Query 041048
Match_columns 335
No_of_seqs 167 out of 898
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 04:50:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4i1k_A B3 domain-containing tr 100.0 6.5E-34 2.2E-38 238.5 16.6 125 205-330 21-145 (146)
2 1yel_A AT1G16640; CESG, protei 99.9 1.3E-27 4.6E-32 189.4 12.5 99 3-102 6-104 (104)
3 1yel_A AT1G16640; CESG, protei 99.9 1.4E-24 4.7E-29 172.0 12.0 99 226-328 4-102 (104)
4 1wid_A DNA-binding protein RAV 99.8 3.2E-20 1.1E-24 152.6 13.5 104 227-330 8-120 (130)
5 4i1k_A B3 domain-containing tr 99.8 1.2E-19 4.1E-24 151.8 13.6 96 4-100 45-143 (146)
6 1wid_A DNA-binding protein RAV 99.6 7.1E-15 2.4E-19 120.6 11.1 95 3-97 9-115 (130)
7 2glw_A PHS018, 92AA long hypot 59.0 38 0.0013 25.0 7.1 69 20-91 15-89 (92)
8 2cbp_A Cucumber basic protein; 57.6 6.1 0.00021 29.6 2.5 27 296-322 18-44 (96)
9 1x9u_A Umecyanin; cupredoxin, 54.5 5.8 0.0002 30.8 2.0 28 295-322 23-50 (116)
10 2d9r_A Conserved hypothetical 48.0 70 0.0024 24.1 7.2 78 232-313 23-102 (104)
11 1f56_A Plantacyanin; cupredoxi 43.1 15 0.00052 27.0 2.7 28 295-322 12-39 (91)
12 1ws8_A Mavicyanin; oxidized fo 42.6 18 0.00062 27.6 3.1 29 294-322 22-50 (109)
13 2l66_A SSO7C4, transcriptional 40.6 27 0.00093 22.7 3.4 23 68-90 18-40 (53)
14 1yfb_A Transition state regula 40.3 49 0.0017 22.2 4.7 28 59-89 22-49 (59)
15 1x9u_A Umecyanin; cupredoxin, 40.1 6.6 0.00022 30.5 0.2 21 69-89 23-43 (116)
16 2cbp_A Cucumber basic protein; 38.7 7.4 0.00025 29.1 0.3 24 71-94 19-44 (96)
17 1ws8_A Mavicyanin; oxidized fo 37.1 26 0.00088 26.7 3.2 22 68-89 22-43 (109)
18 1jer_A Cucumber stellacyanin; 33.3 15 0.00053 29.3 1.4 29 294-322 24-52 (138)
19 3o27_A Putative uncharacterize 31.4 51 0.0017 22.8 3.5 25 245-269 24-48 (68)
20 1jer_A Cucumber stellacyanin; 24.6 22 0.00075 28.4 0.9 22 68-89 24-45 (138)
21 2l55_A SILB,silver efflux prot 23.7 1.3E+02 0.0046 21.4 4.9 28 299-326 45-72 (82)
No 1
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=6.5e-34 Score=238.51 Aligned_cols=125 Identities=54% Similarity=1.010 Sum_probs=113.6
Q ss_pred ccccccCCHHHHHHHHHHHhhcCCCCCeEEEEccCcccCCCceeecCHHHHHhhcCCCCeeEEEEeCCCCeEEEEEEEeC
Q 041048 205 GLRWRAVTTEEKKRTVHAAEMYKSSNPLFRVILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKN 284 (335)
Q Consensus 205 ~~r~~~~t~~e~~~a~~~a~~~~~~~p~F~~~m~~s~v~~~~~L~iP~~F~~~~l~~~~~~i~L~~~~G~~W~v~~~~~~ 284 (335)
+++++++|.+|+++|+++|++|+|++|+|+++|++|++++++.|.||.+|++.|+|....+|+|+++ |+.|+|++.+.+
