Query 041050
Match_columns 408
No_of_seqs 240 out of 1451
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 03:17:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041050.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041050hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1222 Kinesin associated pro 100.0 7.1E-43 1.5E-47 335.8 24.3 373 1-382 199-606 (791)
2 PF05804 KAP: Kinesin-associat 100.0 1.8E-40 4E-45 345.2 31.5 370 1-382 188-592 (708)
3 KOG0166 Karyopherin (importin) 100.0 7.4E-29 1.6E-33 246.5 30.8 275 79-393 68-348 (514)
4 KOG0166 Karyopherin (importin) 100.0 1E-28 2.3E-33 245.4 25.7 311 65-396 72-436 (514)
5 COG5064 SRP1 Karyopherin (impo 100.0 4.4E-29 9.5E-34 232.2 16.7 278 85-380 79-428 (526)
6 PLN03200 cellulose synthase-in 99.9 1.7E-24 3.7E-29 243.2 30.6 264 124-406 429-736 (2102)
7 COG5064 SRP1 Karyopherin (impo 99.9 8.2E-26 1.8E-30 210.5 15.8 258 119-396 92-356 (526)
8 PLN03200 cellulose synthase-in 99.9 2.7E-23 5.9E-28 233.6 34.0 252 120-389 467-758 (2102)
9 KOG4224 Armadillo repeat prote 99.9 3.2E-23 6.9E-28 194.7 23.7 312 74-406 82-418 (550)
10 KOG4224 Armadillo repeat prote 99.9 6.2E-24 1.4E-28 199.5 17.8 254 122-395 190-446 (550)
11 PF05804 KAP: Kinesin-associat 99.8 2.8E-17 6E-22 172.2 25.8 248 120-395 270-519 (708)
12 KOG4199 Uncharacterized conser 99.8 1.1E-16 2.5E-21 149.5 23.3 255 128-400 177-451 (461)
13 KOG1048 Neural adherens juncti 99.7 4E-16 8.6E-21 160.4 24.7 286 76-403 232-690 (717)
14 KOG4199 Uncharacterized conser 99.7 2.8E-15 6.1E-20 140.3 23.0 237 124-379 129-385 (461)
15 KOG2122 Beta-catenin-binding p 99.7 3.5E-16 7.5E-21 166.9 15.9 261 123-398 322-607 (2195)
16 KOG1048 Neural adherens juncti 99.6 2.3E-14 5E-19 147.6 20.4 249 141-392 234-637 (717)
17 PF04826 Arm_2: Armadillo-like 99.6 2.2E-14 4.8E-19 134.2 18.7 182 177-382 8-191 (254)
18 PF04826 Arm_2: Armadillo-like 99.6 1E-13 2.3E-18 129.7 19.0 196 136-355 8-206 (254)
19 KOG2122 Beta-catenin-binding p 99.5 8.8E-14 1.9E-18 148.9 14.0 217 123-356 375-603 (2195)
20 cd00020 ARM Armadillo/beta-cat 99.5 1.5E-12 3.3E-17 107.3 14.7 117 135-253 2-119 (120)
21 cd00020 ARM Armadillo/beta-cat 99.5 2E-12 4.3E-17 106.6 14.8 118 219-354 2-120 (120)
22 PF10508 Proteasom_PSMB: Prote 99.3 2.9E-10 6.4E-15 117.4 23.2 214 145-379 43-256 (503)
23 KOG2160 Armadillo/beta-catenin 99.3 1.1E-09 2.3E-14 104.8 23.6 187 151-355 94-283 (342)
24 KOG2160 Armadillo/beta-catenin 99.3 3E-10 6.6E-15 108.5 18.9 177 119-295 103-282 (342)
25 PRK09687 putative lyase; Provi 99.3 4.2E-10 9.2E-15 107.4 18.3 186 141-379 24-236 (280)
26 KOG4500 Rho/Rac GTPase guanine 99.2 3.8E-10 8.3E-15 109.2 17.5 224 137-377 84-367 (604)
27 PF10508 Proteasom_PSMB: Prote 99.2 1.6E-09 3.4E-14 112.0 22.9 197 138-355 75-279 (503)
28 PRK09687 putative lyase; Provi 99.2 3.3E-09 7.1E-14 101.3 19.5 198 142-393 56-279 (280)
29 KOG1222 Kinesin associated pro 99.1 2.6E-08 5.6E-13 97.8 23.8 285 76-382 255-563 (791)
30 KOG3678 SARM protein (with ste 99.1 4.3E-09 9.4E-14 102.9 17.6 251 136-391 176-447 (832)
31 PF03224 V-ATPase_H_N: V-ATPas 99.1 1.3E-08 2.9E-13 99.0 19.7 222 142-383 57-301 (312)
32 cd00256 VATPase_H VATPase_H, r 99.0 2.4E-08 5.3E-13 99.7 19.0 209 144-354 147-425 (429)
33 KOG0168 Putative ubiquitin fus 99.0 4E-08 8.7E-13 102.0 20.3 232 128-379 199-439 (1051)
34 PF03224 V-ATPase_H_N: V-ATPas 98.9 4.9E-08 1.1E-12 95.0 16.8 189 141-346 106-306 (312)
35 KOG3678 SARM protein (with ste 98.9 7.9E-08 1.7E-12 94.2 15.5 176 174-368 173-350 (832)
36 KOG4646 Uncharacterized conser 98.8 5.7E-08 1.2E-12 80.4 11.4 131 142-275 18-150 (173)
37 KOG4646 Uncharacterized conser 98.8 8.8E-08 1.9E-12 79.3 10.7 149 182-349 17-165 (173)
38 KOG2759 Vacuolar H+-ATPase V1 98.7 4.1E-07 8.9E-12 88.5 16.3 208 147-355 163-439 (442)
39 PRK13800 putative oxidoreducta 98.7 2.1E-06 4.6E-11 94.9 24.2 216 141-393 622-864 (897)
40 KOG4500 Rho/Rac GTPase guanine 98.7 6.6E-07 1.4E-11 87.2 16.7 236 128-382 166-418 (604)
41 KOG0168 Putative ubiquitin fus 98.7 9E-07 2E-11 92.3 18.5 217 142-378 169-392 (1051)
42 PRK13800 putative oxidoreducta 98.7 9.8E-07 2.1E-11 97.6 20.3 203 142-392 686-895 (897)
43 KOG1293 Proteins containing ar 98.7 5.1E-06 1.1E-10 84.9 23.0 152 147-301 384-538 (678)
44 cd00256 VATPase_H VATPase_H, r 98.6 6.5E-06 1.4E-10 82.5 22.3 243 142-403 55-325 (429)
45 KOG0946 ER-Golgi vesicle-tethe 98.6 9E-06 2E-10 84.5 20.8 252 140-403 122-406 (970)
46 KOG0946 ER-Golgi vesicle-tethe 98.5 0.00019 4E-09 75.0 27.4 252 133-403 54-357 (970)
47 PF01602 Adaptin_N: Adaptin N 98.4 8.8E-06 1.9E-10 84.7 15.4 227 142-392 81-329 (526)
48 KOG1293 Proteins containing ar 98.3 1.5E-05 3.3E-10 81.5 14.4 146 193-356 388-535 (678)
49 PF00514 Arm: Armadillo/beta-c 98.2 2.1E-06 4.5E-11 57.1 4.8 40 255-294 1-40 (41)
50 PF01602 Adaptin_N: Adaptin N 98.2 6.8E-05 1.5E-09 78.0 17.9 232 142-391 116-364 (526)
51 PF05536 Neurochondrin: Neuroc 98.2 0.00021 4.6E-09 74.5 20.9 200 141-356 6-215 (543)
52 KOG2973 Uncharacterized conser 98.2 0.00011 2.4E-09 69.2 16.4 205 143-374 6-223 (353)
53 PF00514 Arm: Armadillo/beta-c 98.2 4.5E-06 9.8E-11 55.4 5.1 41 314-354 1-41 (41)
54 PTZ00429 beta-adaptin; Provisi 98.1 0.0015 3.3E-08 70.3 26.5 179 142-355 107-286 (746)
55 KOG2973 Uncharacterized conser 98.1 0.0006 1.3E-08 64.4 20.1 241 142-391 46-310 (353)
56 KOG2759 Vacuolar H+-ATPase V1 98.1 4.5E-05 9.7E-10 74.6 13.0 167 128-294 186-437 (442)
57 KOG2171 Karyopherin (importin) 98.0 0.00026 5.6E-09 76.9 18.3 191 185-397 352-547 (1075)
58 KOG1789 Endocytosis protein RM 98.0 0.00057 1.2E-08 73.3 20.2 246 142-393 1773-2113(2235)
59 KOG2171 Karyopherin (importin) 98.0 0.00037 8.1E-09 75.7 18.9 169 147-338 355-529 (1075)
60 PF13646 HEAT_2: HEAT repeats; 98.0 2.2E-05 4.8E-10 61.0 6.7 87 142-250 1-88 (88)
61 KOG1517 Guanine nucleotide bin 97.9 0.00023 5.1E-09 76.2 15.6 218 138-359 510-737 (1387)
62 TIGR02270 conserved hypothetic 97.9 0.0012 2.6E-08 66.5 20.1 197 142-390 88-290 (410)
63 PF09759 Atx10homo_assoc: Spin 97.9 4.6E-05 1E-09 60.9 8.0 68 198-265 2-71 (102)
64 KOG2734 Uncharacterized conser 97.9 0.0038 8.3E-08 61.6 22.1 238 118-374 103-369 (536)
65 TIGR02270 conserved hypothetic 97.9 0.00046 1E-08 69.4 16.2 154 139-354 53-207 (410)
66 PF09759 Atx10homo_assoc: Spin 97.9 7.4E-05 1.6E-09 59.8 8.0 68 157-224 3-72 (102)
67 PF13646 HEAT_2: HEAT repeats; 97.9 4.8E-05 1E-09 59.0 6.7 87 226-350 1-88 (88)
68 COG1413 FOG: HEAT repeat [Ener 97.8 0.0014 2.9E-08 64.3 18.1 157 140-356 43-211 (335)
69 COG5369 Uncharacterized conser 97.8 0.00015 3.3E-09 72.7 10.9 202 158-375 405-617 (743)
70 smart00185 ARM Armadillo/beta- 97.5 0.00021 4.5E-09 46.9 5.2 39 256-294 2-40 (41)
71 KOG1789 Endocytosis protein RM 97.5 0.0058 1.3E-07 66.0 18.0 147 154-303 1739-1894(2235)
72 PTZ00429 beta-adaptin; Provisi 97.5 0.018 4E-07 62.2 22.3 175 142-355 34-209 (746)
73 PF05536 Neurochondrin: Neuroc 97.5 0.0059 1.3E-07 63.8 17.9 154 182-355 6-169 (543)
74 KOG2023 Nuclear transport rece 97.5 0.0016 3.5E-08 67.1 12.9 208 144-376 94-309 (885)
75 PF10165 Ric8: Guanine nucleot 97.5 0.002 4.2E-08 65.8 13.5 175 203-395 2-217 (446)
76 COG1413 FOG: HEAT repeat [Ener 97.5 0.0033 7.2E-08 61.6 14.7 158 141-355 75-243 (335)
77 smart00185 ARM Armadillo/beta- 97.4 0.00039 8.5E-09 45.5 5.2 39 316-354 3-41 (41)
78 KOG2734 Uncharacterized conser 97.3 0.069 1.5E-06 53.1 21.2 194 165-376 109-328 (536)
79 PF13764 E3_UbLigase_R4: E3 ub 97.3 0.064 1.4E-06 58.2 22.7 253 135-402 112-415 (802)
80 PF13513 HEAT_EZ: HEAT-like re 97.3 0.00065 1.4E-08 47.9 5.2 55 239-293 1-55 (55)
81 COG5231 VMA13 Vacuolar H+-ATPa 97.2 0.017 3.6E-07 55.1 15.7 200 152-354 161-428 (432)
82 PF13513 HEAT_EZ: HEAT-like re 97.2 0.00068 1.5E-08 47.8 5.1 55 280-352 1-55 (55)
83 KOG4413 26S proteasome regulat 97.2 0.081 1.8E-06 50.8 19.8 222 132-366 120-345 (524)
84 PF12348 CLASP_N: CLASP N term 97.2 0.0049 1.1E-07 56.8 11.9 186 150-355 17-207 (228)
85 KOG1517 Guanine nucleotide bin 97.2 0.018 3.9E-07 62.4 16.8 180 157-355 487-672 (1387)
86 KOG1062 Vesicle coat complex A 97.1 0.051 1.1E-06 57.5 19.3 138 149-301 116-269 (866)
87 PF14664 RICTOR_N: Rapamycin-i 97.1 0.069 1.5E-06 53.2 19.6 223 142-389 27-262 (371)
88 PF10165 Ric8: Guanine nucleot 97.0 0.01 2.2E-07 60.6 13.3 135 161-295 2-168 (446)
89 KOG1059 Vesicle coat complex A 96.9 0.027 5.9E-07 58.9 15.2 185 142-356 146-367 (877)
90 KOG4151 Myosin assembly protei 96.9 0.014 3E-07 61.7 12.6 232 122-376 485-722 (748)
91 PF14664 RICTOR_N: Rapamycin-i 96.8 0.084 1.8E-06 52.6 16.9 184 170-376 14-198 (371)
92 KOG0212 Uncharacterized conser 96.7 0.015 3.3E-07 59.1 11.1 226 137-388 81-313 (675)
93 PF04063 DUF383: Domain of unk 96.7 0.02 4.4E-07 51.5 10.9 113 152-266 7-144 (192)
94 KOG2023 Nuclear transport rece 96.7 0.024 5.1E-07 58.9 12.1 148 141-295 129-285 (885)
95 COG5369 Uncharacterized conser 96.7 0.0085 1.8E-07 60.6 8.8 136 202-355 407-546 (743)
96 PF11841 DUF3361: Domain of un 96.7 0.056 1.2E-06 46.9 12.8 118 134-253 5-130 (160)
97 PF11698 V-ATPase_H_C: V-ATPas 96.7 0.0055 1.2E-07 50.4 6.3 70 225-294 44-114 (119)
98 KOG1059 Vesicle coat complex A 96.6 0.05 1.1E-06 57.0 14.2 180 161-355 127-329 (877)
99 KOG3036 Protein involved in ce 96.6 0.27 5.9E-06 45.4 17.1 136 158-294 97-246 (293)
100 KOG2611 Neurochondrin/leucine- 96.5 0.12 2.7E-06 51.8 15.8 135 143-278 14-164 (698)
101 PF11698 V-ATPase_H_C: V-ATPas 96.5 0.007 1.5E-07 49.8 6.0 71 267-354 44-115 (119)
102 PF08045 CDC14: Cell division 96.5 0.051 1.1E-06 50.9 12.5 99 155-253 106-206 (257)
103 COG5181 HSH155 U2 snRNP splice 96.5 0.0086 1.9E-07 61.5 7.7 207 142-356 606-831 (975)
104 PF11841 DUF3361: Domain of un 96.5 0.11 2.4E-06 45.1 13.4 122 217-355 4-132 (160)
105 KOG0213 Splicing factor 3b, su 96.5 0.025 5.3E-07 59.4 10.9 180 143-353 802-988 (1172)
106 KOG4413 26S proteasome regulat 96.3 0.088 1.9E-06 50.5 12.8 173 143-336 85-266 (524)
107 PF12348 CLASP_N: CLASP N term 96.3 0.061 1.3E-06 49.5 11.7 145 142-295 55-206 (228)
108 PF14668 RICTOR_V: Rapamycin-i 96.2 0.026 5.7E-07 42.3 7.3 68 199-267 4-71 (73)
109 COG5096 Vesicle coat complex, 96.1 0.4 8.7E-06 51.5 18.1 168 149-355 28-196 (757)
110 KOG1242 Protein containing ada 96.1 0.65 1.4E-05 48.1 18.6 191 142-355 218-445 (569)
111 PRK14707 hypothetical protein; 96.0 0.31 6.8E-06 56.8 17.4 227 142-388 165-396 (2710)
112 PF12755 Vac14_Fab1_bd: Vacuol 96.0 0.069 1.5E-06 42.5 9.2 90 157-253 3-95 (97)
113 KOG1062 Vesicle coat complex A 96.0 0.21 4.6E-06 53.0 14.8 94 194-295 306-414 (866)
114 KOG1077 Vesicle coat complex A 96.0 0.42 9.1E-06 50.3 16.7 183 166-367 315-501 (938)
115 KOG4151 Myosin assembly protei 95.9 0.078 1.7E-06 56.2 11.7 135 158-295 560-699 (748)
116 COG5215 KAP95 Karyopherin (imp 95.9 0.62 1.3E-05 48.0 17.2 222 145-392 99-353 (858)
117 KOG1061 Vesicle coat complex A 95.9 0.066 1.4E-06 56.5 10.8 205 142-379 88-293 (734)
118 KOG1241 Karyopherin (importin) 95.9 0.37 8E-06 51.0 16.0 227 154-387 144-427 (859)
119 PF11707 Npa1: Ribosome 60S bi 95.8 1.6 3.4E-05 42.9 19.9 205 183-401 58-308 (330)
120 PF04063 DUF383: Domain of unk 95.8 0.14 3E-06 46.2 11.4 119 240-376 10-157 (192)
121 PF08569 Mo25: Mo25-like; Int 95.8 0.97 2.1E-05 44.4 18.0 194 175-388 70-275 (335)
122 PF11701 UNC45-central: Myosin 95.8 0.061 1.3E-06 46.8 8.7 146 183-352 5-157 (157)
123 PF12717 Cnd1: non-SMC mitotic 95.6 0.57 1.2E-05 41.6 14.6 92 195-295 1-92 (178)
124 PF08569 Mo25: Mo25-like; Int 95.5 2 4.3E-05 42.2 19.0 203 134-358 70-287 (335)
125 COG5231 VMA13 Vacuolar H+-ATPa 95.5 0.13 2.9E-06 49.2 10.2 152 143-294 194-427 (432)
126 COG5096 Vesicle coat complex, 95.5 1.1 2.4E-05 48.3 18.3 168 190-396 28-196 (757)
127 PF08324 PUL: PUL domain; Int 95.4 0.85 1.8E-05 43.1 16.0 175 198-389 79-267 (268)
128 PRK14707 hypothetical protein; 95.4 0.66 1.4E-05 54.4 17.0 230 131-380 238-472 (2710)
129 KOG1242 Protein containing ada 95.4 0.39 8.4E-06 49.7 14.1 164 120-295 275-444 (569)
130 KOG2611 Neurochondrin/leucine- 95.4 0.33 7.2E-06 48.9 12.9 166 123-294 39-224 (698)
131 KOG3036 Protein involved in ce 95.2 1.5 3.2E-05 40.7 15.8 143 119-264 99-257 (293)
132 PF06025 DUF913: Domain of Unk 95.1 2.4 5.2E-05 42.4 18.5 102 177-278 101-208 (379)
133 KOG1824 TATA-binding protein-i 95.1 0.48 1E-05 51.4 13.9 101 236-362 943-1045(1233)
134 KOG0414 Chromosome condensatio 95.1 0.26 5.6E-06 54.5 12.2 141 183-355 921-1065(1251)
135 COG5181 HSH155 U2 snRNP splice 95.1 0.098 2.1E-06 54.0 8.5 148 183-354 606-759 (975)
136 KOG1241 Karyopherin (importin) 95.1 1.3 2.9E-05 47.0 16.9 209 146-378 223-461 (859)
137 KOG0213 Splicing factor 3b, su 95.1 0.13 2.9E-06 54.1 9.6 147 185-354 803-954 (1172)
138 PF12717 Cnd1: non-SMC mitotic 94.9 0.43 9.2E-06 42.4 11.5 92 238-355 1-93 (178)
139 KOG0567 HEAT repeat-containing 94.9 1.2 2.5E-05 41.8 14.3 171 135-355 62-250 (289)
140 PF04078 Rcd1: Cell differenti 94.9 0.57 1.2E-05 43.9 12.4 168 119-293 70-260 (262)
141 PF05004 IFRD: Interferon-rela 94.8 3.7 8E-05 39.9 18.7 191 142-353 45-256 (309)
142 PF08045 CDC14: Cell division 94.8 0.37 8.1E-06 45.2 11.1 97 197-293 106-205 (257)
143 PF12719 Cnd3: Nuclear condens 94.8 0.91 2E-05 43.8 14.3 169 183-379 28-210 (298)
144 KOG2259 Uncharacterized conser 94.7 0.11 2.3E-06 54.1 7.8 184 142-355 236-440 (823)
145 PF11701 UNC45-central: Myosin 94.7 0.23 5E-06 43.2 9.0 144 225-389 4-152 (157)
146 PF13764 E3_UbLigase_R4: E3 ub 94.7 1.9 4.1E-05 47.1 17.5 175 177-377 113-330 (802)
147 PF14668 RICTOR_V: Rapamycin-i 94.7 0.18 4E-06 37.8 7.1 67 157-224 4-70 (73)
148 PF05918 API5: Apoptosis inhib 94.6 1.2 2.7E-05 46.3 15.4 100 183-295 25-125 (556)
149 PF12755 Vac14_Fab1_bd: Vacuol 94.6 0.35 7.5E-06 38.5 9.0 90 199-293 3-94 (97)
150 KOG1060 Vesicle coat complex A 94.5 0.54 1.2E-05 50.1 12.4 166 147-356 294-460 (968)
151 PF12460 MMS19_C: RNAPII trans 94.5 2.1 4.6E-05 43.3 16.8 188 141-356 190-396 (415)
152 KOG0212 Uncharacterized conser 94.5 0.53 1.2E-05 48.3 11.9 191 142-358 210-410 (675)
153 KOG3665 ZYG-1-like serine/thre 94.4 0.42 9.1E-06 51.6 11.9 183 205-390 494-691 (699)
154 PF06371 Drf_GBD: Diaphanous G 94.1 1 2.2E-05 39.9 12.2 82 254-353 95-186 (187)
155 PF12719 Cnd3: Nuclear condens 94.1 2.7 5.9E-05 40.5 15.9 167 142-336 28-208 (298)
156 PF04078 Rcd1: Cell differenti 94.0 2.1 4.5E-05 40.2 14.1 135 159-294 69-217 (262)
157 KOG0567 HEAT repeat-containing 94.0 3.1 6.7E-05 39.1 14.9 160 142-354 38-216 (289)
158 KOG0414 Chromosome condensatio 94.0 1.1 2.3E-05 49.9 13.8 147 142-304 921-1072(1251)
159 PF02985 HEAT: HEAT repeat; I 93.9 0.072 1.6E-06 32.7 3.0 30 326-355 1-30 (31)
160 KOG2259 Uncharacterized conser 93.9 0.31 6.8E-06 50.8 9.1 192 145-357 203-405 (823)
161 PF06371 Drf_GBD: Diaphanous G 93.8 0.34 7.3E-06 43.0 8.4 81 214-294 97-186 (187)
162 PF05004 IFRD: Interferon-rela 93.8 2.8 6.1E-05 40.7 15.3 151 142-295 88-257 (309)
163 KOG1077 Vesicle coat complex A 93.6 5.5 0.00012 42.3 17.4 101 227-354 332-433 (938)
164 KOG1943 Beta-tubulin folding c 93.5 9 0.0002 42.6 19.5 230 134-379 336-595 (1133)
165 PF02985 HEAT: HEAT repeat; I 93.4 0.14 3.1E-06 31.3 3.7 28 142-169 2-29 (31)
166 PF07814 WAPL: Wings apart-lik 93.3 4.6 0.0001 40.1 16.2 91 142-233 23-115 (361)
167 KOG4653 Uncharacterized conser 93.1 3.6 7.7E-05 44.6 15.5 220 143-391 730-959 (982)
168 KOG3665 ZYG-1-like serine/thre 93.1 1.3 2.8E-05 48.0 12.7 169 163-349 494-692 (699)
169 COG5240 SEC21 Vesicle coat com 93.1 1.2 2.7E-05 45.9 11.7 194 150-373 350-576 (898)
170 KOG2999 Regulator of Rac1, req 92.9 3.7 8E-05 42.4 14.7 172 183-373 85-263 (713)
171 KOG1061 Vesicle coat complex A 92.8 1.7 3.7E-05 46.3 12.6 138 142-295 51-189 (734)
172 KOG4535 HEAT and armadillo rep 92.8 0.25 5.4E-06 49.8 6.2 172 196-383 405-590 (728)
173 KOG2999 Regulator of Rac1, req 92.8 5.5 0.00012 41.1 15.6 153 142-295 85-242 (713)
174 COG5098 Chromosome condensatio 92.5 0.46 1E-05 49.9 7.9 131 194-356 908-1039(1128)
175 KOG2956 CLIP-associating prote 92.4 13 0.00027 37.9 17.4 173 152-354 299-477 (516)
176 KOG2025 Chromosome condensatio 92.3 3.2 6.9E-05 44.1 13.6 109 139-256 84-192 (892)
177 PF12031 DUF3518: Domain of un 92.2 0.34 7.3E-06 44.8 5.8 123 154-278 80-228 (257)
178 COG5209 RCD1 Uncharacterized p 92.0 4.5 9.7E-05 37.2 12.6 136 158-294 118-267 (315)
179 KOG1240 Protein kinase contain 92.0 3.3 7.2E-05 46.4 13.9 192 141-355 463-726 (1431)
180 KOG2062 26S proteasome regulat 91.6 5.8 0.00013 42.4 14.6 66 268-359 556-623 (929)
181 KOG1824 TATA-binding protein-i 91.1 4.2 9.2E-05 44.5 13.3 212 146-379 526-747 (1233)
182 PF08324 PUL: PUL domain; Int 91.0 2.7 5.9E-05 39.7 11.1 147 143-295 66-231 (268)
183 PF05918 API5: Apoptosis inhib 90.9 5.4 0.00012 41.7 13.7 95 143-250 26-121 (556)
184 KOG2062 26S proteasome regulat 90.7 1.9 4.1E-05 45.9 10.0 124 142-283 556-682 (929)
185 PF12460 MMS19_C: RNAPII trans 90.5 5.4 0.00012 40.4 13.4 108 183-295 273-394 (415)
186 KOG2274 Predicted importin 9 [ 90.5 7.5 0.00016 42.4 14.5 153 183-355 532-690 (1005)
187 COG5215 KAP95 Karyopherin (imp 90.3 13 0.00028 38.7 15.4 211 151-388 189-430 (858)
188 PF07814 WAPL: Wings apart-lik 90.0 9.5 0.00021 37.9 14.3 93 183-276 23-116 (361)
189 KOG2025 Chromosome condensatio 89.6 3.8 8.3E-05 43.5 11.3 128 240-391 61-188 (892)
190 COG5218 YCG1 Chromosome conden 89.4 5 0.00011 41.8 11.6 129 241-393 67-197 (885)
191 KOG1967 DNA repair/transcripti 88.4 5.1 0.00011 43.8 11.4 154 174-349 861-1019(1030)
192 KOG0301 Phospholipase A2-activ 88.2 23 0.0005 37.5 15.6 160 195-378 557-728 (745)
193 COG5218 YCG1 Chromosome conden 88.0 33 0.00072 36.0 16.4 106 139-253 90-195 (885)
194 PF12031 DUF3518: Domain of un 87.5 2.1 4.5E-05 39.7 6.9 81 155-235 139-227 (257)
195 PF06025 DUF913: Domain of Unk 87.2 34 0.00074 34.2 19.7 186 160-363 4-241 (379)
196 PF01347 Vitellogenin_N: Lipop 87.2 15 0.00033 39.0 14.6 173 182-397 396-591 (618)
197 KOG1967 DNA repair/transcripti 87.1 9 0.00019 41.9 12.3 181 184-388 818-1016(1030)
198 PF08826 DMPK_coil: DMPK coile 86.9 9.5 0.00021 27.5 8.9 59 22-94 1-59 (61)
199 KOG4464 Signaling protein RIC- 86.6 14 0.0003 37.0 12.4 155 184-356 48-233 (532)
200 COG5240 SEC21 Vesicle coat com 86.5 46 0.001 34.9 17.1 67 144-213 268-334 (898)
201 COG5116 RPN2 26S proteasome re 86.3 9.1 0.0002 39.8 11.3 99 225-355 552-651 (926)
202 KOG1058 Vesicle coat complex C 86.3 54 0.0012 35.5 18.4 25 271-295 322-346 (948)
203 COG5209 RCD1 Uncharacterized p 85.9 5.8 0.00013 36.4 8.8 141 202-361 120-275 (315)
204 KOG1058 Vesicle coat complex C 85.6 15 0.00033 39.4 12.9 209 120-355 120-347 (948)
205 KOG0915 Uncharacterized conser 85.4 79 0.0017 37.0 18.9 187 183-390 1000-1196(1702)
206 KOG1832 HIV-1 Vpr-binding prot 85.3 2.2 4.8E-05 46.2 6.7 123 172-295 592-773 (1516)
207 KOG1820 Microtubule-associated 85.3 17 0.00038 39.9 13.7 180 149-354 262-443 (815)
208 PF07106 TBPIP: Tat binding pr 85.2 6.4 0.00014 34.5 8.8 92 2-93 57-157 (169)
209 KOG0211 Protein phosphatase 2A 85.1 43 0.00093 36.7 16.4 150 196-376 493-645 (759)
210 KOG1060 Vesicle coat complex A 84.9 46 0.00099 36.2 15.9 134 143-295 38-172 (968)
211 KOG1020 Sister chromatid cohes 84.6 18 0.00038 41.9 13.5 133 228-391 820-955 (1692)
212 KOG1240 Protein kinase contain 83.9 55 0.0012 37.3 16.6 208 142-356 424-687 (1431)
213 KOG1832 HIV-1 Vpr-binding prot 83.6 17 0.00037 39.9 12.2 268 119-404 329-649 (1516)
214 PF10363 DUF2435: Protein of u 83.0 4.4 9.5E-05 31.8 6.1 66 228-295 7-72 (92)
215 KOG2274 Predicted importin 9 [ 83.0 51 0.0011 36.3 15.6 202 151-378 461-671 (1005)
216 PRK09169 hypothetical protein; 82.9 52 0.0011 40.0 16.8 149 141-291 164-315 (2316)
217 COG5098 Chromosome condensatio 82.5 26 0.00056 37.6 12.8 130 152-296 908-1038(1128)
218 PF11865 DUF3385: Domain of un 82.1 19 0.00042 31.3 10.4 33 183-215 12-44 (160)
219 PF08167 RIX1: rRNA processing 81.8 21 0.00045 31.2 10.6 69 142-211 27-97 (165)
220 KOG2032 Uncharacterized conser 81.8 21 0.00046 36.5 11.6 140 150-293 268-413 (533)
221 KOG1078 Vesicle coat complex C 81.8 38 0.00083 36.6 14.0 64 268-353 468-531 (865)
222 KOG2137 Protein kinase [Signal 81.2 19 0.00042 38.4 11.6 133 182-339 390-522 (700)
223 PF14662 CCDC155: Coiled-coil 81.1 25 0.00055 31.4 10.7 77 20-96 3-82 (193)
224 smart00638 LPD_N Lipoprotein N 80.7 23 0.00051 37.3 12.6 131 142-292 395-542 (574)
225 KOG0964 Structural maintenance 80.0 12 0.00026 41.3 9.7 111 57-177 450-564 (1200)
226 KOG1991 Nuclear transport rece 79.9 85 0.0018 35.0 16.1 111 182-295 411-532 (1010)
227 KOG2137 Protein kinase [Signal 79.8 14 0.00029 39.5 10.0 138 135-279 384-521 (700)
228 KOG1943 Beta-tubulin folding c 79.4 1.1E+02 0.0023 34.6 16.7 187 142-353 381-610 (1133)
229 PF01347 Vitellogenin_N: Lipop 79.3 42 0.0009 35.7 14.0 196 142-387 397-613 (618)
230 KOG0211 Protein phosphatase 2A 79.3 55 0.0012 35.8 14.6 172 193-391 248-423 (759)
231 PF12830 Nipped-B_C: Sister ch 79.3 46 0.00099 29.6 13.6 140 141-295 9-167 (187)
232 KOG1991 Nuclear transport rece 78.8 33 0.00071 38.1 12.6 134 238-390 431-571 (1010)
233 KOG0915 Uncharacterized conser 78.6 27 0.00058 40.6 12.2 153 139-296 1129-1307(1702)
234 KOG2676 Uncharacterized conser 78.4 2.8 6.1E-05 40.9 4.2 52 244-295 375-429 (478)
235 PF13251 DUF4042: Domain of un 78.2 26 0.00057 31.2 10.1 111 225-355 40-175 (182)
236 KOG0413 Uncharacterized conser 78.1 12 0.00026 41.4 9.0 91 196-295 945-1035(1529)
237 PF13251 DUF4042: Domain of un 77.5 47 0.001 29.6 11.5 137 156-295 2-174 (182)
238 COG5116 RPN2 26S proteasome re 76.7 20 0.00043 37.5 9.7 62 143-212 554-616 (926)
239 KOG2956 CLIP-associating prote 76.2 97 0.0021 31.7 14.7 140 144-295 333-477 (516)
240 KOG0977 Nuclear envelope prote 75.6 14 0.00031 38.4 8.7 95 15-109 89-197 (546)
241 smart00638 LPD_N Lipoprotein N 75.4 84 0.0018 33.1 14.9 135 226-397 395-547 (574)
242 KOG4653 Uncharacterized conser 75.2 37 0.00081 37.1 11.7 92 194-294 739-834 (982)
243 PRK11637 AmiB activator; Provi 75.1 62 0.0014 32.8 13.3 75 22-96 44-118 (428)
244 cd03569 VHS_Hrs_Vps27p VHS dom 74.8 10 0.00023 32.3 6.4 84 325-408 41-139 (142)
245 KOG4535 HEAT and armadillo rep 74.8 11 0.00023 38.6 7.2 117 222-355 44-180 (728)
246 KOG0413 Uncharacterized conser 74.8 20 0.00044 39.7 9.6 126 153-295 944-1073(1529)
247 PF14726 RTTN_N: Rotatin, an a 74.1 27 0.00059 27.7 8.1 67 180-249 29-95 (98)
248 PF12530 DUF3730: Protein of u 74.0 74 0.0016 29.4 13.9 138 183-355 2-152 (234)
249 KOG2676 Uncharacterized conser 73.9 3.6 7.9E-05 40.2 3.6 63 202-264 376-440 (478)
250 PF11865 DUF3385: Domain of un 73.8 26 0.00056 30.5 8.7 33 142-174 12-45 (160)
251 KOG0301 Phospholipase A2-activ 73.6 1.3E+02 0.0029 32.1 16.3 167 153-346 557-738 (745)
252 PF12530 DUF3730: Protein of u 72.7 80 0.0017 29.2 16.6 136 143-295 3-151 (234)
253 PRK09169 hypothetical protein; 72.4 1.9E+02 0.0041 35.7 17.2 154 136-292 201-358 (2316)
254 KOG1248 Uncharacterized conser 72.0 54 0.0012 37.1 12.3 148 142-295 740-898 (1176)
255 KOG2032 Uncharacterized conser 70.6 68 0.0015 33.0 11.7 101 236-354 269-371 (533)
256 PF08167 RIX1: rRNA processing 69.7 71 0.0015 27.8 10.7 108 183-295 27-143 (165)
257 PF11707 Npa1: Ribosome 60S bi 69.6 1.2E+02 0.0025 29.7 17.3 159 134-294 51-236 (330)
258 PF00038 Filament: Intermediat 69.5 34 0.00074 32.9 9.5 36 57-92 79-114 (312)
259 KOG1949 Uncharacterized conser 68.4 1.1E+02 0.0025 33.0 13.1 141 146-293 180-329 (1005)
260 KOG1788 Uncharacterized conser 67.5 1.3E+02 0.0029 34.2 13.6 80 259-355 901-983 (2799)
261 PF07926 TPR_MLP1_2: TPR/MLP1/ 66.7 64 0.0014 27.0 9.4 78 17-94 37-118 (132)
262 cd03568 VHS_STAM VHS domain fa 66.4 29 0.00063 29.6 7.3 74 266-355 37-111 (144)
263 cd03569 VHS_Hrs_Vps27p VHS dom 66.3 28 0.0006 29.6 7.2 72 141-212 42-115 (142)
264 cd03561 VHS VHS domain family; 65.8 35 0.00077 28.5 7.7 71 142-212 39-113 (133)
265 PF01365 RYDR_ITPR: RIH domain 65.4 27 0.00058 31.6 7.4 103 214-336 33-153 (207)
266 PF04499 SAPS: SIT4 phosphatas 64.7 47 0.001 34.4 9.7 80 174-253 55-147 (475)
267 PF15035 Rootletin: Ciliary ro 64.5 61 0.0013 28.9 9.2 58 14-71 56-113 (182)
268 KOG1020 Sister chromatid cohes 64.5 1.7E+02 0.0037 34.5 14.3 105 142-257 818-925 (1692)
269 PF10363 DUF2435: Protein of u 64.0 26 0.00056 27.5 6.0 71 142-214 5-75 (92)
270 PF11559 ADIP: Afadin- and alp 63.9 91 0.002 26.5 10.1 53 18-70 38-90 (151)
271 cd03567 VHS_GGA VHS domain fam 63.1 79 0.0017 26.8 9.3 70 225-295 39-116 (139)
272 smart00288 VHS Domain present 62.0 36 0.00079 28.5 7.0 71 142-212 39-112 (133)
273 KOG2933 Uncharacterized conser 61.6 57 0.0012 31.6 8.8 128 198-353 104-233 (334)
274 cd03568 VHS_STAM VHS domain fa 60.9 40 0.00086 28.8 7.1 71 142-212 39-111 (144)
275 KOG1243 Protein kinase [Genera 60.3 26 0.00056 37.4 6.9 186 137-352 327-513 (690)
276 cd03567 VHS_GGA VHS domain fam 60.3 46 0.001 28.2 7.4 73 266-354 38-116 (139)
277 PF08216 CTNNBL: Catenin-beta- 60.3 12 0.00026 30.3 3.5 42 158-200 64-105 (108)
278 PF00038 Filament: Intermediat 60.1 43 0.00094 32.2 8.2 79 16-94 52-137 (312)
279 PRK10884 SH3 domain-containing 59.7 52 0.0011 29.9 8.0 15 35-49 96-110 (206)
280 cd03561 VHS VHS domain family; 59.2 58 0.0013 27.2 7.8 71 182-253 38-111 (133)
281 KOG1243 Protein kinase [Genera 59.0 49 0.0011 35.4 8.6 72 221-295 327-398 (690)
282 PRK11637 AmiB activator; Provi 58.4 62 0.0013 32.9 9.3 77 17-93 46-122 (428)
283 PRK10884 SH3 domain-containing 58.1 1.2E+02 0.0025 27.7 10.0 7 135-141 172-178 (206)
284 PF12709 Kinetocho_Slk19: Cent 57.9 66 0.0014 24.9 7.0 22 57-78 60-81 (87)
285 KOG1566 Conserved protein Mo25 57.7 1.9E+02 0.0041 28.1 17.1 206 135-356 74-288 (342)
286 PF08216 CTNNBL: Catenin-beta- 57.1 16 0.00035 29.5 3.8 42 243-284 64-105 (108)
287 PRK04778 septation ring format 56.3 41 0.00088 35.6 7.8 78 28-105 344-421 (569)
288 KOG0996 Structural maintenance 56.2 86 0.0019 35.7 10.2 27 141-167 692-718 (1293)
289 KOG1248 Uncharacterized conser 55.5 3.7E+02 0.0081 30.8 22.5 182 145-354 702-898 (1176)
290 KOG1822 Uncharacterized conser 54.6 1.7E+02 0.0037 35.2 12.5 29 225-253 959-987 (2067)
291 COG2433 Uncharacterized conser 54.0 92 0.002 32.9 9.4 63 35-97 432-497 (652)
292 PF11932 DUF3450: Protein of u 53.6 88 0.0019 29.2 8.9 15 35-49 45-59 (251)
293 PF06685 DUF1186: Protein of u 53.5 2E+02 0.0043 27.0 14.6 64 221-295 70-142 (249)
294 KOG4464 Signaling protein RIC- 53.0 1E+02 0.0022 31.1 9.2 133 228-377 49-198 (532)
295 PF01365 RYDR_ITPR: RIH domain 52.9 44 0.00096 30.1 6.6 101 257-377 34-153 (207)
296 KOG1566 Conserved protein Mo25 52.9 2.3E+02 0.005 27.6 16.3 187 175-380 73-271 (342)
297 KOG1962 B-cell receptor-associ 52.7 44 0.00096 30.5 6.3 61 35-95 130-193 (216)
298 PF14663 RasGEF_N_2: Rapamycin 52.4 48 0.001 27.0 6.0 40 182-223 9-48 (115)
299 PF08506 Cse1: Cse1; InterPro 52.3 2.5E+02 0.0055 28.0 13.8 132 153-290 224-370 (370)
300 PF09766 FimP: Fms-interacting 51.6 58 0.0013 32.3 7.6 43 14-56 83-125 (355)
301 cd07653 F-BAR_CIP4-like The F- 51.4 1.6E+02 0.0034 27.3 10.2 52 22-80 95-146 (251)
302 PF04388 Hamartin: Hamartin pr 51.3 2.1E+02 0.0046 31.0 12.3 114 140-253 4-139 (668)
303 PF14663 RasGEF_N_2: Rapamycin 51.2 90 0.002 25.4 7.5 38 326-363 9-46 (115)
304 smart00288 VHS Domain present 51.2 78 0.0017 26.4 7.3 72 267-354 38-111 (133)
305 PF07888 CALCOCO1: Calcium bin 51.0 1.1E+02 0.0024 32.0 9.6 60 31-90 156-215 (546)
306 PF07888 CALCOCO1: Calcium bin 50.1 1.4E+02 0.0031 31.2 10.2 14 77-90 223-236 (546)
307 PF11559 ADIP: Afadin- and alp 50.0 1.6E+02 0.0035 25.0 10.4 65 35-99 69-133 (151)
308 PF14662 CCDC155: Coiled-coil 49.9 1.3E+02 0.0029 26.9 8.6 14 35-48 39-52 (193)
309 PF06810 Phage_GP20: Phage min 49.8 52 0.0011 28.5 6.1 21 30-50 18-38 (155)
310 PF14389 Lzipper-MIP1: Leucine 49.7 63 0.0014 25.1 6.0 70 17-96 14-83 (88)
311 PF04156 IncA: IncA protein; 49.2 1.5E+02 0.0032 26.2 9.3 51 37-87 100-150 (191)
312 KOG1962 B-cell receptor-associ 49.0 44 0.00094 30.6 5.6 9 20-28 136-144 (216)
313 COG2433 Uncharacterized conser 48.9 1.1E+02 0.0024 32.3 9.1 31 57-87 478-508 (652)
314 KOG1820 Microtubule-associated 48.8 4.2E+02 0.0091 29.5 14.4 174 194-394 265-441 (815)
315 KOG1078 Vesicle coat complex C 48.3 4.1E+02 0.0089 29.2 17.9 65 144-214 249-314 (865)
316 PF06685 DUF1186: Protein of u 48.1 2.3E+02 0.0051 26.6 10.6 111 135-252 68-181 (249)
317 PF09726 Macoilin: Transmembra 47.8 1.3E+02 0.0029 32.7 10.1 122 20-141 490-625 (697)
318 PF10481 CENP-F_N: Cenp-F N-te 47.7 1.3E+02 0.0027 28.6 8.4 33 59-91 161-193 (307)
319 PF01603 B56: Protein phosphat 47.5 2.4E+02 0.0053 28.4 11.5 78 133-211 126-204 (409)
320 PF10521 DUF2454: Protein of u 47.1 1.9E+02 0.0042 27.5 10.2 69 142-210 121-202 (282)
321 PF10212 TTKRSYEDQ: Predicted 47.1 95 0.0021 32.2 8.3 76 30-105 411-486 (518)
322 PF11864 DUF3384: Domain of un 46.5 3.4E+02 0.0075 27.8 14.5 91 240-353 230-329 (464)
323 PF10521 DUF2454: Protein of u 46.5 2.2E+02 0.0048 27.0 10.6 71 182-253 120-202 (282)
324 PF06012 DUF908: Domain of Unk 46.4 83 0.0018 30.8 7.7 62 157-218 239-304 (329)
325 KOG1525 Sister chromatid cohes 45.0 71 0.0015 37.1 7.7 144 141-295 260-405 (1266)
326 PF02403 Seryl_tRNA_N: Seryl-t 45.0 1.6E+02 0.0034 23.4 8.8 62 31-92 42-106 (108)
327 PF14225 MOR2-PAG1_C: Cell mor 44.9 2.8E+02 0.006 26.2 11.0 123 142-280 113-242 (262)
328 TIGR02894 DNA_bind_RsfA transc 44.7 1.1E+02 0.0024 26.6 7.1 12 19-30 51-62 (161)
329 KOG2933 Uncharacterized conser 44.7 2.9E+02 0.0063 26.9 10.6 140 142-294 90-233 (334)
330 PF06428 Sec2p: GDP/GTP exchan 44.0 1.4E+02 0.0031 23.8 7.2 62 26-93 2-63 (100)
331 KOG0996 Structural maintenance 43.2 1.3E+02 0.0029 34.3 9.1 56 18-73 377-432 (1293)
332 KOG0995 Centromere-associated 43.1 1.1E+02 0.0023 32.1 8.0 16 77-92 342-357 (581)
333 PF15573 Imm27: Immunity prote 43.0 99 0.0022 28.4 6.8 86 133-238 36-125 (259)
334 PF12001 DUF3496: Domain of un 42.9 1E+02 0.0022 25.1 6.3 55 35-95 10-64 (111)
335 PF04111 APG6: Autophagy prote 42.4 1.9E+02 0.004 28.2 9.3 50 45-94 63-112 (314)
336 KOG4603 TBP-1 interacting prot 41.6 1.9E+02 0.0041 25.4 8.0 38 36-73 104-143 (201)
337 PF09789 DUF2353: Uncharacteri 41.5 2.9E+02 0.0064 26.9 10.3 92 15-106 62-172 (319)
338 PF14225 MOR2-PAG1_C: Cell mor 41.0 3.2E+02 0.0069 25.8 14.9 134 174-340 104-243 (262)
339 PF07200 Mod_r: Modifier of ru 40.9 1.4E+02 0.0031 25.2 7.6 53 17-69 33-85 (150)
340 KOG2073 SAP family cell cycle 40.8 5.6E+02 0.012 28.6 14.3 62 174-235 183-250 (838)
341 PF14726 RTTN_N: Rotatin, an a 40.7 1.6E+02 0.0035 23.3 7.1 65 226-291 32-96 (98)
342 KOG3564 GTPase-activating prot 40.1 1.7E+02 0.0037 30.0 8.6 78 15-92 25-102 (604)
343 KOG2005 26S proteasome regulat 39.8 5.2E+02 0.011 28.0 14.0 34 135-168 43-76 (878)
344 PF04849 HAP1_N: HAP1 N-termin 39.6 1.5E+02 0.0032 28.7 7.9 76 18-93 213-288 (306)
345 PF15290 Syntaphilin: Golgi-lo 39.5 2E+02 0.0044 27.4 8.5 75 17-93 67-143 (305)
346 PF08317 Spc7: Spc7 kinetochor 39.4 2.8E+02 0.0061 27.0 10.2 77 19-95 171-258 (325)
347 PF04111 APG6: Autophagy prote 39.4 3E+02 0.0065 26.8 10.3 12 78-89 110-121 (314)
348 KOG0933 Structural maintenance 39.3 3.7E+02 0.008 30.5 11.5 55 130-184 513-569 (1174)
349 KOG2264 Exostosin EXT1L [Signa 39.2 1.2E+02 0.0027 31.7 7.6 71 23-93 77-147 (907)
350 PF04156 IncA: IncA protein; 39.2 2.7E+02 0.0058 24.5 10.2 27 21-47 91-117 (191)
351 KOG2029 Uncharacterized conser 39.1 1.4E+02 0.0029 31.8 8.0 95 198-294 266-363 (697)
352 PF10211 Ax_dynein_light: Axon 39.0 1.9E+02 0.004 25.9 8.2 58 36-93 124-182 (189)
353 PF03130 HEAT_PBS: PBS lyase H 39.0 20 0.00044 20.9 1.3 26 156-191 1-26 (27)
354 PF15070 GOLGA2L5: Putative go 38.8 3.4E+02 0.0074 29.2 11.3 34 17-50 35-68 (617)
355 PF00790 VHS: VHS domain; Int 38.8 63 0.0014 27.2 4.9 70 142-211 44-118 (140)
356 PRK04778 septation ring format 38.3 1.2E+02 0.0026 32.1 7.9 76 17-92 288-366 (569)
357 PF09755 DUF2046: Uncharacteri 38.0 3.2E+02 0.007 26.5 9.9 86 19-105 35-130 (310)
358 PF06012 DUF908: Domain of Unk 37.8 2.2E+02 0.0047 27.8 9.2 61 197-258 237-301 (329)
359 PF00790 VHS: VHS domain; Int 37.5 51 0.0011 27.8 4.1 63 326-388 43-110 (140)
360 PF12726 SEN1_N: SEN1 N termin 37.4 2.8E+02 0.006 30.4 10.8 57 239-295 495-553 (727)
361 PF08389 Xpo1: Exportin 1-like 37.2 2.3E+02 0.005 23.2 8.9 126 155-290 3-148 (148)
362 KOG3850 Predicted membrane pro 37.1 2.8E+02 0.006 27.7 9.3 26 18-47 264-289 (455)
