BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041046
(243 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3MIE0|ECHD3_RAT Enoyl-CoA hydratase domain-containing protein 3, mitochondrial
OS=Rattus norvegicus GN=Echdc3 PE=2 SV=1
Length = 300
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 92/210 (43%), Gaps = 22/210 (10%)
Query: 42 KAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMM---D 98
+AE+ +I ++ G FS+G DL A R Y E F+ MM +
Sbjct: 85 EAESEDLKVIIISAEGPVFSSGHDLKELTGAQGRD-------YHTEVFQTCSEVMMLIRN 137
Query: 99 LPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVG 158
P+P VA VNG A AAG L S D + DK V++G F + +G
Sbjct: 138 HPVPIVAMVNGLATAAGCQLVASCDIAVA-SDKSSFATPGVNVG-----LFCSTPAVALG 191
Query: 159 SATARR---DVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMA--GRKWAGE 213
A R+ ++L + I +EALR GL+ EEQ+ E + R+AK++A R
Sbjct: 192 RAVPRKVALEMLFTGEPISAQEALRHGLISKVV-PEEQLEEEATRIAKKIASLSRSVVAL 250
Query: 214 VYAEIRKSLYPDLCGVLGLDIRAVVSNSKL 243
A K L DL L +A+V N L
Sbjct: 251 GKATFYKQLPQDLSTAYFLASQAMVDNLTL 280
>sp|A9MR28|CAID_SALAR Carnitinyl-CoA dehydratase OS=Salmonella arizonae (strain ATCC
BAA-731 / CDC346-86 / RSK2980) GN=caiD PE=3 SV=1
Length = 261
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
A+IT + KFFS G DL A A G A F P + + DL P +A
Sbjct: 50 AIITGAGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTELFDLNKPVIA 99
Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
AVNG+A GF LAL+ D++I D + E +G +PD L K+ D
Sbjct: 100 AVNGYAFGGGFELALAADFIIC-ADHASFALPEAKLG-IVPDSGGVLRLPKILPPAIVND 157
Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
+++ +++ EEALR G+V S ++ +++ LA+Q+
Sbjct: 158 MVMTGRRMTAEEALRWGVVNRVV-SPHELLDSARELARQL 196
>sp|A8ALR7|CAID_CITK8 Carnitinyl-CoA dehydratase OS=Citrobacter koseri (strain ATCC
BAA-895 / CDC 4225-83 / SGSC4696) GN=caiD PE=3 SV=1
Length = 261
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
AVNG+A GF LAL+ D+++ D + E +G +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVC-ADNASFALPEAKLG-IVPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
+L+ +++ EEALR G+V S++ + +++ LA+Q+
Sbjct: 158 MLMTGRRMDAEEALRWGIVNRVV-SQQALMDSARELAQQL 196
>sp|P59395|CAID_SHIFL Carnitinyl-CoA dehydratase OS=Shigella flexneri GN=caiD PE=3 SV=2
Length = 261
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
A+IT + KFFS G DL A A G A F P + + +L P +A
Sbjct: 50 AIITGAGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFNLDKPVIA 99
Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
AVNG+A GF LAL+ D+++ D + E +G +PD L K+ T +
Sbjct: 100 AVNGYAFGGGFELALAADFIVC-ADNASFALPEAKLG-IVPDSGGVLRLPKILPPTIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
+++ +++ EEALR G+V S+ ++ + + LA+Q+
Sbjct: 158 MVMTGRRMGAEEALRWGIVNRVV-SQAELMDNARELAQQL 196
>sp|Q8Z9L5|CAID_SALTI Carnitinyl-CoA dehydratase OS=Salmonella typhi GN=caiD PE=3 SV=3
Length = 261
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
AVNG+A GF LAL+ D+++ + + E +G +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLG-IVPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
+++ +++ EEALR G+V S+ ++ E++ LA+Q+
Sbjct: 158 MVMTGRRMSAEEALRWGIVNRVV-SQSELMESARELAQQL 196
>sp|Q9D7J9|ECHD3_MOUSE Enoyl-CoA hydratase domain-containing protein 3, mitochondrial
OS=Mus musculus GN=Echdc3 PE=2 SV=1
Length = 300
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 91/207 (43%), Gaps = 22/207 (10%)
Query: 42 KAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMM---D 98
+AE+ +I ++ G FS+G DL A R Y E F+ MM +
Sbjct: 85 EAESEDLKVIIISAEGPVFSSGHDLKELTDAQGRD-------YHAEVFQTCSEVMMLIRN 137
Query: 99 LPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVG 158
P+P +A VNG A AAG L S D + DK V++G F + +G
Sbjct: 138 HPVPILAMVNGLATAAGCQLVASCDIAVA-SDKSSFATPGVNVG-----LFCSTPAVALG 191
Query: 159 SATARR---DVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMA--GRKWAGE 213
A R+ ++L + I +EALR GL+ EEQ+ +MR+AK+++ R
Sbjct: 192 RAVPRKVALEMLFTGEPISAQEALRHGLISKVV-PEEQLEAETMRIAKKISSLSRSVVAL 250
Query: 214 VYAEIRKSLYPDLCGVLGLDIRAVVSN 240
A K L DL L +A+V N
Sbjct: 251 GKATFYKQLPQDLRTAYFLASQAMVDN 277
>sp|Q8ZRX5|CAID_SALTY Carnitinyl-CoA dehydratase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=caiD PE=3 SV=3