T Consensus 21 ~~~r~~~t~~~k~~a~~~A~~~~s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~~~i~L~~~-gk~W~v~~~~~~ 99 (146)
T 4i1k_A 21 SARKRTVTAEERERAINAAKTFEPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLA-EKQWPVRCLYKA 99 (146)
T ss_dssp -----CCCHHHHHHHHHHHHHCCCSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCCSEEEEEET-TEEEEEEEEEET
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCCeEEEEEEC-CcEEEEEEEEeC
Confidence 5678899999999999999999999999999999999998878999999999999998999999999 599999998888
Q ss_pred CeeeeccChhHhhhhcCCCCCCEEEEEEecCCCcEEEEEEEeeCCC
Q 041048 285 GGAKFSKGWPEFVWENNLDESDVCVFELIKSNDVTLKATIFRVLED 330 (335)
Q Consensus 285 ~~~~l~~GW~~F~~~n~L~~GD~cvFel~~~~~~~~~V~Ifr~~~~ 330 (335)
++..|++||.+||++|+|++||+|+|||+++.+++|+|||||++++
T Consensus 100 ~~~~ls~GW~~Fv~dn~L~~GD~cvFeli~~~~~~f~V~IfR~~e~ 145 (146)
T 4i1k_A 100 GRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRVNEY 145 (146)
T ss_dssp TEEEECTTHHHHHHHTTCCTTCEEEEEECSSSSCEEEEEEECCC--
T ss_pred CcEEECCchHHHHHHcCCCCCCEEEEEEecCCceEEEEEEEeccCC
Confidence 8899999999999999999999999999998888999999999986
No 2
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.95 E-value=1.3e-27 Score=189.43 Aligned_cols=99 Identities=25% Similarity=0.518 Sum_probs=93.7
Q ss_pred CccccEEEEcccCcccCceEecchHHHHhhCCCCCceEEEEcCCCCEEEEEEEEeCCeEEEcccHHHHHhHcCCCCCcEE
Q 041048 3 KRSCIFYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGWHEFIEHCSIHSGYFL 82 (335)
Q Consensus 3 ~~~~~Ffk~~~~~~~~~~~l~IP~~F~~~~~~~~~~~v~L~~~~g~~W~V~l~~~~~~~~~~~GW~~F~~~~~L~~Gd~l 82 (335)
...|+|||++++++. ...|.||..|+++|.+.++..|+|++++|++|+|.+.+.++.++|++||++||.+|+|++||+|
T Consensus 6 ~~~p~F~K~l~~~~~-~~~L~IP~~F~~~~~~~~~~~v~L~~~~G~~W~v~~~~~~~~~~l~~GW~~Fv~~~~L~~GD~l 84 (104)
T 1yel_A 6 TGEVQFMKPFISEKS-SKSLEIPLGFNEYFPAPFPITVDLLDYSGRSWTVRMKKRGEKVFLTVGWENFVKDNNLEDGKYL 84 (104)
T ss_dssp CCCEEEEEECCHHHH-TTCEECCHHHHTTCCCCCCSEEEEEETTSCEEEEEEEEETTEEEECTTHHHHHHHHTCCTTCEE
T ss_pred CCCCCEEEEECCCCc-cceEECCHHHHHhcCccCCCEEEEECCCCCEEEEEEEEECCcEEEccChHHHHHHcCCCCCCEE
Confidence 356899999998874 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccceEEEEEEeCCcc
Q 041048 83 IFKYQGNSNFNVYIFDLAIS 102 (335)
Q Consensus 83 vF~~~g~~~F~V~if~~~~~ 102 (335)
+|+|++++.|.|.||++++|
T Consensus 85 vF~~~~~~~f~V~If~~s~C 104 (104)
T 1yel_A 85 QFIYDRDRTFYVIIYGHNMC 104 (104)
T ss_dssp EEEECSSSEEEEEEECSSCC
T ss_pred EEEEcCCCeEEEEEECCCCC
Confidence 99999999999999999987
