Query 041049
Match_columns 217
No_of_seqs 192 out of 605
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 03:17:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03024 Putative EG45-like do 99.7 1E-17 2.3E-22 135.4 10.7 82 119-215 33-124 (125)
2 PF03330 DPBB_1: Rare lipoprot 99.7 1.4E-16 3.1E-21 116.7 6.2 66 135-214 2-78 (78)
3 smart00837 DPBB_1 Rare lipopro 99.4 1.2E-12 2.7E-17 99.7 6.3 78 134-214 1-87 (87)
4 PLN00050 expansin A; Provision 99.3 2.3E-11 4.9E-16 108.4 9.3 92 120-216 43-147 (247)
5 PLN00193 expansin-A; Provision 99.3 3.2E-11 7E-16 108.0 10.1 94 120-216 48-155 (256)
6 PLN03023 Expansin-like B1; Pro 98.8 2.2E-08 4.7E-13 89.5 9.9 96 102-215 28-137 (247)
7 PF00967 Barwin: Barwin family 98.8 4.1E-09 8.8E-14 85.0 4.6 57 144-216 56-116 (119)
8 PRK10672 rare lipoprotein A; P 98.6 2.8E-07 6E-12 86.4 11.2 104 85-214 64-168 (361)
9 TIGR00413 rlpA rare lipoprotei 98.6 4.9E-07 1.1E-11 79.2 10.1 85 104-214 3-88 (208)
10 COG0797 RlpA Lipoproteins [Cel 98.5 1.7E-06 3.6E-11 77.0 11.1 103 85-213 68-171 (233)
11 COG4305 Endoglucanase C-termin 98.0 2.1E-05 4.6E-10 68.4 7.0 71 131-216 55-129 (232)
12 PF07249 Cerato-platanin: Cera 97.4 0.00071 1.5E-08 54.9 7.1 64 133-216 44-111 (119)
13 PF07127 Nodulin_late: Late no 94.9 0.047 1E-06 38.0 4.2 41 8-48 6-53 (54)
14 PF02977 CarbpepA_inh: Carboxy 88.9 0.16 3.5E-06 35.3 0.6 23 21-43 2-24 (46)
15 PF07473 Toxin_11: Spasmodic p 70.7 3.3 7.2E-05 26.0 1.7 23 26-48 1-23 (28)
16 TIGR02645 ARCH_P_rylase putati 61.7 24 0.00052 35.1 6.6 45 145-203 26-70 (493)
17 PF01683 EB: EB module; Inter 61.5 6.3 0.00014 26.4 1.9 22 28-49 19-40 (52)
18 PF02532 PsbI: Photosystem II 50.2 19 0.00041 24.0 2.6 22 3-24 5-28 (36)
19 TIGR03327 AMP_phos AMP phospho 45.3 65 0.0014 32.2 6.6 43 147-203 29-71 (500)
20 cd00150 PlantTI Plant trypsin 45.0 16 0.00034 22.9 1.5 21 29-49 6-27 (27)
21 CHL00024 psbI photosystem II p 41.6 15 0.00033 24.4 1.1 22 3-24 5-28 (36)
22 smart00286 PTI Plant trypsin i 41.2 20 0.00044 22.7 1.6 21 29-49 8-29 (29)
23 PRK02655 psbI photosystem II r 40.1 16 0.00035 24.5 1.1 22 3-24 5-28 (38)
24 TIGR03170 flgA_cterm flagella 39.6 43 0.00092 25.9 3.6 25 145-169 92-117 (122)
25 PRK04350 thymidine phosphoryla 38.0 1.1E+02 0.0023 30.6 6.8 44 148-204 23-66 (490)
26 PF01666 DX: DX module; Inter 32.2 32 0.0007 25.8 1.8 24 29-52 48-76 (76)
27 PRK08515 flgA flagellar basal 30.2 65 0.0014 28.3 3.6 25 145-169 192-216 (222)
28 PF00299 Squash: Squash family 29.9 25 0.00054 22.3 0.7 20 29-48 8-28 (29)
29 PRK12618 flgA flagellar basal 29.8 72 0.0016 26.3 3.6 23 147-169 110-133 (141)
30 smart00051 DSL delta serrate l 28.5 30 0.00065 24.9 1.0 28 24-59 27-54 (63)
31 PF13144 SAF_2: SAF-like 27.5 82 0.0018 26.2 3.6 25 145-169 166-191 (196)
32 KOG4106 Uncharacterized conser 24.7 74 0.0016 26.3 2.7 24 144-168 24-47 (125)
33 PF02237 BPL_C: Biotin protein 24.7 1.4E+02 0.003 19.9 3.7 21 148-169 2-22 (48)
34 PRK06005 flgA flagellar basal 24.2 1E+02 0.0022 25.9 3.6 24 146-169 128-152 (160)
35 PF12273 RCR: Chitin synthesis 23.7 54 0.0012 26.1 1.8 7 51-57 32-38 (130)
36 PRK07018 flgA flagellar basal 23.4 1E+02 0.0022 27.1 3.6 25 145-169 203-228 (235)
37 PRK06231 F0F1 ATP synthase sub 23.4 68 0.0015 27.8 2.5 30 1-31 3-32 (205)
38 COG4332 Uncharacterized protei 22.8 1.6E+02 0.0035 26.2 4.7 52 147-202 30-81 (203)
39 PRK06804 flgA flagellar basal 21.2 1.2E+02 0.0025 27.7 3.6 25 145-169 229-254 (261)
No 1
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.75 E-value=1e-17 Score=135.43 Aligned_cols=82 Identities=28% Similarity=0.566 Sum_probs=72.2
Q ss_pred CCCCCCCcccCCCCceEEeeccccCCCCCCCceEEEEe--C--------CCCEEEEEEeecCCCCCCCCCCCCCCCCCCC
Q 041049 119 DPSECDGKYHDNSVPVVALSTGWYNGGSRCGHMIKITA--Q--------NGRSVMAKVVDECDSMHGCDSEHADEPPCDN 188 (217)
Q Consensus 119 gpgACG~~~~~dsd~VVALstg~~~~gs~CGk~I~It~--~--------NGkSV~A~VVD~C~S~~GCd~~h~~~PpC~~ 188 (217)
.++||++ .+.+++++|||++.+|++++.||++++|+. + |||+|+|+|+|+|++ +|.
T Consensus 33 ~~gAC~~-~~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~gksV~V~VtD~CP~------------~C~- 98 (125)
T PLN03024 33 TPSACYR-GTSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCTGKSVTVKIVDHCPS------------GCA- 98 (125)
T ss_pred CCccccC-CCCCCCEeEEeCHHHcCCCcccCceEEEEECCCCccccccccCCeEEEEEEcCCCC------------CCC-
Confidence 4579984 577889999999999999999999999984 1 689999999999952 475
Q ss_pred CceecCHHHHHHhcCCCCCcEEEEEEE
Q 041049 189 DIVDGSDAVWSALGLDKDIGVVGVTWS 215 (217)
Q Consensus 189 n~lDLS~avF~aLg~~~d~G~v~ItWs 215 (217)
++||||+++|++|+ +.+.|+|+|+|.