363 smart00567 EZ_HEAT E-Z type HE 36.9 47 0.001 19.5 2.8 27 155-191 2-28 (30)
364 PF04869 Uso1_p115_head: Uso1 36.6 4.1E+02 0.0089 25.8 11.5 156 225-397 35-232 (312)
365 PF12325 TMF_TATA_bd: TATA ele 36.4 2.1E+02 0.0045 23.6 7.4 17 32-48 44-60 (120)
366 PF13851 GAS: Growth-arrest sp 36.4 2.7E+02 0.0058 25.2 8.8 57 23-79 32-88 (201)
367 KOG0804 Cytoplasmic Zn-finger 36.1 1.8E+02 0.0039 29.6 8.1 26 70-95 424-449 (493)
368 PF12325 TMF_TATA_bd: TATA ele 36.0 2.5E+02 0.0054 23.2 8.6 45 27-71 18-62 (120)
369 cd03565 VHS_Tom1 VHS domain fa 35.3 2.8E+02 0.006 23.5 9.9 71 225-295 39-115 (141)
370 PF15573 Imm27: Immunity prote 35.2 63 0.0014 29.6 4.4 75 227-337 49-123 (259)
371 PF06818 Fez1: Fez1; InterPro 35.0 2.2E+02 0.0048 25.8 7.8 55 17-71 9-63 (202)
372 PF12783 Sec7_N: Guanine nucle 34.8 2.5E+02 0.0054 24.2 8.2 81 132-215 65-149 (168)
373 PF08506 Cse1: Cse1; InterPro 34.7 4.7E+02 0.01 26.0 15.4 131 196-349 225-370 (370)
374 KOG1087 Cytosolic sorting prot 34.3 80 0.0017 32.5 5.6 84 325-408 38-138 (470)
375 COG4477 EzrA Negative regulato 34.3 1.4E+02 0.0031 31.0 7.2 77 18-94 288-367 (570)
376 PF06810 Phage_GP20: Phage min 34.0 1.4E+02 0.003 25.8 6.3 55 16-70 11-68 (155)
377 PF08647 BRE1: BRE1 E3 ubiquit 33.5 2.1E+02 0.0045 22.4 6.8 62 33-94 11-72 (96)
378 COG4026 Uncharacterized protei 33.3 3.1E+02 0.0068 25.2 8.4 7 157-163 258-264 (290)
379 cd03572 ENTH_epsin_related ENT 33.1 2.8E+02 0.0061 22.9 9.6 86 246-352 22-117 (122)
380 KOG2005 26S proteasome regulat 33.0 2.9E+02 0.0062 29.9 9.2 82 201-295 622-704 (878)
381 KOG0250 DNA repair protein RAD 33.0 2.7E+02 0.0058 31.7 9.5 60 35-94 368-428 (1074)
382 cd00197 VHS_ENTH_ANTH VHS, ENT 32.8 2.6E+02 0.0055 22.3 7.6 71 267-353 38-114 (115)
383 PF05911 DUF869: Plant protein 32.4 2.8E+02 0.0061 30.6 9.6 69 26-94 618-686 (769)
384 PF12231 Rif1_N: Rap1-interact 32.4 5.1E+02 0.011 25.7 13.2 176 151-353 4-203 (372)
385 PF11932 DUF3450: Protein of u 31.5 4.3E+02 0.0093 24.5 10.2 66 21-93 24-89 (251)
386 KOG2580 Mitochondrial import i 31.2 2.2E+02 0.0047 28.8 7.7 64 5-73 50-113 (459)
387 PF08317 Spc7: Spc7 kinetochor 31.1 3.4E+02 0.0073 26.4 9.3 54 39-92 209-262 (325)
388 PHA01750 hypothetical protein 30.9 60 0.0013 23.6 2.8 33 37-69 40-72 (75)
389 PF04388 Hamartin: Hamartin pr 30.9 6.6E+02 0.014 27.3 12.1 60 279-355 81-141 (668)
390 PF10458 Val_tRNA-synt_C: Valy 30.8 88 0.0019 22.7 3.9 15 35-49 14-28 (66)
391 cd07643 I-BAR_IMD_MIM Inverse 30.5 3.2E+02 0.0068 25.3 8.1 61 16-76 66-134 (231)
392 PHA02562 46 endonuclease subun 30.4 3.7E+02 0.0079 28.1 10.1 8 6-13 290-297 (562)
393 KOG0250 DNA repair protein RAD 30.3 4E+02 0.0086 30.4 10.2 17 183-200 572-588 (1074)
394 PF07923 N1221: N1221-like pro 30.2 89 0.0019 30.0 5.0 55 323-377 58-127 (293)
395 PF07923 N1221: N1221-like pro 30.1 1.1E+02 0.0025 29.3 5.7 51 141-191 61-126 (293)
396 PF12830 Nipped-B_C: Sister ch 30.0 3.9E+02 0.0085 23.6 10.3 108 142-255 47-168 (187)
397 PF05546 She9_MDM33: She9 / Md 29.9 1.2E+02 0.0026 27.5 5.3 55 40-94 33-87 (207)
398 PF12054 DUF3535: Domain of un 29.6 2.9E+02 0.0064 28.2 8.8 54 154-212 101-156 (441)
399 PF08172 CASP_C: CASP C termin 29.6 63 0.0014 30.3 3.7 41 31-71 92-132 (248)
400 COG4942 Membrane-bound metallo 29.4 4.2E+02 0.0092 26.9 9.5 17 32-48 38-54 (420)
401 KOG4643 Uncharacterized coiled 29.2 4.2E+02 0.009 30.0 9.9 68 19-86 503-573 (1195)
402 PF05701 WEMBL: Weak chloropla 29.0 4E+02 0.0087 27.9 9.9 73 20-92 283-355 (522)
403 PF04821 TIMELESS: Timeless pr 28.8 5E+02 0.011 24.5 13.5 183 142-356 15-210 (266)
404 PF12711 Kinesin-relat_1: Kine 28.8 2.3E+02 0.0049 22.0 5.9 52 34-88 26-84 (86)
405 PF14666 RICTOR_M: Rapamycin-i 28.7 4.7E+02 0.01 24.1 14.3 129 195-353 77-224 (226)
406 PF14961 BROMI: Broad-minded p 28.5 3.9E+02 0.0085 30.9 9.9 203 158-373 484-746 (1296)
407 PLN03205 ATR interacting prote 28.5 6.4E+02 0.014 25.6 13.3 121 142-263 325-455 (652)
408 KOG3990 Uncharacterized conser 28.4 3.7E+02 0.008 25.2 8.2 47 40-87 247-294 (305)
409 PF05377 FlaC_arch: Flagella a 28.3 82 0.0018 22.2 3.1 35 36-70 4-38 (55)
410 PF04880 NUDE_C: NUDE protein, 28.2 39 0.00084 29.6 1.9 35 21-55 13-47 (166)
411 KOG0891 DNA-dependent protein 27.5 8.8E+02 0.019 30.6 13.2 183 147-355 488-678 (2341)
412 TIGR02894 DNA_bind_RsfA transc 27.5 1.3E+02 0.0027 26.2 4.8 11 16-26 82-92 (161)
413 PF14182 YgaB: YgaB-like prote 27.4 1.9E+02 0.0041 22.0 5.0 39 27-70 19-57 (79)
414 PF03962 Mnd1: Mnd1 family; I 27.4 4.5E+02 0.0097 23.4 9.7 70 22-92 66-135 (188)
415 KOG2199 Signal transducing ada 27.0 2.7E+02 0.0059 27.9 7.5 83 326-408 46-143 (462)
416 PF02183 HALZ: Homeobox associ 26.9 84 0.0018 21.1 2.9 11 39-49 5-15 (45)
417 PF14389 Lzipper-MIP1: Leucine 26.8 61 0.0013 25.1 2.6 28 58-85 13-40 (88)
418 PF10805 DUF2730: Protein of u 26.7 2.7E+02 0.0058 22.3 6.4 28 17-44 34-61 (106)
419 PRK00888 ftsB cell division pr 26.4 1.8E+02 0.0039 23.3 5.3 42 60-104 34-75 (105)
420 KOG1410 Nuclear transport rece 26.4 8.8E+02 0.019 26.5 12.0 146 183-354 7-157 (1082)
421 COG1196 Smc Chromosome segrega 26.4 4E+02 0.0086 31.1 10.1 12 37-48 826-837 (1163)
422 PF10267 Tmemb_cc2: Predicted 26.1 3.5E+02 0.0075 27.3 8.3 58 19-86 213-270 (395)
423 PRK10722 hypothetical protein; 26.0 2.1E+02 0.0044 26.7 6.2 41 26-73 159-203 (247)
424 PF12329 TMF_DNA_bd: TATA elem 25.9 2.8E+02 0.0061 20.6 6.1 36 16-51 10-45 (74)
425 PF10168 Nup88: Nuclear pore c 25.2 3E+02 0.0066 30.1 8.3 43 63-105 596-642 (717)
426 PF09304 Cortex-I_coil: Cortex 25.2 3.7E+02 0.008 21.7 7.0 70 32-101 9-78 (107)
427 KOG2391 Vacuolar sorting prote 25.2 2.6E+02 0.0056 27.4 6.9 17 36-52 222-238 (365)
428 PF14915 CCDC144C: CCDC144C pr 25.0 6.1E+02 0.013 24.4 9.3 40 57-96 67-106 (305)
429 PF06160 EzrA: Septation ring 25.0 2.8E+02 0.006 29.4 7.9 27 79-105 391-417 (560)
430 KOG2129 Uncharacterized conser 25.0 2.9E+02 0.0062 27.9 7.3 27 56-82 288-314 (552)
431 PF07106 TBPIP: Tat binding pr 24.7 1.6E+02 0.0036 25.5 5.3 11 77-87 96-106 (169)
432 PF03978 Borrelia_REV: Borreli 24.5 2.7E+02 0.0058 24.1 6.1 40 32-73 47-86 (160)
433 PF13001 Ecm29: Proteasome sta 24.1 6.6E+02 0.014 26.1 10.4 60 277-355 385-444 (501)
434 PF06160 EzrA: Septation ring 24.0 3E+02 0.0065 29.1 7.9 74 17-90 284-360 (560)
435 PF05529 Bap31: B-cell recepto 24.0 5.1E+02 0.011 22.9 8.8 14 35-48 128-141 (192)
436 PF09730 BicD: Microtubule-ass 23.9 5.9E+02 0.013 27.9 10.1 17 77-93 131-147 (717)
437 PF04977 DivIC: Septum formati 23.9 1.6E+02 0.0034 21.6 4.4 11 76-86 40-50 (80)
438 KOG1103 Predicted coiled-coil 23.8 6.9E+02 0.015 24.6 9.4 87 12-98 87-184 (561)
439 KOG0963 Transcription factor/C 23.7 8.2E+02 0.018 26.2 10.6 38 13-50 230-267 (629)
440 PF07539 DRIM: Down-regulated 23.5 2.1E+02 0.0046 24.2 5.5 33 262-294 13-45 (141)
441 PF10234 Cluap1: Clusterin-ass 23.4 3.5E+02 0.0076 25.7 7.4 59 35-93 172-237 (267)
442 COG1579 Zn-ribbon protein, pos 23.4 6.1E+02 0.013 23.6 10.4 16 34-49 47-62 (239)
443 COG5374 Uncharacterized conser 23.3 3.5E+02 0.0075 24.1 6.7 31 18-48 115-152 (192)
444 PF04899 MbeD_MobD: MbeD/MobD 22.8 2.2E+02 0.0048 21.1 4.7 33 24-56 12-45 (70)
445 KOG0999 Microtubule-associated 22.6 3.1E+02 0.0067 28.8 7.2 49 34-93 172-220 (772)
446 PF05529 Bap31: B-cell recepto 22.4 1.9E+02 0.004 25.7 5.3 30 56-92 157-186 (192)
447 KOG4005 Transcription factor X 22.3 6.4E+02 0.014 23.5 9.1 33 180-212 197-229 (292)
448 PF06156 DUF972: Protein of un 22.3 2.7E+02 0.0058 22.5 5.6 36 36-71 19-54 (107)
449 KOG2152 Sister chromatid cohes 22.2 3E+02 0.0064 30.0 7.2 70 183-253 334-404 (865)
450 PF00261 Tropomyosin: Tropomyo 22.1 3.5E+02 0.0076 24.9 7.2 54 18-71 15-68 (237)
451 KOG0977 Nuclear envelope prote 21.9 4E+02 0.0086 28.1 8.0 38 53-90 176-213 (546)
452 PF04064 DUF384: Domain of unk 21.8 3E+02 0.0066 19.5 5.7 46 206-252 2-47 (58)
453 cd03565 VHS_Tom1 VHS domain fa 21.8 4.9E+02 0.011 21.9 7.8 72 267-354 39-115 (141)
454 PRK09039 hypothetical protein; 21.6 4.6E+02 0.01 25.8 8.2 45 25-69 123-167 (343)
455 PF04499 SAPS: SIT4 phosphatas 21.3 7.4E+02 0.016 25.6 10.0 90 260-353 56-147 (475)
456 PF14666 RICTOR_M: Rapamycin-i 21.2 6.5E+02 0.014 23.2 14.0 129 154-294 78-224 (226)
457 PF08826 DMPK_coil: DMPK coile 21.2 2.2E+02 0.0048 20.5 4.3 25 25-49 32-56 (61)
458 PF00901 Orbi_VP5: Orbivirus o 21.1 5.3E+02 0.012 26.7 8.5 11 344-354 422-432 (508)
459 COG1196 Smc Chromosome segrega 20.9 6.4E+02 0.014 29.4 10.4 38 57-94 443-480 (1163)
460 PF12463 DUF3689: Protein of u 20.8 7.8E+02 0.017 23.9 14.4 125 217-358 2-177 (303)
461 KOG1791 Uncharacterized conser 20.5 1.5E+03 0.033 27.2 14.6 200 135-353 1434-1659(1758)
462 PF06409 NPIP: Nuclear pore co 20.4 4.7E+02 0.01 24.2 7.2 12 59-70 154-165 (265)
463 KOG0161 Myosin class II heavy 20.4 7.8E+02 0.017 30.4 10.8 36 18-53 936-971 (1930)
464 COG2919 Septum formation initi 20.3 2.4E+02 0.0052 23.0 5.1 46 57-105 54-99 (117)
465 PF06005 DUF904: Protein of un 20.1 3.7E+02 0.0081 19.9 7.9 58 23-87 9-66 (72)
466 PF05278 PEARLI-4: Arabidopsis 20.1 7E+02 0.015 23.7 8.6 17 86-102 233-249 (269)
467 PF05266 DUF724: Protein of un 20.1 6.3E+02 0.014 22.6 8.2 74 16-89 104-181 (190)
468 PRK05431 seryl-tRNA synthetase 20.0 4.1E+02 0.009 27.0 7.8 40 57-96 70-109 (425)
No 1
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-43 Score=335.75 Aligned_cols=373 Identities=15% Similarity=0.153 Sum_probs=328.0
Q ss_pred CeeeeeccCCC---CCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHh
Q 041050 1 MHVLFYDTGFE---PGASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKR 77 (408)
Q Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (408)
||||||||+|+ |.+.|||+|++||.+++||++|++.|.+|+.+.|+... .+++++++++|+.++.|+|++...+|+
T Consensus 199 iyifFcfst~tkfh~li~~ykIGtLCmn~idhElkRye~w~~El~k~krs~d-e~p~netLk~e~dr~~kklk~~~~KQe 277 (791)
T KOG1222|consen 199 IYIFFCFSTYTKFHPLIVQYKIGTLCMNAIDHELKRYEFWIAELKKTKRSTD-EKPKNETLKEEIDRLNKKLKTAIRKQE 277 (791)
T ss_pred eeeeeeccccccccchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhhcccc-cCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 79999999998 99999999999999999999999999999999998876 688899999999999999999999999
Q ss_pred hhHHHHHHHHhhhhhhhHHHHHHHhhhhcccccccccccc-----cchhhhhhcCCCCchHHHHHHhcCHHHHHHhhcCC
Q 041050 78 KLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLD-----KHSQFRDSGNGQKAPITKLFEQVGLHKILSLLESE 152 (408)
Q Consensus 78 ~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~-----~~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~ 152 (408)
++.+...++..++.+....+.|||++.+...+++.+.+.+ ..+.|++.+|.+.+|...+.+.|.|++|+.++.+.
T Consensus 278 qLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 278 QLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999887766 57899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHH
Q 041050 153 DANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTT 232 (408)
Q Consensus 153 ~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~l 232 (408)
+++++...++.|.|++++..++.+++..|.+|.|..+|.+ .+....|+..++.++.+ ++.+.++..+++|+.++..
T Consensus 358 h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~---d~~~~iA~~~lYh~S~d-D~~K~MfayTdci~~lmk~ 433 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDS---DTKHGIALNMLYHLSCD-DDAKAMFAYTDCIKLLMKD 433 (791)
T ss_pred CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCC---cccchhhhhhhhhhccC-cHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999984 24456689999999999 9999999999999999988
Q ss_pred hhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh-cCCCHHHHHHHHHHHHHhhcc---------------
Q 041050 233 AADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV-RCGHPDVLSQVARGIANFAKC--------------- 296 (408)
Q Consensus 233 L~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL-~~~~~~v~~~a~~aL~nL~~~--------------- 296 (408)
+..+.+..+.......+.|||.+..|.+.+++..|+..|+... +..|+-+.+ .++|++.+
T Consensus 434 v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK----~vRniSqHeg~tqn~FidyvgdL 509 (791)
T KOG1222|consen 434 VLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMK----VVRNISQHEGATQNMFIDYVGDL 509 (791)
T ss_pred HHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHH----HHHHhhhccchHHHHHHHHHHHH
Confidence 7778888888888899999999999999999988998888755 555554332 22222221
Q ss_pred -------chhh-hhHHHhhhhhc-cCChhhHHHHHhcCcHHHHHHhccCC--CHHHHHHHHHHHHHHccCchhHHHHHhC
Q 041050 297 -------ESRA-ATQVRFIRCTA-TGVKSGRSLLIEDGALPWIVQNANNE--AAPIRRHIELALCHLAQHEVNAREMISG 365 (408)
Q Consensus 297 -------~~~~-~~~~~~~i~~~-~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~a~~aL~~La~~~~~~~~l~~~ 365 (408)
++++ ..+-.|+++++ ..+.++...+.+...+||+...|.++ ..++....+.++++++.+..++.-++.+
T Consensus 510 a~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a 589 (791)
T KOG1222|consen 510 AGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPA 589 (791)
T ss_pred HHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCcc
Confidence 1111 12223445554 35677888888999999999999876 6779999999999999999999999999
Q ss_pred CcHHHHHHHHhcCCHHH
Q 041050 366 GALWELVRISRDCSRED 382 (408)
Q Consensus 366 g~i~~L~~ll~~~~~~~ 382 (408)
|.++.|++++++++.+|
T Consensus 590 ~~i~tlieLL~a~QeDD 606 (791)
T KOG1222|consen 590 KLIDTLIELLQACQEDD 606 (791)
T ss_pred ccHHHHHHHHHhhcccc
Confidence 99999999999988776
No 2
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=100.00 E-value=1.8e-40 Score=345.21 Aligned_cols=370 Identities=18% Similarity=0.173 Sum_probs=322.8
Q ss_pred CeeeeeccCCC---CCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHh
Q 041050 1 MHVLFYDTGFE---PGASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKR 77 (408)
Q Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (408)
||||||||+|+ ++.+|+|+|+.||+++|+|++|++.|.+|+.++++..++ . ...++++++..|+|+....+|+
T Consensus 188 ~~iF~~fS~f~~fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~-~---~~~~~~~~~~~kk~~~l~~kQe 263 (708)
T PF05804_consen 188 IYIFFCFSNFSQFHPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEE-K---PEAKKDYEKELKKLQTLIRKQE 263 (708)
T ss_pred HHHHHHHHhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-c---hhhhhhHHHHHHHHHHHHHHHH
Confidence 69999999999 999999999999999999999999999999999886431 1 1337888999999999999999
Q ss_pred hhHHHHHHHHhhhhhhhHHHHHHHhhhhcccccccccccc-----cchhhhhhcCCCCchHHHHHHhcCHHHHHHhhcCC
Q 041050 78 KLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLD-----KHSQFRDSGNGQKAPITKLFEQVGLHKILSLLESE 152 (408)
Q Consensus 78 ~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~-----~~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~ 152 (408)
++.+...++..++++......+|++......+++.+.+.+ ....|++++|.+.+|...|.+.|.+++|+.+++++
T Consensus 264 qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~ 343 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSE 343 (708)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCC
Confidence 9999999999999999999999999888888888876555 45789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHH
Q 041050 153 DANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTT 232 (408)
Q Consensus 153 ~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~l 232 (408)
+.+++..++++|.||++++..|..+++.|.+|+|+.+|.+ +..+..++.+|+|||.+ ++++..+..++++|.++.+
T Consensus 344 ~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d---~~~~~val~iLy~LS~d-d~~r~~f~~TdcIp~L~~~ 419 (708)
T PF05804_consen 344 NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKD---PNFREVALKILYNLSMD-DEARSMFAYTDCIPQLMQM 419 (708)
T ss_pred CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCC---CchHHHHHHHHHHhccC-HhhHHHHhhcchHHHHHHH
Confidence 9999999999999999999999999999999999999983 34667799999999999 9999999999999999998
Q ss_pred hhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh-cCCCHHHHHHHHHHHHHhhccc--------------
Q 041050 233 AADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV-RCGHPDVLSQVARGIANFAKCE-------------- 297 (408)
Q Consensus 233 L~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL-~~~~~~v~~~a~~aL~nL~~~~-------------- 297 (408)
+..++++.+...+++++.||+.++.+.+.+++.||++.|+... +..|+-+. ..++|++.++
T Consensus 420 Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLl----KlIRNiS~h~~~~k~~f~~~i~~L 495 (708)
T PF05804_consen 420 LLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLL----KLIRNISQHDGPLKELFVDFIGDL 495 (708)
T ss_pred HHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHH----HHHHHHHhcCchHHHHHHHHHHHH
Confidence 8777788888889999999999999999999999999998866 45554433 3555555433
Q ss_pred ---------hhhhhHHHhhhhhcc-CChhhHHHHHhcCcHHHHHHhccCC--CHHHHHHHHHHHHHHccCchhHHHHHhC
Q 041050 298 ---------SRAATQVRFIRCTAT-GVKSGRSLLIEDGALPWIVQNANNE--AAPIRRHIELALCHLAQHEVNAREMISG 365 (408)
Q Consensus 298 ---------~~~~~~~~~~i~~~~-~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~a~~aL~~La~~~~~~~~l~~~ 365 (408)
.+...+..|+++|+. .+.++...+.+.+.+|+|..+|.++ ++++..+++..++++|.++.++..+++.
T Consensus 496 ~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~s 575 (708)
T PF05804_consen 496 AKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKS 575 (708)
T ss_pred HHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhC
Confidence 112344446677764 4557777777899999999999765 6789999999999999999999999999
Q ss_pred CcHHHHHHHHhcCCHHH
Q 041050 366 GALWELVRISRDCSRED 382 (408)
Q Consensus 366 g~i~~L~~ll~~~~~~~ 382 (408)
|.++.|+.++.+.+++|
T Consensus 576 gli~~Li~LL~~kqeDd 592 (708)
T PF05804_consen 576 GLIPTLIELLNAKQEDD 592 (708)
T ss_pred ChHHHHHHHHHhhCchH
Confidence 99999999999888766
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.4e-29 Score=246.52 Aligned_cols=275 Identities=20% Similarity=0.325 Sum_probs=239.1
Q ss_pred hHHHHHHHHhhhhhhhHHHHH-HHhhhhcccccccccccccchhhhhhcCCCCchHHHHHHhcCHHHHHHhhc-CCCHHH
Q 041050 79 LEEEIVILRSQLLQLTFEADQ-MQKCLERGEFGNTFTGLDKHSQFRDSGNGQKAPITKLFEQVGLHKILSLLE-SEDANV 156 (408)
Q Consensus 79 ~~~~~~~l~~~l~~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~-s~~~~v 156 (408)
....+..+.|..++..+++.+ .|+.++++ .++++..++..|.||.++.+|. ..++.+
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~---------------------~~ppi~~vi~~G~v~~lV~~l~~~~~~~l 126 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKE---------------------RNPPIDEVIQSGVVPRLVEFLSRDDNPTL 126 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccC---------------------CCCCHHHHHHcCcHHHHHHHHccCCChhH
Confidence 556667777777777776665 66666655 5689999999999999999998 667999
Q ss_pred HHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhc
Q 041050 157 RIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAAD 235 (408)
Q Consensus 157 ~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~ 235 (408)
+..|+|+|.|+|. +.+....+++.|++|.++.++.+ +++.+++.|+|||+|++.+++..|+.+++.|++++|+.++..
T Consensus 127 q~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s-~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~ 205 (514)
T KOG0166|consen 127 QFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS-PSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNK 205 (514)
T ss_pred HHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC-CcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcc
Confidence 9999999999998 77888889999999999999994 789999999999999999999999999999999999999865
Q ss_pred CCCHHHHHHHHHHHHHHh--CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccC
Q 041050 236 AEDPQTLRMVAGAIANLC--GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATG 313 (408)
Q Consensus 236 ~~~~~v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~ 313 (408)
.....+++.+.|+|.||| .+|.....-+ ..+++.|..++.+.|++|+..|+|||++|+. |
T Consensus 206 ~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v-~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd-----------------g 267 (514)
T KOG0166|consen 206 SDKLSMLRNATWTLSNLCRGKNPSPPFDVV-APILPALLRLLHSTDEEVLTDACWALSYLTD-----------------G 267 (514)
T ss_pred ccchHHHHHHHHHHHHHHcCCCCCCcHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-----------------C
Confidence 444579999999999999 3343332222 3689999999999999999999999999997 7
Q ss_pred ChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHH-HHhCCcHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041050 314 VKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNARE-MISGGALWELVRISRDCSREDIRSLAHRTLS 392 (408)
Q Consensus 314 ~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~-l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 392 (408)
..+..+.+++.|++|.|+++|.+.+..++..|..+++|++++.+..+. ++..|+++.|..++..+..+.+++.|.|+++
T Consensus 268 ~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iS 347 (514)
T KOG0166|consen 268 SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTIS 347 (514)
T ss_pred ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHH
Confidence 888888899999999999999999999999999999999999766655 5599999999999997767779999999988
Q ss_pred c
Q 041050 393 S 393 (408)
Q Consensus 393 ~ 393 (408)
+
T Consensus 348 N 348 (514)
T KOG0166|consen 348 N 348 (514)
T ss_pred H
Confidence 7
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1e-28 Score=245.44 Aligned_cols=311 Identities=18% Similarity=0.245 Sum_probs=243.1
Q ss_pred HHHhHHHHHHHHhhhHHHHHHHHhhhhhhhHHHHHHHhhhhcccccccccccc-cchhh-----hhhc-CCCCchHHHHH
Q 041050 65 LHKTLEDETLQKRKLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLD-KHSQF-----RDSG-NGQKAPITKLF 137 (408)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~-----l~~l-s~~~~~~~~l~ 137 (408)
+.+.+.+....+-..-..+..+.|.... +..+.--+. +....++..+.+.+ ..++| +.++ +|..+..+.++
T Consensus 72 ~~~~~S~~~~~q~~a~~~~rkllS~~~~-ppi~~vi~~-G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv 149 (514)
T KOG0166|consen 72 LAALYSDDPQQQLTATQAFRKLLSKERN-PPIDEVIQS-GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVV 149 (514)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHccCCC-CCHHHHHHc-CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccc
Confidence 3333444444444555555666665444 222211222 22222333332222 33344 4666 78888999999
Q ss_pred HhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC---
Q 041050 138 EQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNA--- 213 (408)
Q Consensus 138 ~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~--- 213 (408)
+.|.+|.++.++.+++.+++++|+|+|+|+++ .+..|..+++.|++++|+.++..+....+.+.++|+|.|||.++
T Consensus 150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~ 229 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPS 229 (514)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999 78999999999999999999875433355566666666666654
Q ss_pred ---------------------------------------hhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-
Q 041050 214 ---------------------------------------EANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC- 253 (408)
Q Consensus 214 ---------------------------------------~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~- 253 (408)
++..+.+++.|++|.|+.+| ...++.++..++++++|++
T Consensus 230 P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL-~~~~~~v~~PaLRaiGNIvt 308 (514)
T KOG0166|consen 230 PPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLL-GHSSPKVVTPALRAIGNIVT 308 (514)
T ss_pred CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHH-cCCCcccccHHHhhccceee
Confidence 55668899999999999999 5566788999999999998
Q ss_pred CCchhHHHHHhcccHHHHHHhhc-CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHH
Q 041050 254 GNDKLQMKLRSEGGIRALLGMVR-CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQ 332 (408)
Q Consensus 254 ~~~~~~~~i~~~g~l~~L~~lL~-~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~ 332 (408)
+++...+.+++.|+++.|..++. ++...++++|||+|+|++. |+.+..+.++++|++|+|+.
T Consensus 309 G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA-----------------G~~~qiqaVida~l~p~Li~ 371 (514)
T KOG0166|consen 309 GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA-----------------GNQEQIQAVIDANLIPVLIN 371 (514)
T ss_pred ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc-----------------CCHHHHHHHHHcccHHHHHH
Confidence 99999999999999999999997 6666699999999999998 99999999999999999999
Q ss_pred hccCCCHHHHHHHHHHHHHHccC--chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhccHh
Q 041050 333 NANNEAAPIRRHIELALCHLAQH--EVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSSSLT 396 (408)
Q Consensus 333 lL~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~ 396 (408)
++++.+.++|++|+||++|++.+ ++...++++.|.+++|..+|. ..+.++...+...+.+-..
T Consensus 372 ~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~-~~D~~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 372 LLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLT-CPDVKIILVALDGLENILK 436 (514)
T ss_pred HHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhccc-CCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 566788899999999999995 5555556666665554443
No 5
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.96 E-value=4.4e-29 Score=232.24 Aligned_cols=278 Identities=18% Similarity=0.222 Sum_probs=232.0
Q ss_pred HHHhhhhhhhHHHH-HHHhhhhccccc------------ccccccc----cchhh-----hhhc-CCCCchHHHHHHhcC
Q 041050 85 ILRSQLLQLTFEAD-QMQKCLERGEFG------------NTFTGLD----KHSQF-----RDSG-NGQKAPITKLFEQVG 141 (408)
Q Consensus 85 ~l~~~l~~~~~~~~-~~r~~~~~~~~~------------~~~~~~~----~~~~~-----l~~l-s~~~~~~~~l~~~~~ 141 (408)
.|.|.+-+...++. +.|+-++++... +++++++ .-++| +.++ ||.....+-+++.|+
T Consensus 79 ~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~A 158 (526)
T COG5064 79 QLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGA 158 (526)
T ss_pred HHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCc
Confidence 34455555555444 588888887532 3334432 11333 4666 678888888999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCC-CCHHHHHHHHHHHHHhccCC------
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSF-EDETIRRVAAGAIANLAMNA------ 213 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~-~~~~v~~~A~~aL~nLa~~~------ 213 (408)
||.++++|.+++.+++++++|+|+|+++ .+..|+.+.+.|++.+++.++.++ .+..+.+.+.|.|.|||...
T Consensus 159 VPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w 238 (526)
T COG5064 159 VPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDW 238 (526)
T ss_pred hHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCch
Confidence 9999999999999999999999999999 788899999999999999998754 23567777888888887754
Q ss_pred ------------------------------------hhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCc
Q 041050 214 ------------------------------------EANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GND 256 (408)
Q Consensus 214 ------------------------------------~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~ 256 (408)
.+..+.+.+.|..++|+++| .+++..++..+++.++|+. +++
T Consensus 239 ~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElL-s~~sa~iqtPalR~vGNIVTG~D 317 (526)
T COG5064 239 SNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELL-SHESAKIQTPALRSVGNIVTGSD 317 (526)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHh-cCccccccCHHHHhhcCeeecCc
Confidence 23346677888888999998 4577789999999999998 888
Q ss_pred hhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC
Q 041050 257 KLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN 336 (408)
Q Consensus 257 ~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~ 336 (408)
...+.+++.|+++++..+|.++...+++++||+++|++. |+.+..+.+++.+.+|+|+++|.+
T Consensus 318 ~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA-----------------Gnteqiqavid~nliPpLi~lls~ 380 (526)
T COG5064 318 DQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA-----------------GNTEQIQAVIDANLIPPLIHLLSS 380 (526)
T ss_pred cceehheecccHHHHHHHhcChhhhhhhhhheeeccccc-----------------CCHHHHHHHHhcccchHHHHHHHH
Confidence 888999999999999999999988999999999999998 999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHccC----chhHHHHHhCCcHHHHHHHHhcCCH
Q 041050 337 EAAPIRRHIELALCHLAQH----EVNAREMISGGALWELVRISRDCSR 380 (408)
Q Consensus 337 ~~~~v~~~a~~aL~~La~~----~~~~~~l~~~g~i~~L~~ll~~~~~ 380 (408)
-+..++++||||+.|.+.+ ++..+.+++.|.+++|..+|...++
T Consensus 381 ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dN 428 (526)
T COG5064 381 AEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDN 428 (526)
T ss_pred HHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCc
Confidence 9999999999999999876 5667888899999999999985443
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.94 E-value=1.7e-24 Score=243.21 Aligned_cols=264 Identities=18% Similarity=0.201 Sum_probs=221.1
Q ss_pred hhcC-CCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHH
Q 041050 124 DSGN-GQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRV 201 (408)
Q Consensus 124 ~~ls-~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~ 201 (408)
.++. +..+.++.++..|++|.|+++|++++..+|..|+++|+||+. +++++..|++.||||+|+.+|.+ .+..+++.
T Consensus 429 ~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s-~~~~iqee 507 (2102)
T PLN03200 429 SSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET-GSQKAKED 507 (2102)
T ss_pred HHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHH
Confidence 4443 557778889999999999999999999999999999999997 77899999999999999999984 68899999
Q ss_pred HHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchh-----------------------
Q 041050 202 AAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKL----------------------- 258 (408)
Q Consensus 202 A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~----------------------- 258 (408)
|+|+|+||+.+++.++..+.+.|++++|+.+|. +.++.++..++++|.||+.+.+.
T Consensus 508 AawAL~NLa~~~~qir~iV~~aGAIppLV~LL~-sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~ 586 (2102)
T PLN03200 508 SATVLWNLCCHSEDIRACVESAGAVPALLWLLK-NGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLD 586 (2102)
T ss_pred HHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHH
Confidence 999999999984556666668899999999994 56889999999999999622111
Q ss_pred ---------------HHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHh
Q 041050 259 ---------------QMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIE 323 (408)
Q Consensus 259 ---------------~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~ 323 (408)
+......||++.|+.+++++++.+++.|+|+|+|++. ++++.+..++.
T Consensus 587 vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a-----------------~~~d~~~avv~ 649 (2102)
T PLN03200 587 VLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFS-----------------SRQDLCESLAT 649 (2102)
T ss_pred HHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc-----------------CChHHHHHHHH
Confidence 1111246899999999999999999999999999997 88999999999
Q ss_pred cCcHHHHHHhccCCCHHHHHHHHHHHHHHccC--chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHH--HHHhccHhhHH
Q 041050 324 DGALPWIVQNANNEAAPIRRHIELALCHLAQH--EVNAREMISGGALWELVRISRDCSREDIRSLAH--RTLSSSLTFRA 399 (408)
Q Consensus 324 ~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~--~~L~~~~~~~~ 399 (408)
.|++|+++.++++++.++++.++|+|.+++.+ .++...+++.|++++|++++.+.+.+....++. ..+...+....
T Consensus 650 agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ 729 (2102)
T PLN03200 650 DEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAA 729 (2102)
T ss_pred cCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHH
Confidence 99999999999999999999999999999965 445567889999999999999765554333222 45556666677
Q ss_pred HHHhhhh
Q 041050 400 EMRRLRI 406 (408)
Q Consensus 400 ~~~~~~~ 406 (408)
++...|+
T Consensus 730 ei~~~~~ 736 (2102)
T PLN03200 730 EALAEDI 736 (2102)
T ss_pred HHHhcCc
Confidence 7766554
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.94 E-value=8.2e-26 Score=210.48 Aligned_cols=258 Identities=19% Similarity=0.284 Sum_probs=221.5
Q ss_pred chhhhhhcCC-CCchHHHHHHhcCHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCchhHH-HHHHhCCHHHHHHHHcCCCC
Q 041050 119 HSQFRDSGNG-QKAPITKLFEQVGLHKILSLLE-SEDANVRIHAVKVVANLAAEEANQE-KIVEAGGLSSLLMLLRSFED 195 (408)
Q Consensus 119 ~~~~l~~ls~-~~~~~~~l~~~~~v~~Ll~lL~-s~~~~v~~~A~~aL~nLa~~~~~~~-~i~~~g~i~~L~~lL~~~~~ 195 (408)
.-.|.+.+|. ..+++..++..|.||.+++++. +.+.-++..|+|+|.|++++...+. .+++.|++|.++++|.+ ..
