFY-SLGFGEPYPIS 165 (456)
T ss_dssp HHHHCSEEEEEEESSSCSCH--HHHHHHHHHTT-CCSCEEEEEECC------------------CCSG-GGSSSSEEECC
T ss_pred hHhhCCEEEEEEeCCCCCCh--HHHHHHHHHHH-cCCCEEEEEECccch----hh-----hhhHHHHH-HcCCCceEEee
Confidence 99999999999998764332 23344333332 355668999999962 10 01111121 2232 467999
Q ss_pred CCCCcCHHHHHHHHHHHHhcC
Q 041042 231 ATYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 231 a~~~~~i~~~f~~l~~~i~~~ 251 (268)
|++|.|+.++|+.+.+.+...
T Consensus 166 A~~g~gv~~L~~~i~~~l~~~ 186 (456)
T 4dcu_A 166 GTHGLGLGDLLDAVAEHFKNI 186 (456)
T ss_dssp TTTCTTHHHHHHHHHTTGGGS
T ss_pred cccccchHHHHHHHHhhcccc
Confidence 999999999999998876543
No 164
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.80 E-value=2.7e-20 Score=161.19 Aligned_cols=165 Identities=10% Similarity=0.093 Sum_probs=89.8
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcC-CCCCCC--------CCCcceeeEEEEEEECCeEEEEEEEeCCCc-------c
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGD-EKEQGG--------SPGEGLNMMDKTLLVRGARISYSIWEVTGD-------A 143 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~-~~~~~~--------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~-------~ 143 (268)
....++|+|+|++|||||||++++.+. .+.... .+|++.......+..++....+.+|||+|+ +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 334699999999999999999998775 443332 123332222223333556678999999998 6
Q ss_pred ccccchh-------hhhcCC-------------cEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCC
Q 041042 144 KAQDHLP-------VACKDS-------------IAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQL 203 (268)
Q Consensus 144 ~~~~~~~-------~~~~~a-------------~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~ 203 (268)
.+..+.. .|++.. ++++++.+.+. .+|+.+. .+.++......+.++|+||+|+ .
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l~~~~~iilV~~K~Dl---~ 168 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAIHNKVNIVPVIAKADT---L 168 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHHTTTSCEEEEECCGGG---S
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHHHhcCCEEEEEEeCCC---C
Confidence 6666654 555433 33444433322 2344433 2334444444566899999997 2
Q ss_pred CccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHHhcC
Q 041042 204 PIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~i~~~ 251 (268)
.........+++.++++.+++++|++||++| |++++|..+.+.+.+.
T Consensus 169 ~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 169 TLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 2222223367889999999999999999999 9999999999988654
No 165
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.80 E-value=1.7e-19 Score=161.99 Aligned_cols=162 Identities=12% Similarity=0.104 Sum_probs=113.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCC-------CCCC-------CCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDE-------KEQG-------GSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDH 148 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~-------~~~~-------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 148 (268)
.+||+++|..++|||||+++|.+.. +... .....|.+.....+.++.....+.+|||+|+++|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 5899999999999999999998731 1100 0001233332233344444567889999999999888
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-eEEEEeCCCCCCCCCcc-chhchHHHHHHHHHHhC---
Q 041042 149 LPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAI-PIIIGTKFDDFIQLPID-LQWTIASQARAYAKALN--- 223 (268)
Q Consensus 149 ~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~--- 223 (268)
...+++.+|++|+|+|+++....+....| ..+... +.| .|+|+||+|+. .+. ......++++++++.++
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~--~vp~iivviNK~Dl~---~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI--GVEHVVVYVNKADAV---QDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT--TCCCEEEEEECGGGC---SCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc--CCCeEEEEEECcccC---CCHHHHHHHHHHHHHHHHHcCCCc
Confidence 88889999999999999986544433333 444332 445 36899999972 211 11234567788888876
Q ss_pred --CeEEEEcCCCCcC----------HHHHHHHHHHHHhc
Q 041042 224 --ATLFFSSATYNIN----------VNKILKFITAKLFD 250 (268)
Q Consensus 224 --~~~~~~Sa~~~~~----------i~~~f~~l~~~i~~ 250 (268)
++++++||++|.| +.++|+.|.+.+..
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 5899999999775 89999999887654
No 166
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.79 E-value=7.4e-19 Score=157.91 Aligned_cols=160 Identities=13% Similarity=0.084 Sum_probs=114.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccc----cccchhhh---hcCCc
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK----AQDHLPVA---CKDSI 157 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~~~~---~~~a~ 157 (268)
.|+|+|.+|||||||++++.+........+..........+.+++ ...+.+||++|... +..+...+ ++.++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 578999999999999999988743211111111122223344443 24578999999743 23333333 35799
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhCC---CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCC
Q 041042 158 AILFMFDLTSRCTLKSVIRWYQQARKCNQ---TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYN 234 (268)
Q Consensus 158 ~vilv~D~~~~~s~~~~~~~~~~i~~~~~---~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 234 (268)
.++.|+|++ ...+.++..|.+++..+.. ..|.|||+||+|+ .. . ...+++.+.++..+++++.+||+++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl----~~--~-~~~~~l~~~l~~~g~~vi~iSA~~g 309 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDL----LE--E-EAVKALADALAREGLAVLPVSALTG 309 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTT----SC--H-HHHHHHHHHHHTTTSCEEECCTTTC
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCCh----hh--H-HHHHHHHHHHHhcCCeEEEEECCCc
Confidence 999999998 6778888888888877642 4567899999996 21 2 3345566666677889999999999
Q ss_pred cCHHHHHHHHHHHHhcCcc
Q 041042 235 INVNKILKFITAKLFDIPW 253 (268)
Q Consensus 235 ~~i~~~f~~l~~~i~~~~~ 253 (268)
+|+++++++|.+.+.+.+.
T Consensus 310 ~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 310 AGLPALKEALHALVRSTPP 328 (416)
T ss_dssp TTHHHHHHHHHHHHHTSCC
T ss_pred cCHHHHHHHHHHHHHhccc
Confidence 9999999999999987764
No 167
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.79 E-value=5e-19 Score=165.74 Aligned_cols=162 Identities=12% Similarity=0.098 Sum_probs=108.4
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCC----CCCCcceeeEEEEE------------EECCeEEEEEEEeCCCcccc
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQG----GSPGEGLNMMDKTL------------LVRGARISYSIWEVTGDAKA 145 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~------------~~~~~~~~l~i~Dt~G~~~~ 145 (268)
...+|+++|..++|||||+++|.+..+... ..+++|..+..... .++.....+++|||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 457999999999999999999987654332 23344543321110 00011125899999999999
Q ss_pred ccchhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccc-----------hhch
Q 041042 146 QDHLPVACKDSIAILFMFDLTS---RCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDL-----------QWTI 211 (268)
Q Consensus 146 ~~~~~~~~~~a~~vilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~-----------~~~~ 211 (268)
..++..+++.+|++|+|||+++ +++++.+.. +.. .+.|.|+|+||+|+........ ....
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v 157 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV 157 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH--cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence 9999999999999999999999 777766543 222 2456689999999743211100 0000
Q ss_pred ----HH---HHHHHHHHhC---------------CeEEEEcCCCCcCHHHHHHHHHHHHh
Q 041042 212 ----AS---QARAYAKALN---------------ATLFFSSATYNINVNKILKFITAKLF 249 (268)
Q Consensus 212 ----~~---~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~~f~~l~~~i~ 249 (268)
.+ +......+.+ ++++++||++|.|+++++++|...+.
T Consensus 158 ~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 11 1111122222 37899999999999999999988664
No 168
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.79 E-value=7.6e-19 Score=156.77 Aligned_cols=134 Identities=13% Similarity=0.187 Sum_probs=100.6
Q ss_pred CcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHh
Q 041042 115 GEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTS----------RCTLKSVIRWYQQARKC 184 (268)
Q Consensus 115 t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~----------~~s~~~~~~~~~~i~~~ 184 (268)
|+|.++ +.+.+++ +.+++|||+||++|+.++..||++++++|+|||+++ ..+|+++..|++.+...
T Consensus 204 TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 204 TSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp CCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred eeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 455544 3455554 789999999999999999999999999999999999 89999999999998775
Q ss_pred C--CCCceEEEEeCCCCCCC-C---C--------cc-------------chhchHHHHHHHH-----HH--------hCC
Q 041042 185 N--QTAIPIIIGTKFDDFIQ-L---P--------ID-------------LQWTIASQARAYA-----KA--------LNA 224 (268)
Q Consensus 185 ~--~~~~~ilvgnK~Dl~~~-~---~--------~~-------------~~~~~~~~~~~~~-----~~--------~~~ 224 (268)
. .+.|+||||||+||... + . +- ......+++..|+ +. .++
T Consensus 280 ~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~ 359 (402)
T 1azs_C 280 RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC 359 (402)
T ss_dssp TTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE
T ss_pred ccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc
Confidence 2 45566799999997310 0 0 00 0000135566553 22 246
Q ss_pred eEEEEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 225 TLFFSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 225 ~~~~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
.+++|||+++.||+++|..+.+.+....
T Consensus 360 ~~~~TSA~d~~nV~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 360 YPHFTCAVDTENIRRVFNDCRDIIQRMH 387 (402)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeecCcCHHHHHHHHHHHHHHHH
Confidence 6789999999999999999988887554
No 169
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.79 E-value=6.2e-20 Score=168.00 Aligned_cols=157 Identities=9% Similarity=0.047 Sum_probs=93.7
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhc--CCCCC-------------------------------CCCCCcceeeEEEEEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVG--DEKEQ-------------------------------GGSPGEGLNMMDKTLLV 127 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~--~~~~~-------------------------------~~~~t~~~~~~~~~~~~ 127 (268)
...++|+++|..++|||||+++|+. +.+.. ....|++..+ ..+..
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~--~~~~~ 118 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR--AYFET 118 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------C--CEEEC
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeee--EEEec
Confidence 4568999999999999999999964 22210 0111222221 22333
Q ss_pred CCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHh-CCCCc-eEEEEeCCCCCCC
Q 041042 128 RGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSR---CTLKSVIRWYQQARKC-NQTAI-PIIIGTKFDDFIQ 202 (268)
Q Consensus 128 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~---~s~~~~~~~~~~i~~~-~~~~~-~ilvgnK~Dl~~~ 202 (268)
++ ..+.||||+|+++|......+++.+|++|+|+|+++. .+|+....|.+.+... ..+.+ +|||+||+|+...
T Consensus 119 ~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~ 196 (467)
T 1r5b_A 119 EH--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSV 196 (467)
T ss_dssp SS--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTC
T ss_pred CC--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCc
Confidence 33 5689999999999998888889999999999999986 3444333333333222 12344 4799999997311
Q ss_pred -CCccchhchHHHHHHHHHHh-C------CeEEEEcCCCCcCHHHHH
Q 041042 203 -LPIDLQWTIASQARAYAKAL-N------ATLFFSSATYNINVNKIL 241 (268)
Q Consensus 203 -~~~~~~~~~~~~~~~~~~~~-~------~~~~~~Sa~~~~~i~~~f 241 (268)
...+......+++..+++.. + ++++++||++|.|+.++|
T Consensus 197 ~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 197 QWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 01122234466778888776 4 569999999999998866
No 170
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.78 E-value=2.4e-19 Score=166.00 Aligned_cols=116 Identities=11% Similarity=0.072 Sum_probs=81.0
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCC-----------------CCCCCC---CcceeeEEEEEEECCeEEEEEEEeCCC
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEK-----------------EQGGSP---GEGLNMMDKTLLVRGARISYSIWEVTG 141 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~-----------------~~~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G 141 (268)
...+|+|+|.+|+|||||+++|+...- ..++.+ ..|.+.......+....+.+++|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 457999999999999999999962100 000000 011222222223333346789999999
Q ss_pred ccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCC
Q 041042 142 DAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDF 200 (268)
Q Consensus 142 ~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~ 200 (268)
+++|......+++.+|++|+|+|+++..+.+....|. .+... +.|.|+|+||+|+.
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~~--~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRLR--HTPIMTFINKMDRD 147 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHTT--TCCEEEEEECTTSC
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHHc--CCCEEEEEeCCCCc
Confidence 9999999999999999999999999987777766654 33332 45667999999973
No 171
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.78 E-value=3.5e-21 Score=176.47 Aligned_cols=156 Identities=15% Similarity=0.192 Sum_probs=105.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFM 162 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv 162 (268)
..+|+++|..++|||||+++|.+..+.....+++..+.....+..++. .+.||||||++.|..++..++..+|++|+|
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~--~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENG--MITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSS--CCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCE--EEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 478999999999999999999876654444333333332223333443 578999999999999999999999999999
Q ss_pred EeCCC---hhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhC--CeEEEEcCCCCcCH
Q 041042 163 FDLTS---RCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALN--ATLFFSSATYNINV 237 (268)
Q Consensus 163 ~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i 237 (268)
+|+++ +++++.+ ..+.. .+.|+|+++||+|+...-++.-.... .+...+++.++ ++++++||++|.|+
T Consensus 82 Vda~~g~~~qT~e~l----~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l-~~~~~~~~~~~~~~~~v~vSAktG~gI 154 (501)
T 1zo1_I 82 VAADDGVMPQTIEAI----QHAKA--AQVPVVVAVNKIDKPEADPDRVKNEL-SQYGILPEEWGGESQFVHVSAKAGTGI 154 (501)
T ss_dssp EETTTBSCTTTHHHH----HHHHH--TTCCEEEEEECSSSSTTCCCCTTCCC-CCCCCCTTCCSSSCEEEECCTTTCTTC
T ss_pred eecccCccHHHHHHH----HHHHh--cCceEEEEEEeccccccCHHHHHHHH-HHhhhhHHHhCCCccEEEEeeeeccCc
Confidence 99988 3444332 22222 24556899999997421111000000 00011122333 78999999999999
Q ss_pred HHHHHHHHHH
Q 041042 238 NKILKFITAK 247 (268)
Q Consensus 238 ~~~f~~l~~~ 247 (268)
+++|++|...
T Consensus 155 ~eLle~I~~~ 164 (501)
T 1zo1_I 155 DELLDAILLQ 164 (501)
T ss_dssp TTHHHHTTTT
T ss_pred chhhhhhhhh
Confidence 9999998753
No 172
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.78 E-value=7.5e-19 Score=165.36 Aligned_cols=159 Identities=16% Similarity=0.104 Sum_probs=102.1
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCC-------------------C----------CcceeeEEEEEEECCeE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGS-------------------P----------GEGLNMMDKTLLVRGAR 131 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~-------------------~----------t~~~~~~~~~~~~~~~~ 131 (268)
...+||+++|.+|+|||||+++|++........ . ..|.++......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 346899999999999999999998763211110 0 01222222222233344
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChh---hHHHHHHHHHHHHHh-CCCCc-eEEEEeCCCCCCCCCcc
Q 041042 132 ISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRC---TLKSVIRWYQQARKC-NQTAI-PIIIGTKFDDFIQLPID 206 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~---s~~~~~~~~~~i~~~-~~~~~-~ilvgnK~Dl~~~~~~~ 206 (268)
..+.||||+|+++|......+++.+|++|+|+|+++.. +|.....+.+.+... ....+ +|||+||+|+... ...
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~-~~~ 323 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW-SQQ 323 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTT-CHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccch-hHH
Confidence 57899999999999998899999999999999998742 111111122221111 12334 4799999997310 011
Q ss_pred chhchHHHHHHHHHHhC-----CeEEEEcCCCCcCHHHH
Q 041042 207 LQWTIASQARAYAKALN-----ATLFFSSATYNINVNKI 240 (268)
Q Consensus 207 ~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 240 (268)
......+++..++...+ ++++++||++|.||.++
T Consensus 324 ~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 12233556666666665 58999999999999876
No 173
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.77 E-value=1.4e-18 Score=153.69 Aligned_cols=156 Identities=11% Similarity=0.113 Sum_probs=107.2
Q ss_pred CChHHHH--HHHHhcCCCCCC-------CCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 041042 93 HIGKTSF--LEKYVGDEKEQG-------GSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMF 163 (268)
Q Consensus 93 ~vGKSsL--i~~l~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~ 163 (268)
.+.|--| +.|+....+.+. ..+|+|.+. ..+.++ .+.+++|||+||+.++..+..||++++++|+||
T Consensus 157 ds~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~--~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~ 232 (362)
T 1zcb_A 157 ESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHE--YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLV 232 (362)
T ss_dssp TTHHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEE--EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEE
T ss_pred ccHHHHHHHHHHHhcCCCCCChhhhhhccCCccceEE--EEeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEE
Confidence 4455544 566665555443 445677654 345555 477999999999999999999999999999999
Q ss_pred eCCC----------hhhHHHHHHHHHHHHHh--CCCCceEEEEeCCCCCCC----------CCccchh-chHHHHHHHHH
Q 041042 164 DLTS----------RCTLKSVIRWYQQARKC--NQTAIPIIIGTKFDDFIQ----------LPIDLQW-TIASQARAYAK 220 (268)
Q Consensus 164 D~~~----------~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~Dl~~~----------~~~~~~~-~~~~~~~~~~~ 220 (268)
|+++ ..+|.+...|+..+... ..+.|+||++||+||... +++-... +..+++..++.
T Consensus 233 dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~ 312 (362)
T 1zcb_A 233 SSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLV 312 (362)
T ss_dssp ETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHH
T ss_pred ECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHH
Confidence 9999 77999999999988764 245566799999997310 0000001 34667777662
Q ss_pred -----------HhCCeEEEEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 221 -----------ALNATLFFSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 221 -----------~~~~~~~~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
..++.+++|||+++.||+++|+++.+.+.+..
