Query 041046
Match_columns 243
No_of_seqs 128 out of 1323
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 03:15:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041046.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041046hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02267 enoyl-CoA hydratase/i 100.0 5.9E-49 1.3E-53 329.1 27.4 236 1-243 1-239 (239)
2 PRK08139 enoyl-CoA hydratase; 100.0 2.2E-49 4.9E-54 336.8 23.7 213 1-226 12-224 (266)
3 PRK09120 p-hydroxycinnamoyl Co 100.0 5.7E-49 1.2E-53 335.7 24.5 217 2-228 10-227 (275)
4 PRK05980 enoyl-CoA hydratase; 100.0 5.2E-49 1.1E-53 333.8 23.7 215 2-226 5-221 (260)
5 PRK06142 enoyl-CoA hydratase; 100.0 8.2E-49 1.8E-53 334.6 23.8 218 2-227 8-232 (272)
6 PRK06190 enoyl-CoA hydratase; 100.0 9.4E-49 2E-53 331.2 23.0 211 1-227 5-216 (258)
7 PRK05862 enoyl-CoA hydratase; 100.0 9.8E-49 2.1E-53 331.5 23.0 209 2-226 6-215 (257)
8 PRK05995 enoyl-CoA hydratase; 100.0 1.3E-48 2.8E-53 331.7 23.5 213 2-225 6-218 (262)
9 PRK09674 enoyl-CoA hydratase-i 100.0 1.3E-48 2.8E-53 330.4 22.9 209 1-225 3-212 (255)
10 PRK08150 enoyl-CoA hydratase; 100.0 1.8E-48 3.8E-53 329.4 23.6 209 1-225 3-212 (255)
11 PRK06144 enoyl-CoA hydratase; 100.0 2.3E-48 5.1E-53 330.0 24.3 214 2-228 10-226 (262)
12 PRK07260 enoyl-CoA hydratase; 100.0 2.5E-48 5.5E-53 328.7 23.9 217 2-228 4-221 (255)
13 PRK06563 enoyl-CoA hydratase; 100.0 1.7E-48 3.7E-53 329.7 22.6 211 2-226 1-213 (255)
14 TIGR03210 badI 2-ketocyclohexa 100.0 2.5E-48 5.3E-53 328.8 23.4 210 2-225 4-214 (256)
15 TIGR02280 PaaB1 phenylacetate 100.0 3.6E-48 7.7E-53 327.9 24.3 213 2-226 1-214 (256)
16 PRK06143 enoyl-CoA hydratase; 100.0 2.7E-48 5.9E-53 328.4 23.5 211 2-226 8-220 (256)
17 PRK08258 enoyl-CoA hydratase; 100.0 3.5E-48 7.6E-53 331.4 24.3 216 2-226 19-235 (277)
18 PRK05674 gamma-carboxygeranoyl 100.0 2E-48 4.3E-53 330.8 22.4 216 2-228 7-223 (265)
19 PRK07658 enoyl-CoA hydratase; 100.0 3.5E-48 7.7E-53 328.2 23.6 210 2-225 4-214 (257)
20 PRK09245 enoyl-CoA hydratase; 100.0 3.4E-48 7.4E-53 329.8 23.5 217 1-226 4-224 (266)
21 PRK05869 enoyl-CoA hydratase; 100.0 6.1E-48 1.3E-52 319.6 24.0 204 7-225 15-219 (222)
22 PRK08140 enoyl-CoA hydratase; 100.0 5.9E-48 1.3E-52 327.7 24.4 215 2-227 6-221 (262)
23 PRK07511 enoyl-CoA hydratase; 100.0 4.9E-48 1.1E-52 327.9 23.6 214 2-226 5-219 (260)
24 PRK09076 enoyl-CoA hydratase; 100.0 6.6E-48 1.4E-52 326.6 24.0 209 2-225 5-215 (258)
25 PRK07327 enoyl-CoA hydratase; 100.0 7.4E-48 1.6E-52 327.9 24.5 212 2-225 13-226 (268)
26 PRK06127 enoyl-CoA hydratase; 100.0 8.2E-48 1.8E-52 327.8 24.3 213 2-226 13-227 (269)
27 PRK08138 enoyl-CoA hydratase; 100.0 5.2E-48 1.1E-52 327.8 22.9 209 2-226 9-219 (261)
28 PRK06023 enoyl-CoA hydratase; 100.0 6.8E-48 1.5E-52 325.3 23.4 209 2-225 5-217 (251)
29 KOG1680 Enoyl-CoA hydratase [L 100.0 4.9E-49 1.1E-53 323.2 15.7 212 4-231 41-253 (290)
30 PF00378 ECH: Enoyl-CoA hydrat 100.0 3.4E-48 7.4E-53 326.2 20.9 215 3-231 1-216 (245)
31 PRK05809 3-hydroxybutyryl-CoA 100.0 1.6E-47 3.5E-52 324.7 24.1 211 2-226 6-218 (260)
32 PRK06688 enoyl-CoA hydratase; 100.0 1.1E-47 2.5E-52 325.5 23.2 211 2-227 7-218 (259)
33 TIGR01929 menB naphthoate synt 100.0 1.3E-47 2.8E-52 324.9 23.2 211 2-225 4-217 (259)
34 PLN02664 enoyl-CoA hydratase/d 100.0 1.6E-47 3.4E-52 327.0 23.8 216 3-226 11-233 (275)
35 PRK07657 enoyl-CoA hydratase; 100.0 1.2E-47 2.6E-52 325.4 22.9 211 2-226 5-218 (260)
36 PRK07799 enoyl-CoA hydratase; 100.0 1.4E-47 3.1E-52 325.5 22.9 214 1-226 6-221 (263)
37 PRK07659 enoyl-CoA hydratase; 100.0 1.8E-47 3.8E-52 324.3 23.2 209 2-225 8-217 (260)
38 PRK05981 enoyl-CoA hydratase; 100.0 1.8E-47 4E-52 325.3 23.1 216 2-226 6-224 (266)
39 PRK07468 enoyl-CoA hydratase; 100.0 2E-47 4.4E-52 324.3 23.3 213 2-225 6-219 (262)
40 PLN02600 enoyl-CoA hydratase 100.0 1.8E-47 3.9E-52 322.6 22.7 206 7-226 2-209 (251)
41 PRK06213 enoyl-CoA hydratase; 100.0 7.2E-47 1.6E-51 315.0 25.6 215 1-231 4-218 (229)
42 PRK07110 polyketide biosynthes 100.0 3.6E-47 7.7E-52 320.5 23.6 213 2-231 7-220 (249)
43 PRK08252 enoyl-CoA hydratase; 100.0 2.9E-47 6.2E-52 322.0 23.0 206 2-225 5-211 (254)
44 PRK05864 enoyl-CoA hydratase; 100.0 3E-47 6.5E-52 325.5 23.1 216 2-225 11-230 (276)
45 PRK05870 enoyl-CoA hydratase; 100.0 1.8E-47 3.8E-52 322.4 21.1 209 2-226 5-214 (249)
46 PLN02888 enoyl-CoA hydratase 100.0 3.4E-47 7.4E-52 323.1 23.0 208 2-226 11-220 (265)
47 PLN03214 probable enoyl-CoA hy 100.0 6.8E-47 1.5E-51 323.1 24.9 218 2-231 13-234 (278)
48 PRK08260 enoyl-CoA hydratase; 100.0 3.5E-47 7.6E-52 328.0 23.3 215 2-225 6-234 (296)
49 PRK08259 enoyl-CoA hydratase; 100.0 2.7E-47 5.9E-52 322.0 21.8 208 2-225 5-213 (254)
50 PRK06494 enoyl-CoA hydratase; 100.0 3.9E-47 8.5E-52 322.0 22.5 207 2-225 6-214 (259)
51 PRK11423 methylmalonyl-CoA dec 100.0 5.5E-47 1.2E-51 321.3 23.2 208 2-225 6-216 (261)
52 PRK03580 carnitinyl-CoA dehydr 100.0 5E-47 1.1E-51 321.7 22.7 209 2-226 5-215 (261)
53 PRK06495 enoyl-CoA hydratase; 100.0 7.3E-47 1.6E-51 320.0 23.6 209 2-225 6-214 (257)
54 TIGR03189 dienoyl_CoA_hyt cycl 100.0 7E-47 1.5E-51 318.8 23.4 206 2-227 3-209 (251)
55 PRK07938 enoyl-CoA hydratase; 100.0 6.2E-47 1.3E-51 318.9 22.2 205 5-225 7-211 (249)
56 PRK07396 dihydroxynaphthoic ac 100.0 9E-47 1.9E-51 322.0 23.4 211 2-225 15-227 (273)
57 PRK06210 enoyl-CoA hydratase; 100.0 6.9E-47 1.5E-51 322.8 22.1 216 2-226 7-230 (272)
58 PRK08290 enoyl-CoA hydratase; 100.0 1.5E-46 3.2E-51 322.6 23.9 216 2-227 6-238 (288)
59 COG1024 CaiD Enoyl-CoA hydrata 100.0 1.2E-46 2.7E-51 318.8 22.6 213 2-227 7-220 (257)
60 PRK07509 enoyl-CoA hydratase; 100.0 2.2E-46 4.7E-51 318.2 23.8 213 2-227 5-222 (262)
61 PRK06072 enoyl-CoA hydratase; 100.0 4.4E-46 9.5E-51 313.7 24.4 206 1-227 1-207 (248)
62 PRK08272 enoyl-CoA hydratase; 100.0 7.6E-46 1.6E-50 320.5 24.5 216 2-228 12-247 (302)
63 PRK07854 enoyl-CoA hydratase; 100.0 8.5E-46 1.8E-50 310.9 22.8 200 1-224 1-201 (243)
64 PRK07827 enoyl-CoA hydratase; 100.0 1E-45 2.2E-50 313.6 22.7 213 2-228 8-221 (260)
65 PLN02921 naphthoate synthase 100.0 1.7E-45 3.8E-50 319.9 24.1 211 2-225 67-281 (327)
66 PRK07112 polyketide biosynthes 100.0 3.6E-45 7.8E-50 309.3 22.9 208 2-225 6-213 (255)
67 PRK08788 enoyl-CoA hydratase; 100.0 6.6E-45 1.4E-49 311.0 24.1 214 2-224 19-242 (287)
68 PRK08321 naphthoate synthase; 100.0 5.6E-45 1.2E-49 314.8 23.8 216 2-225 25-256 (302)
69 PRK12478 enoyl-CoA hydratase; 100.0 8.4E-45 1.8E-49 313.0 22.8 214 2-227 7-231 (298)
70 PRK05617 3-hydroxyisobutyryl-C 100.0 4.7E-45 1E-49 319.8 19.9 213 2-225 5-281 (342)
71 KOG1681 Enoyl-CoA isomerase [L 100.0 9.3E-46 2E-50 295.1 12.1 224 7-237 29-260 (292)
72 PLN02157 3-hydroxyisobutyryl-C 100.0 4.7E-44 1E-48 317.1 23.4 212 2-225 39-251 (401)
73 PLN02874 3-hydroxyisobutyryl-C 100.0 1.6E-43 3.5E-48 313.6 22.3 211 2-225 13-291 (379)
74 TIGR03200 dearomat_oah 6-oxocy 100.0 1.5E-42 3.3E-47 299.7 23.1 208 8-224 34-257 (360)
75 PLN02988 3-hydroxyisobutyryl-C 100.0 2.8E-42 6.1E-47 304.8 22.6 210 2-223 11-221 (381)
76 TIGR03222 benzo_boxC benzoyl-C 100.0 3.9E-42 8.4E-47 314.7 21.4 215 2-230 260-502 (546)
77 PRK08184 benzoyl-CoA-dihydrodi 100.0 4.6E-42 1E-46 315.1 21.2 215 3-231 265-507 (550)
78 PRK11730 fadB multifunctional 100.0 3.1E-41 6.6E-46 320.4 24.7 198 2-208 8-207 (715)
79 cd06558 crotonase-like Crotona 100.0 5.8E-41 1.3E-45 272.7 21.9 195 2-205 1-195 (195)
80 PLN02851 3-hydroxyisobutyryl-C 100.0 2E-40 4.4E-45 293.9 23.3 197 2-208 44-241 (407)
81 PRK11154 fadJ multifunctional 100.0 2.3E-40 5E-45 314.3 24.2 192 3-204 8-204 (708)
82 TIGR02440 FadJ fatty oxidation 100.0 2.1E-40 4.4E-45 314.1 23.2 190 4-203 5-198 (699)
83 KOG0016 Enoyl-CoA hydratase/is 100.0 1.8E-40 4E-45 270.1 19.1 220 2-231 9-233 (266)
84 TIGR02441 fa_ox_alpha_mit fatt 100.0 7.6E-40 1.6E-44 311.0 23.2 199 2-208 15-228 (737)
85 TIGR02437 FadB fatty oxidation 100.0 9.7E-40 2.1E-44 309.6 23.0 197 2-207 8-206 (714)
86 TIGR03222 benzo_boxC benzoyl-C 100.0 5E-39 1.1E-43 294.3 22.3 218 2-225 13-251 (546)
87 KOG1679 Enoyl-CoA hydratase [L 100.0 8.3E-40 1.8E-44 258.9 13.7 209 7-228 38-251 (291)
88 COG0447 MenB Dihydroxynaphthoi 100.0 1.1E-39 2.3E-44 258.6 11.0 215 2-227 20-238 (282)
89 PRK08184 benzoyl-CoA-dihydrodi 100.0 5.8E-38 1.3E-42 288.1 22.6 205 2-212 17-237 (550)
90 KOG1682 Enoyl-CoA isomerase [L 100.0 3.5E-34 7.6E-39 225.4 15.7 210 4-226 36-245 (287)
91 KOG1684 Enoyl-CoA hydratase [L 100.0 2.2E-30 4.7E-35 219.5 13.9 199 2-209 40-240 (401)
92 cd07020 Clp_protease_NfeD_1 No 99.9 6.2E-21 1.3E-25 154.2 14.8 152 10-197 1-172 (187)
93 cd07014 S49_SppA Signal peptid 99.8 2.2E-20 4.7E-25 149.7 13.5 143 29-196 22-174 (177)
94 cd07019 S49_SppA_1 Signal pept 99.7 1.7E-17 3.6E-22 136.6 9.1 104 9-135 1-104 (211)
95 cd07023 S49_Sppa_N_C Signal pe 99.7 5E-16 1.1E-20 127.6 11.5 96 10-135 2-100 (208)
96 cd00394 Clp_protease_like Case 99.7 1.6E-15 3.5E-20 119.6 12.3 135 26-187 8-161 (161)
97 cd07022 S49_Sppa_36K_type Sign 99.7 1.2E-15 2.7E-20 125.8 11.6 90 23-136 18-108 (214)
98 TIGR00706 SppA_dom signal pept 99.6 1.2E-14 2.5E-19 119.4 11.8 154 10-200 2-204 (207)
99 cd07016 S14_ClpP_1 Caseinolyti 99.6 1.1E-14 2.5E-19 114.7 10.3 129 29-187 15-160 (160)
100 TIGR00705 SppA_67K signal pept 99.6 1.2E-14 2.7E-19 135.6 12.2 173 6-208 306-524 (584)
101 cd07021 Clp_protease_NfeD_like 99.5 8.3E-13 1.8E-17 105.6 14.5 151 10-196 1-177 (178)
102 cd07018 S49_SppA_67K_type Sign 99.4 4.6E-13 9.9E-18 111.1 9.6 88 26-137 26-113 (222)
103 cd07015 Clp_protease_NfeD Nodu 99.3 3.4E-10 7.3E-15 89.8 15.0 152 10-196 1-171 (172)
104 PRK10949 protease 4; Provision 99.0 3.7E-09 8.1E-14 99.3 13.6 166 7-201 325-539 (618)
105 KOG1683 Hydroxyacyl-CoA dehydr 99.0 1.9E-10 4E-15 99.4 2.5 187 9-206 66-257 (380)
106 cd07013 S14_ClpP Caseinolytic 98.9 4.5E-08 9.8E-13 77.2 13.3 134 26-187 9-162 (162)
107 PRK11778 putative inner membra 98.9 3.5E-08 7.6E-13 85.7 12.7 164 7-200 89-295 (330)
108 PRK12319 acetyl-CoA carboxylas 98.8 4.6E-07 9.9E-12 76.3 17.8 138 24-190 77-214 (256)
109 PRK12553 ATP-dependent Clp pro 98.8 1.3E-07 2.9E-12 77.5 14.1 142 26-194 44-206 (207)
110 PRK00277 clpP ATP-dependent Cl 98.8 4.6E-08 9.9E-13 79.8 11.3 137 26-190 40-196 (200)
111 COG0616 SppA Periplasmic serin 98.8 4.5E-08 9.8E-13 85.3 10.8 164 9-201 60-272 (317)
112 PRK14512 ATP-dependent Clp pro 98.8 2.7E-07 5.8E-12 75.0 14.5 144 26-197 32-195 (197)
113 cd07017 S14_ClpP_2 Caseinolyti 98.8 2.2E-07 4.8E-12 74.0 12.5 142 12-187 11-171 (171)
114 CHL00198 accA acetyl-CoA carbo 98.7 3E-06 6.4E-11 73.2 18.3 138 24-190 133-270 (322)
115 PRK05724 acetyl-CoA carboxylas 98.7 8.4E-06 1.8E-10 70.5 20.2 137 25-190 131-267 (319)
116 TIGR00513 accA acetyl-CoA carb 98.6 1.2E-05 2.5E-10 69.5 19.5 138 24-190 130-267 (316)
117 PF00574 CLP_protease: Clp pro 98.6 3.4E-07 7.4E-12 73.5 9.6 144 12-190 18-181 (182)
118 PLN03230 acetyl-coenzyme A car 98.6 2E-05 4.3E-10 70.0 19.9 137 25-190 201-337 (431)
119 PLN03229 acetyl-coenzyme A car 98.5 2.4E-05 5.1E-10 73.7 20.5 137 25-190 222-358 (762)
120 CHL00028 clpP ATP-dependent Cl 98.4 7.1E-06 1.5E-10 66.8 13.3 138 26-190 39-196 (200)
121 TIGR00493 clpP ATP-dependent C 98.4 7.9E-06 1.7E-10 66.2 13.6 137 26-189 35-190 (191)
122 COG1030 NfeD Membrane-bound se 98.3 2.1E-05 4.6E-10 70.1 14.9 158 7-198 25-196 (436)
123 PF01343 Peptidase_S49: Peptid 98.3 2.5E-07 5.3E-12 72.4 1.5 103 97-201 3-150 (154)
124 PRK12551 ATP-dependent Clp pro 98.2 7.8E-05 1.7E-09 60.5 14.4 137 26-190 34-190 (196)
125 PRK14514 ATP-dependent Clp pro 98.2 4.9E-05 1.1E-09 62.7 13.2 137 26-190 63-219 (221)
126 TIGR00705 SppA_67K signal pept 98.2 2.4E-05 5.2E-10 73.7 12.6 84 30-136 77-160 (584)
127 TIGR03133 malonate_beta malona 98.2 0.0004 8.6E-09 59.1 18.8 140 23-192 72-219 (274)
128 PF01972 SDH_sah: Serine dehyd 98.2 5.1E-05 1.1E-09 63.8 13.1 96 24-149 70-165 (285)
129 PRK05654 acetyl-CoA carboxylas 98.1 0.00047 1E-08 59.3 18.5 165 7-209 119-284 (292)
130 TIGR03134 malonate_gamma malon 98.1 0.00046 1E-08 57.6 17.6 141 25-192 44-191 (238)
131 PRK07189 malonate decarboxylas 98.1 0.00058 1.3E-08 58.8 18.1 144 22-194 80-230 (301)
132 TIGR00515 accD acetyl-CoA carb 98.1 0.00066 1.4E-08 58.2 17.7 148 23-208 133-282 (285)
133 PRK14513 ATP-dependent Clp pro 98.0 0.0002 4.3E-09 58.3 13.5 138 26-190 36-192 (201)
134 TIGR01117 mmdA methylmalonyl-C 98.0 0.001 2.2E-08 61.7 18.8 175 7-208 313-498 (512)
135 PRK10949 protease 4; Provision 97.9 0.00027 5.9E-09 66.9 14.6 83 30-135 96-178 (618)
136 PF01039 Carboxyl_trans: Carbo 97.9 0.00052 1.1E-08 63.5 15.4 144 22-206 69-221 (493)
137 PLN02820 3-methylcrotonyl-CoA 97.8 0.0017 3.7E-08 60.9 16.9 147 22-205 141-294 (569)
138 CHL00174 accD acetyl-CoA carbo 97.8 0.0054 1.2E-07 52.7 18.1 146 22-204 145-292 (296)
139 TIGR01117 mmdA methylmalonyl-C 97.7 0.0015 3.3E-08 60.6 15.6 145 22-207 94-245 (512)
140 COG0740 ClpP Protease subunit 97.7 0.0016 3.4E-08 52.7 13.2 136 26-190 36-192 (200)
141 PRK12552 ATP-dependent Clp pro 97.7 0.0019 4.2E-08 53.2 14.0 146 26-190 49-214 (222)
142 COG4799 Acetyl-CoA carboxylase 97.4 0.0018 3.9E-08 59.5 10.9 145 22-207 103-254 (526)
143 COG0777 AccD Acetyl-CoA carbox 97.3 0.014 2.9E-07 49.2 13.6 150 23-209 135-285 (294)
144 COG0825 AccA Acetyl-CoA carbox 97.1 0.015 3.2E-07 49.4 12.7 134 27-190 132-266 (317)
145 PLN02820 3-methylcrotonyl-CoA 96.9 0.17 3.7E-06 47.7 19.0 158 25-209 381-558 (569)
146 PF01039 Carboxyl_trans: Carbo 96.8 0.021 4.4E-07 53.1 12.2 158 25-209 309-482 (493)
147 KOG0840 ATP-dependent Clp prot 95.3 0.19 4E-06 42.1 9.4 133 26-190 101-257 (275)
148 COG4799 Acetyl-CoA carboxylase 93.4 2.1 4.5E-05 39.9 12.6 167 13-208 328-511 (526)
149 PF06833 MdcE: Malonate decarb 91.9 5 0.00011 33.4 11.8 97 82-189 87-186 (234)
150 KOG0540 3-Methylcrotonyl-CoA c 91.4 7.1 0.00015 35.6 13.0 163 13-209 353-525 (536)
151 PF02601 Exonuc_VII_L: Exonucl 88.3 1.5 3.2E-05 38.3 6.4 79 28-130 54-135 (319)
152 TIGR00237 xseA exodeoxyribonuc 87.5 2 4.3E-05 39.3 6.9 79 27-130 168-247 (432)
153 COG1570 XseA Exonuclease VII, 83.3 3.5 7.5E-05 37.6 6.2 77 28-130 175-253 (440)
154 PRK00286 xseA exodeoxyribonucl 82.4 4.1 8.8E-05 37.3 6.5 78 28-130 175-252 (438)
155 COG0074 SucD Succinyl-CoA synt 76.6 11 0.00024 32.4 6.7 53 34-112 188-240 (293)
156 PF00549 Ligase_CoA: CoA-ligas 74.9 7.4 0.00016 30.3 5.0 63 32-113 59-121 (153)
157 TIGR02886 spore_II_AA anti-sig 74.6 22 0.00049 25.0 7.3 48 2-57 1-48 (106)
158 PF01740 STAS: STAS domain; I 72.9 15 0.00032 26.4 6.1 47 2-56 2-56 (117)
159 smart00250 PLEC Plectin repeat 72.9 2.7 5.9E-05 24.3 1.6 18 169-186 18-35 (38)
160 TIGR00377 ant_ant_sig anti-ant 70.4 19 0.00042 25.3 6.1 48 2-57 5-52 (108)
161 PF13607 Succ_CoA_lig: Succiny 68.3 20 0.00043 27.3 5.9 51 33-110 41-91 (138)
162 PTZ00187 succinyl-CoA syntheta 67.3 21 0.00045 31.3 6.6 54 33-112 211-264 (317)
163 PF00681 Plectin: Plectin repe 65.7 2.1 4.5E-05 25.9 0.1 21 168-188 17-37 (45)
164 PLN02522 ATP citrate (pro-S)-l 57.3 37 0.0008 32.5 6.8 52 34-112 210-262 (608)
165 PRK02228 V-type ATP synthase s 56.7 65 0.0014 22.9 6.6 49 32-109 30-79 (100)
166 COG0252 AnsB L-asparaginase/ar 55.6 81 0.0018 28.1 8.3 33 24-56 78-110 (351)
167 smart00870 Asparaginase Aspara 54.0 42 0.0009 29.4 6.2 32 25-56 56-87 (323)
168 cd07043 STAS_anti-anti-sigma_f 53.8 52 0.0011 22.4 5.7 46 3-57 2-47 (99)
169 PF01990 ATP-synt_F: ATP synth 53.1 60 0.0013 22.7 5.9 54 30-112 26-80 (95)
170 TIGR00520 asnASE_II L-asparagi 52.9 88 0.0019 27.8 8.1 33 24-56 83-115 (349)
171 PRK06091 membrane protein FdrA 50.1 55 0.0012 31.0 6.5 53 33-112 239-291 (555)
172 cd06844 STAS Sulphate Transpor 48.1 92 0.002 21.6 6.3 47 3-57 2-48 (100)
173 PF05677 DUF818: Chlamydia CHL 44.6 2.3E+02 0.005 25.3 10.9 73 36-124 161-236 (365)
174 COG1105 FruK Fructose-1-phosph 43.8 2.1E+02 0.0046 25.0 8.8 66 25-117 110-176 (310)
175 COG2840 Uncharacterized protei 43.6 62 0.0013 26.0 5.1 40 23-64 101-140 (184)
176 PRK11096 ansB L-asparaginase I 42.6 1.5E+02 0.0032 26.4 7.9 32 23-56 79-110 (347)
177 KOG3179 Predicted glutamine sy 41.7 57 0.0012 26.8 4.6 23 89-111 82-104 (245)
178 PRK04183 glutamyl-tRNA(Gln) am 40.5 92 0.002 28.5 6.4 32 25-57 132-163 (419)
179 cd04241 AAK_FomA-like AAK_FomA 38.4 1.2E+02 0.0025 25.3 6.4 49 1-59 1-49 (252)
180 PF06258 Mito_fiss_Elm1: Mitoc 37.9 2.7E+02 0.0059 24.2 9.8 108 22-131 121-238 (311)
181 TIGR02717 AcCoA-syn-alpha acet 36.7 1.2E+02 0.0026 27.9 6.6 54 32-112 189-242 (447)
182 cd07041 STAS_RsbR_RsbS_like Su 36.0 1.5E+02 0.0033 20.7 6.4 46 4-57 5-50 (109)
183 COG1618 Predicted nucleotide k 35.5 1.9E+02 0.0042 23.0 6.6 62 25-112 80-142 (179)
184 KOG0540 3-Methylcrotonyl-CoA c 33.3 25 0.00055 32.2 1.6 131 22-190 124-262 (536)
185 PF02456 Adeno_IVa2: Adenoviru 33.3 2.5E+02 0.0054 24.9 7.5 47 99-148 84-133 (369)
186 TIGR00519 asnASE_I L-asparagin 33.0 1.6E+02 0.0034 26.0 6.5 31 25-57 58-88 (336)
187 PLN00125 Succinyl-CoA ligase [ 32.3 1.4E+02 0.0031 25.9 6.0 13 100-112 233-245 (300)
188 COG0793 Prc Periplasmic protea 31.8 52 0.0011 29.9 3.4 96 10-121 205-308 (406)
189 COG0528 PyrH Uridylate kinase 31.2 1.5E+02 0.0033 24.8 5.7 36 23-60 22-57 (238)
190 PF00710 Asparaginase: Asparag 30.7 2.2E+02 0.0048 24.7 7.0 30 25-56 53-82 (313)
191 KOG3997 Major apurinic/apyrimi 30.5 1E+02 0.0022 25.6 4.5 42 23-68 151-192 (281)
192 COG2101 SPT15 TATA-box binding 30.0 1.4E+02 0.003 23.9 4.9 23 46-68 144-166 (185)
193 cd03225 ABC_cobalt_CbiO_domain 30.0 1E+02 0.0023 24.5 4.7 38 12-55 155-192 (211)
194 cd03255 ABC_MJ0796_Lo1CDE_FtsE 29.5 1.1E+02 0.0024 24.5 4.7 40 12-56 161-200 (218)
195 COG1126 GlnQ ABC-type polar am 29.4 95 0.0021 25.9 4.2 37 13-55 158-194 (240)
196 PRK05368 homoserine O-succinyl 27.6 3.1E+02 0.0068 23.8 7.3 33 23-57 77-109 (302)
197 cd03265 ABC_DrrA DrrA is the A 26.5 1.3E+02 0.0028 24.2 4.7 39 12-55 152-190 (220)
198 cd03297 ABC_ModC_molybdenum_tr 26.4 1.3E+02 0.0027 24.2 4.6 39 12-55 152-190 (214)
199 PRK10584 putative ABC transpor 26.4 1.3E+02 0.0028 24.4 4.6 40 12-56 167-206 (228)
200 cd03216 ABC_Carb_Monos_I This 26.1 1.4E+02 0.003 22.9 4.6 38 12-55 103-140 (163)
201 PRK09461 ansA cytoplasmic aspa 26.0 4.6E+02 0.0099 23.1 8.6 33 23-57 60-92 (335)
202 TIGR02211 LolD_lipo_ex lipopro 26.0 1.3E+02 0.0028 24.2 4.6 40 12-56 162-201 (221)
203 cd03267 ABC_NatA_like Similar 25.9 1.4E+02 0.0031 24.4 4.8 39 12-55 174-212 (236)
204 smart00463 SMR Small MutS-rela 25.9 1.5E+02 0.0032 19.7 4.2 32 28-59 12-43 (80)
205 TIGR01101 V_ATP_synt_F vacuola 25.3 2.8E+02 0.0061 20.4 6.3 50 31-110 45-94 (115)
206 PF05582 Peptidase_U57: YabG p 25.2 2.4E+02 0.0052 24.4 6.0 71 28-112 140-210 (287)
207 KOG0333 U5 snRNP-like RNA heli 25.1 1E+02 0.0023 29.1 4.0 32 99-130 349-381 (673)
208 PRK05665 amidotransferase; Pro 24.8 1.6E+02 0.0034 24.6 4.9 22 89-110 80-101 (240)
209 TIGR00960 3a0501s02 Type II (G 24.8 1.5E+02 0.0033 23.7 4.8 39 12-56 159-197 (216)
210 cd03293 ABC_NrtD_SsuB_transpor 24.5 1.5E+02 0.0033 23.8 4.7 39 12-55 152-190 (220)
211 TIGR01019 sucCoAalpha succinyl 24.5 2.1E+02 0.0046 24.6 5.7 23 33-56 185-207 (286)
212 cd03261 ABC_Org_Solvent_Resist 24.4 1.4E+02 0.003 24.3 4.5 39 12-55 157-195 (235)
213 cd03257 ABC_NikE_OppD_transpor 24.4 1.5E+02 0.0032 23.9 4.6 39 12-55 166-204 (228)
214 PRK05678 succinyl-CoA syntheta 24.3 2.3E+02 0.0049 24.5 5.8 22 33-55 187-208 (291)
215 COG4598 HisP ABC-type histidin 24.3 2E+02 0.0044 23.5 5.0 38 12-55 173-210 (256)
216 cd03259 ABC_Carb_Solutes_like 24.2 1.5E+02 0.0032 23.7 4.6 39 12-55 151-189 (213)
217 TIGR01277 thiQ thiamine ABC tr 24.2 1.6E+02 0.0034 23.6 4.7 39 12-55 149-187 (213)
218 TIGR01184 ntrCD nitrate transp 24.2 1.6E+02 0.0034 24.1 4.7 39 12-55 135-173 (230)
219 cd03298 ABC_ThiQ_thiamine_tran 24.1 1.5E+02 0.0032 23.6 4.6 39 12-55 149-187 (211)
220 TIGR02153 gatD_arch glutamyl-t 24.1 2.7E+02 0.006 25.3 6.6 32 25-57 119-150 (404)
221 COG2845 Uncharacterized protei 23.9 4.5E+02 0.0097 23.3 7.4 66 32-104 163-230 (354)
222 PRK03202 6-phosphofructokinase 23.7 4.9E+02 0.011 22.8 7.9 52 79-130 140-194 (320)
223 cd00411 Asparaginase Asparagin 23.6 2.4E+02 0.0051 24.7 5.9 31 25-57 59-89 (323)
224 PRK13507 formate--tetrahydrofo 23.6 5.9E+02 0.013 24.4 8.6 119 79-221 380-503 (587)
225 cd03235 ABC_Metallic_Cations A 23.5 1.6E+02 0.0034 23.5 4.6 38 12-55 153-190 (213)
226 PRK11629 lolD lipoprotein tran 23.2 1.6E+02 0.0035 23.9 4.7 39 12-55 166-204 (233)
227 KOG3040 Predicted sugar phosph 23.1 3.2E+02 0.007 22.7 6.1 32 87-118 125-165 (262)
228 PRK11247 ssuB aliphatic sulfon 23.1 1.6E+02 0.0034 24.7 4.6 39 12-55 154-192 (257)
229 cd03301 ABC_MalK_N The N-termi 23.1 1.6E+02 0.0035 23.4 4.6 39 12-55 151-189 (213)
230 KOG4391 Predicted alpha/beta h 23.0 22 0.00048 29.6 -0.5 106 97-209 144-258 (300)
231 cd03214 ABC_Iron-Siderophores_ 23.0 1.7E+02 0.0036 22.8 4.5 39 12-55 118-156 (180)
232 PRK11831 putative ABC transpor 22.8 1.6E+02 0.0035 24.7 4.6 40 12-56 164-203 (269)
233 PF11524 SeleniumBinding: Sele 22.4 51 0.0011 22.3 1.2 38 168-205 10-47 (81)
234 PF01738 DLH: Dienelactone hyd 22.3 1.7E+02 0.0037 23.3 4.6 41 84-124 77-119 (218)
235 PRK10908 cell division protein 22.3 1.8E+02 0.0039 23.4 4.7 38 12-55 158-195 (222)
236 cd01741 GATase1_1 Subgroup of 22.2 2.2E+02 0.0047 22.3 5.1 23 89-111 70-92 (188)
237 TIGR02323 CP_lyasePhnK phospho 22.2 1.6E+02 0.0036 24.2 4.6 40 12-56 169-208 (253)
238 TIGR02855 spore_yabG sporulati 22.1 3E+02 0.0064 23.7 5.9 71 28-112 139-209 (283)
239 TIGR03410 urea_trans_UrtE urea 22.1 1.8E+02 0.004 23.5 4.8 40 12-56 152-191 (230)
240 PRK09984 phosphonate/organopho 21.8 1.6E+02 0.0036 24.4 4.5 40 12-56 173-212 (262)
241 cd03258 ABC_MetN_methionine_tr 21.6 1.8E+02 0.0038 23.6 4.6 39 12-55 161-199 (233)
242 PRK15112 antimicrobial peptide 21.6 1.7E+02 0.0036 24.6 4.5 39 12-55 170-208 (267)
243 PRK01395 V-type ATP synthase s 21.5 3.1E+02 0.0068 19.6 6.7 50 32-111 32-81 (104)
244 PRK11248 tauB taurine transpor 21.5 1.7E+02 0.0037 24.3 4.5 39 12-55 149-187 (255)
245 TIGR02314 ABC_MetN D-methionin 21.4 1.6E+02 0.0035 26.0 4.5 39 13-56 162-200 (343)
246 KOG3985 Methylthioadenosine ph 21.4 2.1E+02 0.0046 24.0 4.7 52 5-64 130-181 (283)
247 PRK11300 livG leucine/isoleuci 21.4 1.9E+02 0.004 23.9 4.7 40 12-56 174-213 (255)
248 cd03226 ABC_cobalt_CbiO_domain 21.4 2E+02 0.0043 22.8 4.7 38 12-55 147-184 (205)
249 cd03256 ABC_PhnC_transporter A 21.2 1.7E+02 0.0037 23.8 4.5 39 12-55 165-203 (241)
250 cd07393 MPP_DR1119 Deinococcus 21.1 4.6E+02 0.01 21.4 7.4 31 23-56 17-50 (232)
251 cd03296 ABC_CysA_sulfate_impor 21.1 1.8E+02 0.0039 23.8 4.5 40 12-56 157-196 (239)
252 PRK15093 antimicrobial peptide 21.1 1.7E+02 0.0037 25.5 4.6 40 12-56 179-218 (330)
253 COG0412 Dienelactone hydrolase 21.1 1.6E+02 0.0035 24.4 4.2 39 86-124 93-133 (236)
254 cd03295 ABC_OpuCA_Osmoprotecti 21.0 1.7E+02 0.0037 23.9 4.4 40 12-56 156-195 (242)
255 TIGR02324 CP_lyasePhnL phospho 21.0 2E+02 0.0042 23.2 4.7 39 12-56 170-208 (224)
256 cd03300 ABC_PotA_N PotA is an 21.0 1.9E+02 0.0041 23.5 4.6 40 12-56 151-190 (232)
257 TIGR02315 ABC_phnC phosphonate 20.9 1.8E+02 0.0038 23.8 4.5 40 12-56 166-205 (243)
258 PF01087 GalP_UDP_transf: Gala 20.9 1.4E+02 0.0031 23.6 3.7 53 9-66 109-169 (183)
259 TIGR03608 L_ocin_972_ABC putat 20.9 2E+02 0.0043 22.7 4.7 39 12-56 155-193 (206)
260 PRK11701 phnK phosphonate C-P 20.7 1.8E+02 0.0039 24.1 4.5 40 12-56 172-211 (258)
261 cd03246 ABCC_Protease_Secretio 20.7 2E+02 0.0043 22.2 4.5 38 12-55 117-154 (173)
262 PRK10247 putative ABC transpor 20.7 1.9E+02 0.0041 23.4 4.5 41 12-57 158-198 (225)
263 cd03229 ABC_Class3 This class 20.5 2.1E+02 0.0045 22.2 4.6 39 12-55 121-159 (178)
264 PRK13540 cytochrome c biogenes 20.4 2.7E+02 0.0058 22.0 5.3 49 12-67 148-196 (200)
265 COG1131 CcmA ABC-type multidru 20.2 1.8E+02 0.0039 24.9 4.5 38 12-55 157-194 (293)
266 PF02590 SPOUT_MTase: Predicte 20.2 2.5E+02 0.0055 21.7 4.9 41 89-129 85-125 (155)
267 TIGR03864 PQQ_ABC_ATP ABC tran 20.0 2.1E+02 0.0044 23.4 4.7 41 12-57 153-193 (236)
No 1
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=5.9e-49 Score=329.11 Aligned_cols=236 Identities=64% Similarity=1.040 Sum_probs=204.2
Q ss_pred CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
|+.++++++|++|+||+| +.|+++.+++.+|.+++++++.|++++.+||++|.|++||+|.|++++... .....
T Consensus 1 ~~~~~~~~~v~~i~Lnrp---~~Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~---~~~~~ 74 (239)
T PLN02267 1 MCTLEKRGNLFILTLTGD---GEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAA---GSAPS 74 (239)
T ss_pred CceeEecCCEEEEEeCCC---CcCcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhcc---ccCHH
Confidence 789999999999999999 569999999999999999999998875488889999999999999986531 11122
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCH
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~ 160 (243)
....+...+++++.++.++||||||+|||+|+|||++++++||+||+++++++|++||.++|+++|++++.++++++| .
T Consensus 75 ~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG-~ 153 (239)
T PLN02267 75 RLHLMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIG-S 153 (239)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcC-h
Confidence 223344557788899999999999999999999999999999999998654799999999999558888889999999 8
Q ss_pred HHH-HHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhccchhhhh-
Q 041046 161 TAR-RDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLGLDIRAVV- 238 (243)
Q Consensus 161 ~~a-~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~~~~~~~~- 238 (243)
.++ ++++++|++++|+||+++||||+++++.+++.+++.++|+++++.+|.+.++..+|+.++++..+.+..+.+.-+
T Consensus 154 ~~a~~~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 233 (239)
T PLN02267 154 PAARRDVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKWNGEVYASIRKSLLPEVCGKLGLDEEVEES 233 (239)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHhcchhhhhhh
Confidence 888 699999999999999999999999986578999999999999999878999999999999999888776555443
Q ss_pred -ccCCC
Q 041046 239 -SNSKL 243 (243)
Q Consensus 239 -~~~~~ 243 (243)
+.+||
T Consensus 234 ~~~~~~ 239 (239)
T PLN02267 234 HTTSKL 239 (239)
T ss_pred hcccCC
Confidence 34443
No 2
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.2e-49 Score=336.79 Aligned_cols=213 Identities=22% Similarity=0.285 Sum_probs=194.0
Q ss_pred CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
+|.++++++|++|+||+|+ +.|++|.+++++|.+++++++.|++++ +||++|.|++||+|.|++++..... ..
T Consensus 12 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~----~~ 84 (266)
T PRK08139 12 LLLREDRDGVATLTLNRPQ--AFNALSEAMLAALQAALDAIAADPSVR-VVVLAAAGKAFCAGHDLKEMRAARG----LA 84 (266)
T ss_pred ceEEEeeCCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHHhcCCCee-EEEEecCCCcceeccCHHHHhcccc----hh
Confidence 3678899999999999996 789999999999999999999999999 9999999999999999998754211 22
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCH
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~ 160 (243)
...++...+.+++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++++.++++++| .
T Consensus 85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~~~~~l~r~vG-~ 161 (266)
T PRK08139 85 YFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADT-ARFAVPGVNIGL-FCSTPMVALSRNVP-R 161 (266)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCC-CEEeCcccCcCC-CCCccHHHHHHHhC-H
Confidence 33444556778899999999999999999999999999999999999988 899999999999 78888889999999 9
Q ss_pred HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~ 226 (243)
.++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 162 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 224 (266)
T PRK08139 162 KQAMEMLLTGEFIDAATAREWGLVNRVVPA-DALDAAVARLAAVIAAKS--PAAVRIGKEAFYRQA 224 (266)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCccEeeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998 899999999999999999 999999999997653
No 3
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=5.7e-49 Score=335.70 Aligned_cols=217 Identities=18% Similarity=0.212 Sum_probs=192.4
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||+|+ +.|++|.+|+.+|.++++.++.|++++ +||++|.|++||+|.|++++..... ......
T Consensus 10 i~~~~~~~va~itlnrp~--~~Nal~~~m~~el~~al~~~~~d~~vr-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~ 85 (275)
T PRK09120 10 VKVEVEDGIAWVTLNRPE--KRNAMSPTLNREMIDVLDALEFDDDAG-VLVLTGAGDAWSAGMDLKEYFRETD-AQPEIL 85 (275)
T ss_pred EEEEEECCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHHhCCCce-EEEEEcCCCceecCcCHHHHhhccc-cchhHH
Confidence 678899999999999997 889999999999999999999999999 9999999999999999998643211 111111
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
.......+++++.++.++||||||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~iG-~ 162 (275)
T PRK09120 86 QERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADE-AQFGLSEINWGI-PPGGGVSKAMADTVG-H 162 (275)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCC-cEecCCccccCC-CCCcchHHHHHHHcC-H
Confidence 2233334567888999999999999999999999999999999999988 899999999999 67776 679999999 9
Q ss_pred HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHH
Q 041046 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCG 228 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~ 228 (243)
.++++++++|++++|+||+++|||++|+++ +++.+++.+++++++..| |.++..+|+.++.....
T Consensus 163 ~~a~~llltg~~~~A~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~~ 227 (275)
T PRK09120 163 RDALYYIMTGETFTGRKAAEMGLVNESVPL-AQLRARTRELAAKLLEKN--PVVLRAAKDGFKRVREL 227 (275)
T ss_pred HHHHHHHhcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999998 899999999999999999 99999999999866433
No 4
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.2e-49 Score=333.84 Aligned_cols=215 Identities=25% Similarity=0.333 Sum_probs=192.4
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
|.++++++|++|+||+|+ +.|++|.+++.+|.++++.++.|++++ +||++|.| ++||+|.|++++..... .....
T Consensus 5 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~~~~ 80 (260)
T PRK05980 5 VLIEIRDGIALLTLNRPE--KLNALNYALIDRLLARLDAIEVDESVR-AVILTGAGDRAFSAGADIHEFSASVA-AGADV 80 (260)
T ss_pred EEEEEECCEEEEEECCcc--cccCCCHHHHHHHHHHHHHHhhCCCcE-EEEEEeCCCCceEcCcCHHHHhhhcc-ccchh
Confidence 678899999999999997 789999999999999999999999999 99999998 79999999998754211 11122
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+...+.+++.++.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 157 (260)
T PRK05980 81 ALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASER-ALFAKPEIRLGM-PPTFGGTQRLPRLAG- 157 (260)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCC-CEecCcccccCC-CCCchHhhHHHhhcC-
Confidence 23455556677888999999999999999999999999999999999987 899999999999 67766 689999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~ 226 (243)
..++++++++|++++|+||+++||||+|+++ +++.+++.++++++++.| |.++..+|+.++...
T Consensus 158 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~~~~~~ 221 (260)
T PRK05980 158 RKRALELLLTGDAFSAERALEIGLVNAVVPH-EELLPAARALARRIIRHS--PVAVAAILTAVTRGL 221 (260)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCCcccCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998 889999999999999998 999999999987653
No 5
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.2e-49 Score=334.59 Aligned_cols=218 Identities=22% Similarity=0.294 Sum_probs=194.0
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhccc---c---
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGS---R--- 75 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~---~--- 75 (243)
+.++++++|++|+||+|+ +.|++|.+++.+|.+++++++.|++++ +||++|.|++||+|.|++++..... .
T Consensus 8 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 84 (272)
T PRK06142 8 FTVELADHVAQVTLNRPG--KGNAMNPAFWSELPEIFRWLDADPEVR-AVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGL 84 (272)
T ss_pred EEEEecCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCceecccCHHHHhhhccccccccc
Confidence 567889999999999997 889999999999999999999999999 9999999999999999998754110 0
Q ss_pred cchHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHH
Q 041046 76 AGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFR 154 (243)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~ 154 (243)
..+......+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~ 162 (272)
T PRK06142 85 ARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASAD-AKFSVREVDLGM-VADVGSLQRLP 162 (272)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCC-CeecchhhhhCC-CCCchHHHHHH
Confidence 0112233445556788899999999999999999999999999999999999988 899999999999 67776 68999
Q ss_pred HHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046 155 AKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC 227 (243)
Q Consensus 155 ~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~ 227 (243)
+++| ..++++++++|++++|+||+++||||+|+++.+++.+++.++++++++.| |.++..+|+.++....
T Consensus 163 ~~~G-~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~--~~a~~~~K~~l~~~~~ 232 (272)
T PRK06142 163 RIIG-DGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKS--PLAVRGTKEVLDYMRD 232 (272)
T ss_pred HHhC-HHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhc
Confidence 9999 99999999999999999999999999999865789999999999999999 9999999999986643
No 6
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.4e-49 Score=331.25 Aligned_cols=211 Identities=23% Similarity=0.338 Sum_probs=191.0
Q ss_pred CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
+|.++++++|++|+||+|+ +.|++|.+++++|.+++++++.|++++ +||++|.|++||+|.|++++.... . ..
T Consensus 5 ~v~~~~~~~va~Itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~---~-~~ 77 (258)
T PRK06190 5 ILLVETHDRVRTLTLNRPE--ARNALSAALRRALFAALAEADADDDVD-VVVLTGADPAFCAGLDLKELGGDG---S-AY 77 (258)
T ss_pred eEEEEeeCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCCccCCcCHHHHhccc---c-hh
Confidence 4788999999999999997 789999999999999999999999999 999999999999999999876421 1 11
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
.. ...+.+++.++.++|||+||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 78 ~~---~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG- 151 (258)
T PRK06190 78 GA---QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASER-ARFADTHARVGI-LPGWGLSVRLPQKVG- 151 (258)
T ss_pred hH---HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCC-CEEECcccccCc-CCCccHHHHHHHHhC-
Confidence 11 234567888999999999999999999999999999999999988 899999999999 67776 689999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC 227 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~ 227 (243)
...+++++++|++++|+||+++||||+++++ +++.+++.+++++++..| |.+++.+|+.++....
T Consensus 152 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~ 216 (258)
T PRK06190 152 IGRARRMSLTGDFLDAADALRAGLVTEVVPH-DELLPRARRLAASIAGNN--PAAVRALKASYDDGAA 216 (258)
T ss_pred HHHHHHHHHhCCccCHHHHHHcCCCeEecCH-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999997 889999999999999999 9999999999986533
No 7
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.8e-49 Score=331.54 Aligned_cols=209 Identities=21% Similarity=0.276 Sum_probs=188.7
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||+|+ +.|++|.+++++|.+++++++.|++++ +||++|.|+.||+|.|++++... +. .+
T Consensus 6 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~---~~-~~- 77 (257)
T PRK05862 6 ILVETRGRVGLITLNRPK--ALNALNDALMDELGAALAAFDADEGIG-AIVITGSEKAFAAGADIKEMADL---SF-MD- 77 (257)
T ss_pred EEEEeeCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCee-EEEEECCCCceECCcChHhHhcc---ch-hH-
Confidence 678899999999999996 789999999999999999999999999 99999999999999999987542 11 11
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
.+...+.+++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus 78 --~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~ 152 (257)
T PRK05862 78 --VYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADT-AKFGQPEIKLGV-LPGMGGSQRLTRAVG-K 152 (257)
T ss_pred --HHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCC-CEEeCchhccCc-CCCccHHHHHHHHhC-H
Confidence 11223445778899999999999999999999999999999999988 899999999999 78876 689999999 9
Q ss_pred HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~ 226 (243)
.++++++++|++++|+||+++||||+|+++ +++.+++.++++++++.| +.++..+|+.++...
T Consensus 153 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~ 215 (257)
T PRK05862 153 AKAMDLCLTGRMMDAAEAERAGLVSRVVPA-DKLLDEALAAATTIASFS--LPAVMMAKEAVNRAY 215 (257)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCCCEeeCH-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 899999999999999998 999999999997654
No 8
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-48 Score=331.72 Aligned_cols=213 Identities=23% Similarity=0.368 Sum_probs=190.7
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||+|+ +.|++|.+++++|.+++++++.|++++ +||++|.|++||+|.|++++..... ......
T Consensus 6 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~ 81 (262)
T PRK05995 6 LEIEQRGQVATVTLNRPD--VRNAFNETVIAELTAAFRALDADDSVR-AVVLAGAGKAFCAGADLNWMKKMAG-YSDDEN 81 (262)
T ss_pred EEEEeeCCEEEEEEcCcc--cccCCCHHHHHHHHHHHHHHhcCCCeE-EEEEECCCCccccCcCHHHHhhhcc-cCchhh
Confidence 678899999999999997 789999999999999999999999999 9999999999999999998754211 010111
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~ 161 (243)
......+.+++.++.++||||||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|++|+.++++++| ..
T Consensus 82 -~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~l~~~vg-~~ 157 (262)
T PRK05995 82 -RADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADH-AVFCLSEVRLGL-IPATISPYVIRAMG-ER 157 (262)
T ss_pred -hhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCC-CEEeCccccccc-CccchHHHHHHHhC-HH
Confidence 112344677888999999999999999999999999999999999988 899999999999 78888778999999 99
Q ss_pred HHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 162 ARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
.+++++++|++++|+||+++||||+|+++ +++.+++.++++++++.| +.++..+|+.++..
T Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 218 (262)
T PRK05995 158 AARRYFLTAERFDAAEALRLGLVHEVVPA-EALDAKVDELLAALVANS--PQAVRAGKRLVRDV 218 (262)
T ss_pred HHHHHHHcCCccCHHHHHHcCCCCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 99999999999999999999999999987 889999999999999998 99999999999765
No 9
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=1.3e-48 Score=330.39 Aligned_cols=209 Identities=22% Similarity=0.339 Sum_probs=189.5
Q ss_pred CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
+|.++++++|++|+||+|+ +.|++|.+++++|.+++++++.|++++ +||++|.|++||+|.|++++... ...
T Consensus 3 ~i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~~~~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~----~~~- 74 (255)
T PRK09674 3 ELLVSRQQRVLLLTLNRPE--ARNALNNALLTQLVNELEAAATDTSIG-VCVITGNARFFAAGADLNEMAEK----DLA- 74 (255)
T ss_pred eEEEEeECCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhhCCCcE-EEEEECCCCceecccChHhHhcc----chh-
Confidence 3678899999999999996 789999999999999999999999999 99999999999999999987531 101
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
..+.....+++.++.++||||||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 75 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~ig- 149 (255)
T PRK09674 75 --ATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGEN-ARFGLPEITLGI-MPGAGGTQRLIRSVG- 149 (255)
T ss_pred --hhHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCC-CEEeCchhhcCC-CCCccHHHHHHHHhC-
Confidence 112234566888999999999999999999999999999999999988 899999999999 67776 689999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
..++++++++|+.++|+||+++||||+|+++ +++.+++.+++++++..| |.++..+|+.++..
T Consensus 150 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 212 (255)
T PRK09674 150 KSLASQMVLTGESITAQQAQQAGLVSEVFPP-ELTLERALQLASKIARHS--PLALRAAKQALRQS 212 (255)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCcEecCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998 889999999999999999 99999999998764
No 10
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-48 Score=329.39 Aligned_cols=209 Identities=18% Similarity=0.242 Sum_probs=188.5
Q ss_pred CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
+|.++++++|++|+||+|+ +.|++|.+++.+|.+++++++ ++++ +||+||.|++||+|.|++++... . ..
T Consensus 3 ~v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~--~~vr-~vvltg~g~~F~aG~Dl~~~~~~-~----~~ 72 (255)
T PRK08150 3 LVSYELDGGVATIGLNRPA--KRNALNDGLIAALRAAFARLP--EGVR-AVVLHGEGDHFCAGLDLSELRER-D----AG 72 (255)
T ss_pred eEEEEeeCCEEEEEEcCCc--cccCCCHHHHHHHHHHHHHhh--cCCe-EEEEECCCCceecCcCHHHHhhc-c----ch
Confidence 4678999999999999997 789999999999999999998 7899 99999999999999999987542 1 11
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+...+.+++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 73 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~iG- 149 (255)
T PRK08150 73 EGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADES-TYFALPEGQRGI-FVGGGGSVRVPRLIG- 149 (255)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCC-CEEeccccccCC-CCCccHHHHHHHHhC-
Confidence 11233455677888999999999999999999999999999999999988 899999999999 66665 689999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
..++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..| |.++..+|+.++..
T Consensus 150 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 212 (255)
T PRK08150 150 VARMTDMMLTGRVYDAQEGERLGLAQYLVPA-GEALDKAMELARRIAQNA--PLTNFAVLNALPRI 212 (255)
T ss_pred HHHHHHHHHcCCcCCHHHHHHcCCccEeeCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998 889999999999999999 99999999999765
No 11
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-48 Score=329.97 Aligned_cols=214 Identities=21% Similarity=0.260 Sum_probs=192.1
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
|.++++++|++|+||+|+ +.|++|.+++++|.+++++++.|++++ +||++|.| ++||+|.|++++..... ..
T Consensus 10 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVltg~g~~~F~aG~Dl~~~~~~~~----~~ 82 (262)
T PRK06144 10 LLLEVRGGIARITFNRPA--ARNAMTWAMYEGLAEICEAIAADPSIR-AVVLRGAGDKAFVAGTDIAQFRAFST----AE 82 (262)
T ss_pred eEEEeeCCEEEEEecCCc--ccCCCCHHHHHHHHHHHHHHhcCCCce-EEEEecCCCCceecCcCHHHHhhccc----hh
Confidence 678899999999999997 789999999999999999999999999 99999998 79999999998754211 11
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccc-cCCCCchhh-HHHHHHHhC
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVD-IGATLPDYF-TALFRAKVG 158 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~-~Gl~~p~~g-~~~l~~~~g 158 (243)
....+...+.+++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||.+ +|+ +|++| ++++++++|
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~~G~-~p~~g~~~~l~~~vG 160 (262)
T PRK06144 83 DAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPS-ARFGFPIARTLGN-CLSMSNLARLVALLG 160 (262)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCC-CEeechhHHhccC-CCCccHHHHHHHHhC
Confidence 12234455678888999999999999999999999999999999999988 899999996 999 66665 689999999
Q ss_pred CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHH
Q 041046 159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCG 228 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~ 228 (243)
...+++++++|++++|+||+++||||+|+++ +++.+++.++++++++.| |.++..+|+.++.....