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.92 E-value=1.4e-24 Score=172.04 Aligned_cols=99 Identities=19% Similarity=0.333 Sum_probs=90.6
Q ss_pred cCCCCCeEEEEccCcccCCCceeecCHHHHHhhcCCCCeeEEEEeCCCCeEEEEEEEeCCeeeeccChhHhhhhcCCCCC
Q 041048 226 YKSSNPLFRVILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKNGGAKFSKGWPEFVWENNLDES 305 (335)
Q Consensus 226 ~~~~~p~F~~~m~~s~v~~~~~L~iP~~F~~~~l~~~~~~i~L~~~~G~~W~v~~~~~~~~~~l~~GW~~F~~~n~L~~G 305 (335)
..+.+|.|.++|.+++. ...|.||.+|++.|++....+|+|++++|+.|+|++....++.+|++||++||++|+|++|
T Consensus 4 ~~~~~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~~~~v~L~~~~G~~W~v~~~~~~~~~~l~~GW~~Fv~~~~L~~G 81 (104)
T 1yel_A 4 ADTGEVQFMKPFISEKS--SKSLEIPLGFNEYFPAPFPITVDLLDYSGRSWTVRMKKRGEKVFLTVGWENFVKDNNLEDG 81 (104)
T ss_dssp CCCCCEEEEEECCHHHH--TTCEECCHHHHTTCCCCCCSEEEEEETTSCEEEEEEEEETTEEEECTTHHHHHHHHTCCTT
T ss_pred CCCCCCCEEEEECCCCc--cceEECCHHHHHhcCccCCCEEEEECCCCCEEEEEEEEECCcEEEccChHHHHHHcCCCCC
Confidence 35788999999999873 3589999999999988888999999999999999998877889999999999999999999
Q ss_pred CEEEEEEecCCCcEEEEEEEeeC
Q 041048 306 DVCVFELIKSNDVTLKATIFRVL 328 (335)
Q Consensus 306 D~cvFel~~~~~~~~~V~Ifr~~ 328 (335)
|+|+|+++++. .|+|+||+..
T Consensus 82 D~lvF~~~~~~--~f~V~If~~s 102 (104)
T 1yel_A 82 KYLQFIYDRDR--TFYVIIYGHN 102 (104)
T ss_dssp CEEEEEECSSS--EEEEEEECSS
T ss_pred CEEEEEEcCCC--eEEEEEECCC
Confidence 99999999887 8999999964
No 4
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.84 E-value=3.2e-20 Score=152.57 Aligned_cols=104 Identities=29% Similarity=0.369 Sum_probs=90.9
Q ss_pred CCCCCeEEEEccCcccCCCceeecCHHHHHhhcCCCC-------eeEEEEeCCCCeEEEEEEEeC--CeeeeccChhHhh
Q 041048 227 KSSNPLFRVILRPSYVYRTLLLHVPTSFARKYLNGIK-------GYITIIDSNGKQWPVRCIFKN--GGAKFSKGWPEFV 297 (335)
Q Consensus 227 ~~~~p~F~~~m~~s~v~~~~~L~iP~~F~~~~l~~~~-------~~i~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~F~ 297 (335)
.+..|.|.++|++|++.....|.||++|++.|||... .+|+|+|.+|+.|.+++.+.+ .++.|++||..||
T Consensus 8 ~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV 87 (130)
T 1wid_A 8 RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFV 87 (130)
T ss_dssp CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHH
T ss_pred CCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHH
Confidence 3567899999999999876789999999999998755 478999999999999998754 4678999999999
Q ss_pred hhcCCCCCCEEEEEEecCCCcEEEEEEEeeCCC
Q 041048 298 WENNLDESDVCVFELIKSNDVTLKATIFRVLED 330 (335)
Q Consensus 298 ~~n~L~~GD~cvFel~~~~~~~~~V~Ifr~~~~ 330 (335)
++|+|++||+|+|++..+.+..+.|.+.|..+.