T Consensus 313 ~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~ 355 (362)
T 1zcb_A 313 ECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN 355 (362)
T ss_dssp HHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999887543
No 174
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.77 E-value=1.1e-18 Score=155.06 Aligned_cols=147 Identities=10% Similarity=-0.052 Sum_probs=107.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFD 164 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D 164 (268)
+|+++|.+++|||||+++|. ....|+...+ . .+......+++|||||+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~--~--~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITM--Y--NNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEE--E--EECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeE--E--EEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999997 1112222222 2 233334468999999999998777788899999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhCCCCce-EEEEe-CCCCCCCCCccc-hhchHHHHHHHHHHhC---CeEEE--EcCCC---
Q 041042 165 LTSRCTLKSVIRWYQQARKCNQTAIP-IIIGT-KFDDFIQLPIDL-QWTIASQARAYAKALN---ATLFF--SSATY--- 233 (268)
Q Consensus 165 ~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgn-K~Dl~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~--~Sa~~--- 233 (268)
+ ...+....+|+..+... +.+. |+++| |+|+ +.. .....++++++++..+ +++++ +||++
T Consensus 93 -~-~g~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-----~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~ 163 (370)
T 2elf_A 93 -P-QGLDAHTGECIIALDLL--GFKHGIIALTRSDST-----HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNP 163 (370)
T ss_dssp -T-TCCCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-----CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSST
T ss_pred -C-CCCcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-----CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcC
Confidence 4 45556666777666554 3455 78888 9994 211 1222466777776654 78999 99999
Q ss_pred CcCHHHHHHHHHHHHhc
Q 041042 234 NINVNKILKFITAKLFD 250 (268)
Q Consensus 234 ~~~i~~~f~~l~~~i~~ 250 (268)
|.|++++++.|.+.+..
T Consensus 164 g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 164 FEGVDELKARINEVAEK 180 (370)
T ss_dssp TTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhccc
Confidence 99999999999887654
No 175
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.77 E-value=1.4e-18 Score=170.30 Aligned_cols=165 Identities=10% Similarity=0.097 Sum_probs=114.1
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcC-------CCCC-------CCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccc
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGD-------EKEQ-------GGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKA 145 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~-------~~~~-------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 145 (268)
....+||+++|..++|||||+++|.+. .+.. ....+.|.++....+.++.....+++|||+|+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 445799999999999999999999863 1110 11123444443333445555677899999999999
Q ss_pred ccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-eEEEEeCCCCCCCCCccc-hhchHHHHHHHHHHhC
Q 041042 146 QDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAI-PIIIGTKFDDFIQLPIDL-QWTIASQARAYAKALN 223 (268)
Q Consensus 146 ~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~ 223 (268)
......+++.+|++|+|+|+++....+ ..+|+..+... +.| +|||+||+|+. .+.. .....+++.++++..+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l--gIP~IIVVINKiDLv---~d~e~le~i~eEi~elLk~~G 446 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV--GVPYIIVFLNKCDMV---DDEELLELVEMEVRELLSQYD 446 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH--TCSCEEEEEECCTTC---CCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc--CCCeEEEEEeecccc---cchhhHHHHHHHHHHHHHhcc
Confidence 888888999999999999999864333 33445555443 345 36899999972 2111 1234567888888876
Q ss_pred -----CeEEEEcCCCC--------cCHHHHHHHHHHHHhc
Q 041042 224 -----ATLFFSSATYN--------INVNKILKFITAKLFD 250 (268)
Q Consensus 224 -----~~~~~~Sa~~~--------~~i~~~f~~l~~~i~~ 250 (268)
++++++||++| .|++++|+.|.+.+..
T Consensus 447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 68999999999 5799999998876653
No 176
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.77 E-value=1.1e-18 Score=159.28 Aligned_cols=153 Identities=8% Similarity=0.038 Sum_probs=104.2
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcC--CCCCC-------------------------------CCCCcceeeEEEEEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGD--EKEQG-------------------------------GSPGEGLNMMDKTLLV 127 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~--~~~~~-------------------------------~~~t~~~~~~~~~~~~ 127 (268)
...++|+++|.+++|||||+++|++. .+... ...|+...+ .. +
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~--~~--~ 80 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIAL--WK--F 80 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSC--EE--E
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEE--EE--E
Confidence 45699999999999999999999864 22110 112222222 22 3
Q ss_pred CCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChh---hHH---HHHHHHHHHHHhCCCCc-eEEEEeCCCCC
Q 041042 128 RGARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRC---TLK---SVIRWYQQARKCNQTAI-PIIIGTKFDDF 200 (268)
Q Consensus 128 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~---s~~---~~~~~~~~i~~~~~~~~-~ilvgnK~Dl~ 200 (268)
+.....+.+|||+|+++|......++..+|++|+|+|+++.. +|+ ....++..+.. .+.+ .|||+||+|+.
T Consensus 81 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSV 158 (458)
T ss_dssp ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGG
T ss_pred ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEccccc
Confidence 334467999999999999988888999999999999998753 332 22223333332 2344 46899999972
Q ss_pred CCCCccchhchHHHHHHHHHHhC-----CeEEEEcCCCCcCHHHH
Q 041042 201 IQLPIDLQWTIASQARAYAKALN-----ATLFFSSATYNINVNKI 240 (268)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 240 (268)
.. ..+......+++..+++.++ ++++++||++|.|+.++
T Consensus 159 ~~-~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 159 KW-DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cC-CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 00 11112234667788888776 68999999999999754
No 177
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.76 E-value=1.2e-19 Score=156.53 Aligned_cols=160 Identities=16% Similarity=0.129 Sum_probs=99.9
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCC------CCCCc-----------------c---eee--------------
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQG------GSPGE-----------------G---LNM-------------- 120 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~------~~~t~-----------------~---~~~-------------- 120 (268)
....||+|+|.+|||||||+++|++..+.+. ..|+. | .++
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 3457999999999999999999999887422 12220 0 000
Q ss_pred ---------EEEEEEECC-eEEEEEEEeCCCcc-------------ccccchhhhhcCCcEEE-EEEeCCChhhHHHHHH
Q 041042 121 ---------MDKTLLVRG-ARISYSIWEVTGDA-------------KAQDHLPVACKDSIAIL-FMFDLTSRCTLKSVIR 176 (268)
Q Consensus 121 ---------~~~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~a~~vi-lv~D~~~~~s~~~~~~ 176 (268)
....+.+.+ ....+.+|||||.. .+..+...|++.++++| +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 000111110 12568999999964 34566778888988777 6999987655444444
Q ss_pred HHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHH--hC-CeEEEEcCCCCcCHHHHHHHHHHH
Q 041042 177 WYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKA--LN-ATLFFSSATYNINVNKILKFITAK 247 (268)
Q Consensus 177 ~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~~f~~l~~~ 247 (268)
|+..+.. .+.+.++|+||+|+. .... ...+.++..... .+ .+++++||++|.|++++|+.+.+.
T Consensus 184 ~~~~~~~--~~~~~i~V~NK~Dl~---~~~~--~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 184 IAKEVDP--QGQRTIGVITKLDLM---DEGT--DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHCT--TCSSEEEEEECGGGS---CTTC--CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHhCC--CCCeEEEEEEccccC---CCCc--hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 5554432 244557999999973 2111 112222110001 12 367889999999999999998763
No 178
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.75 E-value=1e-17 Score=159.28 Aligned_cols=115 Identities=13% Similarity=0.101 Sum_probs=82.4
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCC----------------cceeeEEEEEEECCeEEEEEEEeCCCcccc
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPG----------------EGLNMMDKTLLVRGARISYSIWEVTGDAKA 145 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t----------------~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 145 (268)
...+|+|+|..|+|||||+++|.+.........+ .+.++......+....+.+++|||+|+++|
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 3579999999999999999999853321111111 133343444444444678999999999999
Q ss_pred ccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCC
Q 041042 146 QDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDD 199 (268)
Q Consensus 146 ~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl 199 (268)
......+++.+|++++|+|+++....+.. .++..+... +.++|+|+||+|+
T Consensus 88 ~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~~--~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 88 VGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAERL--GLPRMVVVTKLDK 138 (665)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT--TCCEEEEEECGGG
T ss_pred HHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHHc--cCCEEEEecCCch
Confidence 98899999999999999998876554433 444445442 4566899999997
No 179
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.74 E-value=5.1e-18 Score=152.58 Aligned_cols=163 Identities=13% Similarity=0.117 Sum_probs=87.8
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcCCCCCCC--------CCCcceeeEEEEEEECCeEEEEEEEeCCCccccc-----
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGDEKEQGG--------SPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQ----- 146 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~--------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----- 146 (268)
....++|+|+|++|||||||+++|++..+.... .+|++.+.....+..++....+.+||++|...+.
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 334589999999999999999999987653211 2233333222222334555689999999976531
Q ss_pred --c------------------chhhhhcCCcEEEEEEeCCCh-hhHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCCCCC
Q 041042 147 --D------------------HLPVACKDSIAILFMFDLTSR-CTLKSVI-RWYQQARKCNQTAIPIIIGTKFDDFIQLP 204 (268)
Q Consensus 147 --~------------------~~~~~~~~a~~vilv~D~~~~-~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~ 204 (268)
. +...++.++++.+++|+.... .+++.+. .|+..+. ...++|+|+||+|+ +.
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dl---l~ 181 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADT---LT 181 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTS---SC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccC---cc
Confidence 1 223456677776677766553 4565554 5776664 35556799999997 33
Q ss_pred ccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHH
Q 041042 205 IDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFITAKL 248 (268)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~i 248 (268)
........+++.+++..++++++++||+++.+++++|..+...+
T Consensus 182 ~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 182 PEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 22111224788899999999999999999999999998887654
No 180
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.74 E-value=5.5e-19 Score=165.81 Aligned_cols=153 Identities=13% Similarity=0.109 Sum_probs=82.5
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCC--C-----------------------------CCCCCCCcceeeEEEEEEECC
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDE--K-----------------------------EQGGSPGEGLNMMDKTLLVRG 129 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~--~-----------------------------~~~~~~t~~~~~~~~~~~~~~ 129 (268)
...++|+++|.+++|||||+++|++.. + .....+++..+..... +..
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~--~~~ 252 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTT--FES 252 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEE--EEe
Confidence 446899999999999999999996421 0 0011122222222222 233
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChh---hH---HHHHHHHHHHHHhCCCCc-eEEEEeCCCCCCC
Q 041042 130 ARISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRC---TL---KSVIRWYQQARKCNQTAI-PIIIGTKFDDFIQ 202 (268)
Q Consensus 130 ~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~---s~---~~~~~~~~~i~~~~~~~~-~ilvgnK~Dl~~~ 202 (268)
....+.||||+|+++|......+++.+|++|+|+|+++.. .+ ......+..+... +.+ +|||+||+|+...
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSW 330 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTT
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEeccccccc
Confidence 3467889999999999988888999999999999998532 11 0111112222221 344 5689999997210
Q ss_pred CCccchhchHHHHHHHH-HHhCC-----eEEEEcCCCCcCHH
Q 041042 203 LPIDLQWTIASQARAYA-KALNA-----TLFFSSATYNINVN 238 (268)
Q Consensus 203 ~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~ 238 (268)
..+......+++..+. +..++ +++++||++|.||.
T Consensus 331 -~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 331 -SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp -CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred -cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 0111222345566666 55565 79999999999998
No 181
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.73 E-value=5.3e-17 Score=137.73 Aligned_cols=115 Identities=15% Similarity=0.150 Sum_probs=82.9
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCC--CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhc----
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEK--EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPVACK---- 154 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~---- 154 (268)
...+||+++|.+|||||||+++|++..+ ...+.+ .........+..++. .+.+|||||++.+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~ 110 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQA-EGLRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKG 110 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC--CCCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC-cceeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHH
Confidence 3469999999999999999999999874 222222 223333344555554 6889999999988776666554
Q ss_pred -----CCcEEEEEEeCCChhhHHHH-HHHHHHHHHhCCC---CceEEEEeCCCC
Q 041042 155 -----DSIAILFMFDLTSRCTLKSV-IRWYQQARKCNQT---AIPIIIGTKFDD 199 (268)
Q Consensus 155 -----~a~~vilv~D~~~~~s~~~~-~~~~~~i~~~~~~---~~~ilvgnK~Dl 199 (268)
++|++++|+|+++.. +... ..|++.+...... .+.++|+||+|+
T Consensus 111 ~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl 163 (262)
T 3def_A 111 FLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQF 163 (262)
T ss_dssp HTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTC
T ss_pred HHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCccc
Confidence 789999999997655 4443 4677777765332 255799999997
No 182
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.71 E-value=4.2e-18 Score=152.57 Aligned_cols=85 Identities=19% Similarity=0.225 Sum_probs=48.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCC--CcceeeEEEEE-------------------EECC-eEEEEEEEeCCC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSP--GEGLNMMDKTL-------------------LVRG-ARISYSIWEVTG 141 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~--t~~~~~~~~~~-------------------~~~~-~~~~l~i~Dt~G 141 (268)
+||+++|.+|||||||+|++++........| |+..+.....+ .+++ ..+.+++|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998863322222 22212111111 1233 247799999999
Q ss_pred ccc----cccchh---hhhcCCcEEEEEEeCCCh
Q 041042 142 DAK----AQDHLP---VACKDSIAILFMFDLTSR 168 (268)
Q Consensus 142 ~~~----~~~~~~---~~~~~a~~vilv~D~~~~ 168 (268)
... +..+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 854 233433 346899999999999875
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.70 E-value=3.1e-17 Score=156.69 Aligned_cols=169 Identities=15% Similarity=0.152 Sum_probs=108.5
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCC-CCCCCcce--------eeE-------------------------------
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQ-GGSPGEGL--------NMM------------------------------- 121 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~--------~~~------------------------------- 121 (268)
..++|+|+|.+|+|||||+|+|++..+.+ ...+++.. +..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 35899999999999999999999887533 33343310 000
Q ss_pred --------------EEEEEECCeE--EEEEEEeCCCccc---cccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHH
Q 041042 122 --------------DKTLLVRGAR--ISYSIWEVTGDAK---AQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQAR 182 (268)
Q Consensus 122 --------------~~~~~~~~~~--~~l~i~Dt~G~~~---~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~ 182 (268)
...+..+... ..+.+|||||... .......+++.+|++|+|+|+++..+..+...|.+.+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 0011111100 2488999999655 34556788999999999999999888888777765553
Q ss_pred HhCCCCceEEEEeCCCCCCC--CCccc---hhchHHHHHH-----HHHH--------hCCeEEEEcCC------------
Q 041042 183 KCNQTAIPIIIGTKFDDFIQ--LPIDL---QWTIASQARA-----YAKA--------LNATLFFSSAT------------ 232 (268)
Q Consensus 183 ~~~~~~~~ilvgnK~Dl~~~--~~~~~---~~~~~~~~~~-----~~~~--------~~~~~~~~Sa~------------ 232 (268)
.. ..+.++|+||+|+... ...+. .....+.+.. +... ...++++|||+
T Consensus 228 ~~--~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~ 305 (695)
T 2j69_A 228 GR--GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQA 305 (695)
T ss_dssp TS--CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTC
T ss_pred hh--CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchh
Confidence 32 3455799999997211 00000 0000111211 1111 12468999999
Q ss_pred --CCcCHHHHHHHHHHHHhcCc
Q 041042 233 --YNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 233 --~~~~i~~~f~~l~~~i~~~~ 252 (268)
+|.|++++++.+.+.+....
T Consensus 306 ~~~~~Gi~~L~~~L~~~l~~~~ 327 (695)
T 2j69_A 306 DLDGTGFPKFMDSLNTFLTRER 327 (695)
T ss_dssp CCTTSSHHHHHHHHHHHHHHTH
T ss_pred hhhccCHHHHHHHHHHHHHHhH
Confidence 99999999999988776544
No 184
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.68 E-value=2.3e-17 Score=146.28 Aligned_cols=155 Identities=15% Similarity=0.121 Sum_probs=103.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCccee--------------------------------------------
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLN-------------------------------------------- 119 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~-------------------------------------------- 119 (268)
.+|+|+|++|||||||+++|++..|.+....++...
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 499999999999999999999987744333222100
Q ss_pred ------e--EEEEEEEC-CeEEEEEEEeCCCcccc-------------ccchhhhhcCCcEEEEEEeCCChhhHHHHHHH
Q 041042 120 ------M--MDKTLLVR-GARISYSIWEVTGDAKA-------------QDHLPVACKDSIAILFMFDLTSRCTLKSVIRW 177 (268)
Q Consensus 120 ------~--~~~~~~~~-~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~ 177 (268)
+ ....+.+. .....+.+|||||...+ ..+...|++++|++|+|+|.++.+... ..|
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~ 192 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDA 192 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHH
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHH
Confidence 0 00011110 11235889999998876 556778999999999999986644332 345
Q ss_pred HHHHHHhCCC-CceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHH
Q 041042 178 YQQARKCNQT-AIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKILKFIT 245 (268)
Q Consensus 178 ~~~i~~~~~~-~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~ 245 (268)
+..+....+. .+.|+|+||+|+. .. .....+.+..++...+.+|+++|+.++.++++.+..+.
T Consensus 193 ~~l~~~~~~~~~~~i~V~nK~Dl~---~~--~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 193 IKISREVDPSGDRTFGVLTKIDLM---DK--GTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp HHHHHHSCTTCTTEEEEEECGGGC---CT--TCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred HHHHHHhcccCCCEEEEEeCCccC---CC--cccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence 5555555544 4557999999973 22 12223444555566788999999999999987665533
No 185
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.68 E-value=2.6e-16 Score=134.02 Aligned_cols=116 Identities=15% Similarity=0.081 Sum_probs=79.2
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccchhh-------h--
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDHLPV-------A-- 152 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~-- 152 (268)
..+||+++|.+|+|||||+++|++..+... .++.+.++....+.++.....+.+|||+|++.+..+... |
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSI-SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCC-CSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 469999999999999999999998875321 112222333333333334466899999999877544332 1
Q ss_pred hcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhCCC---CceEEEEeCCCC
Q 041042 153 CKDSIAILFMFDLTSRCTLKSV-IRWYQQARKCNQT---AIPIIIGTKFDD 199 (268)
Q Consensus 153 ~~~a~~vilv~D~~~~~s~~~~-~~~~~~i~~~~~~---~~~ilvgnK~Dl 199 (268)
.+.+|++|+|||++.. ++... ..|+..+...... .+.|+|+||+|+
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl 166 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQF 166 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSC
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECccc
Confidence 3479999999998653 35433 3777777665332 356799999997
No 186
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.68 E-value=3.3e-16 Score=145.05 Aligned_cols=116 Identities=10% Similarity=0.078 Sum_probs=76.6
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCC--CC------C------------CCCCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDE--KE------Q------------GGSPGEGLNMMDKTLLVRGARISYSIWEVTG 141 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~--~~------~------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G 141 (268)
...+|+++|.+|+|||||+++|+... +. . ....+.|.++......++...+.+++|||+|
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 46899999999999999999998631 10 0 0011223332222233333446799999999
Q ss_pred ccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCC
Q 041042 142 DAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDF 200 (268)
Q Consensus 142 ~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~ 200 (268)
++.|......+++.+|++|+|+|+++...-.. ..++..+.. .+.|.++|+||+|+.