T Consensus 161 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~i~~~~--~~a~~~~K~~l~~~~~~ 226 (262)
T PRK06144 161 -AARVKDMLFTARLLEAEEALAAGLVNEVVED-AALDARADALAELLAAHA--PLTLRATKEALRRLRRE 226 (262)
T ss_pred -HHHHHHHHHcCCCcCHHHHHHcCCcCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999998 899999999999999999 99999999999876433
No 12
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-48 Score=328.67 Aligned_cols=217 Identities=23% Similarity=0.340 Sum_probs=193.5
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+|+ +.|++|.+++.+|.++++.++.|++++ +||++|.|++||+|.|++++..... ..+...
T Consensus 4 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~ 79 (255)
T PRK07260 4 IIYEVEDDLATLTLNRPE--VSNGFNIPMCQEILEALRLAEEDPSVR-FLLINANGKVFSVGGDLVEMKRAVD-EDDVQS 79 (255)
T ss_pred eEEEEECCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCcccccCHHHHHhhcc-ccchhh
Confidence 578889999999999997 789999999999999999999999999 9999999999999999998764211 111222
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+...+++++.++.++||||||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vg-~ 156 (255)
T PRK07260 80 LVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTK-TKFIQAFVGVGL-APDAGGLFLLTRAIG-L 156 (255)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCC-CEEechHhhcCC-CCCCchhhhhHHhhC-H
Confidence 2334455678888999999999999999999999999999999999988 899999999999 67766 679999999 9
Q ss_pred HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHH
Q 041046 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCG 228 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~ 228 (243)
..+++|+++|++++|+||+++||||+++++ +++.+.+.++++++++.| +.++..+|+.++.....
T Consensus 157 ~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~~~ 221 (255)
T PRK07260 157 NRATHLAMTGEALTAEKALEYGFVYRVAES-EKLEKTCEQLLKKLRRGS--SNSYAAIKSLVWESFFK 221 (255)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCcceecCH-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999997 889999999999999998 99999999999876433
No 13
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-48 Score=329.74 Aligned_cols=211 Identities=26% Similarity=0.318 Sum_probs=185.7
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||+|+ +.|++|.+++++|.+++++++.|++++ +||++|.|++||+|.|++++..... +. .
T Consensus 1 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-vvvl~g~g~~F~aG~Dl~~~~~~~~-~~-~-- 73 (255)
T PRK06563 1 VSRERRGHVLLIGLDRPA--KRNAFDSAMLDDLALALGEYEADDELR-VAVLFAHGEHFTAGLDLADVAPKLA-AG-G-- 73 (255)
T ss_pred CeEEEECCEEEEEECCcc--cccCCCHHHHHHHHHHHHHHhhCCCcE-EEEEECCCCCCcCCcCHHHHhhccc-cc-h--
Confidence 578899999999999997 789999999999999999999999999 9999999999999999998754211 11 1
Q ss_pred HHHHHH-hHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046 82 LLYMVE-SFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS 159 (243)
Q Consensus 82 ~~~~~~-~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
.++.. ....+...+.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 74 -~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 149 (255)
T PRK06563 74 -FPFPEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADN-TRFAQLEVQRGI-LPFGGATLRFPQAAG- 149 (255)
T ss_pred -hhhhhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCC-CEEeChhhhcCC-CCCccHHHHHHHHhh-
Confidence 11111 1222333578999999999999999999999999999999988 899999999999 67776 679999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~ 226 (243)
...+++++++|++++|+||+++||||+|+++ +++.+++.++++++++.| |.+++.+|+.++...
T Consensus 150 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~ 213 (255)
T PRK06563 150 WGNAMRYLLTGDEFDAQEALRLGLVQEVVPP-GEQLERAIELAERIARAA--PLGVQATLASARAAV 213 (255)
T ss_pred HHHHHHHHHcCCCcCHHHHHHcCCCcEeeCH-HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998 889999999999999998 999999999987653
No 14
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=2.5e-48 Score=328.78 Aligned_cols=210 Identities=22% Similarity=0.324 Sum_probs=189.1
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
|.++++++|++|+||+|+ +.|++|.+|+.+|.++++.++.|++++ +||++|.| ++||+|.|++++... . +. .
T Consensus 4 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVl~g~g~~~F~aG~Dl~~~~~~-~-~~-~- 76 (256)
T TIGR03210 4 ILYEKRNGIAWIMINRPA--KMNAFRGQTCDELIHALKDAGYDRQIG-VIVLAGAGDKAFCTGGDQSTHDGG-Y-DG-R- 76 (256)
T ss_pred eEEEeeCCEEEEEEcCCc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEecCCCCceecCcChHHHhcc-c-cc-h-
Confidence 678899999999999997 889999999999999999999999999 99999998 799999999987431 1 11 1
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCH
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~ 160 (243)
..+...+.+++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+.+|++|++++++++| .
T Consensus 77 --~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~G~~~~~~~~~~l~~~vG-~ 152 (256)
T TIGR03210 77 --GTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEK-AQFGQVGPKVGSVDPGYGTALLARVVG-E 152 (256)
T ss_pred --hHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCC-CEEecccccccccCCccHHHHHHHHhC-H
Confidence 112233567888999999999999999999999999999999999988 899999999999446667889999999 9
Q ss_pred HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
.++++++++|++++|+||+++||||+|+++ +++.+++.++++++++.| |.+++.+|+.++..
T Consensus 153 ~~A~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~ia~~~--~~a~~~~K~~l~~~ 214 (256)
T TIGR03210 153 KKAREIWYLCRRYTAQEALAMGLVNAVVPH-DQLDAEVQKWCDEIVEKS--PTAIAIAKRSFNMD 214 (256)
T ss_pred HHHHHHHHhCCCcCHHHHHHcCCceeeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 899999999999999999 99999999999765
No 15
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=3.6e-48 Score=327.95 Aligned_cols=213 Identities=24% Similarity=0.301 Sum_probs=188.6
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||+|+ +.|++|.+++.+|.++++++++|+ ++ +||++|.|++||+|.|++++..... ...+.
T Consensus 1 ~~~e~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~-v~-~vVltg~g~~F~aG~Dl~~~~~~~~--~~~~~ 74 (256)
T TIGR02280 1 ILSALEAGVARLTLNRPD--KLNSFTAEMHLELREALERVERDD-AR-ALMLTGAGRGFCAGQDLSERNPTPG--GAPDL 74 (256)
T ss_pred CeEEEECCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCC-cE-EEEEECCCCCcccCcCHHHHhhccc--cchhH
Confidence 568899999999999997 889999999999999999999998 99 9999999999999999998764211 11111
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+...+..++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 75 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~-a~f~~pe~~lG~-~p~~g~~~~l~~~vG-~ 151 (256)
T TIGR02280 75 GRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAES-ARFIQAFAKIGL-IPDSGGTWSLPRLVG-R 151 (256)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCC-CEEeChhhhcCC-CCCccHHHHHHHHhC-H
Confidence 1222233466788899999999999999999999999999999999988 899999999999 67665 679999999 9
Q ss_pred HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~ 226 (243)
.++++|+++|++++|+||+++||||+|+++ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 152 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~~~~~~K~~l~~~~ 214 (256)
T TIGR02280 152 ARAMGLAMLGEKLDARTAASWGLIWQVVDD-AALMDEAQALAVHLAAQP--TRGLALTKRAIQAAA 214 (256)
T ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceeeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhh
Confidence 999999999999999999999999999998 899999999999999999 999999999997653
No 16
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.7e-48 Score=328.43 Aligned_cols=211 Identities=23% Similarity=0.302 Sum_probs=190.5
Q ss_pred ceee-EeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchH
Q 041046 2 CTLE-KHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGAR 79 (243)
Q Consensus 2 i~~~-~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~ 79 (243)
+.++ .+++|++|+||+|+ +.|++|.+++.+|.+++++++.|++++ +||+||.| ++||+|.|++++... . .
T Consensus 8 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~-~----~ 79 (256)
T PRK06143 8 AGVTRDDRGVATLTIRNAG--SLNILGTPVILALTQALRWLAADPDVR-VLVLRGAGEKAFIGGADIKEMATL-D----Q 79 (256)
T ss_pred ceeeecCCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhcCCCcE-EEEEEeCCCCcccCCcCHHHHhhc-C----h
Confidence 3455 46789999999997 889999999999999999999999999 99999998 799999999987542 1 2
Q ss_pred HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCC
Q 041046 80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGS 159 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~ 159 (243)
.....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|.++++++++++|
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~-p~~~~~~~l~~~iG- 156 (256)
T PRK06143 80 ASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHD-AQFGMPEVRVGI-PSVIHAALLPRLIG- 156 (256)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCC-CEEeCCccccCC-CCccHHHHHHHhcC-
Confidence 223345566788899999999999999999999999999999999999988 899999999998 66667889999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~ 226 (243)
..++++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..| |.++..+|+.++...
T Consensus 157 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 220 (256)
T PRK06143 157 WARTRWLLLTGETIDAAQALAWGLVDRVVPL-AELDAAVERLAASLAGCG--PQALRQQKRLLREWE 220 (256)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCcCeecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999998 899999999999999999 999999999988753
No 17
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-48 Score=331.36 Aligned_cols=216 Identities=19% Similarity=0.205 Sum_probs=192.1
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+|+ +.|+++.+++.+|.+++++++.|++++ +||++|.|++||+|.|++++..... +.+...
T Consensus 19 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~eL~~~l~~~~~d~~vr-~vVltg~g~~FsaG~Dl~~~~~~~~-~~~~~~ 94 (277)
T PRK08258 19 FLWEVDDGVATITLNRPE--RKNPLTFESYAELRDLFRELVYADDVK-AVVLTGAGGNFCSGGDVHEIIGPLT-KMDMPE 94 (277)
T ss_pred eEEEEECCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEeCCCCCcccccCHHHHhcccc-ccChhH
Confidence 567889999999999997 889999999999999999999999999 9999999999999999998743111 111222
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+...+.+++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+++|++| ++++++++| .
T Consensus 95 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl~p~~~g~~~~l~~~vG-~ 172 (277)
T PRK08258 95 LLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPS-AKTAFLFTRVGLAGADMGACALLPRIIG-Q 172 (277)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCC-CEEeccccccCcCCCCchHHHHHHHHhC-H
Confidence 3345555678899999999999999999999999999999999999988 899999999999334555 689999999 9
Q ss_pred HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~ 226 (243)
.++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..| +.+++.+|+.++...
T Consensus 173 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 235 (277)
T PRK08258 173 GRASELLYTGRSMSAEEGERWGFFNRLVEP-EELLAEAQALARRLAAGP--TFAHGMTKTMLHQEW 235 (277)
T ss_pred HHHHHHHHcCCCCCHHHHHHcCCCcEecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhc
Confidence 999999999999999999999999999998 889999999999999999 999999999998653
No 18
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=2e-48 Score=330.83 Aligned_cols=216 Identities=22% Similarity=0.321 Sum_probs=190.4
Q ss_pred ceeeEe-CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046 2 CTLEKH-GDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 2 i~~~~~-~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
|.++++ ++|++|+||+|+ +.|++|.+|+.+|.++++.++.|++++ +||++|.|++||+|.|++++..... .+..
T Consensus 7 l~~~~~~~~v~~itlnrp~--~~Nal~~~~~~el~~al~~~~~d~~vr-~vVl~g~g~~F~aG~Dl~~~~~~~~--~~~~ 81 (265)
T PRK05674 7 IELIRDPRGFATLWLSRAD--KNNAFNAQMIRELILALDQVQSDASLR-FLLLRGRGRHFSAGADLAWMQQSAD--LDYN 81 (265)
T ss_pred EEEEEcCCCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCCcccCcCHHHHhhccc--ccch
Confidence 567775 789999999997 889999999999999999999999999 9999999999999999998753211 0011
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCH
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~ 160 (243)
........+.+++..+.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++|+.++++++| .
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gi-~p~~~~~~l~~~vG-~ 158 (265)
T PRK05674 82 TNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADD-AQFCLSEVRIGL-APAVISPFVVKAIG-E 158 (265)
T ss_pred hhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCC-CEEeCcccccCC-CcchhHHHHHHHhC-H
Confidence 11112234567888999999999999999999999999999999999988 899999999999 78888778999999 9
Q ss_pred HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHH
Q 041046 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCG 228 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~ 228 (243)
.++++++++|+.++|+||+++||||+|++. +++.+++.++++++++.| |.+++.+|+.++.....
T Consensus 159 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~~ 223 (265)
T PRK05674 159 RAARRYALTAERFDGRRARELGLLAESYPA-AELEAQVEAWIANLLLNS--PQALRASKDLLREVGDG 223 (265)
T ss_pred HHHHHHHHhCcccCHHHHHHCCCcceecCH-HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999997 899999999999999999 99999999998766433
No 19
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-48 Score=328.24 Aligned_cols=210 Identities=20% Similarity=0.364 Sum_probs=190.5
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||+| +.|++|.+++++|.+++++++.|++++ +||++|.|++||+|.|++++..... ...
T Consensus 4 i~~~~~~~v~~itl~rp---~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~~----~~~ 75 (257)
T PRK07658 4 LSVRVEDHVAVITLNHP---PANALSSQVLHELSELLDQVEKDDNVR-VVVIHGEGRFFSAGADIKEFTSVTE----AEQ 75 (257)
T ss_pred EEEEeeCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCceEeCcCHHHHhccCc----hhh
Confidence 67889999999999999 459999999999999999999999999 9999999999999999998754211 122
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+.....+++.++.++|||+||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 76 ~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~ 152 (257)
T PRK07658 76 ATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATES-AKLGLPELNLGL-IPGFAGTQRLPRYVG-K 152 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCC-CcccCcccccCC-CCCCcHHHHHHHHhC-H
Confidence 3344455678899999999999999999999999999999999999988 899999999999 78876 689999999 9
Q ss_pred HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
.++++++++|++++|+||+++||||+|+++ +++.+++.++++++++.| |.++..+|+.++..
T Consensus 153 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 214 (257)
T PRK07658 153 AKALEMMLTSEPITGAEALKWGLVNGVFPE-ETLLDDAKKLAKKIAGKS--PATTRAVLELLQTT 214 (257)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCCcCeecCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence 999999999999999999999999999987 899999999999999998 99999999999765
No 20
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-48 Score=329.83 Aligned_cols=217 Identities=23% Similarity=0.299 Sum_probs=191.2
Q ss_pred CceeeEeCCEEEEEEcCCCCCCCCCCCH-HHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccc-c-c
Q 041046 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGP-SAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSR-A-G 77 (243)
Q Consensus 1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~-~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~-~-~ 77 (243)
+|.++++++|++|+||+|+ +.|++|. +++++|.+++++++.|++++ +||++|.|++||+|.|++++...... . .
T Consensus 4 ~v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~~l~~~l~~~~~d~~vr-~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (266)
T PRK09245 4 FLLVERDGHIVTLTMNRPE--TRNALSDNDAVDALVAACAAINADRSVR-AVILTGAGTAFSSGGNVKDMRARVGAFGGS 80 (266)
T ss_pred ceEEEEECCEEEEEECCcc--cccCCChHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCcccCcCHHHHhhcccccccc
Confidence 3688999999999999997 7899995 99999999999999999999 99999999999999999987542110 0 0
Q ss_pred hHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHH
Q 041046 78 ARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAK 156 (243)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~ 156 (243)
.......+...+.+++.++.++|||+||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|++| +++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~ 158 (266)
T PRK09245 81 PADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASET-ARFAESFVKLGL-IPGDGGAWLLPRI 158 (266)
T ss_pred chhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCC-CEEcccccccCc-CCCcchhhhHHHH
Confidence 01111223344567888999999999999999999999999999999999988 899999999999 67776 6799999
Q ss_pred hCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046 157 VGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL 226 (243)
Q Consensus 157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~ 226 (243)
+| ..++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..| +.+++.+|+.++...
T Consensus 159 vG-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~ 224 (266)
T PRK09245 159 IG-MARAAEMAFTGDAIDAATALEWGLVSRVVPA-DQLLPAARALAERIAANP--PHALRLTKRLLREGQ 224 (266)
T ss_pred hh-HHHHHHHHHcCCCcCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhh
Confidence 99 9999999999999999999999999999997 889999999999999999 999999999998653
No 21
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=6.1e-48 Score=319.60 Aligned_cols=204 Identities=21% Similarity=0.273 Sum_probs=184.5
Q ss_pred eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHH
Q 041046 7 HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMV 86 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~ 86 (243)
+++|++|+||+| +.|++|.+++.+|.+++++++.|++++ +||+||.|++||+|.|++++... . ........
T Consensus 15 ~~~i~~itlnrp---~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~-~----~~~~~~~~ 85 (222)
T PRK05869 15 DAGLATLLLSRP---PTNALTRQVYREIVAAANELGRRDDVA-AVILYGGHEIFSAGDDMPELRTL-S----AQEADTAA 85 (222)
T ss_pred cCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCcCcCcCHHHHhcc-C----hhhHHHHH
Confidence 488999999999 569999999999999999999999999 99999999999999999987642 1 11122233
Q ss_pred HhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCHHHHHH
Q 041046 87 ESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSATARRD 165 (243)
Q Consensus 87 ~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~a~~ 165 (243)
..+++++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| +.++++++| ...+++
T Consensus 86 ~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~ig-~~~a~~ 162 (222)
T PRK05869 86 RVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDN-VKFGATEILAGL-APSGDGMARLTRAAG-PSRAKE 162 (222)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCC-CEEcCchhccCC-CCCccHHHHHHHHhC-HHHHHH
Confidence 45678899999999999999999999999999999999999987 899999999999 66665 679999999 999999
Q ss_pred HHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
++++|++++|+||+++||||+++++ +++.+++.+++++++..| |.++..+|+.++..
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~ia~~~--~~a~~~~K~~~~~~ 219 (222)
T PRK05869 163 LVFSGRFFDAEEALALGLIDEMVAP-DDVYDAAAAWARRFLDGP--PHALAAAKAGISDV 219 (222)
T ss_pred HHHcCCCcCHHHHHHCCCCCEeeCc-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHH
Confidence 9999999999999999999999998 899999999999999999 99999999998765
No 22
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.9e-48 Score=327.72 Aligned_cols=215 Identities=27% Similarity=0.340 Sum_probs=189.2
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||+|+ +.|++|.+++.+|.+++++++ |++++ +||++|.|++||+|.|++++..... ......
T Consensus 6 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~~~~~~-d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~ 80 (262)
T PRK08140 6 ILLAIEAGVATLTLNRPD--KLNSFTREMHRELREALDQVE-DDGAR-ALLLTGAGRGFCAGQDLADRDVTPG-GAMPDL 80 (262)
T ss_pred EEEEeECCEEEEEecCCc--ccCCCCHHHHHHHHHHHHHhc-CCCce-EEEEECCCCCcccCcChHHHhcccc-ccchhh
Confidence 578899999999999997 889999999999999999999 99999 9999999999999999998753210 000111
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+...+..++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 81 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~vG-~ 157 (262)
T PRK08140 81 GESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARS-ASFIQAFVKIGL-VPDSGGTWFLPRLVG-M 157 (262)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCC-CEEeccccccCC-CCCccHHHHHHHHhC-H
Confidence 1222233456888999999999999999999999999999999999988 899999999999 67765 689999999 9
Q ss_pred HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC 227 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~ 227 (243)
.++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..| |.++..+|+.++....
T Consensus 158 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~ia~~~--~~a~~~~K~~l~~~~~ 221 (262)
T PRK08140 158 ARALGLALLGEKLSAEQAEQWGLIWRVVDD-AALADEAQQLAAHLATQP--TRGLALIKQAMNASAT 221 (262)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCCccEeeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999998 789999999999999998 9999999999986543
No 23
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.9e-48 Score=327.88 Aligned_cols=214 Identities=24% Similarity=0.359 Sum_probs=193.1
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+|+ +.|++|.+++.+|.+++++++.|++++ +||++|.|+.||+|.|++++..... .....
T Consensus 5 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVl~g~g~~F~~G~Dl~~~~~~~~--~~~~~ 79 (260)
T PRK07511 5 LLSRREGSTLVLTLSNPG--ARNALHPDMYAAGIEALNTAERDPSIR-AVVLTGAGGFFCAGGNLNRLLENRA--KPPSV 79 (260)
T ss_pred eEEEeECCEEEEEECCcc--cccCCCHHHHHHHHHHHHHhccCCCeE-EEEEECCCCCcccCcCHHHHhhccc--ccchh
Confidence 578899999999999997 789999999999999999999999999 9999999999999999998754211 11223
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+...+++++.++.++||||||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vg-~ 156 (260)
T PRK07511 80 QAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARD-AKFVMAYVKVGL-TPDGGGSWFLARALP-R 156 (260)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCC-CEEeccccccCc-CCCchHHHHHHHHhC-H
Confidence 3445566788999999999999999999999999999999999999988 899999999999 67776 689999999 9
Q ss_pred HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~ 226 (243)
+.+++|+++|++++|+||+++||||+|+++ +++.+++.++++++++.| |.++..+|+.++...
T Consensus 157 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~l~~~~--~~~~~~~K~~l~~~~ 219 (260)
T PRK07511 157 QLATELLLEGKPISAERLHALGVVNRLAEP-GQALAEALALADQLAAGS--PNALARIKSLIADAP 219 (260)
T ss_pred HHHHHHHHhCCCCCHHHHHHcCCccEeeCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhh
Confidence 999999999999999999999999999998 889999999999999998 999999999987653
No 24
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.6e-48 Score=326.61 Aligned_cols=209 Identities=25% Similarity=0.360 Sum_probs=188.8
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
|.++++++|++|+||+| +.|++|.+++.+|.++++.++.|++++ +||++|.| ++||+|.|++++... + ..
T Consensus 5 v~~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~al~~~~~d~~vr-vvVl~g~g~~~F~aG~Dl~~~~~~-~----~~ 75 (258)
T PRK09076 5 LDLEIDGHVAILTLNNP---PANTWTADSLQALKQLVLELNADKDVY-ALVITGDGEKFFSAGADLNLFADG-D----KA 75 (258)
T ss_pred EEEEEECCEEEEEECCC---CcCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCceEeCcCHHHHhhc-C----hh
Confidence 67888999999999999 459999999999999999999999999 99999998 789999999987541 1 11
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 76 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~iG- 152 (258)
T PRK09076 76 VAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQ-AQMALPEASVGL-LPCAGGTQNLPWLVG- 152 (258)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCC-CEeeCcccccCC-CCCccHHHHHHHHhC-
Confidence 12233455677889999999999999999999999999999999999987 899999999999 67765 789999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
..++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..| |.++..+|+.++..
T Consensus 153 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 215 (258)
T PRK09076 153 EGWAKRMILCGERVDAATALRIGLVEEVVEK-GEAREAALALAQKVANQS--PSAVAACKTLIQAA 215 (258)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCceecCc-hhHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 889999999999999999 99999999998764
No 25
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.4e-48 Score=327.90 Aligned_cols=212 Identities=20% Similarity=0.273 Sum_probs=189.8
Q ss_pred ceeeE-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 2 i~~~~-~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
|.+++ +++|++|+||+|+ +.|++|.+++.+|.+++++++.|++++ +||+||.|++||+|.|++++..... +..
T Consensus 13 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~---~~~ 86 (268)
T PRK07327 13 LRFDRPPPGVLEIVLNGPG--ALNAADARMHRELADIWRDVDRDPDVR-VVLIRGEGKAFSAGGDLALVEEMAD---DFE 86 (268)
T ss_pred EEEEecCCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHhhhCCCce-EEEEECCCCCcccccCHHHHhhccC---cHH
Confidence 56777 5789999999996 789999999999999999999999999 9999999999999999998754211 122
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
...++...+.+++..+.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 163 (268)
T PRK07327 87 VRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKD-ARIIDGHTRLGV-AAGDHAAIVWPLLCG- 163 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCC-CEEeCcccccCC-CCCcchhhHHHHHhC-
Confidence 23334455677889999999999999999999999999999999999988 899999999999 56665 689999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
..++++++++|++++|+||+++||||+++++ +++.+++.++|+++++.| +.++..+|+.++..
T Consensus 164 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 226 (268)
T PRK07327 164 MAKAKYYLLLCEPVSGEEAERIGLVSLAVDD-DELLPKALEVAERLAAGS--QTAIRWTKYALNNW 226 (268)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998 889999999999999999 99999999999864
No 26
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.2e-48 Score=327.78 Aligned_cols=213 Identities=22% Similarity=0.318 Sum_probs=191.7
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
|.++++++|++|+||+|+ +.|++|.+++.+|.++++.+++|++++ +||++|.| ++||+|.|++++..... +.+
T Consensus 13 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~~FcaG~Dl~~~~~~~~---~~~ 86 (269)
T PRK06127 13 LLAEKTGGLGRITFNNPA--RHNAMSLDMWEALPQALAAAEDDDAIR-VVVLTGAGEKAFVSGADISQFEESRS---DAE 86 (269)
T ss_pred eEEEEECCEEEEEecCCC--ccCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEEeCCCCceecCcCHHHHhhccc---chH
Confidence 678899999999999997 889999999999999999999999999 99999998 79999999998754211 122
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+......++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 87 ~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 163 (269)
T PRK06127 87 AVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAED-SRFGIPAARLGL-GYGYDGVKNLVDLVG- 163 (269)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCC-CEeeCchhhhCC-CCCccHHHHHHHHhC-
Confidence 23344555677888999999999999999999999999999999999988 899999999999 56655 789999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~ 226 (243)
..++++++++|++++|+||+++||||+|+|+ +++.+++.++|++++..| |.+++.+|+.++...
T Consensus 164 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~ 227 (269)
T PRK06127 164 PSAAKDLFYTARRFDAAEALRIGLVHRVTAA-DDLETALADYAATIAGNA--PLTLRAAKRAIAELL 227 (269)
T ss_pred HHHHHHHHHcCCCCCHHHHHHcCCCCEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999997 899999999999999998 999999999997653
No 27
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.2e-48 Score=327.77 Aligned_cols=209 Identities=22% Similarity=0.303 Sum_probs=188.2
Q ss_pred ceeeE-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 2 i~~~~-~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
+.+++ +++|++|+||+|+ +.|++|.+++.+|.++++.+++|++++ +||++|.|++||+|.|++++... .+.
T Consensus 9 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~----~~~- 80 (261)
T PRK08138 9 VLLERPADGVALLRLNRPE--ARNALNMEVRQQLAEHFTELSEDPDIR-AIVLTGGEKVFAAGADIKEFATA----GAI- 80 (261)
T ss_pred EEEEEccCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCee-EEEEECCCCCeeCCcCHHHHhcc----chh-
Confidence 45676 6889999999997 789999999999999999999999999 99999999999999999987542 111
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
..+...+.+++.++.++|||+||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 81 --~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 155 (261)
T PRK08138 81 --EMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGES-ASFGQPEIKVGL-MPGAGGTQRLVRAVG- 155 (261)
T ss_pred --HHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCC-CEeeCccccccc-CCCCcHHHHHHHHhC-
Confidence 123344567888999999999999999999999999999999999987 899999999999 67776 689999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~ 226 (243)
...+++++++|++++|+||+++||||+|+++ +++.+++.++++++++.| +.++..+|+.++...
T Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~ 219 (261)
T PRK08138 156 KFKAMRMALTGCMVPAPEALAIGLVSEVVED-EQTLPRALELAREIARMP--PLALAQIKEVVLAGA 219 (261)
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCCcEecCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998 889999999999999998 999999999987653
No 28
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.8e-48 Score=325.28 Aligned_cols=209 Identities=20% Similarity=0.238 Sum_probs=188.0
Q ss_pred ceeeEeCC---EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccch
Q 041046 2 CTLEKHGD---VFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGA 78 (243)
Q Consensus 2 i~~~~~~~---v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~ 78 (243)
|.++++++ |++|+||+|+ +.|++|.+|+++|.++++.+++|++++ +||++|.|++||+|.|++++..... .
T Consensus 5 i~~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-~vVl~g~g~~FcaG~Dl~~~~~~~~--~- 78 (251)
T PRK06023 5 ILVERPGAHPGVQVIRFNRPE--KKNAITRAMYATMAKALKAADADDAIR-AHVFLGTEGCFSAGNDMQDFLAAAM--G- 78 (251)
T ss_pred EEEEeecCcCcEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCeecCcCHHHHhhccc--c-
Confidence 67788774 9999999997 889999999999999999999999999 9999999999999999998754211 1
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHh
Q 041046 79 RERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKV 157 (243)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~ 157 (243)
. ..+...+.+++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| ++++++++
T Consensus 79 ~---~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~~ 153 (251)
T PRK06023 79 G---TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPR-SLFRTPFVDLAL-VPEAGSSLLAPRLM 153 (251)
T ss_pred c---hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCC-CEecCcccccCC-CCCchHHHHHHHHH
Confidence 1 112334567888999999999999999999999999999999999987 899999999999 78876 57899999
Q ss_pred CCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
| ..++++++++|++++|+||+++||||+|+|. +++.+++.+++++++..| |.++..+|+.++..
T Consensus 154 g-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 217 (251)
T PRK06023 154 G-HQRAFALLALGEGFSAEAAQEAGLIWKIVDE-EAVEAETLKAAEELAAKP--PQALQIARDLMRGP 217 (251)
T ss_pred h-HHHHHHHHHhCCCCCHHHHHHcCCcceeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhc
Confidence 9 9999999999999999999999999999998 889999999999999999 99999999999754
No 29
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=4.9e-49 Score=323.20 Aligned_cols=212 Identities=21% Similarity=0.299 Sum_probs=187.9
Q ss_pred eeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHH
Q 041046 4 LEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLL 83 (243)
Q Consensus 4 ~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~ 83 (243)
...+++|+.|+||||+ ..|+++..++.+|.++|..+++|++++ ++|+||.|+.||+|.|++++..... .+..
T Consensus 41 ~~~d~~I~lItlNRP~--~~Nal~~~~m~eL~~A~~~~e~D~s~~-viVltG~gksFcsG~Dl~e~~~~~~----~~~~- 112 (290)
T KOG1680|consen 41 VGEDNGIALITLNRPK--ALNALCRATMLELAEAFKDFESDDSVG-VIVLTGSGKSFCSGADLKEMKKDEF----QDVS- 112 (290)
T ss_pred eecCCCeEEEEeCChH--HhccccHHHHHHHHHHHHHhhccCccc-EEEEEcCCCccccccCHHHHhhccc----cccc-
Confidence 4456789999999997 899999999999999999999999999 9999999999999999999876321 1111
Q ss_pred HHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCHHH
Q 041046 84 YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSATA 162 (243)
Q Consensus 84 ~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~ 162 (243)
...+.+.+..+.+.+||+|+++||+|+|||+||+++||+|||+++ +.|++|+.++|+ +|.+| +++|++.+| .++
T Consensus 113 --~~~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~-Akfg~~~~~~Gi-~p~~GGT~rl~r~vG-~s~ 187 (290)
T KOG1680|consen 113 --DGIFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEG-AKFGFFEIRMGI-IPSWGGTQRLPRIVG-KSR 187 (290)
T ss_pred --cccccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCC-CeecccccccCC-ccCCCchhhHHHHhC-hHH
Confidence 111334444555899999999999999999999999999999987 899999999999 78776 789999999 999
Q ss_pred HHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046 163 RRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG 231 (243)
Q Consensus 163 a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~ 231 (243)
|+++++||++++|+||+++||||+|+|. +++..+|.++++++++.| +.++...|..++......+.
T Consensus 188 Ale~~ltg~~~~AqeA~~~GlVn~Vvp~-~~~l~eAv~l~~~Ia~~~--~~~v~~~K~svn~~~e~~l~ 253 (290)
T KOG1680|consen 188 ALEMILTGRRLGAQEAKKIGLVNKVVPS-GDALGEAVKLAEQIAKNS--PLVVRADKESVNAAYETTLF 253 (290)
T ss_pred HHHHHHhcCcccHHHHHhCCceeEeecc-hhHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhhccHH
Confidence 9999999999999999999999999999 889999999999999999 99999999999986555444
No 30
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=3.4e-48 Score=326.20 Aligned_cols=215 Identities=29% Similarity=0.454 Sum_probs=199.2
Q ss_pred eeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHH
Q 041046 3 TLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERL 82 (243)
Q Consensus 3 ~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~ 82 (243)
.++++++|++|+||+|+ +.|++|.+++++|.++++.+++|++++ +||++|.+++||+|.|++++... +.+..
T Consensus 1 ~~~~~~~v~~i~ln~p~--~~N~l~~~~~~~l~~~l~~~~~d~~v~-vvv~~~~~~~F~~G~Dl~~~~~~-----~~~~~ 72 (245)
T PF00378_consen 1 KYEIEDGVATITLNRPE--KRNALNPEMLDELEEALDEAEADPDVK-VVVISGGGKAFCAGADLKEFLNS-----DEEEA 72 (245)
T ss_dssp EEEEETTEEEEEEECGG--GTTEBSHHHHHHHHHHHHHHHHSTTES-EEEEEESTSESBESB-HHHHHHH-----HHHHH
T ss_pred CEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhcCCcc-EEEEeecccccccccchhhhhcc-----ccccc
Confidence 47899999999999998 899999999999999999999999999 99999999999999999998863 35667
Q ss_pred HHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCHH
Q 041046 83 LYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSAT 161 (243)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~ 161 (243)
.++...+++++.++.++|||+||+|||+|+|+|++++++||+||++++ +.|++||+++|+ +|++| +.++++++| ..
T Consensus 73 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~r~~g-~~ 149 (245)
T PF00378_consen 73 REFFRRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAED-AKFGFPEVRLGI-FPGAGGTFRLPRLIG-PS 149 (245)
T ss_dssp HHHHHHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETT-TEEETGGGGGTS-SSTSTHHHHHHHHHH-HH
T ss_pred cccchhhccccccchhhhhheeecccccccccccccccccceEEeecc-cceeeeecccCc-ccccccccccceeee-cc
Confidence 788889999999999999999999999999999999999999999998 789999999999 67654 789999999 99
Q ss_pred HHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046 162 ARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG 231 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~ 231 (243)
.+++++++|++++|+||+++||||+|+++ +++.+++.+++++++..| +.++..+|+.+++.+...++
T Consensus 150 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~~~~~~~~~~~ 216 (245)
T PF00378_consen 150 RARELLLTGEPISAEEALELGLVDEVVPD-EELDEEALELAKRLAAKP--PSALRATKKALNRALEQSLE 216 (245)
T ss_dssp HHHHHHHHTCEEEHHHHHHTTSSSEEESG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHSHHH
T ss_pred cccccccccccchhHHHHhhcceeEEcCc-hhhhHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999 669999999999999999 99999999999987544433
No 31
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=1.6e-47 Score=324.70 Aligned_cols=211 Identities=23% Similarity=0.327 Sum_probs=191.2
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
|.++++++|++|+||+|+ +.|++|.+++.+|.+++++++.|++++ +||++|.| ++||+|.|++++... . ..
T Consensus 6 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~~~~~~~d~~v~-~vvl~g~g~~~F~aG~Dl~~~~~~-~----~~ 77 (260)
T PRK05809 6 VILEKEGHIAVVTINRPK--ALNALNSETLKELDTVLDDIENDDNVY-AVILTGAGEKAFVAGADISEMKDL-N----EE 77 (260)
T ss_pred EEEEEeCCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHhcCCCcE-EEEEEcCCCCceeeCcChHhHhcc-C----hH
Confidence 567889999999999997 789999999999999999999999999 99999999 999999999987542 1 11
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+.....+++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| +++|++++|
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 154 (260)
T PRK05809 78 EGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEK-AKFGQPEVGLGI-TPGFGGTQRLARIVG- 154 (260)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCC-CEEeCcccccCC-CCCccHHHHHHHHhC-
Confidence 22334445577889999999999999999999999999999999999987 899999999999 78876 689999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~ 226 (243)
...+++++++|++++|+||+++||||+|+++ +++.+++.+++++++..| |.++..+|+.++...
T Consensus 155 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 218 (260)
T PRK05809 155 PGKAKELIYTGDMINAEEALRIGLVNKVVEP-EKLMEEAKALANKIAANA--PIAVKLCKDAINRGM 218 (260)
T ss_pred HHHHHHHHHhCCCCCHHHHHHcCCCCcccCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999997 899999999999999998 999999999998653
No 32
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-47 Score=325.51 Aligned_cols=211 Identities=22% Similarity=0.327 Sum_probs=192.5
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||+|+ +.|++|.+++++|.+++++++.|++++ +||++|.|++||+|+|++++..... ..
T Consensus 7 i~~~~~~~v~~i~lnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~----~~- 78 (259)
T PRK06688 7 LLVELEDGVLTITINRPD--KKNALTAAMYQALADALEAAATDPAVR-VVVLTGAGRAFSAGGDIKDFPKAPP----KP- 78 (259)
T ss_pred eEEEEECCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCccCccCHHHHhccCc----ch-
Confidence 678899999999999997 889999999999999999999999999 9999999999999999998765211 11
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
..+...+++++.++.++|||+||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| +.++++++| .
T Consensus 79 -~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~~G-~ 154 (259)
T PRK06688 79 -PDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASES-AKFSLPFAKLGL-CPDAGGSALLPRLIG-R 154 (259)
T ss_pred -HHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCC-CEecCchhhcCC-CCCcchhhHHHHHhh-H
Confidence 234556788899999999999999999999999999999999999987 899999999999 67776 689999999 9
Q ss_pred HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC 227 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~ 227 (243)
..+++++++|++++|+||+++||||+++++ +++.+++.++++++++.| +.++..+|+.++....
T Consensus 155 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a~~i~~~~--~~a~~~~K~~l~~~~~ 218 (259)
T PRK06688 155 ARAAEMLLLGEPLSAEEALRIGLVNRVVPA-AELDAEADAQAAKLAAGP--ASALRYTKRAINAATL 218 (259)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999997 889999999999999998 9999999999986543
No 33
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=1.3e-47 Score=324.90 Aligned_cols=211 Identities=20% Similarity=0.311 Sum_probs=186.2
Q ss_pred ceeeE-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchH
Q 041046 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGAR 79 (243)
Q Consensus 2 i~~~~-~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~ 79 (243)
|.+++ +++|++|+||+|+ +.|++|.+++.+|.++++.++.|++++ +||+||.| ++||+|.|++++..... .. .
T Consensus 4 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~el~~~l~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~~~-~~-~ 78 (259)
T TIGR01929 4 IRYEKSTDGIAKITINRPQ--VRNAFRPLTVKEIIQALDDAREDPDIG-VVILTGAGDKAFCSGGDQKVRGDYGY-ID-D 78 (259)
T ss_pred EEEEEcCCCEEEEEecCCc--cccCCCHHHHHHHHHHHHHHhhCCCeE-EEEEEeCCCCceEeCcChHhHhhccc-cc-h
Confidence 46777 8999999999997 789999999999999999999999999 99999999 79999999997643101 00 1
Q ss_pred HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchh-hHHHHHHHhC
Q 041046 80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDY-FTALFRAKVG 158 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~-g~~~l~~~~g 158 (243)
..... ..+.+++..+.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++ ++.++++++|
T Consensus 79 ~~~~~--~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~-~p~~~~~~~l~~~vG 154 (259)
T TIGR01929 79 SGVHR--LNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAEN-ARFGQTGPKVGS-FDGGYGSSYLARIVG 154 (259)
T ss_pred hhHHH--HHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCC-CEecCccccccc-CCCccHHHHHHHHhH
Confidence 11111 12456788899999999999999999999999999999999987 899999999999 6655 5789999999
Q ss_pred CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
+.++++++++|++++|+||+++||||+|+|+ +++.+++.++|++++..| +.+++.+|+.++..
T Consensus 155 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 217 (259)
T TIGR01929 155 -QKKAREIWFLCRQYDAEQALDMGLVNTVVPL-ADLEKETVRWCREILQKS--PMAIRMLKAALNAD 217 (259)
T ss_pred -HHHHHHHHHhCCccCHHHHHHcCCcccccCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998 899999999999999999 99999999999765
No 34
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=1.6e-47 Score=327.02 Aligned_cols=216 Identities=20% Similarity=0.317 Sum_probs=190.0
Q ss_pred eeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhccccc--ch--
Q 041046 3 TLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRA--GA-- 78 (243)
Q Consensus 3 ~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~--~~-- 78 (243)
.++.+++|++|+||+|+ +.|++|.+++.+|.++++.++.|++++ +||++|.|++||+|+|++++....... .+
T Consensus 11 ~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-vvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 87 (275)
T PLN02664 11 QKSPNSSVFHLNLNRPS--QRNALSLDFFTEFPKALSSLDQNPNVS-VIILSGAGDHFCSGIDLKTLNSISEQSSSGDRG 87 (275)
T ss_pred EecCCCCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEECCCCceeeCcChHHhhhcccccccccch
Confidence 34567899999999997 889999999999999999999999999 999999999999999999875421100 00
Q ss_pred --HHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHH
Q 041046 79 --RERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRA 155 (243)
Q Consensus 79 --~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~ 155 (243)
......+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ .|++| ++++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~ 165 (275)
T PLN02664 88 RSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSED-AFFSVKEVDLAI-TADLGTLQRLPS 165 (275)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCC-CEeccHHHhhCC-CCCccHHHHHHH
Confidence 1223344555677888999999999999999999999999999999999988 899999999999 67766 679999
Q ss_pred HhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046 156 KVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL 226 (243)
Q Consensus 156 ~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~ 226 (243)
++| ..++++++++|++++|+||+++||||+|+++.+++.+.+.+++++++..| |.+++.+|+.++...
T Consensus 166 ~vG-~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~--p~a~~~~K~~l~~~~ 233 (275)
T PLN02664 166 IVG-YGNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKS--PLAVTGTKAVLLRSR 233 (275)
T ss_pred HhC-HHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence 999 99999999999999999999999999999854789999999999999999 999999999998653
No 35
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-47 Score=325.38 Aligned_cols=211 Identities=21% Similarity=0.353 Sum_probs=191.3
Q ss_pred ceeeE-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchH
Q 041046 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGAR 79 (243)
Q Consensus 2 i~~~~-~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~ 79 (243)
|.+++ +++|++|+||+|+ +.|++|.+++.+|.+++++++.|++++ +||++|.| ++||+|.|++++... . .
T Consensus 5 v~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~v~-~vVl~g~g~~~F~aG~Dl~~~~~~-~----~ 76 (260)
T PRK07657 5 ISVDYVTPHVVKITLNRPR--AANALSLALLEELQNILTQINEEANVR-VVILTGAGEKAFCAGADLKERAGM-N----E 76 (260)
T ss_pred EEEEEccCCEEEEEEeCCc--ccCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEecCCCCceEcCcChHhhhcC-C----h
Confidence 56776 7899999999997 789999999999999999999999999 99999999 599999999987531 1 1
Q ss_pred HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhC
Q 041046 80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVG 158 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g 158 (243)
.....+...+.+++..+.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~vG 154 (260)
T PRK07657 77 EQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAES-ASLGLTETTLAI-IPGAGGTQRLPRLIG 154 (260)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCC-CEEcCchhccCc-CCCccHHHHHHHHhC
Confidence 223445556788899999999999999999999999999999999999988 899999999999 67776 689999999
Q ss_pred CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046 159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL 226 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~ 226 (243)
...+++++++|++++|+||+++||||+++++ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 155 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~ 218 (260)
T PRK07657 155 -VGRAKELIYTGRRISAQEAKEIGLVEFVVPA-HLLEEKAIEIAEKIASNG--PIAVRQAKEAISNGI 218 (260)
T ss_pred -HHHHHHHHHhCCCCCHHHHHHcCCCCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998 889999999999999998 999999999998653
No 36
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-47 Score=325.49 Aligned_cols=214 Identities=18% Similarity=0.228 Sum_probs=186.1
Q ss_pred CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
+|.++++++|++|+||+|+ +.|++|.+++++|.+++++++.|++++ +||++|.|++||+|.|++++..... .+..
T Consensus 6 ~i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~--~~~~ 80 (263)
T PRK07799 6 HALVEQRGHTLIVTMNRPE--ARNALSTEMLRIMVDAWDRVDNDPDIR-SCILTGAGGAFCAGMDLKAATKKPP--GDSF 80 (263)
T ss_pred eEEEEEECCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCccccccCHHHHhhccc--cchh
Confidence 3678899999999999997 789999999999999999999999999 9999999999999999998764211 1010
Q ss_pred HHHHH-HHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhC
Q 041046 81 RLLYM-VESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVG 158 (243)
Q Consensus 81 ~~~~~-~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g 158 (243)
....+ ...+..+ .++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++|
T Consensus 81 ~~~~~~~~~~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG 157 (263)
T PRK07799 81 KDGSYDPSRIDAL-LKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGES-AKFGISEAKWSL-FPMGGSAVRLVRQIP 157 (263)
T ss_pred hhhhhhhhHHHHH-HHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCC-CEecCcccccCc-CCCccHHHHHHHHhC
Confidence 00001 1122333 3578999999999999999999999999999999988 899999999999 67776 679999999
Q ss_pred CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046 159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL 226 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~ 226 (243)
.+.+++++++|++++|+||+++||||+|+|+ +++.+++.++++++++.| |.++..+|+.++...
T Consensus 158 -~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~~~~~--~~a~~~~K~~l~~~~ 221 (263)
T PRK07799 158 -YTVACDLLLTGRHITAAEAKEIGLIGHVVPD-GQALDKALELAELINANG--PLAVQAILRTIRETE 221 (263)
T ss_pred -HHHHHHHHHcCCCCCHHHHHHcCCccEecCc-chHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998 889999999999999999 999999999998653
No 37
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-47 Score=324.31 Aligned_cols=209 Identities=21% Similarity=0.357 Sum_probs=189.6
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||+|+ +.|++|.+++.+|.++++++ .|++++ +||++|.|++||+|.|++++..... ...
T Consensus 8 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~-~d~~vr-vvvl~g~g~~F~aG~Dl~~~~~~~~----~~~ 79 (260)
T PRK07659 8 VVVKYEGRVATIMLNRPE--ALNALDEPMLKELLQALKEV-AESSAH-IVVLRGNGRGFSAGGDIKMMLSSND----ESK 79 (260)
T ss_pred EEEEeeCCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHh-cCCCee-EEEEECCCCCcccccCHHHHhhccC----chh
Confidence 678899999999999997 78999999999999999999 588999 9999999999999999998764211 222
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
..++...+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~~~vg-~ 156 (260)
T PRK07659 80 FDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADIS-AKLAMNFIGIGL-IPDGGGHFFLQKRVG-E 156 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCC-CEEcCchhhcCC-CCCCchhhhHHHhcC-H
Confidence 3455666788899999999999999999999999999999999999988 899999999999 67765 689999999 9
Q ss_pred HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
..+++++++|++++|+||+++||||+++ + +++.+++.++++++++.| +.++..+|+.++..
T Consensus 157 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~-~~~~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 217 (260)
T PRK07659 157 NKAKQIIWEGKKLSATEALDLGLIDEVI-G-GDFQTAAKQKISEWLQKP--LKAMIETKQIYCEL 217 (260)
T ss_pred HHHHHHHHhCCccCHHHHHHcCChHHHh-h-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 9999999999999999999999999999 6 789999999999999998 99999999998765
No 38
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-47 Score=325.35 Aligned_cols=216 Identities=25% Similarity=0.363 Sum_probs=190.6
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCC-CCCeEEEEecCCCccccCCChhhHHhcccccc-hH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEA-TPGSALITTSHGKFFSNGLDLAWAQAAGSRAG-AR 79 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~-~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~-~~ 79 (243)
|.++++++|++|+||+|+ +.|++|.+++.+|.++++.++.|+ +++ +||++|.|++||+|.|++++........ ..
T Consensus 6 v~~~~~~~i~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~~v~-vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (266)
T PRK05981 6 VTLDFDGGVAILTLDHPE--VMNAVSIDMLGGLAEALDAIEDGKAEVR-CLVLTGAGRGFCTGANLQGRGSGGRESDSGG 82 (266)
T ss_pred EEEEeECCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCCCceE-EEEEeCCCCCcccccCHHhhhcccccccccc
Confidence 678899999999999997 789999999999999999999876 499 9999999999999999998754211000 01
Q ss_pred HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhC
Q 041046 80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVG 158 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g 158 (243)
.....+...+++++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||.++|+ +|++| ++++++++|
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~~e~~lG~-~p~~g~~~~l~~~vg 160 (266)
T PRK05981 83 DAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARS-AYFLQAFRRIGL-VPDGGSTWLLPRLVG 160 (266)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCC-CEEechHhhcCC-CCCccHHHHHHHHhH
Confidence 112334455678899999999999999999999999999999999999988 899999999999 78776 679999999
Q ss_pred CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046 159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL 226 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~ 226 (243)
+..+++++++|++++|+||+++||||+++++ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 161 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~l~~~~--~~a~~~~K~~~~~~~ 224 (266)
T PRK05981 161 -KARAMELSLLGEKLPAETALQWGLVNRVVDD-AELMAEAMKLAHELANGP--TVALGLIRKLYWDSP 224 (266)
T ss_pred -HHHHHHHHHhCCCcCHHHHHHcCCceEeeCH-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998 889999999999999998 899999999997653
No 39
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-47 Score=324.28 Aligned_cols=213 Identities=22% Similarity=0.322 Sum_probs=187.3
Q ss_pred ceeeEe-CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046 2 CTLEKH-GDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 2 i~~~~~-~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
+.++++ ++|++|+||+|. +.|++|.+++.+|.++++.++.|++++ +||++|.|++||+|.|++++..... .. ..
T Consensus 6 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~-~~ 80 (262)
T PRK07468 6 IRIAVDARGVATLTLNRPE--KHNALSARMIAELTTAARRLAADAAVR-VVVLTGAGKSFCAGGDLGWMRAQMT-AD-RA 80 (262)
T ss_pred EEEEEcCCcEEEEEEcCcc--cccCCCHHHHHHHHHHHHHHhcCCCeE-EEEEECCCCcccCCcCHHHHHhhcc-cc-hh
Confidence 567775 689999999997 899999999999999999999999999 9999999999999999998753211 01 11
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCH
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~ 160 (243)
........+..++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+..+.+++| .
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~~~~vG-~ 157 (262)
T PRK07468 81 TRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSG-ARFGLTETRLGL-IPATISPYVVARMG-E 157 (262)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCC-CEEeCchhccCC-CcccchhhHHhhcc-H
Confidence 11122344667888999999999999999999999999999999999987 899999999999 78877555667799 9
Q ss_pred HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
.++++|+++|++++|+||+++||||+|++. +++.+++.++++++++.| |.++..+|+.++..
T Consensus 158 ~~a~~lll~g~~~~a~eA~~~Glv~~v~~~-~~l~~~~~~~a~~l~~~~--~~a~~~~K~~l~~~ 219 (262)
T PRK07468 158 ANARRVFMSARLFDAEEAVRLGLLSRVVPA-ERLDAAVEAEVTPYLSCA--PGAVAAAKALVRAL 219 (262)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhh
Confidence 999999999999999999999999999997 889999999999999998 99999999998764
No 40
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=1.8e-47 Score=322.61 Aligned_cols=206 Identities=23% Similarity=0.357 Sum_probs=187.2
Q ss_pred eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC-CCccccCCChhhHHhcccccchHHHHHHH
Q 041046 7 HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH-GKFFSNGLDLAWAQAAGSRAGARERLLYM 85 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~-g~~F~~G~dl~~~~~~~~~~~~~~~~~~~ 85 (243)
+++|++|+||+|+ +.|++|.+++++|.+++++++.|++++ +||++|. |++||+|.|++++... . ......+
T Consensus 2 ~~~v~~itlnrp~--~~Nal~~~~~~~l~~~~~~~~~d~~vr-~vVl~g~~g~~F~aG~Dl~~~~~~-~----~~~~~~~ 73 (251)
T PLN02600 2 DSGIVELRLDRPE--AKNAIGKEMLRGLRSAFEKIQADASAR-VVMLRSSVPGVFCAGADLKERRKM-S----PSEVQKF 73 (251)
T ss_pred CCcEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEecCCCCceeeCcCHHHHhcc-C----hHHHHHH
Confidence 4789999999997 889999999999999999999999999 9999998 5899999999987542 1 1223445
Q ss_pred HHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCHHHHH
Q 041046 86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSATARR 164 (243)
Q Consensus 86 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~a~ 164 (243)
...+..++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| ...++
T Consensus 74 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~~G-~~~a~ 150 (251)
T PLN02600 74 VNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEE-AVFGLPETGLAI-IPGAGGTQRLPRLVG-RSRAK 150 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCC-CEEeCcccccCc-CCCchHHHHHHHHhC-HHHHH
Confidence 566778889999999999999999999999999999999999988 899999999999 67776 689999999 99999
Q ss_pred HHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046 165 DVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL 226 (243)
Q Consensus 165 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~ 226 (243)
+++++|++++|+||+++||||+++++ +++.+++.++|+++++.| |.++..+|+.++...
T Consensus 151 ~l~ltg~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~ 209 (251)
T PLN02600 151 ELIFTGRRIGAREAASMGLVNYCVPA-GEAYEKALELAQEINQKG--PLAIKMAKKAINEGS 209 (251)
T ss_pred HHHHhCCccCHHHHHHcCCCcEeeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHc
Confidence 99999999999999999999999998 889999999999999999 999999999998653
No 41
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.2e-47 Score=315.02 Aligned_cols=215 Identities=22% Similarity=0.329 Sum_probs=192.9
Q ss_pred CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
+|.++++++|++|+||+| +.|++|.+++++|.++++.++ ++++ +||++|.|++||+|.|++++... ..
T Consensus 4 ~i~~~~~~~v~~itln~~---~~Nal~~~~~~~l~~~l~~~~--~~~~-vvvl~g~g~~F~~G~Dl~~~~~~------~~ 71 (229)
T PRK06213 4 LVSYTLEDGVATITLDDG---KVNALSPAMIDALNAALDQAE--DDRA-VVVITGQPGIFSGGFDLKVMTSG------AQ 71 (229)
T ss_pred eEEEEecCCEEEEEeCCC---CCCCCCHHHHHHHHHHHHHhh--ccCc-EEEEeCCCCceEcCcCHHHHhcc------hH
Confidence 367889999999999998 789999999999999999998 4568 99999999999999999987541 22
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCH
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~ 160 (243)
...++...+.+++.++.++||||||+|||+|+|+|++++++||+||++++.++|++||+++|+++|.++..++++++| .
T Consensus 72 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g-~ 150 (229)
T PRK06213 72 AAIALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLT-P 150 (229)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcC-H
Confidence 233455667788999999999999999999999999999999999999875789999999999556667788999999 9
Q ss_pred HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG 231 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~ 231 (243)
..+++++++|++++|+||+++||||+|+++ +++.+++.++++++++.| +.++..+|+.++....+.++
T Consensus 151 ~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~ 218 (229)
T PRK06213 151 SAFQRAVINAEMFDPEEAVAAGFLDEVVPP-EQLLARAQAAARELAGLN--MGAHAATKLKVRAAALEAIR 218 (229)
T ss_pred HHHHHHHHcCcccCHHHHHHCCCceeccCh-HHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997 889999999999999998 99999999999988766665
No 42
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.6e-47 Score=320.46 Aligned_cols=213 Identities=21% Similarity=0.314 Sum_probs=190.9
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+|+ +.|++|.+++++|.+++++++.|++++ +||++|.|++||+|.|++++..... . .