Length = 261
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
AVNG+A GF LAL+ D+++ + + E +G +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLG-IVPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
+++ +++ EEALR G+V S+ ++ E++ LA+Q+
Sbjct: 158 MVMTGRRMSAEEALRWGVVNRVV-SQSELMESARELAQQL 196
>sp|B4TWR3|CAID_SALSV Carnitinyl-CoA dehydratase OS=Salmonella schwarzengrund (strain
CVM19633) GN=caiD PE=3 SV=1
Length = 261
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
AVNG+A GF LAL+ D+++ + + E +G +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLG-IVPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
+++ +++ EEALR G+V S+ ++ E++ LA+Q+
Sbjct: 158 MVMTGRRMSAEEALRWGVVNRVV-SQSELMESARELAQQL 196
>sp|B4TIG9|CAID_SALHS Carnitinyl-CoA dehydratase OS=Salmonella heidelberg (strain SL476)
GN=caiD PE=3 SV=1
Length = 261
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
AVNG+A GF LAL+ D+++ + + E +G +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLG-IVPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
+++ +++ EEALR G+V S+ ++ E++ LA+Q+
Sbjct: 158 MVMTGRRMSAEEALRWGVVNRVV-SQSELMESARELAQQL 196
>sp|B4T6J5|CAID_SALNS Carnitinyl-CoA dehydratase OS=Salmonella newport (strain SL254)
GN=caiD PE=3 SV=1
Length = 261
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
AVNG+A GF LAL+ D+++ + + E +G +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLG-IVPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
+++ +++ EEALR G+V S+ ++ E++ LA+Q+
Sbjct: 158 MVMTGRRMSAEEALRWGVVNRVV-SQSELMESARELAQQL 196
>sp|B5BL54|CAID_SALPK Carnitinyl-CoA dehydratase OS=Salmonella paratyphi A (strain
AKU_12601) GN=caiD PE=3 SV=1
Length = 261
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
AVNG+A GF LAL+ D+++ + + E +G +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLG-IVPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
+++ +++ EEALR G+V S+ ++ +++ LA+Q+
Sbjct: 158 MVMTGRRMSAEEALRWGIVNRVV-SQSELMDSARELAQQL 196
>sp|C0Q4L2|CAID_SALPC Carnitinyl-CoA dehydratase OS=Salmonella paratyphi C (strain
RKS4594) GN=caiD PE=3 SV=1
Length = 261
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
AVNG+A GF LAL+ D+++ + + E +G +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLG-IVPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
+++ +++ EEALR G+V S+ ++ +++ LA+Q+
Sbjct: 158 MVMTGRRMSAEEALRWGIVNRVV-SQSELMDSARELAQQL 196
>sp|Q5PIL1|CAID_SALPA Carnitinyl-CoA dehydratase OS=Salmonella paratyphi A (strain ATCC
9150 / SARB42) GN=caiD PE=3 SV=1
Length = 261
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
AVNG+A GF LAL+ D+++ + + E +G +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLG-IVPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
+++ +++ EEALR G+V S+ ++ +++ LA+Q+
Sbjct: 158 MVMTGRRMSAEEALRWGIVNRVV-SQSELMDSARELAQQL 196
>sp|Q57TJ1|CAID_SALCH Carnitinyl-CoA dehydratase OS=Salmonella choleraesuis (strain
SC-B67) GN=caiD PE=3 SV=1
Length = 261
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
AVNG+A GF LAL+ D+++ + + E +G +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLG-IVPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
+++ +++ EEALR G+V S+ ++ +++ LA+Q+
Sbjct: 158 MVMTGRRMSAEEALRWGIVNRVV-SQSELMDSARELAQQL 196
>sp|B5F749|CAID_SALA4 Carnitinyl-CoA dehydratase OS=Salmonella agona (strain SL483)
GN=caiD PE=3 SV=1
Length = 261
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
AVNG+A GF LAL+ D+++ + + E +G +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLG-IVPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
+++ +++ EEALR G+V S+ ++ +++ LA+Q+
Sbjct: 158 MVMTGRRMSAEEALRWGIVNRVV-SQSELMDSARELAQQL 196
>sp|A9MYJ5|CAID_SALPB Carnitinyl-CoA dehydratase OS=Salmonella paratyphi B (strain ATCC
BAA-1250 / SPB7) GN=caiD PE=3 SV=1
Length = 261
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
AVNG+A GF LAL+ D+++ + + E +G +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLG-IVPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
+++ +++ EEALR G+V S+ ++ +++ LA+Q+
Sbjct: 158 MVMTGRRMSAEEALRWGVVNRVV-SQSELMDSARELAQQL 196