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~--~~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL--RDTPILTFMNKLDRD 147 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT--TTCCEEEEEECTTSC
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH--cCCCEEEEEcCcCCc
Confidence 99999888889999999999999987643222 222232222 244557999999975
No 187
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.67 E-value=2.3e-19 Score=148.46 Aligned_cols=154 Identities=15% Similarity=0.123 Sum_probs=93.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeE------------EEEEEEC-CeEEEEEEEeCCCccccccch
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMM------------DKTLLVR-GARISYSIWEVTGDAKAQDHL 149 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~------------~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~ 149 (268)
.+||+++|.+|||||||+++|+...+...+.++++.++. .+.+.++ +..+.+..||+ ++.+..+.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~l~ 115 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLV--GHALEDLN 115 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHH--HHHHTTSC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHH--HHHHHHHh
Confidence 489999999999999999999987665555666666554 2334443 32233334444 23333222
Q ss_pred ----hhhhc--------------CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhch
Q 041042 150 ----PVACK--------------DSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTI 211 (268)
Q Consensus 150 ----~~~~~--------------~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~ 211 (268)
..++. ..+.++.+.|..+...... .....+ ..+.+||+||+|+. . .....
T Consensus 116 ~~~~d~~~id~~g~i~~~~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~-----~~~~iiv~NK~Dl~----~-~~~~~ 183 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICPADFDLGTHKRIVVISTTEGDDTIE--KHPGIM-----KTADLIVINKIDLA----D-AVGAD 183 (226)
T ss_dssp GGGCSEEEEECCSCSSGGGGCCCSCSEEEEEEEGGGCTTTTT--TCHHHH-----TTCSEEEEECGGGH----H-HHTCC
T ss_pred cCCCCEEEEeCCCCccCcchhhhccCcEEEEEecCcchhhHh--hhhhHh-----hcCCEEEEeccccC----c-hhHHH
Confidence 11111 2234456666432111000 001111 23558999999961 1 11134
Q ss_pred HHHHHHHHHHh--CCeEEEEcCCCCcCHHHHHHHHHHHHhc
Q 041042 212 ASQARAYAKAL--NATLFFSSATYNINVNKILKFITAKLFD 250 (268)
Q Consensus 212 ~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~f~~l~~~i~~ 250 (268)
.+++.++++.+ +++++++||++|.|++++|+.+.+.+..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 184 IKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 56666777665 6799999999999999999999887654
No 188
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.67 E-value=2.1e-16 Score=150.90 Aligned_cols=114 Identities=16% Similarity=0.108 Sum_probs=82.2
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhcC--CC------CC------------CCCCCcceeeEEEEEEECCeEEEEEEEeC
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVGD--EK------EQ------------GGSPGEGLNMMDKTLLVRGARISYSIWEV 139 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~~--~~------~~------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt 139 (268)
.....+|+|+|..|+|||||+++|+.. .+ .. ....|++.. ...+..+ .+.+++|||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~--~~~~~~~--~~~i~liDT 84 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFWK--DHRINIIDT 84 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC--EEEEEET--TEEEEEECC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc--eEEEEEC--CeEEEEEEC
Confidence 345689999999999999999999842 11 00 111222222 1223333 467899999
Q ss_pred CCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCC
Q 041042 140 TGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDF 200 (268)
Q Consensus 140 ~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~ 200 (268)
+|+..|......+++.+|++|+|+|+++..+++....|.. +... +.|+++|+||+|+.
T Consensus 85 PG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~--~~p~ivviNKiD~~ 142 (691)
T 1dar_A 85 PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY--KVPRIAFANKMDKT 142 (691)
T ss_dssp CSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT--TCCEEEEEECTTST
T ss_pred cCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc--CCCEEEEEECCCcc
Confidence 9999999999999999999999999999888887777764 3332 45668999999975
No 189
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.66 E-value=1.8e-15 Score=144.59 Aligned_cols=117 Identities=15% Similarity=0.110 Sum_probs=81.5
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcC--CCCC-----------CCCC---CcceeeEE--EEEEEC-----CeEEEEEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGD--EKEQ-----------GGSP---GEGLNMMD--KTLLVR-----GARISYSIW 137 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~--~~~~-----------~~~~---t~~~~~~~--~~~~~~-----~~~~~l~i~ 137 (268)
....+|+|+|..|+|||||+++|+.. .+.. ++.+ ..|.+... ..+.++ +..+.++||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 34589999999999999999999743 1111 0000 11112211 122222 344889999
Q ss_pred eCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCC
Q 041042 138 EVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDF 200 (268)
Q Consensus 138 Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~ 200 (268)
||+|+.+|......+++.+|++|+|+|+++....+....|.. +.. .+.|+++|+||+|+.
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~--~~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK--YKVPRIAFVNKMDRM 147 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH--cCCCEEEEEeCCCcc
Confidence 999999999999999999999999999998777666555543 322 245668999999974
No 190
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.64 E-value=8.3e-16 Score=146.76 Aligned_cols=113 Identities=14% Similarity=0.100 Sum_probs=81.6
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhc--CCCCC-----------CC-------CCCcceeeEEEEEEECCeEEEEEEEeCC
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVG--DEKEQ-----------GG-------SPGEGLNMMDKTLLVRGARISYSIWEVT 140 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~--~~~~~-----------~~-------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~ 140 (268)
....+|+|+|.+|+|||||+++|+. +.+.. ++ ..|+. .....+..+ .+.+++|||+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~--~~~~~~~~~--~~~i~liDTP 83 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITIT--SAATTAAWE--GHRVNIIDTP 83 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------C--CSEEEEEET--TEEEEEECCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEe--eeeEEEEEC--CeeEEEEECc
Confidence 3468999999999999999999984 22210 00 11111 111223334 3668999999
Q ss_pred CccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCC
Q 041042 141 GDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDF 200 (268)
Q Consensus 141 G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~ 200 (268)
|+.+|......+++.+|++|+|+|+++..+++....|.. +... +.|+|+|+||+|+.
T Consensus 84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~--~~p~ilviNK~Dl~ 140 (693)
T 2xex_A 84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY--GVPRIVFVNKMDKL 140 (693)
T ss_dssp CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT--TCCEEEEEECTTST
T ss_pred CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc--CCCEEEEEECCCcc
Confidence 999999889999999999999999999888877766654 4332 45668999999974
No 191
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.64 E-value=6e-16 Score=134.28 Aligned_cols=115 Identities=11% Similarity=0.043 Sum_probs=69.8
Q ss_pred EEEEEEeCCCccc-------------cccchhhhhcCCcEEEEEEeCCChhhH-HHHHHHHHHHHHhCCCCceEEEEeCC
Q 041042 132 ISYSIWEVTGDAK-------------AQDHLPVACKDSIAILFMFDLTSRCTL-KSVIRWYQQARKCNQTAIPIIIGTKF 197 (268)
Q Consensus 132 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~a~~vilv~D~~~~~s~-~~~~~~~~~i~~~~~~~~~ilvgnK~ 197 (268)
..+.+|||+|... +......+++.+|++++|+|.++..-. .....+...+.. .+.+.|+|+||+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~ 208 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL 208 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCc
Confidence 4588999999753 445667789999999999997543211 111122222221 244557999999
Q ss_pred CCCCCCCccchhchHHHHHHHHHHhCCeEEEEcCCC------CcCHHHHHHHHHHHHhcCcc
Q 041042 198 DDFIQLPIDLQWTIASQARAYAKALNATLFFSSATY------NINVNKILKFITAKLFDIPW 253 (268)
Q Consensus 198 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~~i~~~f~~l~~~i~~~~~ 253 (268)
|+. .... ...+.+.......+..++++|+.+ +.|+.++++.+.+.+...++
T Consensus 209 Dl~---~~~~--~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~ 265 (315)
T 1jwy_B 209 DLM---DKGT--DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPI 265 (315)
T ss_dssp TSS---CSSC--CCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTT
T ss_pred ccC---Ccch--HHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCc
Confidence 973 2211 112222211112235677766654 78899999999888877654
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.64 E-value=4e-16 Score=128.38 Aligned_cols=154 Identities=12% Similarity=0.036 Sum_probs=93.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeE------------EEEEEECC------------------eEE
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMM------------DKTLLVRG------------------ARI 132 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~------------~~~~~~~~------------------~~~ 132 (268)
..+|+++|.+|||||||+++|...........++..++. ...+.++. ...
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 469999999999999999999865221111111111110 01111211 234
Q ss_pred EEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchH
Q 041042 133 SYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIA 212 (268)
Q Consensus 133 ~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~ 212 (268)
.+.+|||+|+-... ..+...++.+++|+|+++.... ...+.... ..+.++|+||+|+. . ......
T Consensus 110 d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~~-----~~~~iiv~NK~Dl~----~-~~~~~~ 174 (221)
T 2wsm_A 110 DLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEIF-----RVADLIVINKVALA----E-AVGADV 174 (221)
T ss_dssp SEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHHH-----HTCSEEEEECGGGH----H-HHTCCH
T ss_pred CEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhhh-----hcCCEEEEecccCC----c-chhhHH
Confidence 67899999951110 1122367899999998765421 11222221 34568999999961 1 111234
Q ss_pred HHHHHHHHHh--CCeEEEEcCCCCcCHHHHHHHHHHHHhcC
Q 041042 213 SQARAYAKAL--NATLFFSSATYNINVNKILKFITAKLFDI 251 (268)
Q Consensus 213 ~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~f~~l~~~i~~~ 251 (268)
+++.++++.. +++++++||++|.|++++|++|.+.+...
T Consensus 175 ~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 175 EKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 5555555554 47899999999999999999999887654
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.62 E-value=3.1e-17 Score=145.05 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=91.1
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCCCCC------CCCc---------------------------------------
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKEQGG------SPGE--------------------------------------- 116 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~------~~t~--------------------------------------- 116 (268)
...+|+|+|.+|||||||+++|++..+.+.. .|+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3479999999999999999999998874322 1220
Q ss_pred ----ceeeEEEEEEECC-eEEEEEEEeCCCcc-------------ccccchhhhhcCCcEEEEEE-eCCChhhHHHHHHH
Q 041042 117 ----GLNMMDKTLLVRG-ARISYSIWEVTGDA-------------KAQDHLPVACKDSIAILFMF-DLTSRCTLKSVIRW 177 (268)
Q Consensus 117 ----~~~~~~~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~a~~vilv~-D~~~~~s~~~~~~~ 177 (268)
|.......+.+.+ ....+.+|||||.. .+..+...|++.++.+|+++ |.+....-. .|
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~---~~ 186 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS---DA 186 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGC---HH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchh---HH
Confidence 0000001111111 12468999999953 34556777887777666554 554322211 22
Q ss_pred HHHHHHhCC-CCceEEEEeCCCCCCCCCccchhchHHHHHH--HHHHhC-CeEEEEcCCCCcCHHHHHHHHHH
Q 041042 178 YQQARKCNQ-TAIPIIIGTKFDDFIQLPIDLQWTIASQARA--YAKALN-ATLFFSSATYNINVNKILKFITA 246 (268)
Q Consensus 178 ~~~i~~~~~-~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~~i~~~f~~l~~ 246 (268)
...++...+ +.+.|+|+||+|+. ..... ..+..+. +....+ .+++++||++|.|++++|+.+.+
T Consensus 187 ~~i~~~~~~~~~~~i~V~NK~Dl~---~~~~~--~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 187 LKVAKEVDPQGQRTIGVITKLDLM---DEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHCTTCTTEEEEEECGGGS---CTTCC--CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHhCcCCCceEEEecccccc---Ccchh--HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 223333333 34557999999973 21110 1111110 111123 24677999999999999999876
No 194
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.61 E-value=1e-14 Score=128.51 Aligned_cols=144 Identities=13% Similarity=0.083 Sum_probs=93.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCC--CcceeeEEEEEEECCeE---------------EEEEEEeCCCcccc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSP--GEGLNMMDKTLLVRGAR---------------ISYSIWEVTGDAKA 145 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~ 145 (268)
.+||+++|.+|||||||+|++.+..+.....| |++.+. ..+.+++.. ..+++|||+|+.++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~--g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT--GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS--SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE--EEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 37999999999999999999998775333333 443332 234445432 57899999998875
Q ss_pred c----cchhh---hhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHH--------------------------
Q 041042 146 Q----DHLPV---ACKDSIAILFMFDLTSR----------CTLKSVIRWYQQAR-------------------------- 182 (268)
Q Consensus 146 ~----~~~~~---~~~~a~~vilv~D~~~~----------~s~~~~~~~~~~i~-------------------------- 182 (268)
. .+... +++++|++++|+|+++. +.++++..+..++.
T Consensus 80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~ 159 (363)
T 1jal_A 80 ASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAK 159 (363)
T ss_dssp HHHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred ccccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHH
Confidence 3 34333 47999999999999862 34444433222221
Q ss_pred --------------H-------------------h--CCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEE
Q 041042 183 --------------K-------------------C--NQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLF 227 (268)
Q Consensus 183 --------------~-------------------~--~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (268)
. + ....|.++|+||.|.. + ......+.++.++...+++++
T Consensus 160 ~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~--~---~~n~~~~~v~~~~~~~~~~~i 234 (363)
T 1jal_A 160 FELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDG--F---ENNPYLDRVREIAAKEGAVVV 234 (363)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTC--S---SSCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEeccccc--c---cccHHHHHHHHHHHHcCCCEE
Confidence 0 0 0124557999999952 1 112346778889999999999
Q ss_pred EEcCCC
Q 041042 228 FSSATY 233 (268)
Q Consensus 228 ~~Sa~~ 233 (268)
.+||+.
T Consensus 235 ~~sA~~ 240 (363)
T 1jal_A 235 PVCAAI 240 (363)
T ss_dssp EECHHH
T ss_pred EechHH
Confidence 999764
No 195
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.59 E-value=4.1e-15 Score=144.73 Aligned_cols=116 Identities=11% Similarity=0.121 Sum_probs=86.0
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCC------------CCC------CCCCCcceeeEEEEEE------------ECCe
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDE------------KEQ------GGSPGEGLNMMDKTLL------------VRGA 130 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~------------~~~------~~~~t~~~~~~~~~~~------------~~~~ 130 (268)
....||+|+|..++|||||+++|+... +.. ....|++.......+. .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 346899999999999999999998641 110 0111333322222222 2445
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCC
Q 041042 131 RISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDD 199 (268)
Q Consensus 131 ~~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl 199 (268)
.+.+++|||+|+.+|...+..+++.+|++|+|||+++..+++....|..... .+.|+|+|+||+|+
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~~~p~ilviNK~D~ 162 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG---ERIKPVVVINKVDR 162 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---TTCEEEEEEECHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH---cCCCeEEEEECCCc
Confidence 7889999999999999999999999999999999999988888777765442 24566899999996
No 196
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.55 E-value=8.1e-15 Score=129.60 Aligned_cols=106 Identities=9% Similarity=0.010 Sum_probs=68.4
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhch
Q 041042 132 ISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTI 211 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~ 211 (268)
+.+.||||+|... .....+..+|++|+|+|.+..+.++.+..++ ...+.++|+||+|+ .........
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~-------~~~p~ivVlNK~Dl---~~~~~~~~~ 238 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKGV-------LELADIVVVNKADG---EHHKEARLA 238 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTTS-------GGGCSEEEEECCCG---GGHHHHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHhH-------hhcCCEEEEECCCC---cChhHHHHH
Confidence 5688999999432 2233458999999999987765553332211 12355899999996 111011111
Q ss_pred HHHHHHHHHHh-------CCeEEEEcCCCCcCHHHHHHHHHHHHhc
Q 041042 212 ASQARAYAKAL-------NATLFFSSATYNINVNKILKFITAKLFD 250 (268)
Q Consensus 212 ~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~f~~l~~~i~~ 250 (268)
.++........ +.+++++||++|.|+++++++|.+.+..
T Consensus 239 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 239 ARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 22222222222 5789999999999999999999887754
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.54 E-value=2e-14 Score=127.14 Aligned_cols=156 Identities=12% Similarity=0.075 Sum_probs=95.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCC--CcceeeEEEEEEECC-------------------eEEEEEEEeCCCc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSP--GEGLNMMDKTLLVRG-------------------ARISYSIWEVTGD 142 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~-------------------~~~~l~i~Dt~G~ 142 (268)
++|+++|.+|||||||++++.+........+ |+..+.. ...+++ ....+++|||||.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g--~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG--VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE--EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee--eEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 5899999999999999999987642222211 2222221 122222 2356899999998
Q ss_pred cccc----cchhh---hhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHH------------------------
Q 041042 143 AKAQ----DHLPV---ACKDSIAILFMFDLTSR----------CTLKSVIRWYQQA------------------------ 181 (268)
Q Consensus 143 ~~~~----~~~~~---~~~~a~~vilv~D~~~~----------~s~~~~~~~~~~i------------------------ 181 (268)
..+. .+... +++.+|++++|+|+++. +.+.++..+..++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~ 159 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRE 159 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchh
Confidence 7653 23333 47899999999999862 2233222111111
Q ss_pred -----------H----Hh---------------------CCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCe
Q 041042 182 -----------R----KC---------------------NQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNAT 225 (268)
Q Consensus 182 -----------~----~~---------------------~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (268)
. .. -...|.++++||.|.. +.+.......+.++.+++..+++
T Consensus 160 ~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d--~~~~~~n~~~~~v~~~a~~~g~~ 237 (368)
T 2dby_A 160 RLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEED--LPDGRGNPQVEAVRRKALEEGAE 237 (368)
T ss_dssp GHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGG--TTTCTTCHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHh--hcccchhhHHHHHHHHHHHcCCe
Confidence 0 00 0013557999999831 11111133477788899999999
Q ss_pred EEEEcCCCCcCHHHHHHH
Q 041042 226 LFFSSATYNINVNKILKF 243 (268)
Q Consensus 226 ~~~~Sa~~~~~i~~~f~~ 243 (268)
++++||+++.++.++++.
