Query 041044
Match_columns 70
No_of_seqs 117 out of 1083
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 04:47:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041044.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041044hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x38_A Beta-D-glucan exohydrol 98.9 1.7E-09 5.9E-14 83.4 4.5 47 24-70 4-50 (602)
2 3rrx_A EXO-1,3/1,4-beta-glucan 98.6 4.2E-08 1.5E-12 78.7 4.5 41 30-70 20-60 (822)
3 3bmx_A Uncharacterized lipopro 98.2 4.6E-07 1.6E-11 70.4 1.8 29 29-57 28-56 (642)
4 2x41_A Beta-glucosidase; hydro 96.4 0.0013 4.5E-08 51.6 2.0 21 34-54 2-22 (721)
5 3zyz_A Beta-D-glucoside glucoh 96.3 0.0019 6.6E-08 50.9 2.8 23 32-54 12-34 (713)
6 3abz_A Beta-glucosidase I; gly 96.1 0.0012 4.3E-08 52.9 0.7 21 34-54 4-24 (845)
7 3sql_A Glycosyl hydrolase fami 91.9 0.073 2.5E-06 41.0 2.2 17 41-57 13-29 (535)
8 1mfq_C SRP54, signal recogniti 73.1 2.7 9.4E-05 27.0 2.8 33 34-66 61-106 (129)
9 1qb2_A SRP54, human signal rec 72.5 3.5 0.00012 25.6 3.1 33 34-66 48-93 (109)
10 1dul_A Signal recognition part 63.9 5 0.00017 23.1 2.4 34 33-66 12-53 (69)
11 1hq1_A Signal recognition part 52.9 9.3 0.00032 23.5 2.4 19 32-50 45-63 (105)
12 2jqe_A SRP54, signal recogniti 51.9 9.8 0.00033 23.9 2.4 20 31-50 53-72 (119)
13 2jtx_A Transcription initiatio 49.1 8.3 0.00028 24.2 1.7 13 38-50 80-92 (106)
14 1w1n_A Phosphatidylinositol 3- 40.9 12 0.00042 18.4 1.3 26 29-54 2-27 (33)
15 3v2l_A AGAP005208-PA; odorant 36.4 17 0.00058 21.0 1.6 27 43-69 1-32 (120)
16 3tev_A Glycosyl hyrolase, fami 32.2 9 0.00031 27.7 -0.1 25 46-70 15-44 (351)
17 2rag_A Dipeptidase; aminohydro 27.4 17 0.00057 27.0 0.6 43 1-43 1-47 (417)
18 3anw_B GINS23, putative unchar 25.1 33 0.0011 22.8 1.7 13 37-49 143-155 (171)
19 1b0n_B Protein (SINI protein); 24.7 33 0.0011 18.9 1.4 22 47-68 14-35 (57)
20 2knc_B Integrin beta-3; transm 22.4 52 0.0018 19.0 2.0 13 6-18 21-33 (79)
21 2ffh_A Protein (FFH); SRP54, s 21.1 55 0.0019 24.0 2.4 18 33-50 359-376 (425)
22 1co7_I BPTI, bovine pancreatic 20.1 22 0.00075 21.1 0.0 16 1-16 2-17 (99)
No 1
>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A*
Probab=98.86 E-value=1.7e-09 Score=83.38 Aligned_cols=47 Identities=60% Similarity=0.875 Sum_probs=42.0
Q ss_pred CCCCCCCCHHHHHHHHHHhcCHHHHHhhhhccccCCCCHHHHhhccC
Q 041044 24 KYKDPKQPLHVRVNDLVSRMTLEEKIGQMTQIERGVASAEVMKKYFI 70 (70)
Q Consensus 24 ~~~d~~ls~~~Ra~~Lv~~MTleEKi~QL~~~~~~~~~p~~~~~y~~ 70 (70)
||+|+++++++|+++|+++||+|||++||+++.....+++.+++|++
T Consensus 4 ~~~d~~~~~~~rv~~ll~~MTleEKigQl~~~~~~~~~~~~i~~~~v 50 (602)
T 1x38_A 4 LYKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFI 50 (602)
T ss_dssp GGGCTTSCHHHHHHHHHTTCCHHHHHHHTEEEEGGGCCHHHHHHTTC
T ss_pred cccCCCCCHHHHHHHHHHcCCHHHHHhhhcccccccccHHHHHhcCC
Confidence 79999999999999999999999999999987766667788888774
No 2
>3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A
Probab=98.57 E-value=4.2e-08 Score=78.72 Aligned_cols=41 Identities=34% Similarity=0.563 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHhcCHHHHHhhhhccccCCCCHHHHhhccC