T Consensus 7 ~~~~~~~~v~~i~ln~p~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~~--~-~-- 78 (249)
T PRK07110 7 ELREVEEGIAQVTMQDRV--NKNAFSDELCDQLHEAFDTIAQDPRYK-VVILTGYPNYFATGGTQEGLLSLQT--G-K-- 78 (249)
T ss_pred EEEEeeCCEEEEEecCCC--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCeeCCcChHHHhhccc--h-h--
Confidence 568889999999999997 889999999999999999999999999 9999999999999999998764211 1 1
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
..+.. ++++..+.++|||+||+|||+|+|+|++++++||+||++++ ++|++||.++|+ +|++| ++++++++| .
T Consensus 79 -~~~~~--~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~~g-~ 152 (249)
T PRK07110 79 -GTFTE--ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRE-SVYTANFMKYGF-TPGMGATAILPEKLG-L 152 (249)
T ss_pred -hhHhh--HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCC-CEecCchhccCC-CCCchHHHHHHHHhC-H
Confidence 11111 57888999999999999999999999999999999999988 899999999999 67776 689999999 9
Q ss_pred HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG 231 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~ 231 (243)
..+++++++|++++|+||+++||||+|+++ +++.+++.++++++++.| +.++..+|+.++......++
T Consensus 153 ~~a~~llltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~ 220 (249)
T PRK07110 153 ALGQEMLLTARYYRGAELKKRGVPFPVLPR-AEVLEKALELARSLAEKP--RHSLVLLKDHLVADRRRRLP 220 (249)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCCeEEeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhhccHH
Confidence 999999999999999999999999999997 889999999999999999 99999999999866544433
No 43
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.9e-47 Score=322.01 Aligned_cols=206 Identities=21% Similarity=0.291 Sum_probs=183.1
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||+|+ +.|++|.+|+.+|.+++++++.|++++ +||++|.|++||+|.|++++... +. ...
T Consensus 5 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~---~~-~~~ 77 (254)
T PRK08252 5 VLVERRGRVLIITINRPE--ARNAVNAAVAQGLAAALDELDADPDLS-VGILTGAGGTFCAGMDLKAFARG---ER-PSI 77 (254)
T ss_pred EEEEEECCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCceEcCcCHHHHhcc---cc-hhh
Confidence 678999999999999997 789999999999999999999999999 99999999999999999987642 11 111
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
.. ..+..++. ..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus 78 ~~---~~~~~~~~--~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vg-~ 149 (254)
T PRK08252 78 PG---RGFGGLTE--RPPRKPLIAAVEGYALAGGFELALACDLIVAARD-AKFGLPEVKRGL-VAAGGGLLRLPRRIP-Y 149 (254)
T ss_pred hH---HHHHHHHH--hcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCC-CEEeCchhhcCC-CCCchHHHHHHHHcC-H
Confidence 11 11222222 4799999999999999999999999999999988 899999999999 67765 789999999 9
Q ss_pred HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
.++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 150 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 211 (254)
T PRK08252 150 HIAMELALTGDMLTAERAHELGLVNRLTEP-GQALDAALELAERIAANG--PLAVAASKRIVVES 211 (254)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 899999999999999999 99999999999865
No 44
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-47 Score=325.47 Aligned_cols=216 Identities=22% Similarity=0.320 Sum_probs=188.4
Q ss_pred ceeeE-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhccccc--ch
Q 041046 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRA--GA 78 (243)
Q Consensus 2 i~~~~-~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~--~~ 78 (243)
|.+++ +++|++|+||+|+ +.|++|.+++.+|.+++++++.|++++ +||++|.|++||+|.|++++....... .+
T Consensus 11 v~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-vvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 87 (276)
T PRK05864 11 VLVDHPRPEIALITLNRPE--RMNSMAFDVMVPLKEALAEVSYDNSVR-VVVLTGAGRGFSSGADHKSAGVVPHVEGLTR 87 (276)
T ss_pred eEEeeecCCEEEEEecCCc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCeecCcchhhhhcccccccccc
Confidence 56776 7899999999997 789999999999999999999999999 999999999999999999864311000 01
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHh
Q 041046 79 RERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKV 157 (243)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~ 157 (243)
..........+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+++|++| ++++++++
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl~p~~~g~~~~l~~~v 166 (276)
T PRK05864 88 PTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSS-AYFRAAGINNGLTASELGLSYLLPRAI 166 (276)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCC-CEecCcccccCCCCCCcchheehHhhh
Confidence 1111223445677888999999999999999999999999999999999988 899999999999433666 57899999
Q ss_pred CCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
| ...+++++++|++++|+||+++||||+|+++ +++.+++.++|++++..| |.++..+|+.++..
T Consensus 167 G-~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~ 230 (276)
T PRK05864 167 G-SSRAFEIMLTGRDVDAEEAERIGLVSRQVPD-EQLLDTCYAIAARMAGFS--RPGIELTKRTLWSG 230 (276)
T ss_pred C-HHHHHHHHHcCCccCHHHHHHcCCcceeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 9 9999999999999999999999999999998 899999999999999999 99999999998754
No 45
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-47 Score=322.39 Aligned_cols=209 Identities=26% Similarity=0.301 Sum_probs=187.3
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||+|+ +.|++|.+++++|.++++.++.|++++ +||++|.|++||+|.|++++..... .. .
T Consensus 5 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~~-~~-~-- 77 (249)
T PRK05870 5 VLLDVDDGVALITVNDPD--RRNAVTAEMSAQLRAAVAAAEADPDVH-ALVVTGAGKAFCAGADLTALGAAPG-RP-A-- 77 (249)
T ss_pred EEEEccCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCCeecCcChHHHhcccc-cc-h--
Confidence 578889999999999997 889999999999999999999999999 9999999999999999998764211 11 1
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
.+....+.+++..+.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 78 -~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~~G-~ 153 (249)
T PRK05870 78 -EDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPK-ALFDARFQKLGL-HPGGGATWMLQRAVG-P 153 (249)
T ss_pred -HHHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCC-CEEeCcccccCc-CCCCcceeeHHhhhC-H
Confidence 222344566777899999999999999999999999999999999988 899999999999 67776 578999999 9
Q ss_pred HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~ 226 (243)
.++++++++|++++|+||+++||||+++ +++.+++.+++++++..| |.++..+|+.++...
T Consensus 154 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv---~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~ 214 (249)
T PRK05870 154 QVARAALLFGMRFDAEAAVRHGLALMVA---DDPVAAALELAAGPAAAP--RELVLATKASMRATA 214 (249)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCHHHHH---hhHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999 469999999999999999 999999999998653
No 46
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=3.4e-47 Score=323.13 Aligned_cols=208 Identities=21% Similarity=0.333 Sum_probs=185.8
Q ss_pred ceeeE-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 2 i~~~~-~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
|.+++ +++|++|+||+|+ +.|++|.+++.+|.++++.++.|++++ +||++|.|++||+|+|++++..... . .
T Consensus 11 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~--~--~ 83 (265)
T PLN02888 11 ILVPKSRNGIATITINRPK--ALNALTRPMMVELAAAFKRLDEDDSVK-VIILTGSGRAFCSGVDLTAAEEVFK--G--D 83 (265)
T ss_pred EEEEeccCCEEEEEEcCCC--cccCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCcccCCCCHHHHHhhcc--c--h
Confidence 56675 6899999999996 789999999999999999999999999 9999999999999999998653211 1 1
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
. .....+++..+.++|||+||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 84 -~---~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 156 (265)
T PLN02888 84 -V---KDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRG-AKFIDTHAKFGI-FPSWGLSQKLSRIIG- 156 (265)
T ss_pred -h---hHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCC-CEecCccccccC-CCCccHhhHHHHHhC-
Confidence 1 112345677889999999999999999999999999999999988 899999999999 67776 679999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~ 226 (243)
..++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..+ +.+++.+|+.++...
T Consensus 157 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 220 (265)
T PLN02888 157 ANRAREVSLTAMPLTAETAERWGLVNHVVEE-SELLKKAREVAEAIIKNN--QGMVLRYKSVINDGL 220 (265)
T ss_pred HHHHHHHHHhCCccCHHHHHHcCCccEeeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998 889999999999999998 999999999998654
No 47
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=6.8e-47 Score=323.15 Aligned_cols=218 Identities=17% Similarity=0.289 Sum_probs=191.1
Q ss_pred ceeeE-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC--CccccCCChhhHHhcccccch
Q 041046 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG--KFFSNGLDLAWAQAAGSRAGA 78 (243)
Q Consensus 2 i~~~~-~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g--~~F~~G~dl~~~~~~~~~~~~ 78 (243)
|.+++ +++|++|+||+| +.|++|.+++.+|.++++++++|++++ +||+||.| ++||+|.|++++..... .
T Consensus 13 i~~~~~~~~Va~itlnr~---~~Nal~~~~~~eL~~al~~~~~d~~vr-~vVltg~g~~~~FcaG~Dl~~~~~~~~--~- 85 (278)
T PLN03214 13 VRVDRRPGGIAVVWLAKE---PVNSMTLAMWRSLDDALTALENDPTVR-GVVFASGLRRDVFTAGNDIAELYAPKT--S- 85 (278)
T ss_pred eEEEEcCCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHcCCCce-EEEEeCCCCCCcccCccCHHHHhcccc--c-
Confidence 67788 689999999998 789999999999999999999999999 99999987 79999999998753111 1
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHh
Q 041046 79 RERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKV 157 (243)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~ 157 (243)
......+.....+++.++.++||||||+|||+|+|+|++++++||+||++++ ++|++||+++|+++|++| ++++++++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~lGl~~p~~~~~~~l~~~~ 164 (278)
T PLN03214 86 AARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTE-GTMGLNEVALGIPVPKFWARLFMGRVI 164 (278)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCC-CEecCcHHHhCCCCCChhHHHHHHHhc
Confidence 1222233334466788899999999999999999999999999999999987 899999999999547665 68999999
Q ss_pred CCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046 158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG 231 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~ 231 (243)
| ..++++++++|+.++|+||+++||||+|+++ +++.+.+.+++++++..| +.++..+|+.++......++
T Consensus 165 G-~~~a~~llltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~~~~l~ 234 (278)
T PLN03214 165 D-RKVAESLLLRGRLVRPAEAKQLGLIDEVVPA-AALMEAAASAMERALKLP--SAARAATKALLREEFSAAWE 234 (278)
T ss_pred C-HHHHHHHHHcCCccCHHHHHHcCCCcEecCh-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhHHHHHH
Confidence 9 9999999999999999999999999999998 899999999999999998 99999999999877554433
No 48
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-47 Score=327.97 Aligned_cols=215 Identities=20% Similarity=0.230 Sum_probs=189.1
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhccccc-----
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRA----- 76 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~----- 76 (243)
|.++++++|++|+||+|+ +.|++|.+++.+|.++++.++.|++++ +||++|.|++||+|.|++++.......
T Consensus 6 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (296)
T PRK08260 6 IRYDVADGIATITLNRPD--KLNAFTVTMARELIEAFDAADADDAVR-AVIVTGAGRAFCAGADLSAGGNTFDLDAPRTP 82 (296)
T ss_pred EEEeeeCCEEEEEeCCCc--ccCCCCHHHHHHHHHHHHHHhcCCCeE-EEEEECCCCCeecCcChHHhhhcccccccccc
Confidence 578889999999999997 889999999999999999999999999 999999999999999999865310000
Q ss_pred -------chHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh
Q 041046 77 -------GARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF 149 (243)
Q Consensus 77 -------~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g 149 (243)
........+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~g 160 (296)
T PRK08260 83 VEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTA-ARFGFVFGRRGI-VPEAA 160 (296)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCC-CEEecchhhcCc-CCCcc
Confidence 001111223344567888999999999999999999999999999999999988 899999999999 78876
Q ss_pred -HHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcC-CCChhHHHHHHHHhhhH
Q 041046 150 -TALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR-KWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 150 -~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~-~~~~~~~~~~K~~l~~~ 225 (243)
++++++++| ..++++++++|++++|+||+++||||+|+++ +++.+++.+++++++.. | +.++..+|+.++..
T Consensus 161 ~~~~l~r~vG-~~~A~~llltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~i~~~~~--~~a~~~~K~~l~~~ 234 (296)
T PRK08260 161 SSWFLPRLVG-LQTALEWVYSGRVFDAQEALDGGLVRSVHPP-DELLPAARALAREIADNTS--PVSVALTRQMMWRM 234 (296)
T ss_pred hhhhHHHhhC-HHHHHHHHHcCCccCHHHHHHCCCceeecCH-HHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhc
Confidence 579999999 9999999999999999999999999999998 88999999999999985 7 89999999999765
No 49
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.7e-47 Score=321.99 Aligned_cols=208 Identities=22% Similarity=0.242 Sum_probs=182.5
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||+|+ +.|++|.+++.+|.++++.++.|++++ +||++|.|++||+|.|++++..... ..
T Consensus 5 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvltg~g~~FcaG~Dl~~~~~~~~----~~- 76 (254)
T PRK08259 5 VRVERNGPVTTVILNRPE--VRNAVDGPTAAALADAFRAFDADDAAS-VAVLWGAGGTFCAGADLKAVGTGRG----NR- 76 (254)
T ss_pred EEEEEECCEEEEEecCCc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCccCCcChHHHhcccc----hh-
Confidence 578899999999999997 789999999999999999999999999 9999999999999999998754211 11
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
.... ........+.++|||+||+|||+|+|+|++++++||+||++++ ++|++||.++|+ +|.+| ++++++++| .
T Consensus 77 ~~~~--~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~iG-~ 151 (254)
T PRK08259 77 LHPS--GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEED-AVFGVFCRRWGV-PLIDGGTVRLPRLIG-H 151 (254)
T ss_pred hhhh--hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCC-CEecCcccccCC-CCCccHHHHHHHHhC-H
Confidence 1110 0111222334799999999999999999999999999999988 899999999999 56655 789999999 9
Q ss_pred HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
.++++++++|+.++|+||+++||||+|+|+ +++.+++.++|+++++.| +.++..+|+.++..
T Consensus 152 ~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~ 213 (254)
T PRK08259 152 SRAMDLILTGRPVDADEALAIGLANRVVPK-GQARAAAEELAAELAAFP--QTCLRADRLSALEQ 213 (254)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCCCEeeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 899999999999999999 99999999999765
No 50
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.9e-47 Score=322.02 Aligned_cols=207 Identities=23% Similarity=0.310 Sum_probs=183.1
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
|.++++++|++|+||+|+ +.|++|.+++.+|.++++.++.|++++ +||++|.| ++||+|.|++++..... . ..
T Consensus 6 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~~F~aG~Dl~~~~~~~~--~-~~ 79 (259)
T PRK06494 6 STVERKGHVTIVTLNRPE--VMNALHLDAHFELEEVFDDFAADPEQW-VAIVTGAGDKAFSAGNDLKEQAAGGK--R-GW 79 (259)
T ss_pred eEEEeECCEEEEEEcCcc--ccCCCCHHHHHHHHHHHHHHhhCCCcE-EEEEEcCCCCceeccccHHhHhhcCc--c-hh
Confidence 678899999999999996 789999999999999999999999999 99999998 79999999998754211 0 11
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
.. ..+..+. .+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 80 ~~----~~~~~~~-~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vg- 151 (259)
T PRK06494 80 PE----SGFGGLT-SRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAEN-ATFALPEPRVGL-AALAGGLHRLPRQIG- 151 (259)
T ss_pred hh----HHHHHHH-HHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCC-CEEeCcccccCC-CCCchHHHHHHHHcC-
Confidence 11 1122333 346899999999999999999999999999999988 899999999999 67765 789999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
...+++++++|++++|+||+++||||+++++ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 152 ~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 214 (259)
T PRK06494 152 LKRAMGMILTGRRVTAREGLELGFVNEVVPA-GELLAAAERWADDILACS--PLSIRASKQAVYRG 214 (259)
T ss_pred HHHHHHHHHcCCcCCHHHHHHcCCCcEecCH-hHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998 889999999999999999 99999999998765
No 51
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=5.5e-47 Score=321.32 Aligned_cols=208 Identities=17% Similarity=0.319 Sum_probs=186.6
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC--CCccccCCChhhHHhcccccchH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH--GKFFSNGLDLAWAQAAGSRAGAR 79 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~--g~~F~~G~dl~~~~~~~~~~~~~ 79 (243)
+.++++++|++||||+|+ +.|++|.+++++|.+++++++.|+ ++ +||++|. |++||+|.|++++..... . .
T Consensus 6 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~-v~-~vvltg~~~~~~FcaG~Dl~~~~~~~~--~-~ 78 (261)
T PRK11423 6 VNVVTINKIATITFNNPA--KRNALSKVLIDDLMQALSDLNRPE-IR-VVILRAPSGSKVWSAGHDIHELPSGGR--D-P 78 (261)
T ss_pred eEEEeECCEEEEEEcCcc--ccCCCCHHHHHHHHHHHHHHhcCC-ce-EEEEECCCCCCeeECCcCHHHHhhccc--c-H
Confidence 678899999999999997 789999999999999999999887 99 9999986 389999999998753211 1 1
Q ss_pred HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchh-hHHHHHHHhC
Q 041046 80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDY-FTALFRAKVG 158 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~-g~~~l~~~~g 158 (243)
..+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++ |+.++++++|
T Consensus 79 ---~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~~~~g~~~~l~~~vg 153 (261)
T PRK11423 79 ---LSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAAST-STFAMTPANLGV-PYNLSGILNFTNDAG 153 (261)
T ss_pred ---HHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCC-CEecCchhhcCC-CCCccHHHHHHHHhH
Confidence 123445677889999999999999999999999999999999999988 899999999999 5555 5789999999
Q ss_pred CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
..++++++++|++++|+||+++||||+|+++ +++.+.+.++++++++.| |.+++.+|+.++..
T Consensus 154 -~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~~~~~ 216 (261)
T PRK11423 154 -FHIVKEMFFTASPITAQRALAVGILNHVVEV-EELEDFTLQMAHHISEKA--PLAIAVIKEQLRVL 216 (261)
T ss_pred -HHHHHHHHHcCCCcCHHHHHHcCCcCcccCH-HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhh
Confidence 9999999999999999999999999999997 899999999999999998 99999999999753
No 52
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=5e-47 Score=321.72 Aligned_cols=209 Identities=21% Similarity=0.335 Sum_probs=186.0
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
|.++++++|++|+||+| +.|++|.+++.+|.+++++++.|++++ +||++|.| ++||+|.|++++..... . ..
T Consensus 5 i~~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~~F~aG~Dl~~~~~~~~--~-~~ 77 (261)
T PRK03580 5 LHTTRNGSILEITLDRP---KANAIDAKTSFAMGEVFLNFRDDPELR-VAIITGAGEKFFSAGWDLKAAAEGEA--P-DA 77 (261)
T ss_pred EEEEEECCEEEEEECCc---cccCCCHHHHHHHHHHHHHHHhCCCcE-EEEEEeCCCCceecccCHHHHhccCc--c-hh
Confidence 67889999999999999 669999999999999999999999999 99999998 79999999998754211 1 11
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
.+.......+.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 78 ---~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~vg- 151 (261)
T PRK03580 78 ---DFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADN-ASFALPEAKLGI-VPDSGGVLRLPKRLP- 151 (261)
T ss_pred ---hhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCC-CEEeCcccccCc-CCCccHHHHHHHHhC-
Confidence 11112244677889999999999999999999999999999999987 899999999999 67766 679999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~ 226 (243)
...+++++++|++++|+||+++||||+|++. +++.+++.+++++++..| |.++..+|+.++...
T Consensus 152 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 215 (261)
T PRK03580 152 PAIANEMVMTGRRMDAEEALRWGIVNRVVPQ-AELMDRARELAQQLVNSA--PLAIAALKEIYRETS 215 (261)
T ss_pred HHHHHHHHHhCCccCHHHHHHcCCCcEecCH-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999997 899999999999999999 999999999997653
No 53
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.3e-47 Score=320.04 Aligned_cols=209 Identities=22% Similarity=0.285 Sum_probs=187.9
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||+| +.|++|.+++.+|.++++.++.|++++ +||++|.|++||+|.|++++..... . ...
T Consensus 6 i~~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVl~g~g~~FcaG~Dl~~~~~~~~-~--~~~ 78 (257)
T PRK06495 6 LKLEVSDHVAVVTLDNP---PVNALSRELRDELIAVFDEISERPDVR-VVVLTGAGKVFCAGADLKGRPDVIK-G--PGD 78 (257)
T ss_pred EEEEeeCCEEEEEECCC---ccccCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCCcccCcCHHhHhhccC-C--chh
Confidence 57888999999999999 569999999999999999999999999 9999999999999999998754211 1 122
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~ 161 (243)
...+...+.+++.++.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|+ . ++..++++++| ..
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~--~~~~~l~~~~g-~~ 153 (257)
T PRK06495 79 LRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASEN-AVFGLPEIDVGL-A--GGGKHAMRLFG-HS 153 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCC-CEeeChhhccCc-c--ccHHHHHHHhC-HH
Confidence 2334455677888999999999999999999999999999999999988 899999999999 4 44678999999 99
Q ss_pred HHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 162 ARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
++++|+++|++++|+||+++||||+++++ +++.+++.++++++++.| |.++..+|+.++..
T Consensus 154 ~a~~lll~g~~~~a~eA~~~GLv~~vv~~-~~~~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 214 (257)
T PRK06495 154 LTRRMMLTGYRVPAAELYRRGVIEACLPP-EELMPEAMEIAREIASKS--PLATRLAKDALNTI 214 (257)
T ss_pred HHHHHHHcCCeeCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 889999999999999999 99999999999865
No 54
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=7e-47 Score=318.85 Aligned_cols=206 Identities=21% Similarity=0.340 Sum_probs=182.3
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||+| +.|++|.+++.+|.++++.++.|++++ +||++|.|++||+|.|++++.. . .
T Consensus 3 v~~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~~l~~~~~~~~vr-~vVl~g~g~~FcaG~Dl~~~~~-------~-~ 70 (251)
T TIGR03189 3 VWLERDGKLLRLRLARP---KANIVDAAMIAALSAALGEHLEDSALR-AVLLDAEGPHFSFGASVAEHMP-------D-Q 70 (251)
T ss_pred EEEEeeCCEEEEEeCCC---CcCCCCHHHHHHHHHHHHHHHcCCCce-EEEEECCCCceecCcChhhhCc-------h-h
Confidence 56788999999999999 569999999999999999999999999 9999999999999999997532 1 1
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~ 161 (243)
...+...+.+++.++.++||||||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|+++++++++++| ..
T Consensus 71 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~~~~~l~~~vg-~~ 147 (251)
T TIGR03189 71 CAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPD-AKLGQPEIVLGV-FAPAASCLLPERMG-RV 147 (251)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCC-CEEeCchhhcCC-CCCchHHHHHHHhC-HH
Confidence 1223344567888999999999999999999999999999999999988 899999999999 67677889999999 99
Q ss_pred HHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHH-HHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046 162 ARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRL-AKQMAGRKWAGEVYAEIRKSLYPDLC 227 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~-a~~la~~~~~~~~~~~~K~~l~~~~~ 227 (243)
.+++++++|++++|+||+++||||+|+++ ++ +++.++ +++++..| |.++..+|+.++....
T Consensus 148 ~a~~l~ltg~~~~a~eA~~~Glv~~v~~~-~~--~~a~~~~a~~la~~~--p~a~~~~K~~l~~~~~ 209 (251)
T TIGR03189 148 AAEDLLYSGRSIDGAEGARIGLANAVAED-PE--NAALAWFDEHPAKLS--ASSLRFAVRAARLGMN 209 (251)
T ss_pred HHHHHHHcCCCCCHHHHHHCCCcceecCc-HH--HHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999986 33 466666 68999999 9999999999876543
No 55
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.2e-47 Score=318.93 Aligned_cols=205 Identities=21% Similarity=0.288 Sum_probs=183.5
Q ss_pred eEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHH
Q 041046 5 EKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLY 84 (243)
Q Consensus 5 ~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~ 84 (243)
+++++|++|+||+| +.|++|.+++.+|.++++.++.|++++ +||++|.|++||+|.|++++... +. ......
T Consensus 7 ~~~~~v~~itlnrp---~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~G~~F~aG~Dl~~~~~~---~~-~~~~~~ 78 (249)
T PRK07938 7 TPEPGIAEVTVDYP---PVNALPSAGWFALADAITAAGADPDTR-VVVLRAEGRGFNAGVDIKELQAT---PG-FTALID 78 (249)
T ss_pred ccCCCEEEEEECCC---CcccCCHHHHHHHHHHHHHhhcCCCeE-EEEEECCCCceecCcCHHHHhhc---cc-hhHHHH
Confidence 45789999999999 569999999999999999999999999 99999999999999999987541 11 122222
Q ss_pred HHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHH
Q 041046 85 MVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARR 164 (243)
Q Consensus 85 ~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~ 164 (243)
....+.+++.++.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|+ + +++.++++++| ...++
T Consensus 79 ~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~-a~f~~pe~~~G~-~--g~~~~l~~~vg-~~~a~ 153 (249)
T PRK07938 79 ANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDD-ATFGLPEVDRGA-L--GAATHLQRLVP-QHLMR 153 (249)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCC-CEeeCccceecC-c--hhHHHHHHhcC-HHHHH
Confidence 3344567888999999999999999999999999999999999988 899999999999 4 44678999999 99999
Q ss_pred HHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 165 DVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 165 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
+++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 154 ~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 211 (249)
T PRK07938 154 ALFFTAATITAAELHHFGSVEEVVPR-DQLDEAALEVARKIAAKD--TRVIRAAKEALNGI 211 (249)
T ss_pred HHHHhCCcCCHHHHHHCCCccEEeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 99999999999999999999999997 899999999999999998 99999999999765
No 56
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=9e-47 Score=321.95 Aligned_cols=211 Identities=19% Similarity=0.316 Sum_probs=186.4
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
|.++++++|++|+||+|+ +.|++|.+|+.+|.++++.++.|++++ +||++|.| ++||+|.|++++..... .. ..
T Consensus 15 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~~~-~~-~~ 89 (273)
T PRK07396 15 ILYKSADGIAKITINRPE--VRNAFRPKTVKEMIDAFADARDDDNIG-VIILTGAGDKAFCSGGDQKVRGYGGY-VD-DD 89 (273)
T ss_pred eEEEecCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEEeCCCCceEeCcChhhhhcccc-cc-hh
Confidence 578889999999999997 789999999999999999999999999 99999998 69999999998643100 01 11
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchh-hHHHHHHHhCC
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDY-FTALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~-g~~~l~~~~g~ 159 (243)
....+ ...+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++ ++.++++++|
T Consensus 90 ~~~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~~~~~~l~~~vG- 164 (273)
T PRK07396 90 GVPRL--NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADN-AIFGQTGPKVGS-FDGGYGASYLARIVG- 164 (273)
T ss_pred hhhhh--HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCC-cEEecccccccc-cCCchHHHHHHHHhh-
Confidence 11111 1345777899999999999999999999999999999999988 899999999999 6665 4789999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
..++++++++|+.++|+||+++||||+|+|+ +++.+++.++|++++..| |.++..+|+.++..
T Consensus 165 ~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 227 (273)
T PRK07396 165 QKKAREIWFLCRQYDAQEALDMGLVNTVVPL-ADLEKETVRWCREMLQNS--PMALRCLKAALNAD 227 (273)
T ss_pred HHHHHHHHHhCCCcCHHHHHHcCCcCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 9999999999999999999999999999997 899999999999999999 99999999999765
No 57
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.9e-47 Score=322.79 Aligned_cols=216 Identities=24% Similarity=0.319 Sum_probs=187.7
Q ss_pred ceeeEeC-CEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccch-H
Q 041046 2 CTLEKHG-DVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGA-R 79 (243)
Q Consensus 2 i~~~~~~-~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~-~ 79 (243)
|.+++++ +|++|+||+|+ +.|++|.+++++|.++++.++.|++++ +||++|.|++||+|.|++++......+.. .
T Consensus 7 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 83 (272)
T PRK06210 7 VLYEVADSGVAVITLNRPD--RLNAWTPVMEAEVYAAMDRAEADPAVR-VIVLTGAGRGFCAGADMGELQTIDPSDGRRD 83 (272)
T ss_pred EEEEECCCCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHhccCCCee-EEEEECCCCCcccccCHHHHhccCccccccc
Confidence 5788888 99999999997 889999999999999999999999999 99999999999999999987542110000 0
Q ss_pred ----HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHH
Q 041046 80 ----ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFR 154 (243)
Q Consensus 80 ----~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~ 154 (243)
.........+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~ 161 (272)
T PRK06210 84 TDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADG-AKFTTAFARRGL-IAEHGISWILP 161 (272)
T ss_pred ccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCC-CEEechHHhcCC-CCCCchhhhhH
Confidence 000111112456678899999999999999999999999999999999988 899999999999 78876 67899
Q ss_pred HHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcC-CCChhHHHHHHHHhhhHH
Q 041046 155 AKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR-KWAGEVYAEIRKSLYPDL 226 (243)
Q Consensus 155 ~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~-~~~~~~~~~~K~~l~~~~ 226 (243)
+++| ..++++|+++|++++|++|+++||||+++++ +++.+++.++++++++. | |.++..+|+.++...
T Consensus 162 ~~ig-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~i~~~~~--p~a~~~~K~~l~~~~ 230 (272)
T PRK06210 162 RLVG-HANALDLLLSARTFYAEEALRLGLVNRVVPP-DELMERTLAYAEDLARNVS--PASMAVIKRQLYEDA 230 (272)
T ss_pred hhhC-HHHHHHHHHcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcc
Confidence 9999 9999999999999999999999999999998 88999999999999985 7 999999999998653
No 58
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-46 Score=322.59 Aligned_cols=216 Identities=21% Similarity=0.332 Sum_probs=188.7
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccc------
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSR------ 75 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~------ 75 (243)
|.++++++|++|+||+|+ +.|++|.+++++|.+++++++.|++++ +||+||.|++||+|.|++++......
T Consensus 6 v~~~~~~~Va~ItlnrP~--~~Nal~~~~~~eL~~~l~~~~~d~~vr-vvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~ 82 (288)
T PRK08290 6 VRYEVAGRIARITLNRPE--ARNAQNRQMLYELDAAFRRAEADDAVR-VIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQ 82 (288)
T ss_pred EEEEeeCCEEEEEecCcc--ccCCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCccccCCCcccccccccccccccc
Confidence 678899999999999997 789999999999999999999999999 99999999999999999976321000
Q ss_pred -----------cchHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCC
Q 041046 76 -----------AGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGAT 144 (243)
Q Consensus 76 -----------~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~ 144 (243)
+............+.+++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~-a~f~~pe~~lGl- 160 (288)
T PRK08290 83 HPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDD-AFFSDPVVRMGI- 160 (288)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCC-CEecCcccccCc-
Confidence 0001112222334567788899999999999999999999999999999999988 899999999998
Q ss_pred CchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhh
Q 041046 145 LPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYP 224 (243)
Q Consensus 145 ~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~ 224 (243)
|+.+..++++++| ..+++++++||+.++|+||+++||||+++++ +++.+++.++++++++.| +.++..+|+.++.
T Consensus 161 -~~~~~~~l~~~iG-~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~ 235 (288)
T PRK08290 161 -PGVEYFAHPWELG-PRKAKELLFTGDRLTADEAHRLGMVNRVVPR-DELEAETLELARRIAAMP--PFGLRLTKRAVNQ 235 (288)
T ss_pred -CcchHHHHHHHhh-HHHHHHHHHcCCCCCHHHHHHCCCccEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHH
Confidence 3456677899999 9999999999999999999999999999998 889999999999999999 9999999999987
Q ss_pred HHH
Q 041046 225 DLC 227 (243)
Q Consensus 225 ~~~ 227 (243)
...
T Consensus 236 ~~~ 238 (288)
T PRK08290 236 TLD 238 (288)
T ss_pred HHh
Confidence 644
No 59
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=1.2e-46 Score=318.77 Aligned_cols=213 Identities=27% Similarity=0.390 Sum_probs=191.7
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
+.++.+++|++|+||+|+ +.|++|.+++.+|.++++.++.|++++ +||++|.|++||+|.|++++... . +...
T Consensus 7 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vvltg~g~~FsaG~Dl~~~~~~-~---~~~~ 79 (257)
T COG1024 7 ILVEREDGIAVITLNRPE--KLNALNLEMLDELAEALDEAEADPDVR-VVVLTGAGKAFSAGADLKELLSP-E---DGNA 79 (257)
T ss_pred eEEEeeCCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCceecccCHHHHhcc-c---chhH
Confidence 567788889999999997 789999999999999999999999999 99999999999999999998740 1 1122
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCch-hhHHHHHHHhCCH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPD-YFTALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~-~g~~~l~~~~g~~ 160 (243)
...+....+.++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|+ ++++++++.+| .
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~-a~f~~pe~~iGl-~Pg~g~~~~l~r~~G-~ 156 (257)
T COG1024 80 AENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAED-AKFGLPEVNLGL-LPGDGGTQRLPRLLG-R 156 (257)
T ss_pred HHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCC-cEecCccccccc-CCCCcHHHHHHHhcC-H
Confidence 2256666788999999999999999999999999999999999999988 899999999999 785 45789999999 9
Q ss_pred HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC 227 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~ 227 (243)
..++++++||+.++++||+++||||+++++.+++.+.+.+++++++. | |.++..+|+.++....
T Consensus 157 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~--~~a~~~~k~~~~~~~~ 220 (257)
T COG1024 157 GRAKELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-P--PLALAATKRLVRAALE 220 (257)
T ss_pred HHHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-C--HHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999757999999999999998 6 8999999999887643
No 60
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-46 Score=318.16 Aligned_cols=213 Identities=23% Similarity=0.324 Sum_probs=187.4
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+|+ +.|++|.+++++|.++++.++.|++++ +||++|.|++||+|.|++++..... .....
T Consensus 5 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~~--~~~~~ 79 (262)
T PRK07509 5 VSVTIEDGIADVRLNRPD--KMNALDFAMFEELIATIKRLKKDRGIR-AVILSGEGGAFCAGLDVKSVASSPG--NAVKL 79 (262)
T ss_pred EEEEeeCCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhhCCCCe-EEEEECCCCCcCCCcCHHHHhcccc--hhhhh
Confidence 678899999999999997 899999999999999999999999999 9999999999999999998764211 11111
Q ss_pred ----HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHH
Q 041046 82 ----LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAK 156 (243)
Q Consensus 82 ----~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~ 156 (243)
.......+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~ 157 (262)
T PRK07509 80 LFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPD-TKLSIMEAKWGL-VPDMAGTVSLRGL 157 (262)
T ss_pred HhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCC-CEeecchhccCC-CCCchHHHHHHHH
Confidence 1122234566777888999999999999999999999999999999988 899999999999 67776 6899999
Q ss_pred hCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046 157 VGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC 227 (243)
Q Consensus 157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~ 227 (243)
+| ...+++++++|++++|+||+++||||+++++ +.+++.++++++++.| |.++..+|+.++....
T Consensus 158 ~g-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~---~~~~a~~~a~~l~~~~--~~~~~~~K~~l~~~~~ 222 (262)
T PRK07509 158 VR-KDVARELTYTARVFSAEEALELGLVTHVSDD---PLAAALALAREIAQRS--PDAIAAAKRLINRSWT 222 (262)
T ss_pred hC-HHHHHHHHHcCCCcCHHHHHHcCChhhhhch---HHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhc
Confidence 99 9999999999999999999999999999954 6789999999999998 9999999999987643
No 61
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.4e-46 Score=313.66 Aligned_cols=206 Identities=19% Similarity=0.261 Sum_probs=184.4
Q ss_pred CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
||.++++++|++|+||+|+ +.|++|.+++.+|.++++.++.|++++ +||++|.|+.||+|.|++++... .
T Consensus 1 ~i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~a~~~~~~d~~vr-~vVl~g~g~~F~aG~Dl~~~~~~------~- 70 (248)
T PRK06072 1 MIKVESREGYAIVTMSRPD--KLNALNLEMRNEFISKLKQINADPKIR-VVIVTGEGRAFCVGADLSEFAPD------F- 70 (248)
T ss_pred CeEEEEECCEEEEEECCcc--cccCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCCcccCcCHHHHhhh------h-
Confidence 7899999999999999997 789999999999999999999999999 99999999999999999987531 1
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
...+.+.+..++..+.++||||||+|||+|+|+|++++++||+||++++ ++|++||.++|+ +|++| ++++++.+|
T Consensus 71 -~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~~~~~~Gl-~p~~g~~~~l~~~~g- 146 (248)
T PRK06072 71 -AIDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRD-VKFVTAFQRLGL-ASDTGVAYFLLKLTG- 146 (248)
T ss_pred -HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC-CEEecchhhcCc-CCCchHHHHHHHHhh-
Confidence 1223445677888999999999999999999999999999999999988 899999999999 67766 678999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC 227 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~ 227 (243)
. ++++++++|++++|+||+++||||.+ +++.+++.++|++++..| +.++..+|+.++....
T Consensus 147 ~-~a~~lll~g~~~~a~eA~~~Glv~~~----~~~~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~ 207 (248)
T PRK06072 147 Q-RFYEILVLGGEFTAEEAERWGLLKIS----EDPLSDAEEMANRISNGP--FQSYIAAKRMINLVLY 207 (248)
T ss_pred H-HHHHHHHhCCccCHHHHHHCCCcccc----chHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhh
Confidence 7 78999999999999999999999953 356789999999999998 9999999999987643
No 62
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.6e-46 Score=320.51 Aligned_cols=216 Identities=22% Similarity=0.289 Sum_probs=187.5
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhccccc---c-
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRA---G- 77 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~---~- 77 (243)
|.++++++|++|+||+|+ +.|++|.+|+.+|.+++++++.|++++ +||++|.|++||+|.|++++....... .
T Consensus 12 v~~e~~~~V~~Itlnrp~--~~Nal~~~m~~eL~~al~~~~~d~~vr-vvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~ 88 (302)
T PRK08272 12 MTYEVTGRIARITLNRPE--KGNAITADTPLELRAAVERADLDPGVH-VILVSGAGKGFCAGYDLSAYAEGSSSGGGGGA 88 (302)
T ss_pred EEEEeECCEEEEEecCcc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEEcCCCCcccCcCHHHHhhcccccccccc
Confidence 678889999999999997 899999999999999999999999999 999999999999999999875421100 0
Q ss_pred ----------------hHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeeccccc
Q 041046 78 ----------------ARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDI 141 (243)
Q Consensus 78 ----------------~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~ 141 (243)
+......+...+.+++.++.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~-a~f~~pe~~~ 167 (302)
T PRK08272 89 YPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADD-AKIGYPPTRV 167 (302)
T ss_pred cccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCC-CEecCcchhc
Confidence 00001123455677888999999999999999999999999999999999998 8999999997
Q ss_pred CCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 041046 142 GATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKS 221 (243)
Q Consensus 142 Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~ 221 (243)
|. +|.. .++++++| .++|+++++||++++|+||+++||||+++|+ +++.+++.++|++|+..| +.++..+|+.
T Consensus 168 gg-~~~~--~~~~~~vG-~~~A~~llltG~~i~a~eA~~~GLv~~vv~~-~~l~~~a~~la~~ia~~~--~~a~~~~K~~ 240 (302)
T PRK08272 168 WG-VPAT--GMWAYRLG-PQRAKRLLFTGDCITGAQAAEWGLAVEAVPP-EELDERTERLVERIAAVP--VNQLAMVKLA 240 (302)
T ss_pred cc-CChH--HHHHHHhh-HHHHHHHHHcCCccCHHHHHHcCCCceecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHH
Confidence 55 3433 35778999 9999999999999999999999999999997 899999999999999999 9999999999
Q ss_pred hhhHHHH
Q 041046 222 LYPDLCG 228 (243)
Q Consensus 222 l~~~~~~ 228 (243)
++.....
T Consensus 241 l~~~~~~ 247 (302)
T PRK08272 241 VNSALLQ 247 (302)
T ss_pred HHHHHHH
Confidence 9876543
No 63
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.5e-46 Score=310.94 Aligned_cols=200 Identities=23% Similarity=0.348 Sum_probs=179.7
Q ss_pred CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
||.++++++|++|+||+|+ +.|++|.+++.+|.+++++++.+ +++ +||++|.|++||+|.|+++... .
T Consensus 1 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~~-~vr-~vvl~g~g~~F~aG~Dl~~~~~-------~- 68 (243)
T PRK07854 1 MIGVTRDGQVLTIELQRPE--RRNALNAELCEELREAVRKAVDE-SAR-AIVLTGQGTVFCAGADLSGDVY-------A- 68 (243)
T ss_pred CceEEEeCCEEEEEeCCCc--cccCCCHHHHHHHHHHHHHHhcC-Cce-EEEEECCCCceecccCCccchh-------H-
Confidence 6889999999999999997 88999999999999999999965 899 9999999999999999985211 1
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
..+...+.+++.++.++|||+||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 69 --~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~~G- 143 (243)
T PRK07854 69 --DDFPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPE-AYFQFPVAKYGI-ALDNWTIRRLSSLVG- 143 (243)
T ss_pred --HHHHHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCC-CEEecccccccc-CCCccHHHHHHHHhC-
Confidence 123344677888999999999999999999999999999999999988 899999999999 66665 689999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhh
Q 041046 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYP 224 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~ 224 (243)
...+++++++|++++|+||+++||||+|++. . ++.++++++++.| +.++..+|+.++.
T Consensus 144 ~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~----~-~a~~~a~~l~~~~--~~a~~~~K~~l~~ 201 (243)
T PRK07854 144 GGRARAMLLGAEKLTAEQALATGMANRIGTL----A-DAQAWAAEIAGLA--PLALQHAKRVLND 201 (243)
T ss_pred HHHHHHHHHcCCCcCHHHHHHCCCcccccCH----H-HHHHHHHHHHhCC--HHHHHHHHHHHHc
Confidence 9999999999999999999999999999752 2 7899999999998 9999999999875
No 64
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-45 Score=313.60 Aligned_cols=213 Identities=24% Similarity=0.364 Sum_probs=186.2
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+|+ +.|++|.+++.+|.++++.++.|++++ +||++|.|++||+|.|++++..... .....
T Consensus 8 i~~~~~~~v~~i~lnrp~--~~Nal~~~~~~el~~~l~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~--~~~~~ 82 (260)
T PRK07827 8 VRYAVDGGVATLTLDSPH--NRNALSARLVAQLHDGLRAAAADPAVR-AVVLTHTGGTFCAGADLSEAGGGGG--DPYDA 82 (260)
T ss_pred eEEEeeCCEEEEEEcCcc--ccCCCCHHHHHHHHHHHHHHhcCCCee-EEEEEcCCCCccCCcChHHHhhccc--CchhH
Confidence 577889999999999997 889999999999999999999999999 9999999999999999998754211 11112
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhH-HHHHHHhCCH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFT-ALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~-~~l~~~~g~~ 160 (243)
...+...+.++++++..+||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++|+ .++++. + .
T Consensus 83 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~l-~-~ 158 (260)
T PRK07827 83 AVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPE-STFALTEARIGV-APAIISLTLLPRL-S-P 158 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCC-CEEeCcccccCC-CCCcccchhHHhh-h-H
Confidence 2234556778899999999999999999999999999999999999987 899999999999 788874 567765 5 5
Q ss_pred HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHH
Q 041046 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCG 228 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~ 228 (243)
..+++++++|++++|+||+++||||++++ ++.+++.++++++++.| +.++..+|+.++.....
T Consensus 159 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~---~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~ 221 (260)
T PRK07827 159 RAAARYYLTGEKFGAAEAARIGLVTAAAD---DVDAAVAALLADLRRGS--PQGLAESKALTTAAVLA 221 (260)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCcccchH---HHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhcC
Confidence 68999999999999999999999999963 58999999999999998 99999999999876543
No 65
>PLN02921 naphthoate synthase
Probab=100.00 E-value=1.7e-45 Score=319.86 Aligned_cols=211 Identities=20% Similarity=0.332 Sum_probs=185.7
Q ss_pred ceeeE--eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccch
Q 041046 2 CTLEK--HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGA 78 (243)
Q Consensus 2 i~~~~--~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~ 78 (243)
|.+++ +++|++|+||+|+ +.|++|.+++.+|.++++.++.|++++ +||++|.| ++||+|.|++++..... ..
T Consensus 67 i~~~~~~~~~Va~ItLnrP~--~~Nal~~~~~~eL~~al~~~~~d~~vr-vVVLtg~G~k~FcaG~Dl~~~~~~~~-~~- 141 (327)
T PLN02921 67 IIYEKAVGEGIAKITINRPE--RRNAFRPRTVKELQRAFNDARDDSSVG-VIILTGKGTKAFCSGGDQAVRGKDGY-VG- 141 (327)
T ss_pred EEEEEecCCCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHhhCCCce-EEEEecCCCCceecCcChhhhhcccc-cc-
Confidence 56777 5889999999997 889999999999999999999999999 99999999 89999999997643100 00
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchh-hHHHHHHHh
Q 041046 79 RERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDY-FTALFRAKV 157 (243)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~-g~~~l~~~~ 157 (243)
......+ ...+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||.++|+ +|.+ |+.++++++
T Consensus 142 ~~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~-A~f~~pe~~~Gl-~p~~gg~~~L~rli 217 (327)
T PLN02921 142 PDDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADN-AVFGQTGPKVGS-FDAGYGSSIMARLV 217 (327)
T ss_pred hhHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCC-CEEeCcccccCC-CCCccHHHHHHHHh
Confidence 1111111 1345778899999999999999999999999999999999988 899999999999 5655 578999999
Q ss_pred CCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
| ..++++++++|+.++|+||+++||||+|++. +++.+++.+++++|++.| +.+++.+|+.++..
T Consensus 218 G-~~~A~ellltG~~~~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--p~al~~~K~~l~~~ 281 (327)
T PLN02921 218 G-QKKAREMWFLARFYTASEALKMGLVNTVVPL-DELEGETVKWCREILRNS--PTAIRVLKSALNAA 281 (327)
T ss_pred C-HHHHHHHHHcCCcCCHHHHHHCCCceEEeCH-HHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHh
Confidence 9 9999999999999999999999999999998 899999999999999999 99999999999765
No 66
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.6e-45 Score=309.28 Aligned_cols=208 Identities=16% Similarity=0.222 Sum_probs=181.7
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+|+ +.|++|.+++.+|.+++++++ ++++ +||++|.|++||+|.|++++..... . ...
T Consensus 6 i~~~~~~~i~~itlnrp~--~~Nal~~~~~~~L~~~l~~~~--~~vr-~vVl~g~g~~FsaG~Dl~~~~~~~~-~--~~~ 77 (255)
T PRK07112 6 IRVRQQGDVCFLQLHRPE--AQNTINDRLIAECMDVLDRCE--HAAT-IVVLEGLPEVFCFGADFSAIAEKPD-A--GRA 77 (255)
T ss_pred EEEEeeCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHhh--cCce-EEEEEcCCCCcccCcCHHHHhhccc-c--chh
Confidence 578899999999999997 789999999999999999998 4688 9999999999999999998754211 1 111
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~ 161 (243)
.......+.+++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++++.++++++| ..
T Consensus 78 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl-~p~~~~~~l~~~vg-~~ 154 (255)
T PRK07112 78 DLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADET-APFSLSELLFGL-IPACVLPFLIRRIG-TQ 154 (255)
T ss_pred hhhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCC-CEEeCchhhhcc-CcchhhHHHHHHhC-HH
Confidence 1111334567888999999999999999999999999999999999987 899999999999 78877788999999 99
Q ss_pred HHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 162 ARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
++++++++|++++|+||+++||||+|+++ ++ ..+.+++++++..| |.++..+|+.++..
T Consensus 155 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~--~~~~~~a~~l~~~~--p~a~~~~K~~~~~~ 213 (255)
T PRK07112 155 KAHYMTLMTQPVTAQQAFSWGLVDAYGAN-SD--TLLRKHLLRLRCLN--KAAVARYKSYASTL 213 (255)
T ss_pred HHHHHHHhCCcccHHHHHHcCCCceecCc-HH--HHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence 99999999999999999999999999997 43 25788999999998 99999999998754
No 67
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=6.6e-45 Score=310.97 Aligned_cols=214 Identities=21% Similarity=0.262 Sum_probs=177.3
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHh-----CCCCCeEEEEecC-CCccccCCChhhHHhcccc
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKA-----EATPGSALITTSH-GKFFSNGLDLAWAQAAGSR 75 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~-----d~~i~~vvvl~g~-g~~F~~G~dl~~~~~~~~~ 75 (243)
|.++++++|++|++| |. +.|++|.+++.+|.+++++++. |++++ +||++|. |++||+|.|++++.....
T Consensus 19 i~~e~~~~ia~itl~-p~--~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vr-vVVltg~~gk~FcaG~Dl~~~~~~~~- 93 (287)
T PRK08788 19 VYYEEERNVMWMYMR-AQ--PRPCFNLELLDDIMNLQRAIRQRLDDSGLPVD-FWVLASDVPGVFNLGGDLALFAELIR- 93 (287)
T ss_pred EEEEccCCEEEEEEC-CC--CCCCCCHHHHHHHHHHHHHHHhhccCCCCCeE-EEEEEcCCCCceEeCcCHHHHhhhcc-
Confidence 567778999999996 76 8999999999999999999998 89999 9999999 799999999998753211
Q ss_pred cchHHHHHHHHHhHHHHHHHHh---cCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HH
Q 041046 76 AGARERLLYMVESFRPVVAAMM---DLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TA 151 (243)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~---~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~ 151 (243)
..+......+...+.+.+.++. .+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pev~lGl-~p~~g~~~ 171 (287)
T PRK08788 94 AGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERG-AKMGFPEILFNL-FPGMGAYS 171 (287)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCC-CEeeCchhhhCc-CCCchHHH
Confidence 1111111122222233333333 799999999999999999999999999999988 899999999999 67765 68
Q ss_pred HHHHHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhh
Q 041046 152 LFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYP 224 (243)
Q Consensus 152 ~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~ 224 (243)
++++++| ..++++++++|+.++|+||+++||||+++|+ +++.+++.+++++++..|..+.++...|+.++.
T Consensus 172 ~l~~~vG-~~~A~ellltG~~l~A~eA~~~GLV~~vv~~-~el~~~a~~~a~~ia~~~~~~~a~k~~~~~~~~ 242 (287)
T PRK08788 172 FLARRVG-PKLAEELILSGKLYTAEELHDMGLVDVLVED-GQGEAAVRTFIRKSKRKLNGWRAMLRARRRVNP 242 (287)
T ss_pred HHHHHhh-HHHHHHHHHcCCCCCHHHHHHCCCCcEecCc-hHHHHHHHHHHHHHhcCccHHHHHHHHHHhhcc
Confidence 9999999 9999999999999999999999999999998 889999999999999764335666666666544
No 68
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=5.6e-45 Score=314.77 Aligned_cols=216 Identities=18% Similarity=0.280 Sum_probs=183.3
Q ss_pred ceeeE--eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-------CccccCCChhhHHhc
Q 041046 2 CTLEK--HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-------KFFSNGLDLAWAQAA 72 (243)
Q Consensus 2 i~~~~--~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-------~~F~~G~dl~~~~~~ 72 (243)
|.+++ +++|++||||+|+ +.|++|.+++.+|.++++.++.|++++ +||++|.| ++||+|.|++++...
T Consensus 25 i~~~~~~~~~va~itlnrP~--~~Nal~~~~~~~l~~al~~~~~d~~vr-vvVltg~g~~~~~~~~~FcaG~Dl~~~~~~ 101 (302)
T PRK08321 25 ITYHRAVDQGTVRIAFDRPE--VRNAFRPHTVDELYRALDHARMSPDVG-CVLLTGNGPSPKDGGWAFCSGGDQRIRGRD 101 (302)
T ss_pred EEEEEecCCCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHHhhCCCcE-EEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence 56677 8899999999997 889999999999999999999999999 99999988 599999999875321
Q ss_pred c----c-ccchHHHHHHHH-HhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEe-cCCcceeecccccCCCC
Q 041046 73 G----S-RAGARERLLYMV-ESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMR-RDKGVLYMSEVDIGATL 145 (243)
Q Consensus 73 ~----~-~~~~~~~~~~~~-~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~-~~~~~f~~pe~~~Gl~~ 145 (243)
. . .+.......+.. ..+.++...+.++||||||+|||+|+|||++|+++||+||++ ++ ++|++||+++|+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~-a~f~~pe~~~Gl~p 180 (302)
T PRK08321 102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREH-ARFKQTDADVGSFD 180 (302)
T ss_pred cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCC-CEEECCccccccCC
Confidence 0 0 000000001111 112356778889999999999999999999999999999999 46 89999999999943
Q ss_pred chhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 146 PDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 146 p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
|.+++.++++++| ...+++++++|++++|+||+++||||+++++ +++.+++.++++++++.| +.+++.+|+.++..
T Consensus 181 ~~~~~~~L~r~vG-~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 256 (302)
T PRK08321 181 GGYGSAYLARQVG-QKFAREIFFLGRTYSAEEAHDMGAVNAVVPH-AELETEALEWAREINGKS--PTAMRMLKYAFNLT 256 (302)
T ss_pred CchHHHHHHHHhC-HHHHHHHHHcCCccCHHHHHHCCCceEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 4455789999999 9999999999999999999999999999997 889999999999999999 99999999998754
No 69
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.4e-45 Score=312.98 Aligned_cols=214 Identities=19% Similarity=0.166 Sum_probs=179.6
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhh-HHh---cccccc
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAW-AQA---AGSRAG 77 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~-~~~---~~~~~~ 77 (243)
|.++++++|++|+||+|+ +.|++|.+++.+|.++++.++.|++++ +|||||.|++||+|.|+++ +.. ....+.
T Consensus 7 v~~~~~~~Va~ItLnrP~--~~NAl~~~~~~eL~~al~~~~~d~~vr-vvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~ 83 (298)
T PRK12478 7 LLYTTAGPVATITLNRPE--QLNTIVPPMPDEIEAAIGLAERDQDIK-VIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDG 83 (298)
T ss_pred EEEeccCCEEEEEecCCc--ccCCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCcccCcCccccccccchhccccc
Confidence 567889999999999997 899999999999999999999999999 9999999999999999985 211 000000
Q ss_pred --h-HHHHH---HHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeeccccc-CCCCchhhH
Q 041046 78 --A-RERLL---YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDI-GATLPDYFT 150 (243)
Q Consensus 78 --~-~~~~~---~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~-Gl~~p~~g~ 150 (243)
+ ..... .........+.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++ |+ +++ +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-A~f~~pe~~l~G~-~~~-~~ 160 (298)
T PRK12478 84 RWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDD-AVIGTPYSRMWGA-YLT-GM 160 (298)
T ss_pred ccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCC-cEEeccccccccC-Cch-hH
Confidence 0 01110 00011234566788999999999999999999999999999999988 8999999997 88 442 23
Q ss_pred HHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046 151 ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC 227 (243)
Q Consensus 151 ~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~ 227 (243)
. .+++| ..++++|+++|++++|+||+++||||+||++ +++.+++.++|++++..| |.+++.+|+.++....
T Consensus 161 ~--~~~vG-~~~A~~llltg~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~ 231 (298)
T PRK12478 161 W--LYRLS-LAKVKWHSLTGRPLTGVQAAEAELINEAVPF-ERLEARVAEVATELARIP--LSQLQAQKLIVNQAYE 231 (298)
T ss_pred H--HHHhh-HHHHHHHHHcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHH
Confidence 2 35699 9999999999999999999999999999998 899999999999999999 9999999999987544
No 70
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=4.7e-45 Score=319.77 Aligned_cols=213 Identities=20% Similarity=0.216 Sum_probs=185.5
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
|.++++++|++|+||+|+ +.|++|.+|+.+|.++++.++.|++++ +||++|.| ++||+|.|++++..... +.+..