T Consensus 238 vv~iSAk~E~el~eL~~~ 255 (368)
T 2dby_A 238 VVVVSARLEAELAELSGE 255 (368)
T ss_dssp EEEECHHHHHHHHTSCHH
T ss_pred EEEeechhHHHHHHhchH
Confidence 999999987666655544
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.49 E-value=3.9e-14 Score=131.80 Aligned_cols=113 Identities=19% Similarity=0.137 Sum_probs=79.2
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCCC---CCCCCCcceeeEEEEEEEC-------Ce---------------------
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEKE---QGGSPGEGLNMMDKTLLVR-------GA--------------------- 130 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~~-------~~--------------------- 130 (268)
...+|+|+|.+|+|||||+|+|++..+. ....+++.. + ..+..+ +.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~--~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-F--VAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-E--EEEECCSSSEEECCC------------------CCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-E--EEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 3589999999999999999999998863 333333211 0 000000 00
Q ss_pred ---E---------EEEEEEeCCCccc-----------cccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC
Q 041042 131 ---R---------ISYSIWEVTGDAK-----------AQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQT 187 (268)
Q Consensus 131 ---~---------~~l~i~Dt~G~~~-----------~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~ 187 (268)
. ..+.+|||+|... |..+...++..+|++|+|+|+++....+....|++.+... .
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~ 218 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--E 218 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--G
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--C
Confidence 0 2588999999865 4456677889999999999998865566666777666432 3
Q ss_pred CceEEEEeCCCC
Q 041042 188 AIPIIIGTKFDD 199 (268)
Q Consensus 188 ~~~ilvgnK~Dl 199 (268)
.+.++|+||+|+
T Consensus 219 ~pvilVlNK~Dl 230 (550)
T 2qpt_A 219 DKIRVVLNKADM 230 (550)
T ss_dssp GGEEEEEECGGG
T ss_pred CCEEEEEECCCc
Confidence 456799999997
No 199
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.46 E-value=3.6e-14 Score=125.12 Aligned_cols=102 Identities=10% Similarity=0.010 Sum_probs=60.2
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhch
Q 041042 132 ISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTI 211 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~ 211 (268)
+.+.++||+|.... .......+|++++|+|+++....+.+.. .+ -..+.++|.||+|+ .+ ....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~~~~ivVlNK~Dl---~~---~~~~ 230 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IEMADLVAVTKSDG---DL---IVPA 230 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSG---GG---HHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----HhcCCEEEEeeecC---CC---chhH
Confidence 35789999995321 2344678999999999987543332221 11 13355899999996 11 1111
Q ss_pred HHHHHHHHH----------HhCCeEEEEcCCCCcCHHHHHHHHHHHHh
Q 041042 212 ASQARAYAK----------ALNATLFFSSATYNINVNKILKFITAKLF 249 (268)
Q Consensus 212 ~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~f~~l~~~i~ 249 (268)
......+.. .++.+++.+||++|.|+++++++|.+.+.
T Consensus 231 ~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 231 RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 112222221 12467899999999999999999987653
No 200
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.45 E-value=3.9e-13 Score=116.17 Aligned_cols=97 Identities=8% Similarity=0.015 Sum_probs=80.4
Q ss_pred ccccccchhhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhch-HHHHHHHH
Q 041042 142 DAKAQDHLPVACKDSIAILFMFDLTSRC-TLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTI-ASQARAYA 219 (268)
Q Consensus 142 ~~~~~~~~~~~~~~a~~vilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~-~~~~~~~~ 219 (268)
++++..+.+.+++++|++++|||++++. +++.+.+|+..+.. .+.++|||+||+|| .++ ..+. .++..+++
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL---~~~--~~v~~~~~~~~~~ 138 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDL---LNE--EEKKELERWISIY 138 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGG---CCH--HHHHHHHHHHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccC---CCc--cccHHHHHHHHHH
Confidence 7888899999999999999999999987 89999999987765 45677899999997 222 1112 45667777
Q ss_pred HHhCCeEEEEcCCCCcCHHHHHHHHH
Q 041042 220 KALNATLFFSSATYNINVNKILKFIT 245 (268)
Q Consensus 220 ~~~~~~~~~~Sa~~~~~i~~~f~~l~ 245 (268)
+..+++++++||++|.|++++|+.+.
T Consensus 139 ~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 139 RDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred HHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 88899999999999999999998764
No 201
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.40 E-value=2.8e-12 Score=108.07 Aligned_cols=114 Identities=9% Similarity=-0.028 Sum_probs=66.8
Q ss_pred EEEEEEeCCCccccccchh------hhhcCCcEEEEEEeCCChhh---HHHHHHHHHHHHHhCCCCceEEEEeCCCCCCC
Q 041042 132 ISYSIWEVTGDAKAQDHLP------VACKDSIAILFMFDLTSRCT---LKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQ 202 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~~~~------~~~~~a~~vilv~D~~~~~s---~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~ 202 (268)
+.+.+|||+|+..+..... ..+.. +++++++|.+...+ +.....+..... ...+.|.++|+||+|+.
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~iv~NK~D~~-- 184 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPALNKVDLL-- 184 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEECCGGGC--
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh-cccCCCeEEEEeccccc--
Confidence 4689999999877543322 23456 88888888754333 322222111111 11244567999999962
Q ss_pred CCccchhchHH---HHH----H-----------------HHHHhC--CeEEEEcCCCCcCHHHHHHHHHHHHhc
Q 041042 203 LPIDLQWTIAS---QAR----A-----------------YAKALN--ATLFFSSATYNINVNKILKFITAKLFD 250 (268)
Q Consensus 203 ~~~~~~~~~~~---~~~----~-----------------~~~~~~--~~~~~~Sa~~~~~i~~~f~~l~~~i~~ 250 (268)
.........+ +.. . +++.++ ++++++||++|.|+++++++|.+.+..
T Consensus 185 -~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 185 -SEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp -CHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred -ccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 2111000111 101 1 124443 489999999999999999999887643
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.38 E-value=4.4e-13 Score=117.79 Aligned_cols=105 Identities=11% Similarity=-0.011 Sum_probs=63.3
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhch
Q 041042 132 ISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTI 211 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~ 211 (268)
+.+.+|||+|...+.. ...+.+|++++|+|.++.+.++.+.... . +.+.++|+||+|+. ........
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~~--~-----~~p~ivv~NK~Dl~---~~~~~~~~ 215 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKGL--M-----EVADLIVINKDDGD---NHTNVAIA 215 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHHH--H-----HHCSEEEECCCCTT---CHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHhh--h-----cccCEEEEECCCCC---ChHHHHHH
Confidence 4688999999654332 2468999999999997654332221111 1 22458999999962 11011111
Q ss_pred HHHHHHHHHHh-------CCeEEEEcCCCCcCHHHHHHHHHHHHh
Q 041042 212 ASQARAYAKAL-------NATLFFSSATYNINVNKILKFITAKLF 249 (268)
Q Consensus 212 ~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~f~~l~~~i~ 249 (268)
.++.+...... ..+++.+||++|.|++++++.|.+.+.
T Consensus 216 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 216 RHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 12233322222 357899999999999999999988664
No 203
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.36 E-value=5.1e-12 Score=117.47 Aligned_cols=116 Identities=9% Similarity=0.024 Sum_probs=78.1
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCC-----------------CCCCCCC---CcceeeEEEEEEECCeEEEEEEEeCCC
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDE-----------------KEQGGSP---GEGLNMMDKTLLVRGARISYSIWEVTG 141 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~-----------------~~~~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G 141 (268)
+.-+|+|+|..++|||||..+++... -..++.+ .-|.+..+..+.+..+.++++|+||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 35689999999999999999985210 0011111 112222222223333446789999999
Q ss_pred ccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCC
Q 041042 142 DAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDF 200 (268)
Q Consensus 142 ~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~ 200 (268)
+.+|.......++-+|++|+|+|+.+.-.-+....|.... ++ +.|+|++.||+|..
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~-~~--~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCR-MR--ATPVMTFVNKMDRE 165 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHH-HT--TCCEEEEEECTTSC
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHH-Hh--CCceEEEEecccch
Confidence 9999999999999999999999998765555555664433 32 55678999999963
No 204
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.27 E-value=3.5e-12 Score=113.41 Aligned_cols=89 Identities=13% Similarity=0.187 Sum_probs=52.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCe---------------EEEEEEEeCCCcccccc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGA---------------RISYSIWEVTGDAKAQD 147 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~ 147 (268)
.++|+++|.+|||||||+|++.+..+.....|+.+.+.....+.+++. ...+++|||+|...+..
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as 101 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH 101 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence 479999999999999999999998765555554444444455555543 23589999999887543
Q ss_pred -------chhhhhcCCcEEEEEEeCCChhhH
Q 041042 148 -------HLPVACKDSIAILFMFDLTSRCTL 171 (268)
Q Consensus 148 -------~~~~~~~~a~~vilv~D~~~~~s~ 171 (268)
....+++++|++++|+|+++.+++
T Consensus 102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 102 NGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp -----CCHHHHHHHTSSSEEEEEEC------
T ss_pred hhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 345678999999999999875543
No 205
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.26 E-value=5.1e-11 Score=105.43 Aligned_cols=113 Identities=14% Similarity=0.202 Sum_probs=77.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcccc----ccchhh---hhcC
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKA----QDHLPV---ACKD 155 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----~~~~~~---~~~~ 155 (268)
..+|.++|.||||||||+|++++........|....+.....+.+++.. +++.||||.-.. ..+... .++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~--i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK--IQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE--EEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE--EEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 3799999999999999999999876444444434445555667777755 789999996432 112222 3578
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhC---CCCceEEEEeCCCC
Q 041042 156 SIAILFMFDLTSRCTLKSVIRWYQQARKCN---QTAIPIIIGTKFDD 199 (268)
Q Consensus 156 a~~vilv~D~~~~~s~~~~~~~~~~i~~~~---~~~~~ilvgnK~Dl 199 (268)
||++++|+|++++.. .......++.... ...|++++.||.|.
T Consensus 150 ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 150 CNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp CSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred cCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 999999999998643 2222333444332 35567899999995
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.24 E-value=5.2e-12 Score=120.53 Aligned_cols=158 Identities=19% Similarity=0.153 Sum_probs=92.0
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCC-CCCcc------------------------------------------
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGG-SPGEG------------------------------------------ 117 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~-~~t~~------------------------------------------ 117 (268)
....+|+|+|.+++|||||+|++++..+.+.. ..++.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 44569999999999999999999998762211 11100
Q ss_pred ------eeeEEEEEEECC-eEEEEEEEeCCCccc-------------cccchhhhh-cCCcEEEEEEeCCChhhHHHHHH
Q 041042 118 ------LNMMDKTLLVRG-ARISYSIWEVTGDAK-------------AQDHLPVAC-KDSIAILFMFDLTSRCTLKSVIR 176 (268)
Q Consensus 118 ------~~~~~~~~~~~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~-~~a~~vilv~D~~~~~s~~~~~~ 176 (268)
.......+.+.+ ....+.++||||-.. ...+...|+ ..+|++++|+|+++..+-.+...
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 000001111100 012377999999433 223444455 57899999999986533333223
Q ss_pred HHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHH----hC-CeEEEEcCCCCcCHHHHHHHHHHH
Q 041042 177 WYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKA----LN-ATLFFSSATYNINVNKILKFITAK 247 (268)
Q Consensus 177 ~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~Sa~~~~~i~~~f~~l~~~ 247 (268)
++..+.. .+.|.|+|.||+|+. ..... .. .... .+. .+ .+++.+||++|.|++++++.+.+.
T Consensus 209 ll~~L~~--~g~pvIlVlNKiDlv---~~~~~--~~-~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 209 IAKEVDP--QGQRTIGVITKLDLM---DEGTD--AR-DVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHCT--TCSSEEEEEECTTSS---CTTCC--SH-HHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHh--cCCCEEEEEeCcccC---Ccchh--hH-HHHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 3333322 234568999999973 22211 11 1111 001 12 245669999999999999998873
No 207
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.20 E-value=6.4e-12 Score=118.96 Aligned_cols=113 Identities=12% Similarity=0.130 Sum_probs=77.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcC--CC------CC-----CCCC---CcceeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD--EK------EQ-----GGSP---GEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDH 148 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~--~~------~~-----~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 148 (268)
+|+|+|..++|||||..+++.. .+ .. ++.+ .-|.+..+..+.+..+...++++||||+.+|...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E 83 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE 83 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence 6899999999999999998631 11 00 0110 0023333333333444567899999999999999
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCC
Q 041042 149 LPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDF 200 (268)
Q Consensus 149 ~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~ 200 (268)
....++-+|++|+|+|+.+.-.-+....|....+. +.|+|++.||+|..
T Consensus 84 v~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~---~lp~i~~INKmDr~ 132 (638)
T 3j25_A 84 VYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM---GIPTIFFINKIDQN 132 (638)
T ss_dssp HHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH---TCSCEECCEECCSS
T ss_pred HHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc---CCCeEEEEeccccc
Confidence 99999999999999999875443443444443332 45678999999953
No 208
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.19 E-value=6.6e-12 Score=101.37 Aligned_cols=106 Identities=5% Similarity=-0.044 Sum_probs=65.0
Q ss_pred CCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHH---hC---CCCceEEEEeCC-CCCCCCCccchhch
Q 041042 139 VTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARK---CN---QTAIPIIIGTKF-DDFIQLPIDLQWTI 211 (268)
Q Consensus 139 t~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~---~~---~~~~~ilvgnK~-Dl~~~~~~~~~~~~ 211 (268)
.+||+.++.+|+.||.++|++|+|+|.+|.+.++ .+.-+.++.. .. .+.|.+|.+||. |+...++.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~------ 181 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPC------ 181 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCH------
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCH------
Confidence 4589999999999999999999999999986554 3333333322 11 234556888995 76332222
Q ss_pred HHHHHHHHH----HhCCeEEEEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 212 ASQARAYAK----ALNATLFFSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 212 ~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
.++.+... ...+.+..|||++|+|+.+.++||++.+..+.
T Consensus 182 -~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 182 -FYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp -HHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred -HHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 22211111 13455777999999999999999998776553
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.18 E-value=2.6e-10 Score=99.86 Aligned_cols=103 Identities=13% Similarity=0.061 Sum_probs=61.6
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhch
Q 041042 132 ISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTI 211 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~ 211 (268)
..+.++||+|...-. ......+|.+++|+|.+..+..+.+..++.+ .+.++|.||+|+ .+. ....
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~-------~~~ivvlNK~Dl---~~~--~~~s 212 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIFE-------LADMIAVNKADD---GDG--ERRA 212 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHHH-------HCSEEEEECCST---TCC--HHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHHhc-------cccEEEEEchhc---cCc--hhHH
Confidence 458899999964321 2235789999999998654432222221111 133677799996 221 1112
Q ss_pred HHHHHHHHHH----------hCCeEEEEcCCCCcCHHHHHHHHHHHHh
Q 041042 212 ASQARAYAKA----------LNATLFFSSATYNINVNKILKFITAKLF 249 (268)
Q Consensus 212 ~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~f~~l~~~i~ 249 (268)
....+.+... +..+++.+||+++.|++++++.|.+...
T Consensus 213 ~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 213 SAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2223333321 1457889999999999999999987653
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.16 E-value=4.2e-10 Score=100.13 Aligned_cols=85 Identities=15% Similarity=0.244 Sum_probs=61.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCC-CCCCCCCcceeeEEEEEEECCeE---------------EEEEEEeCCCcccc-
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEK-EQGGSPGEGLNMMDKTLLVRGAR---------------ISYSIWEVTGDAKA- 145 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~- 145 (268)
..+|.++|.+|||||||+|.+++... .....|.+..+.....+.+++.. ..+.+||++|....
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 47999999999999999999999775 55555544445555566666521 35889999995432
Q ss_pred ------ccchhhhhcCCcEEEEEEeCCC
Q 041042 146 ------QDHLPVACKDSIAILFMFDLTS 167 (268)
Q Consensus 146 ------~~~~~~~~~~a~~vilv~D~~~ 167 (268)
.......++.+|+++.|+|+.+
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2223345689999999999864
No 211
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.16 E-value=6.6e-10 Score=106.45 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=77.7
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcC--------CCCC-----CCC---CCcceeeEEE--EEEEC-----CeEEEEEEEe
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGD--------EKEQ-----GGS---PGEGLNMMDK--TLLVR-----GARISYSIWE 138 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~--------~~~~-----~~~---~t~~~~~~~~--~~~~~-----~~~~~l~i~D 138 (268)
+.-+|+|+|...+|||||..+|+.. .... ++. ..-|.+..+. .+.+. ...+.++++|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 3457999999999999999998621 1110 000 0112222222 22232 2368899999
Q ss_pred CCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCC
Q 041042 139 VTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDD 199 (268)
Q Consensus 139 t~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl 199 (268)
|||+-+|.......++-+|++|+|+|+...-.-+...-|.+..+. +.|+|++.||+|.
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~---~lp~i~~iNKiDr 149 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY---GVPRIVYVNKMDR 149 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH---TCCEEEEEECSSS
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc---CCCeEEEEccccc
Confidence 999999999999999999999999999876555554555554443 5677999999996
No 212
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.08 E-value=2.5e-10 Score=101.18 Aligned_cols=100 Identities=17% Similarity=0.165 Sum_probs=77.4
Q ss_pred CccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccc-hhchHHHHHHHH
Q 041042 141 GDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDL-QWTIASQARAYA 219 (268)
Q Consensus 141 G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~-~~~~~~~~~~~~ 219 (268)
.+++|..+...+++.++++++|+|++|.. ..|...+.++..+.|+++|+||+|| ++... .....+.+..++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL---~~~~~~~~~~~~~l~~~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADL---IPKSVKHDKVKHWMRYSA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGG---SCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhc---CCcccCHHHHHHHHHHHH
Confidence 46889999999999999999999999853 5677777777667777899999997 33221 112234445557
Q ss_pred HHhCC---eEEEEcCCCCcCHHHHHHHHHHHH
Q 041042 220 KALNA---TLFFSSATYNINVNKILKFITAKL 248 (268)
Q Consensus 220 ~~~~~---~~~~~Sa~~~~~i~~~f~~l~~~i 248 (268)
+..|+ +++++||++|.|++++++.+.+..
