BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041046
         (243 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1PVY|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
           Jannaschii In Complex With Ribulose 5-Phosphate
 pdb|1PVY|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
           Jannaschii In Complex With Ribulose 5-Phosphate
 pdb|1SNN|A Chain A, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
           Methanococcus Jannaschii
 pdb|1SNN|B Chain B, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
           Methanococcus Jannaschii
          Length = 227

 Score = 36.2 bits (82), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 10/66 (15%)

Query: 174 KGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAG-------RKWAGEVYAEIRKSLYPDL 226
           K  EAL+ G +   YDS+E+  E  M +A Q          RK AG +   I  +L+PD+
Sbjct: 6   KAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGL---ICTALHPDI 62

Query: 227 CGVLGL 232
           C  LG+
Sbjct: 63  CNKLGI 68


>pdb|1PVW|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
           Jannaschii
 pdb|1PVW|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
           Jannaschii
 pdb|1PVW|C Chain C, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
           Jannaschii
          Length = 227

 Score = 36.2 bits (82), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 10/66 (15%)

Query: 174 KGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAG-------RKWAGEVYAEIRKSLYPDL 226
           K  EAL+ G +   YDS+E+  E  M +A Q          RK AG +   I  +L+PD+
Sbjct: 6   KAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGL---ICTALHPDI 62

Query: 227 CGVLGL 232
           C  LG+
Sbjct: 63  CNKLGI 68


>pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
           Halodurans
 pdb|3LKE|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
           Halodurans
 pdb|3LKE|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
           Halodurans
          Length = 263

 Score = 35.0 bits (79), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 75/195 (38%), Gaps = 11/195 (5%)

Query: 5   EKHGDVFVLTLTGSSDVDEHRFGPSAI--DSILSAIAKAKAEATPGSALITTSHGKFFSN 62
           E   D   +TL    D  E + G  A    S+L AI     E +  S ++ + H  +FS+
Sbjct: 9   EIQNDALYITL----DYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSS 64

Query: 63  GLDXXXXXXXXXXXXXXXXXXYMVESFRPVVAAMMDLPMPTXXXXXXXXXXXXFTLALSH 122
           G                     ++      V  +   P  T            F + L+ 
Sbjct: 65  G-PRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLAC 123

Query: 123 DYVI-MRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRM 181
           D  I +RR K +    ++ I    PD   + F  ++       ++LL  K    EEALR+
Sbjct: 124 DRRIALRRAKFLENFHKMGIS---PDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRL 180

Query: 182 GLVQAAYDSEEQVAE 196
           GL+Q   ++++++ E
Sbjct: 181 GLIQEICENKQELQE 195


>pdb|1WZ8|A Chain A, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
           Thermus Thermophilus Hb8
 pdb|1WZ8|B Chain B, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
           Thermus Thermophilus Hb8
 pdb|1WZ8|C Chain C, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
           Thermus Thermophilus Hb8
 pdb|1WZ8|D Chain D, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
           Thermus Thermophilus Hb8
 pdb|1WZ8|E Chain E, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
           Thermus Thermophilus Hb8
 pdb|1WZ8|F Chain F, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
           Thermus Thermophilus Hb8
          Length = 264

 Score = 33.5 bits (75), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 141 IGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMR 200
           +G    D+   L+   VG A A+  +LL  + + GEEA R+GLV  A + +E+V E ++ 
Sbjct: 144 LGVAAGDHAVLLWPLLVGMAKAKYHLLLN-EPLTGEEAERLGLVALAVE-DEKVYEKALE 201

Query: 201 LAKQMA 206
           +A+++A
Sbjct: 202 VAERLA 207


>pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase
           (Gk2873) From Geobacillus Kaustophilus Hta426
 pdb|2IEX|B Chain B, Crystal Structure Of Dihydroxynapthoic Acid Synthetase
           (Gk2873) From Geobacillus Kaustophilus Hta426
 pdb|2IEX|C Chain C, Crystal Structure Of Dihydroxynapthoic Acid Synthetase
           (Gk2873) From Geobacillus Kaustophilus Hta426
          Length = 272