>sp|B5FHG4|CAID_SALDC Carnitinyl-CoA dehydratase OS=Salmonella dublin (strain
CT_02021853) GN=caiD PE=3 SV=1
Length = 261
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
AVNG+A GF LAL+ D+++ + + E +G +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLG-IVPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
+++ +++ EEALR G+V S+ ++ +++ LA+Q+
Sbjct: 158 MVMTGRRMSAEEALRWGVVNRVV-SQSELMDSARELAQQL 196
>sp|Q8XA35|CAID_ECO57 Carnitinyl-CoA dehydratase OS=Escherichia coli O157:H7 GN=caiD PE=3
SV=3
Length = 261
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
A+IT + KFFS G DL A A G A F P + + +L P +A
Sbjct: 50 AIITGAGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFNLDKPVIA 99
Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
AVNG+A GF LAL+ D+++ D + E +G +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVC-ADNASFALPEAKLG-IVPDSGGVLRLPKILPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
+++ +++ EEALR G+V S+ ++ + + LA+Q+
Sbjct: 158 MVMTGRRMGAEEALRWGIVNRVV-SQAELMDNARELAQQL 196
>sp|P31551|CAID_ECOLI Carnitinyl-CoA dehydratase OS=Escherichia coli (strain K12) GN=caiD
PE=1 SV=4
Length = 261
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
A+IT + KFFS G DL A A G A F P + + +L P +A
Sbjct: 50 AIITGAGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFNLDKPVIA 99
Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
AVNG+A GF LAL+ D+++ D + E +G +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVC-ADNASFALPEAKLG-IVPDSGGVLRLPKILPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
+++ +++ EEALR G+V S+ ++ + + LA+Q+
Sbjct: 158 MVMTGRRMGAEEALRWGIVNRVV-SQAELMDNARELAQQL 196
>sp|B1IRE0|CAID_ECOLC Carnitinyl-CoA dehydratase OS=Escherichia coli (strain ATCC 8739 /
DSM 1576 / Crooks) GN=caiD PE=3 SV=1
Length = 261
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
A+IT + KFFS G DL A A G A F P + + +L P +A
Sbjct: 50 AIITGAGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFNLDKPVIA 99
Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
AVNG+A GF LAL+ D+++ D + E +G +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVC-ADNASFALPEAKLG-IVPDSGGVLRLPKILPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
+++ +++ EEALR G+V S+ ++ + + LA+Q+
Sbjct: 158 MVMTGRRMGAEEALRWGIVNRVV-SQAELMDNARELAQQL 196
>sp|B1LFW9|CAID_ECOSM Carnitinyl-CoA dehydratase OS=Escherichia coli (strain SMS-3-5 /
SECEC) GN=caiD PE=3 SV=1
Length = 261
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
A+IT + KFFS G DL A A G A F P + + +L P +A
Sbjct: 50 AIITGAGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFNLDKPVIA 99
Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
AVNG+A GF LAL+ D+++ D + E +G +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVC-ADNASFALPEAKLG-IVPDSGGVLRLPKILPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
+++ +++ EEALR G+V S+ ++ + + LA+Q+
Sbjct: 158 MVMTGRRMGAEEALRWGVVNRVV-SQAELMDNARELAQQL 196
>sp|Q8FLA6|CAID_ECOL6 Carnitinyl-CoA dehydratase OS=Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC) GN=caiD PE=3 SV=3
Length = 261
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
A+IT + KFFS G DL A A G A F P + + +L P +A
Sbjct: 50 AIITGAGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFNLDKPVIA 99
Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
AVNG+A GF LAL+ D+++ D + E +G +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVC-ADNASFALPEAKLG-IVPDSGGVLRLPKILPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
+++ +++ EEALR G+V S+ ++ + + LA+Q+
Sbjct: 158 MVMTGRRMGAEEALRWGVVNRVV-SQAELMDNARELAQQL 196
>sp|Q0TLV3|CAID_ECOL5 Carnitinyl-CoA dehydratase OS=Escherichia coli O6:K15:H31 (strain
536 / UPEC) GN=caiD PE=3 SV=1
Length = 261
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
A+IT + KFFS G DL A A G A F P + + +L P +A
Sbjct: 50 AIITGAGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFNLDKPVIA 99
Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
AVNG+A GF LAL+ D+++ D + E +G +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVC-ADNASFALPEAKLG-IVPDSGGVLRLPKILPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
+++ +++ EEALR G+V S+ ++ + + LA+Q+