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 77887 799999999999999999997654
No 213
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.06 E-value=1e-10 Score=98.86 Aligned_cols=106 Identities=5% Similarity=-0.028 Sum_probs=69.4
Q ss_pred CCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHH---HHH-Hh--CCCCceEEEEeC-CCCCCCCCccchhch
Q 041042 139 VTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQ---QAR-KC--NQTAIPIIIGTK-FDDFIQLPIDLQWTI 211 (268)
Q Consensus 139 t~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~---~i~-~~--~~~~~~ilvgnK-~Dl~~~~~~~~~~~~ 211 (268)
.+||+.++.+|+.||.++|++|+|+|.+|.+.++ ...-+. .+. .. ..+.|.+|.+|| .|+...++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~------ 266 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPC------ 266 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCH------
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCH------
Confidence 5789999999999999999999999999988654 222222 121 11 235556688896 686333222
Q ss_pred HHHHHHHHH----HhCCeEEEEcCCCCcCHHHHHHHHHHHHhcCc
Q 041042 212 ASQARAYAK----ALNATLFFSSATYNINVNKILKFITAKLFDIP 252 (268)
Q Consensus 212 ~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~f~~l~~~i~~~~ 252 (268)
.++.+... .....+..|||++|+|+.|.++||++.+..+.
T Consensus 267 -~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 267 -FYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp -HHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred -HHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 22211111 13455777999999999999999999886553
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.95 E-value=8.6e-10 Score=97.75 Aligned_cols=101 Identities=16% Similarity=0.146 Sum_probs=76.1
Q ss_pred CccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccc-hhchHHHHHHHH
Q 041042 141 GDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDL-QWTIASQARAYA 219 (268)
Q Consensus 141 G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~-~~~~~~~~~~~~ 219 (268)
.++.|..+...+++.++++++|+|+++..+ .|...+.+...+.+.++|+||+|| ++.+. .....+....++
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DL---l~~~~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADL---LPRSVKYPKLLRWMRRMA 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGG---SCTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhc---CCCccCHHHHHHHHHHHH
Confidence 578999999999999999999999999774 455566666556677899999998 33321 122234445556
Q ss_pred HHhCC---eEEEEcCCCCcCHHHHHHHHHHHHh
Q 041042 220 KALNA---TLFFSSATYNINVNKILKFITAKLF 249 (268)
Q Consensus 220 ~~~~~---~~~~~Sa~~~~~i~~~f~~l~~~i~ 249 (268)
+..|. .++.+||++|.|++++++.+.+...
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 77787 7899999999999999999877653
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.67 E-value=5.3e-08 Score=87.30 Aligned_cols=143 Identities=13% Similarity=0.153 Sum_probs=72.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCC--CcceeeEEEEEEE--CCeEEEEEEEeCCCcccc-------c-----
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSP--GEGLNMMDKTLLV--RGARISYSIWEVTGDAKA-------Q----- 146 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~--t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~-------~----- 146 (268)
.++++|+|.+|+|||||++.+.+..+...... +.+.......+.. .+....+.++|+.|-... .
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 36799999999999999999988754321111 1121111111222 223346889999874321 0
Q ss_pred ------cchhhh---------hcCC--cE-EEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccch
Q 041042 147 ------DHLPVA---------CKDS--IA-ILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQ 208 (268)
Q Consensus 147 ------~~~~~~---------~~~a--~~-vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~ 208 (268)
.+...+ ..++ |+ ++++.|....-+-.+ ++.++......++|+|.||+|. +.....
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----ieilk~L~~~~~vI~Vi~KtD~---Lt~~E~ 194 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----LVTMKKLDSKVNIIPIIAKADA---ISKSEL 194 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----HHHHHHTCSCSEEEEEESCGGG---SCHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----HHHHHHHhhCCCEEEEEcchhc---cchHHH
Confidence 001111 1122 33 555556543322222 2223333445566799999996 444333
Q ss_pred hchHHHHHHHHHHhCCeEEEEcCC
Q 041042 209 WTIASQARAYAKALNATLFFSSAT 232 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~Sa~ 232 (268)
......+..-....|++++.+|..
T Consensus 195 ~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 195 TKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHHHHHHHHHcCCcEEecCCC
Confidence 333445554445578888887753
No 216
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.59 E-value=1.1e-07 Score=80.66 Aligned_cols=139 Identities=9% Similarity=0.156 Sum_probs=73.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCC---------CCCCcceeeEEEEEEECCeEEEEEEEeCCCccccc-------
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQG---------GSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQ------- 146 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------- 146 (268)
.++++|+|++|+|||||++.+.+...... ...+...........-.+....+.++|+.|-....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 48999999999999999999987432111 01111000000000111222367899998732110
Q ss_pred cch---------------------hhhhcCCcEEEEEEeCC-ChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCC
Q 041042 147 DHL---------------------PVACKDSIAILFMFDLT-SRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLP 204 (268)
Q Consensus 147 ~~~---------------------~~~~~~a~~vilv~D~~-~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~ 204 (268)
.+. +..+..+++++++.|.. ..-+-.+ ...+..+.. ...+|+|.||+|. +.
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~---~~~vI~Vi~K~D~---lt 154 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK---VVNIIPVIAKADT---MT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT---TSEEEEEETTGGG---SC
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh---cCcEEEEEecccc---CC
Confidence 000 01123468889999854 2111111 223333332 3555799999997 44
Q ss_pred ccchhchHHHHHHHHHHhCCeEEE
Q 041042 205 IDLQWTIASQARAYAKALNATLFF 228 (268)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~ 228 (268)
.+........+.+..+.+++.+|.
T Consensus 155 ~~e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 155 LEEKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHHHcCccccC
Confidence 443333456666667777887664
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.50 E-value=1.7e-07 Score=85.99 Aligned_cols=150 Identities=14% Similarity=0.121 Sum_probs=83.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHh------cCCC---CC-CCCCCc-----------ceeeEEEEEE-------------EC
Q 041042 83 ALKISLLGDCHIGKTSFLEKYV------GDEK---EQ-GGSPGE-----------GLNMMDKTLL-------------VR 128 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~------~~~~---~~-~~~~t~-----------~~~~~~~~~~-------------~~ 128 (268)
...|+++|.+||||||++++|. +.+. .. .+.+.. +..+...... ..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999998 3321 00 111100 1111110000 00
Q ss_pred CeEEEEEEEeCCCccccc-cchhh---h--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCC
Q 041042 129 GARISYSIWEVTGDAKAQ-DHLPV---A--CKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFI 201 (268)
Q Consensus 129 ~~~~~l~i~Dt~G~~~~~-~~~~~---~--~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~ 201 (268)
...+.+.|+||+|..... .+... . +..+|.+++|+|++...... .....+.. ..++ +||.||+|..
T Consensus 181 ~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~---~~~i~gvVlNK~D~~- 253 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD---KVDVASVIVTKLDGH- 253 (504)
T ss_dssp HTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH---HHCCCCEEEECTTSC-
T ss_pred HCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh---hcCceEEEEeCCccc-
Confidence 023468899999965321 11111 1 23789999999987654311 11222222 1243 6999999962
Q ss_pred CCCccchhchHHHHHHHHHHhCCeE------------------EEEcCCCCcC-HHHHHHHHHHH
Q 041042 202 QLPIDLQWTIASQARAYAKALNATL------------------FFSSATYNIN-VNKILKFITAK 247 (268)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~~f~~l~~~ 247 (268)
. .. ..+.......+.++ +.+|+.+|.| +.++++++.+.
T Consensus 254 ---~--~~---g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 254 ---A--KG---GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp ---C--CC---THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ---c--ch---HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 1 11 11222334455543 2378999999 99999888765
No 218
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.49 E-value=1.2e-08 Score=90.46 Aligned_cols=137 Identities=11% Similarity=0.159 Sum_probs=76.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC------CCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccc--------h
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD------EKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDH--------L 149 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~ 149 (268)
.+|+++|.+|||||||+|++.+. .......+ |.+.....+.++.. +.++||||-.....+ .
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999999875 22222222 22233333444432 689999995432211 1
Q ss_pred hhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC-CCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeE
Q 041042 150 PVAC--KDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQ-TAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATL 226 (268)
Q Consensus 150 ~~~~--~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (268)
..++ +..+.++++.|....--+..+.. +..... +.+.+++.||.|. + ...........+.+..|...
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~---~---~~~~~~~~~~~~~~~~g~~l 307 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELT---V---HRTKLEKADSLYANQLGELL 307 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSC---E---EEEEGGGHHHHHHHHBTTTB
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcc---c---ccccHHHHHHHHHHhcCCcc
Confidence 1222 67889999998732211111110 111112 3344699999996 2 22233444555667777665
Q ss_pred EEEcCCCCc
Q 041042 227 FFSSATYNI 235 (268)
Q Consensus 227 ~~~Sa~~~~ 235 (268)
...++.+..
T Consensus 308 ~p~~~~~~~ 316 (369)
T 3ec1_A 308 SPPSKRYAA 316 (369)
T ss_dssp CSSCGGGTT
T ss_pred CCCCchhhh
Confidence 555554433
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.45 E-value=2.1e-06 Score=76.89 Aligned_cols=162 Identities=12% Similarity=0.113 Sum_probs=88.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCc-ceee--EEEEEEECCeEEEEEEEeCCCccccccchhhh-----hcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGE-GLNM--MDKTLLVRGARISYSIWEVTGDAKAQDHLPVA-----CKD 155 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~-~~~~--~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~-----~~~ 155 (268)
..++|+|.+|+|||||+|.+.+-.....-.-++ |.+. ...... +...-.+.+||++|-.........+ +..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 379999999999999999998843211111011 1111 001111 1111146789999853211111222 233
Q ss_pred CcEEEEEEeCC--ChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCC------CCCCccchhchHHHHHHHHH----HhC
Q 041042 156 SIAILFMFDLT--SRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDF------IQLPIDLQWTIASQARAYAK----ALN 223 (268)
Q Consensus 156 a~~vilv~D~~--~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~------~~~~~~~~~~~~~~~~~~~~----~~~ 223 (268)
.+.+++ ++.. ..... .+..++ .. .+.+.++|.||.|+. ..+....+....+.+.+++. +.|
T Consensus 149 ~~~~~~-lS~G~~~kqrv-~la~aL---~~--~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 149 YDFFII-ISATRFKKNDI-DIAKAI---SM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp CSEEEE-EESSCCCHHHH-HHHHHH---HH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCeEE-eCCCCccHHHH-HHHHHH---Hh--cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455554 7765 32222 122222 22 134557999999952 12222334444555666652 333
Q ss_pred ---CeEEEEcC--CCCcCHHHHHHHHHHHHhcCcc
Q 041042 224 ---ATLFFSSA--TYNINVNKILKFITAKLFDIPW 253 (268)
Q Consensus 224 ---~~~~~~Sa--~~~~~i~~~f~~l~~~i~~~~~ 253 (268)
...+.+|+ ..+.|++++.+.+.+.+.+.++
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~ 256 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR 256 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHHHhCccchh
Confidence 35788999 6667799999999988876653
No 220
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.44 E-value=1.1e-08 Score=90.46 Aligned_cols=134 Identities=10% Similarity=0.084 Sum_probs=71.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCC-----CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccccccc----hh----
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKE-----QGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAKAQDH----LP---- 150 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----~~---- 150 (268)
.+|+++|.+|||||||+|++.+.... .......|.+.....+.++.. +.++||||-.....+ ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 57999999999999999999875311 101111122333333444433 779999996432211 11
Q ss_pred hh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEE
Q 041042 151 VA--CKDSIAILFMFDLTSRCTLKSVIRWYQQARKCN-QTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLF 227 (268)
Q Consensus 151 ~~--~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (268)
.+ .+..+.+++++|....--+..+.. +.... ...+.+++.||.|. -...........+.+..|....
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~------~~~~~~~~~~~~~~~~~g~~l~ 307 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLT------IHRTKLEKADELYKNHAGDLLS 307 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSC------EEEEEHHHHHHHHHHHBTTTBC
T ss_pred HhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccc------cccccHHHHHHHHHHHhCCccC
Confidence 11 256788888888632111111110 11111 23344699999996 2233345555566666776544
Q ss_pred EEc
Q 041042 228 FSS 230 (268)
Q Consensus 228 ~~S 230 (268)
..+
T Consensus 308 p~~ 310 (368)
T 3h2y_A 308 PPT 310 (368)
T ss_dssp SSC
T ss_pred CCc
Confidence 444
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.40 E-value=4.4e-07 Score=77.28 Aligned_cols=101 Identities=13% Similarity=0.038 Sum_probs=68.4
Q ss_pred EEeCCCcc-ccccchhhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchH
Q 041042 136 IWEVTGDA-KAQDHLPVACKDSIAILFMFDLTSRCTLK--SVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIA 212 (268)
Q Consensus 136 i~Dt~G~~-~~~~~~~~~~~~a~~vilv~D~~~~~s~~--~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~ 212 (268)
|-..||+. .........+..+|+++.|+|+.++.+.. .+..|+ .+.+.++|+||+|| .+. . ..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL---~~~---~-~~ 68 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADK---ADA---A-VT 68 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGG---SCH---H-HH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECccc---CCH---H-HH
Confidence 34467765 33445566789999999999999987764 344443 45667899999997 221 1 12
Q ss_pred HHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHHhc
Q 041042 213 SQARAYAKALNATLFFSSATYNINVNKILKFITAKLFD 250 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~i~~ 250 (268)
+...++.+..+++++.+||+++.|++++++.+.+.+.+
T Consensus 69 ~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 69 QQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 33344455568899999999999999999988776653
No 222
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.33 E-value=2.1e-07 Score=78.51 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=36.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK 144 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 144 (268)
++++++|.+|||||||+|++.+.... ...++.|.+.....+.++. .+.+|||+|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS-SVGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc-ccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 69999999999999999999987652 2233334443333333332 478999999654
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.21 E-value=1.1e-06 Score=74.73 Aligned_cols=57 Identities=16% Similarity=0.365 Sum_probs=34.9
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhcCCC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCcc
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVGDEK-EQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDA 143 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 143 (268)
..++|+++|.+|||||||+|++.+... .....+ |.+.....+.++. .+.+|||||..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~--g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRP--GITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCC--CeeeeeEEEEeCC---CEEEEECcCcC
Confidence 358999999999999999999998752 222222 2222222223322 47799999964
No 224
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.19 E-value=2.1e-08 Score=91.63 Aligned_cols=101 Identities=14% Similarity=0.067 Sum_probs=64.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCccc--cccch--------hhh
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGEGLNMMDKTLLVRGARISYSIWEVTGDAK--AQDHL--------PVA 152 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~~~~--------~~~ 152 (268)
.++|+++|.+|+||||+.++|...-. ....++.+.+.........+......+||..|++. ++..+ ..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~ 117 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF 117 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh-ccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999876422 11223322221100001112223356899999843 23332 567
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC
Q 041042 153 CKDSIAILFMFDLTSRCTLKSVIRWYQQARKCN 185 (268)
Q Consensus 153 ~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~ 185 (268)
+..+++.++|+|.++. +++....|++.+++..
T Consensus 118 l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~ 149 (469)
T 1bif_A 118 LSEEGGHVAVFDATNT-TRERRAMIFNFGEQNG 149 (469)
T ss_dssp HHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHT
T ss_pred HHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcC
Confidence 7778899999999987 6777778888777653
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.98 E-value=1.5e-06 Score=78.35 Aligned_cols=83 Identities=19% Similarity=0.127 Sum_probs=46.4
Q ss_pred EEEEEEeCCCcccccc-chh-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCC-c-eEEEEeCCCCCCCC
Q 041042 132 ISYSIWEVTGDAKAQD-HLP-----VACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTA-I-PIIIGTKFDDFIQL 203 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~-~~~-----~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~-~-~ilvgnK~Dl~~~~ 203 (268)
+.+.|+||+|...... +.. ..+..+|.+++|.|.+.... .... +..+.... + ..+|.||+|..
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~---~~~~~~~~~~i~gvVlnK~D~~--- 251 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQ---AKAFKEAVGEIGSIIVTKLDGS--- 251 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHH---HHHHHTTSCSCEEEEEECSSSC---
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHH---HHHHhhcccCCeEEEEeCCCCc---
Confidence 4578999999654211 111 11236899999999865432 1122 22333333 4 36999999951
Q ss_pred CccchhchHHHHHHHHHHhCCeEEEE
Q 041042 204 PIDLQWTIASQARAYAKALNATLFFS 229 (268)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (268)
.. ...+..+....+.++..+
T Consensus 252 ---~~---~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 252 ---AK---GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp ---ST---THHHHHHHHHSSCCEEEE
T ss_pred ---cc---hHHHHHHHHHHCCCEEEe
Confidence 11 122334666777776555
No 226
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.97 E-value=6.1e-06 Score=74.29 Aligned_cols=92 Identities=16% Similarity=0.121 Sum_probs=53.5
Q ss_pred EEEEEEeCCCcccccc-----chh-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCCCC
Q 041042 132 ISYSIWEVTGDAKAQD-----HLP-VACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQLP 204 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~-----~~~-~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~~~ 204 (268)
+.+.|+||+|...... +.. .....+|.+++|.|++....-. .....+.. ...+ .||.||.|.
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~---~~~i~gVIlTKlD~----- 251 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKE---ATPIGSIIVTKLDG----- 251 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHH---SCTTEEEEEECCSS-----
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHh---hCCCeEEEEECCCC-----
Confidence 5688999999433211 111 1123679999999987643321 12222222 2334 599999995
Q ss_pred ccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 205 IDLQWTIASQARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
.. ....+.......+.|+.+++. |++++++
T Consensus 252 -~~---~gG~~ls~~~~~g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 252 -SA---KGGGALSAVAATGAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp -CS---SHHHHHHHHHTTCCCEEEEEC--SSSTTCE
T ss_pred -cc---cccHHHHHHHHHCCCEEEEEc--CCChHHh
Confidence 11 123345566678999888775 6665443
No 227
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.86 E-value=1e-05 Score=69.52 Aligned_cols=92 Identities=11% Similarity=0.079 Sum_probs=61.5
Q ss_pred ccchhhhhcCCcEEEEEEeCCChhh-HHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCC
Q 041042 146 QDHLPVACKDSIAILFMFDLTSRCT-LKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNA 224 (268)
Q Consensus 146 ~~~~~~~~~~a~~vilv~D~~~~~s-~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (268)
..+.+....++|.+++|+|+.++.. ...+.+++..+. ..+.+|+||.||+|| .++.......+...++.+..|.