 Score = 32.7 bits (73), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 40/203 (19%), Positives = 77/203 (37%), Gaps = 13/203 (6%)

Query: 9   DVFVLTLTGSSDVDEHR------FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSN 62
           D+   T  G + +  +R      F P  ++ ++ A  KA+ ++  G  ++T + GK F +
Sbjct: 13  DIIYETYNGIAKITINRPEVHNAFRPKTVNEMIDAFTKARDDSNIGVIILTGAGGKAFCS 72

Query: 63  GLDXXXXXXXXXXXXXXXXXXYMVESFRPVVAAMMDLPMPTXXXXXXXXXXXXFTLALSH 122
           G D                   +++  R +      +P P               L +  
Sbjct: 73  GGDQKVRGHGGYVGEDEIPRLNVLDLQRLIRV----IPKPVIAMVAGYAIGGGHVLHVVC 128

Query: 123 DYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMG 182
           D  I   D  +   +   +G+    Y        VG   A R++    ++   +EAL MG
Sbjct: 129 DLTIA-ADNAIFGQTGPKVGSFDGGYGAGYLARIVGHKKA-REIWYLCRQYTAQEALEMG 186

Query: 183 LVQAAYDSEEQVAEASMRLAKQM 205
           LV       EQ+ E +++ A+++
Sbjct: 187 LVNKVV-PLEQLEEETVKWAQEI 208


>pdb|3QK8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
           Mycobacterium Marinum In Complex With An Unknown Ligand
 pdb|3QK8|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
           Mycobacterium Marinum In Complex With An Unknown Ligand
 pdb|3QK8|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
           Mycobacterium Marinum In Complex With An Unknown Ligand
 pdb|3QK8|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
           Mycobacterium Marinum In Complex With An Unknown Ligand
 pdb|3QK8|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
           Mycobacterium Marinum In Complex With An Unknown Ligand
 pdb|3QK8|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
           Mycobacterium Marinum In Complex With An Unknown Ligand
          Length = 272

 Score = 32.3 bits (72), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 141 IGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMR 200
           +G    D+    +   VG A A+   LL  + + GEEA R+GLV    D +E +  A+ R
Sbjct: 147 LGVAAGDHAAICWPLLVGMAKAKY-YLLTCETLSGEEAERIGLVSTCVDDDEVLPTAT-R 204

Query: 201 LAKQMA 206
           LA+ +A
Sbjct: 205 LAENLA 210


>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
           Anthracis Str. 'ames Ancestor'
 pdb|3PEA|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
           Anthracis Str. 'ames Ancestor'
 pdb|3PEA|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
           Anthracis Str. 'ames Ancestor'
 pdb|3PEA|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
           Anthracis Str. 'ames Ancestor'
 pdb|3PEA|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
           Anthracis Str. 'ames Ancestor'
 pdb|3PEA|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
           Anthracis Str. 'ames Ancestor'
          Length = 261

 Score = 32.0 bits (71), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 157 VGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWA 211
           VG A A  +  L +  I G EAL+ GLV   + +EE   + ++++AKQ+AG+  A
Sbjct: 154 VGKAKAC-EXXLTSTPITGAEALKWGLVNGVF-AEETFLDDTLKVAKQIAGKSPA 206


>pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus
           Thermophilus Hb8
          Length = 253

 Score = 32.0 bits (71), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 65/166 (39%), Gaps = 7/166 (4%)

Query: 22  DEHRFGPSAIDSILSAI-AKAKAEATPG-SALITTSHGKFFSNGLDXXXXXXXXXXXXXX 79
           D  R  P + +  LS + A    EA PG  A++ T  GK FS G D              
Sbjct: 16  DPERRNPLSPEXALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEE 75

Query: 80  XXXXYMVESFRPVVAAMMDLPMPTXXXXXXXXXXXXFTLALSHDYVIMRRDKGVLYMSEV 139
                +  S   +   +   P PT              LAL+ D V+   +  + Y +EV
Sbjct: 76  NYRHSL--SLXRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVXDEEARLGY-TEV 132

Query: 140 DIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQ 185
            IG         L RA VG   A+ D+LL  + ++  EA  +GLV 
Sbjct: 133 KIGFVAALVSVILVRA-VGEKAAK-DLLLTGRLVEAREAKALGLVN 176


