BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041049
         (217 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1H20|A Chain A, Solution Structure Of The Potato Carboxypeptidase
          Inhibitor
          Length = 39

 Score = 26.9 bits (58), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 27 CNGPCRTPDDCEGELIC 43
          CN PC+T DDC G   C
Sbjct: 8  CNKPCKTHDDCSGAWFC 24


>pdb|4CPA|I Chain I, Refined Crystal Structure Of The Potato Inhibitor
          Complex Of Carboxypeptidase A At 2.5 Angstroms
          Resolution
 pdb|4CPA|J Chain J, Refined Crystal Structure Of The Potato Inhibitor
          Complex Of Carboxypeptidase A At 2.5 Angstroms
          Resolution
          Length = 38

 Score = 26.9 bits (58), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 27 CNGPCRTPDDCEGELIC 43
          CN PC+T DDC G   C
Sbjct: 8  CNKPCKTHDDCSGAWFC 24


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.135    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,636,726
Number of Sequences: 62578
Number of extensions: 261641
Number of successful extensions: 481
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 479
Number of HSP's gapped (non-prelim): 5
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)