T Consensus 5 v~~~~~~~v~~itLnrP~--~~Nal~~~m~~~L~~~l~~~~~d~~vr-vvVltg~g~~~F~aG~Dl~~~~~~~~-~~~~~ 80 (342)
T PRK05617 5 VLAEVEGGVGVITLNRPK--ALNALSLEMIRAIDAALDAWEDDDAVA-AVVIEGAGERGFCAGGDIRALYEAAR-AGDPL 80 (342)
T ss_pred EEEEEECCEEEEEECCCc--cccCCCHHHHHHHHHHHHHHhhCCCeE-EEEEEcCCCCceeCCcCHHHHHhhhc-cCCch
Confidence 678899999999999997 889999999999999999999999999 99999999 99999999998754211 11111
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+.....+++.++.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++++++.|
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~-a~f~~pe~~lGl-~P~~g~~~~L~r~~g- 157 (342)
T PRK05617 81 AADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTER-TKMAMPETGIGF-FPDVGGTYFLSRAPG- 157 (342)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCC-CEeeCCccccCc-CCCccceeEehhccc-
Confidence 11133334457888999999999999999999999999999999999988 899999999999 78777 578888755
Q ss_pred HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHH------------------------------------------
Q 041046 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEA------------------------------------------ 197 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~------------------------------------------ 197 (243)
..+++++++|+.++|+||+++||||+++++ +++.+.
T Consensus 158 -~~a~~llltG~~i~A~eA~~~GLv~~vv~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 235 (342)
T PRK05617 158 -ALGTYLALTGARISAADALYAGLADHFVPS-ADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDEC 235 (342)
T ss_pred -HHHHHHHHcCCCCCHHHHHHcCCcceecCH-HHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHH
Confidence 578999999999999999999999999998 778776
Q ss_pred --------------------HHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 198 --------------------SMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 198 --------------------a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
+.+++++|++.| |.++..+|+.++..
T Consensus 236 ~~~~~~~~~~~~l~~~~~~~a~~~a~~i~~~s--p~a~~~~k~~l~~~ 281 (342)
T PRK05617 236 FAGDTVEDIIAALEADGGEFAAKTADTLRSRS--PTSLKVTLEQLRRA 281 (342)
T ss_pred hCCCCHHHHHHHHHhccHHHHHHHHHHHHhCC--cHHHHHHHHHHHHh
Confidence 889999999999 99999999999754
No 71
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=9.3e-46 Score=295.07 Aligned_cols=224 Identities=21% Similarity=0.309 Sum_probs=202.9
Q ss_pred eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcc--cccch-----H
Q 041046 7 HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAG--SRAGA-----R 79 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~--~~~~~-----~ 79 (243)
++-|+++.+|||. +.|+++..++.|+.++|+.+.+||+++ +||++|.|+.||+|+|++...... ..+.+ .
T Consensus 29 ~~~V~hv~lnRPs--k~Nal~~~~w~E~~~cf~~l~~dpdcr-~iilsg~GKhFcaGIDl~~~~~~~~~~~~~dd~aR~g 105 (292)
T KOG1681|consen 29 QPFVYHVQLNRPS--KLNALNKVFWREFKECFDSLDRDPDCR-AIILSGAGKHFCAGIDLNDMASDRILQPEGDDVARKG 105 (292)
T ss_pred CCeEEEEEecCcc--hhhhhhHHHHHHHHHHHHhhccCCCce-EEEEecCCcceecccCcchhhhhhccccccchHhhhh
Confidence 3569999999998 999999999999999999999999999 999999999999999988664321 10111 3
Q ss_pred HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhH-HHHHHHhC
Q 041046 80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFT-ALFRAKVG 158 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~-~~l~~~~g 158 (243)
..+++++..+++.+..|.+||||+|++|||+|+|+|+.|..+||+||+++| ++|...|+.+|+ ..+.|+ .|||+.+|
T Consensus 106 ~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqD-AffsvkEVDvgl-aADvGTL~RlpkvVG 183 (292)
T KOG1681|consen 106 RSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQD-AFFSVKEVDVGL-AADVGTLNRLPKVVG 183 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeeccc-ceeeeeeeeeeh-hhchhhHhhhhHHhc
Confidence 346788889999999999999999999999999999999999999999999 899999999999 788884 89999999
Q ss_pred CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhccchhhh
Q 041046 159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLGLDIRAV 237 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~~~~~~~ 237 (243)
+.+.++++.+|++.|+|.||++.|||++|+|+.+++.+.+..+|+.|+.++ |.+...+|..|...-.+..++...++
T Consensus 184 n~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KS--pvaVqgTK~~L~ysrehsv~~sLnyv 260 (292)
T KOG1681|consen 184 NQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKS--PVAVQGTKENLLYSREHSVEESLNYV 260 (292)
T ss_pred chHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCC--ceeeechHHHHHHHhhhhhhhhHHHH
Confidence 999999999999999999999999999999999999999999999999999 99999999999888887777554444
No 72
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=4.7e-44 Score=317.11 Aligned_cols=212 Identities=16% Similarity=0.146 Sum_probs=184.9
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||+|+ +.|++|.+|+.+|.++++.++.|++++ +||++|.|+.||+|.|++++..... ......
T Consensus 39 V~~e~~g~v~~ItLNRP~--~lNALs~~m~~~L~~al~~~~~D~~vr-vVVl~G~GkaFcAGgDl~~l~~~~~-~~~~~~ 114 (401)
T PLN02157 39 VLVEGSGCSRTAILNRPP--ALNALTTHMGYRLQKLYKNWEEDPNIG-FVMMKGSGRAFCAGGDIVSLYHLRK-RGSPDA 114 (401)
T ss_pred eEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHhhCCCCe-EEEEECCCCCccCCcCHHHHHhhcc-ccchHH
Confidence 567889999999999997 889999999999999999999999999 9999999999999999998764211 111122
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...++...+++...|.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus 115 ~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~-a~fa~PE~~iGl-~Pd~G~s~~L~rl~G-~ 191 (401)
T PLN02157 115 IREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDR-TIFATPETIIGF-HPDAGASFNLSHLPG-R 191 (401)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCC-CEEEChhhhcCC-CCCccHHHHHHHhhh-H
Confidence 2344444455778899999999999999999999999999999999988 899999999999 78876 678999998 5
Q ss_pred HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
.+++|++||+.++|+||+++||+++++|+ +++ +++.+++.+++..+ +.++..+|+.++..
T Consensus 192 -~a~~L~LTG~~i~A~eA~~~GLv~~vVp~-~~l-~~~~~~~~~i~~~~--p~av~~~k~~~~~~ 251 (401)
T PLN02157 192 -LGEYLGLTGLKLSGAEMLACGLATHYIRS-EEI-PVMEEQLKKLLTDD--PSVVESCLEKCAEV 251 (401)
T ss_pred -HHHHHHHcCCcCCHHHHHHcCCceEEeCH-hHH-HHHHHHHHHHHcCC--HHHHHHHHHHHhcc
Confidence 68999999999999999999999999998 777 67779999999887 88899999887643
No 73
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.6e-43 Score=313.63 Aligned_cols=211 Identities=18% Similarity=0.191 Sum_probs=181.9
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||+|+ +.|++|.+|+.+|.++++.++.|++|+ +||++|.|++||+|.|++++..... .. ..
T Consensus 13 v~~~~~~~v~~ItLnrP~--~~Nal~~~m~~eL~~al~~~~~d~~vr-vvVl~g~g~~FcaG~Dl~~~~~~~~-~~--~~ 86 (379)
T PLN02874 13 VLGEEKGRVRVITLNRPR--QLNVISLSVVSLLAEFLEQWEKDDSVE-LIIIKGAGRAFSAGGDLKMFYDGRE-SD--DS 86 (379)
T ss_pred eEEEEECCEEEEEECCCc--cccCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCCccCccCHHHHHhhcc-cc--hH
Confidence 567889999999999997 789999999999999999999999999 9999999999999999998754211 11 11
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+......++.++.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++.+| .
T Consensus 87 ~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~iGl-~p~~g~~~~L~rl~g-~ 163 (379)
T PLN02874 87 CLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEK-TVFATPEASVGF-HTDCGFSYILSRLPG-H 163 (379)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCC-eEEeccccccCc-CCChhHHHHHHhhhH-H
Confidence 2223334456678899999999999999999999999999999999988 899999999999 67776 678888877 5
Q ss_pred HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHH---H----------------------------------------
Q 041046 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAE---A---------------------------------------- 197 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~---~---------------------------------------- 197 (243)
.+++|++||++++|++|+++||||++|++ +++.+ +
T Consensus 164 -~a~~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 241 (379)
T PLN02874 164 -LGEYLALTGARLNGKEMVACGLATHFVPS-EKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINEC 241 (379)
T ss_pred -HHHHHHHcCCcccHHHHHHcCCccEEeCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHH
Confidence 78899999999999999999999999997 67755 2
Q ss_pred ------------------------HHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046 198 ------------------------SMRLAKQMAGRKWAGEVYAEIRKSLYPD 225 (243)
Q Consensus 198 ------------------------a~~~a~~la~~~~~~~~~~~~K~~l~~~ 225 (243)
|.++++.|++.| |.+++.+|++++..
T Consensus 242 f~~~~~~eii~al~~~~~~~~~~~A~~~a~~l~~~s--P~al~~tk~~~~~~ 291 (379)
T PLN02874 242 FSKDTVEEIIKAFESEASKTGNEWIKETLKGLRRSS--PTGLKITLRSIREG 291 (379)
T ss_pred hCCCCHHHHHHHHhhcccccccHHHHHHHHHHHhcC--hHHHHHHHHHHHHh
Confidence 347899999998 99999999988764
No 74
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=1.5e-42 Score=299.74 Aligned_cols=208 Identities=15% Similarity=0.191 Sum_probs=182.2
Q ss_pred CCEE--EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHHHHHH
Q 041046 8 GDVF--VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARERLLY 84 (243)
Q Consensus 8 ~~v~--~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~~~~~ 84 (243)
+|++ +|+||+|+ +.|++|.+|+.+|.++++.++.|++++ +||+||.| ++||+|.|++++..... .. .....+
T Consensus 34 ~~~~~A~ItLNRP~--k~NAls~~ml~eL~~al~~~~~D~dVr-vVVLTG~G~kaFCAG~DLke~~~~~~-~~-~~~~~~ 108 (360)
T TIGR03200 34 PGLYNAWIILDNPK--QYNSYTTDMVKAIILAFRRASSDRDVV-AVVFTAVGDKAFCTGGNTKEYAEYYA-GN-PQEYRQ 108 (360)
T ss_pred CceEEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEEcCCCCcccCCcCHHHHhhhcc-cC-hhHHHH
Confidence 4544 49999997 789999999999999999999999999 99999999 69999999998765311 11 223345
Q ss_pred HHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCHHHH
Q 041046 85 MVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSATAR 163 (243)
Q Consensus 85 ~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~a 163 (243)
+...+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.+|++++| ..++
T Consensus 109 ~~~~~~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~-A~Fg~PE~rlGl-~P~~Ggt~rLprlvG-~~rA 185 (360)
T TIGR03200 109 YMRLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDL-ANFGQAGPKHGS-APIGGATDFLPLMIG-CEQA 185 (360)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCC-CEEeCchhccCC-CCCccHHHHHHHhhC-HHHH
Confidence 5666778899999999999999999999999999999999999988 899999999999 67776 679999999 9999
Q ss_pred HHHHhccCCCCHHHHHHcCchhhhcCChHHH------------HHHHHHHHHHHhcCCCChhHHHHHHHHhhh
Q 041046 164 RDVLLRAKKIKGEEALRMGLVQAAYDSEEQV------------AEASMRLAKQMAGRKWAGEVYAEIRKSLYP 224 (243)
Q Consensus 164 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l------------~~~a~~~a~~la~~~~~~~~~~~~K~~l~~ 224 (243)
++++++|++++|+||+++||||+|+|+ +++ ++++.++++.+...+....+....|.++..
T Consensus 186 ~~llltGe~~sA~EA~~~GLVd~VVp~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 257 (360)
T TIGR03200 186 MVSGTLCEPWSAHKAKRLGIIMDVVPA-LKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQ 257 (360)
T ss_pred HHHHHhCCcCcHHHHHHcCChheecCc-hhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhc
Confidence 999999999999999999999999998 788 888889999999988444488888887776
No 75
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=2.8e-42 Score=304.76 Aligned_cols=210 Identities=18% Similarity=0.214 Sum_probs=178.2
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|++++ +||++|.|++||+|.|++++..... ......
T Consensus 11 v~~~~~~~i~~ItLnRP~--~lNALs~~m~~~L~~al~~~~~d~~v~-~VVl~G~G~~FcAGgDl~~l~~~~~-~~~~~~ 86 (381)
T PLN02988 11 VLVEEKSSVRILTLNRPK--QLNALSFHMISRLLQLFLAFEEDPSVK-LVILKGHGRAFCAGGDVAAVVRDIE-QGNWRL 86 (381)
T ss_pred eEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCee-EEEEECCCCCcccCcCHHHHHhhhc-ccchhH
Confidence 567889999999999997 789999999999999999999999999 9999999999999999998753211 111111
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...++.....+...+.++|||+||++||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus 87 ~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~-a~f~mPE~~iGl-~Pd~G~s~~L~rl~G-~ 163 (381)
T PLN02988 87 GANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATEN-TVFAMPETALGL-FPDVGASYFLSRLPG-F 163 (381)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCC-cEEeChhhhcCc-CCCccHHHHHHHHHH-H
Confidence 1222333344567888999999999999999999999999999999987 899999999999 78876 678999888 5
Q ss_pred HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhh
Q 041046 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLY 223 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~ 223 (243)
.++++++||++++|++|+++||+|+++++ +++.+.+.+++ +++..+ +.++..+|+.+.
T Consensus 164 -~~~~l~LTG~~i~a~eA~~~GLv~~vv~~-~~l~~~~~~la-~~~~~~--p~~~~~~~~~~~ 221 (381)
T PLN02988 164 -FGEYVGLTGARLDGAEMLACGLATHFVPS-TRLTALEADLC-RIGSND--PTFASTILDAYT 221 (381)
T ss_pred -HHHHHHHcCCCCCHHHHHHcCCceEecCH-hHHHHHHHHHH-HhhccC--HHHHHHHHHHhh
Confidence 57899999999999999999999999998 88999888888 676665 666777777665
No 76
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=3.9e-42 Score=314.74 Aligned_cols=215 Identities=16% Similarity=0.142 Sum_probs=185.7
Q ss_pred ceeeEeCCEEEEEEcCCCCCCC-------------CCCCHHHHHHHHHHHHHHHh-CCCCCeEEEEecCCCc-cccCCCh
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDE-------------HRFGPSAIDSILSAIAKAKA-EATPGSALITTSHGKF-FSNGLDL 66 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~-------------N~~~~~~~~~l~~~l~~~~~-d~~i~~vvvl~g~g~~-F~~G~dl 66 (243)
+.++++++|++||||+|+ +. |+++.+++.+|.+++.+++. |++++ +||+||.|+. ||+|.|+
T Consensus 260 v~~~~~~~va~itlnrP~--~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr-~vVl~g~G~~~F~aG~Dl 336 (546)
T TIGR03222 260 VAIDRAARTATITLKGPK--AAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIG-LWVFRTQGDAELVLAADA 336 (546)
T ss_pred EEEeccCCEEEEEecChh--hcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeE-EEEEEcCCCCceecCcCc
Confidence 345678999999999997 78 99999999999999999994 59999 9999999987 9999999
Q ss_pred hhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEE-CcccchhH-HHHHHhccEEEE-------ecCCcceeec
Q 041046 67 AWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAV-NGHAAAAG-FTLALSHDYVIM-------RRDKGVLYMS 137 (243)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v-~G~a~G~G-~~la~~~D~~ia-------~~~~~~f~~p 137 (243)
+.... .+ ...........++++.+|.++|||+||+| ||+|+||| ++|+++||+||+ +++ ++|++|
T Consensus 337 ~~~~~----~~-~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~-a~f~~~ 410 (546)
T TIGR03222 337 LLEAH----KD-HWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPE-PAITLS 410 (546)
T ss_pred ccccc----cc-chhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCC-CEEeCC
Confidence 84221 11 11112223344668889999999999999 89999999 999999999999 787 899999
Q ss_pred ccccCCCCchhh-HHHHHHHh-CCHHHH--HHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChh
Q 041046 138 EVDIGATLPDYF-TALFRAKV-GSATAR--RDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGE 213 (243)
Q Consensus 138 e~~~Gl~~p~~g-~~~l~~~~-g~~~~a--~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~ 213 (243)
|+++|+ +|++| +++|++++ | ..++ ++++++|+.++|+||+++|||++|+++ +++.+++.++++++++.| |.
T Consensus 411 e~~lGl-~p~~gg~~~L~~~v~G-~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~ 485 (546)
T TIGR03222 411 ELNFGL-YPMVNGLSRLATRFYA-EPAPVAAVRDKIGQALDAEEAERLGLVTAAPDD-IDWEDEIRIALEERASFS--PD 485 (546)
T ss_pred cccccc-CCCcCcHHHHHHHhcC-chhHHHHHHHHhCCCCCHHHHHHcCCcccccCc-hHHHHHHHHHHHHHHhcC--HH
Confidence 999999 78876 68999998 9 8888 559999999999999999999999998 889999999999999999 99
Q ss_pred HHHHHHHHhhhHHHHHh
Q 041046 214 VYAEIRKSLYPDLCGVL 230 (243)
Q Consensus 214 ~~~~~K~~l~~~~~~~~ 230 (243)
+++.+|+.++......+
T Consensus 486 a~~~~K~~l~~~~~~~~ 502 (546)
T TIGR03222 486 ALTGLEANLRFAGPETM 502 (546)
T ss_pred HHHHHHHHHhhcCCcCh
Confidence 99999999886644433
No 77
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=4.6e-42 Score=315.15 Aligned_cols=215 Identities=13% Similarity=0.106 Sum_probs=184.7
Q ss_pred eeeEeCCEEEEEEcCCCCCCC-------------CCCCHHHHHHHHHHHHHHHh-CCCCCeEEEEecCC-CccccCCChh
Q 041046 3 TLEKHGDVFVLTLTGSSDVDE-------------HRFGPSAIDSILSAIAKAKA-EATPGSALITTSHG-KFFSNGLDLA 67 (243)
Q Consensus 3 ~~~~~~~v~~i~ln~p~~~~~-------------N~~~~~~~~~l~~~l~~~~~-d~~i~~vvvl~g~g-~~F~~G~dl~ 67 (243)
.++++++|++||+|+|+ +. |++|.+|+.+|.+++++++. |++++ +||+||.| +.||+|.|++
T Consensus 265 ~~~~~~~va~itlnrP~--~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr-~vVltg~G~~~F~aG~Dl~ 341 (550)
T PRK08184 265 EIDRAARTATITVKAPT--AAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIG-TWVLKTEGDAAAVLAADAT 341 (550)
T ss_pred EEEccCCEEEEEEeCcc--cccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeE-EEEEEcCCCCcEEeCCChh
Confidence 45567899999999997 77 68999999999999999996 79999 99999999 4999999987
Q ss_pred hHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEEC-cccchhH-HHHHHhccEEEEe-------cCCcceeecc
Q 041046 68 WAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVN-GHAAAAG-FTLALSHDYVIMR-------RDKGVLYMSE 138 (243)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~-G~a~G~G-~~la~~~D~~ia~-------~~~~~f~~pe 138 (243)
.... . . ..........+..++.++.++||||||+|| |+|+||| ++|+++||+||++ ++ ++|++||
T Consensus 342 ~~~~--~--~-~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~-a~f~~pe 415 (550)
T PRK08184 342 LLAH--K--D-HWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPA-PAITLSA 415 (550)
T ss_pred hhcc--c--c-hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCC-CEEECcc
Confidence 3221 1 1 111122234456688899999999999997 9999999 9999999999999 76 8999999
Q ss_pred cccCCCCchhh-HHHHHHH-hCCHHHHHHH--HhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhH
Q 041046 139 VDIGATLPDYF-TALFRAK-VGSATARRDV--LLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEV 214 (243)
Q Consensus 139 ~~~Gl~~p~~g-~~~l~~~-~g~~~~a~~l--~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~ 214 (243)
+++|+ +|++| +++|+++ +| ..+++++ +++|++++|+||+++||||+++|+ +++.+++.++|++++..| |.+
T Consensus 416 ~~~Gl-~p~~gg~~~L~r~~vG-~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~ia~~~--p~a 490 (550)
T PRK08184 416 LNFGL-YPMVNGLSRLARRFYG-EPDPLAAVRAKIGQPLDADAAEELGLVTAAPDD-IDWEDEVRIALEERASLS--PDA 490 (550)
T ss_pred ccccC-CCCCCcHHHhHHHhcC-hHHHHHHHHHHhCCcCCHHHHHHcCCcccccCh-HHHHHHHHHHHHHHHhCC--HHH
Confidence 99999 78875 7899998 69 9988887 589999999999999999999998 899999999999999999 999
Q ss_pred HHHHHHHhhhHHHHHhc
Q 041046 215 YAEIRKSLYPDLCGVLG 231 (243)
Q Consensus 215 ~~~~K~~l~~~~~~~~~ 231 (243)
++.+|+.++....+.++
T Consensus 491 ~~~~K~~l~~~~~~~~~ 507 (550)
T PRK08184 491 LTGMEANLRFAGPETME 507 (550)
T ss_pred HHHHHHHHHhcCCCCHH
Confidence 99999999876544333
No 78
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=3.1e-41 Score=320.37 Aligned_cols=198 Identities=24% Similarity=0.352 Sum_probs=176.8
Q ss_pred ceee-EeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046 2 CTLE-KHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 2 i~~~-~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
+.++ ++++|++|+||+|+ +.|++|.+++++|.++++.++.|++++ +||++|.|++||+|+|++++..... .+..
T Consensus 8 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~~--~~~~ 82 (715)
T PRK11730 8 LQVDWLEDGIAELVFDAPG--SVNKLDRATLASLGEALDALEAQSDLK-GLLLTSAKDAFIVGADITEFLSLFA--APEE 82 (715)
T ss_pred EEEEEcCCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCcE-EEEEECCCCccccCcCHHHHhhhcc--CCHH
Confidence 4556 37899999999997 889999999999999999999999999 9999999999999999998754211 1122
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+...+++++.++.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 83 ~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~-a~f~~pe~~lGl-~p~~g~~~~L~rlvG- 159 (715)
T PRK11730 83 ELSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPD-ARIGLPETKLGI-MPGFGGTVRLPRLIG- 159 (715)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCC-CEEeCchhhcCC-CCCchHHHHHHHhcC-
Confidence 23445556778899999999999999999999999999999999999988 899999999999 77776 689999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcC
Q 041046 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~ 208 (243)
...+++++++|++++|+||+++||||+++++ +++.+++.++|++++..
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~ 207 (715)
T PRK11730 160 ADNALEWIAAGKDVRAEDALKVGAVDAVVAP-EKLQEAALALLKQAIAG 207 (715)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCH-HHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999998 88999999999999965
No 79
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=5.8e-41 Score=272.72 Aligned_cols=195 Identities=29% Similarity=0.448 Sum_probs=177.0
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||+|+ +.|++|.+++++|.++++.++.|++++ +||++|.|+.||+|.|++++..... +...
T Consensus 1 i~~~~~~~i~~i~l~~~~--~~N~~~~~~~~~l~~~l~~~~~d~~~~-~vvl~~~~~~Fs~G~dl~~~~~~~~---~~~~ 74 (195)
T cd06558 1 VLVERDGGVATITLNRPE--KRNALSLEMLDELAAALDEAEADPDVR-VVVLTGAGKAFCAGADLKELAALSD---AGEE 74 (195)
T ss_pred CEEEEECCEEEEEECCcc--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCceEeCcCHHHHhcccc---cchh
Confidence 568899999999999996 699999999999999999999999999 9999999999999999999876422 1113
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~ 161 (243)
..++...+++++.++.++|||+|+++||+|.|+|++++++||+||++++ ++|++||.++|+.+|.+++.++.+++| .+
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~-~~~~~pe~~~G~~p~~g~~~~l~~~~g-~~ 152 (195)
T cd06558 75 ARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAED-AKFGLPEVKLGLVPGGGGTQRLPRLVG-PA 152 (195)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCC-CEEechhhhcCCCCCCcHHHHHHHHhC-HH
Confidence 5677888999999999999999999999999999999999999999988 899999999999434444789999999 99
Q ss_pred HHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHH
Q 041046 162 ARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l 205 (243)
.+.+++++|++++++||+++||+|+++++ +++.+++.++++++
T Consensus 153 ~a~~~~l~g~~~~a~ea~~~Glv~~~~~~-~~l~~~a~~~a~~~ 195 (195)
T cd06558 153 RARELLLTGRRISAEEALELGLVDEVVPD-EELLAAALELARRL 195 (195)
T ss_pred HHHHHHHcCCccCHHHHHHcCCCCeecCh-hHHHHHHHHHHhhC
Confidence 99999999999999999999999999998 88999999998763
No 80
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=2e-40 Score=293.86 Aligned_cols=197 Identities=15% Similarity=0.167 Sum_probs=171.3
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
|.++..+++++|+||+|+ +.|++|.+|+.+|.++++.++.|++++ +||++|.|++||+|.|++++..... ..+...
T Consensus 44 v~~e~~~~~~~ItLNRP~--~lNALs~~m~~eL~~al~~~~~D~~vr-vVVL~G~GkaFcAGgDl~~l~~~~~-~~~~~~ 119 (407)
T PLN02851 44 VLVEGRAKSRAAILNRPS--SLNALTIPMVARLKRLYESWEENPDIG-FVLMKGSGRAFCSGADVVSLYHLIN-EGNVEE 119 (407)
T ss_pred eEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCccCCcCHHHHHhhcc-ccchHH
Confidence 567889999999999997 899999999999999999999999999 9999999999999999998865322 111233
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...++...+++...+.++|||+||++||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++..| .
T Consensus 120 ~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~-a~famPE~~iGl-~PdvG~s~~L~rl~g-~ 196 (407)
T PLN02851 120 CKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDK-TVFAHPEVQMGF-HPDAGASYYLSRLPG-Y 196 (407)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCC-ceEecchhccCC-CCCccHHHHHHHhcC-H
Confidence 4556666778888999999999999999999999999999999999988 899999999999 78887 578888888 5
Q ss_pred HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcC
Q 041046 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~ 208 (243)
.++++++||++++|++|+++||+++++++ +++ +.+.+.+.++...
T Consensus 197 -~g~~L~LTG~~i~a~eA~~~GLa~~~v~~-~~l-~~l~~~l~~~~~~ 241 (407)
T PLN02851 197 -LGEYLALTGQKLNGVEMIACGLATHYCLN-ARL-PLIEERLGKLLTD 241 (407)
T ss_pred -HHHHHHHhCCcCCHHHHHHCCCceeecCH-hhH-HHHHHHHHhhccC
Confidence 48899999999999999999999999998 666 6666666665443
No 81
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=2.3e-40 Score=314.31 Aligned_cols=192 Identities=23% Similarity=0.374 Sum_probs=169.9
Q ss_pred eeeE-eCCEEEEEEcCC-CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchH
Q 041046 3 TLEK-HGDVFVLTLTGS-SDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGAR 79 (243)
Q Consensus 3 ~~~~-~~~v~~i~ln~p-~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~ 79 (243)
.+++ +++|++|+||+| + +.|++|.+++.+|.+++++++.|++++ +||++|.+ ++||+|+|++++..... .
T Consensus 8 ~~~~~~~~va~itlnrp~~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-~vVl~~~~~~~F~aG~Dl~~~~~~~~----~ 80 (708)
T PRK11154 8 TLNVREDNIAVITIDVPGE--KMNTLKAEFAEQVRAILKQLREDKELK-GVVFISGKPDNFIAGADINMLAACKT----A 80 (708)
T ss_pred EEEEcCCCEEEEEECCCCC--CCcCCCHHHHHHHHHHHHHHHhCCCce-EEEEecCCCCCcccCcChHHhhccCC----H
Confidence 4566 689999999999 5 789999999999999999999999999 88888764 89999999998754211 1
Q ss_pred HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCC-cceeecccccCCCCchhh-HHHHHHHh
Q 041046 80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDK-GVLYMSEVDIGATLPDYF-TALFRAKV 157 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~-~~f~~pe~~~Gl~~p~~g-~~~l~~~~ 157 (243)
.....+...+++++.++.++||||||+|||+|+|||++|+++||+||+++++ ++|++||+++|+ +|++| +++|++++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl-~p~~gg~~~L~r~v 159 (708)
T PRK11154 81 QEAEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGL-LPGSGGTQRLPRLI 159 (708)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCC-CCCccHHhHHHhhc
Confidence 2223344556778899999999999999999999999999999999999873 589999999999 67776 78999999
Q ss_pred CCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHH
Q 041046 158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQ 204 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~ 204 (243)
| ..+|++|+++|++++|+||+++||||+++++ +++.+++.++|++
T Consensus 160 G-~~~A~~llltG~~i~a~eA~~~GLv~~vv~~-~~l~~~a~~~A~~ 204 (708)
T PRK11154 160 G-VSTALDMILTGKQLRAKQALKLGLVDDVVPH-SILLEVAVELAKK 204 (708)
T ss_pred C-HHHHHHHHHhCCcCCHHHHHHCCCCcEecCh-HHHHHHHHHHHHh
Confidence 9 9999999999999999999999999999998 8899999999988
No 82
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=2.1e-40 Score=314.06 Aligned_cols=190 Identities=22% Similarity=0.358 Sum_probs=168.4
Q ss_pred eeEeCCEEEEEEcCC-CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEE-EecCCCccccCCChhhHHhcccccchHHH
Q 041046 4 LEKHGDVFVLTLTGS-SDVDEHRFGPSAIDSILSAIAKAKAEATPGSALI-TTSHGKFFSNGLDLAWAQAAGSRAGARER 81 (243)
Q Consensus 4 ~~~~~~v~~i~ln~p-~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvv-l~g~g~~F~~G~dl~~~~~~~~~~~~~~~ 81 (243)
.+.+++|++|+||+| + +.|++|.+++.+|.+++++++.|++++ +|| ++|.|++||+|+|++++..... ...
T Consensus 5 ~~~~~~Va~itlnrp~~--~~Nal~~~~~~eL~~~l~~~~~d~~vr-~VVl~~g~g~~FcaG~Dl~~~~~~~~----~~~ 77 (699)
T TIGR02440 5 TVREDGIAILTIDVPGE--KMNTLKAEFADQVSEILSQLKRDKSIR-GLVLVSGKPDNFIAGADISMLAACQT----AGE 77 (699)
T ss_pred EEcCCCEEEEEECCCCC--CCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEeCCCCceeeccCchhhhccCC----hhH
Confidence 345689999999999 6 789999999999999999999999999 555 5788999999999998754211 222
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecC-CcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRD-KGVLYMSEVDIGATLPDYF-TALFRAKVGS 159 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~-~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
...+...++.++.++.++||||||+|||+|+|||++|+++||+||++++ .++|++||+++|+ +|++| ++++++++|
T Consensus 78 ~~~~~~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl-~p~~g~~~~L~r~vG- 155 (699)
T TIGR02440 78 AKALAQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGL-LPGSGGTQRLPRLIG- 155 (699)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccC-CCCccHHHHHHHhcC-
Confidence 3344556678889999999999999999999999999999999999976 3699999999999 77776 689999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHH
Q 041046 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAK 203 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~ 203 (243)
..++++++++|++++|++|+++||||+++++ +++.+++.++|+
T Consensus 156 ~~~A~~llltG~~~~a~eA~~~GLV~~vv~~-~~l~~~a~~~A~ 198 (699)
T TIGR02440 156 VSTALDMILTGKQLRAKQALKLGLVDDVVPQ-SILLDTAVEMAL 198 (699)
T ss_pred HHHHHHHHHcCCcCCHHHHHhCCCCcEecCh-hHHHHHHHHHHH
Confidence 9999999999999999999999999999998 889999999998
No 83
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-40 Score=270.14 Aligned_cols=220 Identities=21% Similarity=0.307 Sum_probs=196.5
Q ss_pred ceeeEeCCEEEEEEc-CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046 2 CTLEKHGDVFVLTLT-GSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 2 i~~~~~~~v~~i~ln-~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
+.+++++++.+|.+| +|+ +.|+++.+++.++..+++.+..|+++. +++++|.|++||+|.|+..+....+ .+...
T Consensus 9 ~vv~~~~g~~~I~~~~~Pk--k~Nal~~e~y~~i~~al~~a~~dds~~-~tv~s~~G~~f~sG~Df~~~~~~~~-~d~~~ 84 (266)
T KOG0016|consen 9 IVVTRENGPFFIALNIRPK--KKNALNREDYVYIQRALEEANDDDSVS-ITVLSSNGSYFCSGLDFSPFAKALD-DDANE 84 (266)
T ss_pred eEEEecCCcEEEEecCCCc--ccccccHHHHHHHHHHHHHhhcccceE-EEEEecCccEEeeccccchhhhcCC-Ccccc
Confidence 567899999999999 998 899999999999999999999999987 9999999999999999998876433 12122
Q ss_pred HH---HHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHH
Q 041046 81 RL---LYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAK 156 (243)
Q Consensus 81 ~~---~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~ 156 (243)
.. .+....+..++..+..+|||+||.|||+|+|.|..+...||++||+|+ ++|..|+..+|. .|.++ ++.+|++
T Consensus 85 ~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dk-a~F~TPfa~lGq-~PEG~Ss~t~p~i 162 (266)
T KOG0016|consen 85 ESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDK-AWFQTPFAKLGQ-SPEGCSSVTLPKI 162 (266)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccc-eEEeccchhcCC-CCCcceeeeehHh
Confidence 22 222233344889999999999999999999999999999999999966 999999999999 79888 5799999
Q ss_pred hCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046 157 VGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG 231 (243)
Q Consensus 157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~ 231 (243)
+| ...|.+|++.|++++|+||++.|||+++++. +++.+.++..++++++.+ |.++...|++++....+.+.
T Consensus 163 mG-~~~A~E~ll~~~kltA~Ea~~~glVskif~~-~tf~~~v~~~ikq~s~l~--p~sl~~~K~L~rs~~k~~l~ 233 (266)
T KOG0016|consen 163 MG-SASANEMLLFGEKLTAQEACEKGLVSKIFPA-ETFNEEVLKKIKQYSKLS--PESLLGMKKLLRSNIKEELI 233 (266)
T ss_pred hc-hhhHHHHHHhCCcccHHHHHhcCchhhhcCh-HHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHH
Confidence 99 9999999999999999999999999999999 899999999999999988 99999999999988777665
No 84
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=7.6e-40 Score=311.01 Aligned_cols=199 Identities=23% Similarity=0.346 Sum_probs=174.1
Q ss_pred ceeeEeCCEEEEEEcCCCCCC-CCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVD-EHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~-~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+||+|. + .|++|.+++.+|.+++++++.|++++++||++|.|++||+|+|++++..... ..
T Consensus 15 ~~~~~~~gVa~itlnrP~--~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~----~~ 88 (737)
T TIGR02441 15 RHYEVKGDVAVVKIDSPN--SKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKT----AQ 88 (737)
T ss_pred EEEEEECCEEEEEEcCCC--CCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCC----hH
Confidence 567889999999999993 3 6999999999999999999999999955678999999999999999864211 23
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCC-cceeecccccCCCCchhh-HHHHHHHhC
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDK-GVLYMSEVDIGATLPDYF-TALFRAKVG 158 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~-~~f~~pe~~~Gl~~p~~g-~~~l~~~~g 158 (243)
....+...+++++.++.++||||||+|||+|+|||++|+++||+||+++++ ++|++||+++|+ +|++| +++|++++|
T Consensus 89 ~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl-~Pg~Ggt~rLprliG 167 (737)
T TIGR02441 89 EVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGL-LPGAGGTQRLPKLTG 167 (737)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCC-CCCccHhhhHHHhhC
Confidence 344555667889999999999999999999999999999999999999874 589999999999 78876 689999999
Q ss_pred CHHHHHHHHhccCCCCHHHHHHcCchhhhcCCh------------HHHHHHHHHHHHHHhcC
Q 041046 159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSE------------EQVAEASMRLAKQMAGR 208 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~------------~~l~~~a~~~a~~la~~ 208 (243)
...|++++++|++++|++|+++||||+|+++. +++.+.|.+++++++..
T Consensus 168 -~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~ 228 (737)
T TIGR02441 168 -VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANG 228 (737)
T ss_pred -HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999861 55788888888877653
No 85
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=9.7e-40 Score=309.63 Aligned_cols=197 Identities=22% Similarity=0.335 Sum_probs=174.9
Q ss_pred ceeeE-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 2 i~~~~-~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
+.++. +++|++|+||+|+ +.|++|.+++.+|.+++++++.|++++ +||++|.|++||+|+|++++..... .. ..
T Consensus 8 i~~~~~~~gva~Itlnrp~--~~Nal~~~~~~eL~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~-~~ 82 (714)
T TIGR02437 8 IQVTALEDGIAELKFDAPG--SVNKFDRATLASLDQALDAIKAQSSLK-GVILTSGKDAFIVGADITEFLGLFA-LP-DA 82 (714)
T ss_pred EEEEEccCCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCccccCcCHHHHhhccc-CC-HH
Confidence 45554 6889999999997 899999999999999999999999999 9999999999999999998864211 11 22
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+....++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 83 ~~~~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~-a~fglPEv~lGl-~Pg~Ggt~rL~rliG- 159 (714)
T TIGR02437 83 ELIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDT-AKIGLPETKLGI-MPGFGGTVRLPRVIG- 159 (714)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCC-CEEecchhhcCC-CCCccHHHHHHHHhC-
Confidence 23344555678899999999999999999999999999999999999987 899999999999 78876 689999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhc
Q 041046 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAG 207 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~ 207 (243)
...|++++++|++++|++|+++||||++++. +++.+++.++++++..
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLvd~vv~~-~~l~~~a~~~a~~~~~ 206 (714)
T TIGR02437 160 ADNALEWIASGKENRAEDALKVGAVDAVVTA-DKLGAAALQLLKDAIN 206 (714)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCcEeeCh-hHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998 8899999999988554
No 86
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=5e-39 Score=294.29 Aligned_cols=218 Identities=18% Similarity=0.217 Sum_probs=176.7
Q ss_pred ceeeEeCCEEEEEEcCCC-----C---CCCCCCCHHHHHHHHHHHHHHH-hCCCCCeEEEEecC-CCccccCCChhhHHh
Q 041046 2 CTLEKHGDVFVLTLTGSS-----D---VDEHRFGPSAIDSILSAIAKAK-AEATPGSALITTSH-GKFFSNGLDLAWAQA 71 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~-----~---~~~N~~~~~~~~~l~~~l~~~~-~d~~i~~vvvl~g~-g~~F~~G~dl~~~~~ 71 (243)
+.++++++|++|+||+|+ . ++.|++|.+++.+|.+++++++ .|++++ +||+||. |++||+|.|++++..
T Consensus 13 v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vR-vVVLtg~~Gk~FcaG~DL~~~~~ 91 (546)
T TIGR03222 13 WKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVR-TVVMTSGKDRVFCSGANIFMLGL 91 (546)
T ss_pred EEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCee-EEEEecCCCCCCcCCcCHHHHhc
Confidence 577889999999999972 0 1679999999999999999999 789999 9999987 589999999998753
Q ss_pred cccccchHHHHHHH-HHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecC-Ccceeecccc-cCCCCchh
Q 041046 72 AGSRAGARERLLYM-VESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRD-KGVLYMSEVD-IGATLPDY 148 (243)
Q Consensus 72 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~-~~~f~~pe~~-~Gl~~p~~ 148 (243)
... .. ......+ ......+...+.++|||+||+|||+|+|+|++|+++||+||++++ .++|++||++ +|+ +|++
T Consensus 92 ~~~-~~-~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl-~P~~ 168 (546)
T TIGR03222 92 STH-AW-KVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGV-LPGT 168 (546)
T ss_pred ccc-ch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCc-CCcc
Confidence 211 00 1111111 112234556778899999999999999999999999999999986 3799999997 999 6777
Q ss_pred h-HHHHH--HHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCCh-----hHHHHHHH
Q 041046 149 F-TALFR--AKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAG-----EVYAEIRK 220 (243)
Q Consensus 149 g-~~~l~--~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~-----~~~~~~K~ 220 (243)
| ..++. +++| ..+|++|+++|++++|+||+++||||+|+++ +++.+++.++|++++..|+.| ..+..+++
T Consensus 169 gg~~~l~~~~~vg-~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~lA~~la~~~p~~~~~~~~~~~~~~~ 246 (546)
T TIGR03222 169 GGLTRVTDKRRVR-RDHADIFCTIEEGVRGKRAKEWRLVDEVVKP-SQFDAAIAERAAELAAQSDRPADAKGVQLTPLER 246 (546)
T ss_pred chhhhccccchhC-HHHHHHHHHcCCCccHHHHHHcCCceEEeCh-HHHHHHHHHHHHHHHhCCCCCcCCCceeeeehhh
Confidence 6 56776 6899 9999999999999999999999999999998 889999999999999988544 33344445
Q ss_pred HhhhH
Q 041046 221 SLYPD 225 (243)
Q Consensus 221 ~l~~~ 225 (243)
.++.+
T Consensus 247 ~~~~~ 251 (546)
T TIGR03222 247 TIDED 251 (546)
T ss_pred hcccC
Confidence 44443
No 87
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=8.3e-40 Score=258.91 Aligned_cols=209 Identities=18% Similarity=0.307 Sum_probs=190.3
Q ss_pred eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC-CCccccCCChhhHHhcccccchHHHHHHH
Q 041046 7 HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH-GKFFSNGLDLAWAQAAGSRAGARERLLYM 85 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~-g~~F~~G~dl~~~~~~~~~~~~~~~~~~~ 85 (243)
+.||..|-+|+|. +.|+++.-++++|.++++.+..|+.++ ||++++. ++.||+|+||++-.. +.+.+...|
T Consensus 38 ~~GItvl~mNRpa--~kNsl~r~~~~~l~~~l~~lk~D~~~R-vvilrS~vpgvFCaGADLKER~~-----Ms~~Ev~~f 109 (291)
T KOG1679|consen 38 DEGITILNMNRPA--KKNSLGRVFVKQLREVLDELKYDNKVR-VVILRSLVPGVFCAGADLKERKT-----MSPSEVTRF 109 (291)
T ss_pred CCCeEEEecCChh--hhccHHHHHHHHHHHHHHHHhhCCcee-EEEEecCCCceeecCcchHhhhc-----CCHHHHHHH
Confidence 4689999999998 899999999999999999999999999 8888775 699999999999764 347888999
Q ss_pred HHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCHHHHH
Q 041046 86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSATARR 164 (243)
Q Consensus 86 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~a~ 164 (243)
.+.+..++..+.++|.||||+|.|.++|||++++++||+|+++++ +.|+++|.++++ +|+.| +++|+|.+| .+.++
T Consensus 110 V~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~-akmGLvET~lai-iPGaGGtQRLpR~vg-~alaK 186 (291)
T KOG1679|consen 110 VNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASS-AKMGLVETKLAI-IPGAGGTQRLPRIVG-VALAK 186 (291)
T ss_pred HHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhh-ccccccccceee-ecCCCccchhHHHHh-HHHHH
Confidence 999999999999999999999999999999999999999999988 899999999999 78876 799999999 99999
Q ss_pred HHHhccCCCCHHHHHHcCchhhhcCCh---HHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHH
Q 041046 165 DVLLRAKKIKGEEALRMGLVQAAYDSE---EQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCG 228 (243)
Q Consensus 165 ~l~l~g~~~~a~eA~~~Glv~~v~~~~---~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~ 228 (243)
++++|++.+++.||...||||.+|... |...+.++++|+++-.+. |.+++..|..++....-
T Consensus 187 ELIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~g--Piavr~aKlAIn~G~ev 251 (291)
T KOG1679|consen 187 ELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQG--PIAVRLAKLAINLGMEV 251 (291)
T ss_pred hHhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCC--chhhhHHHHHhccCcee
Confidence 999999999999999999999999753 356777889999997766 99999999988776443
No 88
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-39 Score=258.63 Aligned_cols=215 Identities=20% Similarity=0.354 Sum_probs=186.8
Q ss_pred ceeeEe-CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC--C-CccccCCChhhHHhcccccc
Q 041046 2 CTLEKH-GDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH--G-KFFSNGLDLAWAQAAGSRAG 77 (243)
Q Consensus 2 i~~~~~-~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~--g-~~F~~G~dl~~~~~~~~~~~ 77 (243)
|.|++. ++|+.|+||||. ..|++.+..+.|+.++|..+..|++|. |||+||. | ..||+|.|.+--.....-.+
T Consensus 20 I~Y~~~~~giakItinRPe--vrNAfrP~TV~Em~~Af~~Ar~d~~vG-vi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~ 96 (282)
T COG0447 20 ITYEKSVDGIAKITINRPE--VRNAFRPKTVDEMIDAFADARDDPNVG-VILLTGNGDGDKAFCSGGDQKVRGDSGGYVD 96 (282)
T ss_pred eEEeeccCceEEEEecChh--hhccCCCccHHHHHHHHHhhhcCCCcc-EEEEecCCCCCeeeecCCCceecccCCCccC
Confidence 678888 899999999997 899999999999999999999999998 9999985 4 89999999875433111001
Q ss_pred hHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHh
Q 041046 78 ARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKV 157 (243)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~ 157 (243)
++...++ .+.++-+.|+.+||||||.|+|+++|||-.+-+.||+.||+++ +.|++...++|-.=+++|+.+|.+.+
T Consensus 97 -d~~~~rL--nvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~n-A~FgQTgp~VGSFD~G~Gs~ylar~V 172 (282)
T COG0447 97 -DDGIPRL--NVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADN-AIFGQTGPKVGSFDGGYGSSYLARIV 172 (282)
T ss_pred -CccCccc--chhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhc-chhcCCCCCcccccCcccHHHHHHHh
Confidence 1111111 2345666778899999999999999999999999999999998 89999999999944777899999999
Q ss_pred CCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046 158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC 227 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~ 227 (243)
| .++|+++.+.++.++|+||+++|+||.|||- ++|+++..+|+++|.++| |.+++.+|..++.+..
T Consensus 173 G-qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~-~~LE~e~v~W~~E~l~kS--P~AlR~LK~Afnad~D 238 (282)
T COG0447 173 G-QKKAREIWFLCRQYDAEEALDMGLVNTVVPH-ADLEKETVQWAREMLAKS--PTALRMLKAAFNADCD 238 (282)
T ss_pred h-hhhhHHhhhhhhhccHHHHHhcCceeeeccH-HHHHHHHHHHHHHHHhcC--hHHHHHHHHHhcCCCc
Confidence 9 9999999999999999999999999999998 999999999999999999 9999999999886643
No 89
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=5.8e-38 Score=288.10 Aligned_cols=205 Identities=18% Similarity=0.228 Sum_probs=169.9
Q ss_pred ceeeEeCCEEEEEEcCCC----C----CCCCCCCHHHHHHHHHHHHHHH-hCCCCCeEEEEecCC-CccccCCChhhHHh
Q 041046 2 CTLEKHGDVFVLTLTGSS----D----VDEHRFGPSAIDSILSAIAKAK-AEATPGSALITTSHG-KFFSNGLDLAWAQA 71 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~----~----~~~N~~~~~~~~~l~~~l~~~~-~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~ 71 (243)
+.++++++|++|+||+|+ . ++.|+++.+|+.+|.+++++++ ++++++ +||++|.+ ++||+|.|++++..
T Consensus 17 ~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vr-vVVLtg~ggk~FcaG~DL~~~~~ 95 (550)
T PRK08184 17 WKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVR-TVVVTSAKDRVFCSGANIFMLGG 95 (550)
T ss_pred EEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeE-EEEEecCCCCCCCCccCHHhHhc
Confidence 567889999999999752 0 1579999999999999999999 789999 99999974 89999999998754
Q ss_pred cccccchHHHHHHHH-HhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecC-Ccceeecccc-cCCCCchh
Q 041046 72 AGSRAGARERLLYMV-ESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRD-KGVLYMSEVD-IGATLPDY 148 (243)
Q Consensus 72 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~-~~~f~~pe~~-~Gl~~p~~ 148 (243)
... .. ........ .....+...+.++||||||+|||+|+|+|++|+++|||||++++ .++|++||++ +|+ +|++
T Consensus 96 ~~~-~~-~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl-~P~~ 172 (550)
T PRK08184 96 SSH-AW-KVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGV-LPGT 172 (550)
T ss_pred ccc-ch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhcccc-CCCc
Confidence 211 00 11111111 11223455778899999999999999999999999999999976 3689999997 999 7777
Q ss_pred h-HHHHH--HHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCCh
Q 041046 149 F-TALFR--AKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAG 212 (243)
Q Consensus 149 g-~~~l~--~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~ 212 (243)
| ..+++ +++| ...+++++++|+.++|+||+++||||+++++ +++.+++.++|++++..|+.+
T Consensus 173 gg~~rl~~~~~vg-~~~A~~llltG~~i~AeeA~~~GLVd~vv~~-d~l~~~a~~~A~~ia~~~~~~ 237 (550)
T PRK08184 173 GGLTRVTDKRKVR-RDLADIFCTIEEGVRGKRAVDWRLVDEVVKP-SKFDAKVAERAAELAAASDRP 237 (550)
T ss_pred chHHHhhhhhhcC-HHHHHHHHHhCCcccHHHHHHcCCccEeeCH-HHHHHHHHHHHHHHHhCCCCC
Confidence 6 67887 6799 9999999999999999999999999999998 899999999999999997443
No 90
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=3.5e-34 Score=225.38 Aligned_cols=210 Identities=23% Similarity=0.312 Sum_probs=190.0
Q ss_pred eeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHH
Q 041046 4 LEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLL 83 (243)
Q Consensus 4 ~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~ 83 (243)
++-+++|-.|++|+|+ +.|+++.+|+.+|.+.+....++.++| +||++..|+.||+|-||+++.+... .+.-.
T Consensus 36 ~~~~~gvR~i~l~npK--k~NtLSLaM~~~Lq~~ll~d~d~~dlr-~viita~GkifSaGH~LKELt~e~g----~d~ha 108 (287)
T KOG1682|consen 36 VKEHNGVREITLNNPK--KLNTLSLAMMCALQDALLKDKDNLDLR-CVIITAQGKIFSAGHNLKELTNEPG----SDIHA 108 (287)
T ss_pred cccccceeeeeecCcc--ccchhhHHHHHHHHHHHhhccccccee-EEEEecCCccccccccHHHhhcCcc----chHHH
Confidence 3456889999999998 899999999999999999999999999 9999999999999999999987432 44556
Q ss_pred HHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHH
Q 041046 84 YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATAR 163 (243)
Q Consensus 84 ~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a 163 (243)
+.+....+++.-|+++|+|||+-|||.|..+|++|...||+++++++ +.|..|...+|+ |......-+.|.++ ...+
T Consensus 109 evFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~-SkF~tPG~~vGl-FCSTPGvAlaRavp-Rkva 185 (287)
T KOG1682|consen 109 EVFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKN-SKFSTPGAGVGL-FCSTPGVALARAVP-RKVA 185 (287)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecC-ccccCCCCceee-EecCcchhHhhhcc-hhHH
Confidence 67778889999999999999999999999999999999999999988 899999999999 77776777889999 8888
Q ss_pred HHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046 164 RDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL 226 (243)
Q Consensus 164 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~ 226 (243)
.+|++||.++++++|+..||++++||. +++..++.++++.|..++ +.+++.-|.-.+...
T Consensus 186 ~~ML~Tg~Pi~~eeAl~sGlvskvVp~-~el~~e~~~i~~~i~~~s--rav~slgk~f~y~q~ 245 (287)
T KOG1682|consen 186 AYMLMTGLPITGEEALISGLVSKVVPA-EELDKEIEEITNAIKAKS--RAVISLGKEFYYKQL 245 (287)
T ss_pred HHHHHhCCCCchHHHHHhhhhhhcCCH-HHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 999999999999999988 888887777665543
No 91
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.97 E-value=2.2e-30 Score=219.51 Aligned_cols=199 Identities=19% Similarity=0.232 Sum_probs=173.2
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC-CCccccCCChhhHHhcccccchHH
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH-GKFFSNGLDLAWAQAAGSRAGARE 80 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~-g~~F~~G~dl~~~~~~~~~~~~~~ 80 (243)
|.++-.+....|++|||+ ..|++|.+|...+.-.+..++.++.++ +||+.|. |+.||+|.|+........ +++..
T Consensus 40 VL~e~~~~~r~itLNRPK--aLNAlnleMv~~~~~~L~~we~s~~~k-~vIlkgs~~raFCAGgDI~~~ae~~~-d~~~~ 115 (401)
T KOG1684|consen 40 VLVEGKGCARVITLNRPK--ALNALNLEMVLSIYPKLVEWEKSPLVK-LVILKGSGGRAFCAGGDIKAVAESIK-DKETP 115 (401)
T ss_pred eEEecCCceeEEEecCch--hhccccHHHHHHHHHHHHhhccCCCce-EEEEecCCCceeecCccHHHHHHHhh-cCCch
Confidence 567778889999999997 789999999999999999999999999 8888888 599999999986655433 45566
Q ss_pred HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHH-HHHHHhCC
Q 041046 81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTA-LFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~-~l~~~~g~ 159 (243)
..+.++..-+.+...+.++.||.||.++|-..|||+.|+.+--||||+|+ +.|.+||..+|+ +|+.|+. ++++.-|
T Consensus 116 ~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATer-T~~AmPEt~IGl-fPDVG~Sy~lsrlpg- 192 (401)
T KOG1684|consen 116 EVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATER-TVFAMPETGIGL-FPDVGASYFLSRLPG- 192 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeecc-ceeccccccccc-ccCccceeehhhCcc-
Confidence 78889999999999999999999999999999999999999999999988 899999999999 9999964 5555555
Q ss_pred HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCC
Q 041046 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRK 209 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~ 209 (243)
....++.+||.++++.+|+..||..+.|++ +++..--.++.+.+...|
T Consensus 193 -~lg~YLgLTG~rl~GaD~~~~GlATHyv~S-~~l~~Lee~L~~~l~~dp 240 (401)
T KOG1684|consen 193 -YLGLYLGLTGQRLSGADALRCGLATHYVPS-EKLPSLEERLLKNLNDDP 240 (401)
T ss_pred -HHHHhhhhccceecchHHHHhcchhhccch-hhhhHHHHHHhhhcCCCc
Confidence 777899999999999999999999999998 777555555554555443
No 92
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.86 E-value=6.2e-21 Score=154.15 Aligned_cols=152 Identities=22% Similarity=0.262 Sum_probs=117.8
Q ss_pred EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhH
Q 041046 10 VFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESF 89 (243)
Q Consensus 10 v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (243)
|++|.++.+ ++..+...+.+.++.+.+++ ++ .|++. .=|.|.++.. .
T Consensus 1 ~~vv~i~g~-------I~~~~~~~l~~~l~~a~~~~-~~-~vvl~----InSpGG~v~~--------------------~ 47 (187)
T cd07020 1 VYVLEINGA-------ITPATADYLERAIDQAEEGG-AD-ALIIE----LDTPGGLLDS--------------------T 47 (187)
T ss_pred CEEEEEeeE-------EChHHHHHHHHHHHHHHhCC-CC-EEEEE----EECCCCCHHH--------------------H
Confidence 356777755 77788899999999999765 66 45553 1233333332 2
Q ss_pred HHHHHHHhcCCCcEEEEEC---cccchhHHHHHHhccEEEEecCCcceeecccccCCCCchh---------------hHH
Q 041046 90 RPVVAAMMDLPMPTVAAVN---GHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDY---------------FTA 151 (243)
Q Consensus 90 ~~~~~~l~~~~kp~Ia~v~---G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~---------------g~~ 151 (243)
..++.++..+|||+|++++ |+|.|+|+.++++||+++++++ +.|+.+++..+. ++.. ...