T Consensus 99 ~~~DLS~~AF~~iA-~~~aG~v~V~y~ 124 (125)
T PLN03024 99 STLDLSREAFAQIA-NPVAGIINIDYI 124 (125)
T ss_pred CceEcCHHHHHHhc-CccCCEEEEEEe
Confidence 59999999999999 889999999995
No 2
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.66 E-value=1.4e-16 Score=116.70 Aligned_cols=66 Identities=41% Similarity=0.781 Sum_probs=57.6
Q ss_pred EEeeccccCCCCCCCceEEEEe----CC-----C--CEEEEEEeecCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhcC
Q 041049 135 VALSTGWYNGGSRCGHMIKITA----QN-----G--RSVMAKVVDECDSMHGCDSEHADEPPCDNDIVDGSDAVWSALGL 203 (217)
Q Consensus 135 VALstg~~~~gs~CGk~I~It~----~N-----G--kSV~A~VVD~C~S~~GCd~~h~~~PpC~~n~lDLS~avF~aLg~ 203 (217)
||++..||+++..||++++++. .. . |+|+|+|+|+| |+|.+++||||+++|++|+
T Consensus 2 ~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~C-------------p~~~~~~lDLS~~aF~~la- 67 (78)
T PF03330_consen 2 AAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRC-------------PGCPPNHLDLSPAAFKALA- 67 (78)
T ss_dssp EEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE--------------TTSSSSEEEEEHHHHHHTB-
T ss_pred eEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccC-------------CCCcCCEEEeCHHHHHHhC-
Confidence 7999999999999999999986 11 2 99999999999 5699999999999999999
Q ss_pred CCCCcEEEEEE
Q 041049 204 DKDIGVVGVTW 214 (217)
Q Consensus 204 ~~d~G~v~ItW 214 (217)
+++.|+++|+|
T Consensus 68 ~~~~G~i~V~w 78 (78)
T PF03330_consen 68 DPDAGVIPVEW 78 (78)
T ss_dssp STTCSSEEEEE
T ss_pred CCCceEEEEEC
Confidence 88999999999
No 3
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.36 E-value=1.2e-12 Score=99.74 Aligned_cols=78 Identities=23% Similarity=0.438 Sum_probs=61.4
Q ss_pred eEEeeccccCCCCCCCceEEEEe-------CCCCEEEEEEeecCCCCCCCCCCCCCCCCCC--CCceecCHHHHHHhcCC
Q 041049 134 VVALSTGWYNGGSRCGHMIKITA-------QNGRSVMAKVVDECDSMHGCDSEHADEPPCD--NDIVDGSDAVWSALGLD 204 (217)
Q Consensus 134 VVALstg~~~~gs~CGk~I~It~-------~NGkSV~A~VVD~C~S~~GCd~~h~~~PpC~--~n~lDLS~avF~aLg~~ 204 (217)
.+|+|+.+|+++..||+.++|+. .+|++|+++|+|+|+...+..++. ..-|. ..++|||+.+|.+|+ .
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~--~~~C~~~~~hfDLS~~AF~~iA-~ 77 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDN--GGWCNPPRKHFDLSQPAFEKIA-Q 77 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccC--CCccCCCCcCeEcCHHHHHHHh-h
Confidence 47999999999999999999983 145799999999998532111000 02263 489999999999999 8
Q ss_pred CCCcEEEEEE
Q 041049 205 KDIGVVGVTW 214 (217)
Q Consensus 205 ~d~G~v~ItW 214 (217)
...|+|+|+|
T Consensus 78 ~~~Gvi~v~y 87 (87)
T smart00837 78 YKAGIVPVKY 87 (87)
T ss_pred hcCCEEeeEC
Confidence 8999999987
No 4
>PLN00050 expansin A; Provisional
Probab=99.26 E-value=2.3e-11 Score=108.41 Aligned_cols=92 Identities=24% Similarity=0.432 Sum_probs=70.6
Q ss_pred CCCCCCcccC-----CCCceEEeeccccCCCCCCCceEEEEeCCC------CEEEEEEeecCCCCCCCCCCCCCCCCCC-
Q 041049 120 PSECDGKYHD-----NSVPVVALSTGWYNGGSRCGHMIKITAQNG------RSVMAKVVDECDSMHGCDSEHADEPPCD- 187 (217)
Q Consensus 120 pgACG~~~~~-----dsd~VVALstg~~~~gs~CGk~I~It~~NG------kSV~A~VVD~C~S~~GCd~~h~~~PpC~- 187 (217)
-|||| |.+ ...+++||++.+|+++..||.+++|+.+++ ++|+++|+|+|+...+..++ ...-|.
T Consensus 43 gGACG--Yg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~gsV~V~itd~CP~~~~~~~~--~~gwC~~ 118 (247)
T PLN00050 43 GGACG--YGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPGSIIITATNFCPPNLALPNN--DGGWCNP 118 (247)
T ss_pred CcccC--CCCccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCCcEEEEEecCCCCCcCcCcc--CCCcCCC
Confidence 47999 322 256899999999999999999999997432 38999999999742221000 011274
Q ss_pred -CCceecCHHHHHHhcCCCCCcEEEEEEEe
Q 041049 188 -NDIVDGSDAVWSALGLDKDIGVVGVTWSM 216 (217)
Q Consensus 188 -~n~lDLS~avF~aLg~~~d~G~v~ItWs~ 216 (217)
..|+|||+.||.+|+ ....|+|+|+|+-
T Consensus 119 ~~~hFDLS~~AF~~iA-~~~aGii~V~yRR 147 (247)
T PLN00050 119 PQQHFDLSQPVFQKIA-QYKAGIVPVQYRR 147 (247)
T ss_pred CCcccccCHHHHHHHh-hhcCCeeeeEEEE
Confidence 489999999999999 7889999999973
No 5
>PLN00193 expansin-A; Provisional
Probab=99.25 E-value=3.2e-11 Score=107.98 Aligned_cols=94 Identities=22% Similarity=0.377 Sum_probs=70.1
Q ss_pred CCCCCCcc---cCCCCceEEeeccccCCCCCCCceEEEEeC---------CCCEEEEEEeecCCCCCCCCCCCCCCCCCC
Q 041049 120 PSECDGKY---HDNSVPVVALSTGWYNGGSRCGHMIKITAQ---------NGRSVMAKVVDECDSMHGCDSEHADEPPCD 187 (217)
Q Consensus 120 pgACG~~~---~~dsd~VVALstg~~~~gs~CGk~I~It~~---------NGkSV~A~VVD~C~S~~GCd~~h~~~PpC~ 187 (217)
-||||-.. ....-+++||++..|+++..||.+++|+.. +|++|+++|+|+|+...+ ...+...-|.