Sbjct: 158 MVMTGRRMGAEEALRWGVVNRVV-SQAELMDNARELAQQL 196
>sp|B5RGA4|CAID_SALG2 Carnitinyl-CoA dehydratase OS=Salmonella gallinarum (strain 287/91
/ NCTC 13346) GN=caiD PE=3 SV=1
Length = 261
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 27/165 (16%)
Query: 50 ALITTSHGKFFSNGLDLAWAQ---------AAGSRAGARERLLYMVESFRPVVAAMMDLP 100
A+IT KFFS G DL A +G AG E + DL
Sbjct: 50 AIITGGGEKFFSAGWDLKAAAEGEAPDADFGSGGFAGLTE---------------IFDLD 94
Query: 101 MPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSA 160
P +AAVNG+A GF LAL+ D+++ + + E +G +PD L K+
Sbjct: 95 KPVIAAVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLG-IVPDSGGVLRLPKLLPP 152
Query: 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
++++ +++ EEALR G+V S+ ++ +++ LA+Q+
Sbjct: 153 AIVNEMVMTGRRMSAEEALRWGVVNRVV-SQSELMDSARELAQQL 196
>sp|B5R1Q9|CAID_SALEP Carnitinyl-CoA dehydratase OS=Salmonella enteritidis PT4 (strain
P125109) GN=caiD PE=3 SV=1
Length = 261
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 27/165 (16%)
Query: 50 ALITTSHGKFFSNGLDLAWAQ---------AAGSRAGARERLLYMVESFRPVVAAMMDLP 100
A+IT KFFS G DL A +G AG E + DL
Sbjct: 50 AIITGGGEKFFSAGWDLKAAAEGEAPDADFGSGGFAGLTE---------------IFDLD 94
Query: 101 MPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSA 160
P +AAVNG+A GF LAL+ D+++ + + E +G +PD L K+
Sbjct: 95 KPVIAAVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLG-IVPDSGGVLRLPKLLPP 152
Query: 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
++++ +++ EEALR G+V S+ ++ +++ LA+Q+
Sbjct: 153 AIVNEMVMTGRRMSAEEALRWGVVNRVV-SQSELMDSARELAQQL 196
>sp|A3QFP3|FADJ_SHELP Fatty acid oxidation complex subunit alpha OS=Shewanella loihica
(strain ATCC BAA-1088 / PV-4) GN=fadJ PE=3 SV=1
Length = 706
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 10/161 (6%)
Query: 25 RFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLY 84
FGP I +A+ KA+A +I + F G D++ A + ARE
Sbjct: 32 EFGPE----ICEMLAEIKADAGIRGVVIISGKKDSFVAGADISMLDACATAEDARE---- 83
Query: 85 MVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALS-HDYVIMRRDKGVLYMSEVDIGA 143
+ + V A+ L +P VAA+NG G LAL+ H V +K +L + EV +G
Sbjct: 84 LSKQGHEVFFALESLSIPVVAAINGACLGGGLELALACHQRVCTDSNKTMLGLPEVQLGL 143
Query: 144 TLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV 184
T VG A + D++L K+++ ++AL+MGLV
Sbjct: 144 LPGGGGTQRLPRLVGIAKS-LDMMLTGKQLRAKQALKMGLV 183
>sp|Q869N6|CRTL_DICDI 3-hydroxybutyryl-CoA dehydratase-like protein, mitochondrial
OS=Dictyostelium discoideum GN=DDB_G0271866 PE=3 SV=1
Length = 299
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 13/168 (7%)
Query: 43 AEATPGSALITTSHGKFFSNGLDLAW-AQAAGSRAGARERLLYMVESFRPVVAAMMDLPM 101
AE ++ T GK FS G DL + + +R++ E F + LP+
Sbjct: 75 AEDKDLKCVVLTGEGKAFSAGGDLDFLIERTKDTPENNQRIM---ERFYRTFLYIRSLPV 131
Query: 102 PTVAAVNGHAAAAGFTLALSHDYVIMRRDKGV-LYMSEVDI--GATLPDYFTALFRAKVG 158
P ++A+NG A AGF LAL+ D ++ V L +++ I G + T + V
Sbjct: 132 PIISAINGAAIGAGFCLALATDIRVVSNKAPVGLTFTKLGIHPGMGVTHSITNIVGQDVA 191
Query: 159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMA 206
S +LL + IKG+EA R+GLV + +S +QV ++ LA+ ++
Sbjct: 192 SY-----MLLSSDIIKGDEAQRLGLVLKSVES-DQVLPTALNLAETIS 233
>sp|Q96DC8|ECHD3_HUMAN Enoyl-CoA hydratase domain-containing protein 3, mitochondrial
OS=Homo sapiens GN=ECHDC3 PE=1 SV=2
Length = 303
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 86/202 (42%), Gaps = 30/202 (14%)
Query: 51 LITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDL---PMPTVAAV 107
+I ++ G FS+G DL R Y E F+ MM + P+P +A V
Sbjct: 94 IIISAEGPVFSSGHDLKELTEEQGRD-------YHAEVFQTCSKVMMHIRNHPVPVIAMV 146
Query: 108 NGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARR--- 164
NG AAAAG L S D + DK V++G LF + G A AR
Sbjct: 147 NGLAAAAGCQLVASCDIAVA-SDKSSFATPGVNVG---------LFCSTPGVALARAVPR 196
Query: 165 ----DVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMA--GRKWAGEVYAEI 218
++L + I +EAL GL+ E ++ E +MR+A+++A R A
Sbjct: 197 KVALEMLFTGEPISAQEALLHGLLSKVV-PEAELQEETMRIARKIASLSRPVVSLGKATF 255
Query: 219 RKSLYPDLCGVLGLDIRAVVSN 240
K L DL L +A+V N
Sbjct: 256 YKQLPQDLGTAYYLTSQAMVDN 277
>sp|Q7N288|FADJ_PHOLL Fatty acid oxidation complex subunit alpha OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=fadJ PE=3