T Consensus 92 v~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s-~~ 170 (526)
T COG5064 92 VYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSS-TE 170 (526)
T ss_pred HHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcC-ch
Confidence 4568888864 4899999999999999999995 6667788899999999999655554 45689999999999995 57
Q ss_pred HHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcC-CCHHHHHHHHHHHHHHh--CCchhHHHHHhcccHHHHH
Q 041050 196 ETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADA-EDPQTLRMVAGAIANLC--GNDKLQMKLRSEGGIRALL 272 (408)
Q Consensus 196 ~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~L~ 272 (408)
.+|+..++|||+|++.+++..|+.+.+.|++.+++.++.++ .+..+.+.+.|+|.||| .||...-.-+. ..++.|.
T Consensus 171 ~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~is-qalpiL~ 249 (526)
T COG5064 171 DDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNIS-QALPILA 249 (526)
T ss_pred HHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHH-HHHHHHH
Confidence 79999999999999999999999999999999999988533 34689999999999999 45533333332 4688899
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHH
Q 041050 273 GMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHL 352 (408)
Q Consensus 273 ~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~L 352 (408)
+++.+.|+++...|+||++.|+. |..+...++++.|..+.|+++|.+++..++..|...++|+
T Consensus 250 KLiys~D~evlvDA~WAiSYlsD-----------------g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNI 312 (526)
T COG5064 250 KLIYSRDPEVLVDACWAISYLSD-----------------GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNI 312 (526)
T ss_pred HHHhhcCHHHHHHHHHHHHHhcc-----------------CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCe
Confidence 99999999999999999999997 7788888999999999999999999999999999999999
Q ss_pred ccCchhH-HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhccHh
Q 041050 353 AQHEVNA-REMISGGALWELVRISRDCSREDIRSLAHRTLSSSLT 396 (408)
Q Consensus 353 a~~~~~~-~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~ 396 (408)
.++.+.. ..++..|+++.+..+|.+ ..+.+++.|.|++++-.+
T Consensus 313 VTG~D~QTqviI~~G~L~a~~~lLs~-~ke~irKEaCWTiSNITA 356 (526)
T COG5064 313 VTGSDDQTQVIINCGALKAFRSLLSS-PKENIRKEACWTISNITA 356 (526)
T ss_pred eecCccceehheecccHHHHHHHhcC-hhhhhhhhhheeeccccc
Confidence 9996655 456699999999999874 566899999999887544
No 8
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.93 E-value=2.7e-23 Score=233.63 Aligned_cols=252 Identities=18% Similarity=0.227 Sum_probs=215.8
Q ss_pred hhhhhhcCC-CCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHH-HHHhCCHHHHHHHHcCCCCHH
Q 041050 120 SQFRDSGNG-QKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEK-IVEAGGLSSLLMLLRSFEDET 197 (408)
Q Consensus 120 ~~~l~~ls~-~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~-i~~~g~i~~L~~lL~~~~~~~ 197 (408)
...+.+++. ..++...+++.|++|+|+++|.+++..++..|+|+|+||+.++.+... +.+.|++|+|+.+|++ .+..
T Consensus 467 ~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~s-gd~~ 545 (2102)
T PLN03200 467 VALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKN-GGPK 545 (2102)
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhC-CCHH
Confidence 445667754 455677899999999999999999999999999999999996655455 5478999999999995 5789
Q ss_pred HHHHHHHHHHHhccCChh----------------h---------------------HHHHHhcCcHHHHHHHhhcCCCHH
Q 041050 198 IRRVAAGAIANLAMNAEA----------------N---------------------QELIMAQGGISLLSTTAADAEDPQ 240 (408)
Q Consensus 198 v~~~A~~aL~nLa~~~~~----------------~---------------------~~~i~~~g~i~~Lv~lL~~~~~~~ 240 (408)
++..|+++|.||+.+.+. . +......||++.|+.++ +++++.
T Consensus 546 ~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL-~sgs~~ 624 (2102)
T PLN03200 546 GQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLL-SSSKEE 624 (2102)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHH-cCCCHH
Confidence 999999999999643110 0 11112468999999999 567889
Q ss_pred HHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHH
Q 041050 241 TLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRS 319 (408)
Q Consensus 241 v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~ 319 (408)
+++.|+++|+|++ +++.+...++..|++++++.+|++.+.+++++++|+|.|++.+ ++...+.
T Consensus 625 ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~----------------~~~~q~~ 688 (2102)
T PLN03200 625 TQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRS----------------IKENRKV 688 (2102)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhC----------------CCHHHHH
Confidence 9999999999999 7888888999999999999999999999999999999999962 5556667
Q ss_pred HHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHH
Q 041050 320 LLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHR 389 (408)
Q Consensus 320 ~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~ 389 (408)
.+++.|++|+|++++++++.+++..|+.+|.|++.+.+.+..+...|+++.|++++++.+++..+.+|..
T Consensus 689 ~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~A 758 (2102)
T PLN03200 689 SYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARA 758 (2102)
T ss_pred HHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999888777777663
No 9
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.2e-23 Score=194.73 Aligned_cols=312 Identities=19% Similarity=0.198 Sum_probs=257.2
Q ss_pred HHHhhhHHHHHHHHhhhhhhhHHHHHHHh----hhhcccccccccccc---------------cchhhhhhcCCCCchHH
Q 041050 74 LQKRKLEEEIVILRSQLLQLTFEADQMQK----CLERGEFGNTFTGLD---------------KHSQFRDSGNGQKAPIT 134 (408)
Q Consensus 74 ~~~~~~~~~~~~l~~~l~~~~~~~~~~r~----~~~~~~~~~~~~~~~---------------~~~~~l~~ls~~~~~~~ 134 (408)
..|++.|.+..-+.+.+.+.+.-+...-. .+++-++.-.+.|++ ..+.-..++..+.++.-
T Consensus 82 Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~ 161 (550)
T KOG4224|consen 82 VSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKV 161 (550)
T ss_pred hhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchh
Confidence 45678888888888888887543222111 111112222223333 11333466767788888
Q ss_pred HHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh
Q 041050 135 KLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE 214 (408)
Q Consensus 135 ~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~ 214 (408)
++...|++.++..+-++.+..+|.++..+|.|++...++|..++..||+|.|++++++ .|++++..++.+|.|++.+ .
T Consensus 162 kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s-~d~dvqyycttaisnIaVd-~ 239 (550)
T KOG4224|consen 162 KIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKS-GDLDVQYYCTTAISNIAVD-R 239 (550)
T ss_pred hhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhcc-CChhHHHHHHHHhhhhhhh-H
Confidence 9999999999999888999999999999999999999999999999999999999995 6889999999999999999 9
Q ss_pred hhHHHHHhcC--cHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 041050 215 ANQELIMAQG--GISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIAN 292 (408)
Q Consensus 215 ~~~~~i~~~g--~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~n 292 (408)
.+|+.+++.+ .+|.|+.++ ++.++.+...|.-+|.||+.+.+.+..+.+.|++|.++++++++.......-..|+.|
T Consensus 240 ~~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrn 318 (550)
T KOG4224|consen 240 RARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRN 318 (550)
T ss_pred HHHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhh
Confidence 9999999998 999999997 6678899999999999999999999999999999999999988876666667789999
Q ss_pred hhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCC-HHHHHHHHHHHHHHccC-chhHHHHHhCCcHHH
Q 041050 293 FAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEA-APIRRHIELALCHLAQH-EVNAREMISGGALWE 370 (408)
Q Consensus 293 L~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~-~~v~~~a~~aL~~La~~-~~~~~~l~~~g~i~~ 370 (408)
++. ++-+...+.+.|.+.+|+.+|.-++ .+++.+|+.+|+||+.. +.+...+.++|+++.
T Consensus 319 isi------------------hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~k 380 (550)
T KOG4224|consen 319 ISI------------------HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPK 380 (550)
T ss_pred ccc------------------ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHH
Confidence 985 4555556789999999999998765 55999999999999984 778888999999999
Q ss_pred HHHHHhcCCHHH--HHHHHHHHHhccHhhHHHHHhhhh
Q 041050 371 LVRISRDCSRED--IRSLAHRTLSSSLTFRAEMRRLRI 406 (408)
Q Consensus 371 L~~ll~~~~~~~--~~~~A~~~L~~~~~~~~~~~~~~~ 406 (408)
|+.++.+.+-+. -..+|...|..+..++..+-..||
T Consensus 381 l~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi 418 (550)
T KOG4224|consen 381 LIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGI 418 (550)
T ss_pred HHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCC
Confidence 999999776544 334555778888888888887776
No 10
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=6.2e-24 Score=199.48 Aligned_cols=254 Identities=19% Similarity=0.266 Sum_probs=226.3
Q ss_pred hhhhcCCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhC--CHHHHHHHHcCCCCHHHH
Q 041050 122 FRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAG--GLSSLLMLLRSFEDETIR 199 (408)
Q Consensus 122 ~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g--~i~~L~~lL~~~~~~~v~ 199 (408)
.+-++....++.+.++..||+|.|++++++.+.++|..++.++.|++.+..+|.++++.+ .+|.|+.++.+ .++.++
T Consensus 190 aLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~-~s~kvk 268 (550)
T KOG4224|consen 190 ALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDD-GSDKVK 268 (550)
T ss_pred HHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhC-CChHHH
Confidence 345556778999999999999999999999999999999999999999999999999998 79999999995 678899
Q ss_pred HHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCC
Q 041050 200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGH 279 (408)
Q Consensus 200 ~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~ 279 (408)
-.|.-+|.||+.+ ...+..|++.|++|.+++++.++.-| .....+.+|.|++-.|-|-..|.+.|.+++|+.+|+..|
T Consensus 269 cqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~p-lilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~d 346 (550)
T KOG4224|consen 269 CQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGP-LILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGD 346 (550)
T ss_pred HHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchh-HHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCC
Confidence 9999999999999 99999999999999999999554444 444677899999998999899999999999999998655
Q ss_pred H-HHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchh
Q 041050 280 P-DVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVN 358 (408)
Q Consensus 280 ~-~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~ 358 (408)
. +++-+|..+|+||+. .+...+..|++.|++|.++.++..+.-++|.+...++..|+-+++.
T Consensus 347 nEeiqchAvstLrnLAa-----------------sse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~ 409 (550)
T KOG4224|consen 347 NEEIQCHAVSTLRNLAA-----------------SSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND 409 (550)
T ss_pred chhhhhhHHHHHHHHhh-----------------hhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc
Confidence 4 599999999999996 5788899999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhccH
Q 041050 359 AREMISGGALWELVRISRDCSREDIRSLAHRTLSSSL 395 (408)
Q Consensus 359 ~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~ 395 (408)
+.++.+.|.++.|+.+..+.+.+..-++|..+.+.+.
T Consensus 410 k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 410 KEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred HHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 9999999999999999997777665566665544443
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.79 E-value=2.8e-17 Score=172.20 Aligned_cols=248 Identities=19% Similarity=0.218 Sum_probs=211.7
Q ss_pred hhhhhhcCCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHH
Q 041050 120 SQFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIR 199 (408)
Q Consensus 120 ~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~ 199 (408)
..++=+++.......++...|+|+.|+++|.+++.++...++..|.+|+...+|+..|.+.|.+++|+.++.+ ++.+++
T Consensus 270 ~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s-~~~~l~ 348 (708)
T PF05804_consen 270 FYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPS-ENEDLV 348 (708)
T ss_pred HHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcC-CCHHHH
Confidence 5567888888888899999999999999999999999999999999999999999999999999999999995 678899
Q ss_pred HHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh-cCC
Q 041050 200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV-RCG 278 (408)
Q Consensus 200 ~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL-~~~ 278 (408)
..++++|.|||.+ +.+|..+++.|.+|.|+.+|. ++..+..+..+|.|||.+++++..+...++++.|+.++ ..+
T Consensus 349 ~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~---d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~ 424 (708)
T PF05804_consen 349 NVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLK---DPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENS 424 (708)
T ss_pred HHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhC---CCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCC
Confidence 9999999999999 999999999999999999994 34566779999999999999999999999999999977 567
Q ss_pred CHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc-h
Q 041050 279 HPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE-V 357 (408)
Q Consensus 279 ~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~-~ 357 (408)
++.+..+++..+.||+. ++.+.+.+.+.|+++.|+...-.....+ ....+.|++.++ .
T Consensus 425 ~~~v~~eliaL~iNLa~------------------~~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~ 483 (708)
T PF05804_consen 425 EEEVQLELIALLINLAL------------------NKRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGP 483 (708)
T ss_pred CccccHHHHHHHHHHhc------------------CHHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCch
Confidence 77888888999999994 6666778888899999998775433222 335899999997 4
Q ss_pred hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhccH
Q 041050 358 NAREMISGGALWELVRISRDCSREDIRSLAHRTLSSSL 395 (408)
Q Consensus 358 ~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~ 395 (408)
....+. +.+..|+.++..++++++.-.+.-+|++..
T Consensus 484 ~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 484 LKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLT 519 (708)
T ss_pred HHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence 444333 478888999988888887777777776654
No 12
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=1.1e-16 Score=149.54 Aligned_cols=255 Identities=18% Similarity=0.245 Sum_probs=211.6
Q ss_pred CCCchHHHHHHhcCHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCch----------hHHHHHHhCCHHHHHHHHcCCCCH
Q 041050 128 GQKAPITKLFEQVGLHKILSLLE-SEDANVRIHAVKVVANLAAEEA----------NQEKIVEAGGLSSLLMLLRSFEDE 196 (408)
Q Consensus 128 ~~~~~~~~l~~~~~v~~Ll~lL~-s~~~~v~~~A~~aL~nLa~~~~----------~~~~i~~~g~i~~L~~lL~~~~~~ 196 (408)
+++-+.+.+++.+..+.+...|. .+...+-+..++++..|..+++ ....|+..|++..|+..+....+|
T Consensus 177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence 55666777888888888887776 4555678889999999988654 456788888999999999877889
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHH---HHHHHHHHHHHhCCchhHHHHHhcccHHHHHH
Q 041050 197 TIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQT---LRMVAGAIANLCGNDKLQMKLRSEGGIRALLG 273 (408)
Q Consensus 197 ~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v---~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~ 273 (408)
.+.-.+..+|..|+.. ++.+..|.+.||+..|+.++.++.+.+. .+.++..|..|++++.++..|++.||.+.++.
T Consensus 257 ~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~ 335 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIIT 335 (461)
T ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHH
Confidence 9999999999999999 9999999999999999999977666544 46788999999999999999999999999999
Q ss_pred hh--cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC--CHHHHHHHHHHH
Q 041050 274 MV--RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE--AAPIRRHIELAL 349 (408)
Q Consensus 274 lL--~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~a~~aL 349 (408)
++ .+++|.|..+++.+++-|+. ..|+.-..+++.|+-...++.++.. ...+++++||++
T Consensus 336 l~~~h~~~p~Vi~~~~a~i~~l~L-----------------R~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~I 398 (461)
T KOG4199|consen 336 LALRHSDDPLVIQEVMAIISILCL-----------------RSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMI 398 (461)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHh-----------------cCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 77 47889999999999999997 8899999999999999999988643 677999999999
Q ss_pred HHHccCchhHHHHHhCCcHHHHHHHHhcC--CHHHHHHHHHHHHhccHhhHHH
Q 041050 350 CHLAQHEVNAREMISGGALWELVRISRDC--SREDIRSLAHRTLSSSLTFRAE 400 (408)
Q Consensus 350 ~~La~~~~~~~~l~~~g~i~~L~~ll~~~--~~~~~~~~A~~~L~~~~~~~~~ 400 (408)
.|++........+.-..|++.|++..++. +.++..++|.+-|.++.+.+.|
T Consensus 399 RNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLGc~v~lre~ 451 (461)
T KOG4199|consen 399 RNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDLGCDVYLREE 451 (461)
T ss_pred HHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcCcchhhHHH
Confidence 99999865555555555677777766644 4455667777888887776654
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.74 E-value=4e-16 Score=160.44 Aligned_cols=286 Identities=23% Similarity=0.291 Sum_probs=212.9
Q ss_pred HhhhHHHHHHHHhhhhhhhHHHHHHHhhhhcccccccccccccchhhhhhc-CCCCchHHHHHHhcCHHHHHHhhcCCCH
Q 041050 76 KRKLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLDKHSQFRDSG-NGQKAPITKLFEQVGLHKILSLLESEDA 154 (408)
Q Consensus 76 ~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~l-s~~~~~~~~l~~~~~v~~Ll~lL~s~~~ 154 (408)
..++.|.+.+|.++++..+.-+. .+++.+ .+.+.-..++-+.|||++|+.+|.+.+.
T Consensus 232 d~~lpe~i~mL~~q~~~~qsnaa----------------------aylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~ 289 (717)
T KOG1048|consen 232 DPTLPEVISMLMSQDPSVQSNAA----------------------AYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRND 289 (717)
T ss_pred ccccHHHHHHHhccChhhhHHHH----------------------HHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcH
Confidence 34677777787777655442111 122333 2344445577778999999999999999
Q ss_pred HHHHHHHHHHHHHcC---CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC------------------
Q 041050 155 NVRIHAVKVVANLAA---EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNA------------------ 213 (408)
Q Consensus 155 ~v~~~A~~aL~nLa~---~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~------------------ 213 (408)
+++.+|+++|.||.+ +++|+..|.+.+||+.++.+|+...|.++++.+.++||||+.++
T Consensus 290 evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~v 369 (717)
T KOG1048|consen 290 EVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNV 369 (717)
T ss_pred HHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhh
Confidence 999999999999998 34689999999999999999997789999999999999999983
Q ss_pred ------------------------------------hhhHHHHHh-cCcHHHHH--------------------------
Q 041050 214 ------------------------------------EANQELIMA-QGGISLLS-------------------------- 230 (408)
Q Consensus 214 ------------------------------------~~~~~~i~~-~g~i~~Lv-------------------------- 230 (408)
.+.|+.+.+ .|.|..|+
T Consensus 370 I~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRN 449 (717)
T KOG1048|consen 370 IIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRN 449 (717)
T ss_pred cccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhh
Confidence 111222222 12222222
Q ss_pred ---------------------------------------------------------------------------HHhhc
Q 041050 231 ---------------------------------------------------------------------------TTAAD 235 (408)
Q Consensus 231 ---------------------------------------------------------------------------~lL~~ 235 (408)
.+|..
T Consensus 450 LSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~ 529 (717)
T KOG1048|consen 450 LSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLAL 529 (717)
T ss_pred cCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHH
Confidence 12223
Q ss_pred CCCHHHHHHHHHHHHHHh-CCc----hhHHHH-HhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhh
Q 041050 236 AEDPQTLRMVAGAIANLC-GND----KLQMKL-RSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRC 309 (408)
Q Consensus 236 ~~~~~v~~~a~~aL~nL~-~~~----~~~~~i-~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~ 309 (408)
+..+.+.+.++++|-||+ ++. ..+..+ ..+.+++.|+.+++.+|.+|.+.++.+|.||+.
T Consensus 530 s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~-------------- 595 (717)
T KOG1048|consen 530 SKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSR-------------- 595 (717)
T ss_pred hcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhcc--------------
Confidence 345567778889999997 433 334444 678999999999999999999999999999995
Q ss_pred hccCChhhHHHHHhcCcHHHHHHhccCC------CHHHHHHHHHHHHHHcc-CchhHHHHHhCCcHHHHHHHHhcCCHHH
Q 041050 310 TATGVKSGRSLLIEDGALPWIVQNANNE------AAPIRRHIELALCHLAQ-HEVNAREMISGGALWELVRISRDCSRED 382 (408)
Q Consensus 310 ~~~~~~~~~~~i~~~g~l~~Lv~lL~~~------~~~v~~~a~~aL~~La~-~~~~~~~l~~~g~i~~L~~ll~~~~~~~ 382 (408)
+...+..|. .++++.|+..|... +.++...+|.+|+++.. +..+++++.+.++++.|+.|..+.....
T Consensus 596 ----d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k 670 (717)
T KOG1048|consen 596 ----DIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPK 670 (717)
T ss_pred ----Cchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHH
Confidence 666666666 78999999999754 37889999999999985 5889999999999999999999754444
Q ss_pred HHHHHHHHHhccHhhHHHHHh
Q 041050 383 IRSLAHRTLSSSLTFRAEMRR 403 (408)
Q Consensus 383 ~~~~A~~~L~~~~~~~~~~~~ 403 (408)
..++|. .+-...|...|||.
T Consensus 671 ~~kaAs-~vL~~lW~y~eLh~ 690 (717)
T KOG1048|consen 671 EFKAAS-SVLDVLWQYKELHF 690 (717)
T ss_pred HHHHHH-HHHHHHHHHHHHhh
Confidence 444444 33356666666654
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=2.8e-15 Score=140.27 Aligned_cols=237 Identities=19% Similarity=0.236 Sum_probs=198.5
Q ss_pred hhcCCCCchHHHHHHhcCHHHHHHhhc--CCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHH
Q 041050 124 DSGNGQKAPITKLFEQVGLHKILSLLE--SEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRR 200 (408)
Q Consensus 124 ~~ls~~~~~~~~l~~~~~v~~Ll~lL~--s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~ 200 (408)
+.++.--....+++...|...++.+|. .++.++.......+..-+. ++.+|+-+++.+.++.+...|.......+.+
T Consensus 129 ~al~~lt~~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VR 208 (461)
T KOG4199|consen 129 EAINSLTHKQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVR 208 (461)
T ss_pred HHHHHhhcCCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHH
Confidence 444444455577888889999999886 6778898888888887766 8999999999999999998886543345777
Q ss_pred HHHHHHHHhccCChhh----------HHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHH
Q 041050 201 VAAGAIANLAMNAEAN----------QELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRA 270 (408)
Q Consensus 201 ~A~~aL~nLa~~~~~~----------~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~ 270 (408)
.+.|+++-|..+ +++ ...|...|++..|++.+.-.-+|+++..++.+|..|+-+++..+.|.+.||++.
T Consensus 209 el~~a~r~l~~d-DDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~t 287 (461)
T KOG4199|consen 209 ELYDAIRALLTD-DDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDT 287 (461)
T ss_pred HHHHHHHHhcCC-CceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 799999999888 544 467899999999999998778899999999999999999999999999999999
Q ss_pred HHHhhcC-CCHHHH---HHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhc--cCCCHHHHHH
Q 041050 271 LLGMVRC-GHPDVL---SQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNA--NNEAAPIRRH 344 (408)
Q Consensus 271 L~~lL~~-~~~~v~---~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL--~~~~~~v~~~ 344 (408)
|++++.+ ++...+ +.|+..|+.|+ |+++.+..|++.|+.+.++.++ ++++|.|...
T Consensus 288 l~~~i~d~n~~~~r~l~k~~lslLralA------------------G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~ 349 (461)
T KOG4199|consen 288 LLRCIDDSNEQGNRTLAKTCLSLLRALA------------------GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQE 349 (461)
T ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHh------------------CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHH
Confidence 9999965 444444 66777777777 8999999999999999999987 5678999999
Q ss_pred HHHHHHHHccC-chhHHHHHhCCcHHHHHHHHhcCC
Q 041050 345 IELALCHLAQH-EVNAREMISGGALWELVRISRDCS 379 (408)
Q Consensus 345 a~~aL~~La~~-~~~~~~l~~~g~i~~L~~ll~~~~ 379 (408)
++.+++.|+-. +++...+++.|+-...++-++...
T Consensus 350 ~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP 385 (461)
T KOG4199|consen 350 VMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHP 385 (461)
T ss_pred HHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCc
Confidence 99999999987 778888889999887777665443
No 15
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.69 E-value=3.5e-16 Score=166.88 Aligned_cols=261 Identities=18% Similarity=0.197 Sum_probs=211.7
Q ss_pred hhhcCCCCchHHHHHHhcCHHHHHHhhcC------------CCHHHHHHHHHHHHHHcC-CchhHHHHHHhCC-HHHHHH
Q 041050 123 RDSGNGQKAPITKLFEQVGLHKILSLLES------------EDANVRIHAVKVVANLAA-EEANQEKIVEAGG-LSSLLM 188 (408)
Q Consensus 123 l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s------------~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~-i~~L~~ 188 (408)
+=++|-.++....|.+-||++.+-+||.- .+..+|.+|.++|.||++ +..|+..++...| +..+|.
T Consensus 322 lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVA 401 (2195)
T KOG2122|consen 322 LMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVA 401 (2195)
T ss_pred HHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHH
Confidence 33444556777888899998888877641 235689999999999999 6678888887666 899999
Q ss_pred HHcCCCCHHHHHHHHHHHHHhccCChhhHHH-HHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHh-c
Q 041050 189 LLRSFEDETIRRVAAGAIANLAMNAEANQEL-IMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRS-E 265 (408)
Q Consensus 189 lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~-i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~-~ 265 (408)
.|.+ .+.++....+++|.||+..-+.|-+. +.+.|-+..|+....+...+..+..++.+||||+ .+.+|+..|+. .
T Consensus 402 QL~s-~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVD 480 (2195)
T KOG2122|consen 402 QLIS-APEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVD 480 (2195)
T ss_pred HHhc-ChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhccc
Confidence 9985 56688899999999999986666555 5578989999887666666678889999999998 88999999997 6
Q ss_pred ccHHHHHHhhcC----CCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHH
Q 041050 266 GGIRALLGMVRC----GHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPI 341 (408)
Q Consensus 266 g~l~~L~~lL~~----~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v 341 (408)
|++..|+.+|.- +.-.+.+.+.++|.|.+. -.+...++|+.+.+++++..|++.|++..-.|
T Consensus 481 GALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS--------------~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTi 546 (2195)
T KOG2122|consen 481 GALAFLVGTLSYEGQSNTLAIIESAGGILRNVSS--------------LIATCEDYRQILRRHNCLQTLLQHLKSHSLTI 546 (2195)
T ss_pred chHHHHHhhccccCCcchhhhhhcCccHHHHHHh--------------HhhccchHHHHHHHhhHHHHHHHHhhhcceEE
Confidence 889999999953 345678888999999875 12357889999999999999999999999999
Q ss_pred HHHHHHHHHHHccC-chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHH---HHHhccHhhH
Q 041050 342 RRHIELALCHLAQH-EVNAREMISGGALWELVRISRDCSREDIRSLAH---RTLSSSLTFR 398 (408)
Q Consensus 342 ~~~a~~aL~~La~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~---~~L~~~~~~~ 398 (408)
.-++|.+||||+.. ++..+.+.+.|+++.|.+|+.+.........|. ++|+.-|..+
T Consensus 547 VSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPAkq 607 (2195)
T KOG2122|consen 547 VSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPAKQ 607 (2195)
T ss_pred eecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCchhh
Confidence 99999999999876 666777779999999999999776655443322 7777776654
No 16
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.63 E-value=2.3e-14 Score=147.56 Aligned_cols=249 Identities=23% Similarity=0.301 Sum_probs=195.0
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChh--hH
Q 041050 141 GLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEA--NQ 217 (408)
Q Consensus 141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~--~~ 217 (408)
-+|..+.+|.+.++.++..|+..+..+++ +...+..+...|||+.|+.+|. ++...|++.|+++|.||...+.. |+
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~-~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLD-HRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhc-CCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 47899999999999999999999999999 7788899999999999999999 57899999999999999987544 89
Q ss_pred HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhc---C-------C----CHHHH
Q 041050 218 ELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVR---C-------G----HPDVL 283 (408)
Q Consensus 218 ~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~---~-------~----~~~v~ 283 (408)
-.|.+.+||+.++.+|+...|.+++..+.++||||+.++..+..|+.. ++..|...+- + + ++++.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceee
Confidence 999999999999999998889999999999999999998888888764 4444544331 1 1 24566
Q ss_pred HHHHHHHHHhhccchhhhhHHH----------------------------------------------------------
Q 041050 284 SQVARGIANFAKCESRAATQVR---------------------------------------------------------- 305 (408)
Q Consensus 284 ~~a~~aL~nL~~~~~~~~~~~~---------------------------------------------------------- 305 (408)
.+++++|+|++....+++.++.
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 6777777777653222221111
Q ss_pred ---------------------------------------------------------------------hh-----hhhc
Q 041050 306 ---------------------------------------------------------------------FI-----RCTA 311 (408)
Q Consensus 306 ---------------------------------------------------------------------~~-----i~~~ 311 (408)
|+ +|..
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 11 1222
Q ss_pred cCChhhHHHH-HhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCH-----HHHHH
Q 041050 312 TGVKSGRSLL-IEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSR-----EDIRS 385 (408)
Q Consensus 312 ~~~~~~~~~i-~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~-----~~~~~ 385 (408)
.-....+..+ ....++|.|+++++.+++.+...++.+|.||+.+..++..|. .++++-|++.+..... ++...
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~ 630 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVR 630 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHH
Confidence 2222223444 677899999999999999999999999999999998865555 8899999999987665 66554
Q ss_pred HHHHHHh
Q 041050 386 LAHRTLS 392 (408)
Q Consensus 386 ~A~~~L~ 392 (408)
.+..+|.
T Consensus 631 ~vc~tl~ 637 (717)
T KOG1048|consen 631 AVCHTLN 637 (717)
T ss_pred HHHHhHH
Confidence 5554443
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.63 E-value=2.2e-14 Score=134.22 Aligned_cols=182 Identities=24% Similarity=0.266 Sum_probs=159.4
Q ss_pred HHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCc
Q 041050 177 IVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGND 256 (408)
Q Consensus 177 i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~ 256 (408)
+.+.+.++.|+.+|+.+.||.+++.|..+++|.+.. +.+|+.|.+.||++.+..++ +.++|.++..|++++.|++.+.
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVND 85 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCCh
Confidence 355667999999999888999999999999999999 99999999999999999998 6689999999999999999999
Q ss_pred hhHHHHHhcccHHHHHHhhc--CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhc
Q 041050 257 KLQMKLRSEGGIRALLGMVR--CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNA 334 (408)
Q Consensus 257 ~~~~~i~~~g~l~~L~~lL~--~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL 334 (408)
+++..+.. .++.+++... .-+..++..+.++|.||+. +++++..+. +.+|.++.++
T Consensus 86 en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv------------------~~~~~~~l~--~~i~~ll~LL 143 (254)
T PF04826_consen 86 ENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTV------------------TNDYHHMLA--NYIPDLLSLL 143 (254)
T ss_pred hhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCC------------------CcchhhhHH--hhHHHHHHHH
Confidence 99998754 4666666553 3478899999999999985 455555665 4799999999
Q ss_pred cCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCHHH
Q 041050 335 NNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSRED 382 (408)
Q Consensus 335 ~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~~~ 382 (408)
.+++..++.++..+|.||+.++...++++..+++..++.|...+...+
T Consensus 144 ~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~ 191 (254)
T PF04826_consen 144 SSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKE 191 (254)
T ss_pred HcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccH
Confidence 999999999999999999999999999999999999999998775554
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.59 E-value=1e-13 Score=129.73 Aligned_cols=196 Identities=23% Similarity=0.265 Sum_probs=170.7
Q ss_pred HHHhcCHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh
Q 041050 136 LFEQVGLHKILSLLE-SEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE 214 (408)
Q Consensus 136 l~~~~~v~~Ll~lL~-s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~ 214 (408)
..+.+.+++|+.+|+ +.++.+++.+..+++|.+..+.++..|.+.||++.+..+|.+ +++.++..|+++|.|++.+ .
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~aL~Nls~~-~ 85 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLND-PNPSVREKALNALNNLSVN-D 85 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCC-CChHHHHHHHHHHHhcCCC-h
Confidence 356677999999999 678999999999999999999999999999999999999995 7899999999999999999 9
Q ss_pred hhHHHHHhcCcHHHHHHHh-hcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 041050 215 ANQELIMAQGGISLLSTTA-ADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANF 293 (408)
Q Consensus 215 ~~~~~i~~~g~i~~Lv~lL-~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL 293 (408)
+++..|-. .++.++... ..+-+..++..++++|.||+..+..+..+. +.++.++.+|.+++..++.++.++|.||
T Consensus 86 en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 86 ENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred hhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 99998754 466666543 334466899999999999997777777775 4788999999999999999999999999
Q ss_pred hccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC-CHHHHHHHHHHHHHHccC
Q 041050 294 AKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE-AAPIRRHIELALCHLAQH 355 (408)
Q Consensus 294 ~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~a~~aL~~La~~ 355 (408)
+. +++....++..++++.++.++... +.++...+...+.|+..+
T Consensus 162 S~------------------np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 162 SE------------------NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cc------------------CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 94 677777888889999999999775 788899999999999765
No 19
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.53 E-value=8.8e-14 Score=148.90 Aligned_cols=217 Identities=19% Similarity=0.257 Sum_probs=185.1
Q ss_pred hhhc-CCCCchHHHHHHhcC-HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHH-HhCCHHHHHHHHcCCCCHHH
Q 041050 123 RDSG-NGQKAPITKLFEQVG-LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIV-EAGGLSSLLMLLRSFEDETI 198 (408)
Q Consensus 123 l~~l-s~~~~~~~~l~~~~~-v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~-~~g~i~~L~~lL~~~~~~~v 198 (408)
|.+| .|...|++.++.+.| +..++.-|.+..+++...-+.+|.||++ -+.|-.+++ +.|-+..|...--....+..
T Consensus 375 LTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsT 454 (2195)
T KOG2122|consen 375 LTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKEST 454 (2195)
T ss_pred hhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccch
Confidence 4666 588889999999877 6888999999999999999999999999 555555555 56668888776432345567
Q ss_pred HHHHHHHHHHhccCChhhHHHHHh-cCcHHHHHHHhhc---CCCHHHHHHHHHHHHHHh----CCchhHHHHHhcccHHH
Q 041050 199 RRVAAGAIANLAMNAEANQELIMA-QGGISLLSTTAAD---AEDPQTLRMVAGAIANLC----GNDKLQMKLRSEGGIRA 270 (408)
Q Consensus 199 ~~~A~~aL~nLa~~~~~~~~~i~~-~g~i~~Lv~lL~~---~~~~~v~~~a~~aL~nL~----~~~~~~~~i~~~g~l~~ 270 (408)
.+..+.|||||+.++.+|+..|.. .|++..|+.+|.- +....+...+-++|.|.+ .++..|+.+++++++..
T Consensus 455 LKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~ 534 (2195)
T KOG2122|consen 455 LKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQT 534 (2195)
T ss_pred HHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHH
Confidence 888999999999999999999987 4677889999852 233457778888888875 77889999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHH
Q 041050 271 LLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALC 350 (408)
Q Consensus 271 L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~ 350 (408)
|++.|++..--+..++|++|+||+. .++.-++.+++.|+++.|..++++.+..+.+-++.+|.
T Consensus 535 LLQ~LKS~SLTiVSNaCGTLWNLSA-----------------R~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALr 597 (2195)
T KOG2122|consen 535 LLQHLKSHSLTIVSNACGTLWNLSA-----------------RSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALR 597 (2195)
T ss_pred HHHHhhhcceEEeecchhhhhhhhc-----------------CCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 9999999999999999999999997 88999999999999999999999999999999999999
Q ss_pred HHccCc
Q 041050 351 HLAQHE 356 (408)
Q Consensus 351 ~La~~~ 356 (408)
||....
T Consensus 598 NLln~R 603 (2195)
T KOG2122|consen 598 NLLNFR 603 (2195)
T ss_pred HHhcCC
Confidence 988775
No 20
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.47 E-value=1.5e-12 Score=107.34 Aligned_cols=117 Identities=36% Similarity=0.542 Sum_probs=108.0
Q ss_pred HHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCC-chhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC
Q 041050 135 KLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNA 213 (408)
Q Consensus 135 ~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~ 213 (408)
.+++.|+++.+++++.+++..++..++++|++++.. ++....+++.|+++.++.++.+ +++.++..|+++|+||+.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCc
Confidence 467889999999999999999999999999999994 8999999999999999999995 68999999999999999996
Q ss_pred hhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 041050 214 EANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC 253 (408)
Q Consensus 214 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~ 253 (408)
+..+..+...|+++.|+.++ ...+..+++.+++++.|||
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhh
Confidence 67888899999999999998 4568899999999999997
No 21
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.46 E-value=2e-12 Score=106.64 Aligned_cols=118 Identities=23% Similarity=0.402 Sum_probs=107.4
Q ss_pred HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 041050 219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG-NDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCE 297 (408)
Q Consensus 219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~-~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~ 297 (408)
.+++.|+++.|+.++. ..++.++..++++|+|++. ++.....+.+.|+++.++.++.++++.++..++++|+||+.
T Consensus 2 ~~~~~~~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~-- 78 (120)
T cd00020 2 AVIQAGGLPALVSLLS-SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAA-- 78 (120)
T ss_pred hHHHcCChHHHHHHHH-cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHcc--
Confidence 4678999999999995 5668999999999999994 48999999999999999999999999999999999999997
Q ss_pred hhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050 298 SRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ 354 (408)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~ 354 (408)
+.+.....+.+.|+++.|++++..++.+++..++++|++++.
T Consensus 79 ---------------~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 79 ---------------GPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred ---------------CcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 566677788899999999999999999999999999999874
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.32 E-value=2.9e-10 Score=117.40 Aligned_cols=214 Identities=13% Similarity=0.136 Sum_probs=184.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcC
Q 041050 145 ILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQG 224 (408)
Q Consensus 145 Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g 224 (408)
++..|++.+.+.-..++.+|..+......... ..+..+.|...|. ++++.|+..+++.|.++..+++.....+.+.+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~-h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLT-HPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 67888877777778888888887663333332 3445778888888 57899999999999999998666677788899
Q ss_pred cHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHH
Q 041050 225 GISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQV 304 (408)
Q Consensus 225 ~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~ 304 (408)
.++.++.++ ..++..+...|+.+|.+|+.++...+.+.+.+.+..|..++..++..++..+..++.+++.
T Consensus 120 l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~--------- 189 (503)
T PF10508_consen 120 LLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIAS--------- 189 (503)
T ss_pred HHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHh---------
Confidence 999999998 6688899999999999999888888888888889999999988788899999999999987
Q ss_pred HhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCC
Q 041050 305 RFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCS 379 (408)
Q Consensus 305 ~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~ 379 (408)
.+++....+.+.|+++.++..+.++|.-++.+++.+|..|+..+.+...+.+.|+++.|.+++....
T Consensus 190 --------~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~ 256 (503)
T PF10508_consen 190 --------HSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSE 256 (503)
T ss_pred --------cCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccc
Confidence 6777788888999999999999999999999999999999999999999999999999999987553
No 23
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.1e-09 Score=104.81 Aligned_cols=187 Identities=19% Similarity=0.170 Sum_probs=166.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHH
Q 041050 151 SEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLS 230 (408)
Q Consensus 151 s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv 230 (408)
+.+.+-++.|..-|.-++.+=+|...++..||+.+++..++ +.+..+|..|+++|+..+.++|..|..+++.|+.+.|+
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~-~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLE-NSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhc-CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 56778889999999999998899999999999999999888 47899999999999999999999999999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcC--CCHHHHHHHHHHHHHhhccchhhhhHHHhh
Q 041050 231 TTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRC--GHPDVLSQVARGIANFAKCESRAATQVRFI 307 (408)
Q Consensus 231 ~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~--~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~ 307 (408)
..+..+.+.+++..|+.+++++- .++..+..+...+|...|...+.+ .+...++.++..+.+|..
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~------------ 240 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ------------ 240 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH------------
Confidence 99987677788899999999998 888999999999999999999977 567788999999999997
Q ss_pred hhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 308 RCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 308 i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
.+......+...|....++.+..+.+.+++..+..++..+...
T Consensus 241 -----~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 241 -----EDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred -----hhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 5566666666777777788888888999999999999887765
No 24
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3e-10 Score=108.48 Aligned_cols=177 Identities=21% Similarity=0.207 Sum_probs=156.3
Q ss_pred chhhhhhcCCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHH
Q 041050 119 HSQFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDET 197 (408)
Q Consensus 119 ~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~ 197 (408)
.+.-++.+-.+-+|..+++.-||.+.++..+++.+..+|..|+++|+..+. +|..++.+++.||+++|+..+.++.+.+
T Consensus 103 ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~ 182 (342)
T KOG2160|consen 103 ALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNT 182 (342)
T ss_pred HHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCch
Confidence 355566666777888899999999999999999999999999999999988 8999999999999999999999877888
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcC-CCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhh
Q 041050 198 IRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADA-EDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMV 275 (408)
Q Consensus 198 v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL 275 (408)
++..|+.|+++|-.+++..+..+...+|...|...+.+. .++.+++.++..+.+|. .+......+...+....+..+.
T Consensus 183 ~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~ 262 (342)
T KOG2160|consen 183 VRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLI 262 (342)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHh
Confidence 999999999999999999999999999999999998543 67889999999999998 6666677777778888888888
Q ss_pred cCCCHHHHHHHHHHHHHhhc
Q 041050 276 RCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 276 ~~~~~~v~~~a~~aL~nL~~ 295 (408)
.+.+.++...+..++..+..
T Consensus 263 ~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 263 SSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hccchhhhHHHHHHHHHHHH
Confidence 88889999888887777664
No 25
>PRK09687 putative lyase; Provisional
Probab=99.25 E-value=4.2e-10 Score=107.44 Aligned_cols=186 Identities=15% Similarity=0.178 Sum_probs=91.6
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050 141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
.++.|+.+|.+++..+|..|+++|..+.. ...++.+..++. ++++.+|..|+++|+.|... +..
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~-~~d~~vR~~A~~aLg~lg~~-~~~---- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCS-SKNPIERDIGADILSQLGMA-KRC---- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHh-CCCHHHHHHHHHHHHhcCCC-ccc----
Confidence 35555566666666666666666555432 222444445444 34555666666666665443 111
Q ss_pred HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCch-hHHHH--------------------------HhcccHHHHHH
Q 041050 221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDK-LQMKL--------------------------RSEGGIRALLG 273 (408)
Q Consensus 221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~-~~~~i--------------------------~~~g~l~~L~~ 273 (408)
....++.|..++.+++++.|+..++.+|++++.... ....+ .+..+++.|+.
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~ 166 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLIN 166 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 112344454443345555566666666665542111 00000 01123344444
Q ss_pred hhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHc
Q 041050 274 MVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLA 353 (408)
Q Consensus 274 lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La 353 (408)
++.+++++|+..|+.+|+.+.. + ...+++.|+..+.+.+..||..|+++|+.+.
T Consensus 167 ~L~d~~~~VR~~A~~aLg~~~~-----------------~---------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 167 LLKDPNGDVRNWAAFALNSNKY-----------------D---------NPDIREAFVAMLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred HhcCCCHHHHHHHHHHHhcCCC-----------------C---------CHHHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence 4444444444444444444421 0 1135566666666667777777777766643
Q ss_pred cCchhHHHHHhCCcHHHHHHHHhcCC
Q 041050 354 QHEVNAREMISGGALWELVRISRDCS 379 (408)
Q Consensus 354 ~~~~~~~~l~~~g~i~~L~~ll~~~~ 379 (408)
.. .+++.|++.+.++.
T Consensus 221 ~~----------~av~~Li~~L~~~~ 236 (280)
T PRK09687 221 DK----------RVLSVLIKELKKGT 236 (280)
T ss_pred Ch----------hHHHHHHHHHcCCc
Confidence 21 35777777777543
No 26
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.24 E-value=3.8e-10 Score=109.22 Aligned_cols=224 Identities=16% Similarity=0.227 Sum_probs=165.8
Q ss_pred HHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCC------CCHHHHHHHHHHHHHh
Q 041050 137 FEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSF------EDETIRRVAAGAIANL 209 (408)
Q Consensus 137 ~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~------~~~~v~~~A~~aL~nL 209 (408)
+..+.++.|.+..+|++.++..+.+++|+|+++ +.++|..+.+.||-+.++.+|+.. .+.+....+.+.|.|.