T Consensus 88 ~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~ 120 (130)
T 1wid_A 88 KEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS 120 (130)
T ss_dssp HHTTCCTTCEEEEEECCSSSCCEEEEEECCCSC
T ss_pred HHcCCCCCCEEEEEEecCCCcEEEEEEEECCCC
Confidence 999999999999999986656788899888643
No 5
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.82 E-value=1.2e-19 Score=151.77 Aligned_cols=96 Identities=21% Similarity=0.360 Sum_probs=87.4
Q ss_pred ccccEEEEcccCcccCc-eEecchHHHHhhCCCCCceEEEEcCCCCEEEEEEEEeCCeEEEcccHHHHHhHcCCCCCcEE
Q 041048 4 RSCIFYKLIVPSILQDK-KLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGWHEFIEHCSIHSGYFL 82 (335)
Q Consensus 4 ~~~~Ffk~~~~~~~~~~-~l~IP~~F~~~~~~~~~~~v~L~~~~g~~W~V~l~~~~~~~~~~~GW~~F~~~~~L~~Gd~l 82 (335)
..|.|.++|+++++... .|.||..|++.|.+.....|+|+++ |+.|.|.+...++..+|++||.+||.+|+|++||+|
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~~~i~L~~~-gk~W~v~~~~~~~~~~ls~GW~~Fv~dn~L~~GD~c 123 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLA-EKQWPVRCLYKAGRAKFSQGWYEFTLENNLGEGDVC 123 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCCSEEEEEET-TEEEEEEEEEETTEEEECTTHHHHHHHTTCCTTCEE
T ss_pred CCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCCeEEEEEEC-CcEEEEEEEEeCCcEEECCchHHHHHHcCCCCCCEE
Confidence 46899999999998543 6999999999999988999999999 599999999888899999999999999999999999
Q ss_pred EEEEcccc--eEEEEEEeCC
Q 041048 83 IFKYQGNS--NFNVYIFDLA 100 (335)
Q Consensus 83 vF~~~g~~--~F~V~if~~~ 100 (335)
+|+|+++. .|.|.||...
T Consensus 124 vFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 124 VFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp EEEECSSSSCEEEEEEECCC
T ss_pred EEEEecCCceEEEEEEEecc
Confidence 99999975 7999999653
No 6
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.59 E-value=7.1e-15 Score=120.57 Aligned_cols=95 Identities=19% Similarity=0.339 Sum_probs=79.6
Q ss_pred CccccEEEEcccCccc-CceEecchHHHHhhCCCCC-------ceEEEEcCCCCEEEEEEEEeC--CeEEEcccHHHHHh
Q 041048 3 KRSCIFYKLIVPSILQ-DKKLRIPDKFVQKFGDELS-------SIAKFTIPSGRMWFVELKKCN--KQLWFDIGWHEFIE 72 (335)
Q Consensus 3 ~~~~~Ffk~~~~~~~~-~~~l~IP~~F~~~~~~~~~-------~~v~L~~~~g~~W~V~l~~~~--~~~~~~~GW~~F~~ 72 (335)
.+.+.|.|+|+++++. ...|.||..|++.|.+.+. ..++|+|+.|+.|++.+...+ ...+|+.||..||+
T Consensus 9 ~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV~ 88 (130)
T 1wid_A 9 SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVK 88 (130)
T ss_dssp CCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHH
T ss_pred CCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHHH
Confidence 3556899999999884 2689999999999887554 468899999999999998764 57889999999999
Q ss_pred HcCCCCCcEEEEEEccc--ceEEEEEE
Q 041048 73 HCSIHSGYFLIFKYQGN--SNFNVYIF 97 (335)
Q Consensus 73 ~~~L~~Gd~lvF~~~g~--~~F~V~if 97 (335)
+|+|++||+|+|.++.+ .++.|-+.