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~--~~~~~~vivlnK~DL---~~~~~~~~~~~~~~~~y~~~g~ 151 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE--ANDIQPIICITKMDL---IEDQDTEDTIQAYAEDYRNIGY 151 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH--TTTCEEEEEEECGGG---CCCHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH--HCCCCEEEEEECCcc---CchhhhHHHHHHHHHHHHhCCC
Confidence 4455567889999999999987653 445555554333 346778999999997 3221100112334455556788
Q ss_pred eEEEEcCCCCcCHHHHHH
Q 041042 225 TLFFSSATYNINVNKILK 242 (268)
Q Consensus 225 ~~~~~Sa~~~~~i~~~f~ 242 (268)
+.+.+||+++.|+++++.
T Consensus 152 ~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 152 DVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp CEEECCHHHHTTCTTTGG
T ss_pred eEEEEecCCCCCHHHHHh
Confidence 999999999988877654
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.77 E-value=1.7e-05 Score=66.70 Aligned_cols=91 Identities=10% Similarity=-0.000 Sum_probs=60.0
Q ss_pred CCCcccc-ccchhhhhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHH
Q 041042 139 VTGDAKA-QDHLPVACKDSIAILFMFDLTSRCTLKS--VIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQA 215 (268)
Q Consensus 139 t~G~~~~-~~~~~~~~~~a~~vilv~D~~~~~s~~~--~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~ 215 (268)
.||+... .......+.++|+++.|+|+.++.+..+ +. |+ +.++++|.||+|| .+. . ..+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll--------~k~~iivlNK~DL---~~~---~-~~~~~ 67 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS--------RKETIILLNKVDI---ADE---K-TTKKW 67 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT--------TSEEEEEEECGGG---SCH---H-HHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc--------CCCcEEEEECccC---CCH---H-HHHHH
Confidence 3555432 2345567889999999999998876542 22 21 5567899999997 221 1 12233
Q ss_pred HHHHHHhCCeEEEEcCCCCcCHHHHHHHHHH
Q 041042 216 RAYAKALNATLFFSSATYNINVNKILKFITA 246 (268)
Q Consensus 216 ~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~ 246 (268)
.++.++.|.++ .+||+++.|++++++.+..
T Consensus 68 ~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 68 VEFFKKQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHHHHHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HHHHHHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 44555668888 9999999999999877643
No 229
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.76 E-value=3.5e-05 Score=71.87 Aligned_cols=64 Identities=11% Similarity=0.081 Sum_probs=39.0
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcCCCCCCCCCCc-ceeeEEEE--EEE-CCeEEEEEEEeCCCccc
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGDEKEQGGSPGE-GLNMMDKT--LLV-RGARISYSIWEVTGDAK 144 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~~~~~~~~~t~-~~~~~~~~--~~~-~~~~~~l~i~Dt~G~~~ 144 (268)
....+|+|+|.+|||||||+|++.+....-....|+ +.+..... ..+ ......+.++||+|...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 345889999999999999999999876321222221 11111111 111 12234578999999653
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.70 E-value=4.7e-05 Score=65.18 Aligned_cols=92 Identities=15% Similarity=0.125 Sum_probs=55.5
Q ss_pred EEEEEEeCCCccc--cc-cchh-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCCC
Q 041042 132 ISYSIWEVTGDAK--AQ-DHLP-----VACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDDFIQ 202 (268)
Q Consensus 132 ~~l~i~Dt~G~~~--~~-~~~~-----~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl~~~ 202 (268)
+.+.++||+|... .. .+.. .....+|.+++|.|.+... +.......+.. ..++ .+|.||.|..
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~---~~~i~gvVlnk~D~~-- 252 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ---ASKIGTIIITKMDGT-- 252 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH---TCTTEEEEEECGGGC--
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh---hCCCCEEEEeCCCCC--
Confidence 4588999999765 21 1211 1245789999999986432 22222222222 3343 5899999941
Q ss_pred CCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 203 LPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
. ....+..++...+.++..++ +|++++++
T Consensus 253 -----~--~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 253 -----A--KGGGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp -----T--THHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred -----c--chHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 1 12345567788899988876 57777554
No 231
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.69 E-value=1.9e-05 Score=71.05 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=53.0
Q ss_pred EEEEEEEeCCCccc--cc-cchh---h--hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCC
Q 041042 131 RISYSIWEVTGDAK--AQ-DHLP---V--ACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQ 202 (268)
Q Consensus 131 ~~~l~i~Dt~G~~~--~~-~~~~---~--~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~ 202 (268)
.+.+.+.||+|... .. .+.. . -....+.+++|.|.+....-. .....+... -.+-.||.||.|.
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~--~~~~gVIlTKlD~--- 250 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQA--SPIGSVIITKMDG--- 250 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHH--CSSEEEEEECGGG---
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhcc--cCCcEEEEecccc---
Confidence 34577999999533 11 1111 1 112568999999987643322 222223221 1233699999994
Q ss_pred CCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHH
Q 041042 203 LPIDLQWTIASQARAYAKALNATLFFSSATYNINVN 238 (268)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 238 (268)
. .....+.......+.|+.+++. |++++
T Consensus 251 ---~---a~~G~als~~~~~g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 251 ---T---AKGGGALSAVVATGATIKFIGT--GEKID 278 (433)
T ss_dssp ---C---SCHHHHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred ---c---ccchHHHHHHHHHCCCEEEEEC--CCChH
Confidence 1 1123455666778999888875 66653
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.51 E-value=0.00053 Score=60.04 Aligned_cols=86 Identities=10% Similarity=0.108 Sum_probs=56.3
Q ss_pred hhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhchHHHHHHHHHHhCCeEEEE
Q 041042 151 VACKDSIAILFMFDLTSRC-TLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFS 229 (268)
Q Consensus 151 ~~~~~a~~vilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (268)
....++|.+++|... ++. +...+.+++-..... +.+||||.||+|| .+++ .....++.....+..|++.+.+
T Consensus 126 ~i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL---~~~~-~~~~~~~~~~~y~~~G~~v~~~ 198 (358)
T 2rcn_A 126 PIAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDL---LDDE-GMDFVNEQMDIYRNIGYRVLMV 198 (358)
T ss_dssp EEEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGG---CCHH-HHHHHHHHHHHHHTTTCCEEEC
T ss_pred HHHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccC---CCch-hHHHHHHHHHHHHhCCCcEEEE
Confidence 346889999988665 454 445555665544332 5677999999997 3321 1111222233345678999999
Q ss_pred cCCCCcCHHHHHHH
Q 041042 230 SATYNINVNKILKF 243 (268)
Q Consensus 230 Sa~~~~~i~~~f~~ 243 (268)
||+++.|++++...
T Consensus 199 Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 199 SSHTQDGLKPLEEA 212 (358)
T ss_dssp BTTTTBTHHHHHHH
T ss_pred ecCCCcCHHHHHHh
Confidence 99999999988654
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.24 E-value=0.00017 Score=62.59 Aligned_cols=91 Identities=15% Similarity=0.223 Sum_probs=53.0
Q ss_pred EEEEeCCCcccccc-chhh-----hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccc
Q 041042 134 YSIWEVTGDAKAQD-HLPV-----ACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDL 207 (268)
Q Consensus 134 l~i~Dt~G~~~~~~-~~~~-----~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~ 207 (268)
+.+.||+|...... +... -.-..|-.+++.|.+... ++......+.+. ..+-+|+.||.|. .
T Consensus 214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~--~~it~iilTKlD~------~- 281 (328)
T 3e70_C 214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA--VKIDGIILTKLDA------D- 281 (328)
T ss_dssp EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH--SCCCEEEEECGGG------C-
T ss_pred hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh--cCCCEEEEeCcCC------c-
Confidence 55799999643221 1111 012478889999976543 222333333221 2344799999993 1
Q ss_pred hhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 208 QWTIASQARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
. ....+...+...+.++..++ +|++++++
T Consensus 282 a--~~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 282 A--RGGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp S--CCHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred c--chhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 1 12335567788899988877 77777554
No 234
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.13 E-value=0.00053 Score=64.43 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDE 107 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~ 107 (268)
.++|+|++|+|||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999998864
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.94 E-value=0.00076 Score=60.79 Aligned_cols=64 Identities=11% Similarity=0.191 Sum_probs=39.7
Q ss_pred ceeEEEEEEcCCCChHHHHHHHHhcC------------------CCCCC---CCCCcceeeEEEEE--E-ECCeEEEEEE
Q 041042 81 LVALKISLLGDCHIGKTSFLEKYVGD------------------EKEQG---GSPGEGLNMMDKTL--L-VRGARISYSI 136 (268)
Q Consensus 81 ~~~~ki~vlG~~~vGKSsLi~~l~~~------------------~~~~~---~~~t~~~~~~~~~~--~-~~~~~~~l~i 136 (268)
.+..-|.|+|.+++|||+|+|++++. .|... ...|.|+-.....+ . .++....+.+
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 34567889999999999999999852 23211 11233332211111 1 1456788999
Q ss_pred EeCCCccc
Q 041042 137 WEVTGDAK 144 (268)
Q Consensus 137 ~Dt~G~~~ 144 (268)
.||+|...
T Consensus 145 lDTeG~~~ 152 (447)
T 3q5d_A 145 MDTQGTFD 152 (447)
T ss_dssp EEEECCCS
T ss_pred EcCCcccc
Confidence 99999643
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.66 E-value=0.00088 Score=52.69 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.+++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999988764
No 237
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.56 E-value=0.0026 Score=57.23 Aligned_cols=63 Identities=13% Similarity=0.094 Sum_probs=36.0
Q ss_pred EEEEEEEeCCCccccc-cchh-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCce-EEEEeCCCC
Q 041042 131 RISYSIWEVTGDAKAQ-DHLP-----VACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIP-IIIGTKFDD 199 (268)
Q Consensus 131 ~~~l~i~Dt~G~~~~~-~~~~-----~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~Dl 199 (268)
.+.+.|+||+|..... .+.. .....++.+++|.|....... ......+. ...++ -+|.||.|.
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~---~~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFN---EALPLTGVVLTKVDG 252 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHH---HHSCCCCEEEECTTS
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHh---ccCCCeEEEEecCCC
Confidence 3458899999964432 1111 124478899999998644322 12222222 22233 389999994
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.44 E-value=0.0014 Score=51.36 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-++|+|++|||||||++.+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999998763
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.33 E-value=0.0018 Score=51.71 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.++|+|++|+|||||++.+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999876
No 240
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.16 E-value=0.0026 Score=49.92 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-.++|+|.+|+|||||++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999999775
No 241
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.13 E-value=0.0025 Score=50.16 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=18.9
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 041042 86 ISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~ 106 (268)
++|+|++|+|||||++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999998753
No 242
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.11 E-value=0.0026 Score=50.46 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-++|+|.+|+|||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999998764
No 243
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.09 E-value=0.0027 Score=50.86 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-++|+|++|+|||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999998764
No 244
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.09 E-value=0.0027 Score=49.32 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=17.7
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 041042 85 KISLLGDCHIGKTSFLEKYV 104 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~ 104 (268)
-++++|.+|+|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 57899999999999999754
No 245
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.08 E-value=0.0028 Score=50.66 Aligned_cols=24 Identities=13% Similarity=0.379 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcC
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.--|+|+|++|||||||++.|.+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999999754
No 246
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.07 E-value=0.0028 Score=51.53 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
--++|+|++|+|||||++.+.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36889999999999999998764
No 247
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.00 E-value=0.0031 Score=51.08 Aligned_cols=22 Identities=18% Similarity=0.523 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|++|+|||||++.+.+-
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999998764
No 248
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.99 E-value=0.0037 Score=49.50 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=19.1
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 041042 86 ISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~ 106 (268)
|+|+|++|||||||++++...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 249
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.88 E-value=0.0039 Score=50.04 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-|+|+|++|+|||||++.+.+.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999999765
No 250
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.83 E-value=0.0045 Score=54.11 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcCC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDE 107 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~ 107 (268)
.++++|.+|||||||+|.+.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 68999999999999999998764
No 251
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.82 E-value=0.0044 Score=47.69 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDE 107 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~ 107 (268)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999987754
No 252
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.82 E-value=0.0038 Score=50.00 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcC
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
...|.|+|.+|+|||||++.+.+-
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988653
No 253
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.79 E-value=0.0061 Score=48.35 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=18.9
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 041042 86 ISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~ 106 (268)
+++.|++|+|||+|++.+...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988653
No 254
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.78 E-value=0.0047 Score=50.73 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999988664
No 255
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.70 E-value=0.0052 Score=47.34 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
..|+|+|.+|+||||+.+.+.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999988653
No 256
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.69 E-value=0.0057 Score=48.78 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.-|+|+|.+|||||||++.+...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999998653
No 257
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.67 E-value=0.0053 Score=50.02 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988664
No 258
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.67 E-value=0.0059 Score=46.80 Aligned_cols=21 Identities=24% Similarity=0.044 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 259
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.63 E-value=0.0063 Score=50.15 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++++|+.|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998774
No 260
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.63 E-value=0.0056 Score=48.03 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
-++++|.+|+|||||++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 261
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.63 E-value=0.0055 Score=48.58 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGDE 107 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~~ 107 (268)
..|+|+|.+|+||||+++.+.+.-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999987653
No 262
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.61 E-value=0.0051 Score=48.78 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
+++++|.+|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5889999999999999988763
No 263
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.60 E-value=0.0064 Score=46.54 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=18.3
Q ss_pred EEEEEEcCCCChHHHHHHHH
Q 041042 84 LKISLLGDCHIGKTSFLEKY 103 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l 103 (268)
.-|+|+|.+|+||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35889999999999999998
No 264
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.60 E-value=0.0072 Score=49.66 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=19.7
Q ss_pred EEEEEEcCCCChHHHHHHHHh
Q 041042 84 LKISLLGDCHIGKTSFLEKYV 104 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~ 104 (268)
..|+|+|.+|+|||||++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999997
No 265
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.58 E-value=0.006 Score=48.47 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=19.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
--|+|+|.+|+|||||++.+.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 266
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.56 E-value=0.007 Score=46.74 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.-|++.|.+|+||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999976
No 267
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.55 E-value=0.0065 Score=50.74 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-++|+|+.|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 268
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.54 E-value=0.0069 Score=49.05 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 269
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.54 E-value=0.0072 Score=49.66 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999998664
No 270
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.54 E-value=0.0069 Score=48.55 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
++|+|.|.+|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
No 271
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.51 E-value=0.0073 Score=48.19 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
...|.|+|.+|+|||||++.+.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 272
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.51 E-value=0.0075 Score=48.38 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=19.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
++|+|+|.+|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
No 273
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.51 E-value=0.003 Score=54.08 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-.++++|.+|||||||+|.+.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 37899999999999999999775
No 274
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.50 E-value=0.0077 Score=49.67 Aligned_cols=22 Identities=18% Similarity=0.159 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999998764
No 275
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.49 E-value=0.0076 Score=49.86 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998664
No 276
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.48 E-value=0.0072 Score=50.91 Aligned_cols=22 Identities=23% Similarity=0.564 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988764
No 277
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.47 E-value=0.0058 Score=47.59 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-.++++|++|+|||+|++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988654
No 278
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.46 E-value=0.0072 Score=50.29 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998764
No 279
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.43 E-value=0.02 Score=42.85 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.|++.|++|+|||++++.+...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999877543
No 280
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.43 E-value=0.0069 Score=51.60 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDE 107 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~ 107 (268)
-++++|.+|||||||++.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 67899999999999999997753
No 281
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.42 E-value=0.0077 Score=50.36 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4779999999999999988764
No 282
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.42 E-value=0.0077 Score=50.43 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4779999999999999998774
No 283
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.42 E-value=0.0087 Score=48.90 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998764
No 284
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.42 E-value=0.0076 Score=47.13 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.-++++|.+|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35789999999999999998764
No 285
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.41 E-value=0.025 Score=50.87 Aligned_cols=63 Identities=13% Similarity=0.273 Sum_probs=40.1
Q ss_pred eeEEEEEEcCCCChHHHHHHHHh------------------cCCCCC---CCCCCcceeeEEEEEEE---CCeEEEEEEE
Q 041042 82 VALKISLLGDCHIGKTSFLEKYV------------------GDEKEQ---GGSPGEGLNMMDKTLLV---RGARISYSIW 137 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~------------------~~~~~~---~~~~t~~~~~~~~~~~~---~~~~~~l~i~ 137 (268)
...=|.|+|..++|||+|+|.++ ...|.. ....|.|+-.....+.+ ++..+.+.+.
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 34556699999999999999553 123322 12235565443322222 5778899999
Q ss_pred eCCCccc
Q 041042 138 EVTGDAK 144 (268)
Q Consensus 138 Dt~G~~~ 144 (268)
||.|...
T Consensus 146 DTEG~~d 152 (457)
T 4ido_A 146 DTQGTFD 152 (457)
T ss_dssp EECCBTC
T ss_pred eccCCCC
Confidence 9999543
No 286
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.40 E-value=0.0074 Score=47.89 Aligned_cols=22 Identities=27% Similarity=0.228 Sum_probs=19.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..|+|+|.+|+||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 287
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.39 E-value=0.0084 Score=47.57 Aligned_cols=22 Identities=27% Similarity=0.387 Sum_probs=19.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
-.|+++|.+|+||||+.+.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 288
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.39 E-value=0.008 Score=49.49 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998764
No 289
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.39 E-value=0.0084 Score=46.36 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.-|++.|.+|+||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999865
No 290
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.38 E-value=0.0081 Score=47.40 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.|+|.|.+|+||||+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998865
No 291
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.38 E-value=0.0082 Score=49.75 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998664
No 292
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.37 E-value=0.0086 Score=49.62 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 293
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.36 E-value=0.0088 Score=50.08 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 294
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.35 E-value=0.01 Score=45.76 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..|+|+|.+|+||||+.+.+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998854
No 295
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.35 E-value=0.0085 Score=49.89 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
No 296
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.34 E-value=0.0079 Score=47.71 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.+|+|+|.+|+||||+.+.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 297
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.33 E-value=0.0094 Score=50.28 Aligned_cols=22 Identities=32% Similarity=0.249 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999988764
No 298
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.32 E-value=0.0093 Score=49.73 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6889999999999999998764
No 299
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.31 E-value=0.011 Score=46.21 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.|+|.|.+|+||||+.+.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 300
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.29 E-value=0.01 Score=46.28 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=19.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..|+|.|.+|+||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 301
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.28 E-value=0.0088 Score=52.31 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcC
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.-|++|+|.+|+|||||++.+.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 302
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.28 E-value=0.0097 Score=49.94 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988764
No 303
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.28 E-value=0.009 Score=50.94 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=19.4
Q ss_pred EEEEEEcCCCChHHHHHHHHh
Q 041042 84 LKISLLGDCHIGKTSFLEKYV 104 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~ 104 (268)
--++++|.+|||||||+|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 367899999999999999998
No 304
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.26 E-value=0.012 Score=46.61 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=20.8
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhc
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..+.|+|+|.+|+||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998854
No 305
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.26 E-value=0.0097 Score=48.55 Aligned_cols=20 Identities=30% Similarity=0.622 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 041042 85 KISLLGDCHIGKTSFLEKYV 104 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~ 104 (268)
-++|+|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 57899999999999999887
No 306
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.26 E-value=0.0055 Score=47.80 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.+.|+|.+|+|||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998764
No 307
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.23 E-value=0.0083 Score=48.28 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-++|+|++|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999774
No 308
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.22 E-value=0.0091 Score=49.83 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=19.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
=.++|+|++|+|||||++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3689999999999999999866
No 309
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.21 E-value=0.0095 Score=50.91 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
=.++|+|++|+|||||++.+.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 3799999999999999998875
No 310
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.20 E-value=0.014 Score=45.48 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
...|+++|.+|+||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998863
No 311
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.20 E-value=0.0099 Score=49.37 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998764
No 312
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.19 E-value=0.0095 Score=47.29 Aligned_cols=23 Identities=17% Similarity=0.024 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.-|+|+|.+|+|||||.+.+.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999988653
No 313
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.18 E-value=0.01 Score=49.70 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998764
No 314
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.17 E-value=0.0068 Score=49.28 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=14.9
Q ss_pred EEEEEcCCCChHHHHHHHHh-cC
Q 041042 85 KISLLGDCHIGKTSFLEKYV-GD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~-~~ 106 (268)
-++|+|.+|+|||||++.+. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58899999999999999998 53
No 315
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.15 E-value=0.012 Score=49.28 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999998764
No 316
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.14 E-value=0.0076 Score=48.55 Aligned_cols=22 Identities=23% Similarity=0.084 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998764
No 317
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.13 E-value=0.01 Score=45.79 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.+++.|++|+|||+|++.+...