Q 041044 30 QPLHVRVNDLVSRMTLEEKIGQMTQIERGVASAEVMKKYFI 70 (70)
Q Consensus 30 ls~~~Ra~~Lv~~MTleEKi~QL~~~~~~~~~p~~~~~y~~ 70 (70)
.+.++||++|+++||+|||+|||++++....+++++++||+
T Consensus 20 ~~~~~rV~~ll~~MTLeEKiGQL~~~~~~~~~~~~i~~~~v 60 (822)
T 3rrx_A 20 PAVEAQIEKLLAKMTIEQKVAQMIQPEIGYLTVEQMRKYGF 60 (822)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHEECBTTTCCHHHHHHHCC
T ss_pred ccHHHHHHHHHHcCCHHHHHhCccccccCCCCHHHHHhCCC
Confidence 36899999999999999999999999888889999999985
No 3
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A*
Probab=98.18 E-value=4.6e-07 Score=70.43 Aligned_cols=29 Identities=34% Similarity=0.528 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHhcCHHHHHhhhhcccc
Q 041044 29 KQPLHVRVNDLVSRMTLEEKIGQMTQIER 57 (70)
Q Consensus 29 ~ls~~~Ra~~Lv~~MTleEKi~QL~~~~~ 57 (70)
+.+.++|+++|+++||+|||+|||+++..
T Consensus 28 ~~~~~~rv~~ll~~MTleEKiGQl~~~~~ 56 (642)
T 3bmx_A 28 ASKRAIDANQIVNRMSLDEKLGQMLMPDF 56 (642)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHTEECBC
T ss_pred cCCHHHHHHHHHHcCCHHHHHhCceeecc
Confidence 56789999999999999999999988654
No 4
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=96.35 E-value=0.0013 Score=51.63 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCHHHHHhhhhc
Q 041044 34 VRVNDLVSRMTLEEKIGQMTQ 54 (70)
Q Consensus 34 ~Ra~~Lv~~MTleEKi~QL~~ 54 (70)
+|+++|+++||+|||++||.+
T Consensus 2 ~r~~~ll~~mTleEK~~~l~g 22 (721)
T 2x41_A 2 EKVNEILSQLTLEEKVKLVVG 22 (721)
T ss_dssp CHHHHHHHHCCHHHHHHHTBC
T ss_pred hhHHHHHHcCCHHHHHHHhcC
Confidence 589999999999999999986
No 5
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A*
Probab=96.33 E-value=0.0019 Score=50.88 Aligned_cols=23 Identities=13% Similarity=0.381 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCHHHHHhhhhc
Q 041044 32 LHVRVNDLVSRMTLEEKIGQMTQ 54 (70)
Q Consensus 32 ~~~Ra~~Lv~~MTleEKi~QL~~ 54 (70)
+++|+++|+++||+|||++++.+
T Consensus 12 a~~ra~~l~~~lTl~EK~~l~~g 34 (713)
T 3zyz_A 12 AYDKAKAALAKLNLQDKVGIVSG 34 (713)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHBB
T ss_pred HHHHHHHHHHhCCHHHHHHHhcC
Confidence 78999999999999999999964
No 6
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=96.09 E-value=0.0012 Score=52.93 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.4
Q ss_pred HHHHHHHHhcCHHHHHhhhhc
Q 041044 34 VRVNDLVSRMTLEEKIGQMTQ 54 (70)
Q Consensus 34 ~Ra~~Lv~~MTleEKi~QL~~ 54 (70)
.|+++|+++||+|||++||.+
T Consensus 4 ~r~~~ll~~mTleEKi~~l~g 24 (845)
T 3abz_A 4 FDVEQLLSELNQDEKISLLSA 24 (845)
T ss_dssp CCHHHHHHHCCHHHHHHHTBC
T ss_pred HHHHHHHHcCCHHHHHHHhcC
Confidence 579999999999999999975
No 7
>3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM-barrel, alpha-beta-alpha sandwich; HET: MSE; 2.25A {Synechococcus SP} PDB: 3sqm_A*
Probab=91.90 E-value=0.073 Score=41.05 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=15.2
Q ss_pred HhcCHHHHHhhhhcccc
Q 041044 41 SRMTLEEKIGQMTQIER 57 (70)
Q Consensus 41 ~~MTleEKi~QL~~~~~ 57 (70)
++||+|||+|||+.+..