T Consensus 48 gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~Vt~td~CP~n~~--~~~~~ggwC~ 125 (256)
T PLN00193 48 GGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTITATNFCPPNYA--LPNNNGGWCN 125 (256)
T ss_pred CcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEEEEEecCCCCccc--ccccCCCcCC
Confidence 47999211 112458999999999999999999999852 578999999999974211 0000011264
Q ss_pred --CCceecCHHHHHHhcCCCCCcEEEEEEEe
Q 041049 188 --NDIVDGSDAVWSALGLDKDIGVVGVTWSM 216 (217)
Q Consensus 188 --~n~lDLS~avF~aLg~~~d~G~v~ItWs~ 216 (217)
..|+|||+.+|.+|+ ....|+|+|+|+-
T Consensus 126 ~~~~HFDLS~~AF~~iA-~~~~Giv~V~yrR 155 (256)
T PLN00193 126 PPLQHFDMAQPAWEKIG-IYRGGIVPVLFQR 155 (256)
T ss_pred CCCcccccCHHHHHHHh-hhcCCeEeEEEEE
Confidence 379999999999999 6789999999963
No 6
>PLN03023 Expansin-like B1; Provisional
Probab=98.83 E-value=2.2e-08 Score=89.53 Aligned_cols=96 Identities=21% Similarity=0.232 Sum_probs=69.9
Q ss_pred CceeEEccccCCCCCCCCCCCCCCcc---cCCCCceEEeeccccCCCCCCCceEEEEeC-----CCCEEEEEEeecCCCC
Q 041049 102 TDAKLTNNDFSEGGEGGDPSECDGKY---HDNSVPVVALSTGWYNGGSRCGHMIKITAQ-----NGRSVMAKVVDECDSM 173 (217)
Q Consensus 102 t~A~lt~n~f~~ggdgGgpgACG~~~---~~dsd~VVALstg~~~~gs~CGk~I~It~~-----NGkSV~A~VVD~C~S~ 173 (217)
.+|++|-...-.|. .-||||-.- .....+++|++ .+|+++..||.+.+|+.. .+++|+++|+|.|+
T Consensus 28 a~AT~Yg~~~g~gt---~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~~~~C~~~~v~V~iTd~~~-- 101 (247)
T PLN03023 28 SRATYYGSPDCLGT---PTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKAPNLCSDDGVNVVVTDYGE-- 101 (247)
T ss_pred ceEEEeCCCCCCCC---CCccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCCCCccCCCCeEEEEEeCCC--
Confidence 44777665433332 246898211 11235689998 899999999999999862 35689999999994
Q ss_pred CCCCCCCCCCCCCCCCceecCHHHHHHhcCC------CCCcEEEEEEE
Q 041049 174 HGCDSEHADEPPCDNDIVDGSDAVWSALGLD------KDIGVVGVTWS 215 (217)
Q Consensus 174 ~GCd~~h~~~PpC~~n~lDLS~avF~aLg~~------~d~G~v~ItWs 215 (217)
+ ...|+|||..+|.+|+.+ ...|+|+|+++
T Consensus 102 -----------~-~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~Yr 137 (247)
T PLN03023 102 -----------G-DKTDFILSPRAYARLARPNMAAELFAYGVVDVEYR 137 (247)
T ss_pred -----------C-CCCccccCHHHHHHHhCccccchhccCcEEEeEEE
Confidence 2 357999999999999932 24699999885
No 7
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=98.82 E-value=4.1e-09 Score=85.02 Aligned_cols=57 Identities=26% Similarity=0.558 Sum_probs=42.4
Q ss_pred CCCCCCceEEEEe-CCCCEEEEEEeecCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhcCCC---CCcEEEEEEEe
Q 041049 144 GGSRCGHMIKITA-QNGRSVMAKVVDECDSMHGCDSEHADEPPCDNDIVDGSDAVWSALGLDK---DIGVVGVTWSM 216 (217)
Q Consensus 144 ~gs~CGk~I~It~-~NGkSV~A~VVD~C~S~~GCd~~h~~~PpC~~n~lDLS~avF~aLg~~~---d~G~v~ItWs~ 216 (217)
+...|||++|||+ .+|.+++|+|||+|. ++.|||.+.||++|..+- ..|.+.|+|+|
T Consensus 56 gq~~CGkClrVTNt~tga~~~~RIVDqCs----------------nGGLDld~~vF~~iDtdG~G~~~Ghl~V~y~f 116 (119)
T PF00967_consen 56 GQDSCGKCLRVTNTATGAQVTVRIVDQCS----------------NGGLDLDPTVFNQIDTDGQGYAQGHLIVDYEF 116 (119)
T ss_dssp SGGGTT-EEEEE-TTT--EEEEEEEEE-S----------------SSSEES-SSSHHHH-SSSHHHHHTEEEEEEEE
T ss_pred CcccccceEEEEecCCCcEEEEEEEEcCC----------------CCCcccChhHHhhhccCCcccccceEEEEEEE
Confidence 4578999999998 579999999999994 458999999999997332 38999999987
No 8
>PRK10672 rare lipoprotein A; Provisional
Probab=98.63 E-value=2.8e-07 Score=86.35 Aligned_cols=104 Identities=15% Similarity=0.179 Sum_probs=83.1
Q ss_pred CCceeceeecCCCccccCceeEEccccCCCCCCCCCCCCCCcccCCCCceEEeeccccCCCCCCCceEEEEe-CCCCEEE
Q 041049 85 HGKPYPLYSCSPPVTSSTDAKLTNNDFSEGGEGGDPSECDGKYHDNSVPVVALSTGWYNGGSRCGHMIKITA-QNGRSVM 163 (217)
Q Consensus 85 ~g~~y~~y~cSp~v~~~t~A~lt~n~f~~ggdgGgpgACG~~~~~dsd~VVALstg~~~~gs~CGk~I~It~-~NGkSV~ 163 (217)
.||.|...+=.-..+....|.+|-..|. |..+|-|+.|+ ...|.+|..+-- -+.+|+||+ .|||+|+
T Consensus 64 ~G~~Y~~~~~~~~~~~~G~ASwYg~~f~-----G~~TA~Ge~~~-~~~~tAAH~tLP------lps~vrVtNl~ngrsvv 131 (361)
T PRK10672 64 NGKSYKIVQDPSNFSQAGLAAIYDAEAG-----SNLTASGERFD-PNALTAAHPTLP------IPSYVRVTNLANGRMIV 131 (361)
T ss_pred CCEEEEeCccCCCcceEEEEEEeCCccC-----CCcCcCceeec-CCcCeeeccCCC------CCCEEEEEECCCCcEEE
Confidence 6999998764445666788888887774 77899997665 457888888775 678999998 6999999
Q ss_pred EEEeecCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhcCCCCCcEEEEEE
Q 041049 164 AKVVDECDSMHGCDSEHADEPPCDNDIVDGSDAVWSALGLDKDIGVVGVTW 214 (217)
Q Consensus 164 A~VVD~C~S~~GCd~~h~~~PpC~~n~lDLS~avF~aLg~~~d~G~v~ItW 214 (217)
++|.|+.+... ..+||||++++++||+ ...++|.|+-
T Consensus 132 VrVnDRGP~~~-------------gRiiDLS~aAA~~Lg~-~~~~~V~ve~ 168 (361)
T PRK10672 132 VRINDRGPYGP-------------GRVIDLSRAAADRLNT-SNNTKVRIDP 168 (361)
T ss_pred EEEeCCCCCCC-------------CCeeEcCHHHHHHhCC-CCCceEEEEE
Confidence 99999998643 3799999999999995 5567777763
No 9
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=98.56 E-value=4.9e-07 Score=79.24 Aligned_cols=85 Identities=25% Similarity=0.223 Sum_probs=68.4
Q ss_pred eeEEccccCCCCCCCCCCCCCCcccCCCCceEEeeccccCCCCCCCceEEEEe-CCCCEEEEEEeecCCCCCCCCCCCCC
Q 041049 104 AKLTNNDFSEGGEGGDPSECDGKYHDNSVPVVALSTGWYNGGSRCGHMIKITA-QNGRSVMAKVVDECDSMHGCDSEHAD 182 (217)
Q Consensus 104 A~lt~n~f~~ggdgGgpgACG~~~~~dsd~VVALstg~~~~gs~CGk~I~It~-~NGkSV~A~VVD~C~S~~GCd~~h~~ 182 (217)
|.+|-..|. |..+|.|+.|+ ...|.+|..+-. .|..|+|++ .|||+|+|+|.|+++...|
T Consensus 3 ASwYg~~f~-----G~~TAnGe~y~-~~~~tAAHktLP------lgT~V~VtNl~ngrsviVrVnDRGPf~~g------- 63 (208)
T TIGR00413 3 ASWYGPKFH-----GRKTANGEVYN-MKALTAAHKTLP------FNTYVKVTNLHNNRSVIVRINDRGPFSDD------- 63 (208)
T ss_pred EeEeCCCCC-----CCcCCCCeecC-CCccccccccCC------CCCEEEEEECCCCCEEEEEEeCCCCCCCC-------
Confidence 566666665 77899997665 456888888775 788999998 5999999999999986444
Q ss_pred CCCCCCCceecCHHHHHHhcCCCCCcEEEEEE
Q 041049 183 EPPCDNDIVDGSDAVWSALGLDKDIGVVGVTW 214 (217)
Q Consensus 183 ~PpC~~n~lDLS~avF~aLg~~~d~G~v~ItW 214 (217)
.+||||++++++|| -.+.|+.+|.-
T Consensus 64 ------RiIDLS~aAA~~Lg-~~~~G~a~V~v 88 (208)
T TIGR00413 64 ------RIIDLSHAAAREIG-LISRGVGQVRI 88 (208)
T ss_pred ------CEEECCHHHHHHcC-CCcCceEEEEE
Confidence 69999999999999 57778777653
No 10
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=98.47 E-value=1.7e-06 Score=77.04 Aligned_cols=103 Identities=25% Similarity=0.286 Sum_probs=77.3
Q ss_pred CCceeceeecCCCccccCceeEEccccCCCCCCCCCCCCCCcccCCCCceEEeeccccCCCCCCCceEEEEe-CCCCEEE
Q 041049 85 HGKPYPLYSCSPPVTSSTDAKLTNNDFSEGGEGGDPSECDGKYHDNSVPVVALSTGWYNGGSRCGHMIKITA-QNGRSVM 163 (217)
Q Consensus 85 ~g~~y~~y~cSp~v~~~t~A~lt~n~f~~ggdgGgpgACG~~~~~dsd~VVALstg~~~~gs~CGk~I~It~-~NGkSV~ 163 (217)
.|+.|....=........-|..|-..|- |..+|=|+.|+ ...+.+|..+--| +.+++||+ .|||+|+
T Consensus 68 ~g~~y~~~~~~~~~~~~G~ASwYg~~fh-----gr~TA~Ge~~n-~~~~tAAH~TLP~------~t~v~VtNl~Ngrsvv 135 (233)
T COG0797 68 KGKSYYPKAEPASFEQVGYASWYGEKFH-----GRKTANGERYD-MNALTAAHKTLPL------PTYVRVTNLDNGRSVV 135 (233)
T ss_pred eeeEEEeeeccccccccceeeeeccccC-----CccccCccccc-ccccccccccCCC------CCEEEEEEccCCcEEE
Confidence 5778877652222334566777766664 67888886554 4578899888764 57899998 7999999
Q ss_pred EEEeecCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhcCCCCCcEEEEE
Q 041049 164 AKVVDECDSMHGCDSEHADEPPCDNDIVDGSDAVWSALGLDKDIGVVGVT 213 (217)
Q Consensus 164 A~VVD~C~S~~GCd~~h~~~PpC~~n~lDLS~avF~aLg~~~d~G~v~It 213 (217)
|+|.|+.+...| .+||||.+++++|+ -...|+.+|.
T Consensus 136 VRINDRGPf~~g-------------RiIDlS~aAA~~l~-~~~~G~a~V~ 171 (233)
T COG0797 136 VRINDRGPFVSG-------------RIIDLSKAAADKLG-MIRSGVAKVR 171 (233)
T ss_pred EEEeCCCCCCCC-------------cEeEcCHHHHHHhC-CccCceEEEE
Confidence 999999986444 79999999999999 5677777544
No 11
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=97.97 E-value=2.1e-05 Score=68.42 Aligned_cols=71 Identities=18% Similarity=0.360 Sum_probs=59.9
Q ss_pred CCceEEeeccccCC----CCCCCceEEEEeCCCCEEEEEEeecCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhcCCCC
Q 041049 131 SVPVVALSTGWYNG----GSRCGHMIKITAQNGRSVMAKVVDECDSMHGCDSEHADEPPCDNDIVDGSDAVWSALGLDKD 206 (217)
Q Consensus 131 sd~VVALstg~~~~----gs~CGk~I~It~~NGkSV~A~VVD~C~S~~GCd~~h~~~PpC~~n~lDLS~avF~aLg~~~d 206 (217)
+.-|-||+....|- ..+=|..+||+.|.|++ ++.|.|.-+ .=..+.||||+.+|.++| +..
T Consensus 55 d~eITAlNPaqlNlGGipAAmAGaYLrVqGPKG~T-TVYVTDlYP-------------egasGaLDLSpNAFakIG-nm~ 119 (232)
T COG4305 55 DMEITALNPAQLNLGGIPAAMAGAYLRVQGPKGKT-TVYVTDLYP-------------EGASGALDLSPNAFAKIG-NMK 119 (232)
T ss_pred cceeeecCHHHcccCCchhhhccceEEEECCCCce-EEEEecccc-------------cccccccccChHHHhhhc-chh
Confidence 34488999888883 35789999999999964 688999884 346789999999999999 999
Q ss_pred CcEEEEEEEe
Q 041049 207 IGVVGVTWSM 216 (217)
Q Consensus 207 ~G~v~ItWs~ 216 (217)
+|+|+|.|+.