SV=2
Length = 727
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 6/158 (3%)
Query: 31 IDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFR 90
+D L+ +A+ + ++ + F G D++ ++ AR+ + E +
Sbjct: 51 VDQFLNVFKQAQQSSGLKGLILISGKPDTFIAGADISMIAGCKTKEDARD----LAEKGQ 106
Query: 91 PVVAAMMDLPMPTVAAVNGHAAAAGFTLALS-HDYVIMRRDKGVLYMSEVDIGATLPDYF 149
+ + + + P+P VAA++G G LAL+ H V + DK L + EV +G
Sbjct: 107 KLFSQIANYPLPVVAAIHGACLGGGLELALACHWRVCSQDDKTRLGLPEVQLGLLPGSGG 166
Query: 150 TALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAA 187
T +G ++A D++L K+++ ++ALR+GLV A
Sbjct: 167 TQRLPRLIGVSSA-LDIMLTGKQLRAKQALRLGLVDDA 203
>sp|C6DAL7|FADJ_PECCP Fatty acid oxidation complex subunit alpha OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=fadJ PE=3
SV=1
Length = 727
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 69/156 (44%), Gaps = 6/156 (3%)
Query: 33 SILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV 92
ILS +A+ AT ++ +S F G D+ S A E+F +
Sbjct: 48 QILSVFEQARQHATLRGLILISSKPDSFIAGADITMLNQCRSAEQAENLAKQGQETFEQI 107
Query: 93 VAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRD-KGVLYMSEVDIGATLPDYFTA 151
A LP P VAA++G G LAL+ DY + D K VL + EV +G T
Sbjct: 108 AA----LPFPVVAAIHGACLGGGLELALACDYRVCSLDEKTVLGLPEVQLGLLPGSGGTQ 163
Query: 152 LFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAA 187
+G +A D++L + ++ +ALR GLV A
Sbjct: 164 RLPRLIGLDSA-LDLILTGRHLRANQALRQGLVDEA 198
>sp|A0PJR5|ECHD3_DANRE Enoyl-CoA hydratase domain-containing protein 3, mitochondrial
OS=Danio rerio GN=echdc3 PE=2 SV=2
Length = 289
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 16/160 (10%)
Query: 51 LITTSHGKFFSNGLDLA-WAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNG 109
+I ++ G FS+G DL + A GS R + S ++ + DLP+P +A VNG
Sbjct: 77 IIISAVGPVFSSGHDLQELSSAEGSDLPRR-----VFHSCSELMMLIQDLPVPVIAMVNG 131
Query: 110 HAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARR---DV 166
A AAG L S D V + +K V++G F + +G R+ +
Sbjct: 132 VATAAGCQLVASCD-VAVASEKSTFATPGVNVG-----LFCSTPAVAIGRTVPRKIAMQM 185
Query: 167 LLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMA 206
LL + + ++AL+ GL+ A + SEE++ + ++ +A+++
Sbjct: 186 LLTGRPLSAQQALQHGLLSAVF-SEERLEDETLAIARRVC 224
>sp|Q8GB17|CAID_PROSL Carnitinyl-CoA dehydratase OS=Proteus sp. (strain LE138) GN=caiD
PE=1 SV=3
Length = 261
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 27/166 (16%)
Query: 50 ALITTSHGKFFSNGLDLAWAQ---------AAGSRAGARERLLYMVESFRPVVAAMMDLP 100
A+IT + +FF G DL A AG AG E + DL
Sbjct: 50 AIITGAGERFFCAGWDLKAAAEGEAPDADFGAGGFAGLTE---------------LFDLN 94
Query: 101 MPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSA 160
P +AA+NG+A GF LAL+ D +I D + E +G +PD L K
Sbjct: 95 KPVIAAINGYAFGGGFELALAADMIIC-SDNASFALPEAQLG-IVPDSGGVLRLPKRLPP 152
Query: 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMA 206
++L+ +++ +EALR G+ + E + +++ LA Q+A
Sbjct: 153 AIVNEMLMTGRRMNAQEALRWGIANRVVSATE-LMDSARELADQIA 197
>sp|B4EY26|CAID_PROMH Carnitinyl-CoA dehydratase OS=Proteus mirabilis (strain HI4320)
GN=caiD PE=3 SV=1
Length = 261
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 27/166 (16%)
Query: 50 ALITTSHGKFFSNGLDLAWAQ---------AAGSRAGARERLLYMVESFRPVVAAMMDLP 100
A+IT + +FF G DL A AG AG E + DL
Sbjct: 50 AIITGAGERFFCAGWDLKAAAEGEAPDADFGAGGFAGLTE---------------LFDLN 94
Query: 101 MPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSA 160
P +AA+NG+A GF LAL+ D +I D + E +G +PD L K
Sbjct: 95 KPVIAAINGYAFGGGFELALAADMIIC-SDNASFALPEAQLG-IVPDSGGVLRLPKRLPP 152
Query: 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMA 206
++L+ +++ +EALR G+ + E + +++ LA Q+A
Sbjct: 153 AIVNEMLMTGRRMNAQEALRWGIANRVVSATE-LMDSARELADQIA 197
>sp|B0TL21|FADJ_SHEHH Fatty acid oxidation complex subunit alpha OS=Shewanella
halifaxensis (strain HAW-EB4) GN=fadJ PE=3 SV=1
Length = 708
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 10/164 (6%)
Query: 25 RFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLY 84
FGP D +A+ KA+ + ++ + F G D++ A + A++
Sbjct: 34 EFGPEISD----VLAEIKADTSIKGLVLVSGKKDSFVAGADISMLDACETATDAKQ---- 85