T Consensus 13 ~~MtLeeKiGQL~~v~~ 29 (535)
T 3sql_A 13 ESLSLRQAIAQMIVVRG 29 (535)
T ss_dssp GGSCHHHHHHHTEEEEE
T ss_pred CCCCHHHHhhCceEecc
Confidence 79999999999998654
No 8
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=73.15 E-value=2.7 Score=26.97 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCHHHHHh----hhh--cc------cc-CCCCHHHHh
Q 041044 34 VRVNDLVSRMTLEEKIG----QMT--QI------ER-GVASAEVMK 66 (70)
Q Consensus 34 ~Ra~~Lv~~MTleEKi~----QL~--~~------~~-~~~~p~~~~ 66 (70)
+|.++++..||.+|+-. .++ +. .+ .+.++++|.
T Consensus 61 kr~eaII~SMT~~Er~n~~~P~ii~~~~SRk~RIA~GSG~~v~eVn 106 (129)
T 1mfq_C 61 KKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQ 106 (129)
T ss_dssp HHHHHHHTTSCHHHHTCTTHHHHHHHCTHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHccCHHHHhcCCCcccccCChHHHHHHHccCCCCHHHHH
Confidence 67899999999999996 565 42 22 777888654
No 9
>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W
Probab=72.54 E-value=3.5 Score=25.60 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCHHHHHh----hhhc--ccc-------CCCCHHHHh
Q 041044 34 VRVNDLVSRMTLEEKIG----QMTQ--IER-------GVASAEVMK 66 (70)
Q Consensus 34 ~Ra~~Lv~~MTleEKi~----QL~~--~~~-------~~~~p~~~~ 66 (70)
.|.++++..||.+|+-. .+.. ..| .+.+++++.
T Consensus 48 kr~~aII~SMT~~Er~~~~~P~ii~~~~SR~~RIA~GSG~~v~eVn 93 (109)
T 1qb2_A 48 KKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQ 93 (109)
T ss_dssp HHHHHHHTTSCHHHHHSTTTHHHHHHSTHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHcCCHHHHhcCCCccccccchHHHHHHHccCCCCHHHHH
Confidence 67899999999999996 4544 212 777887654
No 10
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=63.90 E-value=5 Score=23.09 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCHHHHHhhhh-c------c-ccCCCCHHHHh
Q 041044 33 HVRVNDLVSRMTLEEKIGQMT-Q------I-ERGVASAEVMK 66 (70)
Q Consensus 33 ~~Ra~~Lv~~MTleEKi~QL~-~------~-~~~~~~p~~~~ 66 (70)
-.|...++..||.+|+-.-=. + + ...|.+++++.
T Consensus 12 lkr~~aII~SMT~~Er~nP~ii~~SR~~RIA~GSG~~v~eVn 53 (69)
T 1dul_A 12 LVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGSGMQVQDVN 53 (69)
T ss_dssp HHHHHHHHHTSCHHHHHCGGGCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHhCccccCHHHHHHHHccCCCCHHHHH
Confidence 468999999999999985221 1 1 22667777554
No 11
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=52.86 E-value=9.3 Score=23.51 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCHHHHHh
Q 041044 32 LHVRVNDLVSRMTLEEKIG 50 (70)
Q Consensus 32 ~~~Ra~~Lv~~MTleEKi~ 50 (70)
.-.|.++++..||.+|+-.