T Consensus 84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny 163 (604)
T KOG4500|consen 84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNY 163 (604)
T ss_pred hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHh
Confidence 445667888888899999999999999999999 899999999999977777766531 1356778889999999
Q ss_pred ccCChhhHHHHHhcCcHHHHHHHhh---------------------------------------------cCCCHHHHHH
Q 041050 210 AMNAEANQELIMAQGGISLLSTTAA---------------------------------------------DAEDPQTLRM 244 (408)
Q Consensus 210 a~~~~~~~~~i~~~g~i~~Lv~lL~---------------------------------------------~~~~~~v~~~ 244 (408)
..+++..+...++.|+++.|..++- ....|++..+
T Consensus 164 ~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM 243 (604)
T KOG4500|consen 164 ILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEM 243 (604)
T ss_pred hCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhH
Confidence 9998999999999999986654321 1123445555
Q ss_pred HHHHHHHHhCCchhHHHHHhcccHHHHHHhhcC-CC----H---HHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChh
Q 041050 245 VAGAIANLCGNDKLQMKLRSEGGIRALLGMVRC-GH----P---DVLSQVARGIANFAKCESRAATQVRFIRCTATGVKS 316 (408)
Q Consensus 245 a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~-~~----~---~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~ 316 (408)
+...++..+.|+..+-.+.+.|.+..+..+++. ++ . ...+.++....-|. .|++.
T Consensus 244 ~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlll-----------------tGDeS 306 (604)
T KOG4500|consen 244 IFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLL-----------------TGDES 306 (604)
T ss_pred HHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhh-----------------cCchH
Confidence 566666666666666666666666666666643 11 1 11122222222222 26666
Q ss_pred hHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhc
Q 041050 317 GRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRD 377 (408)
Q Consensus 317 ~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~ 377 (408)
-+....+..++..++..+.+.+.+....+..+|+|++..+++...+++.|.+..|+.++.-
T Consensus 307 Mq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~ 367 (604)
T KOG4500|consen 307 MQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQ 367 (604)
T ss_pred HHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 5554444448999999999999999999999999999999999999999999999998864
No 27
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.23 E-value=1.6e-09 Score=112.01 Aligned_cols=197 Identities=15% Similarity=0.105 Sum_probs=163.8
Q ss_pred HhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchh-HHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh
Q 041050 138 EQVGLHKILSLLESEDANVRIHAVKVVANLAAEEAN-QEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN 216 (408)
Q Consensus 138 ~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~-~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~ 216 (408)
..+..+.+...|.++++.+|..+++.|.+++.+++. ...+.+.+.++.++.++. +++..+...|+.+|.+|+.+ +..
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~-~~d~~Va~~A~~~L~~l~~~-~~~ 152 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLR-DPDLSVAKAAIKALKKLASH-PEG 152 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHc-CCcHHHHHHHHHHHHHHhCC-chh
Confidence 344567888999999999999999999999885544 555666777999999998 57899999999999999998 778
Q ss_pred HHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 217 QELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 217 ~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
.+.++..++++.|..++.. .+..++..+..++.+++ .+++....+.+.|.++.++.-+.++|.-++.+|+..|..|+.
T Consensus 153 ~~~l~~~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 153 LEQLFDSNLLSKLKSLMSQ-SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred HHHHhCcchHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 8889899999999999844 46678889999999998 788888888999999999999999999999999999999994
Q ss_pred cchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC--CH---HHHHH-HHHHHHHHccC
Q 041050 296 CESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE--AA---PIRRH-IELALCHLAQH 355 (408)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~---~v~~~-a~~aL~~La~~ 355 (408)
++.+...+.+.|+++.|+.++.+. ++ .+... .....++++..
T Consensus 232 ------------------~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~ 279 (503)
T PF10508_consen 232 ------------------TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV 279 (503)
T ss_pred ------------------ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc
Confidence 677778889999999999998654 22 12222 33566777774
No 28
>PRK09687 putative lyase; Provisional
Probab=99.16 E-value=3.3e-09 Score=101.35 Aligned_cols=198 Identities=14% Similarity=0.085 Sum_probs=134.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh-------
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE------- 214 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~------- 214 (408)
++.+..++.++++.+|..|+++|+.|...+.. ....++.|..++..++++.||..|+.+|++++....
T Consensus 56 ~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~ 130 (280)
T PRK09687 56 FRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIV 130 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHH
Confidence 56666777788888888888888887553221 112356666664445677777777777777753210
Q ss_pred ------------hhHHHHH-------hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh
Q 041050 215 ------------ANQELIM-------AQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV 275 (408)
Q Consensus 215 ------------~~~~~i~-------~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL 275 (408)
..|...+ ...+++.|+.+| .++++.++..++.+|+++..+ ....++.|+.++
T Consensus 131 ~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L-~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L 201 (280)
T PRK09687 131 EQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLL-KDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAML 201 (280)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHh-cCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHh
Confidence 1111100 112456677776 456667777777777776321 124567799999
Q ss_pred cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 276 RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 276 ~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
.+++++|+..|+++|+.+.. ..++|.|++.+.+++ ++..++.+|+.+...
T Consensus 202 ~D~~~~VR~~A~~aLg~~~~----------------------------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 202 QDKNEEIRIEAIIGLALRKD----------------------------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK 251 (280)
T ss_pred cCCChHHHHHHHHHHHccCC----------------------------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH
Confidence 99999999999999999742 358999999999866 677899999888774
Q ss_pred chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041050 356 EVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSS 393 (408)
Q Consensus 356 ~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 393 (408)
.+++.|.+++....+..++..|.+.++.
T Consensus 252 ----------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 ----------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred ----------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 2589999999855555677777776653
No 29
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=2.6e-08 Score=97.85 Aligned_cols=285 Identities=14% Similarity=0.098 Sum_probs=208.0
Q ss_pred HhhhHHHHHHHHhhhhhhhHHHHHHHhhhhcccccccccccccchhhhhhcCCCCchHHHHHHhcCHHHHHHhhcCCCHH
Q 041050 76 KRKLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLDKHSQFRDSGNGQKAPITKLFEQVGLHKILSLLESEDAN 155 (408)
Q Consensus 76 ~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~~~~ 155 (408)
++++-+++..++.++.-+..-.++ +.+ ....|+-++...-..--++.....|.-|+..|.-.+.+
T Consensus 255 netLk~e~dr~~kklk~~~~KQeq----LLr-----------va~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~ 319 (791)
T KOG1222|consen 255 NETLKEEIDRLNKKLKTAIRKQEQ----LLR-----------VAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSS 319 (791)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH----HHH-----------HHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchH
Confidence 457888888888887655433333 222 14567777766555556788888899999999988999
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhc
Q 041050 156 VRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAAD 235 (408)
Q Consensus 156 v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~ 235 (408)
+.......|..|+.-.+|+..+.+.|.+.+|+.++. ..+++++...+..+.|++.+ ..++.+++..|-+|.|..++.+
T Consensus 320 Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp-~~h~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~ 397 (791)
T KOG1222|consen 320 LLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFP-IQHPDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDS 397 (791)
T ss_pred HHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcC-CCCHHHHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCC
Confidence 999999999999999999999999999999999998 47899999999999999999 9999999999999999999944
Q ss_pred CCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh-cCCCHHHHHHHHHHHHHhhccchhh--------hhHHHh
Q 041050 236 AEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV-RCGHPDVLSQVARGIANFAKCESRA--------ATQVRF 306 (408)
Q Consensus 236 ~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL-~~~~~~v~~~a~~aL~nL~~~~~~~--------~~~~~~ 306 (408)
.. -.-.|...+..++.++..+..+.-..+++.++..+ ...+..|-.......-||+.+..++ ..-+..
T Consensus 398 d~---~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ 474 (791)
T KOG1222|consen 398 DT---KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLME 474 (791)
T ss_pred cc---cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHH
Confidence 33 33357788999999999999999999999999866 4445555444444445666533322 111110
Q ss_pred -h-----------hhhccCChh-hHHHHHhcCcHHHHHHhccCC-CHHHHHHHHHHHHHHccC-chhHHHHHhCCcHHHH
Q 041050 307 -I-----------RCTATGVKS-GRSLLIEDGALPWIVQNANNE-AAPIRRHIELALCHLAQH-EVNAREMISGGALWEL 371 (408)
Q Consensus 307 -~-----------i~~~~~~~~-~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~a~~aL~~La~~-~~~~~~l~~~g~i~~L 371 (408)
+ +-+...++. .+..+++ .+..|...+++. +...-.++..++.||+-. -+....+-+...+|.+
T Consensus 475 ra~k~~D~lLmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~ 552 (791)
T KOG1222|consen 475 RAIKSRDLLLMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWM 552 (791)
T ss_pred HHhcccchHHHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHH
Confidence 0 111111221 3444454 566666666655 445677888999998875 4555556689999999
Q ss_pred HHHHhcCCHHH
Q 041050 372 VRISRDCSRED 382 (408)
Q Consensus 372 ~~ll~~~~~~~ 382 (408)
...+..+-+++
T Consensus 553 k~~L~pga~ed 563 (791)
T KOG1222|consen 553 KTQLQPGADED 563 (791)
T ss_pred HHhhcCCccch
Confidence 99888665443
No 30
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=99.10 E-value=4.3e-09 Score=102.87 Aligned_cols=251 Identities=17% Similarity=0.201 Sum_probs=182.0
Q ss_pred HHHhcCHHHHHHhhcCCCH--HHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC
Q 041050 136 LFEQVGLHKILSLLESEDA--NVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNA 213 (408)
Q Consensus 136 l~~~~~v~~Ll~lL~s~~~--~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~ 213 (408)
+-..||++.|+.++.+++. .+|..++++|-.+.. .+|++.++..| +..++.+-+..++++..+..+++|.|+..++
T Consensus 176 iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS 253 (832)
T KOG3678|consen 176 IRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHS 253 (832)
T ss_pred hhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhh
Confidence 4445789999999998775 459999999987654 56888888876 7778887776678899999999999999999
Q ss_pred hhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHH
Q 041050 214 EANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC--GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIA 291 (408)
Q Consensus 214 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~ 291 (408)
++....+++.||+..++--. +..+|.++++++-+|+|++ +.-..+..+++..+...|..+..+.|.-++.+||-+++
T Consensus 254 eet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~ 332 (832)
T KOG3678|consen 254 EETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVA 332 (832)
T ss_pred HHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHh
Confidence 99999999999999876554 5577999999999999998 77788999999999999999998888889999999999
Q ss_pred Hhhccchhh--hhHHHhh------------hhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc--C
Q 041050 292 NFAKCESRA--ATQVRFI------------RCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ--H 355 (408)
Q Consensus 292 nL~~~~~~~--~~~~~~~------------i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~--~ 355 (408)
.|+.+ .+. -..-+|+ =++|+.+..--..-.....+..|+.+|.+.--+.+--++.-++.=+. .
T Consensus 333 vlat~-KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs 411 (832)
T KOG3678|consen 333 VLATN-KEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKS 411 (832)
T ss_pred hhhhh-hhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHH
Confidence 99852 111 0111121 13344332221122223457788888886655555444444443332 1
Q ss_pred chhHHH-HHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 041050 356 EVNARE-MISGGALWELVRISRDCSREDIRSLAHRTL 391 (408)
Q Consensus 356 ~~~~~~-l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L 391 (408)
..+... +-+-|+|..|.++.. +.++...+.|.++|
T Consensus 412 ~Q~K~kVFseIGAIQaLKevaS-S~d~vaakfAseAL 447 (832)
T KOG3678|consen 412 LQGKTKVFSEIGAIQALKEVAS-SPDEVAAKFASEAL 447 (832)
T ss_pred hccchhHHHHHHHHHHHHHHhc-CchHHHHHHHHHHH
Confidence 233333 448999999999888 44555555555444
No 31
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.07 E-value=1.3e-08 Score=98.96 Aligned_cols=222 Identities=17% Similarity=0.166 Sum_probs=162.2
Q ss_pred HHHHHHhhc--CCCHHHHHHHHHHHHHHcC-CchhHHHHHHh------CCHHHHHHHHcCCCCHHHHHHHHHHHHHhccC
Q 041050 142 LHKILSLLE--SEDANVRIHAVKVVANLAA-EEANQEKIVEA------GGLSSLLMLLRSFEDETIRRVAAGAIANLAMN 212 (408)
Q Consensus 142 v~~Ll~lL~--s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~------g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~ 212 (408)
...++++|+ +.++++..+.+..+..+.. ++.....+.+. .-..+++.++.. +|..++..|+.+|..|...
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~-~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR-NDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S--SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC-CCHHHHHHHHHHHHHHHHc
Confidence 556667776 3789999999999998877 55555555441 247888998874 6899999999999999887
Q ss_pred ChhhHHHHHhcCcHHHHHHHhhcC---CCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh------c-CCCHHH
Q 041050 213 AEANQELIMAQGGISLLSTTAADA---EDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV------R-CGHPDV 282 (408)
Q Consensus 213 ~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL------~-~~~~~v 282 (408)
.+ .+..-...+.++.++..+.+. ++.++...++.+|.+|...+..|..+.+.|+++.++.++ . ..+..+
T Consensus 136 ~~-~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GP-KRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TT-T--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CC-ccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 33 333332255678888777542 334566899999999999999999999999999999999 2 345678
Q ss_pred HHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC-CHHHHHHHHHHHHHHccCch--hH
Q 041050 283 LSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE-AAPIRRHIELALCHLAQHEV--NA 359 (408)
Q Consensus 283 ~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~a~~aL~~La~~~~--~~ 359 (408)
+.+++.+++-|+ .+++....+.+.+++|.|+..++.. ..+|.+-+..++.||..... +.
T Consensus 215 ~Y~~ll~lWlLS------------------F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~ 276 (312)
T PF03224_consen 215 QYQALLCLWLLS------------------FEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNI 276 (312)
T ss_dssp HHHHHHHHHHHT------------------TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHH
T ss_pred HHHHHHHHHHHh------------------cCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHH
Confidence 999999999999 4788888899999999999999754 67899999999999999865 88
Q ss_pred HHHHhCCcHHHHHHHHhcC-CHHHH
Q 041050 360 REMISGGALWELVRISRDC-SREDI 383 (408)
Q Consensus 360 ~~l~~~g~i~~L~~ll~~~-~~~~~ 383 (408)
..|+..|+++.+..|.... +++++
T Consensus 277 ~~mv~~~~l~~l~~L~~rk~~Dedl 301 (312)
T PF03224_consen 277 ELMVLCGLLKTLQNLSERKWSDEDL 301 (312)
T ss_dssp HHHHHH-HHHHHHHHHSS--SSHHH
T ss_pred HHHHHccHHHHHHHHhcCCCCCHHH
Confidence 8999999998888877532 34443
No 32
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.01 E-value=2.4e-08 Score=99.66 Aligned_cols=209 Identities=15% Similarity=0.155 Sum_probs=153.5
Q ss_pred HHHHhhcC-CCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCC-CHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050 144 KILSLLES-EDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFE-DETIRRVAAGAIANLAMNAEANQELIM 221 (408)
Q Consensus 144 ~Ll~lL~s-~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~ 221 (408)
-+...+++ .+...+..++..|..|...+..|..+.+.+|++.|+.+|+... +.+++..++-++|-|+.+ +.......
T Consensus 147 ~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~ 225 (429)
T cd00256 147 WLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFN-PHAAEVLK 225 (429)
T ss_pred HHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhcc-HHHHHhhc
Confidence 34445554 3577888899999999999999999999999999999998644 678999999999999999 88888888
Q ss_pred hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCc-------hhHHHHHhcccHHHHHHhhc--CCCHHHHHHHH-----
Q 041050 222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLCGND-------KLQMKLRSEGGIRALLGMVR--CGHPDVLSQVA----- 287 (408)
Q Consensus 222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~-------~~~~~i~~~g~l~~L~~lL~--~~~~~v~~~a~----- 287 (408)
..+.|+.|+.++..+.-+.+.|.++.++.||...+ .....+++.|.++.+-.+.. -.|+++....-
T Consensus 226 ~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~ 305 (429)
T cd00256 226 RLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEE 305 (429)
T ss_pred cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence 89999999999988888899999999999998422 23445667677664444442 35677654221
Q ss_pred --------------------------------------------------HHHHHhhccchhhhhHHHhh---hhhcc-C
Q 041050 288 --------------------------------------------------RGIANFAKCESRAATQVRFI---RCTAT-G 313 (408)
Q Consensus 288 --------------------------------------------------~aL~nL~~~~~~~~~~~~~~---i~~~~-~ 313 (408)
..|..+-.. ++....+.=| ||.|. .
T Consensus 306 L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~-s~d~~~laVAc~Dige~vr~ 384 (429)
T cd00256 306 LKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLET-SVDPIILAVACHDIGEYVRH 384 (429)
T ss_pred HHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhc-CCCcceeehhhhhHHHHHHH
Confidence 111111100 0000000000 23332 4
Q ss_pred ChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050 314 VKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ 354 (408)
Q Consensus 314 ~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~ 354 (408)
+|.++..+.+.|+=..+++++.+++++|+.+|..|+..|..
T Consensus 385 ~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 385 YPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred CccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999987743
No 33
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4e-08 Score=102.03 Aligned_cols=232 Identities=13% Similarity=0.111 Sum_probs=187.2
Q ss_pred CCCchHHHHHHhcCHHHHHHhhc-CCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHH
Q 041050 128 GQKAPITKLFEQVGLHKILSLLE-SEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGA 205 (408)
Q Consensus 128 ~~~~~~~~l~~~~~v~~Ll~lL~-s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~a 205 (408)
++++...-+.-..-||.|+.+|+ ..+.+++..|+++|.+|+. -|.....+|+.++||.|+.-|-.-+..++.+.++.|
T Consensus 199 gnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqA 278 (1051)
T KOG0168|consen 199 GNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQA 278 (1051)
T ss_pred cchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHH
Confidence 33333333333334899999999 4679999999999999998 899999999999999999988756788999999999
Q ss_pred HHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCchhHHHHHhcccHHHHHHhhcCCCHHHH
Q 041050 206 IANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC--GNDKLQMKLRSEGGIRALLGMVRCGHPDVL 283 (408)
Q Consensus 206 L~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~ 283 (408)
|-.|+..+ -..|.++|++...+..| +--...+++.|+.+.+|+| ..++--..+++ .+|.|..+|...|....
T Consensus 279 LE~iSR~H---~~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~i 352 (1051)
T KOG0168|consen 279 LEKISRRH---PKAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPI 352 (1051)
T ss_pred HHHHHhhc---cHHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhH
Confidence 99999873 35788999999888776 3334679999999999999 33444445544 69999999999999999
Q ss_pred HHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC----CHHHHHHHHHHHHHHccC-chh
Q 041050 284 SQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE----AAPIRRHIELALCHLAQH-EVN 358 (408)
Q Consensus 284 ~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~----~~~v~~~a~~aL~~La~~-~~~ 358 (408)
+.++-++..++ |+|...++.-+.+...|.+....+++.-. +..+..-.+.++..|+.+ +-.
T Consensus 353 es~~ic~~ri~--------------d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~ 418 (1051)
T KOG0168|consen 353 ESVCICLTRIA--------------DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLL 418 (1051)
T ss_pred HHHHHHHHHHH--------------HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHH
Confidence 99998888886 46777888888889999999999988644 445666778899999999 666
Q ss_pred HHHHHhCCcHHHHHHHHhcCC
Q 041050 359 AREMISGGALWELVRISRDCS 379 (408)
Q Consensus 359 ~~~l~~~g~i~~L~~ll~~~~ 379 (408)
+..+.+.++...|..++...+
T Consensus 419 ~~tl~k~~I~~~L~~il~g~s 439 (1051)
T KOG0168|consen 419 FRTLLKLDIADTLKRILQGYS 439 (1051)
T ss_pred HHHHHHhhHHHHHHHHHhccC
Confidence 778889999999999987543
No 34
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.91 E-value=4.9e-08 Score=95.03 Aligned_cols=189 Identities=16% Similarity=0.189 Sum_probs=141.0
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCC---CCHHHHHHHHHHHHHhccCChhhH
Q 041050 141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSF---EDETIRRVAAGAIANLAMNAEANQ 217 (408)
Q Consensus 141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~---~~~~v~~~A~~aL~nLa~~~~~~~ 217 (408)
...+++.++.++|.-++..|+.+|..|......+..-...+.++.++..+.+. ++..++..|+.+|.+|... +..|
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R 184 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYR 184 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhH
Confidence 46888899999999999999999999987433333332245678888888742 2445678899999999999 9999
Q ss_pred HHHHhcCcHHHHHHHh------hcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhc-CCCHHHHHHHHHHH
Q 041050 218 ELIMAQGGISLLSTTA------ADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVR-CGHPDVLSQVARGI 290 (408)
Q Consensus 218 ~~i~~~g~i~~Lv~lL------~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~-~~~~~v~~~a~~aL 290 (408)
..+.+.||++.|+.++ .+.....++-.++-++|-|+.+++....+.+.+.++.|+.+++ +....|.+-+..++
T Consensus 185 ~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l 264 (312)
T PF03224_consen 185 QVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAIL 264 (312)
T ss_dssp HHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHH
Confidence 9999999999999999 4556678999999999999999999999999999999999995 66788999999999
Q ss_pred HHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC--CHHHHHHHH
Q 041050 291 ANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE--AAPIRRHIE 346 (408)
Q Consensus 291 ~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~a~ 346 (408)
.||... +.......|+..|+++.+-.+.... |+++.....
T Consensus 265 ~Nl~~~----------------~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~ 306 (312)
T PF03224_consen 265 RNLLSK----------------APKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLE 306 (312)
T ss_dssp HHTTSS----------------SSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHH
T ss_pred HHHHhc----------------cHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 999961 1222677788877777666666443 666665443
No 35
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.85 E-value=7.9e-08 Score=94.20 Aligned_cols=176 Identities=24% Similarity=0.355 Sum_probs=146.2
Q ss_pred HHHHHHhCCHHHHHHHHcCCCC-HHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 041050 174 QEKIVEAGGLSSLLMLLRSFED-ETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANL 252 (408)
Q Consensus 174 ~~~i~~~g~i~~L~~lL~~~~~-~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL 252 (408)
.+.|...||+..|+.++...+- ..++-.|...|-.+.. .+|++.++..| +..++.+....+.++..+.+++.|.|+
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 3566678999999999985432 3467778888887766 47889988887 677777766677789999999999999
Q ss_pred h-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHH
Q 041050 253 C-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIV 331 (408)
Q Consensus 253 ~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv 331 (408)
- ...+..+.++..|++..++-..+..+|++.++|+.+|+|++. .|-..++..|++..+-+||.
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L----------------~~~~a~qrrmveKr~~EWLF 313 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCAL----------------HGGQAVQRRMVEKRAAEWLF 313 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhh----------------hchhHHHHHHHHhhhhhhhh
Confidence 8 777888999999999999999998899999999999999875 36778899999999999999
Q ss_pred HhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcH
Q 041050 332 QNANNEAAPIRRHIELALCHLAQHEVNAREMISGGAL 368 (408)
Q Consensus 332 ~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i 368 (408)
.+..+.+.-+|.+||.+++.++++.+--..+-++|-+
T Consensus 314 ~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~Tl 350 (832)
T KOG3678|consen 314 PLAFSKDELLRLHACLAVAVLATNKEVEREVRKSGTL 350 (832)
T ss_pred hhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccch
Confidence 9999998889999999999999986654444444433
No 36
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.82 E-value=5.7e-08 Score=80.43 Aligned_cols=131 Identities=17% Similarity=0.215 Sum_probs=111.4
Q ss_pred HHHHHH-hhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050 142 LHKILS-LLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 142 v~~Ll~-lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
++.|+. +-...+.+.+++...-|+|.+.+|.|...+.+...+...+.-|. .++..+...+++.|+|+|.+ +.+.+.|
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~-e~ne~LvefgIgglCNlC~d-~~n~~~I 95 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLE-EQNELLVEFGIGGLCNLCLD-KTNAKFI 95 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhh-cccHHHHHHhHHHHHhhccC-hHHHHHH
Confidence 556663 33478899999999999999999999999999999999999998 57999999999999999999 9999999
Q ss_pred HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhh
Q 041050 221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMV 275 (408)
Q Consensus 221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL 275 (408)
++.+|+|.++..+ +++.+.+.-.++.++..|+ ++...+..+.....+..+...-
T Consensus 96 ~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~ 150 (173)
T KOG4646|consen 96 REALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWR 150 (173)
T ss_pred HHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHH
Confidence 9999999998887 4555667778999999999 7778888887765665554443
No 37
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.76 E-value=8.8e-08 Score=79.35 Aligned_cols=149 Identities=13% Similarity=0.148 Sum_probs=121.9
Q ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHH
Q 041050 182 GLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMK 261 (408)
Q Consensus 182 ~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~ 261 (408)
-++.|+.-.....+.+.+.....-|+|.+.+ |.|-..+.+.+++...+..| +.+++.+.....+.|+|+|.++.+...
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl-~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSL-EEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHh-hcccHHHHHHhHHHHHhhccChHHHHH
Confidence 3667777776667889999999999999999 99999999999999999998 567788999999999999999999999
Q ss_pred HHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHH
Q 041050 262 LRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPI 341 (408)
Q Consensus 262 i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v 341 (408)
|++.+|++.++..+.++...+...++.++..|+. |....+..+....++..+...-.+...+.
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~-----------------~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~ 157 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEF-----------------GERTERDELLSPAVVRTVQRWRESKSHDE 157 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcC-----------------cccchhHHhccHHHHHHHHHHHHHhhHHH
Confidence 9999999999999998888889999999999987 67777777776556655555443444444
Q ss_pred HHHHHHHH
Q 041050 342 RRHIELAL 349 (408)
Q Consensus 342 ~~~a~~aL 349 (408)
+.-|-.++
T Consensus 158 rnLa~~fl 165 (173)
T KOG4646|consen 158 RNLASAFL 165 (173)
T ss_pred HHHHHHHH
Confidence 44444333
No 38
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.74 E-value=4.1e-07 Score=88.50 Aligned_cols=208 Identities=16% Similarity=0.137 Sum_probs=152.7
Q ss_pred Hhhc-CCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHH-cCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcC
Q 041050 147 SLLE-SEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLL-RSFEDETIRRVAAGAIANLAMNAEANQELIMAQG 224 (408)
Q Consensus 147 ~lL~-s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL-~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g 224 (408)
..++ +.+.+-...+++.|-.+...++.|..++..+|+..++..+ ++..+.+++...+.++|-|+.+ |...+.+...+
T Consensus 163 ~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~~~~~~ 241 (442)
T KOG2759|consen 163 EQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEKLKRFD 241 (442)
T ss_pred HHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHHHhhcc
Confidence 4444 4777888889999999999999999999999999999999 5446789999999999999999 88888888889
Q ss_pred cHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCc------hhHHHHHhcccHHHHHHhhc--CCCHHHHHHHHHHHHHhh-
Q 041050 225 GISLLSTTAADAEDPQTLRMVAGAIANLC-GND------KLQMKLRSEGGIRALLGMVR--CGHPDVLSQVARGIANFA- 294 (408)
Q Consensus 225 ~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~------~~~~~i~~~g~l~~L~~lL~--~~~~~v~~~a~~aL~nL~- 294 (408)
-|+.|..++.++..+.|.|.+++++.|++ ..+ .....++..+.++.+-.+-. -+|+++....-..-.-|.
T Consensus 242 li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~ 321 (442)
T KOG2759|consen 242 LIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKN 321 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 99999999988888899999999999999 332 23344555666665444442 356665542221111111
Q ss_pred ------c-------------cchhh-----------------hhHHH-------h--------h-----hhhc-cCChhh
Q 041050 295 ------K-------------CESRA-----------------ATQVR-------F--------I-----RCTA-TGVKSG 317 (408)
Q Consensus 295 ------~-------------~~~~~-----------------~~~~~-------~--------~-----i~~~-~~~~~~ 317 (408)
. ++++. ..++. . + |+.+ =.+|.+
T Consensus 322 svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g 401 (442)
T KOG2759|consen 322 SVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG 401 (442)
T ss_pred HHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH
Confidence 0 01100 00000 0 0 1221 156899
Q ss_pred HHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 318 RSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 318 ~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
+..+.+.|+=..++.++++++++||.+|..|+..|..+
T Consensus 402 k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 402 KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999877543
No 39
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.74 E-value=2.1e-06 Score=94.94 Aligned_cols=216 Identities=21% Similarity=0.198 Sum_probs=117.5
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050 141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
.++.|+..|+++++.+|..|+.+|+.+.. .+.++.|+.+|+ ++++.||..|+.+|..+....+
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~-D~d~~VR~~Aa~aL~~l~~~~~------ 684 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALG-DGAAAVRRAAAEGLRELVEVLP------ 684 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhccC------
Confidence 47899999999999999999999988642 446888999997 5788999999999887743201
Q ss_pred HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC-C------------chhHH----HHHhcccHHHHHHhhcCCCHHHH
Q 041050 221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG-N------------DKLQM----KLRSEGGIRALLGMVRCGHPDVL 283 (408)
Q Consensus 221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~-~------------~~~~~----~i~~~g~l~~L~~lL~~~~~~v~ 283 (408)
..+.|...| .++++.++..++.+|..+.. + +..|. .+...+..+.|..++.++++.|+
T Consensus 685 ----~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR 759 (897)
T PRK13800 685 ----PAPALRDHL-GSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVR 759 (897)
T ss_pred ----chHHHHHHh-cCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHH
Confidence 123444444 33555566555555554321 0 00010 00011122334445555555555
Q ss_pred HHHHHHHHHhhccchhhhhHHHhhhhhcc--CChhhHHHHH----hcC----cHHHHHHhccCCCHHHHHHHHHHHHHHc
Q 041050 284 SQVARGIANFAKCESRAATQVRFIRCTAT--GVKSGRSLLI----EDG----ALPWIVQNANNEAAPIRRHIELALCHLA 353 (408)
Q Consensus 284 ~~a~~aL~nL~~~~~~~~~~~~~~i~~~~--~~~~~~~~i~----~~g----~l~~Lv~lL~~~~~~v~~~a~~aL~~La 353 (408)
..++.+|..+.......... +..+. .++..|...+ ..| +++.++..+.++++.||..|+.+|..+.
T Consensus 760 ~~aa~aL~~~~~~~~~~~~~----L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 760 IAVAKGLATLGAGGAPAGDA----VRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAA 835 (897)
T ss_pred HHHHHHHHHhccccchhHHH----HHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 55555555554211100000 00111 1112222111 111 2234555566566666666666665543
Q ss_pred cCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041050 354 QHEVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSS 393 (408)
Q Consensus 354 ~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 393 (408)
. ...++.|+.++.++ +.++|..|.+.|..
T Consensus 836 ~----------~~a~~~L~~~L~D~-~~~VR~~A~~aL~~ 864 (897)
T PRK13800 836 A----------DVAVPALVEALTDP-HLDVRKAAVLALTR 864 (897)
T ss_pred c----------cchHHHHHHHhcCC-CHHHHHHHHHHHhc
Confidence 2 22457888888754 45577777766644
No 40
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.71 E-value=6.6e-07 Score=87.18 Aligned_cols=236 Identities=14% Similarity=0.057 Sum_probs=174.9
Q ss_pred CCCchHHHHHHhcCHHHHHHhhc--CCCHHHHHHHHHHHHHHcC-C-chhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHH
Q 041050 128 GQKAPITKLFEQVGLHKILSLLE--SEDANVRIHAVKVVANLAA-E-EANQEKIVEAGGLSSLLMLLRSFEDETIRRVAA 203 (408)
Q Consensus 128 ~~~~~~~~l~~~~~v~~Ll~lL~--s~~~~v~~~A~~aL~nLa~-~-~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~ 203 (408)
+.++-..++++.|.++.|...+. ..+.+..+.-.....||.. . +-......+....-.+++++.+...++++....
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 44555567888888888887765 4566666666666666655 2 223444445555677888887666778899899
Q ss_pred HHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCC-------CHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhh
Q 041050 204 GAIANLAMNAEANQELIMAQGGISLLSTTAADAE-------DPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMV 275 (408)
Q Consensus 204 ~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~-------~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL 275 (408)
.+++-.+.+ +..+-.+++.|-+.-+++++..-. .......++....-|. +|+.-+...-....++.+.+.+
T Consensus 246 eila~~aen-d~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 246 EILAKAAEN-DLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHhcC-cceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHh
Confidence 999999998 999999999998888888875411 1223334445555454 5555444443333889999999
Q ss_pred cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC-----CCHHHHHHHHHHHH
Q 041050 276 RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN-----EAAPIRRHIELALC 350 (408)
Q Consensus 276 ~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-----~~~~v~~~a~~aL~ 350 (408)
+++|.+.+....-+++||++ +++..-.+++.|.+..|+.++.. ++-+++..++.||.
T Consensus 325 ~S~d~~l~t~g~LaigNfaR------------------~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALR 386 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFAR------------------RDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALR 386 (604)
T ss_pred cCCchhHHHHHHHHHHhhhc------------------cchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHH
Confidence 99999999999999999995 67777788999999999998843 35566777899999
Q ss_pred HHccCchhHHHHHhCCcHHHHHHHHhcCCHHH
Q 041050 351 HLAQHEVNAREMISGGALWELVRISRDCSRED 382 (408)
Q Consensus 351 ~La~~~~~~~~l~~~g~i~~L~~ll~~~~~~~ 382 (408)
|++-...++..++.+|.++.+...+...++..
T Consensus 387 nl~IPv~nka~~~~aGvteaIL~~lk~~~ppv 418 (604)
T KOG4500|consen 387 NLMIPVSNKAHFAPAGVTEAILLQLKLASPPV 418 (604)
T ss_pred hccccCCchhhccccchHHHHHHHHHhcCCcc
Confidence 99999999999999999999988887665543
No 41
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=9e-07 Score=92.26 Aligned_cols=217 Identities=14% Similarity=0.126 Sum_probs=170.2
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHH-HHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH
Q 041050 142 LHKILSLLES-EDANVRIHAVKVVA-NLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE 218 (408)
Q Consensus 142 v~~Ll~lL~s-~~~~v~~~A~~aL~-nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~ 218 (408)
+.+|++-|.. .++..+..|+.-|+ +|+. +++.-.-+.-.-.+|.|+.+|+...+.++...|+.||.+|+.-.|.-..
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 5677777764 47888877777776 5555 4443333333336899999999777899999999999999998899999
Q ss_pred HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccch
Q 041050 219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCES 298 (408)
Q Consensus 219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~ 298 (408)
.+++.+.||.|+.-|..-+..++-++++.+|-.|+... -..+.+.|++.+.+..+.-=...+++.|..+.+|+|..-
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi- 325 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI- 325 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 99999999999977766777889999999999998321 245678899999999998777789999999999998621
Q ss_pred hhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC----chhHHHHHhCCcHHHHHHH
Q 041050 299 RAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH----EVNAREMISGGALWELVRI 374 (408)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~----~~~~~~l~~~g~i~~L~~l 374 (408)
..++ -.-+. .++|.|..++...+....+.++.+++.++.. ++....++..|.+....+|
T Consensus 326 --------------~sd~-f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qL 388 (1051)
T KOG0168|consen 326 --------------RSDE-FHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQL 388 (1051)
T ss_pred --------------CCcc-chHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHH
Confidence 1111 12233 4899999999999999999999999998864 4556778899999999998
Q ss_pred HhcC
Q 041050 375 SRDC 378 (408)
Q Consensus 375 l~~~ 378 (408)
+...
T Consensus 389 lsvt 392 (1051)
T KOG0168|consen 389 LSVT 392 (1051)
T ss_pred HhcC
Confidence 8754
No 42
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.70 E-value=9.8e-07 Score=97.56 Aligned_cols=203 Identities=20% Similarity=0.161 Sum_probs=132.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM 221 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~ 221 (408)
.+.+...|.++++.+|..|+.+|..+... ....|+..|. ++++.+|..|+.+|..+..
T Consensus 686 ~~~L~~~L~~~d~~VR~~A~~aL~~~~~~-----------~~~~l~~~L~-D~d~~VR~~Av~aL~~~~~---------- 743 (897)
T PRK13800 686 APALRDHLGSPDPVVRAAALDVLRALRAG-----------DAALFAAALG-DPDHRVRIEAVRALVSVDD---------- 743 (897)
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhhccC-----------CHHHHHHHhc-CCCHHHHHHHHHHHhcccC----------
Confidence 36677889999999999999999886431 2345666777 4678888888888876521
Q ss_pred hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhh
Q 041050 222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAA 301 (408)
Q Consensus 222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~ 301 (408)
.+.|..++ .++++.|+..++.+|..+.... ...++.|..+++++++.|+..|+.+|+++.. .....
T Consensus 744 ----~~~l~~~l-~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~-~~~~~ 809 (897)
T PRK13800 744 ----VESVAGAA-TDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAAALAALAELGC-PPDDV 809 (897)
T ss_pred ----cHHHHHHh-cCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC-cchhH
Confidence 23355555 5567788888888887775321 1225667777777777777777777777752 21111
Q ss_pred hHHHhhhhhccCChhhHHHHH-------hcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHH
Q 041050 302 TQVRFIRCTATGVKSGRSLLI-------EDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRI 374 (408)
Q Consensus 302 ~~~~~~i~~~~~~~~~~~~i~-------~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~l 374 (408)
..+..++-. .+...|.... ....++.|+.++.+++..||..|+++|..+..++ . ..+.|...
T Consensus 810 ~~l~~aL~d--~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~-~--------a~~~L~~a 878 (897)
T PRK13800 810 AAATAALRA--SAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWPGDP-A--------ARDALTTA 878 (897)
T ss_pred HHHHHHhcC--CChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccCCCH-H--------HHHHHHHH
Confidence 111100000 1122222222 2356789999999999999999999999973222 2 36777777
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 041050 375 SRDCSREDIRSLAHRTLS 392 (408)
Q Consensus 375 l~~~~~~~~~~~A~~~L~ 392 (408)
+. .++.+++..|.+.|.
T Consensus 879 l~-D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 879 LT-DSDADVRAYARRALA 895 (897)
T ss_pred Hh-CCCHHHHHHHHHHHh
Confidence 77 446668888888775
No 43
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.69 E-value=5.1e-06 Score=84.89 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=118.7
Q ss_pred HhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCc
Q 041050 147 SLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGG 225 (408)
Q Consensus 147 ~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~ 225 (408)
......+.+.+..|+-.+.+++. -...+.-.-...++.+|++++. .++.-+...++++|+|+.++....+..+...||
T Consensus 384 ~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~-dp~~~i~~~~lgai~NlVmefs~~kskfl~~ng 462 (678)
T KOG1293|consen 384 CLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM-DPEIMIMGITLGAICNLVMEFSNLKSKFLRNNG 462 (678)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh-CcchhHHHHHHHHHHHHHhhcccHHHHHHHcCc
Confidence 33346778888888888888765 3334444445667899999996 466778888999999999998999999999999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhH-HHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhh
Q 041050 226 ISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQ-MKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAA 301 (408)
Q Consensus 226 i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~-~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~ 301 (408)
|..+..++ .+.++.++..+.|+|.++. .+++-. ......=+-..|+.+...+++.|+++|...++||+ |+++..
T Consensus 463 Id~l~s~~-~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~-c~~~~s 538 (678)
T KOG1293|consen 463 IDILESML-TDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT-CNSRKS 538 (678)
T ss_pred HHHHHHHh-cCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh-cCcHHH
Confidence 99999997 6788899999999999999 333333 23333334455666778999999999999999999 765554
No 44
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.65 E-value=6.5e-06 Score=82.47 Aligned_cols=243 Identities=14% Similarity=0.138 Sum_probs=171.9
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHHcC-CchhHHHHHHh-----CCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh
Q 041050 142 LHKILSLLE-SEDANVRIHAVKVVANLAA-EEANQEKIVEA-----GGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE 214 (408)
Q Consensus 142 v~~Ll~lL~-s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~-----g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~ 214 (408)
+..++.+++ ..++++....+..+.-|.. ++.....+.+. .-..+++.+|.. +|..+...|+.+|+.+...++
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~-~d~~i~~~a~~iLt~l~~~~~ 133 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNR-QDQFIVHMSFSILAKLACFGL 133 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcC-CchhHHHHHHHHHHHHHhcCc
Confidence 667778887 6778888888888887776 44444555554 346788888874 677889999999999876533
Q ss_pred hhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcC--CCHHHHHHHHHHHHH
Q 041050 215 ANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRC--GHPDVLSQVARGIAN 292 (408)
Q Consensus 215 ~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~--~~~~v~~~a~~aL~n 292 (408)
.+.......--++.|...+....+.+....++.++.+|...+..|..+.+.++++.|+.+|+. .+..++.+++.+++-
T Consensus 134 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWl 213 (429)
T cd00256 134 AKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWL 213 (429)
T ss_pred cccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 321111111122345566644445677778889999999999999999999999999999964 356899999999999
Q ss_pred hhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC-CHHHHHHHHHHHHHHccCc-------hhHHHHHh
Q 041050 293 FAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE-AAPIRRHIELALCHLAQHE-------VNAREMIS 364 (408)
Q Consensus 293 L~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~a~~aL~~La~~~-------~~~~~l~~ 364 (408)
|+. +++....+...+.++.|+++++.. -.++.+-++.++.|+...+ .....|++
T Consensus 214 LSF------------------~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~ 275 (429)
T cd00256 214 LTF------------------NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQ 275 (429)
T ss_pred Hhc------------------cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHH
Confidence 995 455666677789999999999765 5678888999999998742 34566778
Q ss_pred CCcHHHHHHHHhcC-CHHHHH----HHHH------HHHhccHhhHHHHHh
Q 041050 365 GGALWELVRISRDC-SREDIR----SLAH------RTLSSSLTFRAEMRR 403 (408)
Q Consensus 365 ~g~i~~L~~ll~~~-~~~~~~----~~A~------~~L~~~~~~~~~~~~ 403 (408)
.|..+.+..|.... +++|+. .+-. +.+++-....+|+..
T Consensus 276 ~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~s 325 (429)
T cd00256 276 CKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRS 325 (429)
T ss_pred cChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhc
Confidence 88888776666432 333322 1111 345555555666654
No 45
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=9e-06 Score=84.46 Aligned_cols=252 Identities=18% Similarity=0.178 Sum_probs=185.2
Q ss_pred cCHHHHHHhhcCCCHHHHHHHHHHHHHHcC--CchhHHHHHH-hCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh
Q 041050 140 VGLHKILSLLESEDANVRIHAVKVVANLAA--EEANQEKIVE-AGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN 216 (408)
Q Consensus 140 ~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~-~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~ 216 (408)
+-|..++..+...|-.||..|+..+.++-. .++.+..+.. .-||.+|+.+|.+ ..+.+|..++-.|..|..+++..