T Consensus 48 ~~i~~~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~-a~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 125 (187)
T cd07020 48 REIVQAILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPG-TNIGAAHPVAIG-GGGGSDPVMEKKILNDAVAYIR 125 (187)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCC-CcEEeccccccC-CCCcchHHHHHHHHHHHHHHHH
Confidence 3455567789999999999 9999999999999999999988 899999988554 3322 245
Q ss_pred HHHHHhCCH--HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHH
Q 041046 152 LFRAKVGSA--TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEA 197 (243)
Q Consensus 152 ~l~~~~g~~--~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~ 197 (243)
.++++.| . ..+++++++|+.++|+||+++||+|+++++.+++...
T Consensus 126 ~l~~~~G-~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~ 172 (187)
T cd07020 126 SLAELRG-RNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKK 172 (187)
T ss_pred HHHHHcC-CCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHH
Confidence 7888888 5 6889999999999999999999999999984455543
No 93
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.85 E-value=2.2e-20 Score=149.72 Aligned_cols=143 Identities=18% Similarity=0.211 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEEC
Q 041046 29 SAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVN 108 (243)
Q Consensus 29 ~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~ 108 (243)
-...+|.++++++++|++++ +||+++ +|.|.|+.... .+.+.+..+.+++||+||+++
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~-~vvl~~----~~~gg~~~~~~-----------------~~~~~i~~~~~~~kpVia~v~ 79 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVK-AIVLRV----NSPGGSVTASE-----------------VIRAELAAARAAGKPVVASGG 79 (177)
T ss_pred cCHHHHHHHHHHHhcCCCce-EEEEEe----eCCCcCHHHHH-----------------HHHHHHHHHHhCCCCEEEEEC
Confidence 45789999999999999999 899986 68888776422 234567777889999999999
Q ss_pred cccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HH--------HHHHHhC-CHHHHHHHHhccCCCCHHHH
Q 041046 109 GHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TA--------LFRAKVG-SATARRDVLLRAKKIKGEEA 178 (243)
Q Consensus 109 G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~--------~l~~~~g-~~~~a~~l~l~g~~~~a~eA 178 (243)
|.|.|+|+.++++||+++++++ +.|+.+.+..+. -+... .. .+.+..| .....++++..|..++|++|
T Consensus 80 G~a~g~g~~la~a~D~i~a~~~-a~~~~~G~~~~~-~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A 157 (177)
T cd07014 80 GNAASGGYWISTPANYIVANPS-TLVGSIGIFGVQ-LADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDA 157 (177)
T ss_pred CchhHHHHHHHHhCCEEEECCC-CeEEEechHhhH-HHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHH
Confidence 9999999999999999999988 889988766553 12111 11 3333333 15667888999999999999
Q ss_pred HHcCchhhhcCChHHHHH
Q 041046 179 LRMGLVQAAYDSEEQVAE 196 (243)
Q Consensus 179 ~~~Glv~~v~~~~~~l~~ 196 (243)
++.||||++.+. +++.+
T Consensus 158 ~~~GLVD~v~~~-~e~~~ 174 (177)
T cd07014 158 KANGLVDSLGSF-DDAVA 174 (177)
T ss_pred HHcCCcccCCCH-HHHHH
Confidence 999999999986 66654
No 94
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.72 E-value=1.7e-17 Score=136.62 Aligned_cols=104 Identities=19% Similarity=0.244 Sum_probs=81.3
Q ss_pred CEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHh
Q 041046 9 DVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVES 88 (243)
Q Consensus 9 ~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~ 88 (243)
+|++|.++.|=+...+.-+...+.++.++|+.+.+|++++ +||++ .||.|.|+.....
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~-~ivL~----~~s~Gg~~~~~~~----------------- 58 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVK-AIVLR----VNSPGGSVTASEV----------------- 58 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCce-EEEEE----EcCCCcCHHHHHH-----------------
Confidence 3566666543211233334556899999999999999999 88886 7999999976532
Q ss_pred HHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCccee
Q 041046 89 FRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLY 135 (243)
Q Consensus 89 ~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~ 135 (243)
+.+.+..+..++||+||.++|.|.|+|+.|+++||++|++++ +.++
T Consensus 59 ~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~-a~~g 104 (211)
T cd07019 59 IRAELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPS-TLTG 104 (211)
T ss_pred HHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCC-CEEE
Confidence 234566778899999999999999999999999999999987 6665
No 95
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.67 E-value=5e-16 Score=127.59 Aligned_cols=96 Identities=18% Similarity=0.285 Sum_probs=79.6
Q ss_pred EEEEEEcCCCCCCCCCCC---HHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHH
Q 041046 10 VFVLTLTGSSDVDEHRFG---PSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMV 86 (243)
Q Consensus 10 v~~i~ln~p~~~~~N~~~---~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~ 86 (243)
|++|.++.+ ++ ..++.+|.++|+.+++|++++ +|++++ +|.|.|+....
T Consensus 2 v~vi~i~g~-------i~~~~~~~~~~l~~~l~~a~~d~~i~-~ivl~~----~s~Gg~~~~~~---------------- 53 (208)
T cd07023 2 IAVIDIEGT-------ISDGGGIGADSLIEQLRKAREDDSVK-AVVLRI----NSPGGSVVASE---------------- 53 (208)
T ss_pred EEEEEEEEE-------EcCCCCCCHHHHHHHHHHHHhCCCCc-EEEEEE----ECCCCCHHHHH----------------
Confidence 677777765 54 789999999999999999999 888877 57888876522
Q ss_pred HhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCccee
Q 041046 87 ESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLY 135 (243)
Q Consensus 87 ~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~ 135 (243)
.+.+.+..+..++||+||+++|.|.|+|+.++++||.++++++ +.|+
T Consensus 54 -~i~~~i~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~-s~~g 100 (208)
T cd07023 54 -EIYREIRRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPT-TITG 100 (208)
T ss_pred -HHHHHHHHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCC-CeEE
Confidence 1344566777889999999999999999999999999999987 6665
No 96
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.66 E-value=1.6e-15 Score=119.55 Aligned_cols=135 Identities=21% Similarity=0.220 Sum_probs=102.4
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEE
Q 041046 26 FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
++..++++|.+.|+.++.|+.++ .|++.. .|.|.++... ..+...+..++||+|+
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~-~ivl~~----~s~Gg~~~~~--------------------~~i~~~l~~~~kpvva 62 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVK-AIVLEV----NTPGGRVDAG--------------------MNIVDALQASRKPVIA 62 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCc-eEEEEE----ECCCcCHHHH--------------------HHHHHHHHHhCCCEEE
Confidence 77789999999999999999999 788854 5677765432 3344566678899999
Q ss_pred EECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCch----------hh---HHHHHHHh------CCHHHHHHH
Q 041046 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPD----------YF---TALFRAKV------GSATARRDV 166 (243)
Q Consensus 106 ~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~----------~g---~~~l~~~~------g~~~~a~~l 166 (243)
.++|.|.++|+.++++||.|++.++ +.|++..+..+..... .- ...+...+ . .....+.
T Consensus 63 ~~~g~~~s~g~~la~~~d~~~~~~~-a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~-~~~~~~~ 140 (161)
T cd00394 63 YVGGQAASAGYYIATAANKIVMAPG-TRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQT-TEKLEED 140 (161)
T ss_pred EECChhHHHHHHHHhCCCEEEECCC-CEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHH
Confidence 9999999999999999999999988 7898877766552111 00 01122221 2 3345677
Q ss_pred HhccCCCCHHHHHHcCchhhh
Q 041046 167 LLRAKKIKGEEALRMGLVQAA 187 (243)
Q Consensus 167 ~l~g~~~~a~eA~~~Glv~~v 187 (243)
+..+..++|+||+++||||+|
T Consensus 141 ~~~~~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 141 IEKDLVLTAQEALEYGLVDAL 161 (161)
T ss_pred hcCCcEEcHHHHHHcCCcCcC
Confidence 788999999999999999975
No 97
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.65 E-value=1.2e-15 Score=125.77 Aligned_cols=90 Identities=24% Similarity=0.224 Sum_probs=69.5
Q ss_pred CCC-CCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCC
Q 041046 23 EHR-FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPM 101 (243)
Q Consensus 23 ~N~-~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 101 (243)
.|+ ++..++.+|.++|+++++|++++ +||++. +|.|.++.... .+.+.+..+.. +|
T Consensus 18 ~~~~~~~~~~~~l~~~l~~a~~d~~i~-~Vvl~~----~s~gg~~~~~~-----------------~l~~~l~~~~~-~K 74 (214)
T cd07022 18 LEASSGLTSYEGIAAAIRAALADPDVR-AIVLDI----DSPGGEVAGVF-----------------ELADAIRAARA-GK 74 (214)
T ss_pred ccCCCCcccHHHHHHHHHHHhhCCCCc-EEEEEE----eCCCCcHHHHH-----------------HHHHHHHHHhc-CC
Confidence 453 55789999999999999999999 788864 56666544321 12333444444 69
Q ss_pred cEEEEECcccchhHHHHHHhccEEEEecCCcceee
Q 041046 102 PTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYM 136 (243)
Q Consensus 102 p~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~ 136 (243)
||||+++|.|.|+|+.++++||+++++++ +.|+.
T Consensus 75 pViA~v~g~a~s~gy~lA~~aD~i~a~~~-a~~g~ 108 (214)
T cd07022 75 PIVAFVNGLAASAAYWIASAADRIVVTPT-AGVGS 108 (214)
T ss_pred CEEEEECCchhhHHHHHHhcCCEEEEcCC-CeEEe
Confidence 99999999999999999999999999987 66653
No 98
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.60 E-value=1.2e-14 Score=119.38 Aligned_cols=154 Identities=17% Similarity=0.253 Sum_probs=104.4
Q ss_pred EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhH
Q 041046 10 VFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESF 89 (243)
Q Consensus 10 v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (243)
|++|.++.+ ++ ....+|.+.|+.+.+|++++ .||++. .|.|.++...
T Consensus 2 v~vi~i~g~-------i~-~s~~~l~~~l~~a~~d~~i~-~vvl~~----~s~Gg~~~~~-------------------- 48 (207)
T TIGR00706 2 IAILPVSGA-------IA-VSPEDFDKKIKRIKDDKSIK-ALLLRI----NSPGGTVVAS-------------------- 48 (207)
T ss_pred EEEEEEEEE-------Ee-cCHHHHHHHHHHHhhCCCcc-EEEEEe----cCCCCCHHHH--------------------
Confidence 677888765 33 34678999999999999999 888876 3677766532
Q ss_pred HHHHHHHhcCC--CcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccc------------cCCC-----------
Q 041046 90 RPVVAAMMDLP--MPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVD------------IGAT----------- 144 (243)
Q Consensus 90 ~~~~~~l~~~~--kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~------------~Gl~----------- 144 (243)
.++...|.+++ ||+|+.++|.|.|+|+.++++||.++++++ +.++...+. +|+.
T Consensus 49 ~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~-a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~ 127 (207)
T TIGR00706 49 EEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPG-TITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKD 127 (207)
T ss_pred HHHHHHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCC-CeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcC
Confidence 22344455555 999999999999999999999999999987 666532221 2221
Q ss_pred -------CchhhHHHH---------------H--HHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHH
Q 041046 145 -------LPDYFTALF---------------R--AKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMR 200 (243)
Q Consensus 145 -------~p~~g~~~l---------------~--~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~ 200 (243)
+..-.-..+ . |.+. .....+ +..|+.+++++|++.||||++... +++.+.+.+
T Consensus 128 ~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~-~~~~~~-~~~~~~~~~~~A~~~gLvD~i~~~-~~~~~~~~~ 204 (207)
T TIGR00706 128 IGSPTRELTPEERDILQNLVNESYEQFVQVVAKGRNLP-VEDVKK-FADGRVFTGRQALKLRLVDKLGTE-DDALKWLAE 204 (207)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHH-HhcCCcccHHHHHHcCCCcccCCH-HHHHHHHHH
Confidence 000000111 1 1122 222233 467899999999999999999865 665555443
No 99
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.58 E-value=1.1e-14 Score=114.70 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEEC
Q 041046 29 SAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVN 108 (243)
Q Consensus 29 ~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~ 108 (243)
.+.+.+.+.|+.+..+..+ .+.+.+.|+ ++.. ...++..+..++||+++.++
T Consensus 15 ~~~~~~~~~l~~~~~~~~i--~l~inspGG------~~~~--------------------~~~i~~~i~~~~~pvi~~v~ 66 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI--TVRINSPGG------DVFA--------------------GLAIYNALKRHKGKVTVKID 66 (160)
T ss_pred cCHHHHHHHHHhccCCCCE--EEEEECCCC------CHHH--------------------HHHHHHHHHhcCCCEEEEEc
Confidence 5778889999998887444 466655543 2221 23466677788999999999
Q ss_pred cccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh----------------HHHHHHHhCC-HHHHHHHHhccC
Q 041046 109 GHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF----------------TALFRAKVGS-ATARRDVLLRAK 171 (243)
Q Consensus 109 G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g----------------~~~l~~~~g~-~~~a~~l~l~g~ 171 (243)
|.|.|+|+.++++||.|+++++ +.|.++....+. .+... ...+.++.|. .....+++..+.
T Consensus 67 g~a~s~g~~ia~a~d~~~~~~~-a~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~ 144 (160)
T cd07016 67 GLAASAASVIAMAGDEVEMPPN-AMLMIHNPSTGA-AGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAET 144 (160)
T ss_pred chHHhHHHHHHhcCCeEEECCC-cEEEEECCcccc-CcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCe
Confidence 9999999999999999999988 889987776665 33321 2236677774 356667777677
Q ss_pred CCCHHHHHHcCchhhh
Q 041046 172 KIKGEEALRMGLVQAA 187 (243)
Q Consensus 172 ~~~a~eA~~~Glv~~v 187 (243)
.++|+||+++||+|+|
T Consensus 145 ~l~a~eA~~~GliD~v 160 (160)
T cd07016 145 WLTAQEAVELGFADEI 160 (160)
T ss_pred ECcHHHHHHcCCCCcC
Confidence 8999999999999975
No 100
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.58 E-value=1.2e-14 Score=135.62 Aligned_cols=173 Identities=20% Similarity=0.258 Sum_probs=120.2
Q ss_pred EeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHH
Q 041046 6 KHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYM 85 (243)
Q Consensus 6 ~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~ 85 (243)
.++.|++|.++.+-....+..+....+.+.+.++++.+|++|| .||++-. |.|.+....
T Consensus 306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~Vk-aIVLrin----SpGGs~~as---------------- 364 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIK-AVVLRIN----SPGGSVFAS---------------- 364 (584)
T ss_pred CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCce-EEEEEec----CCCCCHHHH----------------
Confidence 4578999999866311233334445678889999999999999 8888753 222222111
Q ss_pred HHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcce------eecc------cccCCCCchhh-HH-
Q 041046 86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVL------YMSE------VDIGATLPDYF-TA- 151 (243)
Q Consensus 86 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f------~~pe------~~~Gl~~p~~g-~~- 151 (243)
+.+.+.+.++...+||||+.++|.|.+||+.++++||.++|++. +.+ +.+. .++|+. |... +.
T Consensus 365 -e~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~-t~~GSIGv~~~~~~~~~~l~klGi~-~~~~~t~~ 441 (584)
T TIGR00705 365 -EIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPN-TITGSIGVFSVLPTFENSLDRIGVH-VDGVSTHE 441 (584)
T ss_pred -HHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCC-CeeecCEEEEEccCHHHHHHhcCCc-eEEEeccC
Confidence 11233445566778999999999999999999999999999887 554 4442 467773 4322 11
Q ss_pred ---------------------------HHHHHhCCHHH-----HHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHH
Q 041046 152 ---------------------------LFRAKVGSATA-----RRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASM 199 (243)
Q Consensus 152 ---------------------------~l~~~~g~~~~-----a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~ 199 (243)
.+..+++ ..+ ..+.+.+|+.+++++|+++||||++.. + ++|.
T Consensus 442 ~~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va-~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~----~-~~Ai 515 (584)
T TIGR00705 442 LANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVS-AGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGG----L-DEAV 515 (584)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCC----H-HHHH
Confidence 1222444 333 567788999999999999999999953 2 5577
Q ss_pred HHHHHHhcC
Q 041046 200 RLAKQMAGR 208 (243)
Q Consensus 200 ~~a~~la~~ 208 (243)
+.|+++++.
T Consensus 516 ~~a~~la~~ 524 (584)
T TIGR00705 516 AKAAKLAHC 524 (584)
T ss_pred HHHHHHcCC
Confidence 777787776
No 101
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.50 E-value=8.3e-13 Score=105.60 Aligned_cols=151 Identities=23% Similarity=0.320 Sum_probs=106.9
Q ss_pred EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhH
Q 041046 10 VFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESF 89 (243)
Q Consensus 10 v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (243)
|++|.++.+ +++...+.+.+.|+++.+++ ++ .|++.= =|.|.++.. .
T Consensus 1 v~vi~i~g~-------I~~~~~~~l~~~l~~a~~~~-~~-~ivl~i----nspGG~v~~--------------------~ 47 (178)
T cd07021 1 VYVIPIEGE-------IDPGLAAFVERALKEAKEEG-AD-AVVLDI----DTPGGRVDS--------------------A 47 (178)
T ss_pred CEEEEEeeE-------ECHHHHHHHHHHHHHHHhCC-CC-eEEEEE----ECcCCCHHH--------------------H
Confidence 456777765 78888999999999999886 55 444421 233333332 3
Q ss_pred HHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCch-----h----h---HHHHHHHh
Q 041046 90 RPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPD-----Y----F---TALFRAKV 157 (243)
Q Consensus 90 ~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~-----~----g---~~~l~~~~ 157 (243)
..++..|.++++|+|+.|+|.|.++|+.++++||+++++++ +.++.+++-.+. ++ - . ..-+.++-
T Consensus 48 ~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~-a~iG~~~~v~~~--~~~~~~~K~~~~~~~~~~~~A~~~ 124 (178)
T cd07021 48 LEIVDLILNSPIPTIAYVNDRAASAGALIALAADEIYMAPG-ATIGAAEPIPGD--GNGAADEKVQSYWRAKMRAAAEKK 124 (178)
T ss_pred HHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCC-CeEecCeeEcCC--CccchhHHHHHHHHHHHHHHHHHh
Confidence 55667888899999999999999999999999999999988 888876543221 11 0 0 01122333
Q ss_pred C-CHHHHHHHHhcc-------------CCCCHHHHHHcCchhhhcCChHHHHH
Q 041046 158 G-SATARRDVLLRA-------------KKIKGEEALRMGLVQAAYDSEEQVAE 196 (243)
Q Consensus 158 g-~~~~a~~l~l~g-------------~~~~a~eA~~~Glv~~v~~~~~~l~~ 196 (243)
| +...+..|+-.. ..++++||++.|++|.+.++.++|..
T Consensus 125 gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll~ 177 (178)
T cd07021 125 GRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELLV 177 (178)
T ss_pred CCCHHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHhh
Confidence 3 255566666544 37999999999999999998776653
No 102
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.45 E-value=4.6e-13 Score=111.07 Aligned_cols=88 Identities=16% Similarity=0.195 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEE
Q 041046 26 FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
-+...+.++.+.|+++.+|++|+ +||++..+..| ++.+++++ .+.+..+...+|||||
T Consensus 26 ~~~~~~~~l~~~l~~a~~d~~ik-~vvL~~~s~gg-~~~~~~el--------------------~~~i~~~~~~~kpVia 83 (222)
T cd07018 26 SSELSLRDLLEALEKAAEDDRIK-GIVLDLDGLSG-GLAKLEEL--------------------RQALERFRASGKPVIA 83 (222)
T ss_pred cCCccHHHHHHHHHHHhcCCCeE-EEEEECCCCCC-CHHHHHHH--------------------HHHHHHHHHhCCeEEE
Confidence 34678899999999999999999 99999877666 54444433 3344455567999999
Q ss_pred EECcccchhHHHHHHhccEEEEecCCcceeec
Q 041046 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMS 137 (243)
Q Consensus 106 ~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~p 137 (243)
.++| |.++|+.++++||.+++.+. +.++..
T Consensus 84 ~~~~-~~sggy~lasaad~I~a~p~-~~vg~i 113 (222)
T cd07018 84 YADG-YSQGQYYLASAADEIYLNPS-GSVELT 113 (222)
T ss_pred EeCC-CCchhhhhhhhCCEEEECCC-ceEEee
Confidence 9998 88999999999999999887 777753
No 103
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.26 E-value=3.4e-10 Score=89.81 Aligned_cols=152 Identities=18% Similarity=0.235 Sum_probs=107.4
Q ss_pred EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhH
Q 041046 10 VFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESF 89 (243)
Q Consensus 10 v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (243)
|++|.++.. +++.+...|.+.++.++++ ..+ .|++. .=|.|..+.. .
T Consensus 1 v~vi~i~G~-------I~~~~~~~l~~~l~~A~~~-~~~-~i~l~----inSPGG~v~~--------------------~ 47 (172)
T cd07015 1 VYVAQIKGQ-------ITSYTYDQFDRYITIAEQD-NAE-AIIIE----LDTPGGRADA--------------------A 47 (172)
T ss_pred CEEEEEeeE-------ECHhHHHHHHHHHHHHhcC-CCC-eEEEE----EECCCCCHHH--------------------H
Confidence 356677654 7888889999999999875 455 45542 2334444432 2
Q ss_pred HHHHHHHhcCCCcEEEEEC---cccchhHHHHHHhccEEEEecCCcceeecccccCCCCc-----hhh----HH------
Q 041046 90 RPVVAAMMDLPMPTVAAVN---GHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLP-----DYF----TA------ 151 (243)
Q Consensus 90 ~~~~~~l~~~~kp~Ia~v~---G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p-----~~g----~~------ 151 (243)
..++..+...++||++.+. |.|.++|..++++||.+++.++ +.++...+..|. .+ ... ..
T Consensus 48 ~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~-s~iG~~~pi~~~-g~~~~~~~~~~ki~~~~~~~~r 125 (172)
T cd07015 48 GNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPG-TSIGACRPILGY-SQNGSIIEAPPKITNYFIAYIK 125 (172)
T ss_pred HHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCC-CEEEEccccccC-CCCCccccchHHHHHHHHHHHH
Confidence 3445566778999999999 9999999999999999999998 778866654332 12 100 11
Q ss_pred HHHHHhC-CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHH
Q 041046 152 LFRAKVG-SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAE 196 (243)
Q Consensus 152 ~l~~~~g-~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~ 196 (243)
-+.+.-| +...+..++.....++++||+++|++|.|..+.++|.+
T Consensus 126 ~~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~~~ll~ 171 (172)
T cd07015 126 SLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELLK 171 (172)
T ss_pred HHHHHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCCHHHHhh
Confidence 1222223 24567777888889999999999999999998777653
No 104
>PRK10949 protease 4; Provisional
Probab=99.04 E-value=3.7e-09 Score=99.27 Aligned_cols=166 Identities=20% Similarity=0.281 Sum_probs=101.8
Q ss_pred eCCEEEEEEcCCCC---CCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHH
Q 041046 7 HGDVFVLTLTGSSD---VDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLL 83 (243)
Q Consensus 7 ~~~v~~i~ln~p~~---~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~ 83 (243)
.+.|++|.++.+=. +..+.++ .+.+.+.|+++.+|++|| .||++-. |.|......
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~---~~~~~~~l~~a~~D~~vk-aVvLrIn----SpGGs~~as-------------- 382 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVG---GDTTAAQIRDARLDPKVK-AIVLRVN----SPGGSVTAS-------------- 382 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcC---HHHHHHHHHHHHhCCCCc-EEEEEec----CCCCcHHHH--------------
Confidence 46788888863210 0112333 357888999999999999 7888653 233322211
Q ss_pred HHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecc------------cccCCCC------
Q 041046 84 YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSE------------VDIGATL------ 145 (243)
Q Consensus 84 ~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe------------~~~Gl~~------ 145 (243)
+.+.+.+.++....||+|+.+.|.|..||+.++++||.++|.+. +..+--. -++|+..
T Consensus 383 ---e~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~-t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~ 458 (618)
T PRK10949 383 ---EVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPS-TLTGSIGIFGVINTVENSLDSIGVHTDGVSTS 458 (618)
T ss_pred ---HHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCC-CceeeCcEEEEccCHHHHHHhcCCceeEEecc
Confidence 12344444555678999999999999999999999999999875 4333100 0122210
Q ss_pred -----------chhhHHH-----------HHH------HhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHH
Q 041046 146 -----------PDYFTAL-----------FRA------KVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEA 197 (243)
Q Consensus 146 -----------p~~g~~~-----------l~~------~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~ 197 (243)
+.-.-.. +.. .+. .... +-+..|+.+++++|++.||||++..- ++..+.
T Consensus 459 ~~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~-~~~v-~~ia~Grv~tg~~A~~~GLVD~lG~~-~~ai~~ 535 (618)
T PRK10949 459 PLADVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKT-PEQI-DKIAQGHVWTGQDAKANGLVDSLGDF-DDAVAK 535 (618)
T ss_pred ccCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-HHHH-HHHhcCCcccHHHHHHcCCCccCCCH-HHHHHH
Confidence 0000000 111 122 2222 23568999999999999999999864 554444
Q ss_pred HHHH
Q 041046 198 SMRL 201 (243)
Q Consensus 198 a~~~ 201 (243)
+.++
T Consensus 536 a~~~ 539 (618)
T PRK10949 536 AAEL 539 (618)
T ss_pred HHHH
Confidence 4443
No 105
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.98 E-value=1.9e-10 Score=99.36 Aligned_cols=187 Identities=14% Similarity=0.062 Sum_probs=149.2
Q ss_pred CEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHHHHHHHHH
Q 041046 9 DVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARERLLYMVE 87 (243)
Q Consensus 9 ~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~ 87 (243)
++..+.++ | +.|..|.++..++..-++.+..+..+. ..++|+.. +.|++|.|..+..... ......+.-
T Consensus 66 ~~~~~dmv-i---eav~edl~Lk~~l~~~le~v~~~~~i~-gsntSs~~~~~isa~ld~~e~vvg~-----h~fspa~~m 135 (380)
T KOG1683|consen 66 GFANADMV-I---EAVFEDLELKHELFKSLEKVEPPKCIR-GSNTSSLDINVISAGLDRPEMVVGM-----HFFSPAHWM 135 (380)
T ss_pred ccccccee-c---cchhhhHHHHHHHHHHHHhhcCCccee-eeccccCChHHHhhccCchhhhccc-----cccCHHHHH
Confidence 56677777 6 689999999999999999999988888 78888877 9999999999876531 334455566
Q ss_pred hHHHHHHHHhcCCCcEEEEECcccchhH--HHHHHhccEEEEecCC-cceeecccccCCCCchhhHHHHHHHhCCHHHHH
Q 041046 88 SFRPVVAAMMDLPMPTVAAVNGHAAAAG--FTLALSHDYVIMRRDK-GVLYMSEVDIGATLPDYFTALFRAKVGSATARR 164 (243)
Q Consensus 88 ~~~~~~~~l~~~~kp~Ia~v~G~a~G~G--~~la~~~D~~ia~~~~-~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~ 164 (243)
.+++++.+.+.++.|+.+++||++--++ +.++.+|+|++...-. ...+..+...++..|.+-...+...+| ...+-
T Consensus 136 ~LlEii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fG-f~~g~ 214 (380)
T KOG1683|consen 136 QLLEIILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFG-FRVGE 214 (380)
T ss_pred HHHHHHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcC-ccccH
Confidence 7899999999999999999999999998 8899999999997321 334778888886578887777777777 55555
Q ss_pred HHHhccCCCCHHHHHHcCchhhhcCC-hHHHHHHHHHHHHHHh
Q 041046 165 DVLLRAKKIKGEEALRMGLVQAAYDS-EEQVAEASMRLAKQMA 206 (243)
Q Consensus 165 ~l~l~g~~~~a~eA~~~Glv~~v~~~-~~~l~~~a~~~a~~la 206 (243)
.-+-.+.-++..||.+-|+++.+.++ .+++.+....-.+.-.
T Consensus 215 ~~L~d~~gfdv~eal~~gl~~~~~~r~~eel~~~~~~g~kT~k 257 (380)
T KOG1683|consen 215 RALADGVGFDVAEALAVGLGDEIGPRIEEELLEKGRAGIKTGK 257 (380)
T ss_pred HHHhhccCccHHHHHhhccchhccchhHHHHHHHHhhhhhccC
Confidence 55667889999999999999999996 5777777665444433
No 106
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.91 E-value=4.5e-08 Score=77.23 Aligned_cols=134 Identities=16% Similarity=0.152 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCe-EEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046 26 FGPSAIDSILSAIAKAKAEATPGS-ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~d~~i~~-vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
++..+.+++.+.|..++.++..+. ++.+.+.| .++.. ...++..+...++|++
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpG------G~v~~--------------------~~~i~~~i~~~~~~v~ 62 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYINSPG------GDVFA--------------------GMAIYDTIKFIKADVV 62 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCC------CcHHH--------------------HHHHHHHHHhcCCCce
Confidence 677899999999999998866552 33344333 33322 2445566677889999
Q ss_pred EEECcccchhHHHHHHhcc--EEEEecCCcceeecccccCCCCchhh-HH---------------HHHHHhC-CHHHHHH
Q 041046 105 AAVNGHAAAAGFTLALSHD--YVIMRRDKGVLYMSEVDIGATLPDYF-TA---------------LFRAKVG-SATARRD 165 (243)
Q Consensus 105 a~v~G~a~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~---------------~l~~~~g-~~~~a~~ 165 (243)
+.+.|.|.++|..++++|| .|++.++ +.+.+....-+. ..... .. .+.+.-| ......+
T Consensus 63 ~~~~g~aaS~~~~i~~a~~~g~r~~~p~-a~~~ih~~~~~~-~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~ 140 (162)
T cd07013 63 TIIDGLAASMGSVIAMAGAKGKRFILPN-AMMMIHQPWGGT-LGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHA 140 (162)
T ss_pred EEEEeehhhHHHHHHHcCCCCcEEEecC-EEEEEccCcccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 9999999999999999999 5777777 666553332222 11110 11 1111222 1334445
Q ss_pred HHhccCCCCHHHHHHcCchhhh
Q 041046 166 VLLRAKKIKGEEALRMGLVQAA 187 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~v 187 (243)
++-.+.-++|+||+++||||++
T Consensus 141 ~~~~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 141 DLERDTWLSAREAVEYGFADTI 162 (162)
T ss_pred HHcCCccccHHHHHHcCCCCcC
Confidence 5555666799999999999975
No 107
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.88 E-value=3.5e-08 Score=85.73 Aligned_cols=164 Identities=20% Similarity=0.187 Sum_probs=93.2
Q ss_pred eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHH
Q 041046 7 HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMV 86 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~ 86 (243)
.+.|++|.|+.+= .......+-+++...++.+..+ . .||++-. |.|..+.....
T Consensus 89 ~~~v~VI~~~G~I---~~~~~~~l~e~i~a~l~~A~~~---~-aVvLrid----SpGG~v~~s~~--------------- 142 (330)
T PRK11778 89 KPRLFVLDFKGDI---DASEVESLREEITAILAVAKPG---D-EVLLRLE----SPGGVVHGYGL--------------- 142 (330)
T ss_pred CCeEEEEEEEEEE---CCCcchhhHHHHHHHHHhccCC---C-eEEEEEe----CCCCchhHHHH---------------
Confidence 3679999998651 1111223445566555555543 2 3444322 22332222110
Q ss_pred HhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccc------------cCCC----------
Q 041046 87 ESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVD------------IGAT---------- 144 (243)
Q Consensus 87 ~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~------------~Gl~---------- 144 (243)
....+.++....||+++.+.+.|..||+.++++||.+|+.+. +.++--.+- +|+.
T Consensus 143 --a~~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~-a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK 219 (330)
T PRK11778 143 --AASQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPF-AIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYK 219 (330)
T ss_pred --HHHHHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCC-CeEEeeeeeeeccCHHHHHHHCCCceEEEEecCcc
Confidence 111134556678999999999999999999999999999887 555521111 1110
Q ss_pred -----C---chhhHHH-----------HHHHh--CCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHH
Q 041046 145 -----L---PDYFTAL-----------FRAKV--GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMR 200 (243)
Q Consensus 145 -----~---p~~g~~~-----------l~~~~--g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~ 200 (243)
+ .+-+-.. +...+ +++....+-+.+|+.+++++|++.||||++... +++...+.+
T Consensus 220 ~a~~pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~-dd~i~~~~~ 295 (330)
T PRK11778 220 RTLTLFGENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTS-DDYLLELMK 295 (330)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCH-HHHHHHHHh
Confidence 0 0000001 11111 111111234568999999999999999999976 666554443
No 108
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.84 E-value=4.6e-07 Score=76.34 Aligned_cols=138 Identities=20% Similarity=0.252 Sum_probs=94.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcE
Q 041046 24 HRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPT 103 (243)
Q Consensus 24 N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ 103 (243)
-.++++-.+...+.++.+.+..-+ +|-+.-.++++. |.+.++ .-....+.+.+..+...++|+
T Consensus 77 G~~~~~g~rKa~R~~~lA~~~~lP--vV~lvDtpGa~~-g~~aE~--------------~G~~~~ia~~~~~~s~~~VP~ 139 (256)
T PRK12319 77 GQPHPEGYRKALRLMKQAEKFGRP--VVTFINTAGAYP-GVGAEE--------------RGQGEAIARNLMEMSDLKVPI 139 (256)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCC--EEEEEECCCcCC-CHhHHh--------------ccHHHHHHHHHHHHhCCCCCE
Confidence 368899999999999999876544 455544444442 332211 112345667777888999999
Q ss_pred EEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCc
Q 041046 104 VAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGL 183 (243)
Q Consensus 104 Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Gl 183 (243)
|++|-|.|.|||......||++++.++ +.++ +..|.+.+..+-+.-.....+.+.+ .+++.++++.|+
T Consensus 140 IsVI~G~~~gGgA~a~~~~D~v~m~~~-a~~~-------v~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~ 207 (256)
T PRK12319 140 IAIIIGEGGSGGALALAVADQVWMLEN-TMYA-------VLSPEGFASILWKDGSRATEAAELM----KITAGELLEMGV 207 (256)
T ss_pred EEEEeCCcCcHHHHHhhcCCEEEEecC-ceEE-------EcCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCC
Confidence 999999999999988889999999998 5554 2134444444433222122323333 779999999999
Q ss_pred hhhhcCC
Q 041046 184 VQAAYDS 190 (243)
Q Consensus 184 v~~v~~~ 190 (243)
||.|++.
T Consensus 208 iD~ii~e 214 (256)
T PRK12319 208 VDKVIPE 214 (256)
T ss_pred CcEecCC
Confidence 9999974
No 109
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.84 E-value=1.3e-07 Score=77.49 Aligned_cols=142 Identities=15% Similarity=0.143 Sum_probs=96.9
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCC-eEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046 26 FGPSAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~d~~i~-~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
++..+..++.+.|..++..+..+ ..+.+.+.| .++.. ...++..|..++.|++
T Consensus 44 I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG------G~v~~--------------------g~~I~d~i~~~~~~v~ 97 (207)
T PRK12553 44 VDDASANDVMAQLLVLESIDPDRDITLYINSPG------GSVTA--------------------GDAIYDTIQFIRPDVQ 97 (207)
T ss_pred ECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC------CcHHH--------------------HHHHHHHHHhcCCCcE
Confidence 88999999999999999754323 134444433 33332 2345666777888999
Q ss_pred EEECcccchhHHHHHHhcc--EEEEecCCcceeeccccc-CCCCchh-h---------------HHHHHHHhCC-HHHHH
Q 041046 105 AAVNGHAAAAGFTLALSHD--YVIMRRDKGVLYMSEVDI-GATLPDY-F---------------TALFRAKVGS-ATARR 164 (243)
Q Consensus 105 a~v~G~a~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~-Gl~~p~~-g---------------~~~l~~~~g~-~~~a~ 164 (243)
+.+.|.|.+.|..++++|| .|++.++ +.|.+-.... |...... - ...+.++-|. .....
T Consensus 98 t~~~G~aaSaa~lI~~ag~~~~R~~~p~-s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~ 176 (207)
T PRK12553 98 TVCTGQAASAGAVLLAAGTPGKRFALPN-ARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIR 176 (207)
T ss_pred EEEEeehhhHHHHHHHcCCcCcEEECCC-chhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999999999 5899888 6666554432 2101000 0 1123333331 34556
Q ss_pred HHHhccCCCCHHHHHHcCchhhhcCChHHH
Q 041046 165 DVLLRAKKIKGEEALRMGLVQAAYDSEEQV 194 (243)
Q Consensus 165 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l 194 (243)
+++-.+.-++|+||+++||||+|+++.++|
T Consensus 177 ~~~~~~~~lta~EA~e~GliD~I~~~~~dl 206 (207)
T PRK12553 177 KDTDRDKWLTAEEAKDYGLVDQIITSYRDL 206 (207)
T ss_pred HHHhcCccccHHHHHHcCCccEEcCchhhc
Confidence 666678889999999999999999885554
No 110
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.83 E-value=4.6e-08 Score=79.81 Aligned_cols=137 Identities=15% Similarity=0.068 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCC-eEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046 26 FGPSAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~d~~i~-~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
++.++.+.+...|..++.++..+ ..+.+.+.| .++.. ...++..|...+.|++
T Consensus 40 I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG------G~v~~--------------------g~~I~d~i~~~~~~v~ 93 (200)
T PRK00277 40 VEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG------GSVTA--------------------GLAIYDTMQFIKPDVS 93 (200)
T ss_pred ECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------CcHHH--------------------HHHHHHHHHhcCCCEE
Confidence 78899999999999988654333 134444433 33322 2344556667788999
Q ss_pred EEECcccchhHHHHHHhcc--EEEEecCCcceeecccccCCCCchh-h----H-----------HHHHHHhC-CHHHHHH
Q 041046 105 AAVNGHAAAAGFTLALSHD--YVIMRRDKGVLYMSEVDIGATLPDY-F----T-----------ALFRAKVG-SATARRD 165 (243)
Q Consensus 105 a~v~G~a~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~~p~~-g----~-----------~~l~~~~g-~~~~a~~ 165 (243)
+.+.|.|.+.|..++++++ .|++.++ +.+.+....-|. .... . + ..+.++-| ......+
T Consensus 94 t~~~G~aaS~a~~I~~ag~~~~r~~~p~-s~imih~p~~~~-~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~ 171 (200)
T PRK00277 94 TICIGQAASMGAFLLAAGAKGKRFALPN-SRIMIHQPLGGF-QGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEK 171 (200)
T ss_pred EEEEeEeccHHHHHHhcCCCCCEEEcCC-ceEEeccCcccc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 9999999999999998754 6777776 556554332221 1000 0 0 11222333 1344455
Q ss_pred HHhccCCCCHHHHHHcCchhhhcCC
Q 041046 166 VLLRAKKIKGEEALRMGLVQAAYDS 190 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
++-.+.-++|+||+++||+|+|+.+
T Consensus 172 ~~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 172 DTDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred HhhCCccccHHHHHHcCCccEEeec
Confidence 5666778999999999999999976
No 111
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.80 E-value=4.5e-08 Score=85.31 Aligned_cols=164 Identities=20% Similarity=0.236 Sum_probs=99.6
Q ss_pred CEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHh
Q 041046 9 DVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVES 88 (243)
Q Consensus 9 ~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~ 88 (243)
.|++|.++.+=.-..+....-..+.+.+.++.+..++.++ .|+|.= =|.|...-.. +.
T Consensus 60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk-~vvL~i----nSPGG~v~as-----------------~~ 117 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVK-AVVLRI----NSPGGSVVAS-----------------EL 117 (317)
T ss_pred EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCc-eEEEEE----ECcCCchhHH-----------------HH
Confidence 4788888754100011111234677888889999999999 444422 2223322211 12
Q ss_pred HHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhC----------
Q 041046 89 FRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVG---------- 158 (243)
Q Consensus 89 ~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g---------- 158 (243)
+.+.++++..-. ||++.|.+.|..||+.++++||.+||++. +..| .+|...-......+.++.|
T Consensus 118 i~~~l~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~-si~G----SIGVi~~~~~~~~l~~k~Gv~~~~~~ag~ 191 (317)
T COG0616 118 IARALKRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPS-SITG----SIGVISGAPNFEELLEKLGVEKEVITAGE 191 (317)
T ss_pred HHHHHHHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCC-ceee----eceeEEecCCHHHHHHhcCCceeeeeccc
Confidence 444555555555 99999999999999999999999999887 6666 3443111111112222222
Q ss_pred ---------------------------------------CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHH
Q 041046 159 ---------------------------------------SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASM 199 (243)
Q Consensus 159 ---------------------------------------~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~ 199 (243)
.......-+.+|+.+++++|++.||||++... ++....+.
T Consensus 192 ~k~~~~~~~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~-~~av~~~~ 270 (317)
T COG0616 192 YKDILSPFRPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGL-DDAVKDAA 270 (317)
T ss_pred cccccCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCH-HHHHHHHH
Confidence 01111345678999999999999999999876 44444443
Q ss_pred HH
Q 041046 200 RL 201 (243)
Q Consensus 200 ~~ 201 (243)
+.
T Consensus 271 ~~ 272 (317)
T COG0616 271 EL 272 (317)
T ss_pred Hh
Confidence 33
No 112
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.79 E-value=2.7e-07 Score=75.04 Aligned_cols=144 Identities=12% Similarity=0.029 Sum_probs=93.8
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046 26 FGPSAIDSILSAIAKAKA-EATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~-d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
++.++...+...|..++. ++.-...+.+.+. |.++.. ...++..|...+.||+
T Consensus 32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSp------GG~v~a--------------------g~aI~d~i~~~~~~V~ 85 (197)
T PRK14512 32 INKDLSELFQEKILLLEALDSKKPIFVYIDSE------GGDIDA--------------------GFAIFNMIRFVKPKVF 85 (197)
T ss_pred EcHHHHHHHHHHHHHHHhcCCCCCEEEEEECC------CCCHHH--------------------HHHHHHHHHhCCCCEE
Confidence 888999999999988886 3322213444443 333332 2445666777899999
Q ss_pred EEECcccchhHHHHHHhccE--EEEecCCcceeecccccCCCCchhh-HH---------------HHHHHhC-CHHHHHH
Q 041046 105 AAVNGHAAAAGFTLALSHDY--VIMRRDKGVLYMSEVDIGATLPDYF-TA---------------LFRAKVG-SATARRD 165 (243)
Q Consensus 105 a~v~G~a~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~~p~~g-~~---------------~l~~~~g-~~~~a~~ 165 (243)
+.+.|.|.+.|..++++||. |++.++ +.+-+-...-++ ..... .. .+.++-| ......+
T Consensus 86 t~v~G~AaSaaslIl~ag~~~~R~~~p~-s~imiHqP~~~~-~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~ 163 (197)
T PRK14512 86 TIGVGLVASAAALIFLAAKKESRFSLPN-ARYLLHQPLSGF-KGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEK 163 (197)
T ss_pred EEEEeeeHhHHHHHHhcCCcCceeECCC-CcEEEEcCcccc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 99999999999999999985 888888 555443332222 11111 00 1111222 1233445
Q ss_pred HHhccCCCCHHHHHHcCchhhhcCChHHHHHH
Q 041046 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEA 197 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~ 197 (243)
++-....++|+||+++||+|+|+++.+++.+.
T Consensus 164 ~~~~d~~lta~EA~~yGliD~I~~~~~~l~~~ 195 (197)
T PRK14512 164 DTDRDFWLDSSSAVKYGLVFEVVETRLELEEF 195 (197)
T ss_pred hhhcCcccCHHHHHHcCCccEeecCcHHhHhh
Confidence 55556679999999999999999886666543
No 113
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.75 E-value=2.2e-07 Score=73.97 Aligned_cols=142 Identities=16% Similarity=0.141 Sum_probs=95.9
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCe-EEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHH
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGS-ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFR 90 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~-vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (243)
.|.++.+ ++.+...++...+..+..++..+. .+.+.+.|+ ++.. ..
T Consensus 11 ~i~i~g~-------I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG------~v~~--------------------~~ 57 (171)
T cd07017 11 IIFLGGP-------IDDEVANLIIAQLLYLESEDPKKPIYLYINSPGG------SVTA--------------------GL 57 (171)
T ss_pred EEEEcCE-------EcHHHHHHHHHHHHHHHccCCCCceEEEEECCCC------CHHH--------------------HH
Confidence 4556555 788999999999999998655441 344444333 3332 23
Q ss_pred HHHHHHhcCCCcEEEEECcccchhHHHHHHhcc--EEEEecCCcceeecccccCCCCchh--h-------------HHHH
Q 041046 91 PVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHD--YVIMRRDKGVLYMSEVDIGATLPDY--F-------------TALF 153 (243)
Q Consensus 91 ~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~~p~~--g-------------~~~l 153 (243)
.++..+...+.|+++.+.|.|.++|..+++++| .|++.++ +.|.+-+...+..-+.. . ...+
T Consensus 58 ~i~~~l~~~~~~v~t~~~g~aaS~~~~i~~~g~~~~r~~~~~-a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~ 136 (171)
T cd07017 58 AIYDTMQYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPN-SRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEIL 136 (171)
T ss_pred HHHHHHHhcCCCEEEEEEeEehhHHHHHHHcCCCCCEEEccc-hHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667899999999999999999999999 7999988 77777666555411100 0 0111
Q ss_pred HHHhCC-HHHHHHHHhccCCCCHHHHHHcCchhhh
Q 041046 154 RAKVGS-ATARRDVLLRAKKIKGEEALRMGLVQAA 187 (243)
Q Consensus 154 ~~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v 187 (243)
.++-|. .....+++-.+.-++|+||+++||+|+|
T Consensus 137 ~~~tg~~~~~i~~~~~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 137 AKHTGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred HHHhCCCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence 222231 2344556667788999999999999986
No 114
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.69 E-value=3e-06 Score=73.23 Aligned_cols=138 Identities=16% Similarity=0.189 Sum_probs=94.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcE
Q 041046 24 HRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPT 103 (243)
Q Consensus 24 N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ 103 (243)
-.++++.++...+.++.+++..-+ +|-+--.+++++ |.+-++. -....+.+.+..+....+|+
T Consensus 133 G~~~p~g~rKa~Rlm~lA~~f~lP--IItlvDTpGA~~-G~~AE~~--------------G~~~aiar~l~~~a~~~VP~ 195 (322)
T CHL00198 133 GMPSPGGYRKALRLMKHANKFGLP--ILTFIDTPGAWA-GVKAEKL--------------GQGEAIAVNLREMFSFEVPI 195 (322)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCC--EEEEEeCCCcCc-CHHHHHH--------------hHHHHHHHHHHHHHcCCCCE
Confidence 368899999999999999976554 444444344443 3222211 11334566677778899999
Q ss_pred EEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCc
Q 041046 104 VAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGL 183 (243)
Q Consensus 104 Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Gl 183 (243)
|++|-|.|.|||......||++++.++ ++++ +.-|.+.+..+-+- ..++.+. ...-+++|+++++.|+
T Consensus 196 IsVViGeggsGGAlal~~aD~V~m~e~-a~~s-------VisPEg~a~Il~~d---~~~a~~a-A~~~~ita~dL~~~gi 263 (322)
T CHL00198 196 ICTIIGEGGSGGALGIGIGDSIMMLEY-AVYT-------VATPEACAAILWKD---SKKSLDA-AEALKITSEDLKVLGI 263 (322)
T ss_pred EEEEeCcccHHHHHhhhcCCeEEEeCC-eEEE-------ecCHHHHHHHHhcc---hhhHHHH-HHHcCCCHHHHHhCCC
Confidence 999999998888776667999999998 6554 21344445444332 2333232 2466899999999999
Q ss_pred hhhhcCC
Q 041046 184 VQAAYDS 190 (243)
Q Consensus 184 v~~v~~~ 190 (243)
||+|++.
T Consensus 264 iD~ii~E 270 (322)
T CHL00198 264 IDEIIPE 270 (322)
T ss_pred CeEeccC
Confidence 9999984
No 115
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.66 E-value=8.4e-06 Score=70.51 Aligned_cols=137 Identities=15% Similarity=0.172 Sum_probs=95.0
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046 25 RFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
.++++..+...+.++.+++-.-+ +|-+.-.++++. |.+-++ .-....+.+.+..+....+|+|
T Consensus 131 ~~~peg~rKa~R~m~lA~~f~lP--IVtlvDTpGa~~-G~~aE~--------------~G~~~aia~~l~~~a~~~VP~I 193 (319)
T PRK05724 131 MPRPEGYRKALRLMKMAEKFGLP--IITFIDTPGAYP-GIGAEE--------------RGQSEAIARNLREMARLKVPII 193 (319)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCC--EEEEEeCCCCCC-CHHHHh--------------ccHHHHHHHHHHHHhCCCCCEE
Confidence 68899999999999999876444 555554444443 332221 1123456777888889999999
Q ss_pred EEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCch
Q 041046 105 AAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV 184 (243)
Q Consensus 105 a~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv 184 (243)
++|-|.|.|||..-...||++++.++ ++++ +..|.+.+..+-+.- ..+.+..- ...++|.++++.|+|
T Consensus 194 sVIiGeg~sGGAla~~~aD~v~m~~~-A~~s-------visPEg~a~Il~~~~---~~a~~aae-~~~ita~~l~~~g~i 261 (319)
T PRK05724 194 CTVIGEGGSGGALAIGVGDRVLMLEY-STYS-------VISPEGCASILWKDA---SKAPEAAE-AMKITAQDLKELGII 261 (319)
T ss_pred EEEeCCccHHHHHHHhccCeeeeecC-ceEe-------ecCHHHHHHHHhcCc---hhHHHHHH-HcCCCHHHHHHCCCc
Confidence 99999998888876667999999988 6554 323444444444332 22333332 566899999999999
Q ss_pred hhhcCC
Q 041046 185 QAAYDS 190 (243)
Q Consensus 185 ~~v~~~ 190 (243)
|+|++.
T Consensus 262 D~II~E 267 (319)
T PRK05724 262 DEIIPE 267 (319)
T ss_pred eEeccC
Confidence 999984
No 116
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.60 E-value=1.2e-05 Score=69.54 Aligned_cols=138 Identities=17% Similarity=0.176 Sum_probs=92.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcE
Q 041046 24 HRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPT 103 (243)
Q Consensus 24 N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ 103 (243)
-.++++..+...+.++.+++-.-+ +|-+--.+++++ |.+.++. -....+.+.+..+....+|+
T Consensus 130 G~~~p~g~rKa~R~m~lA~~f~iP--vVtlvDTpGa~~-g~~aE~~--------------G~~~aia~~l~a~s~~~VP~ 192 (316)
T TIGR00513 130 GMPAPEGYRKALRLMKMAERFKMP--IITFIDTPGAYP-GIGAEER--------------GQSEAIARNLREMARLGVPV 192 (316)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCC--EEEEEECCCCCC-CHHHHHH--------------HHHHHHHHHHHHHHcCCCCE
Confidence 368899999999999999876544 444444444333 3222211 11344667777788999999
Q ss_pred EEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCc
Q 041046 104 VAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGL 183 (243)
Q Consensus 104 Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Gl 183 (243)
|++|-|.|.|||..-...||++++.++ ++++ +..|.+.+..+-+.-.....+.+ -..++|.++++.|+
T Consensus 193 IsVViGeggsGGAla~~~aD~v~m~~~-a~~s-------VisPEg~a~Il~kd~~~a~~aae----~~~~ta~~l~~~G~ 260 (316)
T TIGR00513 193 ICTVIGEGGSGGALAIGVGDKVNMLEY-STYS-------VISPEGCAAILWKDASKAPKAAE----AMKITAPDLKELGL 260 (316)
T ss_pred EEEEecccccHHHhhhccCCEEEEecC-ceEE-------ecCHHHHHHHhccchhhHHHHHH----HccCCHHHHHHCCC
Confidence 999999998888766667999999998 5554 31344444444332211222222 36778999999999
Q ss_pred hhhhcCC
Q 041046 184 VQAAYDS 190 (243)
Q Consensus 184 v~~v~~~ 190 (243)
||.|++.
T Consensus 261 iD~II~e 267 (316)
T TIGR00513 261 IDSIIPE 267 (316)
T ss_pred CeEeccC
Confidence 9999984
No 117
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.60 E-value=3.4e-07 Score=73.55 Aligned_cols=144 Identities=17% Similarity=0.234 Sum_probs=95.5
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCC-eEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHH
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFR 90 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~-~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (243)
.|.|+.| ++.++...+.+.|..+++.+..+ ..+.+.+ .|.++.. ..
T Consensus 18 ~i~l~g~-------I~~~~~~~~~~~L~~l~~~~~~~~i~i~INS------pGG~v~~--------------------g~ 64 (182)
T PF00574_consen 18 IIFLNGP-------IDEESANRLISQLLYLENEDKNKPINIYINS------PGGDVDA--------------------GL 64 (182)
T ss_dssp EEEEESS-------BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEE------CEBCHHH--------------------HH
T ss_pred EEEECCc-------cCHHHHHHHHHHHHHHhccCCCceEEEEEcC------CCCccHH--------------------HH
Confidence 4666666 89999999999988885433222 1344444 4444432 34
Q ss_pred HHHHHHhcCCCcEEEEECcccchhHHHHHHhccE--EEEecCCcceeecccccCCCCchhh-H---------------HH
Q 041046 91 PVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDY--VIMRRDKGVLYMSEVDIGATLPDYF-T---------------AL 152 (243)
Q Consensus 91 ~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~~p~~g-~---------------~~ 152 (243)
.++..|..++.|+++.+.|.|.+.|..++++||. |++.++ +.|.+-++..+. ..... . ..
T Consensus 65 ~i~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~-s~~m~H~p~~~~-~g~~~~l~~~~~~l~~~~~~~~~~ 142 (182)
T PF00574_consen 65 AIYDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPN-SRFMIHQPSTGS-GGNASELREQAKELEKLNERIANI 142 (182)
T ss_dssp HHHHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT--EEEES-CEEEE-EEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeec-CEEEeecceeec-ccccchhHHHHHHHHHHHHHHHHH
Confidence 5666777889999999999999999999999999 899998 788877776555 12110 1 11
Q ss_pred HHHHhCC-HHHHHHHHhccCCCCHHHHHHcCchhhhcCC
Q 041046 153 FRAKVGS-ATARRDVLLRAKKIKGEEALRMGLVQAAYDS 190 (243)
Q Consensus 153 l~~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
+.++.|. .....+++-...-++|+||+++||+|+|+.+
T Consensus 143 ~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 143 YAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp HHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred HHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 1112221 2333444444555899999999999999864
No 118
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.55 E-value=2e-05 Score=69.99 Aligned_cols=137 Identities=19% Similarity=0.261 Sum_probs=91.7
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046 25 RFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
.++++.++...+.++.++...-+ +|-+.-.++++ .|.+.++ .-....+.+.+..+....+|+|
T Consensus 201 ~~~peGyRKAlR~mklAekf~lP--IVtLVDTpGA~-pG~~AEe--------------~Gqa~aIAr~l~ams~l~VPiI 263 (431)
T PLN03230 201 MPQPNGYRKALRFMRHAEKFGFP--ILTFVDTPGAY-AGIKAEE--------------LGQGEAIAFNLREMFGLRVPII 263 (431)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCC--EEEEEeCCCcC-CCHHHHH--------------HhHHHHHHHHHHHHhcCCCCEE
Confidence 68899999999999999876544 44444433333 2222221 1123446677778889999999
Q ss_pred EEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCch
Q 041046 105 AAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV 184 (243)
Q Consensus 105 a~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv 184 (243)
++|-|.+.+||.....+||+++|.++ ++++ +.-|.+.+..+-+--.....+.+ ...++|+++++.|+|
T Consensus 264 SVViGeGgSGGAlalg~aD~VlMle~-A~ys-------VisPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiI 331 (431)
T PLN03230 264 ATVIGEGGSGGALAIGCGNRMLMMEN-AVYY-------VASPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVV 331 (431)
T ss_pred EEEeCCCCcHHHHHhhcCCEEEEecC-CEEE-------ecCHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCC
Confidence 99999997777666668999999998 5554 31244444444332221222323 448999999999999
Q ss_pred hhhcCC
Q 041046 185 QAAYDS 190 (243)
Q Consensus 185 ~~v~~~ 190 (243)
|.|++.