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988654
No 318
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.10 E-value=0.011 Score=47.51 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.+|.|+|.+|+||||+.+.+.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 319
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.09 E-value=0.015 Score=46.10 Aligned_cols=22 Identities=23% Similarity=0.098 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..|+|.|.+|+||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 320
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.09 E-value=0.011 Score=47.32 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
++|+|.|.+|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
No 321
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.09 E-value=0.015 Score=45.43 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
...|+|.|.+|+||||+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988754
No 322
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.09 E-value=0.012 Score=47.21 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=19.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
+.|+++|.||+||+|...++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 323
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.08 E-value=0.015 Score=46.26 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
+.|.|+|.+|+||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 324
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.05 E-value=0.04 Score=47.45 Aligned_cols=20 Identities=20% Similarity=0.203 Sum_probs=18.7
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 041042 86 ISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~ 105 (268)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998866
No 325
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.04 E-value=0.015 Score=45.46 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=19.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..|++.|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 326
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.02 E-value=0.014 Score=45.51 Aligned_cols=22 Identities=32% Similarity=0.286 Sum_probs=19.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..|+++|.+|+||||+.+.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998854
No 327
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.01 E-value=0.01 Score=50.77 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.++|+|.+|+|||||++.+.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 688999999999999998865
No 328
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.93 E-value=0.012 Score=50.48 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..-|.|+|.+|+|||||++.+.+
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHh
Confidence 46889999999999999998866
No 329
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.91 E-value=0.016 Score=45.27 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcC
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
...|+|+|.+|+||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999988653
No 330
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.90 E-value=0.013 Score=51.24 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcCC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDE 107 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~ 107 (268)
-++|+|++|+|||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999987743
No 331
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.89 E-value=0.016 Score=50.77 Aligned_cols=24 Identities=38% Similarity=0.564 Sum_probs=20.8
Q ss_pred CceeEEEEEEcCCCChHHHHHHHH
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKY 103 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l 103 (268)
.....||+|+|.+|+|||||++++
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHH
Confidence 344699999999999999999886
No 332
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.88 E-value=0.014 Score=49.54 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999998764
No 333
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.88 E-value=0.015 Score=44.38 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
+|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998865
No 334
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.86 E-value=0.016 Score=46.60 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..|+|+|.+|+||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998854
No 335
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.86 E-value=0.021 Score=45.36 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcC
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
...|+|+|.+|+|||||.+.+.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999998764
No 336
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.85 E-value=0.018 Score=47.31 Aligned_cols=23 Identities=17% Similarity=0.034 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.++|+|+|.+|+||||+.++|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999864
No 337
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.84 E-value=0.015 Score=50.84 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-++|+|++|+|||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998774
No 338
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.80 E-value=0.014 Score=48.04 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.4
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 041042 86 ISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~ 106 (268)
++++|++|+|||+|++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998764
No 339
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.78 E-value=0.0093 Score=45.28 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998764
No 340
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.75 E-value=0.016 Score=50.72 Aligned_cols=22 Identities=36% Similarity=0.406 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4789999999999999998774
No 341
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.75 E-value=0.016 Score=50.72 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4789999999999999998774
No 342
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.75 E-value=0.022 Score=45.18 Aligned_cols=23 Identities=22% Similarity=0.079 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
...|+|.|.+|+||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 36799999999999999998864
No 343
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.72 E-value=0.017 Score=50.96 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcCC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDE 107 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~ 107 (268)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999987743
No 344
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.71 E-value=0.015 Score=48.88 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=19.4
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 041042 86 ISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~ 106 (268)
++++|++|+|||+|++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999998763
No 345
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.71 E-value=0.016 Score=44.84 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
+|+|+|.+|+||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 346
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.67 E-value=0.017 Score=46.68 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..|+|+|.+|+||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 347
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.67 E-value=0.018 Score=44.63 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..|+++|.+|+||||+.+.+..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999998863
No 348
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.67 E-value=0.018 Score=46.35 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.+.|+|+|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998854
No 349
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.66 E-value=0.017 Score=50.77 Aligned_cols=22 Identities=36% Similarity=0.387 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-++|+|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 4789999999999999998774
No 350
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.65 E-value=0.018 Score=50.67 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-++++|++|+|||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4789999999999999998774
No 351
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.64 E-value=0.029 Score=44.35 Aligned_cols=22 Identities=36% Similarity=0.301 Sum_probs=19.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..|+|.|.+|+||||+.+.|..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988864
No 352
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.63 E-value=0.019 Score=46.42 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 353
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.62 E-value=0.018 Score=50.41 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-+.|+|++|+|||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 4679999999999999988764
No 354
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.61 E-value=0.015 Score=50.70 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-++++|++|+|||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 5789999999999999998774
No 355
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.60 E-value=0.02 Score=44.48 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
-+.++|.+|+|||||+.++..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999875
No 356
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.57 E-value=0.021 Score=45.04 Aligned_cols=23 Identities=22% Similarity=0.092 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
..|+|.|.+|+||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999998654
No 357
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.56 E-value=0.017 Score=49.38 Aligned_cols=90 Identities=9% Similarity=0.117 Sum_probs=48.5
Q ss_pred EEEEeCCCcccccc-----c-------hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCC
Q 041042 134 YSIWEVTGDAKAQD-----H-------LPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFI 201 (268)
Q Consensus 134 l~i~Dt~G~~~~~~-----~-------~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~ 201 (268)
+.+.||+|...... + .+......+.++++.|.+..... ...+..+.+. ...-+|+.||.|..
T Consensus 187 ~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~---~~~~~~~~~~--~~~t~iivTh~d~~- 260 (304)
T 1rj9_A 187 LLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG---LEQAKKFHEA--VGLTGVIVTKLDGT- 260 (304)
T ss_dssp EEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH---HHHHHHHHHH--HCCSEEEEECTTSS-
T ss_pred EEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHH---HHHHHHHHHH--cCCcEEEEECCccc-
Confidence 56889999532211 1 11223456778889997655432 2222222221 12457899999841
Q ss_pred CCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 202 QLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
.. -..+.......+.+...+. +|+++++
T Consensus 261 -----a~---gg~~l~i~~~~~~pi~~ig--~Ge~~~d 288 (304)
T 1rj9_A 261 -----AK---GGVLIPIVRTLKVPIKFVG--VGEGPDD 288 (304)
T ss_dssp -----CC---CTTHHHHHHHHCCCEEEEE--CSSSTTC
T ss_pred -----cc---ccHHHHHHHHHCCCeEEEe--CCCChhh
Confidence 11 1223456677888877765 4444443
No 358
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.54 E-value=0.018 Score=46.30 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-++|+|++|+|||||++.+.+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998753
No 359
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.53 E-value=0.025 Score=44.15 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..-|+++|.+|+||||+.+.+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998854
No 360
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.53 E-value=0.022 Score=46.78 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
...|.|+|..|+|||||++.+.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 361
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.44 E-value=0.023 Score=44.34 Aligned_cols=21 Identities=29% Similarity=0.178 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 362
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.43 E-value=0.023 Score=47.97 Aligned_cols=22 Identities=27% Similarity=0.164 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.-|+|.|.+|+||||+.+++..
T Consensus 34 ~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 363
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.42 E-value=0.016 Score=44.63 Aligned_cols=23 Identities=35% Similarity=0.379 Sum_probs=19.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-.+++.|++|+|||+|++.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999999988653
No 364
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.41 E-value=0.019 Score=48.94 Aligned_cols=22 Identities=32% Similarity=0.250 Sum_probs=19.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
--++++|.+|+||||+++.+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4788999999999999998864
No 365
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.39 E-value=0.026 Score=45.67 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=19.0
Q ss_pred eeEEE-EEEcCCCChHHHHHHHHhc
Q 041042 82 VALKI-SLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 82 ~~~ki-~vlG~~~vGKSsLi~~l~~ 105 (268)
...|| +|+|.||+||+|...++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34454 5789999999999988864
No 366
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.39 E-value=0.026 Score=47.76 Aligned_cols=23 Identities=22% Similarity=0.060 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
...|.|.|.+|+|||||++.+..
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999987643
No 367
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.38 E-value=0.03 Score=43.53 Aligned_cols=22 Identities=23% Similarity=0.160 Sum_probs=19.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..|+|.|.+|+||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 368
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.38 E-value=0.0098 Score=47.41 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
-|+|.|.+|+||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999864
No 369
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=94.37 E-value=0.17 Score=41.16 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=20.4
Q ss_pred eEEEEEE--cCCCChHHHHHHHHhcC
Q 041042 83 ALKISLL--GDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 83 ~~ki~vl--G~~~vGKSsLi~~l~~~ 106 (268)
+-||+|+ |.+++|||.|++++.+.
T Consensus 27 ~nkilvl~~~~~~~~~~~~~~~lf~~ 52 (233)
T 3uc9_A 27 QNKILVLSDHPHNFLKTQFLQDLFHC 52 (233)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred CCceEEEecCcccccHHHHHHHHhcc
Confidence 4577777 89999999999999876
No 370
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.35 E-value=0.016 Score=44.96 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=15.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..|+|.|.+|+||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999854
No 371
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.35 E-value=0.02 Score=47.83 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.4
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 041042 86 ISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~ 106 (268)
++++|++|+|||+|++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999998764
No 372
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.34 E-value=0.019 Score=50.09 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.++|+|++|+|||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999998865
No 373
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.34 E-value=0.025 Score=44.31 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
-|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999865
No 374
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.32 E-value=0.021 Score=45.99 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-.+++.|++|+|||+|++.+...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988653
No 375
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.32 E-value=0.028 Score=44.64 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
...|.|+|.+|+|||||++.+.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998864
No 376
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.31 E-value=0.021 Score=47.23 Aligned_cols=21 Identities=19% Similarity=0.147 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
-|+|+|.+|+|||||.+.+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998854
No 377
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.29 E-value=0.023 Score=44.41 Aligned_cols=22 Identities=32% Similarity=0.224 Sum_probs=19.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..|+|+|.+|+||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 378
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.29 E-value=0.029 Score=44.11 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcC
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
...|+|.|.+|+||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 468999999999999999998764
No 379
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.27 E-value=0.022 Score=50.36 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|++|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5789999999999999998763
No 380
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.25 E-value=0.015 Score=50.76 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-++++|++|+|||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998774
No 381
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.24 E-value=0.026 Score=44.87 Aligned_cols=22 Identities=32% Similarity=0.237 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..|+|.|.+|+||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 382
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.24 E-value=0.025 Score=43.29 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 383
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.24 E-value=0.022 Score=49.81 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-.++|+|.+|+|||||++.+.+-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999999774
No 384
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.23 E-value=0.021 Score=49.19 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999998764
No 385
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.22 E-value=0.024 Score=45.65 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=19.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..|+|+|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 386
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.20 E-value=0.026 Score=46.87 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.-|+++|.+|+||||+.+.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 387
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.19 E-value=0.022 Score=49.21 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|.+|+|||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998764
No 388
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.18 E-value=0.028 Score=44.09 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=19.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..|+|.|.+|+||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988854
No 389
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.15 E-value=0.024 Score=44.73 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
--+++.|++|+|||+|++.+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988654
No 390
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.13 E-value=0.022 Score=48.06 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-++|+|.+|+|||||++.+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5889999999999999998764
No 391
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.11 E-value=0.027 Score=43.65 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=18.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
-.+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999754
No 392
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.10 E-value=0.03 Score=47.77 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
...|.|+|.+|+|||||++.+.+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998866
No 393
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.08 E-value=0.025 Score=46.58 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++++|++|+|||+|++.+.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4999999999999999998653
No 394
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.06 E-value=0.032 Score=46.05 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=19.6
Q ss_pred EEEEEEcCCCChHHHHHHHHh
Q 041042 84 LKISLLGDCHIGKTSFLEKYV 104 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~ 104 (268)
..|+|+|.+|+||||+++.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999987
No 395
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.05 E-value=0.032 Score=45.34 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..|+++|.+|+||||+.+.|..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998854
No 396
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.05 E-value=0.026 Score=44.98 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
-++++|.+|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 397
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.03 E-value=0.024 Score=49.78 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
=.++|+|.+|+|||||++.+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999876
No 398
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.02 E-value=0.029 Score=43.57 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.|+|+|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988754
No 399
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.01 E-value=0.034 Score=43.00 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=19.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..|+++|.+|+||||+.+.+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998865
No 400
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.99 E-value=0.027 Score=45.61 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5889999999999999999874
No 401
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.98 E-value=0.027 Score=45.06 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
-++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998865
No 402
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.97 E-value=0.037 Score=47.60 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.+-|.|+|.+|+|||||++.+.+
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 47799999999999999988754
No 403
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.96 E-value=0.027 Score=48.98 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDE 107 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~ 107 (268)
++.|+|.+|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998763
No 404
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.93 E-value=0.026 Score=46.63 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..|+++|.+|+||||+.+.+..
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998854
No 405
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.90 E-value=0.032 Score=45.32 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcC
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
..-|+|.|..|+|||||++.+.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 467999999999999999988764
No 406
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.79 E-value=0.039 Score=45.41 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=20.9
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhc
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..+.|.|.|.+|+||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998855
No 407
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.79 E-value=0.035 Score=41.54 Aligned_cols=23 Identities=13% Similarity=0.031 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
..|++.|++|+|||++.+.+...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999988664
No 408
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.77 E-value=0.03 Score=48.93 Aligned_cols=22 Identities=32% Similarity=0.250 Sum_probs=19.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
--++++|.+|+||||+++.+.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 4788999999999999998864
No 409
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.73 E-value=0.03 Score=50.93 Aligned_cols=91 Identities=10% Similarity=0.125 Sum_probs=49.2
Q ss_pred EEEEEeCCCcccccc-c---hhhh---h-----cCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhCCCCceEEEEeCCCC
Q 041042 133 SYSIWEVTGDAKAQD-H---LPVA---C-----KDSIAILFMFDLTSR-CTLKSVIRWYQQARKCNQTAIPIIIGTKFDD 199 (268)
Q Consensus 133 ~l~i~Dt~G~~~~~~-~---~~~~---~-----~~a~~vilv~D~~~~-~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl 199 (268)
.+.+.||+|...... + .... . ...+-++||.|.+.. +.++. ...+... -.+..+|.||.|-
T Consensus 377 DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~----ak~f~~~--~~itgvIlTKLD~ 450 (503)
T 2yhs_A 377 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ----AKLFHEA--VGLTGITLTKLDG 450 (503)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH----HHHHHHH--TCCSEEEEECGGG
T ss_pred CEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHH----HHHHHhh--cCCCEEEEEcCCC
Confidence 467899999643211 1 0111 1 125678899997643 22322 2222221 1234689999993
Q ss_pred CCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHHH
Q 041042 200 FIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKI 240 (268)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 240 (268)
. ..-..+..++..++.++.++ -+|++++++
T Consensus 451 ------t---akgG~~lsi~~~~~~PI~fi--g~Ge~vdDL 480 (503)
T 2yhs_A 451 ------T---AKGGVIFSVADQFGIPIRYI--GVGERIEDL 480 (503)
T ss_dssp ------C---SCCTHHHHHHHHHCCCEEEE--ECSSSGGGE
T ss_pred ------c---ccccHHHHHHHHHCCCEEEE--ecCCChhhc
Confidence 1 11234556677788887774 355666554
No 410
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.69 E-value=0.043 Score=43.89 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
+.|+|.|.+|+||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999865
No 411
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.68 E-value=0.033 Score=44.44 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=19.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.-|+++|.+|+||||+.+.+..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998754
No 412
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.58 E-value=0.033 Score=49.74 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-++|+|.+|+|||||++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998764
No 413
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.57 E-value=0.036 Score=45.15 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcC
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
..-|++.|.+|+||||+++.+...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999988653
No 414
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.55 E-value=0.031 Score=50.52 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|..|+|||||++.+.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 7999999999999999998763
No 415
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.54 E-value=0.024 Score=48.61 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-++|+|..|+|||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 3679999999999999999865
No 416
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.49 E-value=0.043 Score=41.94 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.|+|.|.+|+||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998854
No 417
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.45 E-value=0.036 Score=46.21 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.+++.|++|+|||+|++.+...
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5999999999999999998654
No 418
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.43 E-value=0.039 Score=45.28 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
-+++.|++|+|||+|++.+..