T Consensus 122 d~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D-srE~IRNe~iLlL~eL~k~n~~I 200 (970)
T KOG0946|consen 122 DNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD-SREPIRNEAILLLSELVKDNSSI 200 (970)
T ss_pred hhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh-hhhhhchhHHHHHHHHHccCchH
Confidence 458889999999999999999999998865 6677777766 4579999999984 46779999999999999998889
Q ss_pred HHHHHhcCcHHHHHHHhhcCC--CH-HHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhc---CCCHHH-----H-
Q 041050 217 QELIMAQGGISLLSTTAADAE--DP-QTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVR---CGHPDV-----L- 283 (408)
Q Consensus 217 ~~~i~~~g~i~~Lv~lL~~~~--~~-~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~---~~~~~v-----~- 283 (408)
|+.++-.+.+..|+.++.... |. -|..-++..|-||- .|..|+..+.+.+.++.|..+|. ..|.++ +
T Consensus 201 QKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qr 280 (970)
T KOG0946|consen 201 QKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQR 280 (970)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHH
Confidence 999999999999999986322 33 36777888888998 88899999999999999998884 233211 1
Q ss_pred ----HHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC--CHHHHHHHHHHHHHHccC-c
Q 041050 284 ----SQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE--AAPIRRHIELALCHLAQH-E 356 (408)
Q Consensus 284 ----~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~a~~aL~~La~~-~ 356 (408)
..++.+++.+..-+.... ....++.++...+++..|+..+-++ ..+|+..+..++.++..+ .
T Consensus 281 v~Nv~~~Lqivr~lVsP~Nt~~-----------~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~ 349 (970)
T KOG0946|consen 281 VQNVIEALQIVRSLVSPGNTSS-----------ITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNA 349 (970)
T ss_pred HHHHHHHHHHHHHhcCCCCcHH-----------HHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhch
Confidence 123355555543111100 1234557888899999999977554 788999999999999887 4
Q ss_pred hhHHHHHh----C------CcHHHHHHHHhcCCHHHHHHHHHHHHhccHhhHHHHHh
Q 041050 357 VNAREMIS----G------GALWELVRISRDCSREDIRSLAHRTLSSSLTFRAEMRR 403 (408)
Q Consensus 357 ~~~~~l~~----~------g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~~~~~~~ 403 (408)
.+...+.+ . ..+-.++.+..+.++-+.|-++..++.++..-..+.+|
T Consensus 350 ~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~ 406 (970)
T KOG0946|consen 350 RNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQR 406 (970)
T ss_pred HHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHH
Confidence 44444442 1 12334455556666777887777887777665555544
No 46
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=0.00019 Score=74.99 Aligned_cols=252 Identities=15% Similarity=0.131 Sum_probs=186.5
Q ss_pred HHHHHHhcCHHHHHHhhc--CCCHHHHHHHHHHHHHHcCCch-----------------hHHHHHH-hCCHHHHHHHHcC
Q 041050 133 ITKLFEQVGLHKILSLLE--SEDANVRIHAVKVVANLAAEEA-----------------NQEKIVE-AGGLSSLLMLLRS 192 (408)
Q Consensus 133 ~~~l~~~~~v~~Ll~lL~--s~~~~v~~~A~~aL~nLa~~~~-----------------~~~~i~~-~g~i~~L~~lL~~ 192 (408)
-+..+...|++++++.|. ..|+++...++..+.++...++ ..+.++. .+-|..|+..+.
T Consensus 54 YR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e- 132 (970)
T KOG0946|consen 54 YREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLE- 132 (970)
T ss_pred HHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHH-
Confidence 477888889999999998 5789999999999999987331 1233443 455889999998
Q ss_pred CCCHHHHHHHHHHHHHhccC-ChhhHHHHHh-cCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHH
Q 041050 193 FEDETIRRVAAGAIANLAMN-AEANQELIMA-QGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIR 269 (408)
Q Consensus 193 ~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~ 269 (408)
..|-.||..++..+.+|-.. .+..|+.+.. --||..||.+|. +..+.+|-.++-.|.-|. .|+..++.+.=.+++.
T Consensus 133 ~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~-DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFe 211 (970)
T KOG0946|consen 133 EFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR-DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFE 211 (970)
T ss_pred hhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh-hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 46889999999999887554 3566776654 568999999995 455688999999999999 7777777777788999
Q ss_pred HHHHhhcCC---C-HHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC---C----
Q 041050 270 ALLGMVRCG---H-PDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE---A---- 338 (408)
Q Consensus 270 ~L~~lL~~~---~-~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~---~---- 338 (408)
.|+.++... | .-|...|+..|-||-. .+..++..|.+.+.+|.|.++|.-. +
T Consensus 212 rLfsIIeeEGg~dGgIVveDCL~ll~NLLK-----------------~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~ 274 (970)
T KOG0946|consen 212 RLFSIIEEEGGLDGGIVVEDCLILLNNLLK-----------------NNISNQNFFREGSYIPRLLKLLSVFEFGDGEVF 274 (970)
T ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHHHHh-----------------hCcchhhHHhccccHHHHHhhcCcccccCcccc
Confidence 999999532 3 3578899999999998 8899999999999999999888642 2
Q ss_pred -HH---H--HHHHHHHHHHHccC-------chhHHHHHhCCcHHHHHHHHhcC-CHHHHHHHHH----HHHhccHhhHHH
Q 041050 339 -AP---I--RRHIELALCHLAQH-------EVNAREMISGGALWELVRISRDC-SREDIRSLAH----RTLSSSLTFRAE 400 (408)
Q Consensus 339 -~~---v--~~~a~~aL~~La~~-------~~~~~~l~~~g~i~~L~~ll~~~-~~~~~~~~A~----~~L~~~~~~~~~ 400 (408)
+. | ...+..++..+..- ..+.+.+.+.+++..|..++-++ -+.++...+. ...-.+-.-+.+
T Consensus 275 ~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~ 354 (970)
T KOG0946|consen 275 GWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDE 354 (970)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHH
Confidence 11 1 22355566666643 13445777999999999998876 3555554444 333344444444
Q ss_pred HHh
Q 041050 401 MRR 403 (408)
Q Consensus 401 ~~~ 403 (408)
+.+
T Consensus 355 F~~ 357 (970)
T KOG0946|consen 355 FAD 357 (970)
T ss_pred Hhh
Confidence 443
No 47
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.36 E-value=8.8e-06 Score=84.67 Aligned_cols=227 Identities=17% Similarity=0.158 Sum_probs=145.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM 221 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~ 221 (408)
+..+.+=|.++++.+|..|+++|++++. ++.... .++.+..++. ++++.||+.|+.++..+...+|+.-..
T Consensus 81 ~n~l~kdl~~~n~~~~~lAL~~l~~i~~-~~~~~~-----l~~~v~~ll~-~~~~~VRk~A~~~l~~i~~~~p~~~~~-- 151 (526)
T PF01602_consen 81 INSLQKDLNSPNPYIRGLALRTLSNIRT-PEMAEP-----LIPDVIKLLS-DPSPYVRKKAALALLKIYRKDPDLVED-- 151 (526)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHH-S-HHHHHH-----HHHHHHHHHH-SSSHHHHHHHHHHHHHHHHHCHCCHHG--
T ss_pred HHHHHHhhcCCCHHHHHHHHhhhhhhcc-cchhhH-----HHHHHHHHhc-CCchHHHHHHHHHHHHHhccCHHHHHH--
Confidence 5666666789999999999999999884 333322 4788888888 578899999999999998764554322
Q ss_pred hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHH-hCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhh
Q 041050 222 AQGGISLLSTTAADAEDPQTLRMVAGAIANL-CGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA 300 (408)
Q Consensus 222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL-~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~ 300 (408)
. .++.+..++ .+.++.+...|+.++..+ +.++... .+. ...++.|.+++...+|.++..+.+.+..++..+...
T Consensus 152 -~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i~~~~~~~~-~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~ 226 (526)
T PF01602_consen 152 -E-LIPKLKQLL-SDKDPSVVSAALSLLSEIKCNDDSYK-SLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPED 226 (526)
T ss_dssp -G-HHHHHHHHT-THSSHHHHHHHHHHHHHHHCTHHHHT-THH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHH
T ss_pred -H-HHHHHhhhc-cCCcchhHHHHHHHHHHHccCcchhh-hhH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhh
Confidence 1 378888888 667899999999999999 3222211 111 234455666667888888888888888887532222
Q ss_pred h--hHHHh-------------------hhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhH
Q 041050 301 A--TQVRF-------------------IRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNA 359 (408)
Q Consensus 301 ~--~~~~~-------------------~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~ 359 (408)
. ..+.. ++..+...+. .-..+++.|+.++.+.++.++..++..|..++...
T Consensus 227 ~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--- 298 (526)
T PF01602_consen 227 ADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--- 298 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---
T ss_pred hhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---
Confidence 2 11111 1222222222 22356777777777777778877887777777765
Q ss_pred HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041050 360 REMISGGALWELVRISRDCSREDIRSLAHRTLS 392 (408)
Q Consensus 360 ~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 392 (408)
...+. .....+..+...++..++..|..+|.
T Consensus 299 ~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~ 329 (526)
T PF01602_consen 299 PPAVF--NQSLILFFLLYDDDPSIRKKALDLLY 329 (526)
T ss_dssp HHHHG--THHHHHHHHHCSSSHHHHHHHHHHHH
T ss_pred chhhh--hhhhhhheecCCCChhHHHHHHHHHh
Confidence 22223 23333444444455567766665543
No 48
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.29 E-value=1.5e-05 Score=81.50 Aligned_cols=146 Identities=13% Similarity=0.084 Sum_probs=116.4
Q ss_pred CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHH
Q 041050 193 FEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRAL 271 (408)
Q Consensus 193 ~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L 271 (408)
..|.+++.+|+-.+.+++..-...+.-+-..++..+|+.++ ..++..+...+.++|+||. .-...+..++..||+..+
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll-~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l 466 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL-MDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL 466 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh-hCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH
Confidence 45778888888777777765344444456677889999998 5567788999999999999 667788899999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCc-HHHHHHhccCCCHHHHHHHHHHHH
Q 041050 272 LGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGA-LPWIVQNANNEAAPIRRHIELALC 350 (408)
Q Consensus 272 ~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~-l~~Lv~lL~~~~~~v~~~a~~aL~ 350 (408)
.+++.+.++.++..+.|+|.++.. +.++.........+ ...+..+..++++.|++.+...+.
T Consensus 467 ~s~~~~~~~n~r~~~~~~Lr~l~f-----------------~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllR 529 (678)
T KOG1293|consen 467 ESMLTDPDFNSRANSLWVLRHLMF-----------------NCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLR 529 (678)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHh-----------------cchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999999999999997 33333333333333 346677889999999999999999
Q ss_pred HHccCc
Q 041050 351 HLAQHE 356 (408)
Q Consensus 351 ~La~~~ 356 (408)
|+.++.
T Consensus 530 Nl~c~~ 535 (678)
T KOG1293|consen 530 NLTCNS 535 (678)
T ss_pred HhhcCc
Confidence 999984
No 49
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.24 E-value=2.1e-06 Score=57.10 Aligned_cols=40 Identities=23% Similarity=0.451 Sum_probs=38.2
Q ss_pred CchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050 255 NDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFA 294 (408)
Q Consensus 255 ~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~ 294 (408)
++++++.+++.|+++.|+.+|++++++++++|+|+|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999999999997
No 50
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.20 E-value=6.8e-05 Score=78.02 Aligned_cols=232 Identities=16% Similarity=0.178 Sum_probs=138.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
++.+..++.++++.+|..|+.++..+.. .|+.-.. . .++.+..+|. +.++.++..|+.++..+..+ +.....+
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~---~-~~~~l~~lL~-d~~~~V~~~a~~~l~~i~~~-~~~~~~~ 189 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVED---E-LIPKLKQLLS-DKDPSVVSAALSLLSEIKCN-DDSYKSL 189 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHG---G-HHHHHHHHTT-HSSHHHHHHHHHHHHHHHCT-HHHHTTH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHH---H-HHHHHhhhcc-CCcchhHHHHHHHHHHHccC-cchhhhh
Confidence 6777789999999999999999999976 5543221 1 3788999997 57899999999999999222 2221111
Q ss_pred HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchh
Q 041050 221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG-NDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESR 299 (408)
Q Consensus 221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~-~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~ 299 (408)
. ...++.|..++ ...+|-++..++.++..++. ++..... ...++.+..++.+.++.|..+|+.++..+.. ...
T Consensus 190 ~-~~~~~~L~~~l-~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~-~~~ 263 (526)
T PF01602_consen 190 I-PKLIRILCQLL-SDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSP-SPE 263 (526)
T ss_dssp H-HHHHHHHHHHH-TCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-SHH
T ss_pred H-HHHHHHhhhcc-cccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhc-chH
Confidence 0 11233344443 56778888888888888873 3333311 3445566666666677777777777777653 222
Q ss_pred hhhHHHhhhhhccCChhh--HHHHHh-------cC-----cHHHHHHhcc-CCCHHHHHHHHHHHHHHccCchhHHHHHh
Q 041050 300 AATQVRFIRCTATGVKSG--RSLLIE-------DG-----ALPWIVQNAN-NEAAPIRRHIELALCHLAQHEVNAREMIS 364 (408)
Q Consensus 300 ~~~~~~~~i~~~~~~~~~--~~~i~~-------~g-----~l~~Lv~lL~-~~~~~v~~~a~~aL~~La~~~~~~~~l~~ 364 (408)
.....+..++.|..+++. +-...+ .. .....+..+. +++..++..+..+|.+++...+. ..
T Consensus 264 ~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~-~~--- 339 (526)
T PF01602_consen 264 LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLANESNV-KE--- 339 (526)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHH-HH---
T ss_pred HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcccccch-hh---
Confidence 222222223332222221 111111 01 1122233444 77899999999999999875443 33
Q ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 041050 365 GGALWELVRISRDCSREDIRSLAHRTL 391 (408)
Q Consensus 365 ~g~i~~L~~ll~~~~~~~~~~~A~~~L 391 (408)
+++.|...+...++.+++..+.+.+
T Consensus 340 --Il~eL~~~l~~~~d~~~~~~~i~~I 364 (526)
T PF01602_consen 340 --ILDELLKYLSELSDPDFRRELIKAI 364 (526)
T ss_dssp --HHHHHHHHHHHC--HHHHHHHHHHH
T ss_pred --HHHHHHHHHHhccchhhhhhHHHHH
Confidence 5788888886555555665555443
No 51
>PF05536 Neurochondrin: Neurochondrin
Probab=98.19 E-value=0.00021 Score=74.50 Aligned_cols=200 Identities=18% Similarity=0.180 Sum_probs=144.6
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHcC-Cc---hhHHHHHHhCCHHHHHHHHcCC------CCHHHHHHHHHHHHHhc
Q 041050 141 GLHKILSLLESEDANVRIHAVKVVANLAA-EE---ANQEKIVEAGGLSSLLMLLRSF------EDETIRRVAAGAIANLA 210 (408)
Q Consensus 141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~---~~~~~i~~~g~i~~L~~lL~~~------~~~~v~~~A~~aL~nLa 210 (408)
.+++++.+|++.+.+-|-.++-.+.++.. ++ ..+..+.+.-|.+-|-.+|.+. +....+..|+.+|+.+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 47889999999888888888888899987 33 2345688988988888888752 34567888999999999
Q ss_pred cCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHH
Q 041050 211 MNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGI 290 (408)
Q Consensus 211 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL 290 (408)
.+ |+....--=.+-||.|++.+..+++..+...+..+|..++..++.++.+++.|+++.|.+.+.+ .+.....+..++
T Consensus 86 ~~-~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 86 RD-PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred CC-hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 98 7765332223469999999977777689999999999999999999999999999999999976 566778888888
Q ss_pred HHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc
Q 041050 291 ANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE 356 (408)
Q Consensus 291 ~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 356 (408)
.+++....... -.+....+. .+++.+...........+-..+..|..+-...
T Consensus 164 ~~Lls~~~~~~------------~~~~~~~l~--~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 164 LNLLSRLGQKS------------WAEDSQLLH--SILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHhcchhh------------hhhhHHHHH--HHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 88875111000 001111111 24455555555555556666677776665543
No 52
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.00011 Score=69.22 Aligned_cols=205 Identities=21% Similarity=0.246 Sum_probs=136.2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHH-hCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050 143 HKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVE-AGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM 221 (408)
Q Consensus 143 ~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~ 221 (408)
-.++.++.+.++.+|..|+..|.++++. ..+.-... .-.++.+.+++... ++ ...|+.+|.|++.+ +..++.++
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~-~~--~~~a~~alVnlsq~-~~l~~~ll 80 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDL-DP--AEPAATALVNLSQK-EELRKKLL 80 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCc-cc--ccHHHHHHHHHHhh-HHHHHHHH
Confidence 4577899999999999999999999886 22222211 22378888998843 33 56688999999999 99999988
Q ss_pred hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHh-------cccHHHHHHhhcCC-CH-HHHHHHHHHHHH
Q 041050 222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRS-------EGGIRALLGMVRCG-HP-DVLSQVARGIAN 292 (408)
Q Consensus 222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~-------~g~l~~L~~lL~~~-~~-~v~~~a~~aL~n 292 (408)
+. -+..++..+.+.. -.+-..++.+|+|++.++.....+.. .|...........+ +. .-..+.+..++|
T Consensus 81 ~~-~~k~l~~~~~~p~-~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQ-SPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HH-HHHHHHHHhcCcc-cchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 87 6667777774433 35777899999999977655544432 23333333333322 21 223456677778
Q ss_pred hhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHH--HHHHhccCCCHHHHH-HHHHHHHHHccCchhHHHHHhCCcHH
Q 041050 293 FAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALP--WIVQNANNEAAPIRR-HIELALCHLAQHEVNAREMISGGALW 369 (408)
Q Consensus 293 L~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~--~Lv~lL~~~~~~v~~-~a~~aL~~La~~~~~~~~l~~~g~i~ 369 (408)
|+ ....+|..+.+...+| .+..+-. .+..+|+ ..+.+|.|+|.+..+...+.. -.+.
T Consensus 159 ls------------------~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~ 218 (353)
T KOG2973|consen 159 LS------------------QFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESIN 218 (353)
T ss_pred Hh------------------hhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhc-chHH
Confidence 77 4677777777655443 3444444 5556655 488999999999888877775 3344
Q ss_pred HHHHH
Q 041050 370 ELVRI 374 (408)
Q Consensus 370 ~L~~l 374 (408)
.|..+
T Consensus 219 lLp~i 223 (353)
T KOG2973|consen 219 LLPAI 223 (353)
T ss_pred HHHHH
Confidence 44433
No 53
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.15 E-value=4.5e-06 Score=55.44 Aligned_cols=41 Identities=22% Similarity=0.355 Sum_probs=37.9
Q ss_pred ChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050 314 VKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ 354 (408)
Q Consensus 314 ~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~ 354 (408)
+++.+..+++.|++|.|++++++++++++++|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 36778899999999999999999999999999999999973
No 54
>PTZ00429 beta-adaptin; Provisional
Probab=98.13 E-value=0.0015 Score=70.27 Aligned_cols=179 Identities=14% Similarity=0.078 Sum_probs=128.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM 221 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~ 221 (408)
+..+.+=+.++++-+|..|++.|+++-. ..+++. .++.+...+. +.++-||+.|+.++..+-..++ +.+.
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~Ir~-----~~i~e~-l~~~lkk~L~-D~~pYVRKtAalai~Kly~~~p---elv~ 176 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCIRV-----SSVLEY-TLEPLRRAVA-DPDPYVRKTAAMGLGKLFHDDM---QLFY 176 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCc-----HHHHHH-HHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCc---cccc
Confidence 5666667778999999999999998755 223332 4667778887 5789999999999999976534 3445
Q ss_pred hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhh
Q 041050 222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA 300 (408)
Q Consensus 222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~ 300 (408)
+.|-++.|..+| .+.++.|..+|+.+|..++ .++.. .-...+.+..|+..+..-++..+-....+|.....
T Consensus 177 ~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P----- 248 (746)
T PTZ00429 177 QQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVYHLPECNEWGQLYILELLAAQRP----- 248 (746)
T ss_pred ccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-----
Confidence 566778888987 6788999999999999998 33322 11234455667777766667777777777755431
Q ss_pred hhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 301 ATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 301 ~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
.+. ... ..++..+.+.+++.++.|...|+.++.+++..
T Consensus 249 ------------~~~---~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 249 ------------SDK---ESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred ------------CCc---HHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 111 111 24677888889889999999999999999865
No 55
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.0006 Score=64.36 Aligned_cols=241 Identities=17% Similarity=0.150 Sum_probs=161.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM 221 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~ 221 (408)
++.+.++++...+ -+.|+.+|.|++.++..+.++... .+..++..+.+ +.-......+.+|.||+.+ +.....+.
T Consensus 46 lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~-~~k~l~~~~~~-p~~~lad~~cmlL~NLs~~-~~~~~~ll 120 (353)
T KOG2973|consen 46 LKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD-LLKVLMDMLTD-PQSPLADLICMLLSNLSRD-DDEVAALL 120 (353)
T ss_pred HHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHhcC-cccchHHHHHHHHHHhccC-chHHHHHH
Confidence 6778888886555 678999999999999999999888 66666777663 3235666788899999999 55554433
Q ss_pred hc------CcHHHHHHHhhcCCCH--HHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh--cCCCHHHHH-HHHHHH
Q 041050 222 AQ------GGISLLSTTAADAEDP--QTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV--RCGHPDVLS-QVARGI 290 (408)
Q Consensus 222 ~~------g~i~~Lv~lL~~~~~~--~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL--~~~~~~v~~-~a~~aL 290 (408)
.. .|+..++......... .-....+.+++||+..+..|..+.+...++ .-.++ .+.+..+++ -++++|
T Consensus 121 ~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p-~~kll~ft~~~s~vRr~Gvagtl 199 (353)
T KOG2973|consen 121 TNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFP-DQKLLPFTSEDSQVRRGGVAGTL 199 (353)
T ss_pred HhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcchhhhh-HhhhhcccccchhhhccchHHHH
Confidence 21 4555555544322211 223467889999999999999998766433 22222 345667765 477999
Q ss_pred HHhhccchhhhhHHHhh--------hhhccCChhhHHHHHhcCcHHHHHHhccC-----CCHHHHHHHHHHHHHHccCch
Q 041050 291 ANFAKCESRAATQVRFI--------RCTATGVKSGRSLLIEDGALPWIVQNANN-----EAAPIRRHIELALCHLAQHEV 357 (408)
Q Consensus 291 ~nL~~~~~~~~~~~~~~--------i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-----~~~~v~~~a~~aL~~La~~~~ 357 (408)
.|.|. +...-.++.+. +.=+||..+.-..=+ .+.-+.| +++.. +++.+|..-+-+|.-||....
T Consensus 200 kN~cF-d~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm-~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT~~ 276 (353)
T KOG2973|consen 200 KNCCF-DAKLHEVLLDESINLLPAILLPLAGPEELSEEDM-AKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCATRA 276 (353)
T ss_pred Hhhhc-cchhHHHHhcchHHHHHHHHhhcCCccccCHHHH-hcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhhhH
Confidence 99884 33332222221 111233332211111 1333344 66642 489999999999999999999
Q ss_pred hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 041050 358 NAREMISGGALWELVRISRDCSREDIRSLAHRTL 391 (408)
Q Consensus 358 ~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L 391 (408)
.+..+-+-|+.+.|..+=....+++++.++.+..
T Consensus 277 GRe~lR~kgvYpilRElhk~e~ded~~~ace~vv 310 (353)
T KOG2973|consen 277 GREVLRSKGVYPILRELHKWEEDEDIREACEQVV 310 (353)
T ss_pred hHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHH
Confidence 9888989999888888888778888888877543
No 56
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.11 E-value=4.5e-05 Score=74.58 Aligned_cols=167 Identities=11% Similarity=0.141 Sum_probs=134.3
Q ss_pred CCCchHHHHHHhcCHHHHHHhh-c-CCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHH
Q 041050 128 GQKAPITKLFEQVGLHKILSLL-E-SEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGA 205 (408)
Q Consensus 128 ~~~~~~~~l~~~~~v~~Ll~lL-~-s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~a 205 (408)
-..+-.-.++...|+..++..+ + ..+-.+|.+.+.+++-|++++...+.+...+-|+.|..+++.+..+.|.+.++.+
T Consensus 186 ~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai 265 (442)
T KOG2759|consen 186 RVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAI 265 (442)
T ss_pred cCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566788899999888 4 5678999999999999999999998886677799999999976678899999999
Q ss_pred HHHhccCCh------hhHHHHHhcC-------------------------------------------------------
Q 041050 206 IANLAMNAE------ANQELIMAQG------------------------------------------------------- 224 (408)
Q Consensus 206 L~nLa~~~~------~~~~~i~~~g------------------------------------------------------- 224 (408)
+.|+....+ .....++..+
T Consensus 266 ~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP 345 (442)
T KOG2759|consen 266 FRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSP 345 (442)
T ss_pred HHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCc
Confidence 999987742 2222333333
Q ss_pred ---------------------cHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHH
Q 041050 225 ---------------------GISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDV 282 (408)
Q Consensus 225 ---------------------~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v 282 (408)
.+..|+.+|..+.||.+...||.=|+... ..|+.+..+.+.||=..+++++.++||+|
T Consensus 346 ~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~V 425 (442)
T KOG2759|consen 346 VHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEV 425 (442)
T ss_pred cccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchH
Confidence 33455666666678888888888888888 88999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 041050 283 LSQVARGIANFA 294 (408)
Q Consensus 283 ~~~a~~aL~nL~ 294 (408)
+.+|..|+.-|.
T Consensus 426 ry~ALlavQ~lm 437 (442)
T KOG2759|consen 426 RYHALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHHHH
Confidence 999999988775
No 57
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.00026 Score=76.87 Aligned_cols=191 Identities=15% Similarity=0.163 Sum_probs=130.9
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCC--chhHHHH
Q 041050 185 SLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGN--DKLQMKL 262 (408)
Q Consensus 185 ~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~--~~~~~~i 262 (408)
.+-.+|. +.+...|.+|+.+|+.++..+++.-..... ..++..+..| .+++|.|+-.|+-+++-++.| +..+...
T Consensus 352 ~l~~~l~-S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l-~DphprVr~AA~naigQ~stdl~p~iqk~~ 428 (1075)
T KOG2171|consen 352 ALEAMLQ-STEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGL-NDPHPRVRYAALNAIGQMSTDLQPEIQKKH 428 (1075)
T ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhc-CCCCHHHHHHHHHHHHhhhhhhcHHHHHHH
Confidence 3444555 468889999999999998775544333322 2455566666 679999999999999999843 4444444
Q ss_pred HhcccHHHHHHhhc-CCCHHHHHHHHHHHHHhhc-cchhhhhHHHhhhhhccCChhhHHHHHhcCcHH-HHHHhccCCCH
Q 041050 263 RSEGGIRALLGMVR-CGHPDVLSQVARGIANFAK-CESRAATQVRFIRCTATGVKSGRSLLIEDGALP-WIVQNANNEAA 339 (408)
Q Consensus 263 ~~~g~l~~L~~lL~-~~~~~v~~~a~~aL~nL~~-~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~-~Lv~lL~~~~~ 339 (408)
. ...++.|+..+. ..++.|+.+|+.++-|++. |..+.... .. ++++. .+..++.++.+
T Consensus 429 ~-e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~p-----------------YL-d~lm~~~l~~L~~~~~~ 489 (1075)
T KOG2171|consen 429 H-ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEP-----------------YL-DGLMEKKLLLLLQSSKP 489 (1075)
T ss_pred H-HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHH-----------------HH-HHHHHHHHHHHhcCCch
Confidence 3 457778888885 6788999999999999985 22221111 11 24455 44446678899
Q ss_pred HHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhccHhh
Q 041050 340 PIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSSSLTF 397 (408)
Q Consensus 340 ~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~ 397 (408)
.++..++.+|+..|......-.=.-...++.|..++.....++.+.+..+++.|-.-.
T Consensus 490 ~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli 547 (1075)
T KOG2171|consen 490 YVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLI 547 (1075)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHH
Confidence 9999999999999876332211113346889999999888788887777766655444
No 58
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.00057 Score=73.32 Aligned_cols=246 Identities=15% Similarity=0.155 Sum_probs=176.5
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050 142 LHKILSLLE-SEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 142 v~~Ll~lL~-s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
++.++.++. ..++.++..|+.++.-++.+.+.-..+++.|.+..|+.+|-+ -|..|..++.+|+.|+.+ +.....-
T Consensus 1773 F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS--~PS~R~~vL~vLYAL~S~-~~i~keA 1849 (2235)
T KOG1789|consen 1773 FPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHS--QPSMRARVLDVLYALSSN-GQIGKEA 1849 (2235)
T ss_pred cHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhc--ChHHHHHHHHHHHHHhcC-cHHHHHH
Confidence 455556665 577889999999999999999999999999999999999974 678899999999999999 9999999
Q ss_pred HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCch---------------hHHHHHhcccHHHHHHhhc--CCCHHH-
Q 041050 221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDK---------------LQMKLRSEGGIRALLGMVR--CGHPDV- 282 (408)
Q Consensus 221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~---------------~~~~i~~~g~l~~L~~lL~--~~~~~v- 282 (408)
++.||+..+..++..+.++..+..++..++.|..++- .-..++. ++..+.+.++. +.+|++
T Consensus 1850 ~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~R-D~PEAaVH~fE~T~EnPELi 1928 (2235)
T KOG1789|consen 1850 LEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLR-DSPEAAVHMFESTSENPELI 1928 (2235)
T ss_pred HhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHh-cCHHHHHHHHhccCCCcccc
Confidence 9999999999888888999999999999999975431 1111222 23355666663 233332
Q ss_pred -----HHHHHHHHHHhhcc-----------------------------------------c-------hhh-hh----H-
Q 041050 283 -----LSQVARGIANFAKC-----------------------------------------E-------SRA-AT----Q- 303 (408)
Q Consensus 283 -----~~~a~~aL~nL~~~-----------------------------------------~-------~~~-~~----~- 303 (408)
+..+...+..++.. + ++. .+ +
T Consensus 1929 Wn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~ 2008 (2235)
T KOG1789|consen 1929 WNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKV 2008 (2235)
T ss_pred cCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHH
Confidence 22222333332220 0 000 00 0
Q ss_pred ----------------HHh-hhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCC
Q 041050 304 ----------------VRF-IRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGG 366 (408)
Q Consensus 304 ----------------~~~-~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g 366 (408)
+.- .+|-+-.++..-+.+-.-|-+|.++..+...+..+-+.|..+|..|+.+.-+...|....
T Consensus 2009 lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~ 2088 (2235)
T KOG1789|consen 2009 LELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLP 2088 (2235)
T ss_pred HHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccc
Confidence 001 156666778877788888999999998877777777899999999999999999999877
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041050 367 ALWELVRISRDCSREDIRSLAHRTLSS 393 (408)
Q Consensus 367 ~i~~L~~ll~~~~~~~~~~~A~~~L~~ 393 (408)
.+..++..+... .+.-.+|..+|+.
T Consensus 2089 ~i~~~m~~mkK~--~~~~GLA~EalkR 2113 (2235)
T KOG1789|consen 2089 CIDGIMKSMKKQ--PSLMGLAAEALKR 2113 (2235)
T ss_pred cchhhHHHHHhc--chHHHHHHHHHHH
Confidence 777788776632 2233355555543
No 59
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00037 Score=75.68 Aligned_cols=169 Identities=18% Similarity=0.155 Sum_probs=119.9
Q ss_pred HhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCc
Q 041050 147 SLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGG 225 (408)
Q Consensus 147 ~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~ 225 (408)
.++.|++..-|..|+.+|..++. ..+.-...... .++..+..|+ ++.|.||.+|+.+++.++.+....-++-...-.
T Consensus 355 ~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~-Il~~Vl~~l~-DphprVr~AA~naigQ~stdl~p~iqk~~~e~l 432 (1075)
T KOG2171|consen 355 AMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPK-ILPIVLNGLN-DPHPRVRYAALNAIGQMSTDLQPEIQKKHHERL 432 (1075)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHHHhhcC-CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhc
Confidence 56678999999999999999987 33333222222 4666677777 578999999999999999986655566666667
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhH-HHHHhcccHHHHHH-hhcCCCHHHHHHHHHHHHHhhccchhhhh
Q 041050 226 ISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQ-MKLRSEGGIRALLG-MVRCGHPDVLSQVARGIANFAKCESRAAT 302 (408)
Q Consensus 226 i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~-~~i~~~g~l~~L~~-lL~~~~~~v~~~a~~aL~nL~~~~~~~~~ 302 (408)
+|.|+..+.+...+.+..+|+.++-|++ .++... .-.. .+.+..++. ++.++.+.++..|..+|+..+.
T Consensus 433 ~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~------- 504 (1075)
T KOG2171|consen 433 PPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIASVAD------- 504 (1075)
T ss_pred cHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-------
Confidence 8899999988888999999999999998 443221 1111 133342333 4468889999999999999984
Q ss_pred HHHhhhhhccCChhhHHHHHh--cCcHHHHHHhccCCC
Q 041050 303 QVRFIRCTATGVKSGRSLLIE--DGALPWIVQNANNEA 338 (408)
Q Consensus 303 ~~~~~i~~~~~~~~~~~~i~~--~g~l~~Lv~lL~~~~ 338 (408)
.....|+. +..+|.|...+.+.+
T Consensus 505 -------------AA~~~F~pY~d~~Mp~L~~~L~n~~ 529 (1075)
T KOG2171|consen 505 -------------AAQEKFIPYFDRLMPLLKNFLQNAD 529 (1075)
T ss_pred -------------HHhhhhHhHHHHHHHHHHHHHhCCC
Confidence 12223332 257788888887654
No 60
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.97 E-value=2.2e-05 Score=60.97 Aligned_cols=87 Identities=28% Similarity=0.403 Sum_probs=70.8
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050 142 LHKILSLL-ESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 142 v~~Ll~lL-~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
||.|++.| +++++.+|..++++|+.+.. ...++.|+.++. ++++.+|..|+++|+.+...
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~i~~~-------- 61 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLK-DEDPMVRRAAARALGRIGDP-------- 61 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHT-SSSHHHHHHHHHHHHCCHHH--------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCH--------
Confidence 58899988 79999999999999995421 235999999997 58999999999999988432
Q ss_pred HhcCcHHHHHHHhhcCCCHHHHHHHHHHHH
Q 041050 221 MAQGGISLLSTTAADAEDPQTLRMVAGAIA 250 (408)
Q Consensus 221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~ 250 (408)
.+++.|..++.++++..++..++.+|+
T Consensus 62 ---~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 ---EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 378999999877777788888888874
No 61
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=0.00023 Score=76.24 Aligned_cols=218 Identities=18% Similarity=0.172 Sum_probs=162.5
Q ss_pred HhcCHHHHHHhhcCCCHHHHHHHHHHHHHHc-CCchhHHHHHHhCCHHHHHHHHcCC--CCHHHHHHHHHHHHHhccCCh
Q 041050 138 EQVGLHKILSLLESEDANVRIHAVKVVANLA-AEEANQEKIVEAGGLSSLLMLLRSF--EDETIRRVAAGAIANLAMNAE 214 (408)
Q Consensus 138 ~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~L~~lL~~~--~~~~v~~~A~~aL~nLa~~~~ 214 (408)
.-|.+|-.++||.++-.++|-.-+-+=+.|- .++..+..+++.+|-.-.++.|.++ -+++.|..|+.+|+.+..+.+
T Consensus 510 sVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~ 589 (1387)
T KOG1517|consen 510 SVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFK 589 (1387)
T ss_pred ccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccc
Confidence 4466899999999999999888777777664 4999999999999998888888752 356899999999999999989
Q ss_pred hhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 041050 215 ANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANF 293 (408)
Q Consensus 215 ~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL 293 (408)
..|+...+.+.+..-+..|.++++|-++.-++-+|+.|= ..++.|=.=++.++...|..+|..+-|+|+..|..||..|
T Consensus 590 lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtf 669 (1387)
T KOG1517|consen 590 LGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTF 669 (1387)
T ss_pred hhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 999999999988887888855446667777777888875 6667766667788999999999999999999999999999
Q ss_pred hccchh---hhhHHHhhhhhccCChhhHHHHHhcCcH---HHHHHhccCCCHHHHHHHHHHHHHHccCchhH
Q 041050 294 AKCESR---AATQVRFIRCTATGVKSGRSLLIEDGAL---PWIVQNANNEAAPIRRHIELALCHLAQHEVNA 359 (408)
Q Consensus 294 ~~~~~~---~~~~~~~~i~~~~~~~~~~~~i~~~g~l---~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~ 359 (408)
....++ ...+.+...- .-++ .+.-+++-.. -.++.+++.+.+-++.+.+.+|.+++.+..+.
T Consensus 670 l~~~~d~fde~~~~~~~~~---~l~~-~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~ 737 (1387)
T KOG1517|consen 670 LSNGSDNFDEQTLVVEEEI---DLDD-ERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSH 737 (1387)
T ss_pred hcccccccchhhhhhhhhh---cchh-hhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHH
Confidence 863211 1111100000 0000 0011222222 36777888889999999999999988774443
No 62
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.95 E-value=0.0012 Score=66.48 Aligned_cols=197 Identities=16% Similarity=0.070 Sum_probs=132.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM 221 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~ 221 (408)
++.++..|.+.++.++..++.+|+.+-. ....+.|+.+|. +.++.++..++.++.....+
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~----------~~a~~~L~~~L~-~~~p~vR~aal~al~~r~~~--------- 147 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG----------RQAEPWLEPLLA-ASEPPGRAIGLAALGAHRHD--------- 147 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc----------hHHHHHHHHHhc-CCChHHHHHHHHHHHhhccC---------
Confidence 7888899998999999999999875432 445788888897 46788888888777663333
Q ss_pred hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhh
Q 041050 222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAA 301 (408)
Q Consensus 222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~ 301 (408)
..+.|..+| +++++.++..++++|+.+.. ...++.|...+.+.++.|+..|++++..+.. ..+.
T Consensus 148 ---~~~~L~~~L-~d~d~~Vra~A~raLG~l~~----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A~ 211 (410)
T TIGR02270 148 ---PGPALEAAL-THEDALVRAAALRALGELPR----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS--RLAW 211 (410)
T ss_pred ---hHHHHHHHh-cCCCHHHHHHHHHHHHhhcc----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhHH
Confidence 456788888 57889999999999988752 3455667777899999999999999988752 2222
Q ss_pred hHHHhhhhhccCChhhHH--HHH----hcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHH
Q 041050 302 TQVRFIRCTATGVKSGRS--LLI----EDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRIS 375 (408)
Q Consensus 302 ~~~~~~i~~~~~~~~~~~--~i~----~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll 375 (408)
..+.. .....|.+..+. .+. ....+++|..+++.+. ++..++++++.+... ..++.|+..+
T Consensus 212 ~~l~~-~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p----------~av~~L~~~l 278 (410)
T TIGR02270 212 GVCRR-FQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAAA--TRREALRAVGLVGDV----------EAAPWCLEAM 278 (410)
T ss_pred HHHHH-HHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcChh--hHHHHHHHHHHcCCc----------chHHHHHHHh
Confidence 22111 001112211111 111 2256778888887654 888898888866543 2577777777
Q ss_pred hcCCHHHHHHHHHHH
Q 041050 376 RDCSREDIRSLAHRT 390 (408)
Q Consensus 376 ~~~~~~~~~~~A~~~ 390 (408)
.... ++..|...
T Consensus 279 ~d~~---~aR~A~eA 290 (410)
T TIGR02270 279 REPP---WARLAGEA 290 (410)
T ss_pred cCcH---HHHHHHHH
Confidence 6332 44444433
No 63
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.94 E-value=4.6e-05 Score=60.92 Aligned_cols=68 Identities=31% Similarity=0.401 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh-cCCCHHHHHHHHHHHHHHh-CCchhHHHHHhc
Q 041050 198 IRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAA-DAEDPQTLRMVAGAIANLC-GNDKLQMKLRSE 265 (408)
Q Consensus 198 v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~ 265 (408)
++...+.+|+||+..++.+|+.+.+.||+|.++..-. +..+|-+++.|..+|.||| +|++||+.|.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3556788999999999999999999999999887642 5567999999999999999 999999988763
No 64
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.0038 Score=61.63 Aligned_cols=238 Identities=17% Similarity=0.152 Sum_probs=169.5
Q ss_pred cchhhhhhcCCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc----------hhHHHHHHhCCHHHHH
Q 041050 118 KHSQFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEE----------ANQEKIVEAGGLSSLL 187 (408)
Q Consensus 118 ~~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~----------~~~~~i~~~g~i~~L~ 187 (408)
..+|-...++..-+=...+++-++|+.|+.+|.++|.++-...+..|.-|+..+ .....+++.+.++.|+
T Consensus 103 d~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 103 DIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 456666666666666678999999999999999999999999999999998522 2346677777889998
Q ss_pred HHHcCC-----CCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh-cCCCHHHHHHHHHHHHHHh-CCchhHH
Q 041050 188 MLLRSF-----EDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAA-DAEDPQTLRMVAGAIANLC-GNDKLQM 260 (408)
Q Consensus 188 ~lL~~~-----~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~v~~~a~~aL~nL~-~~~~~~~ 260 (408)
+-+..- +...-...+...+-|+..-.+.....+++.|-+..|+.-+. ..+-..-...+..+++=+- .+++++.
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~ 262 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK 262 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence 877421 12334555777888888877999999999988888776443 3233345567777777666 5556888
Q ss_pred HHHhcccHHHHHHhh---cCCCH------HHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHH
Q 041050 261 KLRSEGGIRALLGMV---RCGHP------DVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIV 331 (408)
Q Consensus 261 ~i~~~g~l~~L~~lL---~~~~~------~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv 331 (408)
.+...+|+..+++-+ +..|| +...+.--+|+.+. -.+.++..+....++....
T Consensus 263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~l------------------m~~~nr~~Fl~~EGlqLm~ 324 (536)
T KOG2734|consen 263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLL------------------MAPANRERFLKGEGLQLMN 324 (536)
T ss_pred hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHh------------------cChhhhhhhhccccHHHHH
Confidence 888899999988866 33332 22333334444433 5788888898877776554
Q ss_pred HhccCCCHHHHHHHHHHHHHHccCc---hhHHHHHhCCcHHHHHHH
Q 041050 332 QNANNEAAPIRRHIELALCHLAQHE---VNAREMISGGALWELVRI 374 (408)
Q Consensus 332 ~lL~~~~~~v~~~a~~aL~~La~~~---~~~~~l~~~g~i~~L~~l 374 (408)
-+++. ....+..+..+|-+...++ ++...+++.+|...+..+
T Consensus 325 Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~ 369 (536)
T KOG2734|consen 325 LMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPL 369 (536)
T ss_pred HHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHH
Confidence 45553 5556777889998888764 567778888888766553
No 65
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.89 E-value=0.00046 Score=69.36 Aligned_cols=154 Identities=14% Similarity=0.073 Sum_probs=118.8
Q ss_pred hcCHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhH
Q 041050 139 QVGLHKILSLLE-SEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQ 217 (408)
Q Consensus 139 ~~~v~~Ll~lL~-s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~ 217 (408)
..+++.++..|. .++.+++..++.++.. .++ ..++..|+..|.+ .++.++..++.+|..+-..