T Consensus 45 ~lkr~~aII~SMT~~Er~~ 63 (105)
T 1hq1_A 45 VLVRMEAIINSMTMKERAK 63 (105)
T ss_dssp SHHHHHHHHHTSCHHHHHC
T ss_pred HHHHHHHHHHcCCHHHhhC
Confidence 4578999999999999985
No 12
>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus}
Probab=51.90 E-value=9.8 Score=23.90 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHhcCHHHHHh
Q 041044 31 PLHVRVNDLVSRMTLEEKIG 50 (70)
Q Consensus 31 s~~~Ra~~Lv~~MTleEKi~ 50 (70)
..-.|.++++..||.+|+-.
T Consensus 53 ~~lkr~~aII~SMT~~Er~~ 72 (119)
T 2jqe_A 53 EKMKKFRVIMDSMTEEELLN 72 (119)
T ss_dssp CHHHHHHHHHHHSCHHHHHC
T ss_pred HHHHHHHHHHHhCCHHHHhC
Confidence 45689999999999999985
No 13
>2jtx_A Transcription initiation factor IIE subunit alpha; TFIIE, TFIIH, activation domains, transcription regulation; NMR {Homo sapiens} PDB: 2rnq_A 2rnr_A
Probab=49.14 E-value=8.3 Score=24.17 Aligned_cols=13 Identities=54% Similarity=0.652 Sum_probs=11.2
Q ss_pred HHHHhcCHHHHHh
Q 041044 38 DLVSRMTLEEKIG 50 (70)
Q Consensus 38 ~Lv~~MTleEKi~ 50 (70)
+|+++||.+||-.
T Consensus 80 ~lv~~MTp~EKEa 92 (106)
T 2jtx_A 80 ELVAQMTPEEKEA 92 (106)
T ss_dssp HHHHHSCHHHHHH
T ss_pred HHHHHcCHHHHHH
Confidence 4899999999964
No 14
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=40.87 E-value=12 Score=18.43 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHHhcCHHHHHhhhhc
Q 041044 29 KQPLHVRVNDLVSRMTLEEKIGQMTQ 54 (70)
Q Consensus 29 ~ls~~~Ra~~Lv~~MTleEKi~QL~~ 54 (70)
.+++++.++.|+.+=|-.|.+.||..
T Consensus 2 ~lsv~~QV~~LI~~At~~~NL~~my~ 27 (33)
T 1w1n_A 2 ELDVPEQVDKLIQQATSIERLCQHYI 27 (33)
T ss_dssp CSCSTHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHhcCHHHHHHHhh
Confidence 36788899999999999999998853
No 15
>3v2l_A AGAP005208-PA; odorant binding olfaction, general odorant binding protein, transport, secreted, odorant-binding protein; HET: PG4; 1.80A {Anopheles gambiae} PDB: 4f7f_A* 3vb1_A
Probab=36.36 E-value=17 Score=20.97 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=16.5
Q ss_pred cCHHHHHhhhhc-----cccCCCCHHHHhhcc
Q 041044 43 MTLEEKIGQMTQ-----IERGVASAEVMKKYF 69 (70)
Q Consensus 43 MTleEKi~QL~~-----~~~~~~~p~~~~~y~ 69 (70)
||.||....+-. ..-.+++++++.+|+
T Consensus 1 mT~eq~~~~~~~~~~~C~~e~gv~~e~i~~~~ 32 (120)
T 3v2l_A 1 MTVEQMMKSGEMIRSVCLGKTKVAEELVNGLR 32 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhhhhCcCHHHHHHHH
Confidence 666665443332 445788888777664
No 16
>3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans}
Probab=32.21 E-value=9 Score=27.73 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=16.3
Q ss_pred HHHHhhhhccccCC--CCHH---HHhhccC
Q 041044 46 EEKIGQMTQIERGV--ASAE---VMKKYFI 70 (70)
Q Consensus 46 eEKi~QL~~~~~~~--~~p~---~~~~y~~ 70 (70)
+||+|||+.++..+ ++++ .+++|++
T Consensus 15 ~~kiGQl~m~g~~g~~~~~~~~~~i~~~~v 44 (351)
T 3tev_A 15 PVRPGQLLMIDLPGPELDKDTAAYLREHGI 44 (351)
T ss_dssp CCCGGGGEEECCSSSSCCHHHHHHHHHHTC
T ss_pred hhhcccEEEEecCCCCCCHHHHHHHHcCCc
Confidence 57899998866544 3443 5666664
No 17