Query: 85 MVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALS-HDYVIMRRDKGVLYMSEVDIGA 143
+ + V + LP+P VAA+NG G LAL+ H V K ++ + EV +G
Sbjct: 86 LSQQGHVVFNELESLPIPVVAAINGACLGGGLELALACHKRVCSLNPKTMMGVPEVQLGL 145
Query: 144 TLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAA 187
T VG TA D++L K+++ ++AL+MGLV A
Sbjct: 146 LPGGGGTQRLPRLVGVTTA-LDMMLTGKQLRPKQALKMGLVDDA 188
>sp|Q8DDK6|FADB_VIBVU Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus
(strain CMCP6) GN=fadB PE=3 SV=1
Length = 723
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 11/181 (6%)
Query: 28 PSAIDSI----LSAIAKAKAEATPGSAL---ITTSHGKFFSNGLDLAWAQAAGSRAGARE 80
P++++ + L+++ KA T S L + TS + F G D+ + G A E
Sbjct: 25 PNSVNKLDLATLASLDKALDALTAHSGLKGVMLTSDKEAFIVGADIT--EFLGLFAKPEE 82
Query: 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVD 140
L ++ + + DLP+PTVA V GH G L+ D I + + + E
Sbjct: 83 ELDQWLQFANSIFNKLEDLPVPTVAVVKGHTLGGGCECVLATDLRIGDKTTSI-GLPETK 141
Query: 141 IGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMR 200
+G +P + + +V A + +++ + K + EEAL++GL+ A DS+ A A
Sbjct: 142 LG-IMPGFGGCVRLPRVIGADSAMEIITQGKACRAEEALKIGLLDAVVDSDRLYASALQT 200
Query: 201 L 201
L
Sbjct: 201 L 201
>sp|Q07ZP8|FADJ_SHEFN Fatty acid oxidation complex subunit alpha OS=Shewanella
frigidimarina (strain NCIMB 400) GN=fadJ PE=3 SV=1
Length = 710
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 13/193 (6%)
Query: 23 EHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERL 82
+ +FGP I IL+ I KA+++ ++ + F G D+ A + A+
Sbjct: 32 KEQFGPE-ISEILTEI---KADSSIKGLVVISGKADSFVAGADITMLAACKNEEQAK--- 84
Query: 83 LYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALS-HDYVIMRRDKGVLYMSEVDI 141
+ + V A + L +P VAA+NG G LAL+ H V K +L + EV +
Sbjct: 85 -TLSQQGHVVFAELEGLSIPVVAAINGACLGGGLELALACHLRVCSDDKKTMLGVPEVQL 143
Query: 142 GATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRL 201
G T VG TA D++L K+I+ ++AL+MGLV + + E ++ L
Sbjct: 144 GLLPGGGGTQRLPRLVGITTA-LDMMLTGKQIRPKQALKMGLVNDVVPN-SILLETAVEL 201
Query: 202 AKQMAGRKWAGEV 214
AK+ G++ A V
Sbjct: 202 AKK--GKQAAKPV 212
>sp|Q7MQH9|FADB_VIBVY Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus
(strain YJ016) GN=fadB PE=3 SV=1
Length = 723
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 4/151 (2%)
Query: 51 LITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGH 110
++ TS + F G D+ + G A E L ++ + + DLP+PTVA V GH
Sbjct: 55 VMLTSDKEAFIVGADIT--EFLGLFAKPEEELDQWLQFANSIFNKLEDLPVPTVAVVKGH 112
Query: 111 AAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRA 170
G L+ D I + + + E +G +P + + +V A + +++ +
Sbjct: 113 TLGGGCECVLATDLRIGDKTTSI-GLPETKLG-IMPGFGGCVRLPRVIGADSAMEIITQG 170
Query: 171 KKIKGEEALRMGLVQAAYDSEEQVAEASMRL 201
K + EEAL++GL+ A DS+ A A L
Sbjct: 171 KACRAEEALKIGLLDAVVDSDRLYASALQTL 201
>sp|Q7MZ92|FADB_PHOLL Fatty acid oxidation complex subunit alpha OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=fadB PE=3
SV=1
Length = 728
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 98 DLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKV 157
DLP+PT++A+NG+A G LS D+ + D + + E +G +P + ++ ++
Sbjct: 100 DLPVPTISAINGYALGGGCECVLSTDFRVASPDIRI-GLPETKLG-IMPGFGGSVRLPRL 157
Query: 158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
D++ K I EEAL+ GL+ A E+ V A L + +AG
Sbjct: 158 IGTDNALDIIAAGKDIGAEEALKNGLIDAVVPKEKLVDSAVSMLEQAIAGN 208
>sp|Q668V1|FADJ_YERPS Fatty acid oxidation complex subunit alpha OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=fadJ
PE=3 SV=2
Length = 753
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 6/154 (3%)
Query: 32 DSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRP 91
D I + + +A A +I + F G D+ A + AR + + +
Sbjct: 44 DQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACRTAHDAR----VLAQKGQS 99
Query: 92 VVAAMMDLPMPTVAAVNGHAAAAGFTLALS-HDYVIMRRDKGVLYMSEVDIGATLPDYFT 150
++A + P+P VAA++G G LAL+ H + DK VL + EV +G T
Sbjct: 100 ILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGT 159
Query: 151 ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV 184
VG + A D++L K+I+ +AL+MGLV
Sbjct: 160 QRLPRLVGVSKA-LDMILTGKQIRPRQALKMGLV 192
>sp|Q1CHK2|FADJ_YERPN Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv.