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~--~~~--------~~~~~~L~~~L~d-~~~~vr~aaa~ALg~i~~~----- 116 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLA--QED--------ALDLRSVLAVLQA-GPEGLCAGIQAALGWLGGR----- 116 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhc--cCC--------hHHHHHHHHHhcC-CCHHHHHHHHHHHhcCCch-----
Confidence 346888999995 6778887766666542 211 1138899999984 6778999999999876554
Q ss_pred HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 041050 218 ELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCE 297 (408)
Q Consensus 218 ~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~ 297 (408)
+..+.|+.+| .+.+|.++..++.++... .....+.+..+|+++++.|+..|+++|+.+..
T Consensus 117 ------~a~~~L~~~L-~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-- 176 (410)
T TIGR02270 117 ------QAEPWLEPLL-AASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPR-- 176 (410)
T ss_pred ------HHHHHHHHHh-cCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--
Confidence 4677888898 678899998888777662 22345678888999999999999999999863
Q ss_pred hhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050 298 SRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ 354 (408)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~ 354 (408)
...++.|...+.+.++.||..|..++..+..
T Consensus 177 --------------------------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 177 --------------------------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS 207 (410)
T ss_pred --------------------------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 3577788888999999999999999877754
No 66
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.87 E-value=7.4e-05 Score=59.75 Aligned_cols=68 Identities=29% Similarity=0.314 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCC-CCHHHHHHHHHHHHHhccCChhhHHHHHhcC
Q 041050 157 RIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSF-EDETIRRVAAGAIANLAMNAEANQELIMAQG 224 (408)
Q Consensus 157 ~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~-~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g 224 (408)
+...+++|+||++ ++.+++.+.+.||||.+++...-+ .+|-+++.|.++|.||+.++++||+.|.+..
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~ 72 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLE 72 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcc
Confidence 5567889999999 899999999999999999987533 5799999999999999999999999987643
No 67
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.86 E-value=4.8e-05 Score=59.02 Aligned_cols=87 Identities=23% Similarity=0.318 Sum_probs=70.4
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHH
Q 041050 226 ISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVR 305 (408)
Q Consensus 226 i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~ 305 (408)
||.|+..|.+++++.++..++.+|+++. +...++.|..++.++++.++..|+++|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence 5788998877899999999999998542 2245888999999999999999999999885
Q ss_pred hhhhhccCChhhHHHHHhcCcHHHHHHhccCC-CHHHHHHHHHHHH
Q 041050 306 FIRCTATGVKSGRSLLIEDGALPWIVQNANNE-AAPIRRHIELALC 350 (408)
Q Consensus 306 ~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~a~~aL~ 350 (408)
+..+++.|.+++.++ +..+|..|..+|+
T Consensus 60 -----------------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -----------------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -----------------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -----------------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 234889999988775 5556888888874
No 68
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.83 E-value=0.0014 Score=64.33 Aligned_cols=157 Identities=25% Similarity=0.345 Sum_probs=117.6
Q ss_pred cCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH
Q 041050 140 VGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL 219 (408)
Q Consensus 140 ~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 219 (408)
..++.++.++.+++..+|..|+.+++.+.. ...++.|..++. +.++.+|..|+.+|+++-..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~-d~~~~vr~~a~~aLg~~~~~------- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLS-DEDPRVRDAAADALGELGDP------- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhc-CCCHHHHHHHHHHHHccCCh-------
Confidence 357888999999999999999999776544 346899999998 46889999999988888765
Q ss_pred HHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCH------------HHHHHHH
Q 041050 220 IMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHP------------DVLSQVA 287 (408)
Q Consensus 220 i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~------------~v~~~a~ 287 (408)
..++.|+.++..+++..++..++++|..+- +..++..++..+..+.. .++..+.
T Consensus 105 ----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 105 ----EAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred ----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 268899999865688899999999998764 23346667777765542 3455555
Q ss_pred HHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc
Q 041050 288 RGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE 356 (408)
Q Consensus 288 ~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 356 (408)
.++..+. +...++.+...+......+|..|..+|+.+..+.
T Consensus 171 ~~l~~~~----------------------------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 171 EALGELG----------------------------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred HHHHHcC----------------------------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence 5555553 2346677777777777788888888887777664
No 69
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.00015 Score=72.75 Aligned_cols=202 Identities=12% Similarity=0.086 Sum_probs=144.0
Q ss_pred HHHHHHHH--HHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh
Q 041050 158 IHAVKVVA--NLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAA 234 (408)
Q Consensus 158 ~~A~~aL~--nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~ 234 (408)
..+++++. .++. -...|.-+.+....++|+.+|+. ++.-+.--+..+++|........+..+.+.|.+..|+.++.
T Consensus 405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~-Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~ 483 (743)
T COG5369 405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN-PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM 483 (743)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC-ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh
Confidence 34455554 4443 24456666677778999999984 44445555889999998887888999999999999999985
Q ss_pred cCCCHHHHHHHHHHHHHHh-CCch-hHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhcc
Q 041050 235 DAEDPQTLRMVAGAIANLC-GNDK-LQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTAT 312 (408)
Q Consensus 235 ~~~~~~v~~~a~~aL~nL~-~~~~-~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~ 312 (408)
+.|..++....|++.++. ++.+ .+-.....-|...++.....++-.++.++...+.|++ |+++-
T Consensus 484 -sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNft-c~~~k------------ 549 (743)
T COG5369 484 -SKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFT-CDTSK------------ 549 (743)
T ss_pred -cchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcc-ccccc------------
Confidence 567789999999999998 4433 3556677788898999999999999999999999999 63331
Q ss_pred CChhhHHHHHhc---C-cHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHH--hCCcHHHHHHHH
Q 041050 313 GVKSGRSLLIED---G-ALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMI--SGGALWELVRIS 375 (408)
Q Consensus 313 ~~~~~~~~i~~~---g-~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~--~~g~i~~L~~ll 375 (408)
+.+.+..++.. . ....|+..+...+|-.....++.|.+++..+++.++++ +...+..+..++
T Consensus 550 -nEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 550 -NEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred -ccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 11222222221 1 34466777777777777778889988887777766766 344444444433
No 70
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.54 E-value=0.00021 Score=46.87 Aligned_cols=39 Identities=21% Similarity=0.476 Sum_probs=36.1
Q ss_pred chhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050 256 DKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFA 294 (408)
Q Consensus 256 ~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~ 294 (408)
++++..+++.|+++.|+.++.++++++++.++++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 457888999999999999999999999999999999997
No 71
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.0058 Score=65.98 Aligned_cols=147 Identities=16% Similarity=0.177 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHHcC-CchhHHHH----HHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHH
Q 041050 154 ANVRIHAVKVVANLAA-EEANQEKI----VEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISL 228 (408)
Q Consensus 154 ~~v~~~A~~aL~nLa~-~~~~~~~i----~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~ 228 (408)
.+-..-++.+|.|+.. +|+....+ .--|-.+.+...+....++.++..|+.++..+..+ .+.-..++..|.+..
T Consensus 1739 ~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHH
Confidence 3455678899999977 77655433 22355788888888777889999999999999999 889999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh-cCCCHHHHHHHHHHHHHhhc---cchhhhhH
Q 041050 229 LSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV-RCGHPDVLSQVARGIANFAK---CESRAATQ 303 (408)
Q Consensus 229 Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL-~~~~~~v~~~a~~aL~nL~~---~~~~~~~~ 303 (408)
|+.+|. +-|..+..++.+|..|+.+++.-....++|++..++.++ .+.++..+.+++..++.|.. .+++.++-
T Consensus 1818 LL~lLH--S~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~IT 1894 (2235)
T KOG1789|consen 1818 LLTLLH--SQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTIT 1894 (2235)
T ss_pred HHHHHh--cChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeee
Confidence 999983 467899999999999999999999999999999999988 57788999999999999986 34554433
No 72
>PTZ00429 beta-adaptin; Provisional
Probab=97.52 E-value=0.018 Score=62.15 Aligned_cols=175 Identities=13% Similarity=0.120 Sum_probs=96.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHH-HHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVK-VVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~-aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
+..|-..|++.+..-+..+++ ++.+++.+.+... +.+.++.++. +++..+++.+--.+.+++...++..-.
T Consensus 34 ~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~------LF~dVvk~~~-S~d~elKKLvYLYL~~ya~~~pelalL- 105 (746)
T PTZ00429 34 GAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSY------LFVDVVKLAP-STDLELKKLVYLYVLSTARLQPEKALL- 105 (746)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchH------HHHHHHHHhC-CCCHHHHHHHHHHHHHHcccChHHHHH-
Confidence 344445555555444444443 4455554432221 3455556665 356777777666666666642322111
Q ss_pred HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhh
Q 041050 221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA 300 (408)
Q Consensus 221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~ 300 (408)
.+..+.+=+ .+++|-++..|+++++++.. ++.-.. .+..+.+.+.+++|-|++.|+.|+..+-.
T Consensus 106 ----aINtl~KDl-~d~Np~IRaLALRtLs~Ir~-~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~----- 169 (746)
T PTZ00429 106 ----AVNTFLQDT-TNSSPVVRALAVRTMMCIRV-SSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFH----- 169 (746)
T ss_pred ----HHHHHHHHc-CCCCHHHHHHHHHHHHcCCc-HHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHh-----
Confidence 133333333 34667777777777766643 122122 23345566667777777777777777653
Q ss_pred hhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 301 ATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 301 ~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
.+++ .+.+.|+++.|..++...++.|..+|+.+|..+...
T Consensus 170 ------------~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 170 ------------DDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred ------------hCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 2221 223456677777777777777777777777777644
No 73
>PF05536 Neurochondrin: Neurochondrin
Probab=97.50 E-value=0.0059 Score=63.82 Aligned_cols=154 Identities=18% Similarity=0.237 Sum_probs=118.3
Q ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChh---hHHHHHhcCcHHHHHHHhhcC------CCHHHHHHHHHHHHHH
Q 041050 182 GLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEA---NQELIMAQGGISLLSTTAADA------EDPQTLRMVAGAIANL 252 (408)
Q Consensus 182 ~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~---~~~~i~~~g~i~~Lv~lL~~~------~~~~v~~~a~~aL~nL 252 (408)
.+..-+.+|++ .+.+-+-.++-.+..+..+.+. .++.|.+.=|.+-|-++|+.. +....+..++.+|+.+
T Consensus 6 ~l~~c~~lL~~-~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 6 SLEKCLSLLKS-ADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHhcc-CCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 36777889985 4456666677777888887553 244688888888888888542 3345788899999999
Q ss_pred hCCchhHHHHHhcccHHHHHHhhcCCCH-HHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHH
Q 041050 253 CGNDKLQMKLRSEGGIRALLGMVRCGHP-DVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIV 331 (408)
Q Consensus 253 ~~~~~~~~~i~~~g~l~~L~~lL~~~~~-~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv 331 (408)
|.+|+....=--.+-+|.|++.+...+. .+...|..+|..++ .+++++..+++.|+++.|+
T Consensus 85 ~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia------------------s~~~G~~aLl~~g~v~~L~ 146 (543)
T PF05536_consen 85 CRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA------------------SSPEGAKALLESGAVPALC 146 (543)
T ss_pred cCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH------------------cCcHhHHHHHhcCCHHHHH
Confidence 9887764322223569999999965555 89999999999998 6899999999999999999
Q ss_pred HhccCCCHHHHHHHHHHHHHHccC
Q 041050 332 QNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 332 ~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
+.+.+ .+.....|..++.+++..
T Consensus 147 ei~~~-~~~~~E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 147 EIIPN-QSFQMEIALNLLLNLLSR 169 (543)
T ss_pred HHHHh-CcchHHHHHHHHHHHHHh
Confidence 99987 555677888888887765
No 74
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.0016 Score=67.12 Aligned_cols=208 Identities=14% Similarity=0.108 Sum_probs=137.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhc
Q 041050 144 KILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQ 223 (408)
Q Consensus 144 ~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~ 223 (408)
.+++-+...++-+|...--++..++.....+.. ..++|.|..+|.+ ++....+-|.+||..++.++...-+.=+-+
T Consensus 94 ~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~w---pelLp~L~~~L~s-~d~n~~EgA~~AL~KIcEDsa~~lds~~~~ 169 (885)
T KOG2023|consen 94 ECLHGLGDASPLIRATVGIVITTIASTGGLQHW---PELLPQLCELLDS-PDYNTCEGAFGALQKICEDSAQFLDSDVLT 169 (885)
T ss_pred HHHhhccCchHHHHhhhhheeeeeecccccccc---hhHHHHHHHHhcC-CcccccchhHHHHHHHHhhhHHHHhhhccc
Confidence 344555556666665555555555552222211 4579999999985 667889999999999999865433331112
Q ss_pred C----cHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchh
Q 041050 224 G----GISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESR 299 (408)
Q Consensus 224 g----~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~ 299 (408)
. -+|.++.+. ++++|.++..|.+++-.+.......-...=...+..+..+...++|+|++++|+++..|....++
T Consensus 170 rpl~~mipkfl~f~-~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d 248 (885)
T KOG2023|consen 170 RPLNIMIPKFLQFF-KHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD 248 (885)
T ss_pred CchHHhHHHHHHHH-hCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH
Confidence 2 356777776 66799999999998876653222111111134566777788889999999999999999851111
Q ss_pred hhhHHHhhhhhccCChhhHHHHH--hcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHH--hCCcHHHHHHHH
Q 041050 300 AATQVRFIRCTATGVKSGRSLLI--EDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMI--SGGALWELVRIS 375 (408)
Q Consensus 300 ~~~~~~~~i~~~~~~~~~~~~i~--~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~--~~g~i~~L~~ll 375 (408)
.+. =.++++.+++..+..+.+|..+||.....+|..+.+...+. -...+|.|++=.
T Consensus 249 --------------------kl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M 308 (885)
T KOG2023|consen 249 --------------------KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGM 308 (885)
T ss_pred --------------------hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccC
Confidence 111 12577777888888888999999999999999886655544 244566665533
Q ss_pred h
Q 041050 376 R 376 (408)
Q Consensus 376 ~ 376 (408)
.
T Consensus 309 ~ 309 (885)
T KOG2023|consen 309 V 309 (885)
T ss_pred c
Confidence 3
No 75
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.46 E-value=0.002 Score=65.85 Aligned_cols=175 Identities=16% Similarity=0.087 Sum_probs=127.6
Q ss_pred HHHHHHhccCChhhHHHHHhcCcHHHHHHHh---------hcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHH
Q 041050 203 AGAIANLAMNAEANQELIMAQGGISLLSTTA---------ADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALL 272 (408)
Q Consensus 203 ~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL---------~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~ 272 (408)
+.+|.-++.+ +.+.+.+....++..|+.+- ....++.+...|+.+|+|+. .++..|+.+.+.|+...++
T Consensus 2 L~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 5677888888 88888888888899888876 56678899999999999998 8889999999999999999
Q ss_pred HhhcCC-----CHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhc-CcHHHHHHhccC----------
Q 041050 273 GMVRCG-----HPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIED-GALPWIVQNANN---------- 336 (408)
Q Consensus 273 ~lL~~~-----~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~-g~l~~Lv~lL~~---------- 336 (408)
..++.. ++++.....+.|.-++. ...+.+..+++. +++..++..+..
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa-----------------~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~ 143 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTA-----------------LRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQ 143 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhc-----------------CChhHHHHHHHHhhhHHHHHHHHHHHHhccccccc
Confidence 999755 78888889999988886 566666666644 666666554321
Q ss_pred -------CCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcC--------CHHHHHHHHHHHHhccH
Q 041050 337 -------EAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDC--------SREDIRSLAHRTLSSSL 395 (408)
Q Consensus 337 -------~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~--------~~~~~~~~A~~~L~~~~ 395 (408)
.+.....++...+.|+..+......-...+.++.|+.++... .-+.....+..+|.+.|
T Consensus 144 ~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlp 217 (446)
T PF10165_consen 144 EPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLP 217 (446)
T ss_pred ccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCC
Confidence 144557788999999987743322222444555565554422 12236666777776654
No 76
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.46 E-value=0.0033 Score=61.59 Aligned_cols=158 Identities=22% Similarity=0.297 Sum_probs=113.3
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050 141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
.++.+..++.+.++.+|..|+.+|+.+-. ...++.|+.++..+.+..+|..+.++|+.+... .
T Consensus 75 av~~l~~~l~d~~~~vr~~a~~aLg~~~~----------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-~------ 137 (335)
T COG1413 75 AVPLLRELLSDEDPRVRDAAADALGELGD----------PEAVPPLVELLENDENEGVRAAAARALGKLGDE-R------ 137 (335)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHccCC----------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-h------
Confidence 48999999999999999999998887644 446899999998667889999999999998776 2
Q ss_pred HhcCcHHHHHHHhhcCCC---------H--HHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHH
Q 041050 221 MAQGGISLLSTTAADAED---------P--QTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARG 289 (408)
Q Consensus 221 ~~~g~i~~Lv~lL~~~~~---------~--~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~a 289 (408)
++..|+..+.+... + .++..++.++..+ .+...++.+..++...+..++..++.+
T Consensus 138 ----a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~a 203 (335)
T COG1413 138 ----ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL----------GDPEAIPLLIELLEDEDADVRRAAASA 203 (335)
T ss_pred ----hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHH
Confidence 47778888743221 1 2344444444433 233467778888988888999999999
Q ss_pred HHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 290 IANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 290 L~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
|..+.. ++ ....+.+...+.+++..+|..++.++..+-..
T Consensus 204 L~~~~~-----------------~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~ 243 (335)
T COG1413 204 LGQLGS-----------------EN---------VEAADLLVKALSDESLEVRKAALLALGEIGDE 243 (335)
T ss_pred HHHhhc-----------------ch---------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcc
Confidence 999874 11 23445666666666666666666666555443
No 77
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.41 E-value=0.00039 Score=45.53 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=35.4
Q ss_pred hhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050 316 SGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ 354 (408)
Q Consensus 316 ~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~ 354 (408)
+.+..+.+.|+++.|++++.+++++++..++++|.|++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 366778899999999999999999999999999999974
No 78
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.069 Score=53.05 Aligned_cols=194 Identities=16% Similarity=0.188 Sum_probs=138.4
Q ss_pred HHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC---------hhhHHHHHhcCcHHHHHHHhhc
Q 041050 165 ANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNA---------EANQELIMAQGGISLLSTTAAD 235 (408)
Q Consensus 165 ~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~---------~~~~~~i~~~g~i~~Lv~lL~~ 235 (408)
.-+|..|+.-..+++.++++.|+.+|. +++.++....+..+-.|+-.+ ....+.+++.+.++.|+..+.+
T Consensus 109 hvlAt~PdLYp~lveln~V~slL~LLg-HeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveR 187 (536)
T KOG2734|consen 109 HVLATMPDLYPILVELNAVQSLLELLG-HENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVER 187 (536)
T ss_pred HhhhcChHHHHHHHHhccHHHHHHHhc-CCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHH
Confidence 456677888889999999999999999 678899999999998887652 1345678888899999877642
Q ss_pred ---C--CCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcC--CCHHHHHHHHHHHHHhhccchhhhhHHHhh
Q 041050 236 ---A--EDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRC--GHPDVLSQVARGIANFAKCESRAATQVRFI 307 (408)
Q Consensus 236 ---~--~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~--~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~ 307 (408)
+ ++..-...+...+-|+. -.+.....+++.|.+..|+..+.. +-......|...++-+..
T Consensus 188 LdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq------------ 255 (536)
T KOG2734|consen 188 LDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQ------------ 255 (536)
T ss_pred hhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhc------------
Confidence 1 12234557788888998 778888889999999999886643 333455567778877775
Q ss_pred hhhccCChhhHHHHHhcCcHHHHHHhc----cCC-----CHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHh
Q 041050 308 RCTATGVKSGRSLLIEDGALPWIVQNA----NNE-----AAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISR 376 (408)
Q Consensus 308 i~~~~~~~~~~~~i~~~g~l~~Lv~lL----~~~-----~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~ 376 (408)
.....+.....-.++..+++-+ ..+ +.+.-.+-.-+||.+-..+.++..+....++....-+++
T Consensus 256 -----~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr 328 (536)
T KOG2734|consen 256 -----NSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLR 328 (536)
T ss_pred -----cCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHH
Confidence 2233344444445555554433 222 456677788888988899999999987777765555554
No 79
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=97.27 E-value=0.064 Score=58.19 Aligned_cols=253 Identities=19% Similarity=0.189 Sum_probs=155.0
Q ss_pred HHHHhcCHHHHHHhhcC-----CCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHc---CCCC----HHHHHHH
Q 041050 135 KLFEQVGLHKILSLLES-----EDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLR---SFED----ETIRRVA 202 (408)
Q Consensus 135 ~l~~~~~v~~Ll~lL~s-----~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~---~~~~----~~v~~~A 202 (408)
.+-+-||+..++.++.+ ....+....+..|...+.-+.||.++++.|+++.|+..|. ..+. +.+....
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 34456899999988874 3345666677777777778999999999999999999884 1222 4555655
Q ss_pred HHHHHHhccCChhhHHH-----HHhcC-----c---HHHHHHHhhc---CCCHHHHHHHHHHHHHHh-CCchhHHHHHhc
Q 041050 203 AGAIANLAMNAEANQEL-----IMAQG-----G---ISLLSTTAAD---AEDPQTLRMVAGAIANLC-GNDKLQMKLRSE 265 (408)
Q Consensus 203 ~~aL~nLa~~~~~~~~~-----i~~~g-----~---i~~Lv~lL~~---~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~ 265 (408)
+.++-.|..+ ...... ..... . +..|++.+.. ..++.+....+++|-+|+ ++++.-+.+++.
T Consensus 192 L~IiE~ll~e-a~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~ 270 (802)
T PF13764_consen 192 LEIIESLLSE-ANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH 270 (802)
T ss_pred HHHHHHHHHH-HhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH
Confidence 5565555443 111111 11222 2 4455555532 246889999999999999 777777777653
Q ss_pred ccHHHHHHhhcC---CCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCC----
Q 041050 266 GGIRALLGMVRC---GHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEA---- 338 (408)
Q Consensus 266 g~l~~L~~lL~~---~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~---- 338 (408)
++..+++=.- ..++- ..-+.+++.++..-++.. .-...++.+++.|++...+.++....
T Consensus 271 --F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~-----------~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~ 336 (802)
T PF13764_consen 271 --FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNS-----------NGNRLKDKILESGIVQDAIDYLLKHFPSLK 336 (802)
T ss_pred --HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCC-----------chHHHHHHHHHhhHHHHHHHHHHHhCcccc
Confidence 2322232111 11111 122445555543100000 11456888899999998888775432
Q ss_pred ----HHH--------HHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHH---HHHhccHhhHHHHH
Q 041050 339 ----API--------RRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAH---RTLSSSLTFRAEMR 402 (408)
Q Consensus 339 ----~~v--------~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~---~~L~~~~~~~~~~~ 402 (408)
++. ...+...|.-||.+....+.++...+++.+-.|=..++.+.+-.+|- .+|+.++.+...+.
T Consensus 337 ~~~s~eWk~~l~~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~~v~~~I~ 415 (802)
T PF13764_consen 337 NTDSPEWKEFLSRPSLPYILRLLRGLARGHEPTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENEDVAKKIQ 415 (802)
T ss_pred cCCCHHHHHHhcCCcHHHHHHHHHHHHhcCHHHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcChhHHHHHH
Confidence 222 23467788888888665566677778877666666666666666666 67777777654443
No 80
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.26 E-value=0.00065 Score=47.93 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 041050 239 PQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANF 293 (408)
Q Consensus 239 ~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL 293 (408)
|.++..++++|++++........-.-...++.|..+|.++++.|+..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999999984443333334457899999999999999999999999875
No 81
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.25 E-value=0.017 Score=55.09 Aligned_cols=200 Identities=14% Similarity=0.113 Sum_probs=131.2
Q ss_pred CCHHHHHHHHHHHHHHcCCchhHHHHHHhCC-HHHHHHHHcCC-CCHHHHHHHHHHHHHhccCChhhHHHHHh-cCcHHH
Q 041050 152 EDANVRIHAVKVVANLAAEEANQEKIVEAGG-LSSLLMLLRSF-EDETIRRVAAGAIANLAMNAEANQELIMA-QGGISL 228 (408)
Q Consensus 152 ~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~-i~~L~~lL~~~-~~~~v~~~A~~aL~nLa~~~~~~~~~i~~-~g~i~~ 228 (408)
-++-.|..|++.|.++...++.|..+-.++- -..++.++.++ .+.+++.+.+-.+|.++.+ +...+.|-. .+-+.-
T Consensus 161 i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K~~dli~d 239 (432)
T COG5231 161 IDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDKMDDLIND 239 (432)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHH
Confidence 3445788899999999999998888776654 46778888754 2478899999999999999 666544332 234566
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhC-Cc--hhHHHHHhcccHHHHHHhhcC--CCHHHHHHHHH---HHH---------
Q 041050 229 LSTTAADAEDPQTLRMVAGAIANLCG-ND--KLQMKLRSEGGIRALLGMVRC--GHPDVLSQVAR---GIA--------- 291 (408)
Q Consensus 229 Lv~lL~~~~~~~v~~~a~~aL~nL~~-~~--~~~~~i~~~g~l~~L~~lL~~--~~~~v~~~a~~---aL~--------- 291 (408)
|+.+.+....+.+.+.+++++.|++. .+ .....+..+++.+..-.++.. .|.++....-+ .+-
T Consensus 240 li~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f 319 (432)
T COG5231 240 LIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 77777666667899999999999984 32 233344444455544444432 34444321111 111
Q ss_pred -----Hhhc---cchhh----------hhHHH------------------------------hhhhhccCChhhHHHHHh
Q 041050 292 -----NFAK---CESRA----------ATQVR------------------------------FIRCTATGVKSGRSLLIE 323 (408)
Q Consensus 292 -----nL~~---~~~~~----------~~~~~------------------------------~~i~~~~~~~~~~~~i~~ 323 (408)
.|-. |+++. ...+. +++.+ ..|+.+..+..
T Consensus 320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr--~~PE~~~vl~K 397 (432)
T COG5231 320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVR--ASPEINAVLSK 397 (432)
T ss_pred HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHH--hCchHHHHHHH
Confidence 1100 11110 00000 01112 56889999999
Q ss_pred cCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050 324 DGALPWIVQNANNEAAPIRRHIELALCHLAQ 354 (408)
Q Consensus 324 ~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~ 354 (408)
+|+=..++.++++++++|+-+|..|+..+..
T Consensus 398 yg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 398 YGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred hhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 9999999999999999999999999877643
No 82
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.24 E-value=0.00068 Score=47.81 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHH
Q 041050 280 PDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHL 352 (408)
Q Consensus 280 ~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~L 352 (408)
|.++..|+++|++++. +.++.... .-..+++.|+.++.++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~-----------------~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAE-----------------GCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTT-----------------TTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhc-----------------ccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999999885 33333333 3347899999999999999999999999875
No 83
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.081 Score=50.77 Aligned_cols=222 Identities=18% Similarity=0.128 Sum_probs=156.8
Q ss_pred hHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHH--HHHHcCCCCHHHHHHHHHHHHHh
Q 041050 132 PITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSL--LMLLRSFEDETIRRVAAGAIANL 209 (408)
Q Consensus 132 ~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L--~~lL~~~~~~~v~~~A~~aL~nL 209 (408)
.+.-++..+..+.++..+..++.++-..|...+..++..+..-+.+++..-+..+ .++-.. -+.-+|......+..+
T Consensus 120 eillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaak-cndiaRvRVleLIiei 198 (524)
T KOG4413|consen 120 EILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAK-CNDIARVRVLELIIEI 198 (524)
T ss_pred HHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhh-hhhHHHHHHHHHHHHH
Confidence 3444566777888889999999999999999999999999999999988776544 333332 2445666678888888
Q ss_pred ccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhc--CCCHHHHHHHH
Q 041050 210 AMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVR--CGHPDVLSQVA 287 (408)
Q Consensus 210 a~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~--~~~~~v~~~a~ 287 (408)
..-++......-..|-+..|..-|...+|.-++..+......|+.....++.+-+.|.+..+.+++. +.+|--.-.++
T Consensus 199 fSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfral 278 (524)
T KOG4413|consen 199 FSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRAL 278 (524)
T ss_pred HhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHH
Confidence 8877888888888898888887776667777888889999999988889999999999999999884 44554444344
Q ss_pred HHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCC
Q 041050 288 RGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGG 366 (408)
Q Consensus 288 ~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g 366 (408)
.....+-. .++..-++ ......+++ -.+....+.+...+++.+..|.-+++-|.++.+.+.-+.+.|
T Consensus 279 mgfgkffg--keaimdvs--------eeaiceali--iaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTg 345 (524)
T KOG4413|consen 279 MGFGKFFG--KEAIMDVS--------EEAICEALI--IAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTG 345 (524)
T ss_pred HHHHHHhc--chHHhhcC--------HHHHHHHHH--HHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccC
Confidence 33333321 11110000 000111111 133444556677899999999999999999887765555544
No 84
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.19 E-value=0.0049 Score=56.84 Aligned_cols=186 Identities=15% Similarity=0.108 Sum_probs=108.0
Q ss_pred cCCCHHHHHHHHHHHHHHcC-C--chhHHHHHHh--CCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcC
Q 041050 150 ESEDANVRIHAVKVVANLAA-E--EANQEKIVEA--GGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQG 224 (408)
Q Consensus 150 ~s~~~~v~~~A~~aL~nLa~-~--~~~~~~i~~~--g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g 224 (408)
++.+=+.|..|+.-|..+.. + ......+++. ..++.+...+.+ ....+...|+.++..|+..-...-+.. -..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d-~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD-LRSKVSKTACQLLSDLARQLGSHFEPY-ADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H-H---HHHHHHHHHHHHHHHHGGGGHHH-HHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhHhHHHH-HHH
Confidence 35666788888888887765 3 2333333332 234455556653 456788889999988887622222222 233
Q ss_pred cHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHH
Q 041050 225 GISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQV 304 (408)
Q Consensus 225 ~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~ 304 (408)
.+|.|+..+ .+....++..+..+|..++.+-.....+ .+..+...+.++++.++..++..+..+....+..
T Consensus 95 ~l~~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~---- 165 (228)
T PF12348_consen 95 LLPPLLKKL-GDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSD---- 165 (228)
T ss_dssp HHHHHHHGG-G---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHH-ccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccch----
Confidence 578888887 4455688999999999998543311111 1344666778999999999998888887511100
Q ss_pred HhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 305 RFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 305 ~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
.+.......-..+++.+...+.+.+++||..|-.+++.+...
T Consensus 166 ---------~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 166 ---------SSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp ----------GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred ---------HhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 011111111134778889999999999999999999999776
No 85
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.17 E-value=0.018 Score=62.36 Aligned_cols=180 Identities=16% Similarity=0.114 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHH-HhccCChhhHHHHHhcCcHHHHHHHhh
Q 041050 157 RIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIA-NLAMNAEANQELIMAQGGISLLSTTAA 234 (408)
Q Consensus 157 ~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~-nLa~~~~~~~~~i~~~g~i~~Lv~lL~ 234 (408)
|..|+..|+..-. ++=.-.--..-|..|-.++||.+ .-.+++..-+.+=+ -|+.+ +..|..+++.+|-...+..|.
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS-~a~ELrpiLVFIWAKILAvD-~SCQ~dLvKe~g~~YF~~vL~ 564 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQS-SARELRPILVFIWAKILAVD-PSCQADLVKENGYKYFLQVLD 564 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhcc-chHhhhhhHHHHHHHHHhcC-chhHHHHHhccCceeEEEEec
Confidence 4445555554433 33333333445668999999995 44556554333333 46777 999999999999888887775
Q ss_pred c--CCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCC-CHHHHHHHHHHHHHhhccchhhhhHHHhhhhh
Q 041050 235 D--AEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCG-HPDVLSQVARGIANFAKCESRAATQVRFIRCT 310 (408)
Q Consensus 235 ~--~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~-~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~ 310 (408)
. .-+++=+.+++-+|+-++ +.+-.|....+.+.+..=+..|.++ ++-++.-+|-+|+.|=.
T Consensus 565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~--------------- 629 (1387)
T KOG1517|consen 565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWE--------------- 629 (1387)
T ss_pred CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---------------
Confidence 4 224578889999999999 6677788888888888777888764 78888889999998875
Q ss_pred ccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 311 ATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 311 ~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
.++..|=.-+++++...|..++..+-++||..|+.||+++-.+
T Consensus 630 --d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 630 --DYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred --hcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 3444444446778999999999999999999999999998875
No 86
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.051 Score=57.53 Aligned_cols=138 Identities=17% Similarity=0.163 Sum_probs=91.0
Q ss_pred hcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHH
Q 041050 149 LESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISL 228 (408)
Q Consensus 149 L~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~ 228 (408)
|++.+.-+.-.|+.+|++++..+-.++ ..|.+-.++. +.++-+|+.|+-+...+-.-.|+.-+.+ ++.
T Consensus 116 L~s~nq~vVglAL~alg~i~s~Emard------lapeVe~Ll~-~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~ 183 (866)
T KOG1062|consen 116 LNSSNQYVVGLALCALGNICSPEMARD------LAPEVERLLQ-HRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIA 183 (866)
T ss_pred ccCCCeeehHHHHHHhhccCCHHHhHH------hhHHHHHHHh-CCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHH
Confidence 456777788889999999887433332 3677777888 4789999999888877776646665555 334
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhc----C-----------CCHHHHHHHHHHHHH
Q 041050 229 LSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVR----C-----------GHPDVLSQVARGIAN 292 (408)
Q Consensus 229 Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~----~-----------~~~~v~~~a~~aL~n 292 (408)
-..+| .+.+.+|....+..+..+| .+++.-..+.+ .++-++..|+ . +||-++-...+.|+-
T Consensus 184 ~~~lL-~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLri 260 (866)
T KOG1062|consen 184 FRKLL-CEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRI 260 (866)
T ss_pred HHHHH-hhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHH
Confidence 44555 3456678777888888888 55555555544 3344444432 1 367777777887777
Q ss_pred hhccchhhh
Q 041050 293 FAKCESRAA 301 (408)
Q Consensus 293 L~~~~~~~~ 301 (408)
|...+.++.
T Consensus 261 LGq~d~daS 269 (866)
T KOG1062|consen 261 LGQNDADAS 269 (866)
T ss_pred hcCCCccHH
Confidence 776554443
No 87
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.10 E-value=0.069 Score=53.18 Aligned_cols=223 Identities=17% Similarity=0.143 Sum_probs=140.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCC-CCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSF-EDETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~-~~~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
.+.+..++-+++.++|..+.+++..+..++..-..+.+.+.---++.-|..+ ....=|.+|...+..+... +...+.
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~-~~~~~~- 104 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEI-KKGPKE- 104 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHh-cCCccc-
Confidence 3444444445559999999999999999888888888876544444445432 3455677899888877665 333322
Q ss_pred HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchh
Q 041050 221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESR 299 (408)
Q Consensus 221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~ 299 (408)
+-.|.+..++.+. +.++...+..+..+|+-++ .||+. +...||++.|.+.+-.+..++...++.++..+-
T Consensus 105 ~~~~vvralvaia-e~~~D~lr~~cletL~El~l~~P~l---v~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL----- 175 (371)
T PF14664_consen 105 IPRGVVRALVAIA-EHEDDRLRRICLETLCELALLNPEL---VAECGGIRVLLRALIDGSFSISESLLDTLLYLL----- 175 (371)
T ss_pred CCHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHhhCHHH---HHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh-----
Confidence 2456677888887 4566689999999999999 77654 667899999999887666667777888888887
Q ss_pred hhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhc-c------CCCH--HHHHHHHHHHHHHccCchhHHHHH--hCCcH
Q 041050 300 AATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNA-N------NEAA--PIRRHIELALCHLAQHEVNAREMI--SGGAL 368 (408)
Q Consensus 300 ~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL-~------~~~~--~v~~~a~~aL~~La~~~~~~~~l~--~~g~i 368 (408)
.+|..|.-+...--+..+..-. . .++. +.-..+..++..+-..=+..-.+. +..++
T Consensus 176 -------------d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~l 242 (371)
T PF14664_consen 176 -------------DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGL 242 (371)
T ss_pred -------------CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHH
Confidence 3444444343322233222211 1 1222 234445555555444322222222 23577
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 041050 369 WELVRISRDCSREDIRSLAHR 389 (408)
Q Consensus 369 ~~L~~ll~~~~~~~~~~~A~~ 389 (408)
..|+..+..++.+ ++.....
T Consensus 243 ksLv~~L~~p~~~-ir~~Ild 262 (371)
T PF14664_consen 243 KSLVDSLRLPNPE-IRKAILD 262 (371)
T ss_pred HHHHHHHcCCCHH-HHHHHHH
Confidence 7888888765544 4444443
No 88
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.03 E-value=0.01 Score=60.62 Aligned_cols=135 Identities=15% Similarity=0.155 Sum_probs=105.9
Q ss_pred HHHHHHHcCCchhHHHHHHhCCHHHHHHHH---------cCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHH
Q 041050 161 VKVVANLAAEEANQEKIVEAGGLSSLLMLL---------RSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLST 231 (408)
Q Consensus 161 ~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL---------~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~ 231 (408)
+.+|.-++.++.+.+.+....++..|+.+- ....+..+...|+.+|+|+...++..|..+++.|+.+.++.
T Consensus 2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~ 81 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE 81 (446)
T ss_pred HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence 456677777888888888888888888876 43467889999999999999999999999999999999999
Q ss_pred HhhcC----CCHHHHHHHHHHHHHHh-CCchhHHHHHh-cccHHHHHHhhc----C-------------CCHHHHHHHHH
Q 041050 232 TAADA----EDPQTLRMVAGAIANLC-GNDKLQMKLRS-EGGIRALLGMVR----C-------------GHPDVLSQVAR 288 (408)
Q Consensus 232 lL~~~----~~~~v~~~a~~aL~nL~-~~~~~~~~i~~-~g~l~~L~~lL~----~-------------~~~~v~~~a~~ 288 (408)
.|... .+.++.-...+.+.-++ .++..+..+++ .+++..|...+. . .+.....+++.
T Consensus 82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLK 161 (446)
T PF10165_consen 82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILK 161 (446)
T ss_pred HHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHH
Confidence 99654 25678888888888887 66777777765 477777776442 1 13345677889
Q ss_pred HHHHhhc
Q 041050 289 GIANFAK 295 (408)
Q Consensus 289 aL~nL~~ 295 (408)
++.|++.
T Consensus 162 llFNit~ 168 (446)
T PF10165_consen 162 LLFNITL 168 (446)
T ss_pred HHHHhhh
Confidence 9999985
No 89
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.027 Score=58.86 Aligned_cols=185 Identities=12% Similarity=0.109 Sum_probs=105.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH-
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL- 219 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~- 219 (408)
-+-++.+|++.-+-+|..|+.+|..+.. .|+.- ...+|.|..-|. ++|+.|+-+|+.+++.||.-+|.+.-.
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLe-DpDp~V~SAAV~VICELArKnPknyL~L 219 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLE-DPDPSVVSAAVSVICELARKNPQNYLQL 219 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhcc-CCCchHHHHHHHHHHHHHhhCCcccccc
Confidence 4566777788888888888888777665 44322 114677777777 467778888888888887765554321
Q ss_pred -------HH-------------------------hcCcHHHHHHHhhcCCCHHHHHHHHHHHH--HHh-CCchhHHHHHh
Q 041050 220 -------IM-------------------------AQGGISLLSTTAADAEDPQTLRMVAGAIA--NLC-GNDKLQMKLRS 264 (408)
Q Consensus 220 -------i~-------------------------~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~--nL~-~~~~~~~~i~~ 264 (408)
++ ....+++|.+++.++.-..+.-.++.++. |++ +.+.+...+.
T Consensus 220 AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq- 298 (877)
T KOG1059|consen 220 APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ- 298 (877)
T ss_pred cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH-
Confidence 11 11123444444433222233333332222 222 2112211111
Q ss_pred cccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHH
Q 041050 265 EGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRH 344 (408)
Q Consensus 265 ~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~ 344 (408)
=++..|-.++.++|+.++.-.+-|++-+.. .|+...++..+ .++++|...+..+|..
T Consensus 299 -LCvqKLr~fiedsDqNLKYlgLlam~KI~k-----------------tHp~~Vqa~kd-----lIlrcL~DkD~SIRlr 355 (877)
T KOG1059|consen 299 -LCVQKLRIFIEDSDQNLKYLGLLAMSKILK-----------------THPKAVQAHKD-----LILRCLDDKDESIRLR 355 (877)
T ss_pred -HHHHHHhhhhhcCCccHHHHHHHHHHHHhh-----------------hCHHHHHHhHH-----HHHHHhccCCchhHHH
Confidence 134445555667777777777777777775 45554433332 5677777778888888
Q ss_pred HHHHHHHHccCc
Q 041050 345 IELALCHLAQHE 356 (408)
Q Consensus 345 a~~aL~~La~~~ 356 (408)
|.-.|.-+....
T Consensus 356 ALdLl~gmVskk 367 (877)
T KOG1059|consen 356 ALDLLYGMVSKK 367 (877)
T ss_pred HHHHHHHHhhhh
Confidence 887777776543
No 90
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.86 E-value=0.014 Score=61.67 Aligned_cols=232 Identities=15% Similarity=0.095 Sum_probs=160.3
Q ss_pred hhhhcC-CCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHH-HHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHH
Q 041050 122 FRDSGN-GQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVA-NLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIR 199 (408)
Q Consensus 122 ~l~~ls-~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~-nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~ 199 (408)
..+.+. +........+..||...|+.+.....+..+..+..+|. .+.+. ..+. ...++++.+++.++....--
T Consensus 485 ~~E~~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~-~~~~----~~v~~~~~s~~~~d~~~~en 559 (748)
T KOG4151|consen 485 KNEYLAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFP-GERS----YEVVKPLDSALHNDEKGLEN 559 (748)
T ss_pred HHHHHhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC-CCch----hhhhhhhcchhhhhHHHHHH
Confidence 334442 34555567889999999999999888899999999998 44431 1111 22466677777642222222
Q ss_pred HHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHH-HHHh-cccHHHHHHhhcC
Q 041050 200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQM-KLRS-EGGIRALLGMVRC 277 (408)
Q Consensus 200 ~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~-~i~~-~g~l~~L~~lL~~ 277 (408)
-.++.++.||+..++..++.|...-+++.+-.++ ..+++..++.++..+.||...+..-. .+.+ ..+++.....+..
T Consensus 560 ~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~-~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~ 638 (748)
T KOG4151|consen 560 FEALEALTNLASISESDRQKILKEKALGKIEELM-TEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEV 638 (748)
T ss_pred HHHHHHhhcccCcchhhHHHHHHHhcchhhHHHh-hcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHh
Confidence 2388899999998888888899888888876665 46788999999999999997766554 4445 4566666666666
Q ss_pred CCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHH-HHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC-
Q 041050 278 GHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRS-LLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH- 355 (408)
Q Consensus 278 ~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~-~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~- 355 (408)
.+......+++++..++. -+..++. ...-..+...++..+.++++.++......+.|+...