T Consensus 89 ~~~L~~GD~~~F~~~~~~~~~l~I~~r 115 (130)
T 1wid_A 89 EKNLRAGDVVSFSRSNGQDQQLYIGWK 115 (130)
T ss_dssp HTTCCTTCEEEEEECCSSSCCEEEEEE
T ss_pred HcCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 99999999999999874 45555554
No 7
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=59.04 E-value=38 Score=24.98 Aligned_cols=69 Identities=12% Similarity=0.111 Sum_probs=48.2
Q ss_pred ceEecchHHHHhhCCCCCceEEEEc---CCCC-EEEEEEEEe--CCeEEEcccHHHHHhHcCCCCCcEEEEEEcccce
Q 041048 20 KKLRIPDKFVQKFGDELSSIAKFTI---PSGR-MWFVELKKC--NKQLWFDIGWHEFIEHCSIHSGYFLIFKYQGNSN 91 (335)
Q Consensus 20 ~~l~IP~~F~~~~~~~~~~~v~L~~---~~g~-~W~V~l~~~--~~~~~~~~GW~~F~~~~~L~~Gd~lvF~~~g~~~ 91 (335)
.++.||..+-+.++-.....|.+.. .+|. .......+. .|++.+- ++..+..+|+.||.|.|...+..+
T Consensus 15 gqvtiP~~iR~~LgI~~GD~V~v~~i~~~~g~~~~~~~~~~v~~kGqitIP---keiR~~lgi~~Gd~l~~~~~~~~~ 89 (92)
T 2glw_A 15 GRIIIPAGTRKFYGIEQGDFVEIKIVKYEGEEPKEGTFTARVGEQGSVIIP---KALRDVIGIKPGEVIEVLLLGHYK 89 (92)
T ss_dssp GEEECCHHHHHHHTCCTTCEEEEEEEEEETTEEEEEEEEEECCGGGEEECC---HHHHHHHTCCTTCEEEEEEEEEEC
T ss_pred CEEEecHHHHHHcCCCCCCEEEEEEEEecCCccceeEEEEEECcCceEECc---HHHHHHcCCCCCCEEEEEEeCcEE
Confidence 6899999999999877777776621 3333 222222222 3667766 488999999999999999876543
No 8
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=57.59 E-value=6.1 Score=29.56 Aligned_cols=27 Identities=11% Similarity=0.147 Sum_probs=20.1
Q ss_pred hhhhcCCCCCCEEEEEEecCCCcEEEE
Q 041048 296 FVWENNLDESDVCVFELIKSNDVTLKA 322 (335)
Q Consensus 296 F~~~n~L~~GD~cvFel~~~~~~~~~V 322 (335)
-+..+..++||+++|++.....-++.|
T Consensus 18 Wa~~~~f~vGD~L~F~y~~~~hsV~~v 44 (96)
T 2cbp_A 18 WPKGKRFRAGDILLFNYNPSMHNVVVV 44 (96)
T ss_dssp TTTTCCBCTTCEEEEECCTTTCCEEEE
T ss_pred hccCceEcCCCEEEEEecCCCCEEEEE
Confidence 367789999999999998654334444
No 9
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=54.55 E-value=5.8 Score=30.84 Aligned_cols=28 Identities=7% Similarity=0.045 Sum_probs=20.8
Q ss_pred HhhhhcCCCCCCEEEEEEecCCCcEEEE
Q 041048 295 EFVWENNLDESDVCVFELIKSNDVTLKA 322 (335)
Q Consensus 295 ~F~~~n~L~~GD~cvFel~~~~~~~~~V 322 (335)
.-+..+..++||+++|++.....-++.|
T Consensus 23 ~Wa~~~~f~vGD~L~F~y~~~~HsV~~V 50 (116)
T 1x9u_A 23 TWATGKTFRVGDELEFDFAAGMHDVAVV 50 (116)
T ss_dssp HHHTTCCEETTCEEEECCCTTTCCEEEE
T ss_pred hccccccCcCCCEEEEEecCCCCeEEEE
Confidence 4578889999999999998653334443
No 10
>2d9r_A Conserved hypothetical protein; MCSG, structural genomics, hypothe protein, PSI, protein structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: b.129.2.1
Probab=48.01 E-value=70 Score=24.12 Aligned_cols=78 Identities=13% Similarity=0.116 Sum_probs=49.8