T Consensus 332 D~II~E 337 (431)
T PLN03230 332 DEIVPE 337 (431)
T ss_pred eEeccC
Confidence 999974
No 119
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.52 E-value=2.4e-05 Score=73.72 Aligned_cols=137 Identities=16% Similarity=0.191 Sum_probs=94.5
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046 25 RFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
+.+++.++...+.++.++...-+ +|-+--.++++. |...+.. -....+.+.+..+....+|+|
T Consensus 222 ~~~peGyRKAlRlmkLAekfgLP--IVtLVDTpGA~p-G~~AEe~--------------Gq~~aIArnl~amasl~VP~I 284 (762)
T PLN03229 222 MPTPHGYRKALRMMYYADHHGFP--IVTFIDTPGAYA-DLKSEEL--------------GQGEAIAHNLRTMFGLKVPIV 284 (762)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCC--EEEEEECCCcCC-CchhHHH--------------hHHHHHHHHHHHHhCCCCCEE
Confidence 67888899999999999876554 444443333333 3222221 113446677778889999999
Q ss_pred EEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCch
Q 041046 105 AAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV 184 (243)
Q Consensus 105 a~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv 184 (243)
++|-|.|.|||......||+++|.++ ++++ +.-|.+.+..+-+--. ++.+ +...-.++|++.++.|+|
T Consensus 285 SVViGeggSGGAlA~g~aD~VlMle~-A~~s-------VisPEgaAsILwkd~~---~A~e-AAe~lkiTa~dL~~lGii 352 (762)
T PLN03229 285 SIVIGEGGSGGALAIGCANKLLMLEN-AVFY-------VASPEACAAILWKSAK---AAPK-AAEKLRITAQELCRLQIA 352 (762)
T ss_pred EEEeCCcchHHHHHhhcCCEEEEecC-CeEE-------ecCHHHHHHHHhcCcc---cHHH-HHHHcCCCHHHHHhCCCC
Confidence 99999999998888888999999998 5443 2134444544433322 2222 224668999999999999
Q ss_pred hhhcCC
Q 041046 185 QAAYDS 190 (243)
Q Consensus 185 ~~v~~~ 190 (243)
|+|+|.
T Consensus 353 D~IIpE 358 (762)
T PLN03229 353 DGIIPE 358 (762)
T ss_pred eeeccC
Confidence 999984
No 120
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.44 E-value=7.1e-06 Score=66.83 Aligned_cols=138 Identities=10% Similarity=0.012 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCC-eEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046 26 FGPSAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~d~~i~-~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
++.++.+++...|-.++.++..+ ..+.+.+.| .++.. ...++..+...+.|+.
T Consensus 39 i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG------G~v~~--------------------g~aIyd~m~~~~~~V~ 92 (200)
T CHL00028 39 VDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG------GSVIS--------------------GLAIYDTMQFVKPDVH 92 (200)
T ss_pred ecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC------cchhh--------------------HHHHHHHHHhcCCCEE
Confidence 89999999999999998543323 234454444 33221 2446667778899999
Q ss_pred EEECcccchhHHHHHHhcc--EEEEecCCcceeecccccCCCCchhh-H---------------HHHHHHhCC-HHHHHH
Q 041046 105 AAVNGHAAAAGFTLALSHD--YVIMRRDKGVLYMSEVDIGATLPDYF-T---------------ALFRAKVGS-ATARRD 165 (243)
Q Consensus 105 a~v~G~a~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~~p~~g-~---------------~~l~~~~g~-~~~a~~ 165 (243)
..+-|.|.+.|.-+++++| .|++.++ +.|-+-....|....... . ..+.++-|. .....+
T Consensus 93 Tv~~G~AaS~aslIl~aG~kg~R~~~p~-s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~ 171 (200)
T CHL00028 93 TICLGLAASMASFILAGGEITKRLAFPH-ARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISE 171 (200)
T ss_pred EEEEEehHHHHHHHHhCCCCCCEEecCC-CeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 9999999999999999999 6999988 677665554441111110 0 011112221 223344
Q ss_pred HHhccCCCCHHHHHHcCchhhhcCC
Q 041046 166 VLLRAKKIKGEEALRMGLVQAAYDS 190 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
++-...-++|+||+++||||+|+.+
T Consensus 172 ~~~r~~~lta~EA~eyGliD~I~~~ 196 (200)
T CHL00028 172 DMERDVFMSATEAKAYGIVDLVAVN 196 (200)
T ss_pred HhhcCccCCHHHHHHcCCCcEEeec
Confidence 4555566999999999999999976
No 121
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=98.44 E-value=7.9e-06 Score=66.19 Aligned_cols=137 Identities=18% Similarity=0.113 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCe-EEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046 26 FGPSAIDSILSAIAKAKAEATPGS-ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~d~~i~~-vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
++..+..++...|..++.++..+- .+.+.+. |.++.. ...++..+...+.|+.
T Consensus 35 I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSp------GG~v~~--------------------g~~I~d~l~~~~~~v~ 88 (191)
T TIGR00493 35 VNDSVANLIVAQLLFLEAEDPEKDIYLYINSP------GGSITA--------------------GLAIYDTMQFIKPDVS 88 (191)
T ss_pred EChHHHHHHHHHHHHhhccCCCCCEEEEEECC------CCCHHH--------------------HHHHHHHHHhcCCCEE
Confidence 788888999999999886554331 2333333 344332 2334445666677787
Q ss_pred EEECcccchhHHHHHHhcc--EEEEecCCcceeecccccCCC--Cchhh--H-----------HHHHHHhC-CHHHHHHH
Q 041046 105 AAVNGHAAAAGFTLALSHD--YVIMRRDKGVLYMSEVDIGAT--LPDYF--T-----------ALFRAKVG-SATARRDV 166 (243)
Q Consensus 105 a~v~G~a~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~--~p~~g--~-----------~~l~~~~g-~~~~a~~l 166 (243)
..+.|.|.+.|.-+++++| .|++.++ +.|.+-+..-|.. ..+.- + ..+.++-| ......++
T Consensus 89 t~~~G~AaSaaslI~~aG~~~~r~~~p~-s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~ 167 (191)
T TIGR00493 89 TICIGQAASMGAFLLSAGAKGKRFSLPN-SRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKD 167 (191)
T ss_pred EEEEEeeccHHHHHHhcCCCCcEEecCC-ceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 7788999999998888765 6999888 7777655432320 11110 0 11223333 13445566
Q ss_pred HhccCCCCHHHHHHcCchhhhcC
Q 041046 167 LLRAKKIKGEEALRMGLVQAAYD 189 (243)
Q Consensus 167 ~l~g~~~~a~eA~~~Glv~~v~~ 189 (243)
+-.+..++|+||+++||+|+|+.
T Consensus 168 ~~~~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 168 TERDFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred hhCCccCcHHHHHHcCCccEEec
Confidence 66677899999999999999874
No 122
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.1e-05 Score=70.12 Aligned_cols=158 Identities=19% Similarity=0.303 Sum_probs=112.8
Q ss_pred eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHH
Q 041046 7 HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMV 86 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~ 86 (243)
++.|+++.++.. +++.+.+.+.+.++.++++..-. +|+.-..++. ..
T Consensus 25 ~~~v~vi~i~g~-------I~~~s~~~l~r~l~~A~~~~a~~-vvl~ldTPGG-------------------------l~ 71 (436)
T COG1030 25 EKKVYVIEIDGA-------IDPASADYLQRALQSAEEENAAA-VVLELDTPGG-------------------------LL 71 (436)
T ss_pred CCeEEEEEecCc-------cCHHHHHHHHHHHHHHHhCCCcE-EEEEecCCCc-------------------------hH
Confidence 457889999866 99999999999999999876432 3333222211 12
Q ss_pred HhHHHHHHHHhcCCCcEEEEEC---cccchhHHHHHHhccEEEEecCCcceeecccccCC--CCchhh-HH-------HH
Q 041046 87 ESFRPVVAAMMDLPMPTVAAVN---GHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGA--TLPDYF-TA-------LF 153 (243)
Q Consensus 87 ~~~~~~~~~l~~~~kp~Ia~v~---G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl--~~p~~g-~~-------~l 153 (243)
+.+.++++++.+.|.|+++.+. ++|..+|..++++||+.+|.+. +.++-...-.+- ..+... .. -+
T Consensus 72 ~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPg-T~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~ 150 (436)
T COG1030 72 DSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPG-TNIGAATPIAGGGTSAKEANTTNAAVAYIRSL 150 (436)
T ss_pred HHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCC-CcccccceecCCCCCccchhhHHHHHHHHHHH
Confidence 3478899999999999888874 4799999999999999999987 667643332221 011111 11 12
Q ss_pred HHHhC-CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHH
Q 041046 154 RAKVG-SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEAS 198 (243)
Q Consensus 154 ~~~~g-~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a 198 (243)
.+.-| +...|.+++.....++++||++.|++|-+..+..|+....
T Consensus 151 A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell~~~ 196 (436)
T COG1030 151 AEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARDLNELLKKL 196 (436)
T ss_pred HHHcCCChHHHHHHhhhccCCChhHHHhcCccccccCCHHHHHHHc
Confidence 22222 3667888999999999999999999999998866555443
No 123
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=98.29 E-value=2.5e-07 Score=72.43 Aligned_cols=103 Identities=18% Similarity=0.230 Sum_probs=61.7
Q ss_pred hcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccc------------cCCC-------------Cch----
Q 041046 97 MDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVD------------IGAT-------------LPD---- 147 (243)
Q Consensus 97 ~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~------------~Gl~-------------~p~---- 147 (243)
....||++|.+.|.+..+++.++.+||-+++.+. +.++...+. +|+. +|.
T Consensus 3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~-s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s 81 (154)
T PF01343_consen 3 KASGKPVVAYAEGYAASGAYYLASAADEIYANPS-SSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS 81 (154)
T ss_dssp HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT--EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred cccCCeEEEEECCcchhHHHHHHHcCCEEEecCC-CEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence 4679999999999999999999999999999876 555532111 1110 010
Q ss_pred -hhHHHHHHH-----------h----CCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHH
Q 041046 148 -YFTALFRAK-----------V----GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRL 201 (243)
Q Consensus 148 -~g~~~l~~~-----------~----g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~ 201 (243)
-.-..+.+. + |......+-+..|..+++++|++.||||++... +++.+.+.+.
T Consensus 82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~-~~~~~~l~~~ 150 (154)
T PF01343_consen 82 EEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTF-DEAIARLAKL 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCH-HHHHHHHHHH
Confidence 011111111 1 101111233568899999999999999999865 6665555443
No 124
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.21 E-value=7.8e-05 Score=60.53 Aligned_cols=137 Identities=15% Similarity=0.066 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCC-eEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046 26 FGPSAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~d~~i~-~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
++.+...++...|..++.++..+ ..+.+.+.| .++.. ...++..+...+.||.
T Consensus 34 i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG------G~v~~--------------------g~aIyd~m~~~~~~V~ 87 (196)
T PRK12551 34 VTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG------GSVYD--------------------GLGIFDTMQHVKPDVH 87 (196)
T ss_pred ecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC------cchhh--------------------HHHHHHHHHhcCCCEE
Confidence 88999999999999998543222 134444443 33322 2345566777888999
Q ss_pred EEECcccchhHHHHHHhccE--EEEecCCcceeecccccCCCCchhh-HH---------------HHHHHhCC-HHHHHH
Q 041046 105 AAVNGHAAAAGFTLALSHDY--VIMRRDKGVLYMSEVDIGATLPDYF-TA---------------LFRAKVGS-ATARRD 165 (243)
Q Consensus 105 a~v~G~a~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~~p~~g-~~---------------~l~~~~g~-~~~a~~ 165 (243)
..+-|.|.+.|.-+++++|. |++.++ +.+-+-...-|. ..... .. .+.++-|. .....+
T Consensus 88 t~~~G~AaS~AslIl~aG~~~~R~~~p~-a~iMIHqP~~~~-~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~ 165 (196)
T PRK12551 88 TVCVGLAASMGAFLLCAGAKGKRSSLQH-SRIMIHQPLGGA-RGQASDIRIQADEILFLKERLNTELSERTGQPLERIQE 165 (196)
T ss_pred EEEEEEehhHHHHHHhCCCCCceecCCC-CEEEEecCCccc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999999985 888887 666554443222 11110 10 11122231 223344
Q ss_pred HHhccCCCCHHHHHHcCchhhhcCC
Q 041046 166 VLLRAKKIKGEEALRMGLVQAAYDS 190 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
++-...-++|+||+++||+|+|+++
T Consensus 166 ~~~rd~~msa~EA~eyGliD~I~~~ 190 (196)
T PRK12551 166 DTDRDFFMSPSEAVEYGLIDLVIDK 190 (196)
T ss_pred HhhcCcCCCHHHHHHcCCCcEEecc
Confidence 4445566999999999999999976
No 125
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.20 E-value=4.9e-05 Score=62.69 Aligned_cols=137 Identities=11% Similarity=0.009 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCC-eEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046 26 FGPSAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~d~~i~-~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
++..+.+++...|..++..+.-+ ..+.+.+.|+ ++.. ...++..+...+.||.
T Consensus 63 Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGG------sv~a--------------------GlaIyd~m~~~~~~V~ 116 (221)
T PRK14514 63 IDDYTANTIQAQLLYLDSVDPGKDISIYINSPGG------SVYA--------------------GLGIYDTMQFISSDVA 116 (221)
T ss_pred EcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCc------chhh--------------------HHHHHHHHHhcCCCEE
Confidence 78888899998887777432111 1345544443 2221 2345567778899999
Q ss_pred EEECcccchhHHHHHHhccE--EEEecCCcceeecccccCCCCchhh-H----HH-----------HHHHhCC-HHHHHH
Q 041046 105 AAVNGHAAAAGFTLALSHDY--VIMRRDKGVLYMSEVDIGATLPDYF-T----AL-----------FRAKVGS-ATARRD 165 (243)
Q Consensus 105 a~v~G~a~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~~p~~g-~----~~-----------l~~~~g~-~~~a~~ 165 (243)
..+-|.|.+.|.-+++++|. |++.++ +.+-+-...-|. ..... . .. +.+.-|. .....+
T Consensus 117 tv~~G~AAS~AslIl~aG~~gkR~~~pn-a~iMiHqP~~~~-~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~ 194 (221)
T PRK14514 117 TICTGMAASMASVLLVAGTKGKRSALPH-SRVMIHQPLGGA-QGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWA 194 (221)
T ss_pred EEEEEEehhHHHHHHhcCCCCceeeCCC-CEEEeccCCccc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999999996 889888 666554443332 11111 0 01 1112231 223344
Q ss_pred HHhccCCCCHHHHHHcCchhhhcCC
Q 041046 166 VLLRAKKIKGEEALRMGLVQAAYDS 190 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
.+-...-++|+||+++||+|+|+.+
T Consensus 195 ~~~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 195 DSDRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred HhhcCccCCHHHHHHcCCccEEeec
Confidence 4555566999999999999999864
No 126
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=98.19 E-value=2.4e-05 Score=73.68 Aligned_cols=84 Identities=18% Similarity=0.186 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEECc
Q 041046 30 AIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNG 109 (243)
Q Consensus 30 ~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G 109 (243)
.+.++.+.|+++.+|+.|+ .||+.-.. +.|..+..+. .+.+.+..+....|||||..++
T Consensus 77 ~l~~i~~~i~~A~~D~~Ik-gIvL~i~~---~~g~~~~~~~-----------------ei~~ai~~fk~sgKpVvA~~~~ 135 (584)
T TIGR00705 77 SLFDIVNAIRQAADDRRIE-GLVFDLSN---FSGWDSPHLV-----------------EIGSALSEFKDSGKPVYAYGTN 135 (584)
T ss_pred CHHHHHHHHHHHhcCCCce-EEEEEccC---CCCCCHHHHH-----------------HHHHHHHHHHhcCCeEEEEEcc
Confidence 5789999999999999999 78887542 1233333222 2344444555679999998877
Q ss_pred ccchhHHHHHHhccEEEEecCCcceee
Q 041046 110 HAAAAGFTLALSHDYVIMRRDKGVLYM 136 (243)
Q Consensus 110 ~a~G~G~~la~~~D~~ia~~~~~~f~~ 136 (243)
.+ -+|+.++.+||-+++.+. +.+++
T Consensus 136 ~~-s~~YylAs~AD~I~~~p~-G~v~~ 160 (584)
T TIGR00705 136 YS-QGQYYLASFADEIILNPM-GSVDL 160 (584)
T ss_pred cc-chhhhhhhhCCEEEECCC-ceEEe
Confidence 65 678999999999999887 55543
No 127
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=98.19 E-value=0.0004 Score=59.13 Aligned_cols=140 Identities=17% Similarity=0.192 Sum_probs=84.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHh----CCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhc
Q 041046 23 EHRFGPSAIDSILSAIAKAKA----EATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMD 98 (243)
Q Consensus 23 ~N~~~~~~~~~l~~~l~~~~~----d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 98 (243)
.-++....-+.+..+++.+.+ ...+- +|++...|+ .-+.+-.. ....+.+ +...+..+..
T Consensus 72 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~P-vV~l~dSgG-----aRlqEg~~---------~L~~~a~-i~~~~~~ls~ 135 (274)
T TIGR03133 72 GGSVGEVHGAKIVGALRLAIEDNRKGQPTA-VVLLLDTGG-----VRLQEANA---------GLIAIAE-IMRAILDARA 135 (274)
T ss_pred CcCCCHHHHHHHHHHHHHHHhhhhccCCCC-EEEEEcCCC-----cChhhhHH---------HHHHHHH-HHHHHHHHhC
Confidence 457888888999999999986 11223 455544333 33332111 1111111 1222233344
Q ss_pred CCCcEEEEECcc--cchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCH--HHHHHHHhccCCCC
Q 041046 99 LPMPTVAAVNGH--AAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSA--TARRDVLLRAKKIK 174 (243)
Q Consensus 99 ~~kp~Ia~v~G~--a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~--~~a~~l~l~g~~~~ 174 (243)
. .|+|+++.|+ |.||+..++.+||++|++++ ++++ +. |...+....| . -...+--+..+.+.
T Consensus 136 ~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~-a~i~-------~a----GP~VIe~~~G-~e~~~~~d~~l~~~~lG 201 (274)
T TIGR03133 136 A-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEE-GRLG-------LS----GPEVIEQEAG-VEEFDSRDRALVWRTTG 201 (274)
T ss_pred C-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCC-cEEe-------cc----CHHHHHHhcC-CCccCHHHhcccccccc
Confidence 4 9999999999 89999999999999999987 6554 31 1122222233 1 11223333445566
Q ss_pred HHHHHHcCchhhhcCChH
Q 041046 175 GEEALRMGLVQAAYDSEE 192 (243)
Q Consensus 175 a~eA~~~Glv~~v~~~~~ 192 (243)
+......|++|.++++..
T Consensus 202 G~~~~~sG~~D~~v~dd~ 219 (274)
T TIGR03133 202 GKHRFLSGDADVLVEDDV 219 (274)
T ss_pred hHhHhhcccceEEeCCHH
Confidence 667888999999999733
No 128
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=98.19 E-value=5.1e-05 Score=63.79 Aligned_cols=96 Identities=23% Similarity=0.231 Sum_probs=75.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcE
Q 041046 24 HRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPT 103 (243)
Q Consensus 24 N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ 103 (243)
+-++.+..+++.++++...++..+ .+++... |+++.. -.++.+.+.+.+.++
T Consensus 70 ~~I~i~dse~v~raI~~~~~~~~I--dLii~Tp------GG~v~A--------------------A~~I~~~l~~~~~~v 121 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPKDKPI--DLIIHTP------GGLVDA--------------------AEQIARALREHPAKV 121 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCCCCce--EEEEECC------CCcHHH--------------------HHHHHHHHHhCCCCE
Confidence 458888999999999998877654 4555433 333322 244566777899999
Q ss_pred EEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh
Q 041046 104 VAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF 149 (243)
Q Consensus 104 Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g 149 (243)
.+.|+..|..+|..++++||-+++.+. +.+|--+.++|- .|..+
T Consensus 122 ~v~VP~~A~SAGTlIALaADeIvM~p~-a~LGpiDPqi~~-~pA~s 165 (285)
T PF01972_consen 122 TVIVPHYAMSAGTLIALAADEIVMGPG-AVLGPIDPQIGQ-YPAAS 165 (285)
T ss_pred EEEECcccccHHHHHHHhCCeEEECCC-CccCCCCccccC-CChHH
Confidence 999999999999999999999999988 889999999987 67654
No 129
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=98.14 E-value=0.00047 Score=59.32 Aligned_cols=165 Identities=14% Similarity=0.172 Sum_probs=102.0
Q ss_pred eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHH
Q 041046 7 HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMV 86 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~ 86 (243)
+|.-..|.-|.+. ...-+++....+.+.++++.+.+..- - +|.+...|+ +.+.+-. .....+
T Consensus 119 ~G~~V~v~a~D~~-f~gGS~g~~~~eKi~r~~e~A~~~~l-P-lV~l~dsgG-----armqEgi---------~sL~~~- 180 (292)
T PRK05654 119 EGMPVVLAVMDFS-FMGGSMGSVVGEKIVRAVERAIEEKC-P-LVIFSASGG-----ARMQEGL---------LSLMQM- 180 (292)
T ss_pred CCEEEEEEEEecc-cccCCccHHHHHHHHHHHHHHHHcCC-C-EEEEEcCCC-----cchhhhh---------hHHHhH-
Confidence 3433334444442 13468999999999999999998754 4 566665443 2222200 001111
Q ss_pred HhHHHHHHHHhcCCCcEEEEECcccchhHH-HHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHH
Q 041046 87 ESFRPVVAAMMDLPMPTVAAVNGHAAAAGF-TLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165 (243)
Q Consensus 87 ~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~-~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~ 165 (243)
......+.++.....|.|+++.|+|.||+. .+++.+|++|+.++ +.+++. -| ..+...++ ...
T Consensus 181 ak~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~-A~ig~a-------Gp----rvie~~~~-e~l--- 244 (292)
T PRK05654 181 AKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPK-ALIGFA-------GP----RVIEQTVR-EKL--- 244 (292)
T ss_pred HHHHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecC-cEEEec-------CH----HHHHhhhh-hhh---
Confidence 122334444566789999999999999965 56778999999776 555431 12 12222222 111
Q ss_pred HHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCC
Q 041046 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRK 209 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~ 209 (243)
.-+-=+++-+.+.|+||.|+++ .++.+...++.+.+...+
T Consensus 245 ---pe~~~~ae~~~~~G~vD~Vv~~-~e~r~~l~~~L~~~~~~~ 284 (292)
T PRK05654 245 ---PEGFQRAEFLLEHGAIDMIVHR-RELRDTLASLLALHTKQP 284 (292)
T ss_pred ---hhhhcCHHHHHhCCCCcEEECH-HHHHHHHHHHHHHHhcCC
Confidence 1112256777899999999998 788888888888776554
No 130
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=98.12 E-value=0.00046 Score=57.65 Aligned_cols=141 Identities=14% Similarity=0.139 Sum_probs=86.1
Q ss_pred CCCHHHHHHHHHHHHHH-HhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHh---cCC
Q 041046 25 RFGPSAIDSILSAIAKA-KAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMM---DLP 100 (243)
Q Consensus 25 ~~~~~~~~~l~~~l~~~-~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~ 100 (243)
.++.+-.....+.+..+ +.+..+- +|.+--.++ |-.|..-+ ..-....+.+++..+. ..+
T Consensus 44 ~~g~~~~~k~A~~v~~~~d~~f~~P-Iv~lvDtpG-~~~g~~aE--------------~~G~~~a~A~l~~a~a~a~~~~ 107 (238)
T TIGR03134 44 EVGLDEALALAQAVLDVIEADDKRP-IVVLVDTPS-QAYGRREE--------------LLGINQALAHLAKALALARLAG 107 (238)
T ss_pred cCChHHHHHHHHHHHHHHHhcCCCC-EEEEEeCCC-CCCCHHHH--------------HHHHHHHHHHHHHHHHHhhcCC
Confidence 68888888888888885 4456666 566654433 22222222 1222333444444444 556
Q ss_pred CcEEEEECcccchhHHH-HHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhc--cCCCCHHH
Q 041046 101 MPTVAAVNGHAAAAGFT-LALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLR--AKKIKGEE 177 (243)
Q Consensus 101 kp~Ia~v~G~a~G~G~~-la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~--g~~~~a~e 177 (243)
.|+|++|-|.++|||+. +.+.+|.++|-++ +.+ +. ++.-+...+..+= ...+.++.-. -...++..
T Consensus 108 vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~-A~i-------~v-m~~e~aa~I~~~~--~~~~~e~a~~~~~~a~~~~~ 176 (238)
T TIGR03134 108 HPVIGLIYGKAISGAFLAHGLQADRIIALPG-AMV-------HV-MDLESMARVTKRS--VEELEALAKSSPVFAPGIEN 176 (238)
T ss_pred CCEEEEEeCCccHHHHHHHccCcCeEEEcCC-cEE-------Ee-cCHHHHHHHHccC--HhHHHHHHHhhhhhccCHHH
Confidence 99999999999999875 4445888888877 544 44 4444444333321 1222333322 23467888
Q ss_pred HHHcCchhhhcCChH
Q 041046 178 ALRMGLVQAAYDSEE 192 (243)
Q Consensus 178 A~~~Glv~~v~~~~~ 192 (243)
+.+.|+||.|++..+
T Consensus 177 ~~~~G~vd~vi~~~~ 191 (238)
T TIGR03134 177 FVKLGGVHALLDVAD 191 (238)
T ss_pred HHhCCCccEEeCCCC
Confidence 999999999998633
No 131
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=98.10 E-value=0.00058 Score=58.82 Aligned_cols=144 Identities=19% Similarity=0.232 Sum_probs=82.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCC----CCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHh
Q 041046 22 DEHRFGPSAIDSILSAIAKAKAEA----TPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMM 97 (243)
Q Consensus 22 ~~N~~~~~~~~~l~~~l~~~~~d~----~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 97 (243)
..-++.......+..+++.+.++. -+- +|++...|+ .-+.+-.. ....+.+ +...+..+.
T Consensus 80 ~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~P-vV~l~dSGG-----aRlqEg~~---------~L~~~a~-i~~~~~~ls 143 (301)
T PRK07189 80 MGGSVGEVHGAKLAGALELAAEDNRNGIPTA-VLLLFETGG-----VRLQEANA---------GLAAIAE-IMRAIVDLR 143 (301)
T ss_pred cCcCcCHHHHHHHHHHHHHHHHhCCCCCCCC-EEEEecCCC-----cCccchHH---------HHHHHHH-HHHHHHHHh
Confidence 345888999999999999998765 133 555544333 23322110 0111111 222223334
Q ss_pred cCCCcEEEEECcc--cchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCC-HHHHHHHHhccCCCC
Q 041046 98 DLPMPTVAAVNGH--AAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGS-ATARRDVLLRAKKIK 174 (243)
Q Consensus 98 ~~~kp~Ia~v~G~--a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~-~~~a~~l~l~g~~~~ 174 (243)
.. .|+|+++.|+ |.||+...+.+||++|++++ +.++ +.-|. .+....|. .-...+.-+..+.+-
T Consensus 144 ~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~-a~ig-------laGP~----VIe~~~G~e~~d~~d~~~vw~~lG 210 (301)
T PRK07189 144 AA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEE-GRLG-------LSGPE----VIEQEAGVEEFDSRDRALVWRTTG 210 (301)
T ss_pred CC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECC-cEEe-------ccCHH----HHHHhcCCcccCHHHhcccccccC
Confidence 44 9999999999 99999999999999999987 6544 31121 11111220 011122122122222
Q ss_pred HHHHHHcCchhhhcCChHHH
Q 041046 175 GEEALRMGLVQAAYDSEEQV 194 (243)
Q Consensus 175 a~eA~~~Glv~~v~~~~~~l 194 (243)
+......|.+|.++++..+.
T Consensus 211 G~h~~~sG~~D~~v~dd~~a 230 (301)
T PRK07189 211 GKHRYLSGLADALVDDDVAA 230 (301)
T ss_pred cceeeecccceEEeCCHHHH
Confidence 33455689999999984443
No 132
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.06 E-value=0.00066 Score=58.22 Aligned_cols=148 Identities=15% Similarity=0.186 Sum_probs=95.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCc
Q 041046 23 EHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMP 102 (243)
Q Consensus 23 ~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 102 (243)
.-+++....+.+.++++.+.+..- - +|.+...|+. -+.+-. .....+ ......+.++.....|
T Consensus 133 gGSmg~~~geKi~r~~e~A~~~~l-P-lV~l~dSgGa-----RmqEg~---------~sL~~~-ak~~~~~~~~~~~~vP 195 (285)
T TIGR00515 133 GGSMGSVVGEKFVRAIEKALEDNC-P-LIIFSASGGA-----RMQEAL---------LSLMQM-AKTSAALAKMSERGLP 195 (285)
T ss_pred CCCccHHHHHHHHHHHHHHHHcCC-C-EEEEEcCCCc-----ccccch---------hHHHhH-HHHHHHHHHHHcCCCC
Confidence 458999999999999999987644 4 6666655543 222110 011111 1122344455667899
Q ss_pred EEEEECcccchhHH-HHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCC-CHHHHHH
Q 041046 103 TVAAVNGHAAAAGF-TLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKI-KGEEALR 180 (243)
Q Consensus 103 ~Ia~v~G~a~G~G~-~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~-~a~eA~~ 180 (243)
.|+++.|+|.||+. .+++.+|+++|.++ +.+++. -|. .+...+| ... . +.+ +|+-+.+
T Consensus 196 ~IsVv~gpt~GG~aas~a~~~D~iia~p~-A~ig~a-------Gpr----Vie~ti~-e~l------p-e~~q~ae~~~~ 255 (285)
T TIGR00515 196 YISVLTDPTTGGVSASFAMLGDLNIAEPK-ALIGFA-------GPR----VIEQTVR-EKL------P-EGFQTSEFLLE 255 (285)
T ss_pred EEEEEeCCcchHHHHHHHhCCCEEEEECC-eEEEcC-------CHH----HHHHHhc-Ccc------c-hhcCCHHHHHh
Confidence 99999999999965 56789999999887 655431 121 2222233 111 1 223 5666788
Q ss_pred cCchhhhcCChHHHHHHHHHHHHHHhcC
Q 041046 181 MGLVQAAYDSEEQVAEASMRLAKQMAGR 208 (243)
Q Consensus 181 ~Glv~~v~~~~~~l~~~a~~~a~~la~~ 208 (243)
.|+||.|+++ .++.+...++.+.+...
T Consensus 256 ~G~vD~iv~~-~~~r~~l~~~L~~~~~~ 282 (285)
T TIGR00515 256 HGAIDMIVHR-PEMKKTLASLLAKLQNL 282 (285)
T ss_pred CCCCcEEECc-HHHHHHHHHHHHHHhhC
Confidence 9999999999 78888887777665443
No 133
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.04 E-value=0.0002 Score=58.31 Aligned_cols=138 Identities=13% Similarity=0.153 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCC-eEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046 26 FGPSAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~d~~i~-~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
++.++...+...|-.++..+.-+ ..+.+.+.| .|+.. ...++..|...+.||.
T Consensus 36 i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG------G~v~~--------------------GlaIyd~m~~~~~~V~ 89 (201)
T PRK14513 36 IESQMANTIVAQLLLLDSQNPEQEIQMYINCPG------GEVYA--------------------GLAIYDTMRYIKAPVS 89 (201)
T ss_pred EcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------Cchhh--------------------HHHHHHHHHhcCCCEE
Confidence 88889999988888888533211 135554444 33322 2446667778889999
Q ss_pred EEECcccchhHHHHHHhccE--EEEecCCcceeecccccCCC--Cchhh--HH-----------HHHHHhCC-HHHHHHH
Q 041046 105 AAVNGHAAAAGFTLALSHDY--VIMRRDKGVLYMSEVDIGAT--LPDYF--TA-----------LFRAKVGS-ATARRDV 166 (243)
Q Consensus 105 a~v~G~a~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~--~p~~g--~~-----------~l~~~~g~-~~~a~~l 166 (243)
..+.|.|.+.|.-+++++|- |++.++ +.+-+-....|.. .++.- +. .+.++-|. .....++
T Consensus 90 Ti~~G~AaS~As~il~aG~kgkR~~~pn-a~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~ 168 (201)
T PRK14513 90 TICVGIAMSMGSVLLMAGDKGKRMALPN-SRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRD 168 (201)
T ss_pred EEEEeeehhhHHHHHhcCCCCcEEecCC-eEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999995 899888 6665544443330 01110 00 01112221 2233444
Q ss_pred HhccCCCCHHHHHHcCchhhhcCC
Q 041046 167 LLRAKKIKGEEALRMGLVQAAYDS 190 (243)
Q Consensus 167 ~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
+-...-++|+||+++||+|+|+.+
T Consensus 169 ~~rd~~msa~EA~eyGliD~I~~~ 192 (201)
T PRK14513 169 MERDYFMSPEEAKAYGLIDSVIEP 192 (201)
T ss_pred hccCcccCHHHHHHcCCCcEEecc
Confidence 444556999999999999999975
No 134
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.98 E-value=0.001 Score=61.73 Aligned_cols=175 Identities=13% Similarity=0.107 Sum_probs=108.1
Q ss_pred eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHH
Q 041046 7 HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMV 86 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~ 86 (243)
+|.-.-|.-|+|. ...-++++...+...+.++.+.+..- - +|.+...++ |..|.+-+ .....
T Consensus 313 ~G~~V~vvAnd~~-~~~G~~~~~~~~K~~r~i~~a~~~~l-P-lV~lvDs~G-~~~g~~~E--------------~~g~~ 374 (512)
T TIGR01117 313 NGQSVGIIANQPK-VMAGCLDIDSSDKIARFIRFCDAFNI-P-IVTFVDVPG-FLPGVNQE--------------YGGII 374 (512)
T ss_pred CCEEEEEEEeccc-cccCCCCHHHHHHHHHHHHHHHHcCC-C-EEEEEeCcC-ccccHHHH--------------HHHHH
Confidence 3433334445552 12347999999999999999987544 4 555554444 44443222 12234
Q ss_pred HhHHHHHHHHhcCCCcEEEEECcccchhHHHHHH----hccEEEEecCCcceeecccccCCCCchhhHHHHH-HHhC---
Q 041046 87 ESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLAL----SHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFR-AKVG--- 158 (243)
Q Consensus 87 ~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~----~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~-~~~g--- 158 (243)
....+++.++....+|.|++|-|.+.|+|+.-.. .+|++++.++ +.+ |+.-|...+..+- +.+.
T Consensus 375 ~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~-a~~-------~v~~pe~a~~i~~~~~l~~~~ 446 (512)
T TIGR01117 375 RHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPT-AEI-------AVMGPAGAANIIFRKDIKEAK 446 (512)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCC-CeE-------eecCHHHHHHHHhhhhccccc
Confidence 4566777888889999999999999988665443 3899999887 544 4422444343332 2221
Q ss_pred CHHHHHH--HH-hccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcC
Q 041046 159 SATARRD--VL-LRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208 (243)
Q Consensus 159 ~~~~a~~--l~-l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~ 208 (243)
....++. +. ..-+.-++..+.+.|+||.|+++ .+......+..+.+..+
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~a~~g~vD~VI~P-~~tR~~l~~~l~~~~~~ 498 (512)
T TIGR01117 447 DPAATRKQKIAEYREEFANPYKAAARGYVDDVIEP-KQTRPKIVNALAMLESK 498 (512)
T ss_pred CHHHHHHHHHHHHHHhhcCHHHHHhcCCCCeeECh-HHHHHHHHHHHHHHhcC
Confidence 0111111 11 11234578999999999999998 77777777666655443
No 135
>PRK10949 protease 4; Provisional
Probab=97.95 E-value=0.00027 Score=66.90 Aligned_cols=83 Identities=16% Similarity=0.196 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEECc
Q 041046 30 AIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNG 109 (243)
Q Consensus 30 ~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G 109 (243)
.+.++.++|+++.+|+.|+ .||+.-.+. . |..+..+ +.+.+.+..+....||+||. ..
T Consensus 96 ~l~div~~i~~Aa~D~rIk-givL~i~s~--g-G~~~a~~-----------------~eI~~ai~~fk~sGKpVvA~-~~ 153 (618)
T PRK10949 96 SLFDIVNTIRQAKDDRNIT-GIVLDLKNF--A-GADQPSM-----------------QYIGKALREFRDSGKPVYAV-GD 153 (618)
T ss_pred cHHHHHHHHHHHhcCCCce-EEEEEeCCC--C-CccHHHH-----------------HHHHHHHHHHHHhCCeEEEE-ec
Confidence 4568999999999999999 788876421 1 2222111 12344445555678999985 44
Q ss_pred ccchhHHHHHHhccEEEEecCCccee
Q 041046 110 HAAAAGFTLALSHDYVIMRRDKGVLY 135 (243)
Q Consensus 110 ~a~G~G~~la~~~D~~ia~~~~~~f~ 135 (243)
.+.-+++.++.+||-+++.+. +.++
T Consensus 154 ~~~s~~YyLASaAD~I~l~P~-G~v~ 178 (618)
T PRK10949 154 SYSQGQYYLASFANKIYLSPQ-GVVD 178 (618)
T ss_pred CccchhhhhhhhCCEEEECCC-ceEE
Confidence 445678999999999999877 5554
No 136
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.90 E-value=0.00052 Score=63.54 Aligned_cols=144 Identities=22% Similarity=0.244 Sum_probs=93.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCC--ChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcC
Q 041046 22 DEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGL--DLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDL 99 (243)
Q Consensus 22 ~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~--dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (243)
..-++.....+.+..+++.+.++.-+ +|.+.. |.|. .+++-.. ....+.. +..-..++..
T Consensus 69 ~gGs~g~~~~~Ki~ra~~~A~~~~~P--~v~l~d-----sgGa~~r~~eg~~---------~l~~~g~-i~~~~~~~~~- 130 (493)
T PF01039_consen 69 LGGSVGEVHGEKIARAIELALENGLP--LVYLVD-----SGGAFLRMQEGVE---------SLMGMGR-IFRAIARLSG- 130 (493)
T ss_dssp GGGTBSHHHHHHHHHHHHHHHHHTEE--EEEEEE-----ESSBCGGGGGHHH---------HHHHHHH-HHHHHHHHHT-
T ss_pred ecCCCCcccceeeehHHHHHHHcCCC--cEEecc-----ccccccccchhhh---------hhhhhHH-HHHHHHHHhc-
Confidence 34689999999999999999987654 344432 3444 4443221 1112222 2233344555
Q ss_pred CCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHH--
Q 041046 100 PMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEE-- 177 (243)
Q Consensus 100 ~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~e-- 177 (243)
..|+|+++.|+|.|+|..++..||++|++++.+.+ ++.- +...+ ..+|+.++.++
T Consensus 131 ~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i-------~l~G--------------P~vv~--~~~Ge~~~~~~lg 187 (493)
T PF01039_consen 131 GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARI-------FLAG--------------PRVVE--SATGEEVDSEELG 187 (493)
T ss_dssp TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEE-------ESST--------------HHHHH--HHHSSCTSHHHHH
T ss_pred CCCeEEEEccccccchhhcccccCccccCccceEE-------Eecc--------------ccccc--cccCccccchhhh
Confidence 99999999999999999999999999999874544 3321 22211 12467777665
Q ss_pred -----HHHcCchhhhcCChHHHHHHHHHHHHHHh
Q 041046 178 -----ALRMGLVQAAYDSEEQVAEASMRLAKQMA 206 (243)
Q Consensus 178 -----A~~~Glv~~v~~~~~~l~~~a~~~a~~la 206 (243)
+...|.+|.++++.++..+.+.++...+-
T Consensus 188 G~~~h~~~sG~~d~v~~de~~a~~~ir~~ls~lp 221 (493)
T PF01039_consen 188 GADVHAAKSGVVDYVVDDEEDALAQIRRLLSYLP 221 (493)
T ss_dssp BHHHHHHTSSSSSEEESSHHHHHHHHHHHHHTS-
T ss_pred hhhhhcccCCCceEEEechHHHHHHHHHhhcccc
Confidence 34789999999986666666666665554
No 137
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=97.79 E-value=0.0017 Score=60.86 Aligned_cols=147 Identities=14% Similarity=0.146 Sum_probs=90.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCC
Q 041046 22 DEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPM 101 (243)
Q Consensus 22 ~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 101 (243)
..-+++....+.+.++++.+.+..-+ +|.+...|+.+-.+ ..+.+.. .. .+. .+..-..++.....
T Consensus 141 ~GGs~g~~~~~Ki~r~~elA~~~~lP--lV~l~DSgGarl~~-q~e~~~~-------~~---~~g-~if~~~~~ls~~~V 206 (569)
T PLN02820 141 KGGTYYPITVKKHLRAQEIAAQCRLP--CIYLVDSGGANLPR-QAEVFPD-------RD---HFG-RIFYNQARMSSAGI 206 (569)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHcCCC--EEEEEeCCCcCCcc-cccccch-------Hh---HHH-HHHHHHHHHhCCCC
Confidence 35689999999999999999887554 55554444333211 0011100 00 111 11122223455679
Q ss_pred cEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHH---
Q 041046 102 PTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEA--- 178 (243)
Q Consensus 102 p~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA--- 178 (243)
|.|+++.|+|.|||......||++|++++.+.++ +. | +...+. .+|+.+++++.
T Consensus 207 P~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~-------~a----G----------P~vV~~--~~Ge~v~~eeLGGa 263 (569)
T PLN02820 207 PQIALVLGSCTAGGAYVPAMADESVIVKGNGTIF-------LA----G----------PPLVKA--ATGEEVSAEDLGGA 263 (569)
T ss_pred CEEEEEeCCCChHHHHHHHhCCceEEecCCcEEE-------ec----C----------HHHHHh--hcCcccCHHHhCCH
Confidence 9999999999999999999999999998755443 21 1 111111 13444554443
Q ss_pred --H--HcCchhhhcCChHHHHHHHHHHHHHH
Q 041046 179 --L--RMGLVQAAYDSEEQVAEASMRLAKQM 205 (243)
Q Consensus 179 --~--~~Glv~~v~~~~~~l~~~a~~~a~~l 205 (243)
+ ..|.+|.++++..+..+.+.++...|
T Consensus 264 ~~h~~~sGv~d~~~~de~~a~~~~R~lls~L 294 (569)
T PLN02820 264 DVHCKVSGVSDHFAQDELHALAIGRNIVKNL 294 (569)
T ss_pred HHhcccccccccccCchHHHHHHHHHHHHhc
Confidence 2 47999999988666666666666555
No 138
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.76 E-value=0.0054 Score=52.65 Aligned_cols=146 Identities=12% Similarity=0.108 Sum_probs=87.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHH-HhcCC
Q 041046 22 DEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAA-MMDLP 100 (243)
Q Consensus 22 ~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~ 100 (243)
..-++....-+.+.++++.+.+..-+ +|++..+|+ +-+++-.. . ...+.. ....+.. ...-.
T Consensus 145 ~gGSmG~v~geKi~ra~e~A~~~rlP--lV~l~~SGG-----ARmQEg~~--------s-L~qmak-~saa~~~~~~~~~ 207 (296)
T CHL00174 145 MGGSMGSVVGEKITRLIEYATNESLP--LIIVCASGG-----ARMQEGSL--------S-LMQMAK-ISSALYDYQSNKK 207 (296)
T ss_pred cccCcCHHHHHHHHHHHHHHHHcCCC--EEEEECCCC-----ccccccch--------h-hhhhHH-HHHHHHHHHHcCC
Confidence 34689999999999999999877544 566655443 33332110 0 001111 1111222 22467
Q ss_pred CcEEEEECcccchhHHH-HHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHH
Q 041046 101 MPTVAAVNGHAAAAGFT-LALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEAL 179 (243)
Q Consensus 101 kp~Ia~v~G~a~G~G~~-la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~ 179 (243)
.|.|+++.|+|.||+.. +++.||++|+.++ +.++ + .|...+...+| ... .-.-=+|+-.+
T Consensus 208 vP~Isvl~gPt~GG~aas~a~l~Diiiae~~-A~Ig-------f----AGPrVIe~t~g-e~l------pe~fq~ae~l~ 268 (296)
T CHL00174 208 LFYISILTSPTTGGVTASFGMLGDIIIAEPN-AYIA-------F----AGKRVIEQTLN-KTV------PEGSQAAEYLF 268 (296)
T ss_pred CCEEEEEcCCCchHHHHHHHHcccEEEEeCC-eEEE-------e----eCHHHHHHhcC-CcC------CcccccHHHHH
Confidence 99999999999999765 5677999999554 5443 3 11111111122 100 11112467788
Q ss_pred HcCchhhhcCChHHHHHHHHHHHHH
Q 041046 180 RMGLVQAAYDSEEQVAEASMRLAKQ 204 (243)
Q Consensus 180 ~~Glv~~v~~~~~~l~~~a~~~a~~ 204 (243)
+.|+||.||+. .++.+...++.+-
T Consensus 269 ~~G~vD~iV~r-~~lr~~l~~ll~~ 292 (296)
T CHL00174 269 DKGLFDLIVPR-NLLKGVLSELFQL 292 (296)
T ss_pred hCcCceEEEcH-HHHHHHHHHHHHh
Confidence 99999999998 7787777666543
No 139
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.74 E-value=0.0015 Score=60.63 Aligned_cols=145 Identities=12% Similarity=0.148 Sum_probs=90.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCC
Q 041046 22 DEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPM 101 (243)
Q Consensus 22 ~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 101 (243)
..-++.....+.+.++++.+.++.-+ +|.+..+|+. .+.+-.. ....+.+.+... ....-..
T Consensus 94 ~gGS~g~~~~~K~~r~~e~A~~~~lP--lV~l~dSgGa-----rm~eg~~---------~l~~~~~~~~~~--~~~s~~i 155 (512)
T TIGR01117 94 MGGSLGEMHAAKIVKIMDLAMKMGAP--VVGLNDSGGA-----RIQEAVD---------ALKGYGDIFYRN--TIASGVV 155 (512)
T ss_pred cccCCCHHHHHHHHHHHHHHHHcCCC--EEEEecCCCC-----Cccccch---------hhhhHHHHHHHH--HHHcCCC
Confidence 34589999999999999999887654 4555443332 2221000 000111111111 1123468
Q ss_pred cEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHH---
Q 041046 102 PTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEA--- 178 (243)
Q Consensus 102 p~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA--- 178 (243)
|.|+++.|+|.||+......||++|++++.+.++ + .|...+... +|+.+++++.
T Consensus 156 P~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~-------~----aGP~vv~~~------------~Ge~v~~e~lGGa 212 (512)
T TIGR01117 156 PQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMF-------I----TGPQVIKTV------------TGEEVTAEQLGGA 212 (512)
T ss_pred cEEEEEecCCCcHHHHHHHhcCceEEeccceEEE-------e----cChHHHHhh------------cCcccchhhcchH
Confidence 9999999999999988888999999998744443 2 111111111 2444444433
Q ss_pred --H--HcCchhhhcCChHHHHHHHHHHHHHHhc
Q 041046 179 --L--RMGLVQAAYDSEEQVAEASMRLAKQMAG 207 (243)
Q Consensus 179 --~--~~Glv~~v~~~~~~l~~~a~~~a~~la~ 207 (243)
+ ..|.+|.++++.++..+.+.++...+-.
T Consensus 213 ~~h~~~sGv~d~~~~de~ea~~~~r~~ls~lp~ 245 (512)
T TIGR01117 213 MAHNSVSGVAHFIAEDDDDCIMLIRRLLSFLPS 245 (512)
T ss_pred HHhccccceeEEecCChHHHHHHHHHHHHhCCc
Confidence 3 5899999999988888888888776644
No 140
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.71 E-value=0.0016 Score=52.72 Aligned_cols=136 Identities=18% Similarity=0.190 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCC-eEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046 26 FGPSAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~d~~i~-~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
++..+...+...+-.++.++..+ ..+.+-+.|+...+| ..++..+...+.||.
T Consensus 36 I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG--------------------------~AIydtm~~ik~~V~ 89 (200)
T COG0740 36 IEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAG--------------------------LAIYDTMQFIKPPVS 89 (200)
T ss_pred echHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchh--------------------------HHHHHHHHhcCCCeE
Confidence 55555555555555555433222 145555555444333 345567778999999
Q ss_pred EEECcccchhHHHHHHhccEE--EEecCCcceeecccccCCCCchhhHH--HHHH-H--h------------CC-HHHHH
Q 041046 105 AAVNGHAAAAGFTLALSHDYV--IMRRDKGVLYMSEVDIGATLPDYFTA--LFRA-K--V------------GS-ATARR 164 (243)
Q Consensus 105 a~v~G~a~G~G~~la~~~D~~--ia~~~~~~f~~pe~~~Gl~~p~~g~~--~l~~-~--~------------g~-~~~a~ 164 (243)
..+-|.|...|.-|++++|.. ++.++ +++=.-... |. +-+.... .-.+ + + |. ...-.
T Consensus 90 ti~~G~AaSmgs~l~~aG~~g~r~~lPn-srimIHqP~-gg-~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~ 166 (200)
T COG0740 90 TICMGQAASMGSVLLMAGDKGKRFALPN-ARIMIHQPS-GG-AQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIE 166 (200)
T ss_pred EEEecHHHhHHHHHHhcCCCCCceeCCC-ceEEEecCC-cc-CccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 999999999999999999985 88787 554433333 32 1111111 1111 1 1 10 01111
Q ss_pred HHHhccCCCCHHHHHHcCchhhhcCC
Q 041046 165 DVLLRAKKIKGEEALRMGLVQAAYDS 190 (243)
Q Consensus 165 ~l~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
..+-...-++|+||+++||+|+|...
T Consensus 167 ~d~drd~~msa~eA~~yGLiD~V~~~ 192 (200)
T COG0740 167 KDTDRDTWMSAEEAKEYGLIDKVIES 192 (200)
T ss_pred HhhcccccCCHHHHHHcCCcceeccc
Confidence 22222344999999999999999986
No 141
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=97.70 E-value=0.0019 Score=53.23 Aligned_cols=146 Identities=12% Similarity=0.111 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHHHHHHHhCCCC-CeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046 26 FGPSAIDSILSAIAKAKAEATP-GSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~d~~i-~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
.+.++.+.+...+-.++.++.- ..-+.+.+.|+...+|-=+.... ....++..+...+-|+.
T Consensus 49 ~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~-----------------~glaIyD~m~~ik~~V~ 111 (222)
T PRK12552 49 VGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFET-----------------EAFAICDTMRYIKPPVH 111 (222)
T ss_pred hhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccc-----------------cHHHHHHHHHhcCCCeE
Confidence 4445888998888888754321 12466666666555552111111 13456667777888999
Q ss_pred EEECcccchhHHHHHHhccE--EEEecCCcceeecccccCCCCchhh-HHHHHH---------------HhCC-HHHHHH
Q 041046 105 AAVNGHAAAAGFTLALSHDY--VIMRRDKGVLYMSEVDIGATLPDYF-TALFRA---------------KVGS-ATARRD 165 (243)
Q Consensus 105 a~v~G~a~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~---------------~~g~-~~~a~~ 165 (243)
..+-|.|.+.+.-|++++|- |++.++ +.+-+-....|. ..... ...-.+ +-|. ...-.+
T Consensus 112 Tv~~G~AaS~AslIl~aG~kg~R~alpn-s~iMIHqP~~~~-~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~ 189 (222)
T PRK12552 112 TICIGQAMGTAAMILSAGTKGQRASLPH-ATIVLHQPRSGA-RGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSK 189 (222)
T ss_pred EEEEeehhhHHHHHHhCCCCCceecCCC-cEEEeccCCccc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999995 888888 666554444333 11110 111111 1110 111122
Q ss_pred HHhccCCCCHHHHHHcCchhhhcCC
Q 041046 166 VLLRAKKIKGEEALRMGLVQAAYDS 190 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
.+-.-.-++|+||+++||+|+|+.+
T Consensus 190 d~~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 190 DTDRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred HhcCCCcCCHHHHHHcCCCcEEecc
Confidence 2333344999999999999999965
No 142
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=97.40 E-value=0.0018 Score=59.53 Aligned_cols=145 Identities=22% Similarity=0.258 Sum_probs=89.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCC
Q 041046 22 DEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPM 101 (243)
Q Consensus 22 ~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 101 (243)
+.-++..-..+.+..+.+.+.++..+. +.+..+.|..---| +... .... .+..-..++... .
T Consensus 103 ~gGt~~~~~~~Ki~r~~~~A~~~g~P~-i~l~dsgGari~~~-----v~~l-------~g~g----~iF~~~a~~Sg~-I 164 (526)
T COG4799 103 KGGTLGEMTAKKILRAQELAIENGLPV-IGLNDSGGARIQEG-----VPSL-------AGYG----RIFYRNARASGV-I 164 (526)
T ss_pred ecccccccccchHHHHHHHHHHcCCCE-EEEEcccccccccC-----cccc-------ccch----HHHHHHHHhccC-C
Confidence 566788888888999999999877764 55555544322222 1110 0011 111222233444 9
Q ss_pred cEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHH----
Q 041046 102 PTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEE---- 177 (243)
Q Consensus 102 p~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~e---- 177 (243)
|.|++|.|+|.|||..+...||++|++++.+.+ .++-|+.- -. .||+.++++|
T Consensus 165 PqIsvv~G~c~gGgaY~pal~D~~imv~~~~~m-------fltGP~~i----k~------------vtGe~V~~e~LGGa 221 (526)
T COG4799 165 PQISVVMGPCAGGGAYSPALTDFVIMVRDQSYM-------FLTGPPVI----KA------------VTGEEVSAEELGGA 221 (526)
T ss_pred CEEEEEEecCcccccccccccceEEEEcCCccE-------EeeCHHHH----Hh------------hcCcEeehhhccch
Confidence 999999999999999999999999999985433 23222221 11 1344444332
Q ss_pred ---HHHcCchhhhcCChHHHHHHHHHHHHHHhc
Q 041046 178 ---ALRMGLVQAAYDSEEQVAEASMRLAKQMAG 207 (243)
Q Consensus 178 ---A~~~Glv~~v~~~~~~l~~~a~~~a~~la~ 207 (243)
+...|.+|.+.++.++..+.+.++..-+-.
T Consensus 222 ~vh~~~sGva~~~a~dd~~Ai~~vr~~lsylp~ 254 (526)
T COG4799 222 QVHARKSGVADLLAEDDEDAIELVRRLLSYLPS 254 (526)
T ss_pred hhhcccccceeeeecCHHHHHHHHHHHHHhcCc
Confidence 234599999998866656666666555543
No 143
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=97.25 E-value=0.014 Score=49.24 Aligned_cols=150 Identities=13% Similarity=0.207 Sum_probs=102.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCc
Q 041046 23 EHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMP 102 (243)
Q Consensus 23 ~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 102 (243)
.-++..-.=+.+..+++++-++.- . +|+++.+|+ +-+++-.- ..-+ .......+.++.....|
T Consensus 135 gGSmGsVvGeki~ra~E~A~e~k~-P-~v~f~aSGG-----ARMQEg~l---------SLMQ-MaktsaAl~~l~ea~lp 197 (294)
T COG0777 135 GGSMGSVVGEKITRAIERAIEDKL-P-LVLFSASGG-----ARMQEGIL---------SLMQ-MAKTSAALKRLSEAGLP 197 (294)
T ss_pred ccchhHHHHHHHHHHHHHHHHhCC-C-EEEEecCcc-----hhHhHHHH---------HHHH-HHHHHHHHHHHHhcCCc
Confidence 456777788999999999998754 4 788876554 33333110 0011 12345567777888999
Q ss_pred EEEEECcccchh-HHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHc
Q 041046 103 TVAAVNGHAAAA-GFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRM 181 (243)
Q Consensus 103 ~Ia~v~G~a~G~-G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~ 181 (243)
.|+++..+..|| -..+++..|+.||-+. +.+ |+.-|..--+.+.+.++ ... =+++-.++.