T Consensus 639 ~~E~~~lA~a~a~a~I~s-----------------v~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~ 701 (748)
T KOG4151|consen 639 ADEKFELAGAGALAAITS-----------------VVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEAL 701 (748)
T ss_pred hhhHHhhhccccccchhh-----------------cchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHH
Confidence 666677777788886664 2333333 333446777889999999999999988888885544
Q ss_pred chhHHHHHhCCcHHHHHHHHh
Q 041050 356 EVNAREMISGGALWELVRISR 376 (408)
Q Consensus 356 ~~~~~~l~~~g~i~~L~~ll~ 376 (408)
.+-+..+.+...++.+..+-.
T Consensus 702 ~ei~~~~~~~~~~~~l~~~~~ 722 (748)
T KOG4151|consen 702 FEIAEKIFETEVMELLSGLQK 722 (748)
T ss_pred HHHHHHhccchHHHHHHHHHH
Confidence 444555666666666655444
No 91
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=96.76 E-value=0.084 Score=52.57 Aligned_cols=184 Identities=12% Similarity=0.062 Sum_probs=130.7
Q ss_pred CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcC-CCHHHHHHHHHH
Q 041050 170 EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADA-EDPQTLRMVAGA 248 (408)
Q Consensus 170 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~v~~~a~~a 248 (408)
.+..+..+.-..-.+.+..++-+ ++..+|..+..++..+..+ +..-..+.+.+.--.++.-|... ....=+.+|...
T Consensus 14 ~p~l~~~~~~~~~~~~i~~~lL~-~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkl 91 (371)
T PF14664_consen 14 HPTLKYDLVLSFFGERIQCMLLS-DSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKL 91 (371)
T ss_pred CchhhhhhhHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHH
Confidence 44444444333334555544442 3589999999999999999 88888888887555555555433 333346688888
Q ss_pred HHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHH
Q 041050 249 IANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALP 328 (408)
Q Consensus 249 L~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~ 328 (408)
+..+..-+..... +..|.++.|+....+++...+..|..+|+.++. .+|+ .+...|++.
T Consensus 92 iR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l-----------------~~P~---lv~~~gG~~ 150 (371)
T PF14664_consen 92 IRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELAL-----------------LNPE---LVAECGGIR 150 (371)
T ss_pred HHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHh-----------------hCHH---HHHHcCCHH
Confidence 8877633222222 356788999999988888999999999999996 4444 466889999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHh
Q 041050 329 WIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISR 376 (408)
Q Consensus 329 ~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~ 376 (408)
.|.+.+-.+..++....+.++.++-..+..++.+...--++.+..-..
T Consensus 151 ~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apft 198 (371)
T PF14664_consen 151 VLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFT 198 (371)
T ss_pred HHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhh
Confidence 999988877777888999999999999888877765444555555443
No 92
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.015 Score=59.14 Aligned_cols=226 Identities=14% Similarity=0.107 Sum_probs=133.1
Q ss_pred HHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh
Q 041050 137 FEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN 216 (408)
Q Consensus 137 ~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~ 216 (408)
.-++.+++++..++..+..+|..||..|.|++.-........-......|..+.. +.+..++. ++..+-.+-.+
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsa-Dsd~~V~~-~aeLLdRLikd---- 154 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSA-DSDQNVRG-GAELLDRLIKD---- 154 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhc-CCcccccc-HHHHHHHHHHH----
Confidence 3445689999999999999999999999999762211111111112344445554 34555555 44444333222
Q ss_pred HHHHHh----cCcHHHHHHHhh---cCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHH
Q 041050 217 QELIMA----QGGISLLSTTAA---DAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARG 289 (408)
Q Consensus 217 ~~~i~~----~g~i~~Lv~lL~---~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~a 289 (408)
|+- +=-++.++.+|+ ...+|.++...+.-|.-|-.-|.....=.-...++-|..+|..++++|+..+-.+
T Consensus 155 ---IVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~ 231 (675)
T KOG0212|consen 155 ---IVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTL 231 (675)
T ss_pred ---hccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 221 113444555543 3357788887777777665444332211123456678888999999999888888
Q ss_pred HHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHH
Q 041050 290 IANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALW 369 (408)
Q Consensus 290 L~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~ 369 (408)
+.++-.. |- ..|.. +--...++.++..+.+.++.++.-|..-|..+..-....--..-+|.+.
T Consensus 232 l~~fL~e-----------I~---s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~ 294 (675)
T KOG0212|consen 232 LSEFLAE-----------IR---SSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILT 294 (675)
T ss_pred HHHHHHH-----------Hh---cCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhh
Confidence 8887640 00 11211 1223577888889999999998888776666665443333333555566
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 041050 370 ELVRISRDCSREDIRSLAH 388 (408)
Q Consensus 370 ~L~~ll~~~~~~~~~~~A~ 388 (408)
.+...+.+.....++.+|.
T Consensus 295 ~iLpc~s~~e~~~i~~~a~ 313 (675)
T KOG0212|consen 295 AILPCLSDTEEMSIKEYAQ 313 (675)
T ss_pred hcccCCCCCccccHHHHHH
Confidence 6666555443334554444
No 93
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.70 E-value=0.02 Score=51.47 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHHHHHcCCchhHHHHHHh----------------CCHHHHHHHHcC-----CCCHHHHHHHHHHHHHhc
Q 041050 152 EDANVRIHAVKVVANLAAEEANQEKIVEA----------------GGLSSLLMLLRS-----FEDETIRRVAAGAIANLA 210 (408)
Q Consensus 152 ~~~~v~~~A~~aL~nLa~~~~~~~~i~~~----------------g~i~~L~~lL~~-----~~~~~v~~~A~~aL~nLa 210 (408)
+....-..++++|.||+..+.....++.. ..+..|+.++.. .+...-..+.+.+++|++
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 34445567889999999877776655432 236788887754 123445666889999999
Q ss_pred cCChhhHHHHHhcC--c--HHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcc
Q 041050 211 MNAEANQELIMAQG--G--ISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEG 266 (408)
Q Consensus 211 ~~~~~~~~~i~~~g--~--i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g 266 (408)
.. +..|+.+.+.. . +..|+.+. ++.++.-+.-++++|.|+|-+...+..+....
T Consensus 87 ~~-~~gR~~~l~~~~~~~~l~kLl~ft-~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~ 144 (192)
T PF04063_consen 87 QL-PEGRQFFLDPQRYDGPLQKLLPFT-EHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDD 144 (192)
T ss_pred CC-HHHHHHHhCchhhhhHHHHHHHHh-ccCcHHHHHHHHHHHHHhhccHhHHHHhcCch
Confidence 99 99999998643 3 55666665 44576778899999999998888888877643
No 94
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.024 Score=58.87 Aligned_cols=148 Identities=20% Similarity=0.225 Sum_probs=103.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhH--H----HHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh
Q 041050 141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQ--E----KIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE 214 (408)
Q Consensus 141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~--~----~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~ 214 (408)
++|.|.++|.+++...++.|..+|..++.+.... . +-.+ -.+|+++...+ ++++.+|..|++.+-..-..
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~-~mipkfl~f~~-h~spkiRs~A~~cvNq~i~~-- 204 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLN-IMIPKFLQFFK-HPSPKIRSHAVGCVNQFIII-- 204 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchH-HhHHHHHHHHh-CCChhHHHHHHhhhhheeec--
Confidence 4789999999999999999999999998743221 1 1111 14899999999 46899999999998766554
Q ss_pred hhHHHHHhcC-cHHHHHHHhhcCCCHHHHHHHHHHHHHHhCC--chhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHH
Q 041050 215 ANQELIMAQG-GISLLSTTAADAEDPQTLRMVAGAIANLCGN--DKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIA 291 (408)
Q Consensus 215 ~~~~~i~~~g-~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~--~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~ 291 (408)
..+..+..-+ -+..|..+ ..+++|.|+..+|+++..|-.- +..--.+ .+.+..++...+..|..|--+||.-..
T Consensus 205 ~~qal~~~iD~Fle~lFal-anD~~~eVRk~vC~alv~Llevr~dkl~phl--~~IveyML~~tqd~dE~VALEACEFwl 281 (885)
T KOG2023|consen 205 QTQALYVHIDKFLEILFAL-ANDEDPEVRKNVCRALVFLLEVRPDKLVPHL--DNIVEYMLQRTQDVDENVALEACEFWL 281 (885)
T ss_pred CcHHHHHHHHHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHhcHHhcccch--HHHHHHHHHHccCcchhHHHHHHHHHH
Confidence 2222222211 23445555 4788999999999999988621 1111111 355666777777888889999998888
Q ss_pred Hhhc
Q 041050 292 NFAK 295 (408)
Q Consensus 292 nL~~ 295 (408)
.++.
T Consensus 282 a~ae 285 (885)
T KOG2023|consen 282 ALAE 285 (885)
T ss_pred HHhc
Confidence 8874
No 95
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.0085 Score=60.62 Aligned_cols=136 Identities=8% Similarity=0.029 Sum_probs=107.6
Q ss_pred HHHHHH--HhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCC
Q 041050 202 AAGAIA--NLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCG 278 (408)
Q Consensus 202 A~~aL~--nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~ 278 (408)
++|++. .++..-...|.-+.+......|+.+|+ .++..+.-.+.+.++|+. .-...+..+.+.|.+..|++++.++
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls-~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALS-NPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhc-CccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 444444 444443445666777788889999994 455556667788899997 6778889999999999999999988
Q ss_pred CHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCCh-hhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 279 HPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVK-SGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 279 ~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~-~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
|..++++..|.+.-+.. |.. .-+-.+...-++..++.+.+.++..++..+..++.|+.++
T Consensus 486 DdaLqans~wvlrHlmy-----------------ncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~ 546 (743)
T COG5369 486 DDALQANSEWVLRHLMY-----------------NCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCD 546 (743)
T ss_pred hhhhhhcchhhhhhhhh-----------------cCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccc
Confidence 99999999999998886 222 2234556677889999999999999999999999999985
No 96
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.65 E-value=0.056 Score=46.86 Aligned_cols=118 Identities=11% Similarity=0.165 Sum_probs=93.4
Q ss_pred HHHHHhcCHHHHHHhhcCCC------HHHHHHHHHHHHHHcCCch-hHHHHHHhCCHHHHHHHHcCCC-CHHHHHHHHHH
Q 041050 134 TKLFEQVGLHKILSLLESED------ANVRIHAVKVVANLAAEEA-NQEKIVEAGGLSSLLMLLRSFE-DETIRRVAAGA 205 (408)
Q Consensus 134 ~~l~~~~~v~~Ll~lL~s~~------~~v~~~A~~aL~nLa~~~~-~~~~i~~~g~i~~L~~lL~~~~-~~~v~~~A~~a 205 (408)
.+++..+|++.|++++.++. .+...+++.++..|-.... .+ ..+...-|.+++...+... |+.+...|+..
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 46888999999999998655 4777888888888776333 44 3455556888888887544 68899999999
Q ss_pred HHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 041050 206 IANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC 253 (408)
Q Consensus 206 L~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~ 253 (408)
|-++..+++.....+.+.=-++.|+..|. ..+++++..+...+-.|.
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq-~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQ-VSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Confidence 99999997777888888778889999984 488899998888887775
No 97
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.65 E-value=0.0055 Score=50.39 Aligned_cols=70 Identities=13% Similarity=0.202 Sum_probs=60.1
Q ss_pred cHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050 225 GISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFA 294 (408)
Q Consensus 225 ~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~ 294 (408)
.+..|+.+|..+.|+.+...||.=|+.++ ..|..+..+-+.|+=..++.++.++|++|+.+|+.|+.-+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 45678899977778999999999999999 77899999988999999999999999999999999998875
No 98
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.05 Score=57.00 Aligned_cols=180 Identities=12% Similarity=0.115 Sum_probs=106.1
Q ss_pred HHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCC
Q 041050 161 VKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAED 238 (408)
Q Consensus 161 ~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 238 (408)
.-||.-|+. .++....+ -+-++.+|++ .-+-+|..|+.+++.+....|+.-.. ++|.|++-| +++|
T Consensus 127 giAL~GLS~fvTpdLARDL-----a~Dv~tLL~s-skpYvRKkAIl~lykvFLkYPeAlr~-----~FprL~EkL-eDpD 194 (877)
T KOG1059|consen 127 GLALSGLSCIVTPDLARDL-----ADDVFTLLNS-SKPYVRKKAILLLYKVFLKYPEALRP-----CFPRLVEKL-EDPD 194 (877)
T ss_pred hheecccccccCchhhHHH-----HHHHHHHHhc-CchHHHHHHHHHHHHHHHhhhHhHhh-----hHHHHHHhc-cCCC
Confidence 335555554 55555443 4567888885 56789999999999988764544432 579999998 7899
Q ss_pred HHHHHHHHHHHHHHh-CCchhHH--------HHH--hccc-HHHHHHhh---cCCCHHHHHHHHHHHHHhhccchhh---
Q 041050 239 PQTLRMVAGAIANLC-GNDKLQM--------KLR--SEGG-IRALLGMV---RCGHPDVLSQVARGIANFAKCESRA--- 300 (408)
Q Consensus 239 ~~v~~~a~~aL~nL~-~~~~~~~--------~i~--~~g~-l~~L~~lL---~~~~~~v~~~a~~aL~nL~~~~~~~--- 300 (408)
|+|+..|+.+|+-|+ .||.+.- .+. .+++ +-.++.+. ..-.|.+.+..+.-|.|+.. ...+
T Consensus 195 p~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~-sT~AmSL 273 (877)
T KOG1059|consen 195 PSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELME-STVAMSL 273 (877)
T ss_pred chHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHH-hhHHHHH
Confidence 999999999999999 8887632 222 2333 12233322 23345555555544555442 0000
Q ss_pred hhHHHhhh---hhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 301 ATQVRFIR---CTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 301 ~~~~~~~i---~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
..+-+.+| .-..|.+++-..+. =++..|--++.+.++.++.-++.++..++.-
T Consensus 274 lYECvNTVVa~s~s~g~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~kt 329 (877)
T KOG1059|consen 274 LYECVNTVVAVSMSSGMSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKT 329 (877)
T ss_pred HHHHHHHheeehhccCCCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhh
Confidence 00000110 01123222211111 1566777777778888888888888887753
No 99
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.57 E-value=0.27 Score=45.43 Aligned_cols=136 Identities=14% Similarity=0.163 Sum_probs=97.5
Q ss_pred HHHHHHHHHHcCCchhHHHHHHhCC---HHHHHHH-HcCCCCHHHHHHHHHHHHHhccCC-hhhHHHHHhcCcHHHHHHH
Q 041050 158 IHAVKVVANLAAEEANQEKIVEAGG---LSSLLML-LRSFEDETIRRVAAGAIANLAMNA-EANQELIMAQGGISLLSTT 232 (408)
Q Consensus 158 ~~A~~aL~nLa~~~~~~~~i~~~g~---i~~L~~l-L~~~~~~~v~~~A~~aL~nLa~~~-~~~~~~i~~~g~i~~Lv~l 232 (408)
.+|...|.-++..|+.+..+...-. +-+++.. ..+.+.+..|-.++++|+.|..++ ++....+..++.||..+..
T Consensus 97 cnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri 176 (293)
T KOG3036|consen 97 CNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI 176 (293)
T ss_pred HHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence 4455556667779999999988753 2222222 233346788889999999998863 4455667789999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhc-c---c----H-HHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050 233 AADAEDPQTLRMVAGAIANLCGNDKLQMKLRSE-G---G----I-RALLGMVRCGHPDVLSQVARGIANFA 294 (408)
Q Consensus 233 L~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~-g---~----l-~~L~~lL~~~~~~v~~~a~~aL~nL~ 294 (408)
+ +..++-....|..++.-+-.|+.+-..++.. . . + +++..+.+.+++.+.+++.++..+|+
T Consensus 177 m-e~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLs 246 (293)
T KOG3036|consen 177 M-ESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLS 246 (293)
T ss_pred H-hcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 8 4556677778888888888888776666542 1 1 2 33334557789999999999999998
No 100
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=96.52 E-value=0.12 Score=51.83 Aligned_cols=135 Identities=20% Similarity=0.217 Sum_probs=102.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHcCC----chhHHHHHHhCCHHHHHHHHcCC------CCHHHHHHHHHHHHHhccC
Q 041050 143 HKILSLLESEDANVRIHAVKVVANLAAE----EANQEKIVEAGGLSSLLMLLRSF------EDETIRRVAAGAIANLAMN 212 (408)
Q Consensus 143 ~~Ll~lL~s~~~~v~~~A~~aL~nLa~~----~~~~~~i~~~g~i~~L~~lL~~~------~~~~v~~~A~~aL~nLa~~ 212 (408)
..+..+++..+.+-|..|+-.+..++.+ ..++..+++.-|.+-+-.+|.+. +|.-.+..++.+|+-.|.+
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 4467777778888888888888888873 35677899999998888888542 1333455577888888888
Q ss_pred ChhhHHHHHhcCcHHHHHHHhhcCCCHH------HHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCC
Q 041050 213 AEANQELIMAQGGISLLSTTAADAEDPQ------TLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCG 278 (408)
Q Consensus 213 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~------v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~ 278 (408)
|+....=---+.||.|.+.+....|++ +...+-.+|..+++.+...+.++..|+++.+.++-.-+
T Consensus 94 -pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~ 164 (698)
T KOG2611|consen 94 -PELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELP 164 (698)
T ss_pred -hhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCC
Confidence 765432111235899999998776666 77788889999998899999999999999999877543
No 101
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.51 E-value=0.007 Score=49.80 Aligned_cols=71 Identities=21% Similarity=0.371 Sum_probs=61.6
Q ss_pred cHHHHHHhh-cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHH
Q 041050 267 GIRALLGMV-RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHI 345 (408)
Q Consensus 267 ~l~~L~~lL-~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a 345 (408)
.++.|+.+| .+.|+.+..-||.=|+.++. .+|.++..+.+.|+-..+++++.+++++|+.+|
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr-----------------~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eA 106 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVR-----------------HYPNGRNIIEKLGAKERVMELMNHEDPEVRYEA 106 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHH-----------------H-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHH-----------------HChhHHHHHHhcChHHHHHHHhcCCCHHHHHHH
Confidence 477899999 56788999999999999997 689999999999999999999999999999999
Q ss_pred HHHHHHHcc
Q 041050 346 ELALCHLAQ 354 (408)
Q Consensus 346 ~~aL~~La~ 354 (408)
..++..+..
T Consensus 107 L~avQklm~ 115 (119)
T PF11698_consen 107 LLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987643
No 102
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.50 E-value=0.051 Score=50.92 Aligned_cols=99 Identities=13% Similarity=0.145 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHh
Q 041050 155 NVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTA 233 (408)
Q Consensus 155 ~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL 233 (408)
.....|+++|.-++- +|..+..+....++..|+.+|....++.++..++.+|..+..+++.|...+-+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 345668888888877 9999999999999999999997667889999999999988888899999999999999999998
Q ss_pred hc-CCCHHHHHHHHHHHHHHh
Q 041050 234 AD-AEDPQTLRMVAGAIANLC 253 (408)
Q Consensus 234 ~~-~~~~~v~~~a~~aL~nL~ 253 (408)
++ +.+..++..++..|.-..
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred ccccccHHHhHHHHHHHHHHH
Confidence 63 345567777777776554
No 103
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.48 E-value=0.0086 Score=61.46 Aligned_cols=207 Identities=14% Similarity=0.174 Sum_probs=124.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC--Cchh-HHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA--EEAN-QEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE 218 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~~-~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~ 218 (408)
|..++.+|++..+++|.+|+...+.|+- ..-. ...+...|. .|..-|. .+.+++....++|++.+... ...+.
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lg-e~ypEvLgsil~Ai~~I~sv-~~~~~ 681 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLG-EDYPEVLGSILKAICSIYSV-HRFRS 681 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcC-cccHHHHHHHHHHHHHHhhh-hcccc
Confidence 5566788999999999999999998864 1101 111112221 1334444 46788888888888877654 33322
Q ss_pred HH-HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchh----HHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 041050 219 LI-MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKL----QMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANF 293 (408)
Q Consensus 219 ~i-~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~----~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL 293 (408)
+- --.|.+|.|..+| ++.+..+..+....+..+|.+..- ++-+ ...=-|+.+|++-+.+++++|..++..+
T Consensus 682 mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 682 MQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWNKEIRRNATETFGCI 757 (975)
T ss_pred cCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence 11 1245678888898 567788999999999999844322 2211 1122288889999999999999888888
Q ss_pred hcc-chhh-hhHHH---------hhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc
Q 041050 294 AKC-ESRA-ATQVR---------FIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE 356 (408)
Q Consensus 294 ~~~-~~~~-~~~~~---------~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 356 (408)
+.. ++.. ...+. ..+|+..+..-.-..-.-..++|.|+.=-..++..|+.-+..+++.+=...
T Consensus 758 s~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyi 831 (975)
T COG5181 758 SRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYI 831 (975)
T ss_pred HhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHH
Confidence 751 1111 00000 012321111111111112345666666666678888888888888877663
No 104
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.47 E-value=0.11 Score=45.07 Aligned_cols=122 Identities=11% Similarity=0.137 Sum_probs=88.7
Q ss_pred HHHHHhcCcHHHHHHHhhcCCC-----HHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcC--CCHHHHHHHHHH
Q 041050 217 QELIMAQGGISLLSTTAADAED-----PQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRC--GHPDVLSQVARG 289 (408)
Q Consensus 217 ~~~i~~~g~i~~Lv~lL~~~~~-----~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~--~~~~v~~~a~~a 289 (408)
...+...||++.|+.++.++.+ ..+...++.++..|.......=...+...++.++..... .|+.+...+...
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 4567888999999999976664 467778888888876322211134445567778877743 368899999999
Q ss_pred HHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 290 IANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 290 L~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
|-++.. .++..-..+.+.=-++.|+.+++..+++++.++...+..|-..
T Consensus 84 LEs~Vl-----------------~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 84 LESIVL-----------------NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLK 132 (160)
T ss_pred HHHHHh-----------------CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 999985 3444444444544589999999999999999999888877655
No 105
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.46 E-value=0.025 Score=59.39 Aligned_cols=180 Identities=16% Similarity=0.166 Sum_probs=113.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050 143 HKILSLLESEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 143 ~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
..++..|++..+.+|.+|+..+..|+- ..-.-.++...-|+ .|..-|. .+.+++.-..++||+.+... ..--++.
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv-vLyEylg-eeypEvLgsILgAikaI~nv-igm~km~ 878 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV-VLYEYLG-EEYPEVLGSILGAIKAIVNV-IGMTKMT 878 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH-HHHHhcC-cccHHHHHHHHHHHHHHHHh-ccccccC
Confidence 445577889999999999999998875 22222233322121 3455566 46788888777776665443 1100010
Q ss_pred -HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-ch---hHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 221 -MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGN-DK---LQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 221 -~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~-~~---~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
--.|.+|.|..+| ++.+..++.+....+..+|.+ ++ .|+-+ ...=-|+.+|++.+..+++.|..++..++.
T Consensus 879 pPi~dllPrltPIL-knrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 879 PPIKDLLPRLTPIL-KNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred CChhhhcccchHhh-hhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 0134578888888 568889999999999999933 22 22221 112228889999999999999999999886
Q ss_pred cchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHc
Q 041050 296 CESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLA 353 (408)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La 353 (408)
++.-..++..|+..|+..+...|.+...++.-.+
T Consensus 955 ------------------------aIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVa 988 (1172)
T KOG0213|consen 955 ------------------------AIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVA 988 (1172)
T ss_pred ------------------------hcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhh
Confidence 2223345666667776665555555444444433
No 106
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.088 Score=50.53 Aligned_cols=173 Identities=20% Similarity=0.219 Sum_probs=129.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHcC-Cchh----HHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhH
Q 041050 143 HKILSLLESEDANVRIHAVKVVANLAA-EEAN----QEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQ 217 (408)
Q Consensus 143 ~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~----~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~ 217 (408)
|.|-.-|..++..++..++..++-+.. .+.| ..-++..|.++.++..+. .+|..+.+.|...|..++.. +..-
T Consensus 85 pdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg-geddeVAkAAiesikrialf-paal 162 (524)
T KOG4413|consen 85 PDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG-GEDDEVAKAAIESIKRIALF-PAAL 162 (524)
T ss_pred HHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc-CCcHHHHHHHHHHHHHHHhc-HHHH
Confidence 334445667889999999999888876 3322 234457777899999998 46889999999999999999 9999
Q ss_pred HHHHhcCcHHH--HHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhc-CCCHHHHHHHHHHHHHh
Q 041050 218 ELIMAQGGISL--LSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVR-CGHPDVLSQVARGIANF 293 (408)
Q Consensus 218 ~~i~~~g~i~~--Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~-~~~~~v~~~a~~aL~nL 293 (408)
+.|++..-... +.++..++.+ -++..+...|..+. -++..-......|.+..|..=++ ..|.-|+..|......|
T Consensus 163 eaiFeSellDdlhlrnlaakcnd-iaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKCND-IARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHhcccccCChHHHhHHHhhhhh-HHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 99998776653 4555555555 45666777777776 66777677777888888777775 57888899999999998
Q ss_pred hccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC
Q 041050 294 AKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN 336 (408)
Q Consensus 294 ~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~ 336 (408)
+. ...+++-+.+.|++..++..+..
T Consensus 242 ae------------------teHgreflaQeglIdlicnIIsG 266 (524)
T KOG4413|consen 242 AE------------------TEHGREFLAQEGLIDLICNIISG 266 (524)
T ss_pred HH------------------HhhhhhhcchhhHHHHHHHHhhC
Confidence 84 55666666777888888777753
No 107
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.26 E-value=0.061 Score=49.49 Aligned_cols=145 Identities=18% Similarity=0.209 Sum_probs=91.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL 219 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 219 (408)
++.+...+++....+...|+.++..++. ..... ..++ ..+|.|+..+.+ ....++..|..+|..+....+.....
T Consensus 55 ~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~-~~~~-~~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~~~~~~ 131 (228)
T PF12348_consen 55 LDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFE-PYAD-ILLPPLLKKLGD-SKKFIREAANNALDAIIESCSYSPKI 131 (228)
T ss_dssp -HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGH-HHHH-HHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH-HHHH-HHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCCcHHHH
Confidence 4566677777888899999999999887 33322 2222 258999999984 56788999999999998873311111
Q ss_pred HHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCch-hHHHHHh----cccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050 220 IMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDK-LQMKLRS----EGGIRALLGMVRCGHPDVLSQVARGIANFA 294 (408)
Q Consensus 220 i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~-~~~~i~~----~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~ 294 (408)
+ ++.+... ..+.+|.++..++..+..+...-. ....+.. ...++.+...+.+++++|+..|-.++..+.
T Consensus 132 ~-----~~~l~~~-~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 132 L-----LEILSQG-LKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp H-----HHHHHHH-TT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHH-HhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 1 2333344 467889999999999998872222 1111111 346777888889999999999999999997
Q ss_pred c
Q 041050 295 K 295 (408)
Q Consensus 295 ~ 295 (408)
.
T Consensus 206 ~ 206 (228)
T PF12348_consen 206 S 206 (228)
T ss_dssp H
T ss_pred H
Confidence 6
No 108
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=96.23 E-value=0.026 Score=42.32 Aligned_cols=68 Identities=10% Similarity=0.003 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhccc
Q 041050 199 RRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGG 267 (408)
Q Consensus 199 ~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~ 267 (408)
.+.|+|+++|++.. +.....+.+.+.++.++++..+++...+|-.+..+|.-++.+.+..+.+.+.|.
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence 56799999999998 999999999999999999998889999999999999999999999998888775
No 109
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.13 E-value=0.4 Score=51.51 Aligned_cols=168 Identities=14% Similarity=0.142 Sum_probs=101.8
Q ss_pred hcCCCHHHHHHHHH-HHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHH
Q 041050 149 LESEDANVRIHAVK-VVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGIS 227 (408)
Q Consensus 149 L~s~~~~v~~~A~~-aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~ 227 (408)
+.+.+...|..|++ +++.++.+++... -.+.+++... +.|.++++..--=|-+.+..+| ...+. ++.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dmss------Lf~dViK~~~-trd~ElKrL~ylYl~~yak~~P--~~~lL---avN 95 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMSS------LFPDVIKNVA-TRDVELKRLLYLYLERYAKLKP--ELALL---AVN 95 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChHH------HHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCH--HHHHH---HHH
Confidence 55555655655554 4456655444211 2455555555 4677777766655666666633 22221 233
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhh
Q 041050 228 LLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFI 307 (408)
Q Consensus 228 ~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~ 307 (408)
.+..=+ .+++|.+|-.|++++.-|-. ++ +. ...++++.+.+.++++.|++.|+-|+.++=.
T Consensus 96 ti~kDl-~d~N~~iR~~AlR~ls~l~~-~e----l~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~------------ 156 (757)
T COG5096 96 TIQKDL-QDPNEEIRGFALRTLSLLRV-KE----LL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYR------------ 156 (757)
T ss_pred HHHhhc-cCCCHHHHHHHHHHHHhcCh-HH----HH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHh------------
Confidence 344443 55777888877777766521 11 11 2346667778888888888888888888753
Q ss_pred hhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 308 RCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 308 i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
-++ +.+-+.|.+..+..++...+|.+..+|..+|..+...
T Consensus 157 -----ld~---~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 157 -----LDK---DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred -----cCH---hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 122 2344567777777788888888888888888777654
No 110
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.05 E-value=0.65 Score=48.11 Aligned_cols=191 Identities=17% Similarity=0.142 Sum_probs=116.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
+|.++.-+.+....+|..|..+...+.. -+....+. .+|.++.-+... .=....+++..+..++.. ...+-..
T Consensus 218 lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~----llpsll~~l~~~-kWrtK~aslellg~m~~~-ap~qLs~ 291 (569)
T KOG1242|consen 218 LPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL----LLPSLLGSLLEA-KWRTKMASLELLGAMADC-APKQLSL 291 (569)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH----hhhhhHHHHHHH-hhhhHHHHHHHHHHHHHh-chHHHHH
Confidence 3444455556778888888777766543 22111111 134444444321 224566688888888877 6666677
Q ss_pred HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh---CCchhHHHHHh-----------------------------cccH
Q 041050 221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLC---GNDKLQMKLRS-----------------------------EGGI 268 (408)
Q Consensus 221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~---~~~~~~~~i~~-----------------------------~g~l 268 (408)
.-...+|.+.+.| .+.+|.++..+..++.+++ .|++.+..+-. .-.+
T Consensus 292 ~lp~iiP~lsevl-~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psL 370 (569)
T KOG1242|consen 292 CLPDLIPVLSEVL-WDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSL 370 (569)
T ss_pred HHhHhhHHHHHHH-ccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhH
Confidence 7777899999998 5688999999999999998 44443222100 0012
Q ss_pred HHHHHhh----cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHH
Q 041050 269 RALLGMV----RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRH 344 (408)
Q Consensus 269 ~~L~~lL----~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~ 344 (408)
..++.++ ...+..+++.++-.+.|++. +..++....-+.. .++|.|-..+....|++|..
T Consensus 371 almvpiL~R~l~eRst~~kr~t~~IidNm~~---------------LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~v 434 (569)
T KOG1242|consen 371 ALMVPILKRGLAERSTSIKRKTAIIIDNMCK---------------LVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAV 434 (569)
T ss_pred HHHHHHHHHHHhhccchhhhhHHHHHHHHHH---------------hhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHH
Confidence 2233333 23355666777777777775 2223333333332 35666666666668999999
Q ss_pred HHHHHHHHccC
Q 041050 345 IELALCHLAQH 355 (408)
Q Consensus 345 a~~aL~~La~~ 355 (408)
+..+|+.+-.+
T Consensus 435 aarAL~~l~e~ 445 (569)
T KOG1242|consen 435 AARALGALLER 445 (569)
T ss_pred HHHHHHHHHHH
Confidence 99999887765
No 111
>PRK14707 hypothetical protein; Provisional
Probab=96.03 E-value=0.31 Score=56.85 Aligned_cols=227 Identities=16% Similarity=0.112 Sum_probs=146.6
Q ss_pred HHHHHHhhc--CCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHH-HhccCChhhHH
Q 041050 142 LHKILSLLE--SEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIA-NLAMNAEANQE 218 (408)
Q Consensus 142 v~~Ll~lL~--s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~-nLa~~~~~~~~ 218 (408)
+..+++.++ .++.+.+..+.....-++.++..+..+ ...+|..+++-++.=++....+.|+..|+ .|+.+ +..+.
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~~ 242 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLRN 242 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHHH
Confidence 455566665 466667666666666776777666555 45578888888865444445555666666 45555 55544
Q ss_pred HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHH-HHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 041050 219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIA-NLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCE 297 (408)
Q Consensus 219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~-nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~ 297 (408)
.+-. -++...++.|++=++..+...++.+++ .++.++..++.+--.+.-..|-.+-+-++..+...|+..|+.=..
T Consensus 243 ~~~~-q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~-- 319 (2710)
T PRK14707 243 ELKP-QELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLA-- 319 (2710)
T ss_pred hCCh-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHh--
Confidence 4444 456666777777777777777777776 566777777777655555656566677888888888877766443
Q ss_pred hhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHH-HHHccCchhHHHHHhCCcHHHHHHHHh
Q 041050 298 SRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELAL-CHLAQHEVNAREMISGGALWELVRISR 376 (408)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL-~~La~~~~~~~~l~~~g~i~~L~~ll~ 376 (408)
.+++.+..+--.++-..|-.+.+=++..+.+.|+.+| ..++.+++....+--.|.-..|-.+.+
T Consensus 320 ---------------~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsK 384 (2710)
T PRK14707 320 ---------------DDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSK 384 (2710)
T ss_pred ---------------ccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhc
Confidence 4555554444444444444444444444544444444 558888888888877788888888888
Q ss_pred cCCHHHHHHHHH
Q 041050 377 DCSREDIRSLAH 388 (408)
Q Consensus 377 ~~~~~~~~~~A~ 388 (408)
.++....+.+|.
T Consensus 385 Wp~~~~c~~aa~ 396 (2710)
T PRK14707 385 WPDTPVCAAAAS 396 (2710)
T ss_pred CCCchHHHHHHH
Confidence 887777665555
No 112
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.02 E-value=0.069 Score=42.53 Aligned_cols=90 Identities=18% Similarity=0.142 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH--hcCcHHHHHHHh
Q 041050 157 RIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM--AQGGISLLSTTA 233 (408)
Q Consensus 157 ~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~--~~g~i~~Lv~lL 233 (408)
|..++..|...+. -+......++. .+|+++..+. +++..||..|+.+|+|++.. - +..+. -...++.|..++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~-Il~pVL~~~~-D~d~rVRy~AcEaL~ni~k~-~--~~~~l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDE-ILPPVLKCFD-DQDSRVRYYACEALYNISKV-A--RGEILPYFNEIFDALCKLS 77 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHH-HHHHHHHHcC-CCcHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHH
Confidence 4556666666654 22223333333 5899999998 57899999999999999876 2 33332 234566777776
Q ss_pred hcCCCHHHHHHHHHHHHHHh
Q 041050 234 ADAEDPQTLRMVAGAIANLC 253 (408)
Q Consensus 234 ~~~~~~~v~~~a~~aL~nL~ 253 (408)
.++++.|+ .++..|-++-
T Consensus 78 -~D~d~~Vr-~~a~~Ld~ll 95 (97)
T PF12755_consen 78 -ADPDENVR-SAAELLDRLL 95 (97)
T ss_pred -cCCchhHH-HHHHHHHHHh
Confidence 56777777 5557776653
No 113
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=0.21 Score=53.05 Aligned_cols=94 Identities=17% Similarity=0.260 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHHhccCChhhHHHHHhcCcH---------------HHHHHHhhcCCCHHHHHHHHHHHHHHhCCchh
Q 041050 194 EDETIRRVAAGAIANLAMNAEANQELIMAQGGI---------------SLLSTTAADAEDPQTLRMVAGAIANLCGNDKL 258 (408)
Q Consensus 194 ~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i---------------~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~ 258 (408)
++..+|..|+.+|+..-.+.+.|.+-+ ..+++ ..++.+| +++|+.+++.|...+.-|......
T Consensus 306 ~~~~LrvlainiLgkFL~n~d~NirYv-aLn~L~r~V~~d~~avqrHr~tIleCL-~DpD~SIkrralELs~~lvn~~Nv 383 (866)
T KOG1062|consen 306 SNSGLRVLAINILGKFLLNRDNNIRYV-ALNMLLRVVQQDPTAVQRHRSTILECL-KDPDVSIKRRALELSYALVNESNV 383 (866)
T ss_pred CCchHHHHHHHHHHHHhcCCccceeee-ehhhHHhhhcCCcHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHhccccH
Confidence 366788889999987777634443222 11111 1345676 568888999999888887644444
Q ss_pred HHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 259 QMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 259 ~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
+..+.+ |+..|.+.+++.+..++..+..++.
T Consensus 384 ~~mv~e------Ll~fL~~~d~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 384 RVMVKE------LLEFLESSDEDFKADIASKIAELAE 414 (866)
T ss_pred HHHHHH------HHHHHHhccHHHHHHHHHHHHHHHH
Confidence 433333 8888877799999999999988886
No 114
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=0.42 Score=50.28 Aligned_cols=183 Identities=15% Similarity=0.160 Sum_probs=118.1
Q ss_pred HHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHH
Q 041050 166 NLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRM 244 (408)
Q Consensus 166 nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~ 244 (408)
+|+. -+.--+.+.. .+..|-++|. +....+|..|+..++.|+.. ....+.+-.. ...++..|+...|..+++.
T Consensus 315 ~l~~h~D~e~~ll~~--~~~~Lg~fls-~rE~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkterDvSirrr 388 (938)
T KOG1077|consen 315 SLAIHLDSEPELLSR--AVNQLGQFLS-HRETNIRYLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTERDVSIRRR 388 (938)
T ss_pred HHHHHcCCcHHHHHH--HHHHHHHHhh-cccccchhhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhccccchHHHHH
Confidence 4444 3333334433 3667777777 45667899899999999888 6666666665 6777888865788899999
Q ss_pred HHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhh---hhccCChhhHHHH
Q 041050 245 VAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIR---CTATGVKSGRSLL 321 (408)
Q Consensus 245 a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i---~~~~~~~~~~~~i 321 (408)
++-.|.-+|.- +|...|+++ |++.|.+-|+.+++...-=++-|+..-.....+.++.+ -+.+| .+
T Consensus 389 avDLLY~mcD~-~Nak~IV~e-----lLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriag------d~ 456 (938)
T KOG1077|consen 389 AVDLLYAMCDV-SNAKQIVAE-----LLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAG------DY 456 (938)
T ss_pred HHHHHHHHhch-hhHHHHHHH-----HHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc------cc
Confidence 99999999843 444445443 77888888999999888777777752111111111110 01111 12
Q ss_pred HhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCc
Q 041050 322 IEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGA 367 (408)
Q Consensus 322 ~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~ 367 (408)
.++++--.+++..- .+++++..|+..+...-+.+.+...|++.||
T Consensus 457 vsdeVW~RvvQiVv-Nnedlq~yaak~~fe~Lq~~a~hE~mVKvgg 501 (938)
T KOG1077|consen 457 VSDEVWYRVVQIVV-NNEDLQGYAAKRLFEYLQKPACHENMVKVGG 501 (938)
T ss_pred ccHHHHHHhheeEe-cchhhhHHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 23344445555554 3567888888888877777777777776554
No 115
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.94 E-value=0.078 Score=56.21 Aligned_cols=135 Identities=20% Similarity=0.219 Sum_probs=103.3
Q ss_pred HHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH-HHh-cCcHHHHHHHhh
Q 041050 158 IHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL-IMA-QGGISLLSTTAA 234 (408)
Q Consensus 158 ~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~-i~~-~g~i~~Lv~lL~ 234 (408)
..++.++.||++ ++..+.+|...-+++.+-.++- .+++..++.++..+.||... +..... |++ ..+.+.....+
T Consensus 560 ~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~-ee~~~lqraa~e~~~NLl~~-~~~~e~si~e~~~~l~~w~~~~- 636 (748)
T KOG4151|consen 560 FEALEALTNLASISESDRQKILKEKALGKIEELMT-EENPALQRAALESIINLLWS-PLLYERSIVEYKDRLKLWNLNL- 636 (748)
T ss_pred HHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhh-cccHHHHHHHHHHHHHHHhh-HHHHHHHhhccccCchHHHHHH-
Confidence 458889999998 7888888999888888777765 46889999999999999999 655554 555 56777655555
Q ss_pred cCCCHHHHHHHHHHHHHHh-CCchhHH-HHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 235 DAEDPQTLRMVAGAIANLC-GNDKLQM-KLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 235 ~~~~~~v~~~a~~aL~nL~-~~~~~~~-~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
...++......+++++-+. .+..... ...-..+...++.++.+++..++..-...+.|+..
T Consensus 637 e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~ 699 (748)
T KOG4151|consen 637 EVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE 699 (748)
T ss_pred HhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH
Confidence 4467778888888888676 3333333 23335688889999999999999999888888663
No 116
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.87 E-value=0.62 Score=47.99 Aligned_cols=222 Identities=11% Similarity=0.035 Sum_probs=137.9
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHH----HcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050 145 ILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLML----LRSFEDETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 145 Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~l----L~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
.+..|+++.+.....|+.+++.++.-+- -.+..|-|+.. ....++..++.++++++++.|.. ..-...+
T Consensus 99 al~aL~s~epr~~~~Aaql~aaIA~~El------p~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces-~~Pe~li 171 (858)
T COG5215 99 ALRALKSPEPRFCTMAAQLLAAIARMEL------PNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCES-EAPEDLI 171 (858)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHhhC------ccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhc-cCHHHHH
Confidence 3577788999999999999999876210 12234444443 34456788999999999999887 4445555
Q ss_pred HhcCcHH-HHH-HHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcc----cHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050 221 MAQGGIS-LLS-TTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEG----GIRALLGMVRCGHPDVLSQVARGIANFA 294 (408)
Q Consensus 221 ~~~g~i~-~Lv-~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g----~l~~L~~lL~~~~~~v~~~a~~aL~nL~ 294 (408)
-..+.+- .++ ..++..++..++-.++.+|.+=+. ..+..+..++ .++........+|.+++..|.+|+..+.
T Consensus 172 ~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~--fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim 249 (858)
T COG5215 172 QMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM--FVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIM 249 (858)
T ss_pred HHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH--HHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHH
Confidence 5554432 333 344455666788888999987221 1122222222 2334556667899999999999998887
Q ss_pred ccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHH-HHH----------
Q 041050 295 KCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAR-EMI---------- 363 (408)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~-~l~---------- 363 (408)
. -+=+...-+.+.-......+.+++.++++...++..-..+|..+.... .+.
T Consensus 250 ~-----------------LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~ 312 (858)
T COG5215 250 M-----------------LYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNH 312 (858)
T ss_pred H-----------------HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhc
Confidence 4 122222233444445566778899999999888876666665432211 111
Q ss_pred ------hCCcHHHHHHHHhcCC----HH--HHHHHHHHHHh
Q 041050 364 ------SGGALWELVRISRDCS----RE--DIRSLAHRTLS 392 (408)
Q Consensus 364 ------~~g~i~~L~~ll~~~~----~~--~~~~~A~~~L~ 392 (408)
-...+|.|.+||.... .+ +...+|..+|-
T Consensus 313 ~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLq 353 (858)
T COG5215 313 GFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQ 353 (858)
T ss_pred chHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHH
Confidence 1337889999987522 12 26667765553
No 117
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=0.066 Score=56.52 Aligned_cols=205 Identities=17% Similarity=0.165 Sum_probs=128.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM 221 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~ 221 (408)
+..++.=..++++.+|.-|++.++-+.. .++.+. ...+|...++ +.++-+|+.|+-.++++-. ...+...