T Consensus 120 qGrIpvqWrv 129 (232)
T COG4305 120 QGRIPVQWRV 129 (232)
T ss_pred cCccceeEEE
Confidence 9999999975
No 12
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=97.37 E-value=0.00071 Score=54.93 Aligned_cols=64 Identities=25% Similarity=0.405 Sum_probs=46.4
Q ss_pred ceEEee--ccccCCCCCCCceEEEEeCCCCEEEEEEeecCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhcC--CCCCc
Q 041049 133 PVVALS--TGWYNGGSRCGHMIKITAQNGRSVMAKVVDECDSMHGCDSEHADEPPCDNDIVDGSDAVWSALGL--DKDIG 208 (217)
Q Consensus 133 ~VVALs--tg~~~~gs~CGk~I~It~~NGkSV~A~VVD~C~S~~GCd~~h~~~PpC~~n~lDLS~avF~aLg~--~~d~G 208 (217)
+|.+.. ++| +.+.||++.++++ |||++.+..+|.=. ..+++|+++|++|-. ....|
T Consensus 44 ~IGg~~~V~gW--nS~~CGtC~~lty-~g~si~vlaID~a~-----------------~gfnis~~A~n~LT~g~a~~lG 103 (119)
T PF07249_consen 44 YIGGAPAVAGW--NSPNCGTCWKLTY-NGRSIYVLAIDHAG-----------------GGFNISLDAMNDLTNGQAVELG 103 (119)
T ss_dssp SEEEETT--ST--T-TTTT-EEEEEE-TTEEEEEEEEEE-S-----------------SSEEE-HHHHHHHHTS-CCCC-
T ss_pred eeccccccccC--CCCCCCCeEEEEE-CCeEEEEEEEecCC-----------------CcccchHHHHHHhcCCccccee
Confidence 465655 356 4578999999999 99999999999852 359999999999953 35699
Q ss_pred EEEEEEEe
Q 041049 209 VVGVTWSM 216 (217)
Q Consensus 209 ~v~ItWs~ 216 (217)
+|+++|+.
T Consensus 104 ~V~a~~~q 111 (119)
T PF07249_consen 104 RVDATYTQ 111 (119)
T ss_dssp EEE-EEEE
T ss_pred EEEEEEEE
Confidence 99999863
No 13
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=94.93 E-value=0.047 Score=38.02 Aligned_cols=41 Identities=32% Similarity=0.591 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhhhhhccC-CCCCCCCCCCCCc------eEEecccc
Q 041049 8 FTIIFAMMFLPLLSNAISQC-NGPCRTPDDCEGE------LICINGIC 48 (217)
Q Consensus 8 ~~~~~~~~~~~~~~~~~s~c-~~~c~~~~dc~g~------l~c~~g~c 48 (217)
+.|+.+++||+++..+...= ..+|++..||+.. ..|+++.|
T Consensus 6 KFvY~mIiflslflv~~~~~~~~~C~~d~DCp~~c~~~~~~kCi~~~C 53 (54)
T PF07127_consen 6 KFVYAMIIFLSLFLVVTNVDAIIPCKTDSDCPKDCPPPFIPKCINNIC 53 (54)
T ss_pred hhHHHHHHHHHHHHhhcccCCCcccCccccCCCCCCCCcCcEeCcCCc
Confidence 34455555555333344333 5899999999976 34455555
No 14
>PF02977 CarbpepA_inh: Carboxypeptidase A inhibitor; InterPro: IPR004231 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family is represented by the well-characterised metallocarboxypeptidase A inhibitor (MCPI) from potatoes, which belongs to the MEROPS inhibitor family I37, clan IE. It inhibits metallopeptidases belonging to MEROPS peptidase family M14, carboxypeptidase A. In Russet Burbank potatoes, it is a mixture of approximately equal amounts of two polypeptide chains containing 38 or 39 amino acid residues. The chains differ in their amino terminal sequence only [] and are resistant to fragmentation by proteases []. The structure of the complex between bovine carboxypeptidase A and the 39-amino-acid carboxypeptidase A inhibitor from potatoes has been determined at 2.5-A resolution []. The potato inhibitor is synthesised as a precursor, having a 29 residue N-terminal signal peptide, a 27 residue pro-peptide, the 39 residue mature inhibitor region and a 7 residue C-terminal extension. The 7 residue C-terminal extension is involved in inhibitor inactivation and may be required for targeting to the vacuole where the mature active inhibitor accumulates []. The N-terminal region and the mature inhibitor are weakly related to other solananaceous proteins found in this entry, from potato, tomato and henbane, which have been incorrectly described as metallocarboxipeptidase inhibitors [].; GO: 0008191 metalloendopeptidase inhibitor activity; PDB: 4CPA_I 1H20_A 2HLG_A.
Probab=88.91 E-value=0.16 Score=35.30 Aligned_cols=23 Identities=43% Similarity=0.966 Sum_probs=16.6
Q ss_pred hhhhccCCCCCCCCCCCCCceEE
Q 041049 21 SNAISQCNGPCRTPDDCEGELIC 43 (217)
Q Consensus 21 ~~~~s~c~~~c~~~~dc~g~l~c 43 (217)
+|.+.=||++|++++||.|.-.|
T Consensus 2 ~~~~~tCn~~C~t~sDC~g~tlC 24 (46)
T PF02977_consen 2 SNILGTCNKYCNTNSDCSGITLC 24 (46)
T ss_dssp --S-TTTT-B-SSSCCCTTSSSS
T ss_pred cccccccCCccccCccccceeeh
Confidence 35667899999999999999888
No 15
>PF07473 Toxin_11: Spasmodic peptide gm9a; InterPro: IPR010012 This family consists of several spasmodic peptide gm9a sequences. Conotoxin gm9a is a putative 27-residue polypeptide encoded by Conus gloriamaris and is known to be a homologue of the 'spasmodic peptide', tx9a, isolated from the venom of the mollusk-hunting cone shell Conus textile []. Upon injection of this venom component, normal mice are converted into behavioural phenocopies of a well-known mutant, the spasmodic mouse [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1IXT_A.
Probab=70.66 E-value=3.3 Score=26.03 Aligned_cols=23 Identities=26% Similarity=0.853 Sum_probs=14.5
Q ss_pred cCCCCCCCCCCCCCceEEecccc
Q 041049 26 QCNGPCRTPDDCEGELICINGIC 48 (217)
Q Consensus 26 ~c~~~c~~~~dc~g~l~c~~g~c 48 (217)
+||..|+++-+|...-+|.-.+|
T Consensus 1 sCnnsCqshs~CashC~C~~~~c 23 (28)
T PF07473_consen 1 SCNNSCQSHSKCASHCFCHPEEC 23 (28)
T ss_dssp ---B--SSSS-SSSSEEEETTEE
T ss_pred CcchhhhhhccCccceEEccccc
Confidence 59999999999999999965544
No 16
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=61.69 E-value=24 Score=35.08 Aligned_cols=45 Identities=13% Similarity=0.153 Sum_probs=34.4
Q ss_pred CCCCCceEEEEeCCCCEEEEEEeecCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhcC
Q 041049 145 GSRCGHMIKITAQNGRSVMAKVVDECDSMHGCDSEHADEPPCDNDIVDGSDAVWSALGL 203 (217)
Q Consensus 145 gs~CGk~I~It~~NGkSV~A~VVD~C~S~~GCd~~h~~~PpC~~n~lDLS~avF~aLg~ 203 (217)
+-.=+.+|+|+. ++|+++|.|++.= +. =.++.+-||..+|++|+.