T Consensus 198 yIsVLt~PTtGGVsASfA~lGDi~iAEP~-AlI-------GFAGpRVIEQTire~LP-egf----------Q~aEfLleh 258 (294)
T COG0777 198 YISVLTDPTTGGVSASFAMLGDIIIAEPG-ALI-------GFAGPRVIEQTIREKLP-EGF----------QTAEFLLEH 258 (294)
T ss_pred eEEEecCCCccchhHhHHhccCeeecCcc-ccc-------ccCcchhhhhhhcccCC-cch----------hhHHHHHHc
Confidence 999999999988 4689999999999555 544 44222222344444443 111 135667799
Q ss_pred CchhhhcCChHHHHHHHHHHHHHHhcCC
Q 041046 182 GLVQAAYDSEEQVAEASMRLAKQMAGRK 209 (243)
Q Consensus 182 Glv~~v~~~~~~l~~~a~~~a~~la~~~ 209 (243)
|+||.||+. .++......+.+.+...+
T Consensus 259 G~iD~iv~R-~elr~tla~ll~~~~~~~ 285 (294)
T COG0777 259 GMIDMIVHR-DELRTTLASLLAKLTPQP 285 (294)
T ss_pred CCceeeecH-HHHHHHHHHHHHHhCCCC
Confidence 999999998 788888888888777665
No 144
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=97.13 E-value=0.015 Score=49.44 Aligned_cols=134 Identities=16% Similarity=0.201 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEE
Q 041046 27 GPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAA 106 (243)
Q Consensus 27 ~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~ 106 (243)
+++-+..=.+.++.++.=.-+- +.++--.|.+-+.|+ ++... .+.+.+-+..+.++++|+|+.
T Consensus 132 ~PeGyRKAlRlm~~AekF~lPi-itfIDT~GAypG~~A--EErGQ--------------~eAIA~nL~em~~LkvPiI~i 194 (317)
T COG0825 132 RPEGYRKALRLMKLAEKFGLPI-ITFIDTPGAYPGIGA--EERGQ--------------SEAIARNLREMARLKVPIISI 194 (317)
T ss_pred CchHHHHHHHHHHHHHHhCCCE-EEEecCCCCCCCcch--hhccc--------------HHHHHHHHHHHhCCCCCEEEE
Confidence 3777777777777777543332 444444444444333 33222 123445556778999999999
Q ss_pred ECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCchh
Q 041046 107 VNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQ 185 (243)
Q Consensus 107 v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~ 185 (243)
|=|-..+||.--...+|.+++-++ ++++. +++-| +..|=+ = ..++.+. -....++|.+.+++|+||
T Consensus 195 VIGEGgSGGALAi~vad~V~mle~-s~ySV--------isPEG~AsILWk-D--~~ka~eA-Ae~mkita~dLk~lgiID 261 (317)
T COG0825 195 VIGEGGSGGALAIGVADRVLMLEN-STYSV--------ISPEGCASILWK-D--ASKAKEA-AEAMKITAHDLKELGIID 261 (317)
T ss_pred EecCCCchhhHHhhHHHHHHHHHh-ceeee--------cChhhhhhhhhc-C--hhhhHHH-HHHcCCCHHHHHhCCCcc
Confidence 999988888877778999999988 67662 34444 333322 2 2333332 246789999999999999
Q ss_pred hhcCC
Q 041046 186 AAYDS 190 (243)
Q Consensus 186 ~v~~~ 190 (243)
.|++.
T Consensus 262 ~II~E 266 (317)
T COG0825 262 GIIPE 266 (317)
T ss_pred eeccC
Confidence 99984
No 145
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=96.91 E-value=0.17 Score=47.69 Aligned_cols=158 Identities=11% Similarity=0.013 Sum_probs=100.6
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046 25 RFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
+++.+..+...+.++.+++. .+- +|.|...++ |..|.+-+. .-....+.+++.++....+|.|
T Consensus 381 ~l~~~~a~Kaarfi~lc~~~-~iP-lv~l~D~pG-f~~G~~~E~--------------~G~~~~~a~l~~A~a~~~VP~i 443 (569)
T PLN02820 381 ILFTESALKGAHFIELCAQR-GIP-LLFLQNITG-FMVGSRSEA--------------SGIAKAGAKMVMAVACAKVPKI 443 (569)
T ss_pred ccCHHHHHHHHHHHHHHHhc-CCC-EEEEEECCC-CCCCHHHHH--------------hhHHHHHHHHHHHHHhCCCCEE
Confidence 47889999999999888875 444 555554433 555543332 2345667888999999999999
Q ss_pred EEECcccchhHHHHHH----hccEEEEecCCcceeecccccCCCCchhh-HHHHHH-Hh------C-----CHHHH-HH-
Q 041046 105 AAVNGHAAAAGFTLAL----SHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRA-KV------G-----SATAR-RD- 165 (243)
Q Consensus 105 a~v~G~a~G~G~~la~----~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~-~~------g-----~~~~a-~~- 165 (243)
++|-|.++|+|..-.. ..|++++.++ + .+|. ++.-+ +..+.+ .+ | ....+ ++
T Consensus 444 svi~g~a~G~g~~aM~g~~~~~d~~~awp~-A-------~i~v-mg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~ 514 (569)
T PLN02820 444 TIIVGGSFGAGNYGMCGRAYSPNFLFMWPN-A-------RIGV-MGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAK 514 (569)
T ss_pred EEEECCcchHHHHHhcCcCCCCCEEEECCC-C-------eEEe-cCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHH
Confidence 9999999998876553 5677777766 4 4455 44444 333322 12 1 01100 11
Q ss_pred H-HhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCC
Q 041046 166 V-LLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRK 209 (243)
Q Consensus 166 l-~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~ 209 (243)
+ -..-+..++-.|.+.|++|.|+++ .+.........+.....+
T Consensus 515 ~~~~~~~~~~p~~aa~~~~vD~VIdP-~dTR~~l~~~l~~~~~~~ 558 (569)
T PLN02820 515 TVEAYEREANPYYSTARLWDDGVIDP-ADTRRVLGLCLSAALNRS 558 (569)
T ss_pred HHHHHHHhCCHHHHHHcCCcCcccCH-HHHHHHHHHHHHHhhcCC
Confidence 1 112335678889999999999998 566666555555444443
No 146
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=96.83 E-value=0.021 Score=53.06 Aligned_cols=158 Identities=9% Similarity=0.099 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046 25 RFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
+++++......+.++.+++. .+- +|.|... ..|..|- ..+.........+++.++..++.|.|
T Consensus 309 ~~~~~~a~K~arfi~lcd~~-~iP-lv~l~dt-pGf~~g~--------------~~E~~g~~~~ga~~~~a~~~~~vP~i 371 (493)
T PF01039_consen 309 ALDPDGARKAARFIRLCDAF-NIP-LVTLVDT-PGFMPGP--------------EAERAGIIRAGARLLYALAEATVPKI 371 (493)
T ss_dssp EB-HHHHHHHHHHHHHHHHT-T---EEEEEEE-CEB--SH--------------HHHHTTHHHHHHHHHHHHHHH-S-EE
T ss_pred cCChHHHHHHHHHHHHHHhh-CCc-eEEEeec-ccccccc--------------hhhhcchHHHHHHHHHHHHcCCCCEE
Confidence 69999999999999999974 445 6666543 2343332 22223445667889999999999999
Q ss_pred EEECcccchhHHHHHHhc----cEEEEecCCcceeecccccCCCCchhh-HHHHHH-HhC-------CHH--HHHHHHh-
Q 041046 105 AAVNGHAAAAGFTLALSH----DYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRA-KVG-------SAT--ARRDVLL- 168 (243)
Q Consensus 105 a~v~G~a~G~G~~la~~~----D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~-~~g-------~~~--~a~~l~l- 168 (243)
.++-|.+.|+|+...... |+++|.++ +.+ |+ +++-+ +..+.+ ..- ... ....+--
T Consensus 372 tvi~~~~~Gga~~am~~~~~~~~~~~Awp~-a~~-------~v-m~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (493)
T PF01039_consen 372 TVIVRKAYGGAYYAMCGRGYGPDFVFAWPT-AEI-------GV-MGPEGAASILYRDELEAAEAEGADPEAQRAEKIAEY 442 (493)
T ss_dssp EEEEEEEEHHHHHHTTGGGGTTSEEEEETT--EE-------ES-S-HHHHHHHHTHHHHHHSCHCCHSHHHHHHHHHHHH
T ss_pred EEEeCCccCcchhhhcccccchhhhhhhhc-cee-------ee-cChhhhheeeehhhhhhhhcccchhHHHHHHHHHHH
Confidence 999999999988665555 78888777 544 44 34343 332222 110 000 1111111
Q ss_pred ccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCC
Q 041046 169 RAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRK 209 (243)
Q Consensus 169 ~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~ 209 (243)
.-+.-++..+.+.|++|.|+++ .+..........-..+++
T Consensus 443 ~~~~~~~~~~a~~~~~D~ii~p-~~tR~~l~~~l~~~~~~~ 482 (493)
T PF01039_consen 443 EDELSSPYRAASRGYVDDIIDP-AETRKVLIAALEMLWQKP 482 (493)
T ss_dssp HHHHSSHHHHHHTTSSSEESSG-GGHHHHHHHHHHHHTTSH
T ss_pred HHhcCCHHHHHhcCCCCCccCH-HHHHHHHHHHHHHHHhCc
Confidence 1223689999999999999998 667777766666555543
No 147
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.19 Score=42.10 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCe-EEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046 26 FGPSAIDSILSAIAKAKAEATPGS-ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~d~~i~~-vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
++.++.+.+...|-.++.+++-|= .+-+.+.|+.-.+| ..++..+..++-||-
T Consensus 101 Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtag--------------------------lAIYDtMq~ik~~V~ 154 (275)
T KOG0840|consen 101 IDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAG--------------------------LAIYDTMQYIKPDVS 154 (275)
T ss_pred CcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchh--------------------------hhHHHHHHhhCCCce
Confidence 888899999988888886555441 23333333333222 234445556666766
Q ss_pred EEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHH--------HHHHHhCCHHHHHHHH--hccCC--
Q 041046 105 AAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTA--------LFRAKVGSATARRDVL--LRAKK-- 172 (243)
Q Consensus 105 a~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~--------~l~~~~g~~~~a~~l~--l~g~~-- 172 (243)
..+-|.|.+-|.-|+.+ .+. .-++++|..++=++-|.+|.. ...+.+-....-.+++ .||++
T Consensus 155 Tic~G~Aas~aalLLaa-----G~K-G~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e 228 (275)
T KOG0840|consen 155 TICVGLAASMAALLLAA-----GAK-GKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLE 228 (275)
T ss_pred eeehhhHHhHHHHHHhc-----CCC-cceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 66667777766554443 122 356777777776665655421 1111121011111111 34544
Q ss_pred -----------CCHHHHHHcCchhhhcCC
Q 041046 173 -----------IKGEEALRMGLVQAAYDS 190 (243)
Q Consensus 173 -----------~~a~eA~~~Glv~~v~~~ 190 (243)
++|+||+++||||+|.+.
T Consensus 229 ~i~~d~dRd~fmsa~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 229 VIEKDMDRDRFMSAEEAKEYGLIDKVIDH 257 (275)
T ss_pred HHHhhhcccccCCHHHHHHhcchhhhhcC
Confidence 899999999999999974
No 148
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=93.38 E-value=2.1 Score=39.90 Aligned_cols=167 Identities=11% Similarity=0.131 Sum_probs=102.9
Q ss_pred EEEcCCCCCCCC-CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHH
Q 041046 13 LTLTGSSDVDEH-RFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRP 91 (243)
Q Consensus 13 i~ln~p~~~~~N-~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (243)
|.=|.|. ..| .++.+..+.-.+.++.... ..+- +|.|... ..|.-|-+-+. ....+...+
T Consensus 328 iIANqp~--~~~G~l~~~sa~KaArFI~~cd~-~~iP-lv~L~d~-pGFm~G~~~E~--------------~giik~Gak 388 (526)
T COG4799 328 IIANQPR--HLGGVLDIDSADKAARFIRLCDA-FNIP-LVFLVDT-PGFMPGTDQEY--------------GGIIKHGAK 388 (526)
T ss_pred EEecCcc--ccccccchHHHHHHHHHHHhhhc-cCCC-eEEEeCC-CCCCCChhHHh--------------ChHHHhhhH
Confidence 3345564 344 8999999999998855554 4555 5666443 55877775543 334556788
Q ss_pred HHHHHhcCCCcEEEEECcccchhHHHHH----HhccEEEEecCCcceeecccccCCCCchhh-HHHHH-HHhC---CHHH
Q 041046 92 VVAAMMDLPMPTVAAVNGHAAAAGFTLA----LSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFR-AKVG---SATA 162 (243)
Q Consensus 92 ~~~~l~~~~kp~Ia~v~G~a~G~G~~la----~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~-~~~g---~~~~ 162 (243)
++.++....+|.|..|-|.++|+|.... +.+|+.+|.++ + ++++ ..+-| ...+. +.+- .+..
T Consensus 389 l~~A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~-a-------~iaV-MG~egAv~i~~~k~l~~~~~~~~ 459 (526)
T COG4799 389 LLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPT-A-------EIAV-MGPEGAVSILYRKELAAAERPEE 459 (526)
T ss_pred HHhhHhhccCCeEEEEecccccceeeeecCccCCCceeEecCc-c-------eeee-cCHHHHHHHHHHHHhhcccCchh
Confidence 9999999999999999999999997543 34666666555 3 5555 33333 33322 2221 0111
Q ss_pred HH----H-HH--hccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcC
Q 041046 163 RR----D-VL--LRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208 (243)
Q Consensus 163 a~----~-l~--l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~ 208 (243)
-. + +. ..-+-..+--|.+.|++|.|++. .+...........+..+
T Consensus 460 ~~~~~~~~~~~eY~~~~~~p~~aa~r~~iD~vI~p-~~tR~~L~~~l~~~~~k 511 (526)
T COG4799 460 REALLRKQLIAEYEEQFSNPYYAAERGYIDAVIDP-ADTRAVLGRALSALANK 511 (526)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHhCCCCcccCH-HHHHHHHHHHHHHHhcC
Confidence 00 0 10 11122466778899999999998 45555555555555544
No 149
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=91.89 E-value=5 Score=33.43 Aligned_cols=97 Identities=12% Similarity=0.127 Sum_probs=67.3
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHH-HHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCH
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGF-TLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~-~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~ 160 (243)
+..++....+-+...+...-|+|+.|-|.+++||| ...+.+|-+||-++ +.+ -. .+--.+.+..++= .
T Consensus 87 i~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~g-a~i-------~v-M~~~s~ARVTk~~--v 155 (234)
T PF06833_consen 87 INQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANRLIALPG-AMI-------HV-MGKPSAARVTKRP--V 155 (234)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcchhcCCC-Cee-------ec-CChHHhHHHhhcC--H
Confidence 45666666677777788899999999999999998 58889998888764 322 22 2333345555442 3
Q ss_pred HHHHHHHhccCC--CCHHHHHHcCchhhhcC
Q 041046 161 TARRDVLLRAKK--IKGEEALRMGLVQAAYD 189 (243)
Q Consensus 161 ~~a~~l~l~g~~--~~a~eA~~~Glv~~v~~ 189 (243)
..-.++.-+--+ .+.+--.++|.++++.+
T Consensus 156 e~Le~la~s~PvfA~gi~ny~~lG~l~~l~~ 186 (234)
T PF06833_consen 156 EELEELAKSVPVFAPGIENYAKLGALDELWD 186 (234)
T ss_pred HHHHHHhhcCCCcCCCHHHHHHhccHHHHhc
Confidence 444455544444 55778889999999998
No 150
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=91.44 E-value=7.1 Score=35.61 Aligned_cols=163 Identities=9% Similarity=-0.014 Sum_probs=99.3
Q ss_pred EEEcCCCCCC-CCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHH
Q 041046 13 LTLTGSSDVD-EHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRP 91 (243)
Q Consensus 13 i~ln~p~~~~-~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (243)
|--|+|+ - .-.+..+....-.+.++.+.+. .+- .|.+...++ |-.|.+.+...- .....+
T Consensus 353 Ivgnn~k--f~~G~L~s~sa~KgarfIe~c~q~-~IP-Li~l~ni~G-fm~g~~~e~~gI--------------aK~gAk 413 (536)
T KOG0540|consen 353 IVGNNPK--FAGGVLFSESAVKGARFIELCDQR-NIP-LIFLQNITG-FMVGRAAEAGGI--------------AKHGAK 413 (536)
T ss_pred EeccCch--hcccccchhhhhhhHHHHHHHHhc-CCc-EEEEEccCC-ccccchhhhhch--------------hhhhhh
Confidence 4446662 1 2467777777777777777765 444 666666655 888887764332 233567
Q ss_pred HHHHHhcCCCcEEEEECcccchhHHH---HHHhccEEEEecCCcceeecccccCCCCchhhHH-HHH-----HHhCCHHH
Q 041046 92 VVAAMMDLPMPTVAAVNGHAAAAGFT---LALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTA-LFR-----AKVGSATA 162 (243)
Q Consensus 92 ~~~~l~~~~kp~Ia~v~G~a~G~G~~---la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~-~l~-----~~~g~~~~ 162 (243)
++.+....+.|-|..+.|.+.||-+. .++.-|+.|+.++ +++++- .+-++. .+. +.+...+.
T Consensus 414 lv~a~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~-A~Iavm--------G~~~a~~Vi~q~~~e~a~~~~~~ 484 (536)
T KOG0540|consen 414 LVYAVACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPN-ARIAVM--------GGKQAANVIFQITLEKAVALKAP 484 (536)
T ss_pred hhhhhhhccCceEEEEecCccCCcccccccccCCceeEEccc-ceeeec--------cccchhhhhhhhhhhhhhhhcch
Confidence 78888888999999999999997554 4567888888887 665521 111211 121 11211122
Q ss_pred HHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCC
Q 041046 163 RRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRK 209 (243)
Q Consensus 163 a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~ 209 (243)
..+.+ |.++.+ ...||+|.|+++ .+.....-..-+..+.+|
T Consensus 485 ~~E~f--~npy~a---~~Rg~~D~II~p-~~tR~vl~~~l~~~~~~p 525 (536)
T KOG0540|consen 485 YIEKF--GNPYYA---AARGWDDGIIDP-SDTRKVLGLDLQAAANKP 525 (536)
T ss_pred HHHHh--cCccHH---HHhhccccccCh-hHhhHHHHHHHHHHhcCC
Confidence 22333 666654 489999999998 444444333334444443
No 151
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=88.29 E-value=1.5 Score=38.27 Aligned_cols=79 Identities=23% Similarity=0.230 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHhCC---CCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046 28 PSAIDSILSAIAKAKAEA---TPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 28 ~~~~~~l~~~l~~~~~d~---~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
.....++.++|+.+.... .+-++||.+|.|. ++++... + -..+.+++..+|.|+|
T Consensus 54 ~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs-------~eDL~~F-N--------------~e~varai~~~~~Pvi 111 (319)
T PF02601_consen 54 EGAAASIVSALRKANEMGQADDFDVIIIIRGGGS-------IEDLWAF-N--------------DEEVARAIAASPIPVI 111 (319)
T ss_pred cchHHHHHHHHHHHHhccccccccEEEEecCCCC-------hHHhccc-C--------------hHHHHHHHHhCCCCEE
Confidence 356778888899988654 3444777787542 2222221 0 1567889999999999
Q ss_pred EEECcccchhHHHHHHhccEEEEecC
Q 041046 105 AAVNGHAAAAGFTLALSHDYVIMRRD 130 (243)
Q Consensus 105 a~v~G~a~G~G~~la~~~D~~ia~~~ 130 (243)
++| ||-.-. .-.=+.+|+|..|+.
T Consensus 112 saI-GHe~D~-ti~D~vAd~ra~TPt 135 (319)
T PF02601_consen 112 SAI-GHETDF-TIADFVADLRAPTPT 135 (319)
T ss_pred Eec-CCCCCc-hHHHHHHHhhCCCHH
Confidence 977 332222 123367888888887
No 152
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=87.49 E-value=2 Score=39.32 Aligned_cols=79 Identities=23% Similarity=0.275 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEE
Q 041046 27 GPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAA 106 (243)
Q Consensus 27 ~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~ 106 (243)
......++..+++.++..+++-++||.+|.| .++++.... -..+.+++..+|.|||++
T Consensus 168 G~~a~~~i~~al~~~~~~~~~dviii~RGGG-------s~eDL~~Fn---------------~e~~~rai~~~~~Pvis~ 225 (432)
T TIGR00237 168 GEGAVQSIVESIELANTKNECDVLIVGRGGG-------SLEDLWSFN---------------DEKVARAIFLSKIPIISA 225 (432)
T ss_pred CccHHHHHHHHHHHhhcCCCCCEEEEecCCC-------CHHHhhhcC---------------cHHHHHHHHcCCCCEEEe
Confidence 3456788888888888765566466667644 223322210 156788999999999997
Q ss_pred ECcccchhHHH-HHHhccEEEEecC
Q 041046 107 VNGHAAAAGFT-LALSHDYVIMRRD 130 (243)
Q Consensus 107 v~G~a~G~G~~-la~~~D~~ia~~~ 130 (243)
| ||-.- +. .=+.+|.|..|+.
T Consensus 226 i-GHe~D--~ti~D~vAd~ra~TPt 247 (432)
T TIGR00237 226 V-GHETD--FTISDFVADLRAPTPS 247 (432)
T ss_pred c-CcCCC--ccHHHHhhhccCCCcH
Confidence 7 22211 22 3367889988887
No 153
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=83.33 E-value=3.5 Score=37.57 Aligned_cols=77 Identities=27% Similarity=0.334 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEE-ecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEE
Q 041046 28 PSAIDSILSAIAKAKAEATPGSALIT-TSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAA 106 (243)
Q Consensus 28 ~~~~~~l~~~l~~~~~d~~i~~vvvl-~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~ 106 (243)
.....++.++++.+++..++. |+|+ +| |+.++++....+ ..+.++++.++.|+|++
T Consensus 175 ~~A~~eIv~aI~~an~~~~~D-vlIVaRG-------GGSiEDLW~FNd---------------E~vaRAi~~s~iPvISA 231 (440)
T COG1570 175 EGAAEEIVEAIERANQRGDVD-VLIVARG-------GGSIEDLWAFND---------------EIVARAIAASRIPVISA 231 (440)
T ss_pred CCcHHHHHHHHHHhhccCCCC-EEEEecC-------cchHHHHhccCh---------------HHHHHHHHhCCCCeEee
Confidence 345688999999999988888 4444 44 334444443211 45888999999999998
Q ss_pred ECcccchhHHHHH-HhccEEEEecC
Q 041046 107 VNGHAAAAGFTLA-LSHDYVIMRRD 130 (243)
Q Consensus 107 v~G~a~G~G~~la-~~~D~~ia~~~ 130 (243)
| ||-. -+.|+ ..+|+|-.|+.
T Consensus 232 V-GHEt--D~tL~DfVAD~RApTPT 253 (440)
T COG1570 232 V-GHET--DFTLADFVADLRAPTPT 253 (440)
T ss_pred c-ccCC--CccHHHhhhhccCCCch
Confidence 7 2211 12222 57788888876
No 154
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=82.40 E-value=4.1 Score=37.25 Aligned_cols=78 Identities=23% Similarity=0.241 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEE
Q 041046 28 PSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAV 107 (243)
Q Consensus 28 ~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v 107 (243)
.....++.++|+.++... +-++||.+|.| .++++.... -..+.+++..+|.|+|++|
T Consensus 175 ~~A~~~i~~al~~~~~~~-~Dviii~RGGG-------S~eDL~~Fn---------------~e~v~~ai~~~~~Pvis~I 231 (438)
T PRK00286 175 EGAAASIVAAIERANARG-EDVLIVARGGG-------SLEDLWAFN---------------DEAVARAIAASRIPVISAV 231 (438)
T ss_pred ccHHHHHHHHHHHhcCCC-CCEEEEecCCC-------CHHHhhccC---------------cHHHHHHHHcCCCCEEEec
Confidence 445788888888888643 34467777754 223322210 1568889999999999976
Q ss_pred CcccchhHHHHHHhccEEEEecC
Q 041046 108 NGHAAAAGFTLALSHDYVIMRRD 130 (243)
Q Consensus 108 ~G~a~G~G~~la~~~D~~ia~~~ 130 (243)
||-.-. .-.=+.+|.|..|++
T Consensus 232 -GHE~D~-tl~D~vAd~ra~TPt 252 (438)
T PRK00286 232 -GHETDF-TIADFVADLRAPTPT 252 (438)
T ss_pred -cCCCCc-cHHHHhhhccCCChH
Confidence 222111 113367888888887
No 155
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=76.62 E-value=11 Score=32.36 Aligned_cols=53 Identities=21% Similarity=0.215 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccc
Q 041046 34 ILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAA 112 (243)
Q Consensus 34 l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~ 112 (243)
+.++|+.+++||+.+ +||+-|.-+ . ..++... +++++ ...+||+|+.+-|.+.
T Consensus 188 fid~L~~fe~Dp~T~-~ivmiGEiG-----G------------~aEe~AA-------~~i~~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 188 FIDALEMFEADPETE-AIVMIGEIG-----G------------PAEEEAA-------EYIKA-NATRKPVVAYIAGRTA 240 (293)
T ss_pred HHHHHHHHhcCcccc-EEEEEecCC-----C------------cHHHHHH-------HHHHH-hccCCCEEEEEeccCC
Confidence 447889999999999 788877521 0 1122222 23333 3345999999999876
No 156
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=74.85 E-value=7.4 Score=30.27 Aligned_cols=63 Identities=17% Similarity=0.151 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEECccc
Q 041046 32 DSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHA 111 (243)
Q Consensus 32 ~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a 111 (243)
..+.++|..+.+||+++ +|++-+.+++=+. ++....+...+.+.-. ...++|+|+.+.|-.
T Consensus 59 ~~~~~~l~~~~~Dp~v~-vIlvd~~~G~g~~----------------~~~A~~l~~a~~~~~~--~~~~~pvVa~v~GT~ 119 (153)
T PF00549_consen 59 STRNEALEIEAADPEVK-VILVDIVGGIGSC----------------EDPAAGLIPAIKEAKA--EGRKKPVVARVCGTN 119 (153)
T ss_dssp SHHHHHHHHHHTSTTES-EEEEEEESSSSSH----------------HHHHHHHHHHHSHCTH--TTT-SEEEEEEESTT
T ss_pred HHHHHHHHHHhcCCCcc-EEEEEeccccCch----------------HHHHHHHHHHHHhccc--cCCCCcEEEEeeeec
Confidence 45677888899999999 8888664432221 1111121221111111 357899999999987
Q ss_pred ch
Q 041046 112 AA 113 (243)
Q Consensus 112 ~G 113 (243)
.-
T Consensus 120 ~d 121 (153)
T PF00549_consen 120 AD 121 (153)
T ss_dssp CH
T ss_pred CC
Confidence 76
No 157
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=74.59 E-value=22 Score=25.04 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=36.8
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG 57 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g 57 (243)
|.++..+++.+++++.| ++....+++.+.+..+-..+.++ .+|+--.+
T Consensus 1 ~~~~~~~~~~vi~l~G~-------L~f~~~~~~~~~l~~~~~~~~~~-~vilDls~ 48 (106)
T TIGR02886 1 IEFEVKGDVLIVRLSGE-------LDHHTAERVRRKIDDAIERRPIK-HLILNLKN 48 (106)
T ss_pred CeEEEECCEEEEEEecc-------cchhhHHHHHHHHHHHHHhCCCC-EEEEECCC
Confidence 45788899999999987 88888888888887765444567 77775444
No 158
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=72.92 E-value=15 Score=26.45 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=40.2
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCC--------CCeEEEEecC
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEAT--------PGSALITTSH 56 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~--------i~~vvvl~g~ 56 (243)
+..+..+++.+++++.| ++....+.+.+.+.++..... ++ .+|+--.
T Consensus 2 ~~~~~~~~v~ii~~~g~-------l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~vIlD~s 56 (117)
T PF01740_consen 2 IEIETHDGVLIIRLDGP-------LFFANAEEFRDRIRKLIDEDPERIKKRQTIK-NVILDMS 56 (117)
T ss_dssp CEEEEETTEEEEEEESE-------ESHHHHHHHHHHHHHHHCCSSS--HTSSSSS-EEEEEET
T ss_pred CeeEEECCEEEEEEeeE-------EEHHHHHHHHHHHHHhhhcccccccccccce-EEEEEEE
Confidence 56788999999999988 999999999999999997765 67 7888543
No 159
>smart00250 PLEC Plectin repeat.
Probab=72.89 E-value=2.7 Score=24.30 Aligned_cols=18 Identities=44% Similarity=0.669 Sum_probs=16.8
Q ss_pred ccCCCCHHHHHHcCchhh
Q 041046 169 RAKKIKGEEALRMGLVQA 186 (243)
Q Consensus 169 ~g~~~~a~eA~~~Glv~~ 186 (243)
+|+++|-.+|.+.||+|.
T Consensus 18 t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 18 TGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCcCHHHHHHcCCCCc
Confidence 789999999999999985
No 160
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=70.45 E-value=19 Score=25.32 Aligned_cols=48 Identities=13% Similarity=0.244 Sum_probs=34.7
Q ss_pred ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Q 041046 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG 57 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g 57 (243)
|..+..+++.++++..+ ++.+....+.+.+..+..++..+ .+++--.+
T Consensus 5 i~~~~~~~~~vi~~~G~-------l~~~~~~~~~~~l~~~~~~~~~~-~vvidls~ 52 (108)
T TIGR00377 5 IETEVQEGVVIVRLSGE-------LDAHTAPLLREKVTPAAERTGPR-PIVLDLED 52 (108)
T ss_pred EEEEEECCEEEEEEecc-------cccccHHHHHHHHHHHHHhcCCC-eEEEECCC
Confidence 46677899999999865 66666777778777766545666 67775444
No 161
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=68.31 E-value=20 Score=27.32 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcc
Q 041046 33 SILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGH 110 (243)
Q Consensus 33 ~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~ 110 (243)
.+.+.++.+.+||+.+ +|++.-.+ +. + .+.+.+..++.... ||+|+..-|.
T Consensus 41 ~~~d~l~~~~~D~~t~-~I~ly~E~-----------~~---d-----------~~~f~~~~~~a~~~-KPVv~lk~Gr 91 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTR-VIVLYLEG-----------IG---D-----------GRRFLEAARRAARR-KPVVVLKAGR 91 (138)
T ss_dssp -HHHHHHHHCT-SS---EEEEEES-------------S---------------HHHHHHHHHHHCCC-S-EEEEE---
T ss_pred CHHHHHHHHhcCCCCC-EEEEEccC-----------CC---C-----------HHHHHHHHHHHhcC-CCEEEEeCCC
Confidence 4778888999999999 77775432 00 0 12355566666666 9999999887
No 162
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=67.26 E-value=21 Score=31.30 Aligned_cols=54 Identities=11% Similarity=0.131 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccc
Q 041046 33 SILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAA 112 (243)
Q Consensus 33 ~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~ 112 (243)
.+.+.|+.+.+||+.+ +|++-+.+.. + . +....++.+. ....||+|+.+-|...
T Consensus 211 ~~~D~L~~~~~Dp~T~-~Ivl~~E~gG-----~-----------~-e~~aa~fi~~--------~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 211 NFIDCLKLFLNDPETE-GIILIGEIGG-----T-----------A-EEEAAEWIKN--------NPIKKPVVSFIAGITA 264 (317)
T ss_pred CHHHHHHHHhhCCCcc-EEEEEEecCC-----c-----------h-hHHHHHHHHh--------hcCCCcEEEEEecCCC
Confidence 3567788888888888 7777664210 0 0 1122222221 2468999999998864
No 163
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=65.70 E-value=2.1 Score=25.85 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=17.1
Q ss_pred hccCCCCHHHHHHcCchhhhc
Q 041046 168 LRAKKIKGEEALRMGLVQAAY 188 (243)
Q Consensus 168 l~g~~~~a~eA~~~Glv~~v~ 188 (243)
-+|++++-++|.+.||+|.-.
T Consensus 17 ~tg~~lsv~~A~~~glId~~~ 37 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDSDT 37 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-HHH
T ss_pred CCCeEEcHHHHHHCCCcCHHH
Confidence 368899999999999998654
No 164
>PLN02522 ATP citrate (pro-S)-lyase
Probab=57.31 E-value=37 Score=32.55 Aligned_cols=52 Identities=15% Similarity=0.159 Sum_probs=33.2
Q ss_pred HHHHHHHHHhCCCCCeEEEEecC-CCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccc
Q 041046 34 ILSAIAKAKAEATPGSALITTSH-GKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAA 112 (243)
Q Consensus 34 l~~~l~~~~~d~~i~~vvvl~g~-g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~ 112 (243)
+.+.|+.+++||+.+ +|++-+. |.. + . +.+.+..++.. ..||+|+.+-|.+.
T Consensus 210 ~~D~L~~~~~Dp~Tk-~IvlygEiGg~--------------~----e-------~~f~ea~~~a~-~~KPVVa~kaGrsa 262 (608)
T PLN02522 210 LSDHVLRFNNIPQIK-MIVVLGELGGR--------------D----E-------YSLVEALKQGK-VSKPVVAWVSGTCA 262 (608)
T ss_pred HHHHHHHHhcCCCCC-EEEEEEecCch--------------h----H-------HHHHHHHHHhc-CCCCEEEEeccCCC
Confidence 567778888888888 7777664 310 0 1 11223333333 78999999998876
No 165
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=56.68 E-value=65 Score=22.94 Aligned_cols=49 Identities=16% Similarity=0.265 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHH-HhcCCCcEEEEECc
Q 041046 32 DSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAA-MMDLPMPTVAAVNG 109 (243)
Q Consensus 32 ~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~kp~Ia~v~G 109 (243)
+++.++|+++-+++++. +|++|- ++...+.+.+++ +.+..+|+|-.+.|
T Consensus 30 ee~~~~l~~l~~~~d~g-II~Ite----------------------------~~~~~i~e~i~~~~~~~~~P~ii~IP~ 79 (100)
T PRK02228 30 EKLDEAVEEVLEDDDVG-ILVMHD----------------------------DDLEKLPRRLRRTLEESVEPTVVTLGG 79 (100)
T ss_pred HHHHHHHHHHhhCCCEE-EEEEeh----------------------------hHhHhhHHHHHHHHhcCCCCEEEEECC
Confidence 67888888887788887 787762 112223344444 56789999999976
No 166
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=55.55 E-value=81 Score=28.08 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Q 041046 24 HRFGPSAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 24 N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~ 56 (243)
.-|+++.+.+|.+.+.+.-+++++.++||++|.
T Consensus 78 ~~m~~~~w~~la~~I~~~~~~~~~dGvVItHGT 110 (351)
T COG0252 78 SDMTPEDWLRLAEAINEALDDGDVDGVVITHGT 110 (351)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCeEEEeCCC
Confidence 459999999999999999887765657777663
No 167
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=53.96 E-value=42 Score=29.41 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Q 041046 25 RFGPSAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~ 56 (243)
-++++.+.+|.+.+++.-+++++.++||++|.
T Consensus 56 ~~t~~~w~~la~~i~~~~~~~~~dG~VVtHGT 87 (323)
T smart00870 56 NMTPADWLKLAKRINEALADDGYDGVVVTHGT 87 (323)
T ss_pred cCCHHHHHHHHHHHHHHhccCCCCEEEEecCC
Confidence 48999999999999887666666657777764
No 168
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=53.79 E-value=52 Score=22.36 Aligned_cols=46 Identities=28% Similarity=0.497 Sum_probs=30.8
Q ss_pred eeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Q 041046 3 TLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG 57 (243)
Q Consensus 3 ~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g 57 (243)
.....+++.++.+..+ ++......+.+.+..+..++ ++ .+++-..+
T Consensus 2 ~~~~~~~~~ii~l~G~-------l~~~~~~~~~~~~~~~~~~~-~~-~viid~~~ 47 (99)
T cd07043 2 TVEERGGVLVVRLSGE-------LDAATAPELREALEELLAEG-PR-RLVLDLSG 47 (99)
T ss_pred ceEEECCEEEEEEece-------ecccchHHHHHHHHHHHHcC-CC-EEEEECCC
Confidence 3456778999999765 66666677777777666543 55 67775544
No 169
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=53.10 E-value=60 Score=22.67 Aligned_cols=54 Identities=13% Similarity=0.235 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHH-hcCCCcEEEEEC
Q 041046 30 AIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAM-MDLPMPTVAAVN 108 (243)
Q Consensus 30 ~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~kp~Ia~v~ 108 (243)
.-+++.++|.++.+++++. +|+++- ++.+.+.+.+..+ .....|+|..+-
T Consensus 26 ~~ee~~~~l~~l~~~~~~g-IIii~e----------------------------~~~~~~~~~l~~~~~~~~~P~iv~IP 76 (95)
T PF01990_consen 26 DPEEAEEALKELLKDEDVG-IIIITE----------------------------DLAEKIRDELDEYREESSLPLIVEIP 76 (95)
T ss_dssp SHHHHHHHHHHHHHHTTEE-EEEEEH----------------------------HHHTTHHHHHHHHHHTSSSSEEEEES
T ss_pred CHHHHHHHHHHHhcCCCcc-EEEeeH----------------------------HHHHHHHHHHHHHHhccCCceEEEcC
Confidence 3467888889999888987 888862 1122344444444 467999999997
Q ss_pred cccc
Q 041046 109 GHAA 112 (243)
Q Consensus 109 G~a~ 112 (243)
+.--
T Consensus 77 ~~~~ 80 (95)
T PF01990_consen 77 SKEG 80 (95)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 6543
No 170
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=52.89 E-value=88 Score=27.80 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Q 041046 24 HRFGPSAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 24 N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~ 56 (243)
.-++++.+..|.+.+++.-.++++.++||++|.
T Consensus 83 ~~mt~~dw~~la~~I~~~~~~~~~~GiVVtHGT 115 (349)
T TIGR00520 83 QDMNEEVLLKLAKGINELLASDDYDGIVITHGT 115 (349)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 358999999999999888776666757777664
No 171
>PRK06091 membrane protein FdrA; Validated
Probab=50.05 E-value=55 Score=31.01 Aligned_cols=53 Identities=23% Similarity=0.224 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccc
Q 041046 33 SILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAA 112 (243)
Q Consensus 33 ~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~ 112 (243)
.+.+.|+.+.+||+.+ +|++-+.+. .+.+. .+++..+.++.||+|+..-|..-
T Consensus 239 ~~~D~L~~L~~DP~Tk-vIvly~kpp--------------------aE~v~------~~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 239 SALTALEMLSADEKSE-VIAFVSKPP--------------------AEAVR------LKIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred CHHHHHHHHhhCCCCc-EEEEEEecC--------------------chHHH------HHHHHHHhhCCCCEEEEEecCCc
Confidence 3556666777777777 666654321 01111 13444444569999999988654
No 172
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=48.06 E-value=92 Score=21.64 Aligned_cols=47 Identities=15% Similarity=0.304 Sum_probs=35.1
Q ss_pred eeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Q 041046 3 TLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG 57 (243)
Q Consensus 3 ~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g 57 (243)
..+..+++..++++.| ++......+.+.+...-.++..+ .+|+.-.+
T Consensus 2 ~~~~~~~v~ii~~~G~-------l~f~~~~~~~~~l~~~~~~~~~~-~vilDls~ 48 (100)
T cd06844 2 PLEKVDDYWVVRLEGE-------LDHHSVEQFKEELLHNITNVAGK-TIVIDISA 48 (100)
T ss_pred ceEEECCEEEEEEEEE-------ecHhhHHHHHHHHHHHHHhCCCC-EEEEECCC
Confidence 3456788999999977 88888889999886555445667 78886443
No 173
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=44.61 E-value=2.3e+02 Score=25.29 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=48.4
Q ss_pred HHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhc---CCCcEEEEECcccc
Q 041046 36 SAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMD---LPMPTVAAVNGHAA 112 (243)
Q Consensus 36 ~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~kp~Ia~v~G~a~ 112 (243)
.-+.++.+.-... |+++--.|=.+|.|-- + ...+....+..++.+.+ -++|.=-...|+.+
T Consensus 161 ~~~~~~ak~~~aN-vl~fNYpGVg~S~G~~-s--------------~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SL 224 (365)
T PF05677_consen 161 DWIQRFAKELGAN-VLVFNYPGVGSSTGPP-S--------------RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSL 224 (365)
T ss_pred HHHHHHHHHcCCc-EEEECCCccccCCCCC-C--------------HHHHHHHHHHHHHHHHhcccCCChheEEEeeccc
Confidence 3455555555666 8999888877887742 1 12334456677777764 46777778899999
Q ss_pred hhHHHHHHhccE
Q 041046 113 AAGFTLALSHDY 124 (243)
Q Consensus 113 G~G~~la~~~D~ 124 (243)
|||..-.+..+.
T Consensus 225 GG~Vqa~AL~~~ 236 (365)
T PF05677_consen 225 GGGVQAEALKKE 236 (365)
T ss_pred cHHHHHHHHHhc
Confidence 999865554443
No 174
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=43.79 E-value=2.1e+02 Score=25.03 Aligned_cols=66 Identities=6% Similarity=0.154 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC-CCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcE
Q 041046 25 RFGPSAIDSILSAIAKAKAEATPGSALITTSH-GKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPT 103 (243)
Q Consensus 25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~-g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ 103 (243)
.++.+-+++|.+.++..-++.+ +||++|+ +..+. . +.+.++++.+....+.+
T Consensus 110 ~is~~~~~~~l~~~~~~l~~~d---~VvlsGSlP~g~~----~--------------------d~y~~li~~~~~~g~~v 162 (310)
T COG1105 110 EISEAELEQFLEQLKALLESDD---IVVLSGSLPPGVP----P--------------------DAYAELIRILRQQGAKV 162 (310)
T ss_pred CCCHHHHHHHHHHHHHhcccCC---EEEEeCCCCCCCC----H--------------------HHHHHHHHHHHhcCCeE
Confidence 4899999999999999555554 6888875 22221 1 23455666666778888
Q ss_pred EEEECcccchhHHH
Q 041046 104 VAAVNGHAAAAGFT 117 (243)
Q Consensus 104 Ia~v~G~a~G~G~~ 117 (243)
|.-..|.++-.++.
T Consensus 163 ilD~Sg~~L~~~L~ 176 (310)
T COG1105 163 ILDTSGEALLAALE 176 (310)
T ss_pred EEECChHHHHHHHc
Confidence 88777776655443
No 175
>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.60 E-value=62 Score=26.01 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCC
Q 041046 23 EHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGL 64 (243)
Q Consensus 23 ~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~ 64 (243)
...++.+-..+....|-.......++||.|++|.|. |.|-
T Consensus 101 LHG~tq~eAr~~L~~Fi~~a~~~~~rcv~VihGkG~--s~g~ 140 (184)
T COG2840 101 LHGLTQEEARQELGAFIARARAEGLRCVLVIHGKGR--SKGS 140 (184)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCc--CCCC
Confidence 345776655554444444444567888999999987 6663
No 176
>PRK11096 ansB L-asparaginase II; Provisional
Probab=42.61 E-value=1.5e+02 Score=26.36 Aligned_cols=32 Identities=9% Similarity=0.069 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Q 041046 23 EHRFGPSAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 23 ~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~ 56 (243)
..-++++.+.+|.+.+++ +++++.++||++|.
T Consensus 79 S~~~t~~~~~~l~~~i~~--~~~~~dGiVVtHGT 110 (347)
T PRK11096 79 SQDMNDEVWLTLAKKINT--DCDKTDGFVITHGT 110 (347)
T ss_pred cccCCHHHHHHHHHHHHH--hcCCCCEEEEeCCC
Confidence 345889999999999988 34556657777664
No 177
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=41.73 E-value=57 Score=26.79 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=18.4
Q ss_pred HHHHHHHHhcCCCcEEEEECccc
Q 041046 89 FRPVVAAMMDLPMPTVAAVNGHA 111 (243)
Q Consensus 89 ~~~~~~~l~~~~kp~Ia~v~G~a 111 (243)
...+++.+..+.|++++.+-||-
T Consensus 82 Lcs~~kkld~mkkkvlGICFGHQ 104 (245)
T KOG3179|consen 82 LCSFVKKLDFMKKKVLGICFGHQ 104 (245)
T ss_pred HHHHHHHHHhhccceEEEeccHH
Confidence 56677788888899999888873
No 178
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=40.49 E-value=92 Score=28.48 Aligned_cols=32 Identities=9% Similarity=0.138 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Q 041046 25 RFGPSAIDSILSAIAKAKAEATPGSALITTSHG 57 (243)
Q Consensus 25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g 57 (243)
-++++.+.+|.+.+.+.-++ .+.++||++|..
T Consensus 132 ~mtp~~W~~La~~I~~~~~~-~~dGvVVtHGTD 163 (419)
T PRK04183 132 NMTPEYWVEIAEAVYEEIKN-GADGVVVAHGTD 163 (419)
T ss_pred hCCHHHHHHHHHHHHHHhhc-cCCeEEEecCCc
Confidence 48899999999999887655 355588888765
No 179
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=38.45 E-value=1.2e+02 Score=25.27 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=33.1
Q ss_pred CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCc
Q 041046 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKF 59 (243)
Q Consensus 1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~ 59 (243)
||.++..+.+ |+ .++ ....++.+.++.+.+.+.++. ..+ +||++|.|..
T Consensus 1 ~iVIKiGGs~--l~--~~~--~~~~~~~~~l~~l~~~l~~l~---g~~-vvlVhGgg~~ 49 (252)
T cd04241 1 MIILKLGGSV--IT--DKD--RPETIREENLERIARELAEAI---DEK-LVLVHGGGSF 49 (252)
T ss_pred CEEEEEeceE--EE--cCC--CCCccCHHHHHHHHHHHHhcc---CCC-EEEEECCCcc
Confidence 4556666654 22 222 346799999999999998876 446 7888886643
No 180
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=37.92 E-value=2.7e+02 Score=24.20 Aligned_cols=108 Identities=12% Similarity=0.140 Sum_probs=53.7
Q ss_pred CCCCCCHHHHHHHHHHH-HHHHhCCCCCeEEEEecCCCccccCCCh-hhHHhc----ccccchH---HHHHHHHHhHHHH
Q 041046 22 DEHRFGPSAIDSILSAI-AKAKAEATPGSALITTSHGKFFSNGLDL-AWAQAA----GSRAGAR---ERLLYMVESFRPV 92 (243)
Q Consensus 22 ~~N~~~~~~~~~l~~~l-~~~~~d~~i~~vvvl~g~g~~F~~G~dl-~~~~~~----~~~~~~~---~~~~~~~~~~~~~ 92 (243)
..|.++++.+.+-...+ .++...+..+.+|++-|..+.|--+-+. ..+... ....+-. ...++.-....+.
T Consensus 121 a~~~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~ 200 (311)
T PF06258_consen 121 APNRITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPPEAEAA 200 (311)
T ss_pred CCCcCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHH
Confidence 57889988777765555 5566666666344555544555544331 111110 0000000 0001111112222
Q ss_pred HHHHh-cCCCcEEEEECcccchhHHHHHHhccEEEEecCC
Q 041046 93 VAAMM-DLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDK 131 (243)
Q Consensus 93 ~~~l~-~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~ 131 (243)
++... ..+.. -...|.--+-=+.+...||.++.|+|+
T Consensus 201 L~~~~~~~~~~--~~~~~~~~nPy~~~La~ad~i~VT~DS 238 (311)
T PF06258_consen 201 LRELLKDNPGV--YIWDGTGENPYLGFLAAADAIVVTEDS 238 (311)
T ss_pred HHHhhcCCCce--EEecCCCCCcHHHHHHhCCEEEEcCcc
Confidence 22222 23333 223666666677899999999999984
No 181
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=36.68 E-value=1.2e+02 Score=27.89 Aligned_cols=54 Identities=9% Similarity=0.113 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEECccc
Q 041046 32 DSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHA 111 (243)
Q Consensus 32 ~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a 111 (243)
-.+.+.++.+.+|++.+ +|++...+- . + . ..+.+..++... .||+|+..-|..
T Consensus 189 ~~~~d~l~~l~~D~~t~-~I~ly~E~~-----------~---~----~-------~~f~~aa~~a~~-~KPVv~~k~Grs 241 (447)
T TIGR02717 189 IDESDLLEYLADDPDTK-VILLYLEGI-----------K---D----G-------RKFLKTAREISK-KKPIVVLKSGTS 241 (447)
T ss_pred CCHHHHHHHHhhCCCCC-EEEEEecCC-----------C---C----H-------HHHHHHHHHHcC-CCCEEEEecCCC
Confidence 46678888888888888 777765420 0 0 1 123444455544 899999998886
Q ss_pred c
Q 041046 112 A 112 (243)
Q Consensus 112 ~ 112 (243)
-
T Consensus 242 ~ 242 (447)
T TIGR02717 242 E 242 (447)
T ss_pred h
Confidence 4
No 182
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=36.04 E-value=1.5e+02 Score=20.72 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=32.6
Q ss_pred eeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Q 041046 4 LEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG 57 (243)
Q Consensus 4 ~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g 57 (243)
+.+.+++..+.++.+ ++.....++.+.+...-.....+ .||+.-.+
T Consensus 5 i~~~~~~~v~~l~G~-------L~~~~a~~~~~~l~~~~~~~~~~-~vvlDls~ 50 (109)
T cd07041 5 IPVWDGVLVLPLIGD-------LDDERAEQLQERLLEAISRRRAR-GVIIDLTG 50 (109)
T ss_pred EEEeCCEEEEeeeee-------ECHHHHHHHHHHHHHHHHHcCCC-EEEEECCC
Confidence 456788999999977 89888999988764433223556 77775443
No 183
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=35.51 E-value=1.9e+02 Score=22.97 Aligned_cols=62 Identities=18% Similarity=0.291 Sum_probs=41.4
Q ss_pred CCCHHHHH-HHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcE
Q 041046 25 RFGPSAID-SILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPT 103 (243)
Q Consensus 25 ~~~~~~~~-~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ 103 (243)
..+.+.++ -...+++++-++.+ ++|+---|+ + .-....+.+.+..+.+++||+
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aD---vIIIDEIGp-------------M----------Elks~~f~~~ve~vl~~~kpl 133 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEAD---VIIIDEIGP-------------M----------ELKSKKFREAVEEVLKSGKPL 133 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCC---EEEEecccc-------------h----------hhccHHHHHHHHHHhcCCCcE
Confidence 45666666 66778888887654 677743332 0 011234677888889999999
Q ss_pred EEEECcccc
Q 041046 104 VAAVNGHAA 112 (243)
Q Consensus 104 Ia~v~G~a~ 112 (243)
||.+|=...
T Consensus 134 iatlHrrsr 142 (179)
T COG1618 134 IATLHRRSR 142 (179)
T ss_pred EEEEecccC
Confidence 999985533
No 184
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=33.34 E-value=25 Score=32.19 Aligned_cols=131 Identities=15% Similarity=0.234 Sum_probs=77.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccc-cCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCC
Q 041046 22 DEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFS-NGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLP 100 (243)
Q Consensus 22 ~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~-~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (243)
+.-++.+-.......+.+.+.++.-+ ++-|-..|.+.| -++|.- .+ .+...+.+ +++ .-+..-.
T Consensus 124 ~ggs~y~i~~kk~lr~~e~a~~~~~p--~iyL~DSgga~l~~~~es~-----~d----~~~~~~If--~n~--n~mss~~ 188 (536)
T KOG0540|consen 124 KGGSYYPITVKKHLRAQEIADNNRLP--CIYLVDSGGARLPRQAESF-----AD----SYHFGRIF--YNQ--NVMSSGN 188 (536)
T ss_pred cccccchhhHHHHhhHHHHHhhcCCC--ceeEecCccccCcchhhhc-----CC----hhhhheee--eec--ceeccCC
Confidence 45566777777777777777766554 344443333222 222211 00 11111100 000 1234568
Q ss_pred CcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHH--
Q 041046 101 MPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEA-- 178 (243)
Q Consensus 101 kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA-- 178 (243)
.|-|+.|-|.|.+||...-...|..++..+.+.+.+.. |+. .+ ..||+.++++|.
T Consensus 189 ipqis~Img~Ct~gg~y~pAm~d~~~~vk~~s~lfl~g-------p~l-----------Vk-----a~tnEevsqedlgg 245 (536)
T KOG0540|consen 189 IPQISVIMGSCTAGGAYVPAMADETIMVKDTSTLFLAG-------PPL-----------VK-----AATNEEVSQEDLGG 245 (536)
T ss_pred CCceeEEEecccCCceecccccceeEEecCcceEEecC-------Cch-----------hh-----hhccceeehhhcCC
Confidence 99999999999999999999999999998865543211 111 11 236888888876
Q ss_pred -----HHcCchhhhcCC
Q 041046 179 -----LRMGLVQAAYDS 190 (243)
Q Consensus 179 -----~~~Glv~~v~~~ 190 (243)
...|+.++-+.+
T Consensus 246 a~~hc~~sGv~~~~~~~ 262 (536)
T KOG0540|consen 246 ADLHCTTSGVADKAAKN 262 (536)
T ss_pred cceeeeeccchhhhhhc
Confidence 455888877765
No 185
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=33.33 E-value=2.5e+02 Score=24.87 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=35.3
Q ss_pred CCCcEEEEECcccchhHHHHHH---hccEEEEecCCcceeecccccCCCCchh
Q 041046 99 LPMPTVAAVNGHAAAAGFTLAL---SHDYVIMRRDKGVLYMSEVDIGATLPDY 148 (243)
Q Consensus 99 ~~kp~Ia~v~G~a~G~G~~la~---~~D~~ia~~~~~~f~~pe~~~Gl~~p~~ 148 (243)
-..|+|++|-|+.--|=-.|.- .|..+-=.+++.+|-.|+. |+ +|.-
T Consensus 84 ~~qP~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~--~m-Ipp~ 133 (369)
T PF02456_consen 84 GLQPFIGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQK--DM-IPPQ 133 (369)
T ss_pred CCCceEEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCC--CC-CCHH
Confidence 4689999999998777666654 8888877777677877775 67 4554
No 186
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=33.02 E-value=1.6e+02 Score=26.02 Aligned_cols=31 Identities=19% Similarity=0.183 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Q 041046 25 RFGPSAIDSILSAIAKAKAEATPGSALITTSHG 57 (243)
Q Consensus 25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g 57 (243)
-++++.+.+|.+.+++.-.+ +.++||++|..