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target 9257A, protein structure initiative; 2.00A {Caulobacter crescentus}
Probab=27.45 E-value=17 Score=26.96 Aligned_cols=43 Identities=19% Similarity=0.157 Sum_probs=8.6
Q ss_pred ChHHHHHHHHHHHHHhhhhcccCC----CCCCCCCHHHHHHHHHHhc
Q 041044 1 MARTLISLMGLLLLCCLAEAEYLK----YKDPKQPLHVRVNDLVSRM 43 (70)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~----~~d~~ls~~~Ra~~Lv~~M 43 (70)
|+|.+++.++++.+...+.....+ -.....+..+|+++|.++|
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~ 47 (417)
T 2rag_A 1 MSRPLLFALTALSLTAASLAHAADKKAADKPAPSAVSKADKALHDKF 47 (417)
T ss_dssp ------------------------------------CHHHHHHHTTS
T ss_pred CchhHHHHHHHHHHHHHhhhccccccccCCCCcccHHHHHHHHHhCC
Confidence 788888887777666422111110 0111123457888888876
No 18
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=25.08 E-value=33 Score=22.76 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=11.2
Q ss_pred HHHHHhcCHHHHH
Q 041044 37 NDLVSRMTLEEKI 49 (70)
Q Consensus 37 ~~Lv~~MTleEKi 49 (70)
.+++++||.|||.
T Consensus 143 ~eil~rLTpEEk~ 155 (171)
T 3anw_B 143 LELLSRLAPEERR 155 (171)
T ss_dssp HHHHTTSCHHHHH
T ss_pred HHHHhcCCHHHHH
Confidence 4679999999996
No 19
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=24.71 E-value=33 Score=18.88 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=9.9
Q ss_pred HHHhhhhccccCCCCHHHHhhc
Q 041044 47 EKIGQMTQIERGVASAEVMKKY 68 (70)
Q Consensus 47 EKi~QL~~~~~~~~~p~~~~~y 68 (70)
|.+..+...-..|++.++|++|
T Consensus 14 ewl~LI~~Ak~lGlsleEIref 35 (57)
T 1b0n_B 14 EWVELMVEAKEANISPEEIRKY 35 (57)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHH
Confidence 3333333344445555555544
No 20
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.41 E-value=52 Score=18.97 Aligned_cols=13 Identities=38% Similarity=0.434 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhh
Q 041044 6 ISLMGLLLLCCLA 18 (70)
Q Consensus 6 ~~~~~~~~~~~~~ 18 (70)
++++||++++++.
T Consensus 21 illiGllllliwk 33 (79)
T 2knc_B 21 ILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4677888888765
No 21
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=21.10 E-value=55 Score=24.01 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCHHHHHh
Q 041044 33 HVRVNDLVSRMTLEEKIG 50 (70)
Q Consensus 33 ~~Ra~~Lv~~MTleEKi~ 50 (70)
-+|.++++..||.+|+-.
T Consensus 359 ~~~~~~i~~smt~~e~~~ 376 (425)
T 2ffh_A 359 IKRLEAIVLSMTPEERKD 376 (425)
T ss_dssp HHHHHHHHHTSCHHHHHC
T ss_pred HHHHHHHHHcCCHHHhcC
Confidence 478999999999999874
No 22
>1co7_I BPTI, bovine pancreatic trypsin inhibitor; complex (serine protease/inhibitor), hydrolase/hydrolase inhibitor complex; 1.90A {Bos taurus} SCOP: g.8.1.1
Probab=20.06 E-value=22 Score=21.11 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHh
Q 041044 1 MARTLISLMGLLLLCC 16 (70)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (70)
|+|+.++.+-++++.+
T Consensus 2 m~~~~ls~~lllll~~ 17 (99)
T 1co7_I 2 MSRLCLSVALLVLLGT 17 (99)
T ss_dssp ----------------
T ss_pred cchHHHHHHHHHHHHH
Confidence 7887777666666654
Done!