>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein
           Paag
 pdb|3HRX|B Chain B, Crystal Structure Of Phenylacetic Acid Degradation Protein
           Paag
 pdb|3HRX|C Chain C, Crystal Structure Of Phenylacetic Acid Degradation Protein
           Paag
 pdb|3HRX|D Chain D, Crystal Structure Of Phenylacetic Acid Degradation Protein
           Paag
 pdb|3HRX|E Chain E, Crystal Structure Of Phenylacetic Acid Degradation Protein
           Paag
 pdb|3HRX|F Chain F, Crystal Structure Of Phenylacetic Acid Degradation Protein
           Paag
          Length = 254

 Score = 30.8 bits (68), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 84/207 (40%), Gaps = 14/207 (6%)

Query: 1   MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
           M   E+   V VLTL     ++        +D++ +A+ K   E     AL+ T  G+ F
Sbjct: 1   MVLKERQDGVLVLTLNRPEKLNA--ITGELLDALYAAL-KEGEEDREVRALLLTGAGRAF 57

Query: 61  SNGLDXXXXXXXXXXXXXXXXXXYMVESFRPVVAAMMDLPMPTXXXXXXXXXXXXFTLAL 120
           S G D                    +  +  VV A+  L  P              +LAL
Sbjct: 58  SAGQDLTEFGDRKPDYEAH------LRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLAL 111

Query: 121 SHDYVIMRRDKGVLYMSE-VDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEAL 179
             D  +     G  + +  V IG       + L    VG A A+ ++LL + ++  EEAL
Sbjct: 112 WGDLRLA--AVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQ-ELLLLSPRLSAEEAL 168

Query: 180 RMGLVQAAYDSEEQVAEASMRLAKQMA 206
            +GLV     +E+ + EA + LAK++A
Sbjct: 169 ALGLVHRVVPAEKLMEEA-LSLAKELA 194


>pdb|4FQU|A Chain A, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
           Chlorophenolicum
 pdb|4FQU|B Chain B, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
           Chlorophenolicum
 pdb|4FQU|C Chain C, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
           Chlorophenolicum
 pdb|4FQU|D Chain D, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
           Chlorophenolicum
 pdb|4FQU|E Chain E, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
           Chlorophenolicum
 pdb|4FQU|F Chain F, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
           Chlorophenolicum
 pdb|4FQU|G Chain G, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
           Chlorophenolicum
 pdb|4FQU|H Chain H, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
           Chlorophenolicum
          Length = 313

 Score = 29.6 bits (65), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 20/97 (20%)

Query: 140 DIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASM 199
           D+GA   DY+ A FR ++    AR             E L  G+ ++ + + ++  E + 
Sbjct: 151 DVGALPGDYYPAEFRPEIDRINARV-----------YETLNNGVYRSGFATTQEAYEEAF 199

Query: 200 --------RLAKQMAGRKW-AGEVYAEIRKSLYPDLC 227
                    L + + GR+W  G+   E    L+P L 
Sbjct: 200 YPLFDTLDWLEEHLTGREWLVGDRLTEADIRLFPTLV 236


>pdb|2CW7|A Chain A, Crystal Structure Of Intein Homing Endonuclease Ii
          Length = 537

 Score = 29.6 bits (65), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 188 YDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKS----LYPDLCGVLGLDIR 235
           Y+ + +V +   RLA +  G+   G  Y EI K     L+ ++CGVL  + R
Sbjct: 308 YNEDPEVLDDMERLASRFFGKVRRGRNYVEIPKKIGYLLFENMCGVLAENKR 359


>pdb|2CW8|A Chain A, Crystal Structure Of Intein Homing Endonuclease Ii
          Length = 537

 Score = 28.9 bits (63), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 188 YDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKS----LYPDLCGVLGLDIR 235
           Y+ + +V +   RLA +  G+   G  Y EI K     L+ + CGVL  + R
Sbjct: 308 YNEDPEVLDDXERLASRFFGKVRRGRNYVEIPKKIGYLLFENXCGVLAENKR 359


>pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From
           Mycobacterium Marinum
          Length = 256