Antiqua (strain Nepal516) GN=fadJ PE=3 SV=2
Length = 747
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 6/154 (3%)
Query: 32 DSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRP 91
D I + + +A A +I + F G D+ A + AR + + +
Sbjct: 44 DQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACRTAHDAR----VLAQKGQS 99
Query: 92 VVAAMMDLPMPTVAAVNGHAAAAGFTLALS-HDYVIMRRDKGVLYMSEVDIGATLPDYFT 150
++A + P+P VAA++G G LAL+ H + DK VL + EV +G T
Sbjct: 100 ILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGT 159
Query: 151 ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV 184
VG + A D++L K+I+ +AL+MGLV
Sbjct: 160 QRLPRLVGVSKA-LDMILTGKQIRPRQALKMGLV 192
>sp|Q8ZD45|FADJ_YERPE Fatty acid oxidation complex subunit alpha OS=Yersinia pestis
GN=fadJ PE=3 SV=2
Length = 747
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 6/154 (3%)
Query: 32 DSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRP 91
D I + + +A A +I + F G D+ A + AR + + +
Sbjct: 44 DQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACRTAHDAR----VLAQKGQS 99
Query: 92 VVAAMMDLPMPTVAAVNGHAAAAGFTLALS-HDYVIMRRDKGVLYMSEVDIGATLPDYFT 150
++A + P+P VAA++G G LAL+ H + DK VL + EV +G T
Sbjct: 100 ILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGT 159
Query: 151 ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV 184
VG + A D++L K+I+ +AL+MGLV
Sbjct: 160 QRLPRLVGVSKA-LDMILTGKQIRPRQALKMGLV 192
>sp|Q1C660|FADJ_YERPA Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv.
Antiqua (strain Antiqua) GN=fadJ PE=3 SV=2
Length = 747
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 6/154 (3%)
Query: 32 DSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRP 91
D I + + +A A +I + F G D+ A + AR + + +
Sbjct: 44 DQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACRTAHDAR----VLAQKGQS 99
Query: 92 VVAAMMDLPMPTVAAVNGHAAAAGFTLALS-HDYVIMRRDKGVLYMSEVDIGATLPDYFT 150
++A + P+P VAA++G G LAL+ H + DK VL + EV +G T
Sbjct: 100 ILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGT 159
Query: 151 ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV 184
VG + A D++L K+I+ +AL+MGLV
Sbjct: 160 QRLPRLVGVSKA-LDMILTGKQIRPRQALKMGLV 192
>sp|A7FGK1|FADJ_YERP3 Fatty acid oxidation complex subunit alpha OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=fadJ PE=3 SV=1
Length = 747
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 6/154 (3%)
Query: 32 DSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRP 91
D I + + +A A +I + F G D+ A + AR + + +
Sbjct: 44 DQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACRTAHDAR----VLAQKGQS 99
Query: 92 VVAAMMDLPMPTVAAVNGHAAAAGFTLALS-HDYVIMRRDKGVLYMSEVDIGATLPDYFT 150
++A + P+P VAA++G G LAL+ H + DK VL + EV +G T
Sbjct: 100 ILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGT 159
Query: 151 ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV 184
VG + A D++L K+I+ +AL+MGLV
Sbjct: 160 QRLPRLVGVSKA-LDMILTGKQIRPRQALKMGLV 192
>sp|A4TM82|FADJ_YERPP Fatty acid oxidation complex subunit alpha OS=Yersinia pestis
(strain Pestoides F) GN=fadJ PE=3 SV=1
Length = 774
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 6/154 (3%)
Query: 32 DSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRP 91
D I + + +A A +I + F G D+ A + AR + + +
Sbjct: 71 DQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACRTAHDAR----VLAQKGQS 126
Query: 92 VVAAMMDLPMPTVAAVNGHAAAAGFTLALS-HDYVIMRRDKGVLYMSEVDIGATLPDYFT 150
++A + P+P VAA++G G LAL+ H + DK VL + EV +G T
Sbjct: 127 ILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGT 186
Query: 151 ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV 184
VG + A D++L K+I+ +AL+MGLV
Sbjct: 187 QRLPRLVGVSKA-LDMILTGKQIRPRQALKMGLV 219
>sp|B1JP63|FADB_YERPY Fatty acid oxidation complex subunit alpha OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=fadB
PE=3 SV=1