Q ss_pred eEEEEccCcccCCCceeecCHHHHHhhcCCCCeeEEEEe-CCCCeEEEEEEEeC-CeeeeccChhHhhhhcCCCCCCEEE
Q 041048 232 LFRVILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIID-SNGKQWPVRCIFKN-GGAKFSKGWPEFVWENNLDESDVCV 309 (335)
Q Consensus 232 ~F~~~m~~s~v~~~~~L~iP~~F~~~~l~~~~~~i~L~~-~~G~~W~v~~~~~~-~~~~l~~GW~~F~~~n~L~~GD~cv 309 (335)
.|...|....-..+..+.||.+..+.+. ...|.++. -+|..|...+...+ +.+.|. ==++..++-++++||.+.
T Consensus 23 ~F~a~l~~~~~~gg~fV~vP~~i~e~~G---~G~v~V~~tI~g~~~~tsL~p~g~G~~~Lp-vk~~vRka~g~~~GD~V~ 98 (104)
T 2d9r_A 23 EFDAIIRQVPDMDAAYVEIPFDVKTVYG---KGRVRVNATFDGYPYTGYIVRMGLPCHILG-LRQDIRRAIGKQPGDSVY 98 (104)
T ss_dssp EEEEECEECTTCSCEEEECCSCHHHHHC---SSCEEEEEEETTEEEEEEEEESSTTCEEEE-ECHHHHHHHTCCTTSEEE
T ss_pred EEEEEEEEecCCCCeEEEeChHHHHhcC---CCceEEEEEECCEEEEEEEEECCCCcEEEE-ecHHHHHHcCCCCCCEEE
Confidence 4777776422122257999987655554 34444442 26899999887654 443331 125788899999999998
Q ss_pred EEEe
Q 041048 310 FELI 313 (335)
Q Consensus 310 Fel~ 313 (335)
+++.
T Consensus 99 V~L~ 102 (104)
T 2d9r_A 99 VTLL 102 (104)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
No 11
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=43.14 E-value=15 Score=27.04 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=20.9
Q ss_pred HhhhhcCCCCCCEEEEEEecCCCcEEEE
Q 041048 295 EFVWENNLDESDVCVFELIKSNDVTLKA 322 (335)
Q Consensus 295 ~F~~~n~L~~GD~cvFel~~~~~~~~~V 322 (335)
.-+..+..++||+++|.+.....-++.|
T Consensus 12 ~Wa~~~~f~vGD~L~F~y~~~~hsV~~v 39 (91)
T 1f56_A 12 NGARGKSFRAGDVLVFKYIKGQHNVVAV 39 (91)
T ss_dssp BSCTTCCBCTTCEEEEECCBTTBCEEEE
T ss_pred cCcCCccEeCCCEEEEEccCCCCeEEEE
Confidence 4477889999999999998754334444
No 12
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=42.61 E-value=18 Score=27.61 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=21.5
Q ss_pred hHhhhhcCCCCCCEEEEEEecCCCcEEEE
Q 041048 294 PEFVWENNLDESDVCVFELIKSNDVTLKA 322 (335)
Q Consensus 294 ~~F~~~n~L~~GD~cvFel~~~~~~~~~V 322 (335)
..-+..+..++||.++|.+.....-++.|
T Consensus 22 ~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V 50 (109)
T 1ws8_A 22 AKWASSNKFHVGDSLLFNYNNKFHNVLQV 50 (109)
T ss_dssp HHHHHTSCBCTTCEEEEECCTTTCCEEEE
T ss_pred hHhhcCCcCcCCCEEEEeecCCCceEEEE
Confidence 35578899999999999998753224444
No 13
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=40.56 E-value=27 Score=22.70 Aligned_cols=23 Identities=9% Similarity=0.242 Sum_probs=20.2
Q ss_pred HHHHhHcCCCCCcEEEEEEcccc
Q 041048 68 HEFIEHCSIHSGYFLIFKYQGNS 90 (335)
Q Consensus 68 ~~F~~~~~L~~Gd~lvF~~~g~~ 90 (335)
+++.+..+|+.||.+.|...++.