T Consensus 41 ~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 419
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.40 E-value=0.037 Score=50.70 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|.+|+|||||++.+.+-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4999999999999999998764
No 420
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.40 E-value=0.038 Score=49.63 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDE 107 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~ 107 (268)
++.|+|.+|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 78999999999999999987753
No 421
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=93.36 E-value=0.05 Score=48.23 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.7
Q ss_pred CceeEEEEEEcCCCChHHHHHHHH
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKY 103 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l 103 (268)
....+|++++|...+||||+++++
T Consensus 37 ~~~~~klLLLG~geSGKSTi~KQm 60 (402)
T 1azs_C 37 YRATHRLLLLGAGESGKSTIVKQM 60 (402)
T ss_dssp CTTEEEEEEEESTTSSHHHHHHHH
T ss_pred hhccceEEEecCCCCchhhHHHHH
Confidence 456799999999999999999986
No 422
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.36 E-value=0.04 Score=45.62 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=19.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
-.|+|+|.+|+||||+.+.+.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
No 423
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.33 E-value=0.039 Score=46.39 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
--+++.|++|+|||+|++.+.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 36899999999999999998763
No 424
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.27 E-value=0.049 Score=44.59 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.+.|+|.|.+|+||||+.+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998853
No 425
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.21 E-value=0.05 Score=50.20 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
=.++++|..|+|||||++.+.+-
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999875
No 426
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=93.21 E-value=0.67 Score=37.24 Aligned_cols=86 Identities=9% Similarity=0.022 Sum_probs=58.4
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceE-EEEeCCCCCCCCCccchhc
Q 041042 132 ISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPI-IIGTKFDDFIQLPIDLQWT 210 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~i-lvgnK~Dl~~~~~~~~~~~ 210 (268)
+.+.++|+++.-. ......+..+|.+|++...+ ..++..+...++.+...+.....+ +|.|+.|-. ...
T Consensus 119 yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~-------~~~ 188 (245)
T 3ea0_A 119 YDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN-------SRI 188 (245)
T ss_dssp CSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC-------TTS
T ss_pred CCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC-------CCC
Confidence 5578999987542 34455677899999999864 777888888888887765444444 999999941 111
Q ss_pred hHHHHHHHHHHhCCeEEEEc
Q 041042 211 IASQARAYAKALNATLFFSS 230 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~S 230 (268)
.. +.+.+.++.+++.+-
T Consensus 189 ~~---~~~~~~~~~~v~~~i 205 (245)
T 3ea0_A 189 TS---DEIEKVIGRPISKRI 205 (245)
T ss_dssp CH---HHHHHHHTSCEEEEE
T ss_pred CH---HHHHHHhCCCeEEEC
Confidence 12 344556787776643
No 427
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.20 E-value=0.048 Score=45.93 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.-|+++|.+|+||||+.+++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999875
No 428
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.17 E-value=0.18 Score=39.56 Aligned_cols=84 Identities=10% Similarity=-0.010 Sum_probs=53.5
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC---CCCceEEEEeCCCCCCCCCccch
Q 041042 132 ISYSIWEVTGDAKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCN---QTAIPIIIGTKFDDFIQLPIDLQ 208 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~---~~~~~ilvgnK~Dl~~~~~~~~~ 208 (268)
+.+.++|+++.. .......+..+|.+|++...+... ..+...++.+.... +..+..+|.|+.|. ..
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~-------~~ 144 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIE-------MA 144 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCT-------TE
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCC-------Cc
Confidence 567899999865 334455667799999999876444 66677677766543 22233599999993 11
Q ss_pred hchHHHHHHHHHHhCCeEE
Q 041042 209 WTIASQARAYAKALNATLF 227 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~ 227 (268)
. ...+..++.+.++.+++
T Consensus 145 ~-~~~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 145 T-MLNVLKESIKDTGVKAF 162 (206)
T ss_dssp E-EEHHHHHHHHHHTCCBC
T ss_pred h-HHHHHHHHHHHcCCcee
Confidence 1 22344555556666554
No 429
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.11 E-value=0.043 Score=46.80 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-+++.|++|+|||+|++.+.+.
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5889999999999999988653
No 430
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.10 E-value=0.042 Score=47.55 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-++|.|.+|+|||+|++.+.+.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998763
No 431
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.06 E-value=0.058 Score=40.73 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=17.0
Q ss_pred EEEEcCCCChHHHHHHHHh
Q 041042 86 ISLLGDCHIGKTSFLEKYV 104 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~ 104 (268)
.+|+|+.|+|||||+..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999999864
No 432
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.03 E-value=0.044 Score=45.80 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
-++|+|.+|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999875
No 433
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.02 E-value=0.045 Score=46.28 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=19.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.-+++.|+||+|||+|++.+...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35777899999999999988653
No 434
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.01 E-value=0.049 Score=50.71 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
+++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6889999999999999988663
No 435
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.95 E-value=0.053 Score=43.91 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=18.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
-++|+|++|+|||+|+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999887754
No 436
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.91 E-value=0.049 Score=46.15 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-|++.|++|+|||+|++.+.+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 5899999999999999998764
No 437
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.90 E-value=0.062 Score=45.11 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHh
Q 041042 83 ALKISLLGDCHIGKTSFLEKYV 104 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~ 104 (268)
.+.|+|.|.+|+||||+.+.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999986
No 438
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.90 E-value=0.056 Score=50.31 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
+++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999998764
No 439
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.89 E-value=0.057 Score=43.90 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=21.4
Q ss_pred CceeEEEEEEcCCCChHHHHHHHHhc
Q 041042 80 NLVALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 80 ~~~~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
......|+|+|.+|+||||+.+.+..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 44456899999999999999998864
No 440
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.82 E-value=0.049 Score=45.91 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..+++.|++|+|||+|++.+..
T Consensus 68 ~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999986644
No 441
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.78 E-value=0.054 Score=45.50 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.+++.|++|+|||+|++.+..
T Consensus 52 ~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 442
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.78 E-value=0.052 Score=49.29 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
-++|+|++|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999998865
No 443
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=92.74 E-value=0.054 Score=46.19 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-++|.|.+|+|||+|++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5889999999999999998754
No 444
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.73 E-value=0.053 Score=47.67 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=19.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
--++++|.+|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3789999999999999998875
No 445
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.70 E-value=0.08 Score=41.87 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.2
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhc
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..+.|.|.|.+|+||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998865
No 446
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.66 E-value=0.056 Score=46.95 Aligned_cols=22 Identities=36% Similarity=0.333 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-++|.|++|+|||+|++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 447
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.61 E-value=0.059 Score=44.74 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcC
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.-.+++.|++|+|||+|++.+...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999998664
No 448
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.55 E-value=0.061 Score=49.60 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-+.++|+.|+|||||++.+.+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999998774
No 449
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.51 E-value=0.07 Score=42.59 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcC
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
...|+|+|.+|+|||+|...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999765
No 450
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.49 E-value=0.056 Score=46.17 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-++|.|.+|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 6889999999999999998653
No 451
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.39 E-value=0.06 Score=45.66 Aligned_cols=90 Identities=12% Similarity=0.061 Sum_probs=49.2
Q ss_pred EEEEEEeCCCcccccc--ch--hhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCc
Q 041042 132 ISYSIWEVTGDAKAQD--HL--PVACK--DSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPI 205 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~--~~--~~~~~--~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~ 205 (268)
..+.|.||+|...... +. ...+. ..+.+++|+|.+.. .+.+..+.+.+. .-..--+|.||.|..
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~~~giVltk~D~~----- 252 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVPVNQYIFTKIDET----- 252 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSCCCEEEEECTTTC-----
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCCCCEEEEeCCCcc-----
Confidence 4588999999654321 11 11222 36788899987632 334444433321 111223778999941
Q ss_pred cchhchHHHHHHHHHHhCCeEEEEcCCCCcCH
Q 041042 206 DLQWTIASQARAYAKALNATLFFSSATYNINV 237 (268)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 237 (268)
. ....+...+...++++..++ +|+++
T Consensus 253 --~--~~g~~~~~~~~~~~pi~~i~--~ge~v 278 (296)
T 2px0_A 253 --T--SLGSVFNILAESKIGVGFMT--NGQNV 278 (296)
T ss_dssp --S--CCHHHHHHHHTCSCCCSEEC--CSSCT
T ss_pred --c--chhHHHHHHHHHCcCEEEEE--CCCCC
Confidence 1 12355667778888876654 34444
No 452
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.39 E-value=0.75 Score=36.43 Aligned_cols=85 Identities=11% Similarity=0.049 Sum_probs=54.4
Q ss_pred EEEEEEeCCCc-cccccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCccchhc
Q 041042 132 ISYSIWEVTGD-AKAQDHLPVACKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDDFIQLPIDLQWT 210 (268)
Q Consensus 132 ~~l~i~Dt~G~-~~~~~~~~~~~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~ 210 (268)
+.+.++|+++. .. ......+..+|.+|++...+ ..++..+...++.+.... +.+..+|.|+.|- ....
T Consensus 68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~~-------~~~~ 136 (209)
T 3cwq_A 68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG-NNRFRILLTIIPP-------YPSK 136 (209)
T ss_dssp CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC-SSSEEEEECSBCC-------TTSC
T ss_pred CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc-CCCEEEEEEecCC-------ccch
Confidence 55789999886 33 34455677899999999864 567777777777776643 2334599999994 1101
Q ss_pred hHHHHHHHHHHhCCeEE
Q 041042 211 IASQARAYAKALNATLF 227 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~ 227 (268)
...+..+..++++.+++
T Consensus 137 ~~~~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 137 DGDEARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHHHHHTTCCBC
T ss_pred HHHHHHHHHHHcCCchh
Confidence 23344455555665544
No 453
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.37 E-value=0.07 Score=49.95 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.+.|+|+.|+|||||++.+.+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999998874
No 454
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.32 E-value=0.23 Score=42.12 Aligned_cols=21 Identities=24% Similarity=0.137 Sum_probs=16.5
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 041042 86 ISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~ 106 (268)
+++-|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 445566999999999998653
No 455
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.26 E-value=0.068 Score=45.04 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
--+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999999988653
No 456
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.18 E-value=0.058 Score=44.61 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 041042 83 ALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
...|+|.|..|+||||+++.|..
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988754
No 457
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.18 E-value=0.054 Score=43.47 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=18.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.+++.|+||+|||+++..+.+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999887755
No 458
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.15 E-value=0.052 Score=50.67 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
+++++|++|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999988664
No 459
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.13 E-value=0.08 Score=49.57 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.+.|+|..|+|||||++.+.+-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 6899999999999999998774
No 460
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=92.10 E-value=0.08 Score=46.26 Aligned_cols=19 Identities=26% Similarity=0.322 Sum_probs=17.2
Q ss_pred EEEEcCCCChHHHHHHHHh
Q 041042 86 ISLLGDCHIGKTSFLEKYV 104 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~ 104 (268)
.+|+|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999999875
No 461
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.08 E-value=0.071 Score=45.68 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-|++.|++|+|||+|++.+...
T Consensus 47 ~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHH
Confidence 6899999999999999998764
No 462
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.07 E-value=0.087 Score=48.56 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcCC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDE 107 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~ 107 (268)
.+.|+|..|+|||||++.+.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 463
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.04 E-value=0.064 Score=46.44 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
--++|.|++|+|||+|++.+...
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988653
No 464
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.00 E-value=0.059 Score=50.35 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
+++++|++|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 7899999999999999988653
No 465
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.00 E-value=0.078 Score=48.87 Aligned_cols=22 Identities=45% Similarity=0.703 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.++|+|..|+|||||++.+.+-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998774
No 466
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.00 E-value=0.078 Score=45.21 Aligned_cols=92 Identities=15% Similarity=0.173 Sum_probs=50.3
Q ss_pred EEEEEEeCCCcccccc-ch------hhh-----hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCceEEEEeCCCC
Q 041042 132 ISYSIWEVTGDAKAQD-HL------PVA-----CKDSIAILFMFDLTSRCTLKSVIRWYQQARKCNQTAIPIIIGTKFDD 199 (268)
Q Consensus 132 ~~l~i~Dt~G~~~~~~-~~------~~~-----~~~a~~vilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~Dl 199 (268)
..+.+.||+|...... +. ... -...+.+++|.|.+.. .+.+.. ...+.+. -.+.-+|.||.|-
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~--~~i~gvVlTk~D~ 261 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEA--VNVTGIILTKLDG 261 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHH--SCCCEEEEECGGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhc--CCCCEEEEeCCCC
Confidence 3478999999532211 10 011 1247889999998632 222221 2222221 2233488899993
Q ss_pred CCCCCccchhchHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Q 041042 200 FIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNK 239 (268)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 239 (268)
. ..-..+..+....+.|+.+++. |+.+++
T Consensus 262 ~---------~~gG~~l~~~~~~~~Pi~~i~~--Ge~~~d 290 (306)
T 1vma_A 262 T---------AKGGITLAIARELGIPIKFIGV--GEKAED 290 (306)
T ss_dssp C---------SCTTHHHHHHHHHCCCEEEEEC--SSSGGG
T ss_pred c---------cchHHHHHHHHHHCCCEEEEeC--CCChhh
Confidence 1 1123367788888998877754 444444
No 467
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.96 E-value=0.075 Score=45.70 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=19.2
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 041042 86 ISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~ 106 (268)
+++.|++|+||||+++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998764
No 468
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.94 E-value=0.077 Score=45.50 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 041042 86 ISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~ 106 (268)
+++.|++|+|||++++.+.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988654
No 469
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.94 E-value=0.082 Score=41.60 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.|.|.|.+|+||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998854
No 470
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.92 E-value=0.054 Score=50.39 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.++++|++|+|||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 688999999999999987755
No 471
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.89 E-value=0.24 Score=43.99 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.-|+++|.+|+||||+.+++..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999865
No 472
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.88 E-value=0.077 Score=45.33 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-.|++.|++|+|||+|++.+...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999998653
No 473
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.82 E-value=0.094 Score=43.25 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.-|++.|++|+|||+|++.+...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 35899999999999999998764
No 474
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.80 E-value=0.066 Score=49.89 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
+++++|++|+|||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 688999999999999998765
No 475
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=91.77 E-value=0.039 Score=45.59 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 041042 86 ISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~ 106 (268)
+++.|++|+|||+|++.+...
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999998653
No 476
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.77 E-value=0.098 Score=48.96 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGDE 107 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~~ 107 (268)
.++|+|..|+|||||++.+.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 477
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.74 E-value=0.078 Score=45.87 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
--+++.|++|+|||+|++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998653
No 478
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.73 E-value=0.079 Score=46.03 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
--+.|+|++|+|||||++.+...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999775
No 479
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.72 E-value=0.089 Score=45.00 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
.|++.|++|+|||+|++.+...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5899999999999999998553
No 480
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.66 E-value=0.13 Score=41.81 Aligned_cols=21 Identities=29% Similarity=0.203 Sum_probs=18.5
Q ss_pred eEEEEEEcCCCChHHHHHHHH
Q 041042 83 ALKISLLGDCHIGKTSFLEKY 103 (268)
Q Consensus 83 ~~ki~vlG~~~vGKSsLi~~l 103 (268)
.+||++.|.+|||||++.-.+
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~l 26 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQA 26 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHH
Confidence 589999999999999996554
No 481
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.60 E-value=0.089 Score=44.81 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
-.+++.|++|+|||+|+..+..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988765
No 482
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.56 E-value=0.093 Score=46.90 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-|++.|+||+|||+|++.+.+.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998753
No 483
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.54 E-value=0.11 Score=44.88 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-|+|+|++|||||+|...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998753
No 484
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.54 E-value=0.1 Score=44.79 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..|+|+|.+|+|||||...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 485
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.53 E-value=0.086 Score=45.76 Aligned_cols=22 Identities=23% Similarity=0.160 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-++|.|++|+|||+|++.+...
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988653
No 486
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=91.47 E-value=0.077 Score=45.35 Aligned_cols=21 Identities=24% Similarity=0.142 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.+++.|++|+|||+|++.+..
T Consensus 48 ~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 689999999999999998865
No 487
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.35 E-value=0.12 Score=42.10 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=20.1
Q ss_pred eeEEEEEEcCCCChHHHHHHHHhc
Q 041042 82 VALKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 82 ~~~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..+++.|+|.+|+||||+..++..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 357999999999999999988854
No 488
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.32 E-value=0.1 Score=47.24 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-.++++|++|+|||+|++.+...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999987653
No 489
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.26 E-value=0.11 Score=48.61 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHhcCC
Q 041042 86 ISLLGDCHIGKTSFLEKYVGDE 107 (268)
Q Consensus 86 i~vlG~~~vGKSsLi~~l~~~~ 107 (268)
++|+|..|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6899999999999999998753
No 490
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.22 E-value=0.11 Score=44.84 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
.-|+|+|.+|||||||...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4588999999999999988764
No 491
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.19 E-value=0.1 Score=46.68 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
--|++.|+||+|||+|++.+.+.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999998764
No 492
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=91.19 E-value=0.098 Score=46.90 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
--+++.|++|+|||+|++.+.+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999988653
No 493
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.16 E-value=0.13 Score=40.96 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=17.1
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 041042 85 KISLLGDCHIGKTSFLEKYV 104 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~ 104 (268)
-.+|+|+.|+|||||+..+.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 35788999999999999863
No 494
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.15 E-value=0.1 Score=45.31 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-|++.|++|+|||+|++.+...
T Consensus 86 ~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999988654
No 495
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.14 E-value=0.12 Score=45.15 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
..+++.|++|+|||++++.+...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988653
No 496
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.11 E-value=0.11 Score=45.24 Aligned_cols=23 Identities=26% Similarity=0.167 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 041042 84 LKISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
--|++.|++|+|||+|++.+...
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998653
No 497
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.07 E-value=0.12 Score=44.13 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 041042 85 KISLLGDCHIGKTSFLEKYVGD 106 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~~ 106 (268)
-|+|+|++|||||+|...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999998653
No 498
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.02 E-value=0.15 Score=41.49 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=19.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 041042 84 LKISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 84 ~ki~vlG~~~vGKSsLi~~l~~ 105 (268)
..|++.|..|+||||+++.+..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999998865
No 499
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.99 E-value=0.11 Score=45.95 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=18.2
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 041042 85 KISLLGDCHIGKTSFLEKYV 104 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~ 104 (268)
-+.|+|++|+|||||+..+.
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 58899999999999999875
No 500
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.96 E-value=0.1 Score=48.07 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 041042 85 KISLLGDCHIGKTSFLEKYVG 105 (268)
Q Consensus 85 ki~vlG~~~vGKSsLi~~l~~ 105 (268)
-++++|++|+|||+|++.+.+
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
Done!