T Consensus 26 g~~~~~rv~v~~-~~~~~~a~~~~~~-~~------------~~~~~~gl~~~~~~~l~~ 70 (493)
T TIGR02645 26 GFTPQDRVEVRI-GGKSLIAILVGSD-TL------------VEMGEIGLSVSAVETFMA 70 (493)
T ss_pred CCCcCCeEEEEe-CCEEEEEEEeccc-cc------------ccCCeeeccHHHHHHcCC
Confidence 334577999998 9999999888631 11 134689999999999984
No 17
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=61.49 E-value=6.3 Score=26.42 Aligned_cols=22 Identities=32% Similarity=1.010 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCCceEEeccccC
Q 041049 28 NGPCRTPDDCEGELICINGICN 49 (217)
Q Consensus 28 ~~~c~~~~dc~g~l~c~~g~c~ 49 (217)
|.+|.....|.+..+|++|+|.
T Consensus 19 g~~C~~~~qC~~~s~C~~g~C~ 40 (52)
T PF01683_consen 19 GESCESDEQCIGGSVCVNGRCQ 40 (52)
T ss_pred CCCCCCcCCCCCcCEEcCCEeE
Confidence 6789999999999999999664
No 18
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=50.16 E-value=19 Score=23.96 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=15.1
Q ss_pred hhhhhH-HHHHHHHHHH-hhhhhh
Q 041049 3 KSLVSF-TIIFAMMFLP-LLSNAI 24 (217)
Q Consensus 3 ~~~~~~-~~~~~~~~~~-~~~~~~ 24 (217)
|-.|-. ++||.++|+| ||+|-.
T Consensus 5 K~~Vy~vV~ffv~LFifGflsnDp 28 (36)
T PF02532_consen 5 KIFVYTVVIFFVSLFIFGFLSNDP 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred EEeehhhHHHHHHHHhccccCCCC
Confidence 444544 6678888888 888765
No 19
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=45.26 E-value=65 Score=32.18 Aligned_cols=43 Identities=26% Similarity=0.431 Sum_probs=32.7
Q ss_pred CCCceEEEEeCCCCEEEEEEeecCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhcC
Q 041049 147 RCGHMIKITAQNGRSVMAKVVDECDSMHGCDSEHADEPPCDNDIVDGSDAVWSALGL 203 (217)
Q Consensus 147 ~CGk~I~It~~NGkSV~A~VVD~C~S~~GCd~~h~~~PpC~~n~lDLS~avF~aLg~ 203 (217)
.=+.+|+|+. ++|+++|+|.=. ++.- .++.+-||..+|++|+.
T Consensus 29 ~~~~rv~v~~-~~~~~~a~~~~~-~~~~------------~~g~~gls~~~~~~l~~ 71 (500)
T TIGR03327 29 HPGDRVRIES-GGKSVVGIVDST-DTLV------------EKGEIGLSHEVLEELGI 71 (500)
T ss_pred CCCCeEEEEe-CCEEEEEEEEcc-cccc------------cCCeeeccHHHHHHcCC
Confidence 3467899998 999999887533 3221 34689999999999984
No 20
>cd00150 PlantTI Plant trypsin inhibitors such as squash trypsin inhibitor. Plant proteinase inhibitors play important roles in natural plant defense. Proteinase inhibitors from squash seeds form an uniform family of small proteins cross-linked with three disulfide bridges.
Probab=45.02 E-value=16 Score=22.92 Aligned_cols=21 Identities=43% Similarity=1.042 Sum_probs=17.5
Q ss_pred CCCCCCCCCCCceEEe-ccccC
Q 041049 29 GPCRTPDDCEGELICI-NGICN 49 (217)
Q Consensus 29 ~~c~~~~dc~g~l~c~-~g~c~ 49 (217)
+.|+.-.||.++-||. ||-|.
T Consensus 6 m~Ck~DsDCl~~CiC~~~G~CG 27 (27)
T cd00150 6 MECKRDSDCLAECICLENGYCG 27 (27)
T ss_pred eeccccccccCCCEEccccccC
Confidence 5799999999999994 47773
No 21
>CHL00024 psbI photosystem II protein I
Probab=41.65 E-value=15 Score=24.38 Aligned_cols=22 Identities=36% Similarity=0.470 Sum_probs=15.0
Q ss_pred hhhhhH-HHHHHHHHHH-hhhhhh
Q 041049 3 KSLVSF-TIIFAMMFLP-LLSNAI 24 (217)
Q Consensus 3 ~~~~~~-~~~~~~~~~~-~~~~~~ 24 (217)
|-.|-. ++||.++|+| ||+|-.
T Consensus 5 Ki~Vy~vV~ffvsLFifGFlsnDp 28 (36)
T CHL00024 5 KLFVYTVVIFFVSLFIFGFLSNDP 28 (36)
T ss_pred EeeehhHHHHHHHHHHccccCCCC
Confidence 344443 6788888888 887755
No 22
>smart00286 PTI Plant trypsin inhibitors.
Probab=41.21 E-value=20 Score=22.73 Aligned_cols=21 Identities=43% Similarity=1.054 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCceEEe-ccccC
Q 041049 29 GPCRTPDDCEGELICI-NGICN 49 (217)
Q Consensus 29 ~~c~~~~dc~g~l~c~-~g~c~ 49 (217)
+.|+.-.||.++-||. ||-|.
T Consensus 8 m~Ck~DsDCl~~CiC~~~G~CG 29 (29)
T smart00286 8 MECKRDSDCMAECICLANGYCG 29 (29)
T ss_pred hccccccCcccCCEEccccccC
Confidence 5799999999999995 47774
No 23
>PRK02655 psbI photosystem II reaction center I protein I; Provisional
Probab=40.14 E-value=16 Score=24.48 Aligned_cols=22 Identities=27% Similarity=0.325 Sum_probs=14.9
Q ss_pred hhhhhH-HHHHHHHHHH-hhhhhh
Q 041049 3 KSLVSF-TIIFAMMFLP-LLSNAI 24 (217)
Q Consensus 3 ~~~~~~-~~~~~~~~~~-~~~~~~ 24 (217)
|-.|-. ++||.++|+| ||+|-.
T Consensus 5 Ki~Vy~vV~ffvsLFiFGflsnDP 28 (38)
T PRK02655 5 KISVYIVVFFFVGLFVFGFLSSDP 28 (38)
T ss_pred EeeehhhHHHHHHHHHcccCCCCC
Confidence 334443 6788888888 888755
No 24
>TIGR03170 flgA_cterm flagella basal body P-ring formation protein FlgA. This model describes a conserved C-terminal region of the flagellar basal body P-ring formation protein FlgA. This sequence region contains a SAF domain, now described by Pfam model pfam08666.