T Consensus 18 k~ir~~lgi~~Gd~v~i~~~~~~ 40 (53)
T 2l66_A 18 AKVRQKFQIKEGDLVKVTFDESE 40 (53)
T ss_dssp HHHHHHSCCCTTCEEEEEECSSS
T ss_pred HHHHHHcCcCCCCEEEEEEECCE
Confidence 47889999999999999998774
No 14
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=40.29 E-value=49 Score=22.22 Aligned_cols=28 Identities=11% Similarity=-0.020 Sum_probs=23.4
Q ss_pred CeEEEcccHHHHHhHcCCCCCcEEEEEEccc
Q 041048 59 KQLWFDIGWHEFIEHCSIHSGYFLIFKYQGN 89 (335)
Q Consensus 59 ~~~~~~~GW~~F~~~~~L~~Gd~lvF~~~g~ 89 (335)
|++.+- ++..+..+|+.||.|.|...++
T Consensus 22 GqItIP---keiR~~Lgi~~Gd~l~i~~~~~ 49 (59)
T 1yfb_A 22 GRVVIP---IELRRTLGIAEKDALEIYVDDE 49 (59)
T ss_dssp CEEECC---HHHHHHTTCCTTCEEEEEEETT
T ss_pred CEEEeC---HHHHHHcCCCCCCEEEEEEECC
Confidence 556665 5788999999999999999876
No 15
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=40.12 E-value=6.6 Score=30.52 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=17.8
Q ss_pred HHHhHcCCCCCcEEEEEEccc
Q 041048 69 EFIEHCSIHSGYFLIFKYQGN 89 (335)
Q Consensus 69 ~F~~~~~L~~Gd~lvF~~~g~ 89 (335)
.-+.....+.||.|+|+|...
T Consensus 23 ~Wa~~~~f~vGD~L~F~y~~~ 43 (116)
T 1x9u_A 23 TWATGKTFRVGDELEFDFAAG 43 (116)
T ss_dssp HHHTTCCEETTCEEEECCCTT
T ss_pred hccccccCcCCCEEEEEecCC
Confidence 457888999999999999853
No 16
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=38.72 E-value=7.4 Score=29.09 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=18.5
Q ss_pred HhHcCCCCCcEEEEEEccc--ceEEE
Q 041048 71 IEHCSIHSGYFLIFKYQGN--SNFNV 94 (335)
Q Consensus 71 ~~~~~L~~Gd~lvF~~~g~--~~F~V 94 (335)
+.....+.||.|+|+|... +..+|
T Consensus 19 a~~~~f~vGD~L~F~y~~~~hsV~~v 44 (96)
T 2cbp_A 19 PKGKRFRAGDILLFNYNPSMHNVVVV 44 (96)
T ss_dssp TTTCCBCTTCEEEEECCTTTCCEEEE
T ss_pred ccCceEcCCCEEEEEecCCCCEEEEE
Confidence 6667899999999999853 44444
No 17
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=37.05 E-value=26 Score=26.72 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=18.7
Q ss_pred HHHHhHcCCCCCcEEEEEEccc
Q 041048 68 HEFIEHCSIHSGYFLIFKYQGN 89 (335)
Q Consensus 68 ~~F~~~~~L~~Gd~lvF~~~g~ 89 (335)
..-+..+..+.||.|+|+|...