Length = 729
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 98 DLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKV 157
DLP+PT++A+NG+A G L+ D+ I + + + E +G +P + ++ ++
Sbjct: 100 DLPVPTISAINGYALGGGCECILATDFRIASPEARI-GLPETKLG-IMPGFGGSVRLPRL 157
Query: 158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
A + +++ K + +AL++GLV A D E+ V A L + + G+
Sbjct: 158 LGADSALEIIATGKDVTANDALKIGLVDAVVDPEKLVGSALTMLKQAIDGK 208
>sp|A4TR27|FADB_YERPP Fatty acid oxidation complex subunit alpha OS=Yersinia pestis
(strain Pestoides F) GN=fadB PE=3 SV=1
Length = 729
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 98 DLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKV 157
DLP+PT++A+NG+A G L+ D+ I + + + E +G +P + ++ ++
Sbjct: 100 DLPVPTISAINGYALGGGCECILATDFRIASPEARI-GLPETKLG-IMPGFGGSVRLPRL 157
Query: 158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
A + +++ K + +AL++GLV A D E+ V A L + + G+
Sbjct: 158 LGADSALEIIATGKDVTANDALKIGLVDAVVDPEKLVGSALTMLKQAIDGK 208
>sp|Q1CN99|FADB_YERPN Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv.
Antiqua (strain Nepal516) GN=fadB PE=3 SV=1
Length = 729
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 98 DLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKV 157
DLP+PT++A+NG+A G L+ D+ I + + + E +G +P + ++ ++
Sbjct: 100 DLPVPTISAINGYALGGGCECILATDFRIASPEARI-GLPETKLG-IMPGFGGSVRLPRL 157
Query: 158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
A + +++ K + +AL++GLV A D E+ V A L + + G+
Sbjct: 158 LGADSALEIIATGKDVTANDALKIGLVDAVVDPEKLVGSALTMLKQAIDGK 208
>sp|A9R754|FADB_YERPG Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv.
Antiqua (strain Angola) GN=fadB PE=3 SV=1
Length = 729
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 98 DLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKV 157
DLP+PT++A+NG+A G L+ D+ I + + + E +G +P + ++ ++
Sbjct: 100 DLPVPTISAINGYALGGGCECILATDFRIASPEARI-GLPETKLG-IMPGFGGSVRLPRL 157
Query: 158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
A + +++ K + +AL++GLV A D E+ V A L + + G+
Sbjct: 158 LGADSALEIIATGKDVTANDALKIGLVDAVVDPEKLVGSALTMLKQAIDGK 208
>sp|Q8ZAN0|FADB_YERPE Fatty acid oxidation complex subunit alpha OS=Yersinia pestis
GN=fadB PE=3 SV=1
Length = 729
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 98 DLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKV 157
DLP+PT++A+NG+A G L+ D+ I + + + E +G +P + ++ ++
Sbjct: 100 DLPVPTISAINGYALGGGCECILATDFRIASPEARI-GLPETKLG-IMPGFGGSVRLPRL 157
Query: 158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
A + +++ K + +AL++GLV A D E+ V A L + + G+
Sbjct: 158 LGADSALEIIATGKDVTANDALKIGLVDAVVDPEKLVGSALTMLKQAIDGK 208
>sp|Q1C2C4|FADB_YERPA Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv.
Antiqua (strain Antiqua) GN=fadB PE=3 SV=1
Length = 729
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 98 DLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKV 157
DLP+PT++A+NG+A G L+ D+ I + + + E +G +P + ++ ++
Sbjct: 100 DLPVPTISAINGYALGGGCECILATDFRIASPEARI-GLPETKLG-IMPGFGGSVRLPRL 157
Query: 158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
A + +++ K + +AL++GLV A D E+ V A L + + G+
Sbjct: 158 LGADSALEIIATGKDVTANDALKIGLVDAVVDPEKLVGSALTMLKQAIDGK 208
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,485,495
Number of Sequences: 539616
Number of extensions: 2979678
Number of successful extensions: 10067
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 197
Number of HSP's that attempted gapping in prelim test: 9753
Number of HSP's gapped (non-prelim): 370
length of query: 243
length of database: 191,569,459
effective HSP length: 114
effective length of query: 129
effective length of database: 130,053,235
effective search space: 16776867315
effective search space used: 16776867315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)