Probab=39.61 E-value=43 Score=25.86 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=21.0
Q ss_pred CCCCCceEEEEe-CCCCEEEEEEeec
Q 041049 145 GSRCGHMIKITA-QNGRSVMAKVVDE 169 (217)
Q Consensus 145 gs~CGk~I~It~-~NGkSV~A~VVD~ 169 (217)
...=|..|+|.+ .+||.+.|+|++.
T Consensus 92 ~g~~G~~I~V~N~~s~k~i~~~V~~~ 117 (122)
T TIGR03170 92 DGAVGDQIRVRNLSSGKIISGIVTGP 117 (122)
T ss_pred ccCCCCEEEEEECCCCCEEEEEEeCC
Confidence 345789999998 6899999999874
No 25
>PRK04350 thymidine phosphorylase; Provisional
Probab=37.99 E-value=1.1e+02 Score=30.64 Aligned_cols=44 Identities=23% Similarity=0.419 Sum_probs=32.0
Q ss_pred CCceEEEEeCCCCEEEEEEeecCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhcCC
Q 041049 148 CGHMIKITAQNGRSVMAKVVDECDSMHGCDSEHADEPPCDNDIVDGSDAVWSALGLD 204 (217)
Q Consensus 148 CGk~I~It~~NGkSV~A~VVD~C~S~~GCd~~h~~~PpC~~n~lDLS~avF~aLg~~ 204 (217)
=+.+|+|+. ++|+++|++.=.=+.. =.++.+-||..+|++|+..
T Consensus 23 ~~~rv~v~~-~~~~~~a~~~~~~~~~------------~~~~~~gl~~~~~~~l~~~ 66 (490)
T PRK04350 23 AGDRVEVRA-GGRSIIATLNITDDDL------------VGPGEIGLSESAFRRLGVS 66 (490)
T ss_pred cCCeEEEEc-CCeEEEEEEEeccccc------------cCCCcccccHHHHHHhCCC
Confidence 367999998 9999998874321101 1346799999999999943
No 26
>PF01666 DX: DX module; InterPro: IPR002593 This domain has no known function. It is found in several Caenorhabditis elegans proteins. The domain contains 6 conserved cysteines that probably form three disulphide bridges.
Probab=32.23 E-value=32 Score=25.81 Aligned_cols=24 Identities=29% Similarity=0.848 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCceEEec-----cccCCCC
Q 041049 29 GPCRTPDDCEGELICIN-----GICNDDP 52 (217)
Q Consensus 29 ~~c~~~~dc~g~l~c~~-----g~c~ddp 52 (217)
.-|.++.||...++|+. +.|=.||
T Consensus 48 ~~C~~N~DC~~~~VCV~~~~~~~~C~~nP 76 (76)
T PF01666_consen 48 SYCTSNRDCGSGSVCVRENSARGRCYYNP 76 (76)
T ss_pred cccccCcccCCCcEEEEEECCccEEeCCC
Confidence 57999999999999965 4666665
No 27
>PRK08515 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=30.16 E-value=65 Score=28.26 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=21.3
Q ss_pred CCCCCceEEEEeCCCCEEEEEEeec
Q 041049 145 GSRCGHMIKITAQNGRSVMAKVVDE 169 (217)
Q Consensus 145 gs~CGk~I~It~~NGkSV~A~VVD~ 169 (217)
...=|..|+|.+..||.|.|+|++.
T Consensus 192 ~G~~Gd~IrVrN~Sgkii~g~V~~~ 216 (222)
T PRK08515 192 DGNLGDIIQAKNKSNKILKAKVLSK 216 (222)
T ss_pred cCCCCCEEEEEeCCCCEEEEEEecC
Confidence 4567999999987899999999875
No 28
>PF00299 Squash: Squash family serine protease inhibitor; InterPro: IPR000737 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The squash inhibitors form one of a number of serine proteinase inhibitor families. They belong to MEROPS inhibitor family I7, clan IE. They are generally annotated as either trypsin or elastase inhibitors (MEROPS peptidase family S1, IPR001254 from INTERPRO). The proteins, found exclusively in the seeds of the cucurbitaceae, e.g. Citrullus lanatus (watermelon), Cucumis sativus (cucumber), Momordica charantia (balsam pear), are approximately 30 residues in length and contain 6 Cys residues, which form 3 disulphide bonds []. The inhibitors function by being taken up by a serine protease (such as trypsin), which cleaves the peptide bond between Arg/Lys and Ile residues in the N-terminal portion of the protein [, ]. Structural studies have shown that the inhibitor has an ellipsoidal shape, and is largely composed of beta-turns []. The fold and Cys connectivity of the proteins resembles that of potato carboxypeptidase A inhibitor [].; GO: 0004867 serine-type endopeptidase inhibitor activity; PDB: 1MCT_I 2IT8_A 1HA9_A 1IB9_A 2C4B_B 2PO8_A 1F2S_I 1W7Z_H 2LET_A 2ETI_A ....
Probab=29.87 E-value=25 Score=22.35 Aligned_cols=20 Identities=40% Similarity=1.014 Sum_probs=15.6
Q ss_pred CCCCCCCCCCCceEEe-cccc
Q 041049 29 GPCRTPDDCEGELICI-NGIC 48 (217)
Q Consensus 29 ~~c~~~~dc~g~l~c~-~g~c 48 (217)
+.|+.-.||.++-||. +|-|
T Consensus 8 m~Ck~DsDCl~~C~C~~~g~C 28 (29)
T PF00299_consen 8 MECKRDSDCLAGCICLENGYC 28 (29)
T ss_dssp CB-SSGGGSSTTEEEETTSEE
T ss_pred hhcccccCcccCCEEccCccc
Confidence 5799999999999994 4465
No 29
>PRK12618 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=29.78 E-value=72 Score=26.26 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=19.8
Q ss_pred CCCceEEEEe-CCCCEEEEEEeec
Q 041049 147 RCGHMIKITA-QNGRSVMAKVVDE 169 (217)
Q Consensus 147 ~CGk~I~It~-~NGkSV~A~VVD~ 169 (217)
.=|..|+|.+ ..||.|.|+|.+.
T Consensus 110 ~~Gd~IrV~N~~S~riV~g~V~~~ 133 (141)
T PRK12618 110 GVGDEIRVMNLSSRTTVSGRIAAD 133 (141)
T ss_pred CCCCEEEEEECCCCCEEEEEEecC
Confidence 4688999987 6899999999865
No 30
>smart00051 DSL delta serrate ligand.
Probab=28.52 E-value=30 Score=24.90 Aligned_cols=28 Identities=39% Similarity=0.757 Sum_probs=21.6
Q ss_pred hccCCCCCCCCCCCCCceEEeccccCCCCCCceeee
Q 041049 24 ISQCNGPCRTPDDCEGELICINGICNDDPEVGSHTC 59 (217)
Q Consensus 24 ~s~c~~~c~~~~dc~g~l~c~~g~c~ddp~~~t~ic 59 (217)
-..|.+-|+..+|+.+...| || .|..+|
T Consensus 27 G~~C~~~C~~~~d~~~~~~C-------d~-~G~~~C 54 (63)
T smart00051 27 GEGCNKFCRPRDDFFGHYTC-------DE-NGNKGC 54 (63)
T ss_pred CCccCCEeCcCccccCCccC-------Cc-CCCEec
Confidence 35789999999999888776 44 377788
No 31
>PF13144 SAF_2: SAF-like
Probab=27.49 E-value=82 Score=26.25 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=20.7
Q ss_pred CCCCCceEEEEeC-CCCEEEEEEeec
Q 041049 145 GSRCGHMIKITAQ-NGRSVMAKVVDE 169 (217)
Q Consensus 145 gs~CGk~I~It~~-NGkSV~A~VVD~ 169 (217)
...=|..|+|.+. .||.+.|+|++.