T Consensus 22 ~~Wa~~~~F~vGD~LvF~y~~~ 43 (109)
T 1ws8_A 22 AKWASSNKFHVGDSLLFNYNNK 43 (109)
T ss_dssp HHHHHTSCBCTTCEEEEECCTT
T ss_pred hHhhcCCcCcCCCEEEEeecCC
Confidence 3557888999999999999964
No 18
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=33.31 E-value=15 Score=29.32 Aligned_cols=29 Identities=7% Similarity=0.093 Sum_probs=21.1
Q ss_pred hHhhhhcCCCCCCEEEEEEecCCCcEEEE
Q 041048 294 PEFVWENNLDESDVCVFELIKSNDVTLKA 322 (335)
Q Consensus 294 ~~F~~~n~L~~GD~cvFel~~~~~~~~~V 322 (335)
..-+..+..++||+++|++.....-++.|
T Consensus 24 ~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V 52 (138)
T 1jer_A 24 SQWAAGKTFRVGDSLQFNFPANAHNVHEM 52 (138)
T ss_dssp HHHHHTCCEETTCEEEECCCTTTCCCEEE
T ss_pred hhhhcCCcCcCCCEEEEeecCCCceEEEe
Confidence 34577889999999999998543224444
No 19
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=31.38 E-value=51 Score=22.81 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=19.2
Q ss_pred CceeecCHHHHHhhcCCCCeeEEEE
Q 041048 245 TLLLHVPTSFARKYLNGIKGYITII 269 (335)
Q Consensus 245 ~~~L~iP~~F~~~~l~~~~~~i~L~ 269 (335)
.+++.||++++++.+......+.|.
T Consensus 24 tyYInIPaeI~kaLgIk~gD~fel~ 48 (68)
T 3o27_A 24 TFYLLIPKDIAEALDIKPDDTFILN 48 (68)
T ss_dssp CEEEEECHHHHHHTTCCTTCCEEEE
T ss_pred EEEEeCcHHHHHHhCCCCCCEEEEE
Confidence 3789999999999977756555443
No 20
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=24.61 E-value=22 Score=28.40 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=18.2
Q ss_pred HHHHhHcCCCCCcEEEEEEccc
Q 041048 68 HEFIEHCSIHSGYFLIFKYQGN 89 (335)
Q Consensus 68 ~~F~~~~~L~~Gd~lvF~~~g~ 89 (335)
..-+..+..+.||.|+|+|...
T Consensus 24 ~~Wa~~~~F~vGD~LvF~y~~~ 45 (138)
T 1jer_A 24 SQWAAGKTFRVGDSLQFNFPAN 45 (138)
T ss_dssp HHHHHTCCEETTCEEEECCCTT
T ss_pred hhhhcCCcCcCCCEEEEeecCC
Confidence 4557788999999999999843
No 21
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=23.69 E-value=1.3e+02 Score=21.37 Aligned_cols=28 Identities=11% Similarity=0.070 Sum_probs=19.1
Q ss_pred hcCCCCCCEEEEEEecCCCcEEEEEEEe
Q 041048 299 ENNLDESDVCVFELIKSNDVTLKATIFR 326 (335)
Q Consensus 299 ~n~L~~GD~cvFel~~~~~~~~~V~Ifr 326 (335)
-..|+.||.+-|++.+..+..+.|.=++
T Consensus 45 l~~lk~Gd~V~F~~~~~~~g~~~it~i~ 72 (82)
T 2l55_A 45 PQGLKAGDRVAFSFRLDPHGMATLVTVA 72 (82)
T ss_dssp CSSCSTTCEEEEEEEEETTTEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEECCCCeEEEEEEE
Confidence 4689999999999987654233333333
Done!