BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041044
(70 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2UFP8|BGLC_ASPOR Probable beta-glucosidase C OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=bglC PE=3 SV=2
Length = 638
Score = 35.8 bits (81), Expect = 0.075, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 25 YKDPKQPLHVRVNDLVSRMTLEEKIGQM 52
YKD + RV+DL++RMT+EEK GQ+
Sbjct: 46 YKDASYCIDERVDDLLARMTIEEKAGQL 73
>sp|Q5BCC6|BGLC_EMENI Beta-glucosidase C OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=bglC PE=1 SV=1
Length = 618
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 25 YKDPKQPLHVRVNDLVSRMTLEEKIGQM 52
YK+ + RV DL+SRMTLEEK GQ+
Sbjct: 38 YKNASYCVDERVRDLLSRMTLEEKAGQL 65
>sp|B8NGU6|BGLC_ASPFN Probable beta-glucosidase C OS=Aspergillus flavus (strain ATCC
200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)
GN=bglC PE=3 SV=1
Length = 634
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 25 YKDPKQPLHVRVNDLVSRMTLEEKIGQM 52
Y+D + RV+DL++RMT+EEK GQ+
Sbjct: 42 YRDASYCIDERVDDLLARMTIEEKAGQL 69
>sp|Q9FGY1|BXL1_ARATH Beta-D-xylosidase 1 OS=Arabidopsis thaliana GN=BXL1 PE=1 SV=1
Length = 774
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 23 LKYKDPKQPLHVRVNDLVSRMTLEEKI 49
L++ P+HVRV DL+ R+TL+EKI
Sbjct: 47 LRFCRANVPIHVRVQDLLGRLTLQEKI 73
>sp|Q9LXD6|BXL3_ARATH Beta-D-xylosidase 3 OS=Arabidopsis thaliana GN=BXL3 PE=1 SV=1
Length = 773
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 23 LKYKDPKQPLHVRVNDLVSRMTLEEKIGQMTQIERGVA 60
L++ + + RV DLV R+TLEEKIG +T GV+
Sbjct: 47 LRFCNAGLSIKARVTDLVGRLTLEEKIGFLTSKAIGVS 84
>sp|Q46684|BGLX_ERWCH Periplasmic beta-glucosidase/beta-xylosidase OS=Erwinia
chrysanthemi GN=bgxA PE=3 SV=1
Length = 654
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 5 LISLMGLLLLCCLAEAEYLKYKDPKQPLHVRVNDLVSRMTLEEKIGQM 52
LI++ GL + + Y+D + P R DLVSRMTL EK G M
Sbjct: 38 LITVNGLTFKDLNRDGKLNPYEDWRLPAAERAADLVSRMTLAEKAGVM 85
>sp|Q23892|GLUA_DICDI Lysosomal beta glucosidase OS=Dictyostelium discoideum GN=gluA PE=1
SV=2
Length = 821
Score = 32.7 bits (73), Expect = 0.69, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 20/21 (95%)
Query: 36 VNDLVSRMTLEEKIGQMTQIE 56
V++L+S+M++ EKIGQMTQ++
Sbjct: 80 VDNLMSKMSITEKIGQMTQLD 100
>sp|Q9SGZ5|BXL7_ARATH Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana GN=BXL7 PE=2
SV=2
Length = 767
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 31 PLHVRVNDLVSRMTLEEKIGQMTQIERGV 59
P+ R DLVSR+T++EKI Q+ G+
Sbjct: 44 PIGKRARDLVSRLTIDEKISQLVNTAPGI 72
>sp|Q9FLG1|BXL4_ARATH Beta-D-xylosidase 4 OS=Arabidopsis thaliana GN=BXL4 PE=1 SV=1
Length = 784
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 32 LHVRVNDLVSRMTLEEKIGQMTQIERGV 59
+ RV DLV+R+TL+EKIG + GV
Sbjct: 66 IEYRVADLVARLTLQEKIGFLVSKANGV 93
>sp|A5JTQ2|XYL1_MEDSV Beta-xylosidase/alpha-L-arabinofuranosidase 1 (Fragment)
OS=Medicago sativa subsp. varia GN=Xyl1 PE=1 SV=1
Length = 774
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 12/18 (66%), Positives = 16/18 (88%)
Query: 35 RVNDLVSRMTLEEKIGQM 52
RV+DLV R+TL+EKIG +
Sbjct: 64 RVSDLVKRLTLQEKIGNL 81
>sp|P40406|YBBD_BACSU Uncharacterized lipoprotein YbbD OS=Bacillus subtilis (strain
168) GN=ybbD PE=1 SV=1
Length = 642
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 8 LMGLLLLCCLAEAEYLKYKDPKQPLHVRVNDLVSRMTLEEKIGQM 52
L +L L C A + K+ + N +V+RM+L+EK+GQM
Sbjct: 9 LSAVLFLSCFFGARQTEASASKRA--IDANQIVNRMSLDEKLGQM 51
>sp|A5JTQ3|XYL2_MEDSV Beta-xylosidase/alpha-L-arabinofuranosidase 2 OS=Medicago sativa
subsp. varia GN=Xyl2 PE=2 SV=1
Length = 774
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 27 DPKQPLHVRVNDLVSRMTLEEKIGQM 52
+ K + RV DLV R+TL+EK+G +
Sbjct: 56 NKKLSVDARVKDLVRRLTLQEKVGNL 81
>sp|O93640|EF2_METTE Elongation factor 2 OS=Methanosarcina thermophila GN=fusA PE=3 SV=1
Length = 730
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 1 MARTLISLMGLLLLCCLAEAEYLKYKDPKQPLHVRVNDLVSRM---TLEEKIGQMTQIER 57
M +T IS + C +AE +K K PLH V D+V R LE + G++ I
Sbjct: 216 MQKTGISFTNVYDYC---KAEDMKALAEKCPLHATVLDMVIRFLPNPLEAQKGRVPTIWH 272
Query: 58 GVASAEVMK 66
G A++E+ K
Sbjct: 273 GDANSEIGK 281
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,610,728
Number of Sequences: 539616
Number of extensions: 625584
Number of successful extensions: 2491
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2479
Number of HSP's gapped (non-prelim): 14
length of query: 70
length of database: 191,569,459
effective HSP length: 42
effective length of query: 28
effective length of database: 168,905,587
effective search space: 4729356436
effective search space used: 4729356436
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)