T Consensus 166 ~G~~G~~I~V~N~~S~k~v~g~V~~~ 191 (196)
T PF13144_consen 166 DGALGDTIRVKNLSSGKIVQGRVIGP 191 (196)
T ss_pred CCCCCCEEEEEECCCCCEEEEEEecC
Confidence 4567999999984 599999999875
No 32
>KOG4106 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.70 E-value=74 Score=26.27 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=19.9
Q ss_pred CCCCCCceEEEEeCCCCEEEEEEee
Q 041049 144 GGSRCGHMIKITAQNGRSVMAKVVD 168 (217)
Q Consensus 144 ~gs~CGk~I~It~~NGkSV~A~VVD 168 (217)
++++|...+-|+. ||||++|.==|
T Consensus 24 ~sp~lve~vavt~-nGRTIvawHP~ 47 (125)
T KOG4106|consen 24 DSPRLVEKVAVTA-NGRTIVAWHPP 47 (125)
T ss_pred CCcceeeeEEEec-CCcEEEEecCC
Confidence 4677999999998 99999987643
No 33
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=24.69 E-value=1.4e+02 Score=19.86 Aligned_cols=21 Identities=5% Similarity=0.137 Sum_probs=17.3
Q ss_pred CCceEEEEeCCCCEEEEEEeec
Q 041049 148 CGHMIKITAQNGRSVMAKVVDE 169 (217)
Q Consensus 148 CGk~I~It~~NGkSV~A~VVD~ 169 (217)
-||.|+|.. +++.+++++.+-
T Consensus 2 lG~~V~v~~-~~~~~~G~~~gI 22 (48)
T PF02237_consen 2 LGQEVRVET-GDGEIEGIAEGI 22 (48)
T ss_dssp TTSEEEEEE-TSCEEEEEEEEE
T ss_pred CCCEEEEEE-CCeEEEEEEEEE
Confidence 378999998 778889888765
No 34
>PRK06005 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=24.20 E-value=1e+02 Score=25.86 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=20.5
Q ss_pred CCCCceEEEEe-CCCCEEEEEEeec
Q 041049 146 SRCGHMIKITA-QNGRSVMAKVVDE 169 (217)
Q Consensus 146 s~CGk~I~It~-~NGkSV~A~VVD~ 169 (217)
..=|..|+|.+ ..||.|.++|.+.
T Consensus 128 G~~Gd~IrVrN~~Sgkiv~g~V~~~ 152 (160)
T PRK06005 128 GAAGDLIRVRNVDSGVIVSGTVLAD 152 (160)
T ss_pred CCCCCEEEEEECCCCCEEEEEEecC
Confidence 45789999997 6899999999875
No 35
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=23.74 E-value=54 Score=26.10 Aligned_cols=7 Identities=29% Similarity=0.639 Sum_probs=3.3
Q ss_pred CCCCcee
Q 041049 51 DPEVGSH 57 (217)
Q Consensus 51 dp~~~t~ 57 (217)
.|-.+|.
T Consensus 32 ~P~~gt~ 38 (130)
T PF12273_consen 32 QPIYGTR 38 (130)
T ss_pred CCcCCce
Confidence 4555543
No 36
>PRK07018 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=23.41 E-value=1e+02 Score=27.08 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=20.7
Q ss_pred CCCCCceEEEEe-CCCCEEEEEEeec
Q 041049 145 GSRCGHMIKITA-QNGRSVMAKVVDE 169 (217)
Q Consensus 145 gs~CGk~I~It~-~NGkSV~A~VVD~ 169 (217)
...=|..|+|.+ .+||.|.|+|++.
T Consensus 203 ~G~~Gd~IrVrN~~Sgk~i~g~V~~~ 228 (235)
T PRK07018 203 DGAVGQQIRVRNMASGQVVSGIVTGD 228 (235)
T ss_pred CCCCCCeEEEEECCCCCEEEEEEeCC
Confidence 356799999997 5899999999864
No 37
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=23.39 E-value=68 Score=27.81 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=20.7
Q ss_pred CchhhhhHHHHHHHHHHHhhhhhhccCCCCC
Q 041049 1 MAKSLVSFTIIFAMMFLPLLSNAISQCNGPC 31 (217)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~s~c~~~c 31 (217)
|.|.||-.+.++++.|++ ++.+.+||..+=
T Consensus 3 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 32 (205)
T PRK06231 3 LWKTRVFKLLLLSFSFLI-ISLFLVSCTENV 32 (205)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHccCCh
Confidence 457788877777766664 556777887763
No 38
>COG4332 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.81 E-value=1.6e+02 Score=26.19 Aligned_cols=52 Identities=17% Similarity=0.265 Sum_probs=39.0
Q ss_pred CCCceEEEEeCCCCEEEEEEeecCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhc
Q 041049 147 RCGHMIKITAQNGRSVMAKVVDECDSMHGCDSEHADEPPCDNDIVDGSDAVWSALG 202 (217)
Q Consensus 147 ~CGk~I~It~~NGkSV~A~VVD~C~S~~GCd~~h~~~PpC~~n~lDLS~avF~aLg 202 (217)
.|.-++||.+ |||-..|...=+|. -||..-++.-==+-|.=|.+|.+.++|-
T Consensus 30 ~cSg~fRvNA-q~K~LDvWlIYkC~---~Cd~tWN~~IfeR~~~~~Iep~lleal~ 81 (203)
T COG4332 30 TCSGKFRVNA-QGKVLDVWLIYKCT---HCDYTWNISIFERLNVSDIEPDLLEALM 81 (203)
T ss_pred eecCcEEEcC-CCcEEEEEEEEEee---ccCCccchhhhhccCcccCCHHHHHHHH
Confidence 4777899988 99999999999996 4776654432112245589999999996
No 39
>PRK06804 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=21.17 E-value=1.2e+02 Score=27.66 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=20.8
Q ss_pred CCCCCceEEEEe-CCCCEEEEEEeec
Q 041049 145 GSRCGHMIKITA-QNGRSVMAKVVDE 169 (217)
Q Consensus 145 gs~CGk~I~It~-~NGkSV~A~VVD~ 169 (217)
...=|..|+|.+ ..||.|.|+|++.
T Consensus 229 ~G~~Gd~IrVrN~~SgkvV~a~V~~~ 254 (261)
T PRK06804 229 NGRKGELIKVKNLSSGRVVTATVDGS 254 (261)
T ss_pred CCCCCCEEEEEECCCCCEEEEEEecC
Confidence 345799999997 5799999999874
Done!