T Consensus 58 ~~tp~~w~~la~~I~~~~~~--~dG~VVtHGTD 88 (336)
T TIGR00519 58 NMKPEYWVEIAEAVKKEYDD--YDGFVITHGTD 88 (336)
T ss_pred cCCHHHHHHHHHHHHHHHhc--CCeEEEccCCc
Confidence 48999999999999876543 44578887754
No 187
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=32.31 E-value=1.4e+02 Score=25.93 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=11.2
Q ss_pred CCcEEEEECcccc
Q 041046 100 PMPTVAAVNGHAA 112 (243)
Q Consensus 100 ~kp~Ia~v~G~a~ 112 (243)
.||+|+..-|..-
T Consensus 233 ~KPVV~lk~Grs~ 245 (300)
T PLN00125 233 EKPVVAFIAGLTA 245 (300)
T ss_pred CCCEEEEEecCCC
Confidence 8999999888764
No 188
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=31.84 E-value=52 Score=29.88 Aligned_cols=96 Identities=20% Similarity=0.220 Sum_probs=54.8
Q ss_pred EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEE--ecCC-CccccCCChhhHHh-----cccccchHHH
Q 041046 10 VFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALIT--TSHG-KFFSNGLDLAWAQA-----AGSRAGARER 81 (243)
Q Consensus 10 v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl--~g~g-~~F~~G~dl~~~~~-----~~~~~~~~~~ 81 (243)
|++|++.. |+....++|..+++.+.++. ++ .+|+ ++++ +..+...++..+-- ...+..+...
T Consensus 205 IGyI~I~~--------F~~~~~~~~~~al~~L~~~~-~~-GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~ 274 (406)
T COG0793 205 IGYIRIPS--------FGEGTYEDLEKALDELKKQG-AK-GLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKV 274 (406)
T ss_pred EEEEEecc--------cccchHHHHHHHHHHHHhcC-Cc-EEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCce
Confidence 89998863 66777778999999999876 67 4554 6665 56665555543211 0000000000
Q ss_pred HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHh
Q 041046 82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALS 121 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~ 121 (243)
...+... .-...++|++.++|+....++=-++.+
T Consensus 275 ~~~~~~~------~~~~~~~PlvvLvn~~SASAsEI~aga 308 (406)
T COG0793 275 NVYFSAS------GEALYDGPLVVLVNEGSASASEIFAGA 308 (406)
T ss_pred eeccccc------cccCCCCCEEEEECCCCccHHHHHHHH
Confidence 0000000 000358999999998887776545543
No 189
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=31.19 E-value=1.5e+02 Score=24.82 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=28.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCcc
Q 041046 23 EHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFF 60 (243)
Q Consensus 23 ~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F 60 (243)
.+.++++.++.+...+.++... .++ |-|+.|.|+.|
T Consensus 22 ~~gid~~~i~~~a~~i~~~~~~-g~e-V~iVvGGGni~ 57 (238)
T COG0528 22 GFGIDPEVLDRIANEIKELVDL-GVE-VAVVVGGGNIA 57 (238)
T ss_pred CCCCCHHHHHHHHHHHHHHHhc-CcE-EEEEECCCHHH
Confidence 4569999999999999999965 557 76777766544
No 190
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=30.72 E-value=2.2e+02 Score=24.72 Aligned_cols=30 Identities=17% Similarity=0.188 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Q 041046 25 RFGPSAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~ 56 (243)
-++++.+.+|.+.+.+.-++ +.++||++|.
T Consensus 53 ~~t~~~~~~la~~i~~~~~~--~~GvVVtHGT 82 (313)
T PF00710_consen 53 DMTPEDWLELARAIQAALDD--YDGVVVTHGT 82 (313)
T ss_dssp G--HHHHHHHHHHHHHHHTT--CSEEEEE--S
T ss_pred hcCHHHHHHHHHHHHHHHHh--cCeEEEecCc
Confidence 49999999999999999844 6657777764
No 191
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=30.47 E-value=1e+02 Score=25.63 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhh
Q 041046 23 EHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAW 68 (243)
Q Consensus 23 ~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~ 68 (243)
.|.+. ...++|...+..++..+.++ |.+=| ...|.+|.|+..
T Consensus 151 Gn~vG-~tfeelk~ii~~Ikdk~Rig-VClDT--CH~FaaGyDI~T 192 (281)
T KOG3997|consen 151 GNSVG-GTFEELKFIIGKIKDKSRIG-VCLDT--CHTFAAGYDIRT 192 (281)
T ss_pred CCccc-ccHHHHHHHHHhhcchhhhe-eeHhh--hhhhccccccch
Confidence 45544 34455555555555544443 22221 345666666553
No 192
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=30.01 E-value=1.4e+02 Score=23.88 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=18.4
Q ss_pred CCCeEEEEecCCCccccCCChhh
Q 041046 46 TPGSALITTSHGKFFSNGLDLAW 68 (243)
Q Consensus 46 ~i~~vvvl~g~g~~F~~G~dl~~ 68 (243)
++|+|+++-|+|+.-|+|+--.+
T Consensus 144 ~P~VV~LiF~SGK~ViTGaK~~e 166 (185)
T COG2101 144 EPRVVLLLFGSGKLVITGAKSEE 166 (185)
T ss_pred CCCEEEEEecCCcEEEecCCCHH
Confidence 45668888999999999986543
No 193
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=29.97 E-value=1e+02 Score=24.51 Aligned_cols=38 Identities=26% Similarity=0.363 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++.++ ... +|++|.
T Consensus 155 llllDEP----t~~LD~~~~~~~~~~l~~~~~~-~~t-vi~~sH 192 (211)
T cd03225 155 ILLLDEP----TAGLDPAGRRELLELLKKLKAE-GKT-IIIVTH 192 (211)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHc-CCE-EEEEeC
Confidence 4566665 6999999999999999998765 433 666655
No 194
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=29.46 E-value=1.1e+02 Score=24.52 Aligned_cols=40 Identities=8% Similarity=0.165 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~ 56 (243)
.+-++.| .+.+|......+.+.+.++.++.... +|++|..
T Consensus 161 lllLDEP----~~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~sH~ 200 (218)
T cd03255 161 IILADEP----TGNLDSETGKEVMELLRELNKEAGTT-IVVVTHD 200 (218)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHhcCCe-EEEEECC
Confidence 4566665 69999999999999999987643433 6666653
No 195
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=29.42 E-value=95 Score=25.90 Aligned_cols=37 Identities=14% Similarity=0.306 Sum_probs=29.5
Q ss_pred EEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 13 LTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 13 i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
+-|+.| ..++|+++..++.+.+..+.++.- . .+|+|.
T Consensus 158 mLFDEP----TSALDPElv~EVL~vm~~LA~eGm-T-MivVTH 194 (240)
T COG1126 158 MLFDEP----TSALDPELVGEVLDVMKDLAEEGM-T-MIIVTH 194 (240)
T ss_pred EeecCC----cccCCHHHHHHHHHHHHHHHHcCC-e-EEEEec
Confidence 556665 689999999999999999998764 3 566665
No 196
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=27.61 E-value=3.1e+02 Score=23.84 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Q 041046 23 EHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG 57 (243)
Q Consensus 23 ~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g 57 (243)
....+.+-++.+...++.+.. ...- .+|+||++
T Consensus 77 ~~~~~~~hl~~~y~~~~~i~~-~~~D-G~IITGAp 109 (302)
T PRK05368 77 SKNTPAEHLENFYCTFEDIKD-EKFD-GLIITGAP 109 (302)
T ss_pred CCCCCHHHHHHhccCHHHhcc-CCCC-EEEEcCCC
Confidence 345677888999999999874 3455 89999976
No 197
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.51 E-value=1.3e+02 Score=24.20 Aligned_cols=39 Identities=28% Similarity=0.260 Sum_probs=29.3
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .+.+|....+.+.+.+.++.++.... +|++|.
T Consensus 152 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-vi~~tH 190 (220)
T cd03265 152 VLFLDEP----TIGLDPQTRAHVWEYIEKLKEEFGMT-ILLTTH 190 (220)
T ss_pred EEEEcCC----ccCCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 4556665 69999999999999999987653433 666665
No 198
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.44 E-value=1.3e+02 Score=24.17 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .+.+|....+.+.+.+.++.++.... +|++|.
T Consensus 152 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-iii~sH 190 (214)
T cd03297 152 LLLLDEP----FSALDRALRLQLLPELKQIKKNLNIP-VIFVTH 190 (214)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHHcCcE-EEEEec
Confidence 3556665 69999999999999999987643333 566654
No 199
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=26.40 E-value=1.3e+02 Score=24.36 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~ 56 (243)
.+-++.| .+.+|....+.+.+.+.++.++.... +++++..
T Consensus 167 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~sH~ 206 (228)
T PRK10584 167 VLFADEP----TGNLDRQTGDKIADLLFSLNREHGTT-LILVTHD 206 (228)
T ss_pred EEEEeCC----CCCCCHHHHHHHHHHHHHHHHhcCCE-EEEEecC
Confidence 4566665 69999999999999999987653433 6666653
No 200
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=26.09 E-value=1.4e+02 Score=22.90 Aligned_cols=38 Identities=13% Similarity=0.364 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .+.+|.+..+.+.+.+.++.++ ... +|+++.
T Consensus 103 illlDEP----~~~LD~~~~~~l~~~l~~~~~~-~~t-iii~sh 140 (163)
T cd03216 103 LLILDEP----TAALTPAEVERLFKVIRRLRAQ-GVA-VIFISH 140 (163)
T ss_pred EEEEECC----CcCCCHHHHHHHHHHHHHHHHC-CCE-EEEEeC
Confidence 3556665 6999999999999999998654 333 566554
No 201
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=26.03 E-value=4.6e+02 Score=23.08 Aligned_cols=33 Identities=12% Similarity=0.099 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Q 041046 23 EHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG 57 (243)
Q Consensus 23 ~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g 57 (243)
-.-++++.+.+|.+.+++.- +++.++||++|..
T Consensus 60 Ss~mt~~~w~~la~~I~~~~--~~~dG~VVtHGTD 92 (335)
T PRK09461 60 SSDMTPEDWQHIADDIKANY--DDYDGFVILHGTD 92 (335)
T ss_pred cccCCHHHHHHHHHHHHHHh--ccCCeEEEeeccc
Confidence 34599999999999998765 3445578887754
No 202
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=25.99 E-value=1.3e+02 Score=24.16 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=29.4
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~ 56 (243)
.+-++.| .+.+|......+.+.+.++.++.... +|++|..
T Consensus 162 illlDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~tH~ 201 (221)
T TIGR02211 162 LVLADEP----TGNLDNNNAKIIFDLMLELNRELNTS-FLVVTHD 201 (221)
T ss_pred EEEEeCC----CCcCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCC
Confidence 3556665 69999999999999999987643433 6666653
No 203
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=25.87 E-value=1.4e+02 Score=24.39 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .+.+|....+.+.+.+.++.++.... +|++|.
T Consensus 174 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-iiivsH 212 (236)
T cd03267 174 ILFLDEP----TIGLDVVAQENIRNFLKEYNRERGTT-VLLTSH 212 (236)
T ss_pred EEEEcCC----CCCCCHHHHHHHHHHHHHHHhcCCCE-EEEEec
Confidence 4566765 69999999999999999987654433 555554
No 204
>smart00463 SMR Small MutS-related domain.
Probab=25.86 E-value=1.5e+02 Score=19.67 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEecCCCc
Q 041046 28 PSAIDSILSAIAKAKAEATPGSALITTSHGKF 59 (243)
Q Consensus 28 ~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~ 59 (243)
.+....|.+.++.+......+.+.|++|.|..
T Consensus 12 ~eA~~~l~~~l~~~~~~~~~~~~~II~G~G~~ 43 (80)
T smart00463 12 EEALTALDKFLNNARLKGLEQKLVIITGKGKH 43 (80)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEcccCC
Confidence 46778888888888876652339999998854
No 205
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=25.34 E-value=2.8e+02 Score=20.41 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcc
Q 041046 31 IDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGH 110 (243)
Q Consensus 31 ~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~ 110 (243)
.+++.++|+++-.++++. +|++|- ...+.+.+.+.... ...|+|-.+-+.
T Consensus 45 ~eei~~~~~~~l~~~dig-IIlIte----------------------------~~a~~i~~~I~~~~-~~~PaIieIP~k 94 (115)
T TIGR01101 45 VSEIEDCFNRFLKRDDIA-IILINQ----------------------------HIAEMIRHAVDAHT-RSIPAVLEIPSK 94 (115)
T ss_pred HHHHHHHHHHHhhcCCeE-EEEEcH----------------------------HHHHHhHHHHHhcC-CcCCEEEEECCC
Confidence 478899999977788886 777751 12233455555533 788999888763
No 206
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=25.17 E-value=2.4e+02 Score=24.35 Aligned_cols=71 Identities=17% Similarity=0.203 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEE
Q 041046 28 PSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAV 107 (243)
Q Consensus 28 ~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v 107 (243)
.++-+.+.+.+++.. |+ +||+||....--..-|+..+.+. ...+-|.+..+..-+--.+.+..+|-|
T Consensus 140 ~eqp~~i~~Ll~~~~--PD---IlViTGHD~~~K~~~d~~dl~~Y-------rnSkyFVeaV~~aR~~ep~~D~LVIfA- 206 (287)
T PF05582_consen 140 KEQPEKIYRLLEEYR--PD---ILVITGHDGYLKNKKDYSDLNNY-------RNSKYFVEAVKEARKYEPNLDDLVIFA- 206 (287)
T ss_pred HHhhHHHHHHHHHcC--CC---EEEEeCchhhhcCCCChhhhhhh-------hccHHHHHHHHHHHhcCCCcccEEEEc-
Confidence 456666667777665 44 89999975544444577776652 222334444444444444566666643
Q ss_pred Ccccc
Q 041046 108 NGHAA 112 (243)
Q Consensus 108 ~G~a~ 112 (243)
|.|-
T Consensus 207 -GACQ 210 (287)
T PF05582_consen 207 -GACQ 210 (287)
T ss_pred -chhH
Confidence 4443
No 207
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=25.07 E-value=1e+02 Score=29.12 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=28.1
Q ss_pred CCCcEEEEECcccchh-HHHHHHhccEEEEecC
Q 041046 99 LPMPTVAAVNGHAAAA-GFTLALSHDYVIMRRD 130 (243)
Q Consensus 99 ~~kp~Ia~v~G~a~G~-G~~la~~~D~~ia~~~ 130 (243)
+..-+|++|+|+.+-- ||.+...|+++||++.
T Consensus 349 lg~r~vsvigg~s~EEq~fqls~gceiviatPg 381 (673)
T KOG0333|consen 349 LGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPG 381 (673)
T ss_pred ccceEEEEecccchhhhhhhhhccceeeecCch
Confidence 3477899999999876 8999999999999875
No 208
>PRK05665 amidotransferase; Provisional
Probab=24.81 E-value=1.6e+02 Score=24.60 Aligned_cols=22 Identities=9% Similarity=0.190 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCCCcEEEEECcc
Q 041046 89 FRPVVAAMMDLPMPTVAAVNGH 110 (243)
Q Consensus 89 ~~~~~~~l~~~~kp~Ia~v~G~ 110 (243)
..++++.+....+|+++.+-|+
T Consensus 80 l~~~i~~~~~~~~PilGIC~Gh 101 (240)
T PRK05665 80 LKTYLLKLYERGDKLLGVCFGH 101 (240)
T ss_pred HHHHHHHHHhcCCCEEEEeHHH
Confidence 4556666666789999777665
No 209
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=24.79 E-value=1.5e+02 Score=23.66 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=28.8
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~ 56 (243)
.+-++.| .+.+|.....++.+.+.++.+. ... +|++|..
T Consensus 159 llllDEP----t~~LD~~~~~~l~~~l~~~~~~-~~t-ii~vsH~ 197 (216)
T TIGR00960 159 LLLADEP----TGNLDPELSRDIMRLFEEFNRR-GTT-VLVATHD 197 (216)
T ss_pred EEEEeCC----CCcCCHHHHHHHHHHHHHHHHC-CCE-EEEEeCC
Confidence 3556665 6999999999999999998654 333 6666653
No 210
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.55 E-value=1.5e+02 Score=23.82 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .+.+|.....++.+.+.++.++.... ++++|.
T Consensus 152 lllLDEP----t~~LD~~~~~~~~~~l~~~~~~~~~t-iii~sH 190 (220)
T cd03293 152 VLLLDEP----FSALDALTREQLQEELLDIWRETGKT-VLLVTH 190 (220)
T ss_pred EEEECCC----CCCCCHHHHHHHHHHHHHHHHHcCCE-EEEEec
Confidence 4566665 69999999999999999986543333 666665
No 211
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=24.52 E-value=2.1e+02 Score=24.64 Aligned_cols=23 Identities=9% Similarity=0.257 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhCCCCCeEEEEecC
Q 041046 33 SILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 33 ~l~~~l~~~~~d~~i~~vvvl~g~ 56 (243)
.+.+.|+.+.+||+.+ +|++-..
T Consensus 185 ~~~D~l~~l~~Dp~T~-~I~lylE 207 (286)
T TIGR01019 185 SFIDVLEAFEKDPETE-AIVMIGE 207 (286)
T ss_pred CHHHHHHHHhhCCCCc-EEEEEEe
Confidence 5667777888888888 7777553
No 212
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.38 E-value=1.4e+02 Score=24.33 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++.++.... +|+++.
T Consensus 157 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-vi~vsH 195 (235)
T cd03261 157 LLLYDEP----TAGLDPIASGVIDDLIRSLKKELGLT-SIMVTH 195 (235)
T ss_pred EEEecCC----cccCCHHHHHHHHHHHHHHHHhcCcE-EEEEec
Confidence 3556665 69999999999999999987643333 666655
No 213
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=24.36 E-value=1.5e+02 Score=23.88 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .+.+|....+.+.+.+.++.++.... +|++|.
T Consensus 166 lllLDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~sH 204 (228)
T cd03257 166 LLIADEP----TSALDVSVQAQILDLLKKLQEELGLT-LLFITH 204 (228)
T ss_pred EEEecCC----CCCCCHHHHHHHHHHHHHHHHHcCCE-EEEEeC
Confidence 3556665 68999999999999999987643333 566655
No 214
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=24.26 E-value=2.3e+02 Score=24.53 Aligned_cols=22 Identities=5% Similarity=0.249 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhCCCCCeEEEEec
Q 041046 33 SILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 33 ~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+.+.|+.+.+||+.+ +|++..
T Consensus 187 ~~~D~l~~l~~Dp~T~-~I~lyl 208 (291)
T PRK05678 187 NFIDVLEAFEEDPETE-AIVMIG 208 (291)
T ss_pred CHHHHHHHHhhCCCCc-EEEEEE
Confidence 4567777778888888 677654
No 215
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=24.25 E-value=2e+02 Score=23.49 Aligned_cols=38 Identities=13% Similarity=0.323 Sum_probs=29.7
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
++-|+.| ..++|+++..+....+..+.++... .|++|.
T Consensus 173 vmLFDEP----TSALDPElVgEVLkv~~~LAeEgrT--Mv~VTH 210 (256)
T COG4598 173 VMLFDEP----TSALDPELVGEVLKVMQDLAEEGRT--MVVVTH 210 (256)
T ss_pred eEeecCC----cccCCHHHHHHHHHHHHHHHHhCCe--EEEEee
Confidence 4567765 6899999999999999999987764 355554
No 216
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.25 E-value=1.5e+02 Score=23.70 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++.+..... ++++|.
T Consensus 151 ~lllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~sH 189 (213)
T cd03259 151 LLLLDEP----LSALDAKLREELREELKELQRELGIT-TIYVTH 189 (213)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHHcCCE-EEEEec
Confidence 4566665 69999999999999999987543333 566654
No 217
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=24.23 E-value=1.6e+02 Score=23.63 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=29.0
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++.+..... +|+++.
T Consensus 149 llllDEP----t~~LD~~~~~~~~~~l~~~~~~~~~t-ii~vsh 187 (213)
T TIGR01277 149 ILLLDEP----FSALDPLLREEMLALVKQLCSERQRT-LLMVTH 187 (213)
T ss_pred EEEEcCC----CccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 4556665 69999999999999999987643433 566654
No 218
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=24.21 E-value=1.6e+02 Score=24.06 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=28.8
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .+.+|.....++.+.+.++.++.... ++++|.
T Consensus 135 lllLDEP----t~gLD~~~~~~l~~~l~~~~~~~~~t-ii~~sH 173 (230)
T TIGR01184 135 VLLLDEP----FGALDALTRGNLQEELMQIWEEHRVT-VLMVTH 173 (230)
T ss_pred EEEEcCC----CcCCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 4556665 69999999999999999987653433 566654
No 219
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.09 E-value=1.5e+02 Score=23.63 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=28.8
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .+.+|....+.+.+.+.++.++.... ++++|.
T Consensus 149 llllDEP----~~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~sH 187 (211)
T cd03298 149 VLLLDEP----FAALDPALRAEMLDLVLDLHAETKMT-VLMVTH 187 (211)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEec
Confidence 4556665 69999999999999999987543433 566654
No 220
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=24.07 E-value=2.7e+02 Score=25.28 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Q 041046 25 RFGPSAIDSILSAIAKAKAEATPGSALITTSHG 57 (243)
Q Consensus 25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g 57 (243)
-++++.+..|.+.+.+.-+++ ..++||++|..
T Consensus 119 ~mtp~~w~~La~~I~~~~~~~-~dGvVVtHGTD 150 (404)
T TIGR02153 119 NMKPEYWIKIAEAVAKALKEG-ADGVVVAHGTD 150 (404)
T ss_pred hCCHHHHHHHHHHHHHHhhcC-CCcEEEecCCh
Confidence 488999999999998876542 33488888765
No 221
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.86 E-value=4.5e+02 Score=23.30 Aligned_cols=66 Identities=9% Similarity=0.040 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEecCC--CccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046 32 DSILSAIAKAKAEATPGSALITTSHG--KFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 32 ~~l~~~l~~~~~d~~i~~vvvl~g~g--~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
+.-....+.+.+++.+.++||.-|.. ..|-.|-....+.. ....++|...+.++...+.+...||+
T Consensus 163 dWpk~i~~~l~~~~~~a~vVV~lGaND~q~~~~gd~~~kf~S-------~~W~~eY~kRvd~~l~ia~~~~~~V~ 230 (354)
T COG2845 163 DWPKAIPELLDKHPKPAAVVVMLGANDRQDFKVGDVYEKFRS-------DEWTKEYEKRVDAILKIAHTHKVPVL 230 (354)
T ss_pred ccHHHHHHHHHhcCCccEEEEEecCCCHHhcccCCeeeecCc-------hHHHHHHHHHHHHHHHHhcccCCcEE
Confidence 33344444455666776556666643 45555554433332 44456666777777777776666654
No 222
>PRK03202 6-phosphofructokinase; Provisional
Probab=23.67 E-value=4.9e+02 Score=22.78 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=36.0
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchh---HHHHHHhccEEEEecC
Q 041046 79 RERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAA---GFTLALSHDYVIMRRD 130 (243)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~---G~~la~~~D~~ia~~~ 130 (243)
........+.+.++.......+...|..+.|.-.|. ...++..+|+++..|.
T Consensus 140 ~TA~~~~~~~i~~l~~~a~s~~rv~iVEvMGR~~G~LAl~~ala~~a~~iliPE~ 194 (320)
T PRK03202 140 DTALNTAVEAIDRLRDTASSHERVFIVEVMGRHAGDLALHAGIAGGAEVILIPEV 194 (320)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCEEEEEECCCChHHHHHHHHHhcCCCEEEeCCC
Confidence 444555566666777666777888899999987765 3456667777777543
No 223
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=23.58 E-value=2.4e+02 Score=24.70 Aligned_cols=31 Identities=13% Similarity=0.014 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Q 041046 25 RFGPSAIDSILSAIAKAKAEATPGSALITTSHG 57 (243)
Q Consensus 25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g 57 (243)
-++++.+.+|.+.+.+.-.+ +.++||++|..
T Consensus 59 ~~t~~~w~~l~~~I~~~~~~--~dGiVVtHGTD 89 (323)
T cd00411 59 DMTDEDWLKIAKDINELYDS--YDGFVITHGTD 89 (323)
T ss_pred cCCHHHHHHHHHHHHHHHHh--cCcEEEEcCcc
Confidence 48899999999988876544 44477777753
No 224
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=23.58 E-value=5.9e+02 Score=24.38 Aligned_cols=119 Identities=10% Similarity=0.066 Sum_probs=70.1
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchh--hHHHHHHH
Q 041046 79 RERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDY--FTALFRAK 156 (243)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~--g~~~l~~~ 156 (243)
.+.+.+-+..+.+=+..+..+..|+|.++|-+.--.--|+.+..++.-. ....+...+. +..+ |+.-|.+.
T Consensus 380 l~al~~G~~NL~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~l~~~~~~--~g~~~~v~~~-----wa~GGeGa~eLA~~ 452 (587)
T PRK13507 380 VGLVEKGCANLLHHIGTVKKSGINPVVCINAFYTDTHAEIAIVRRLAEQ--AGARVAVSRH-----WEKGGEGALELADA 452 (587)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCHHHHHHHHHHHHH--cCCCEEEech-----hhccchhHHHHHHH
Confidence 4444444455555666778899999999999888888888877666522 1122222211 2333 34344433
Q ss_pred hCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCC---CChhHHHHHHHH
Q 041046 157 VGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRK---WAGEVYAEIRKS 221 (243)
Q Consensus 157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~---~~~~~~~~~K~~ 221 (243)
+ +-..+. +. + ...+++..+.+.+....+|+++-... +.+.+...+|+.
T Consensus 453 V---------v~a~e~-~s----~---fk~LYd~~~sI~EKIetIAkeIYGAdgVe~S~~A~kqLk~l 503 (587)
T PRK13507 453 V---------IDACNE-PN----D---FKFLYPLEMPLRERIETIAREVYGADGVSYTPEAEAKLKRL 503 (587)
T ss_pred H---------HHHhhC-cC----C---CcccCCCCCCHHHHHHHHHHHccCCCceeECHHHHHHHHHH
Confidence 3 222221 11 1 34456665778999999999988764 345555555553
No 225
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=23.50 E-value=1.6e+02 Score=23.52 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++.+. ... +|++|.
T Consensus 153 llllDEP----t~~LD~~~~~~l~~~l~~~~~~-~~t-vi~~sH 190 (213)
T cd03235 153 LLLLDEP----FAGVDPKTQEDIYELLRELRRE-GMT-ILVVTH 190 (213)
T ss_pred EEEEeCC----cccCCHHHHHHHHHHHHHHHhc-CCE-EEEEeC
Confidence 3556665 6999999999999999998753 333 566654
No 226
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=23.18 E-value=1.6e+02 Score=23.91 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .+.+|....+++.+.+.++.++.... +|++|.
T Consensus 166 lllLDEP----t~~LD~~~~~~l~~~l~~~~~~~g~t-vii~sH 204 (233)
T PRK11629 166 LVLADEP----TGNLDARNADSIFQLLGELNRLQGTA-FLVVTH 204 (233)
T ss_pred EEEEeCC----CCCCCHHHHHHHHHHHHHHHHhCCCE-EEEEeC
Confidence 4566665 69999999999999999987543333 566654
No 227
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=23.06 E-value=3.2e+02 Score=22.71 Aligned_cols=32 Identities=13% Similarity=0.354 Sum_probs=24.9
Q ss_pred HhHHHHHHHHhcCCCcEEEEE---------CcccchhHHHH
Q 041046 87 ESFRPVVAAMMDLPMPTVAAV---------NGHAAAAGFTL 118 (243)
Q Consensus 87 ~~~~~~~~~l~~~~kp~Ia~v---------~G~a~G~G~~l 118 (243)
+.+++.++-+...+||..-++ .|.|+|-|..+
T Consensus 125 ~~ln~AFrvL~e~~k~~LIai~kgryykr~~Gl~lgpG~fv 165 (262)
T KOG3040|consen 125 QRLNRAFRVLLEMKKPLLIAIGKGRYYKRVDGLCLGPGPFV 165 (262)
T ss_pred HHHHHHHHHHHcCCCCeEEEecCceeeeeccccccCchHHH
Confidence 457888888899998888776 58899887543
No 228
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=23.06 E-value=1.6e+02 Score=24.73 Aligned_cols=39 Identities=13% Similarity=0.017 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .|.+|......+.+.+.++.++.... +|++|.
T Consensus 154 lllLDEP----t~~LD~~~~~~l~~~L~~~~~~~~~t-viivsH 192 (257)
T PRK11247 154 LLLLDEP----LGALDALTRIEMQDLIESLWQQHGFT-VLLVTH 192 (257)
T ss_pred EEEEeCC----CCCCCHHHHHHHHHHHHHHHHHcCCE-EEEEeC
Confidence 3556665 69999999999999999986543333 566654
No 229
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=23.05 E-value=1.6e+02 Score=23.45 Aligned_cols=39 Identities=5% Similarity=0.077 Sum_probs=28.8
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .+.+|.....++.+.+.++.++.... +|++|.
T Consensus 151 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-vi~~sH 189 (213)
T cd03301 151 VFLMDEP----LSNLDAKLRVQMRAELKRLQQRLGTT-TIYVTH 189 (213)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHHcCCE-EEEEeC
Confidence 4566665 69999999999999999987643433 566654
No 230
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=23.04 E-value=22 Score=29.60 Aligned_cols=106 Identities=13% Similarity=0.107 Sum_probs=58.7
Q ss_pred hcCCCcEEEEECcccchhHHHHHHhccEE-----EEecCCcceeecccccCCCCchhhHHHHHHHhCCHHH--HHHHHhc
Q 041046 97 MDLPMPTVAAVNGHAAAAGFTLALSHDYV-----IMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATA--RRDVLLR 169 (243)
Q Consensus 97 ~~~~kp~Ia~v~G~a~G~G~~la~~~D~~-----ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~--a~~l~l~ 169 (243)
-.++|.-|. +-|..+||+..+.++++.+ +..|+ ++.+.|+..+-+.+|-.+ .+++...- ... ....+
T Consensus 144 ~~~dktkiv-lfGrSlGGAvai~lask~~~ri~~~ivEN-TF~SIp~~~i~~v~p~~~-k~i~~lc~-kn~~~S~~ki-- 217 (300)
T KOG4391|consen 144 PDLDKTKIV-LFGRSLGGAVAIHLASKNSDRISAIIVEN-TFLSIPHMAIPLVFPFPM-KYIPLLCY-KNKWLSYRKI-- 217 (300)
T ss_pred ccCCcceEE-EEecccCCeeEEEeeccchhheeeeeeec-hhccchhhhhheeccchh-hHHHHHHH-Hhhhcchhhh--
Confidence 345665554 6899999999888887754 24477 788888888887666443 22222211 000 00001
Q ss_pred cCCCCHHHHHHcCchhhhcCCh--HHHHHHHHHHHHHHhcCC
Q 041046 170 AKKIKGEEALRMGLVQAAYDSE--EQVAEASMRLAKQMAGRK 209 (243)
Q Consensus 170 g~~~~a~eA~~~Glv~~v~~~~--~~l~~~a~~~a~~la~~~ 209 (243)
| .-.---..=.|+-|++||+. -.|.+.+-..-+++...|
T Consensus 218 ~-~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~~Krl~eFP 258 (300)
T KOG4391|consen 218 G-QCRMPFLFISGLKDELVPPVMMRQLYELCPSRTKRLAEFP 258 (300)
T ss_pred c-cccCceEEeecCccccCCcHHHHHHHHhCchhhhhheeCC
Confidence 1 00001112358889999973 123444445566666665
No 231
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=23.01 E-value=1.7e+02 Score=22.80 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .+.+|.+..+.+.+.+.++.++.... +++++.
T Consensus 118 llllDEP----~~~LD~~~~~~~~~~l~~~~~~~~~t-iii~sh 156 (180)
T cd03214 118 ILLLDEP----TSHLDIAHQIELLELLRRLARERGKT-VVMVLH 156 (180)
T ss_pred EEEEeCC----ccCCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 3556665 69999999999999999987642333 566654
No 232
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=22.77 E-value=1.6e+02 Score=24.70 Aligned_cols=40 Identities=5% Similarity=0.140 Sum_probs=29.7
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~ 56 (243)
.+-++.| .+.+|.....++.+.+.++.++.... +|++|..
T Consensus 164 lllLDEP----t~~LD~~~~~~l~~~l~~~~~~~g~t-iiivsH~ 203 (269)
T PRK11831 164 LIMFDEP----FVGQDPITMGVLVKLISELNSALGVT-CVVVSHD 203 (269)
T ss_pred EEEEcCC----CccCCHHHHHHHHHHHHHHHHhcCcE-EEEEecC
Confidence 4566665 69999999999999999987653433 6666653
No 233
>PF11524 SeleniumBinding: Selenium binding protein; InterPro: IPR021603 Selenium is an important nutrient which needs to be regulated since lack of the nutrient leads to cell abnormalities and high concentrations are toxic.SeBP regulates the level of free selenium in the cell by sequestering the nutrient during transport. SeBP acts as a pentamer and delivers the selenium to the selenophosphate synthetase enzyme []. Each subunit is composed of an alpha helix on top of a four stranded twisted ss sheet, stabilised by hydrogen bonds []. members of this entry are restricted to the archaeal Methanococcales.; PDB: 2JZ7_D.
Probab=22.37 E-value=51 Score=22.32 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=27.6
Q ss_pred hccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHH
Q 041046 168 LRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205 (243)
Q Consensus 168 l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l 205 (243)
.|...+++-|.+-+|+|+.++++.|++.+.-.+.++..
T Consensus 10 TT~~eIPGiely~~gIvS~~~envd~li~~lee~vk~k 47 (81)
T PF11524_consen 10 TTTNEIPGIELYYLGIVSEASENVDELIKKLEEKVKAK 47 (81)
T ss_dssp ESSS--TTS--EEEEEEEEBSSSHHHHHHHHHHHHHHT
T ss_pred EEcCcCCCeEEEeehhHHHHHhhHHHHHHHHHHHHHhC
Confidence 45677889999999999999998888877777776654
No 234
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=22.33 E-value=1.7e+02 Score=23.30 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=28.8
Q ss_pred HHHHhHHHHHHHHhcCC--CcEEEEECcccchhHHHHHHhccE
Q 041046 84 YMVESFRPVVAAMMDLP--MPTVAAVNGHAAAAGFTLALSHDY 124 (243)
Q Consensus 84 ~~~~~~~~~~~~l~~~~--kp~Ia~v~G~a~G~G~~la~~~D~ 124 (243)
.....+...+..+...+ .+--..+-|+|.||.+.+.++++.
T Consensus 77 ~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~ 119 (218)
T PF01738_consen 77 QVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD 119 (218)
T ss_dssp HHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc
Confidence 33445566677777777 334445779999999998888764
No 235
>PRK10908 cell division protein FtsE; Provisional
Probab=22.29 E-value=1.8e+02 Score=23.42 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .+.+|....+++.+.+.++.++ ... ++++|.
T Consensus 158 llllDEP----t~~LD~~~~~~l~~~l~~~~~~-~~t-iii~sH 195 (222)
T PRK10908 158 VLLADEP----TGNLDDALSEGILRLFEEFNRV-GVT-VLMATH 195 (222)
T ss_pred EEEEeCC----CCcCCHHHHHHHHHHHHHHHHC-CCE-EEEEeC
Confidence 4556665 6999999999999999998754 333 666655
No 236
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=22.23 E-value=2.2e+02 Score=22.27 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCCcEEEEECccc
Q 041046 89 FRPVVAAMMDLPMPTVAAVNGHA 111 (243)
Q Consensus 89 ~~~~~~~l~~~~kp~Ia~v~G~a 111 (243)
..++++......+|+++.+.|+-
T Consensus 70 ~~~~i~~~~~~~~pilgiC~G~q 92 (188)
T cd01741 70 LKELIRQALAAGKPVLGICLGHQ 92 (188)
T ss_pred HHHHHHHHHHCCCCEEEECccHH
Confidence 45566666667899999888773
No 237
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=22.22 E-value=1.6e+02 Score=24.20 Aligned_cols=40 Identities=10% Similarity=0.114 Sum_probs=29.2
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~ 56 (243)
.+-++.| .+.+|......+.+.+.++.++.... +|+++..
T Consensus 169 vlllDEP----~~~LD~~~~~~l~~~l~~~~~~~~~t-ii~vsH~ 208 (253)
T TIGR02323 169 LVFMDEP----TGGLDVSVQARLLDLLRGLVRDLGLA-VIIVTHD 208 (253)
T ss_pred EEEEcCC----CccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCC
Confidence 3556665 69999999999999999886543443 6666653
No 238
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=22.06 E-value=3e+02 Score=23.70 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEE
Q 041046 28 PSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAV 107 (243)
Q Consensus 28 ~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v 107 (243)
.++-+.+.+.+++.. |+ ++|+||...+--...|+..+.+. ...+.|.+..+..-+-..+.+.-+|-|
T Consensus 139 ~eqp~~i~~Ll~~~~--PD---IlViTGHD~~~K~~~d~~dl~~Y-------rnSkyFVeaVk~aR~y~~~~D~LVIFA- 205 (283)
T TIGR02855 139 KEMPEKVLDLIEEVR--PD---ILVITGHDAYSKNKGNYMDLNAY-------RHSKYFVETVREARKYVPSLDQLVIFA- 205 (283)
T ss_pred hhchHHHHHHHHHhC--CC---EEEEeCchhhhcCCCChhhhhhh-------hhhHHHHHHHHHHHhcCCCcccEEEEc-
Confidence 345566666777665 54 89999976555555777776652 222333444444333333556666643
Q ss_pred Ccccc
Q 041046 108 NGHAA 112 (243)
Q Consensus 108 ~G~a~ 112 (243)
|.|-
T Consensus 206 -GACQ 209 (283)
T TIGR02855 206 -GACQ 209 (283)
T ss_pred -chhH
Confidence 4443
No 239
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=22.06 E-value=1.8e+02 Score=23.46 Aligned_cols=40 Identities=25% Similarity=0.301 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~ 56 (243)
.+-++.| .+.+|.....++.+.+.++.++.... +|++|..
T Consensus 152 illlDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~sH~ 191 (230)
T TIGR03410 152 LLLLDEP----TEGIQPSIIKDIGRVIRRLRAEGGMA-ILLVEQY 191 (230)
T ss_pred EEEecCC----cccCCHHHHHHHHHHHHHHHHcCCcE-EEEEeCC
Confidence 3556665 69999999999999999987643333 5666553
No 240
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=21.83 E-value=1.6e+02 Score=24.42 Aligned_cols=40 Identities=8% Similarity=0.170 Sum_probs=29.9
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~ 56 (243)
.|-++.| .+.+|....+.+.+.+.++.++.... +|++|..
T Consensus 173 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~g~t-vii~tH~ 212 (262)
T PRK09984 173 VILADEP----IASLDPESARIVMDTLRDINQNDGIT-VVVTLHQ 212 (262)
T ss_pred EEEecCc----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCC
Confidence 4566665 69999999999999999997643433 6666654
No 241
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.62 E-value=1.8e+02 Score=23.65 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++.++.... +|++|.
T Consensus 161 lllLDEP----~~~LD~~~~~~l~~~l~~~~~~~~~t-vii~sH 199 (233)
T cd03258 161 VLLCDEA----TSALDPETTQSILALLRDINRELGLT-IVLITH 199 (233)
T ss_pred EEEecCC----CCcCCHHHHHHHHHHHHHHHHHcCCE-EEEEeC
Confidence 4556765 69999999999999999987643332 566654
No 242
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=21.57 E-value=1.7e+02 Score=24.57 Aligned_cols=39 Identities=8% Similarity=0.077 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++.+..... +|++|.
T Consensus 170 lllLDEP----t~~LD~~~~~~l~~~l~~~~~~~g~t-viivsH 208 (267)
T PRK15112 170 VIIADEA----LASLDMSMRSQLINLMLELQEKQGIS-YIYVTQ 208 (267)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHHcCcE-EEEEeC
Confidence 4566765 69999999999999999987643333 566655
No 243
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=21.55 E-value=3.1e+02 Score=19.61 Aligned_cols=50 Identities=8% Similarity=0.189 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEECccc
Q 041046 32 DSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHA 111 (243)
Q Consensus 32 ~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a 111 (243)
++..+.++.+. ++++. +|++|- .+.+.+.+.+........|+|-.+-+.-
T Consensus 32 ee~~~~i~~l~-~~d~g-II~Ite----------------------------~~a~~i~~~i~~~~~~~~P~Il~IP~~~ 81 (104)
T PRK01395 32 QEAINTLRKLA-MEDYG-IIYITE----------------------------QIAADIPETIERYDNQVLPAIILIPSNQ 81 (104)
T ss_pred HHHHHHHHHHh-cCCcE-EEEEcH----------------------------HHHHHhHHHHHHhcCCCCCEEEEeCCCC
Confidence 55666777776 66776 777752 1122344455555567999999997743
No 244
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=21.54 E-value=1.7e+02 Score=24.34 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++.+..... +|++|.
T Consensus 149 lllLDEP----t~~LD~~~~~~l~~~L~~~~~~~g~t-viivsH 187 (255)
T PRK11248 149 LLLLDEP----FGALDAFTREQMQTLLLKLWQETGKQ-VLLITH 187 (255)
T ss_pred EEEEeCC----CccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 4566665 69999999999999999985433332 566654
No 245
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=21.40 E-value=1.6e+02 Score=25.99 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=30.7
Q ss_pred EEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Q 041046 13 LTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 13 i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~ 56 (243)
+-++.| .+++|+....++.+.+.++.++..+. +|++|..
T Consensus 162 LLlDEP----ts~LD~~t~~~i~~lL~~l~~~~g~t-iiliTH~ 200 (343)
T TIGR02314 162 LLCDEA----TSALDPATTQSILELLKEINRRLGLT-ILLITHE 200 (343)
T ss_pred EEEeCC----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCC
Confidence 455654 69999999999999999998765555 7777764
No 246
>KOG3985 consensus Methylthioadenosine phosphorylase MTAP [Nucleotide transport and metabolism]
Probab=21.39 E-value=2.1e+02 Score=23.96 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=38.0
Q ss_pred eEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCC
Q 041046 5 EKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGL 64 (243)
Q Consensus 5 ~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~ 64 (243)
+..++|.+|.+-.| ++..+.+-|.+.-+++..--.-+ ..+++-.|.-||+-+
T Consensus 130 ~~a~gVcHv~~~~p-------f~~k~reil~~~a~~l~~~~hd~-~tvVciEGPrFStRA 181 (283)
T KOG3985|consen 130 DQAGGVCHVPFGPP-------FSQKLREILISTAKELTNPHHDD-GTVVCIEGPRFSTRA 181 (283)
T ss_pred cCCCceEeccCCCC-------cCHHHHHHHHHHHHHhcCCcCCc-eeEEEeeCCccchHH
Confidence 34578999998876 88888888888888887522224 566677788898844
No 247
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=21.38 E-value=1.9e+02 Score=23.86 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~ 56 (243)
.+-++.| .+.+|......+.+.+.++.+..... +|++|..
T Consensus 174 llllDEP----t~~LD~~~~~~l~~~L~~~~~~~~~t-ii~~sH~ 213 (255)
T PRK11300 174 ILMLDEP----AAGLNPKETKELDELIAELRNEHNVT-VLLIEHD 213 (255)
T ss_pred EEEEcCC----ccCCCHHHHHHHHHHHHHHHhhcCCE-EEEEeCC
Confidence 3556655 79999999999999999987643433 6666653
No 248
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=21.37 E-value=2e+02 Score=22.83 Aligned_cols=38 Identities=11% Similarity=0.183 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .+.+|....+.+.+.+.++.+. ... ++++|.
T Consensus 147 llllDEP----t~~LD~~~~~~l~~~l~~~~~~-~~t-ii~~sH 184 (205)
T cd03226 147 LLIFDEP----TSGLDYKNMERVGELIRELAAQ-GKA-VIVITH 184 (205)
T ss_pred EEEEeCC----CccCCHHHHHHHHHHHHHHHHC-CCE-EEEEeC
Confidence 4556665 6999999999999999998654 332 555554
No 249
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.21 E-value=1.7e+02 Score=23.78 Aligned_cols=39 Identities=5% Similarity=0.201 Sum_probs=28.8
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++.++.... +|++|.
T Consensus 165 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~tH 203 (241)
T cd03256 165 LILADEP----VASLDPASSRQVMDLLKRINREEGIT-VIVSLH 203 (241)
T ss_pred EEEEeCc----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 3556665 69999999999999999987543433 666665
No 250
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=21.15 E-value=4.6e+02 Score=21.37 Aligned_cols=31 Identities=13% Similarity=0.181 Sum_probs=22.9
Q ss_pred CCCCC---HHHHHHHHHHHHHHHhCCCCCeEEEEecC
Q 041046 23 EHRFG---PSAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 23 ~N~~~---~~~~~~l~~~l~~~~~d~~i~~vvvl~g~ 56 (243)
.|.+. .+..+++.+.++++..+++ +||++|.
T Consensus 17 ~~~~g~~~~~~~~~i~~~~~~~~~~~D---~viiaGD 50 (232)
T cd07393 17 MDVFGPEWKNHTEKIKENWDNVVAPED---IVLIPGD 50 (232)
T ss_pred CcccCccHHHHHHHHHHHHHhcCCCCC---EEEEcCC
Confidence 45566 5788888888888875454 8999874
No 251
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.14 E-value=1.8e+02 Score=23.77 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=29.4
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~ 56 (243)
.+-++.| .+.+|......+.+.+.++.++.... +|++|..
T Consensus 157 llllDEP----~~~LD~~~~~~l~~~l~~~~~~~~~t-vii~sH~ 196 (239)
T cd03296 157 VLLLDEP----FGALDAKVRKELRRWLRRLHDELHVT-TVFVTHD 196 (239)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHHcCCE-EEEEeCC
Confidence 4566665 69999999999999999987643433 6666653
No 252
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=21.12 E-value=1.7e+02 Score=25.53 Aligned_cols=40 Identities=10% Similarity=0.251 Sum_probs=30.8
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~ 56 (243)
.|-++.| .+++|.....++.+.|.++.++.... +|++|..
T Consensus 179 llilDEP----ts~LD~~~~~~i~~lL~~l~~~~g~t-ii~itHd 218 (330)
T PRK15093 179 LLIADEP----TNAMEPTTQAQIFRLLTRLNQNNNTT-ILLISHD 218 (330)
T ss_pred EEEEeCC----CCcCCHHHHHHHHHHHHHHHHhcCCE-EEEEECC
Confidence 3556654 69999999999999999998754554 7777764
No 253
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.05 E-value=1.6e+02 Score=24.37 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=26.5
Q ss_pred HHhHHHHHHHHhcCC--CcEEEEECcccchhHHHHHHhccE
Q 041046 86 VESFRPVVAAMMDLP--MPTVAAVNGHAAAAGFTLALSHDY 124 (243)
Q Consensus 86 ~~~~~~~~~~l~~~~--kp~Ia~v~G~a~G~G~~la~~~D~ 124 (243)
.......+..+...+ .+.=..+-|+|+||++.+.+++..
T Consensus 93 ~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~ 133 (236)
T COG0412 93 LADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRA 133 (236)
T ss_pred HHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhccc
Confidence 344555555555555 333244779999999999999987
No 254
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.05 E-value=1.7e+02 Score=23.91 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=29.0
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~ 56 (243)
.+-++.| .+.+|......+.+.+.++.++.... +|++|..
T Consensus 156 llllDEP----t~~LD~~~~~~l~~~L~~~~~~~g~t-vii~sH~ 195 (242)
T cd03295 156 LLLMDEP----FGALDPITRDQLQEEFKRLQQELGKT-IVFVTHD 195 (242)
T ss_pred EEEecCC----cccCCHHHHHHHHHHHHHHHHHcCCE-EEEEecC
Confidence 3556665 69999999999999999987643332 5666553
No 255
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=21.05 E-value=2e+02 Score=23.20 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~ 56 (243)
.+-++.| .+.+|......+.+.+.++... ... +++++..
T Consensus 170 llllDEP----t~~LD~~~~~~l~~~l~~~~~~-g~t-ii~vsH~ 208 (224)
T TIGR02324 170 ILLLDEP----TASLDAANRQVVVELIAEAKAR-GAA-LIGIFHD 208 (224)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHhc-CCE-EEEEeCC
Confidence 4556665 6999999999999999998654 433 5666553
No 256
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.02 E-value=1.9e+02 Score=23.55 Aligned_cols=40 Identities=13% Similarity=0.059 Sum_probs=29.3
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~ 56 (243)
.+-++.| .+.+|......+.+.+.++.++.... +++++..
T Consensus 151 llllDEP----~~gLD~~~~~~l~~~l~~~~~~~~~t-iii~sh~ 190 (232)
T cd03300 151 VLLLDEP----LGALDLKLRKDMQLELKRLQKELGIT-FVFVTHD 190 (232)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHHcCCE-EEEEeCC
Confidence 3556665 69999999999999999987643433 6666553
No 257
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=20.90 E-value=1.8e+02 Score=23.77 Aligned_cols=40 Identities=8% Similarity=0.184 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~ 56 (243)
.+-++.| .+.+|......+.+.+.++.++.... +|++|..
T Consensus 166 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-iii~tH~ 205 (243)
T TIGR02315 166 LILADEP----IASLDPKTSKQVMDYLKRINKEDGIT-VIINLHQ 205 (243)
T ss_pred EEEEeCC----cccCCHHHHHHHHHHHHHHHHHcCCE-EEEEeCC
Confidence 3556665 68999999999999999986543333 6666653
No 258
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=20.87 E-value=1.4e+02 Score=23.63 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=31.1
Q ss_pred CEEEEEEcCCCCCCCC----CCCHHHHHHHHH----HHHHHHhCCCCCeEEEEecCCCccccCCCh
Q 041046 9 DVFVLTLTGSSDVDEH----RFGPSAIDSILS----AIAKAKAEATPGSALITTSHGKFFSNGLDL 66 (243)
Q Consensus 9 ~v~~i~ln~p~~~~~N----~~~~~~~~~l~~----~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl 66 (243)
|...|+++.| +.| .|+.+-+..+.. .+..+.+++.+++++++...| +-+|+.+
T Consensus 109 G~hEViIe~p---~h~~~~~~~~~~~~~~i~~a~~~r~~~l~~~~~~~yv~~FeN~G--~~~GaSl 169 (183)
T PF01087_consen 109 GAHEVIIESP---KHERTLADMSVKEIKEILKAWRDRYRELSSDKYIKYVLIFENEG--YEAGASL 169 (183)
T ss_dssp EEEEEEES-S---STT--GGGS-HHHHHHHHHHHHHHHHHHCT-TT-SEEEEEEEES--GGGT-SS
T ss_pred CCeEEEEeCC---CCCCChhhCCHHHHHHHHHHHHHHHHHHhccCCcceEEEEEecC--CcCCCCC
Confidence 5678999999 555 466555544444 466666788999888887655 3344443
No 259
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=20.86 E-value=2e+02 Score=22.73 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=28.8
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~ 56 (243)
.+-++.| .+.+|....+.+.+.+.++.++ ... +|+++..
T Consensus 155 llllDEP----t~~LD~~~~~~l~~~l~~~~~~-~~t-ii~~sh~ 193 (206)
T TIGR03608 155 LILADEP----TGSLDPKNRDEVLDLLLELNDE-GKT-IIIVTHD 193 (206)
T ss_pred EEEEeCC----cCCCCHHHHHHHHHHHHHHHhc-CCE-EEEEeCC
Confidence 4566665 6899999999999999998754 333 5666553
No 260
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=20.74 E-value=1.8e+02 Score=24.09 Aligned_cols=40 Identities=13% Similarity=0.113 Sum_probs=29.2
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~ 56 (243)
.+-++.| .+.+|.....++.+.+.++.++.... +|++|..
T Consensus 172 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-ii~isH~ 211 (258)
T PRK11701 172 LVFMDEP----TGGLDVSVQARLLDLLRGLVRELGLA-VVIVTHD 211 (258)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHhcCcE-EEEEeCC
Confidence 4566665 69999999999999999987643433 6666653
No 261
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=20.72 E-value=2e+02 Score=22.20 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .+.+|.....++.+.+.++.+. ... +++++.
T Consensus 117 ~lllDEP----t~~LD~~~~~~l~~~l~~~~~~-~~t-ii~~sh 154 (173)
T cd03246 117 ILVLDEP----NSHLDVEGERALNQAIAALKAA-GAT-RIVIAH 154 (173)
T ss_pred EEEEECC----ccccCHHHHHHHHHHHHHHHhC-CCE-EEEEeC
Confidence 3556665 6999999999999999998754 333 566654
No 262
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=20.66 E-value=1.9e+02 Score=23.45 Aligned_cols=41 Identities=20% Similarity=0.131 Sum_probs=29.9
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG 57 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g 57 (243)
.+-++.| .+.+|......+.+.+.++.++.... +|+++...
T Consensus 158 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-vii~sh~~ 198 (225)
T PRK10247 158 VLLLDEI----TSALDESNKHNVNEIIHRYVREQNIA-VLWVTHDK 198 (225)
T ss_pred EEEEeCC----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEECCh
Confidence 3556665 69999999999999999987643433 66666543
No 263
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.52 E-value=2.1e+02 Score=22.21 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++.++.... +++++.
T Consensus 121 llilDEP----~~~LD~~~~~~l~~~l~~~~~~~~~t-iii~sH 159 (178)
T cd03229 121 VLLLDEP----TSALDPITRREVRALLKSLQAQLGIT-VVLVTH 159 (178)
T ss_pred EEEEeCC----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 4556665 69999999999999999987652332 556654
No 264
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=20.38 E-value=2.7e+02 Score=21.98 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=32.4
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChh
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLA 67 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~ 67 (243)
.+-++.| .+.+|....+.+.+.+.++.++ ... +|+++.. ..|-.-.|..
T Consensus 148 ~lilDEP----~~~LD~~~~~~l~~~l~~~~~~-~~t-iii~sh~-~~~~~~~d~~ 196 (200)
T PRK13540 148 LWLLDEP----LVALDELSLLTIITKIQEHRAK-GGA-VLLTSHQ-DLPLNKADYE 196 (200)
T ss_pred EEEEeCC----CcccCHHHHHHHHHHHHHHHHc-CCE-EEEEeCC-chhccccchh
Confidence 4556665 6899999999999999998654 322 5555544 4343445543
No 265
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=20.24 E-value=1.8e+02 Score=24.94 Aligned_cols=38 Identities=13% Similarity=0.254 Sum_probs=29.2
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g 55 (243)
.+-++.| .|.+|+....++.+.+..+.++... .|++++
T Consensus 157 lliLDEP----t~GLDp~~~~~~~~~l~~l~~~g~~--tvliss 194 (293)
T COG1131 157 LLILDEP----TSGLDPESRREIWELLRELAKEGGV--TILLST 194 (293)
T ss_pred EEEECCC----CcCCCHHHHHHHHHHHHHHHhCCCc--EEEEeC
Confidence 3556665 7999999999999999999987653 455543
No 266
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=20.23 E-value=2.5e+02 Score=21.72 Aligned_cols=41 Identities=12% Similarity=0.069 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEec
Q 041046 89 FRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRR 129 (243)
Q Consensus 89 ~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~ 129 (243)
+.+.+..+....+--|+.+=|.+.|..=++.-.||.+++-.
T Consensus 85 fA~~l~~~~~~g~~~i~F~IGG~~G~~~~~~~~a~~~lSLS 125 (155)
T PF02590_consen 85 FAKKLERWMNQGKSDIVFIIGGADGLSEEVRKRADEKLSLS 125 (155)
T ss_dssp HHHHHHHHHHTTS-EEEEEE-BTTB--HHHHHH-SEEEES-
T ss_pred HHHHHHHHHhcCCceEEEEEecCCCCCHHHHhhcCceEEEe
Confidence 45555666677887888888888999889999999999853
No 267
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=20.05 E-value=2.1e+02 Score=23.35 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Q 041046 12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG 57 (243)
Q Consensus 12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g 57 (243)
.+-++.| .+.+|....+.+.+.+.++.+....- +|++|...
T Consensus 153 llllDEP----~~~LD~~~~~~l~~~l~~~~~~~~~t-iii~sH~~ 193 (236)
T TIGR03864 153 LLLLDEP----TVGLDPASRAAIVAHVRALCRDQGLS-VLWATHLV 193 (236)
T ss_pred EEEEcCC----ccCCCHHHHHHHHHHHHHHHHhCCCE-EEEEecCh
Confidence 3556665 69999999999999999987533333 66666543
Done!