 Score = 28.9 bits (63), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEA 197
           +L+ ++ I  EEALRMGLV      EE + EA
Sbjct: 163 LLMSSEWIDAEEALRMGLVWRICSPEELLPEA 194


>pdb|1UM0|A Chain A, Crystal Structure Of Chorismate Synthase Complexed With
           Fmn
 pdb|1UM0|B Chain B, Crystal Structure Of Chorismate Synthase Complexed With
           Fmn
 pdb|1UM0|C Chain C, Crystal Structure Of Chorismate Synthase Complexed With
           Fmn
 pdb|1UM0|D Chain D, Crystal Structure Of Chorismate Synthase Complexed With
           Fmn
 pdb|1UMF|A Chain A, Crystal Structure Of Chorismate Synthase
 pdb|1UMF|B Chain B, Crystal Structure Of Chorismate Synthase
 pdb|1UMF|C Chain C, Crystal Structure Of Chorismate Synthase
 pdb|1UMF|D Chain D, Crystal Structure Of Chorismate Synthase
          Length = 365

 Score = 28.5 bits (62), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 167 LLRAKKIKGEEALRMGLVQAAYDS-EEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD 225
           L+RA+ IK  + L +GL Q  Y   + ++AEA M L    A     G   + ++ S Y D
Sbjct: 205 LIRARSIKTNQKLPIGLGQGLYAKLDAKIAEAMMGLNGVKAVEIGKGVESSLLKGSEYND 264

Query: 226 LCGVLGLDIRAVVSN 240
           L     +D +  +SN
Sbjct: 265 L-----MDQKGFLSN 274


>pdb|3Q1T|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From
           Mycobacterium Avium
 pdb|3Q1T|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase From
           Mycobacterium Avium
 pdb|3Q1T|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase From
           Mycobacterium Avium
 pdb|3Q1T|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase From
           Mycobacterium Avium
 pdb|3Q1T|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase From
           Mycobacterium Avium
 pdb|3Q1T|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase From
           Mycobacterium Avium
          Length = 278

 Score = 28.1 bits (61), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 2/122 (1%)

Query: 90  RPVVAAMMDLPMPTXXXXXXXXXXXXFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF 149
           R +V  M++   P               +AL  D  +  R    L      +G    D+ 
Sbjct: 103 RDLVHNMINCDTPVVSAIRGPAVGAGLVVALLADISVAGR-TAKLIDGHTKLGVAAGDHA 161

Query: 150 TALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRK 209
              +   VG A A+   LL  + + GEEA R+GLV    D ++ ++ A+    K   G +
Sbjct: 162 AICWPLLVGMAKAKY-YLLTCETLLGEEAERIGLVSLCVDDDDVLSTAAGIAGKLAQGAQ 220

Query: 210 WA 211
            A
Sbjct: 221 HA 222


>pdb|2GTR|A Chain A, Human Chromodomain Y-Like Protein
 pdb|2GTR|B Chain B, Human Chromodomain Y-Like Protein
 pdb|2GTR|C Chain C, Human Chromodomain Y-Like Protein
          Length = 261

 Score = 26.9 bits (58), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 5/183 (2%)

Query: 6   KHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLD 65
           +  D F   L  +   + +   P  +  + SA++ A A+ +    ++ ++ G  F  GLD
Sbjct: 10  RKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDS--KLVLLSAVGSVFCCGLD 67

Query: 66  XXXXXXXXXXXXXXXXXXYMVESFRPVVAAMMDLPMPTXXXXXXXXXXXXFTLALSHDYV 125
                              M E+ R  V   +    P              ++    D V
Sbjct: 68  FIYFIRRLTDDRKRESTK-MAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCD-V 125

Query: 126 IMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQ 185
           +   +K          G +     T +F   +G A+A  ++LL  +K+  +EA   GLV 
Sbjct: 126 VWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASAN-EMLLSGRKLTAQEACGKGLVS 184

Query: 186 AAY 188
             +
Sbjct: 185 QVF 187


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,493,089
Number of Sequences: 62578
Number of extensions: 167512
Number of successful extensions: 495
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 25
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)