T Consensus 88 vnt~~kD~~d~np~iR~lAlrtm~~l~v-----~~i~ey-~~~Pl~~~l~-d~~~yvRktaa~~vakl~~---~~~~~~~ 157 (734)
T KOG1061|consen 88 VNTFLKDCEDPNPLIRALALRTMGCLRV-----DKITEY-LCDPLLKCLK-DDDPYVRKTAAVCVAKLFD---IDPDLVE 157 (734)
T ss_pred hhhhhccCCCCCHHHHHHHhhceeeEee-----hHHHHH-HHHHHHHhcc-CCChhHHHHHHHHHHHhhc---CChhhcc
Confidence 5555555567889999988888876644 222222 4678899998 4688899888777777744 4667788
Q ss_pred hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhh
Q 041050 222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA 300 (408)
Q Consensus 222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~ 300 (408)
..|-++.|-.++. +++|.|..+|+.++..+. .++..-......-.+..++..+..-+..-+..+..++.+-...+++.
T Consensus 158 ~~gl~~~L~~ll~-D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~e 236 (734)
T KOG1061|consen 158 DSGLVDALKDLLS-DSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSRE 236 (734)
T ss_pred ccchhHHHHHHhc-CCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchh
Confidence 8899999999984 788999999999999998 33321111111122233444443333444444555555544311111
Q ss_pred hhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCC
Q 041050 301 ATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCS 379 (408)
Q Consensus 301 ~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~ 379 (408)
. ...+..+.+.+.+.+..+...+..++.++...........-....++|+.++.+.+
T Consensus 237 a----------------------~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 237 A----------------------EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES 293 (734)
T ss_pred H----------------------HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc
Confidence 1 12455677777777777777777777777766444444444445566666666544
No 118
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=0.37 Score=51.05 Aligned_cols=227 Identities=13% Similarity=0.083 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHcCCchhHHHHHHhC-CHHHHHHHHc-CCCCHHHHHHHHHHHHHhccC------ChhhHHHHHhcCc
Q 041050 154 ANVRIHAVKVVANLAAEEANQEKIVEAG-GLSSLLMLLR-SFEDETIRRVAAGAIANLAMN------AEANQELIMAQGG 225 (408)
Q Consensus 154 ~~v~~~A~~aL~nLa~~~~~~~~i~~~g-~i~~L~~lL~-~~~~~~v~~~A~~aL~nLa~~------~~~~~~~i~~~g~ 225 (408)
..+++.++.+|+-++.+-+...-.-..+ .+..+++=.. ...+..+|-.|..+|+|--.. ++..|..|++
T Consensus 144 ~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMq--- 220 (859)
T KOG1241|consen 144 SMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQ--- 220 (859)
T ss_pred hHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeee---
Confidence 3589999999999998322222221222 3555555443 335678999999999875321 1222222221
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHH
Q 041050 226 ISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQV 304 (408)
Q Consensus 226 i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~ 304 (408)
..++. ..++|..++..|..+|..|. .+-+.-...+....+..-+.-+++++++|.-++..-=++++..+-+...+.
T Consensus 221 --vvcEa-tq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~ 297 (859)
T KOG1241|consen 221 --VVCEA-TQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEY 297 (859)
T ss_pred --eeeec-ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233 36788889988888888886 333333444455566666677778888888877766666654222211111
Q ss_pred Hh---------------------------h--------------------hhhccCChhhHHHHHhcCcHHHHHHhccCC
Q 041050 305 RF---------------------------I--------------------RCTATGVKSGRSLLIEDGALPWIVQNANNE 337 (408)
Q Consensus 305 ~~---------------------------~--------------------i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~ 337 (408)
.+ . +|-..-...+.+.|+. .++|.+-+.++++
T Consensus 298 ~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~-~Vl~Fiee~i~~p 376 (859)
T KOG1241|consen 298 GEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP-HVLPFIEENIQNP 376 (859)
T ss_pred HHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh-hhHHHHHHhcCCc
Confidence 00 0 1110001111122222 3445555567778
Q ss_pred CHHHHHHHHHHHHHHccCchhH-HHHHhCCcHHHHHHHHhcCCHHHHHHHH
Q 041050 338 AAPIRRHIELALCHLAQHEVNA-REMISGGALWELVRISRDCSREDIRSLA 387 (408)
Q Consensus 338 ~~~v~~~a~~aL~~La~~~~~~-~~l~~~g~i~~L~~ll~~~~~~~~~~~A 387 (408)
+..-|..|+.+++.+-.+++.. ..-+-.++++.++++..+++-......|
T Consensus 377 dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaA 427 (859)
T KOG1241|consen 377 DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAA 427 (859)
T ss_pred chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHH
Confidence 8888888999998888774432 2233567899999988866554443333
No 119
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=95.84 E-value=1.6 Score=42.86 Aligned_cols=205 Identities=14% Similarity=0.130 Sum_probs=139.8
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhcc-CChhhHHHHHhcC--cHHHHHHHhhcC----CC--------HHHHHHHHH
Q 041050 183 LSSLLMLLRSFEDETIRRVAAGAIANLAM-NAEANQELIMAQG--GISLLSTTAADA----ED--------PQTLRMVAG 247 (408)
Q Consensus 183 i~~L~~lL~~~~~~~v~~~A~~aL~nLa~-~~~~~~~~i~~~g--~i~~Lv~lL~~~----~~--------~~v~~~a~~ 247 (408)
++.+..-|++ ....+...++..|.++.. ++......+...= ..+.+..++... .+ +++|...+.
T Consensus 58 ~k~lyr~L~~-~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSS-SKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCc-CcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 7778888885 456778889999999988 6556666655432 223444554211 11 278888888
Q ss_pred HHHHHh--CCchhHHHHHh-cccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhc
Q 041050 248 AIANLC--GNDKLQMKLRS-EGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIED 324 (408)
Q Consensus 248 aL~nL~--~~~~~~~~i~~-~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~ 324 (408)
.+..+. +++..+..+.+ .+.+..+.+-+..+++++...+..++..-...+.. =....+..+...
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~-------------v~r~~K~~~fn~ 203 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSS-------------VSRSTKCKLFNE 203 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCC-------------CChhhhhhhcCH
Confidence 887776 67777777775 45677788888888899999888888854432221 124455666777
Q ss_pred CcHHHHHHhccCCCH----HHHHHHHHHHHHHccCchhHHHHH------------------------hCCcHHHHHHHHh
Q 041050 325 GALPWIVQNANNEAA----PIRRHIELALCHLAQHEVNAREMI------------------------SGGALWELVRISR 376 (408)
Q Consensus 325 g~l~~Lv~lL~~~~~----~v~~~a~~aL~~La~~~~~~~~l~------------------------~~g~i~~L~~ll~ 376 (408)
.++..|..+...+++ .++..+-..|..+|+++.+--..- ..+.+-.++..++
T Consensus 204 ~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~~ll~~lk 283 (330)
T PF11707_consen 204 WTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPKHGVCFPDNGWYPRESDSGVPVTINNKSFKINNKLLLNLLKKLK 283 (330)
T ss_pred HHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCCcccccCCCCcCcCcccccccccccCCCCCcccHHHHHHHHHCC
Confidence 889999998877766 889999999999997754321111 1234445555555
Q ss_pred cCCHHHHHHHHHHHHhccHhhHHHH
Q 041050 377 DCSREDIRSLAHRTLSSSLTFRAEM 401 (408)
Q Consensus 377 ~~~~~~~~~~A~~~L~~~~~~~~~~ 401 (408)
..++...+.++.+++...|++.+..
T Consensus 284 p~e~~~q~~Lvl~Il~~~PeLva~Y 308 (330)
T PF11707_consen 284 PWEDDRQQELVLKILKACPELVAPY 308 (330)
T ss_pred CCccHHHHHHHHHHHHHChHHHHHH
Confidence 4455558888999999999986553
No 120
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.83 E-value=0.14 Score=46.16 Aligned_cols=119 Identities=15% Similarity=0.083 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHhc----------------ccHHHHHHhhcC------CCHHHHHHHHHHHHHhhccc
Q 041050 240 QTLRMVAGAIANLCGNDKLQMKLRSE----------------GGIRALLGMVRC------GHPDVLSQVARGIANFAKCE 297 (408)
Q Consensus 240 ~v~~~a~~aL~nL~~~~~~~~~i~~~----------------g~l~~L~~lL~~------~~~~v~~~a~~aL~nL~~~~ 297 (408)
.....++..|+||+..+.....+.+. ..+..|+..+.. +..+-....+..++|++
T Consensus 10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS--- 86 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS--- 86 (192)
T ss_pred chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc---
Confidence 45567888899999777776655432 245556666533 23445667889999998
Q ss_pred hhhhhHHHhhhhhccCChhhHHHHHhc--Cc--HHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHh---CCcHHH
Q 041050 298 SRAATQVRFIRCTATGVKSGRSLLIED--GA--LPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMIS---GGALWE 370 (408)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~i~~~--g~--l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~---~g~i~~ 370 (408)
..+.+|..+.+. +. +..|+.+..+.+..-|.-++.+|.|+|-+.+....+.. .+.++.
T Consensus 87 ---------------~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~ 151 (192)
T PF04063_consen 87 ---------------QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPY 151 (192)
T ss_pred ---------------CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHH
Confidence 589999999853 34 77888888888666667799999999999888888875 455665
Q ss_pred HHHHHh
Q 041050 371 LVRISR 376 (408)
Q Consensus 371 L~~ll~ 376 (408)
|.--+.
T Consensus 152 LLlPLa 157 (192)
T PF04063_consen 152 LLLPLA 157 (192)
T ss_pred HHhhcc
Confidence 555444
No 121
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.78 E-value=0.97 Score=44.35 Aligned_cols=194 Identities=14% Similarity=0.080 Sum_probs=138.0
Q ss_pred HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhH-----HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHH
Q 041050 175 EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQ-----ELIMAQGGISLLSTTAADAEDPQTLRMVAGAI 249 (408)
Q Consensus 175 ~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~-----~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL 249 (408)
..+...+.+..|+..|.. -+-+.++.++.+..++-......+ +-+. ...-..|..++...++|++--.+...|
T Consensus 70 ~Ei~~~dll~~Li~~L~~-L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~-~~~peil~~L~~gy~~~dial~~g~ml 147 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPK-LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLE-RHRPEILDILLRGYENPDIALNCGDML 147 (335)
T ss_dssp HHHHHHTHHHHHHHTGGG-S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHH-T--THHHHHHHHGGGSTTTHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhh-CCCcccccHHHHHHHHHhhccCCCCCchHHHHH-hCCHHHHHHHHHHhcCccccchHHHHH
Confidence 356667778888888874 577899999999888877643332 2232 222344445555556677776777777
Q ss_pred HHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcC---c
Q 041050 250 ANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDG---A 326 (408)
Q Consensus 250 ~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g---~ 326 (408)
...+..+.....+.....+..+......++.++...|..++..+-. .++.....+...+ .
T Consensus 148 Rec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt-----------------~hk~~~a~fl~~n~d~f 210 (335)
T PF08569_consen 148 RECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLT-----------------RHKKLVAEFLSNNYDRF 210 (335)
T ss_dssp HHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHH-----------------SSHHHHHHHHHHTHHHH
T ss_pred HHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHh-----------------ccHHHHHHHHHHHHHHH
Confidence 7777888888888888888889999999999999999999988664 5666666666543 4
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHH----hCCcHHHHHHHHhcCCHHHHHHHHH
Q 041050 327 LPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMI----SGGALWELVRISRDCSREDIRSLAH 388 (408)
Q Consensus 327 l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~----~~g~i~~L~~ll~~~~~~~~~~~A~ 388 (408)
......++.+++.-+++.+...|+.+-.+..+...|. +..-+..++.++++. ...++-.|-
T Consensus 211 f~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAF 275 (335)
T PF08569_consen 211 FQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAF 275 (335)
T ss_dssp HHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHH
T ss_pred HHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHH
Confidence 5678889999999999999999999999988876655 444566777888854 444555554
No 122
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.78 E-value=0.061 Score=46.84 Aligned_cols=146 Identities=21% Similarity=0.282 Sum_probs=94.9
Q ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHH
Q 041050 183 LSSLLMLLRS-FEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQM 260 (408)
Q Consensus 183 i~~L~~lL~~-~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~ 260 (408)
+..++.-|.. ..++.+|..|.-++..+- +..++.+.+. .-+.+-..+ ...+.+-...+..++..+- +.++.-.
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~-~~~~i~~~~-~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK-ISDFIESLL-DEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHH-CCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH-HHHHHHHHH-ccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 4455555553 356778888888887772 4444443321 122233333 2222335556777787776 6666655
Q ss_pred HH-HhcccHHHHHHhhc--CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhcc-C
Q 041050 261 KL-RSEGGIRALLGMVR--CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNAN-N 336 (408)
Q Consensus 261 ~i-~~~g~l~~L~~lL~--~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~-~ 336 (408)
.+ ...|.++.++.++. .++..++..++.+|..=| .+..+|..+.+ .+++||.+..+ +
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc------------------~d~~~r~~I~~-~~~~~L~~~~~~~ 140 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC------------------IDKSCRTFISK-NYVSWLKELYKNS 140 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT------------------TSHHHHHCCHH-HCHHHHHHHTTTC
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH------------------ccHHHHHHHHH-HHHHHHHHHHccc
Confidence 55 47788899999997 788889988888888766 45666555555 68899999995 4
Q ss_pred CCHH-HHHHHHHHHHHH
Q 041050 337 EAAP-IRRHIELALCHL 352 (408)
Q Consensus 337 ~~~~-v~~~a~~aL~~L 352 (408)
+++. ++..|+.+|+.+
T Consensus 141 ~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 141 KDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp C-HH-CHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHhcC
Confidence 5565 788888887753
No 123
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.63 E-value=0.57 Score=41.55 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHh
Q 041050 195 DETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGM 274 (408)
Q Consensus 195 ~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~l 274 (408)
++.+|..++-+++-|+...|..-+.. +|.+...| .+++|.+++.|+.+|.+|...+..+- +...+..++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~-----~~~l~~~L-~D~~~~VR~~al~~Ls~Li~~d~ik~---k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPY-----LPNLYKCL-RDEDPLVRKTALLVLSHLILEDMIKV---KGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhH-----HHHHHHHH-CCCCHHHHHHHHHHHHHHHHcCceee---hhhhhHHHHHH
Confidence 46889999999999988756444443 67788888 67899999999999999984432211 11123557778
Q ss_pred hcCCCHHHHHHHHHHHHHhhc
Q 041050 275 VRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 275 L~~~~~~v~~~a~~aL~nL~~ 295 (408)
+.+++++|+..|..++..+..
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLK 92 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHH
Confidence 889999999999999999985
No 124
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.52 E-value=2 Score=42.24 Aligned_cols=203 Identities=10% Similarity=0.086 Sum_probs=145.0
Q ss_pred HHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-Cchh-----HHHHHHhCCHHHHHHH-HcCCCCHHHHHHHHHHH
Q 041050 134 TKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEAN-----QEKIVEAGGLSSLLML-LRSFEDETIRRVAAGAI 206 (408)
Q Consensus 134 ~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~-----~~~i~~~g~i~~L~~l-L~~~~~~~v~~~A~~aL 206 (408)
.++...+-+..|+..|..-+-+.|..++.+..++.. .... ...+... -|.++.. +...+++++.-.+...|
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~--~peil~~L~~gy~~~dial~~g~ml 147 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH--RPEILDILLRGYENPDIALNCGDML 147 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT----THHHHHHHHGGGSTTTHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC--CHHHHHHHHHHhcCccccchHHHHH
Confidence 356666778899999999999999999999999876 3222 3333332 1333332 33223566677778888
Q ss_pred HHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcc---cHHHHHHhhcCCCHHH
Q 041050 207 ANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEG---GIRALLGMVRCGHPDV 282 (408)
Q Consensus 207 ~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g---~l~~L~~lL~~~~~~v 282 (408)
...+.+ +.....+.+...+..+.... ..+.-++..-|..++.-+- .++.........+ .+.....++.+++--+
T Consensus 148 Rec~k~-e~l~~~iL~~~~f~~ff~~~-~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt 225 (335)
T PF08569_consen 148 RECIKH-ESLAKIILYSECFWKFFKYV-QLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVT 225 (335)
T ss_dssp HHHTTS-HHHHHHHHTSGGGGGHHHHT-TSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred HHHHhh-HHHHHHHhCcHHHHHHHHHh-cCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence 888888 98888999988888899886 5677889888988888865 7777766666544 4566777889999999
Q ss_pred HHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHH----hcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchh
Q 041050 283 LSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLI----EDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVN 358 (408)
Q Consensus 283 ~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~----~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~ 358 (408)
++++...|+.|-. ++.+-..|. +..-+..++.+|++....+|.+|..++--+..++..
T Consensus 226 krqslkLL~elll------------------dr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 226 KRQSLKLLGELLL------------------DRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp HHHHHHHHHHHHH------------------SGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred ehhhHHHHHHHHH------------------chhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence 9999999999985 333333332 233567788899999999999999999998887543
No 125
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.49 E-value=0.13 Score=49.17 Aligned_cols=152 Identities=11% Similarity=0.189 Sum_probs=101.7
Q ss_pred HHHHHhhc--CCCHHHHHHHHHHHHHHcCCchhHHHHHHhC-CHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChh--hH
Q 041050 143 HKILSLLE--SEDANVRIHAVKVVANLAAEEANQEKIVEAG-GLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEA--NQ 217 (408)
Q Consensus 143 ~~Ll~lL~--s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g-~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~--~~ 217 (408)
..++..++ -++.++|.+++-.++-+++++...+.|-+.. -+..|+.+.+......|.+.+++++.|++..+|. ..
T Consensus 194 ~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~ 273 (432)
T COG5231 194 RRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIF 273 (432)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 45566665 2567899999999999999888874443322 3777788877545577888899999999873211 11
Q ss_pred HHHHhcC-------------------------------------------------------------------------
Q 041050 218 ELIMAQG------------------------------------------------------------------------- 224 (408)
Q Consensus 218 ~~i~~~g------------------------------------------------------------------------- 224 (408)
......+
T Consensus 274 ~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kd 353 (432)
T COG5231 274 SPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKD 353 (432)
T ss_pred hhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhh
Confidence 1111111
Q ss_pred ---cHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050 225 ---GISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFA 294 (408)
Q Consensus 225 ---~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~ 294 (408)
.+..|..++....+-.....|+.=|..+. ..|+.+..+...|+=..++.++.++|++|+.+|..|+..+.
T Consensus 354 ny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 354 NYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred hHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 11222333321111123334555566665 77888999999999999999999999999999999887664
No 126
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.48 E-value=1.1 Score=48.28 Aligned_cols=168 Identities=14% Similarity=0.077 Sum_probs=115.4
Q ss_pred HcCCCCHHHHHHHH-HHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccH
Q 041050 190 LRSFEDETIRRVAA-GAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGI 268 (408)
Q Consensus 190 L~~~~~~~v~~~A~-~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l 268 (408)
+.+ .++..+..|+ .+|++++.. ++-... .+-+++... +.+.++.+..---+-+.+........+ ++
T Consensus 28 l~s-~n~~~kidAmK~iIa~M~~G-~dmssL------f~dViK~~~-trd~ElKrL~ylYl~~yak~~P~~~lL----av 94 (757)
T COG5096 28 LES-SNDYKKIDAMKKIIAQMSLG-EDMSSL------FPDVIKNVA-TRDVELKRLLYLYLERYAKLKPELALL----AV 94 (757)
T ss_pred ccc-cChHHHHHHHHHHHHHHhcC-CChHHH------HHHHHHHHH-hcCHHHHHHHHHHHHHHhccCHHHHHH----HH
Confidence 543 3444455444 566788777 442222 234455554 678899988888888888333322222 34
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHH
Q 041050 269 RALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELA 348 (408)
Q Consensus 269 ~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~a 348 (408)
..+.+=+.++++.+|-.|.++++.+-. ++. . ..+++++.+++.++++-||+.|+.+
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~~-------------------~el----~-~~~~~~ik~~l~d~~ayVRk~Aala 150 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLRV-------------------KEL----L-GNIIDPIKKLLTDPHAYVRKTAALA 150 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcCh-------------------HHH----H-HHHHHHHHHHccCCcHHHHHHHHHH
Confidence 556677789999999999999998843 221 1 2467899999999999999999999
Q ss_pred HHHHccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhccHh
Q 041050 349 LCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSSSLT 396 (408)
Q Consensus 349 L~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~ 396 (408)
+.++=.-+. ....+.|.+..+..++.+.++..++++-...-..+|.
T Consensus 151 v~kly~ld~--~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 151 VAKLYRLDK--DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHhcCH--hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 999865432 3455888999999999988887777665555555554
No 127
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=95.44 E-value=0.85 Score=43.12 Aligned_cols=175 Identities=17% Similarity=0.138 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHhcCc--HHHHHHHhhc---CCCHHHHHHHHHHHHHHhCCchhHHHHHhccc--HHH
Q 041050 198 IRRVAAGAIANLAMNAEANQELIMAQGG--ISLLSTTAAD---AEDPQTLRMVAGAIANLCGNDKLQMKLRSEGG--IRA 270 (408)
Q Consensus 198 v~~~A~~aL~nLa~~~~~~~~~i~~~g~--i~~Lv~lL~~---~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~--l~~ 270 (408)
.+--++..++-+..+ +..-..+...++ ...+..++.. ...+..+..++++++|+-.++..+..+.+... +-.
T Consensus 79 ~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~ 157 (268)
T PF08324_consen 79 SRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILE 157 (268)
T ss_dssp C-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHH
T ss_pred cchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHH
Confidence 344466666666666 666555554432 3444444332 24678888999999999999999988876543 333
Q ss_pred HHHhhcCC----CHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhc-cC-CCHHHHHH
Q 041050 271 LLGMVRCG----HPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNA-NN-EAAPIRRH 344 (408)
Q Consensus 271 L~~lL~~~----~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL-~~-~~~~v~~~ 344 (408)
.+..+... ++.++..++..+.|++.--.+. ..+.+.+. .++..+++.+ .. .++++...
T Consensus 158 ~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~-----------~~~~~~~~-----~ll~~i~~~~~~~~~d~Ea~~R 221 (268)
T PF08324_consen 158 LLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKN-----------RSDEEWQS-----ELLSSIIEVLSREESDEEALYR 221 (268)
T ss_dssp HCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHC-----------TS-CCHHH-----HHHHHHHHHCHCCHTSHHHHHH
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHHHHHHhc-----------CCChHHHH-----HHHHHHHHHhccccCCHHHHHH
Confidence 33333332 6788888999999998510000 00111111 2345566633 22 58999999
Q ss_pred HHHHHHHHccCchhHHHHHh-CCcHHHHHHHHhcCCHHHHHHHHHH
Q 041050 345 IELALCHLAQHEVNAREMIS-GGALWELVRISRDCSREDIRSLAHR 389 (408)
Q Consensus 345 a~~aL~~La~~~~~~~~l~~-~g~i~~L~~ll~~~~~~~~~~~A~~ 389 (408)
++.|++++...+.......+ .|+...+........++.++..+..
T Consensus 222 ~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~e 267 (268)
T PF08324_consen 222 LLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAE 267 (268)
T ss_dssp HHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhcc
Confidence 99999999988777777775 5666666666655555556666543
No 128
>PRK14707 hypothetical protein; Provisional
Probab=95.43 E-value=0.66 Score=54.37 Aligned_cols=230 Identities=19% Similarity=0.136 Sum_probs=154.4
Q ss_pred chHHHHHHhcCHHHHHHhhc-CCCHHHHHHHHHHHH-HHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHH-
Q 041050 131 APITKLFEQVGLHKILSLLE-SEDANVRIHAVKVVA-NLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIA- 207 (408)
Q Consensus 131 ~~~~~l~~~~~v~~Ll~lL~-s~~~~v~~~A~~aL~-nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~- 207 (408)
...+.-+...+|...++.|+ =++...+..|+.+|+ .++.++..+..+ ..-.+.-.++-|+.-.+..+...|+..|+
T Consensus 238 ~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al-~~q~vanalNalSKwpd~~vc~~Aa~~la~ 316 (2710)
T PRK14707 238 SRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKAL-DPINVTQALNALSKWADLPVCAEAAIALAE 316 (2710)
T ss_pred HHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHH
Confidence 45556666667888887776 466667777777775 555555555444 33346666676765667777777777665
Q ss_pred HhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHH-HHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHH
Q 041050 208 NLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIA-NLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQV 286 (408)
Q Consensus 208 nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~-nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a 286 (408)
.|..+ +..++.+-.. ++.-.++-|++=+|..+.+.++.+|+ .++.+++.++.+--.|.-..|-.+-+=++..+.+.+
T Consensus 317 rl~~d-~~l~~~~~~~-~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~a 394 (2710)
T PRK14707 317 RLADD-PELCKALNAR-GLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAA 394 (2710)
T ss_pred HHhcc-HhhhhccchH-HHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHH
Confidence 66666 7777665444 45556677777677667666666665 677888888877655555555555577888888888
Q ss_pred HHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHH-HccCchhHHHHHhC
Q 041050 287 ARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCH-LAQHEVNAREMISG 365 (408)
Q Consensus 287 ~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~-La~~~~~~~~l~~~ 365 (408)
+.+|+.=.. ++++.+..|-..|+-..|-.+.+=++..+...++.+|.. ++.+.+..+.+--.
T Consensus 395 a~~LA~~l~-----------------~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~ 457 (2710)
T PRK14707 395 ASALAEHVV-----------------DDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPI 457 (2710)
T ss_pred HHHHHHHhc-----------------cChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChH
Confidence 888777554 788888888888887777777776777777777777755 66666666555544
Q ss_pred CcHHHHHHHHhcCCH
Q 041050 366 GALWELVRISRDCSR 380 (408)
Q Consensus 366 g~i~~L~~ll~~~~~ 380 (408)
++...|-.+.+.++.
T Consensus 458 ~va~~LnalSKWPd~ 472 (2710)
T PRK14707 458 NVTQALDALSKWPDT 472 (2710)
T ss_pred HHHHHHHHhhcCCCC
Confidence 555555555555443
No 129
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.40 E-value=0.39 Score=49.71 Aligned_cols=164 Identities=13% Similarity=0.105 Sum_probs=101.0
Q ss_pred hhhhhhcCCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHH
Q 041050 120 SQFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIR 199 (408)
Q Consensus 120 ~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~ 199 (408)
++++-.+....+..-.......+|.+.+.+...++++|..+..+|.+++.--+|-+ |-. -+|.|+..+.+ +.. -.
T Consensus 275 lellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~--~ip~Lld~l~d-p~~-~~ 349 (569)
T KOG1242|consen 275 LELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQK--IIPTLLDALAD-PSC-YT 349 (569)
T ss_pred HHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHH--HHHHHHHHhcC-ccc-ch
Confidence 45555554555555566667779999999999999999999999999987333333 211 47888888883 221 22
Q ss_pred HHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh---cCCCHHHHHHHHHHHHHHhC---CchhHHHHHhcccHHHHHH
Q 041050 200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAA---DAEDPQTLRMVAGAIANLCG---NDKLQMKLRSEGGIRALLG 273 (408)
Q Consensus 200 ~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~~v~~~a~~aL~nL~~---~~~~~~~i~~~g~l~~L~~ 273 (408)
..+...|+.=+.- ..++.-.+..++.+|. ...+..+.+.++-++.|+|. |+..-.-+.. -.+|-|-.
T Consensus 350 ~e~~~~L~~ttFV------~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~ 422 (569)
T KOG1242|consen 350 PECLDSLGATTFV------AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKE 422 (569)
T ss_pred HHHHHhhcceeee------eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHH
Confidence 3344444322221 0111122333444443 22445688999999999993 3333333221 23444444
Q ss_pred hhcCCCHHHHHHHHHHHHHhhc
Q 041050 274 MVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 274 lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
.+....|++|.-++++|+.+-.
T Consensus 423 ~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 423 NLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred HhcCCChhHHHHHHHHHHHHHH
Confidence 5556689999999999988864
No 130
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.35 E-value=0.33 Score=48.88 Aligned_cols=166 Identities=17% Similarity=0.134 Sum_probs=105.7
Q ss_pred hhhcCCCCchHHHHHHhcCHHHHHHhhcC-------CCHHHHHHHHHHHHHHcCCchhH--HHHHHhCCHHHHHHHHcCC
Q 041050 123 RDSGNGQKAPITKLFEQVGLHKILSLLES-------EDANVRIHAVKVVANLAAEEANQ--EKIVEAGGLSSLLMLLRSF 193 (408)
Q Consensus 123 l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s-------~~~~v~~~A~~aL~nLa~~~~~~--~~i~~~g~i~~L~~lL~~~ 193 (408)
.++-+....+.+.+++..|.+.+-.+|.+ ++.-.+..++.+|+-.+..|+.. ..++. .||.|+..+...
T Consensus 39 vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v~--~IP~llev~~~~ 116 (698)
T KOG2611|consen 39 VKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMVS--RIPLLLEVMSKG 116 (698)
T ss_pred hcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHHH--hhhHHHHHHHhc
Confidence 34445556677889999999888888853 33445677888888888877654 34544 499999999765
Q ss_pred CCHH------HHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHH-h-CCc---hhHHHH
Q 041050 194 EDET------IRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANL-C-GND---KLQMKL 262 (408)
Q Consensus 194 ~~~~------v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL-~-~~~---~~~~~i 262 (408)
.|++ +...+-..|+.++.. +.....++..||++.+..+- ...+-......+-.+.-+ . +-+ +.-..+
T Consensus 117 ~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y-~~~~~~~d~alal~Vlll~~~~~~cw~e~~~~f 194 (698)
T KOG2611|consen 117 IDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMY-ELPDGSHDMALALKVLLLLVSKLDCWSETIERF 194 (698)
T ss_pred CCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHH-hCCCCchhHHHHHHHHHHHHHhcccCcCCHHHH
Confidence 5544 777788999999999 99999999999999998663 333322222111111111 1 111 111111
Q ss_pred HhcccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050 263 RSEGGIRALLGMVRCGHPDVLSQVARGIANFA 294 (408)
Q Consensus 263 ~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~ 294 (408)
.. .+..+..=+...+...+.+.|..|..+-
T Consensus 195 la--li~~va~df~~~~~a~KfElc~lL~~vl 224 (698)
T KOG2611|consen 195 LA--LIAAVARDFAVLHNALKFELCHLLSAVL 224 (698)
T ss_pred HH--HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 11 1333333334556667778888887543
No 131
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.24 E-value=1.5 Score=40.71 Aligned_cols=143 Identities=13% Similarity=0.166 Sum_probs=101.4
Q ss_pred chhhhhhcCCCCchHHHHHHhcCHHHHH-Hhhc-----CCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHH
Q 041050 119 HSQFRDSGNGQKAPITKLFEQVGLHKIL-SLLE-----SEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLL 190 (408)
Q Consensus 119 ~~~~l~~ls~~~~~~~~l~~~~~v~~Ll-~lL~-----s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL 190 (408)
.+-+++-+.++.+....++... +|-.+ .+|+ .+.+.+|..++.+++.|.. +++.-..+...+.+|..+..+
T Consensus 99 aL~LlQcvASHpdTr~~FL~A~-iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrim 177 (293)
T KOG3036|consen 99 ALALLQCVASHPDTRRAFLRAH-IPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIM 177 (293)
T ss_pred HHHHHHHHhcCcchHHHHHHcc-ChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH
Confidence 3566677766666666666655 44333 4443 4678899999999999987 445666777888999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhccCChhhHHHHHhc-------C-cHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHH
Q 041050 191 RSFEDETIRRVAAGAIANLAMNAEANQELIMAQ-------G-GISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKL 262 (408)
Q Consensus 191 ~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~-------g-~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i 262 (408)
.. .++.-+..|..++-.+-.+ +..-.-+..+ + .+..++.-+.+.+++.+..+++++..+|+.|+..+..+
T Consensus 178 e~-GSelSKtvA~fIlqKIlld-D~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL 255 (293)
T KOG3036|consen 178 ES-GSELSKTVATFILQKILLD-DVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAAL 255 (293)
T ss_pred hc-ccHHHHHHHHHHHHHHhhc-cccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 85 4667777888888887777 5443322211 1 22233444457788999999999999999999998887
Q ss_pred Hh
Q 041050 263 RS 264 (408)
Q Consensus 263 ~~ 264 (408)
..
T Consensus 256 ~~ 257 (293)
T KOG3036|consen 256 RS 257 (293)
T ss_pred Hh
Confidence 64
No 132
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.11 E-value=2.4 Score=42.44 Aligned_cols=102 Identities=16% Similarity=0.288 Sum_probs=80.5
Q ss_pred HHHhCC-HHHHHHHHcCCC--CHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh-c--CCCHHHHHHHHHHHH
Q 041050 177 IVEAGG-LSSLLMLLRSFE--DETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAA-D--AEDPQTLRMVAGAIA 250 (408)
Q Consensus 177 i~~~g~-i~~L~~lL~~~~--~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~-~--~~~~~v~~~a~~aL~ 250 (408)
+++.+. +..|..++.... .+.+--.|+.++..+-.+.|..-..+.+.|.++.++..+. . .+..++....-.++.
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 444233 556666666432 4678888999999999987888888889999998888875 2 245678888899999
Q ss_pred HHhCCchhHHHHHhcccHHHHHHhhcCC
Q 041050 251 NLCGNDKLQMKLRSEGGIRALLGMVRCG 278 (408)
Q Consensus 251 nL~~~~~~~~~i~~~g~l~~L~~lL~~~ 278 (408)
.||-|....+.+.+.+.++.+++++.++
T Consensus 181 AicLN~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 181 AICLNNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHhcCHHHHHHHHhcChHHHHHHHhCCH
Confidence 9999999999999999999999988654
No 133
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.08 E-value=0.48 Score=51.40 Aligned_cols=101 Identities=14% Similarity=0.095 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCC
Q 041050 236 AEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGV 314 (408)
Q Consensus 236 ~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~ 314 (408)
+.++.++..++.+|+.|+ .+|+ ..++.|-..++++.+..+.-+..++..... .+
T Consensus 943 ~~eegtR~vvAECLGkL~l~epe--------sLlpkL~~~~~S~a~~~rs~vvsavKfsis-----------------d~ 997 (1233)
T KOG1824|consen 943 CAEEGTRNVVAECLGKLVLIEPE--------SLLPKLKLLLRSEASNTRSSVVSAVKFSIS-----------------DQ 997 (1233)
T ss_pred cchhhhHHHHHHHhhhHHhCChH--------HHHHHHHHHhcCCCcchhhhhhheeeeeec-----------------CC
Confidence 345567777778888777 3332 345667777788888887777666655443 22
Q ss_pred hhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC-chhHHHH
Q 041050 315 KSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH-EVNAREM 362 (408)
Q Consensus 315 ~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~-~~~~~~l 362 (408)
+.-...+ ....+.....++++++.+||+.|..++...+.+ +...+++
T Consensus 998 p~~id~~-lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDl 1045 (1233)
T KOG1824|consen 998 PQPIDPL-LKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDL 1045 (1233)
T ss_pred CCccCHH-HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHH
Confidence 2222222 235667888899999999999999999999988 4444443
No 134
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.07 E-value=0.26 Score=54.50 Aligned_cols=141 Identities=16% Similarity=0.135 Sum_probs=103.5
Q ss_pred HHHHHHHHcC---CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchh
Q 041050 183 LSSLLMLLRS---FEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKL 258 (408)
Q Consensus 183 i~~L~~lL~~---~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~ 258 (408)
.|-++...+. ..+|+++.+|.-+|+.+..-+...+.. -.|.|+..+..+++|.++.+++-+++.|+ .-|..
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpnl 995 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL 995 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence 4555666632 257999999999999886654444333 37899999988999999999999999998 44444
Q ss_pred HHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCC
Q 041050 259 QMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEA 338 (408)
Q Consensus 259 ~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~ 338 (408)
-+. +-+.|...|+..++.+++.|..+|+.|.. ...+.-.|.++.+..++.+++
T Consensus 996 ie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLIL----------------------ndmiKVKGql~eMA~cl~D~~ 1048 (1251)
T KOG0414|consen 996 IEP-----WTEHLYRRLRDESPSVRKTALLVLSHLIL----------------------NDMIKVKGQLSEMALCLEDPN 1048 (1251)
T ss_pred cch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHH----------------------hhhhHhcccHHHHHHHhcCCc
Confidence 333 34558889999999999999999999975 112334577777777777777
Q ss_pred HHHHHHHHHHHHHHccC
Q 041050 339 APIRRHIELALCHLAQH 355 (408)
Q Consensus 339 ~~v~~~a~~aL~~La~~ 355 (408)
..|+.-|-.....|+..
T Consensus 1049 ~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 1049 AEISDLAKSFFKELSSK 1065 (1251)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 77777777555555543
No 135
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.06 E-value=0.098 Score=54.04 Aligned_cols=148 Identities=19% Similarity=0.239 Sum_probs=95.6
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH---HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCC---c
Q 041050 183 LSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE---LIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGN---D 256 (408)
Q Consensus 183 i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~---~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~---~ 256 (408)
+..++.+|+ +.++.+|..|+...+.|+.- -.++. .+...|. .|.+-| ..++|+++-.++.+++.+... .
T Consensus 606 vStiL~~L~-~k~p~vR~~aadl~~sl~~v-lk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 606 VSTILKLLR-SKPPDVRIRAADLMGSLAKV-LKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHhc-CCCccHHHHHHHHHHHHHHH-HHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhccc
Confidence 456677788 47889999999988888654 32221 2223332 345665 567899988888888877522 2
Q ss_pred hhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC
Q 041050 257 KLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN 336 (408)
Q Consensus 257 ~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~ 336 (408)
..+--+ .|.+|.|..+|++.+..+..+....+.-++..+++-. |..+|-+.-. .|+..|++
T Consensus 681 ~mqpPi--~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi-----------~~rEWMRIcf------eLvd~Lks 741 (975)
T COG5181 681 SMQPPI--SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYI-----------GVREWMRICF------ELVDSLKS 741 (975)
T ss_pred ccCCch--hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccC-----------CHHHHHHHHH------HHHHHHHH
Confidence 222222 4788999999999999999988888888776433321 2222222211 35666777
Q ss_pred CCHHHHHHHHHHHHHHcc
Q 041050 337 EAAPIRRHIELALCHLAQ 354 (408)
Q Consensus 337 ~~~~v~~~a~~aL~~La~ 354 (408)
.+.++|++|...++-++.
T Consensus 742 ~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 742 WNKEIRRNATETFGCISR 759 (975)
T ss_pred hhHHHHHhhhhhhhhHHh
Confidence 777777777777666654
No 136
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=1.3 Score=47.01 Aligned_cols=209 Identities=13% Similarity=0.097 Sum_probs=129.0
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhH---HHHH
Q 041050 146 LSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQ---ELIM 221 (408)
Q Consensus 146 l~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~---~~i~ 221 (408)
.+.-.+++.+++..|...|..|.. .-+.-..-++....+.-+..++ +++++|.-.++..=+++|...-+.- ...+
T Consensus 223 cEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amk-s~~deValQaiEFWsticeEEiD~~~e~~e~~ 301 (859)
T KOG1241|consen 223 CEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMK-SDNDEVALQAIEFWSTICEEEIDLAIEYGEAV 301 (859)
T ss_pred eecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344457889999999999998876 4333333344434555566667 4678898889888888876521100 1111
Q ss_pred h---------------cCcHHHHHHHhhc-CCCH--HH--HHHHHHHHHHH-h---CCchhHHHHHhcccHHHHHHhhcC
Q 041050 222 A---------------QGGISLLSTTAAD-AEDP--QT--LRMVAGAIANL-C---GNDKLQMKLRSEGGIRALLGMVRC 277 (408)
Q Consensus 222 ~---------------~g~i~~Lv~lL~~-~~~~--~v--~~~a~~aL~nL-~---~~~~~~~~i~~~g~l~~L~~lL~~ 277 (408)
+ .+.+|.|+++|.+ .+++ +. ...|++++.-| + +|+ |+. -.++.+-.-+++
T Consensus 302 d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~-----Iv~-~Vl~Fiee~i~~ 375 (859)
T KOG1241|consen 302 DQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD-----IVP-HVLPFIEENIQN 375 (859)
T ss_pred hcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc-----chh-hhHHHHHHhcCC
Confidence 1 2456778888864 2221 11 22333333322 2 332 211 233444445567
Q ss_pred CCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCch
Q 041050 278 GHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEV 357 (408)
Q Consensus 278 ~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~ 357 (408)
+|-.-+..++.++..+-. |....+..=+-.+++|.++.++..+.--++..++|+++.++..-.
T Consensus 376 pdwr~reaavmAFGSIl~-----------------gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~ 438 (859)
T KOG1241|consen 376 PDWRNREAAVMAFGSILE-----------------GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP 438 (859)
T ss_pred cchhhhhHHHHHHHhhhc-----------------CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch
Confidence 888888888899988875 444444444556899999999998888889999999999998722
Q ss_pred -hH-HHHHhCCcHHHHHHHHhcC
Q 041050 358 -NA-REMISGGALWELVRISRDC 378 (408)
Q Consensus 358 -~~-~~l~~~g~i~~L~~ll~~~ 378 (408)
.+ ....-.+.+..|++-+.+.
T Consensus 439 e~~~n~~~l~~~l~~l~~gL~De 461 (859)
T KOG1241|consen 439 EAIINQELLQSKLSALLEGLNDE 461 (859)
T ss_pred hhcccHhhhhHHHHHHHHHhhhC
Confidence 21 2222455666666666543
No 137
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.06 E-value=0.13 Score=54.11 Aligned_cols=147 Identities=18% Similarity=0.200 Sum_probs=99.2
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhccCChhhH--HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCC---chhH
Q 041050 185 SLLMLLRSFEDETIRRVAAGAIANLAMNAEANQ--ELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGN---DKLQ 259 (408)
Q Consensus 185 ~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~--~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~---~~~~ 259 (408)
.++..|+ +.++.+|..|+..++.|+.- -..+ ..++..=|+ .|.+.| ..++|+++-.++++|..++.. ..-+
T Consensus 803 tiL~rLn-nksa~vRqqaadlis~la~V-lktc~ee~~m~~lGv-vLyEyl-geeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 803 TILWRLN-NKSAKVRQQAADLISSLAKV-LKTCGEEKLMGHLGV-VLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHhc-CCChhHHHHHHHHHHHHHHH-HHhccHHHHHHHhhH-HHHHhc-CcccHHHHHHHHHHHHHHHHhccccccC
Confidence 4455666 46788999999999888765 3333 223333232 356776 668899988888888877622 1111
Q ss_pred HHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCH
Q 041050 260 MKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAA 339 (408)
Q Consensus 260 ~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~ 339 (408)
--+ .+.+|.|..+|++.+..|+.++...+.-++..+++-. +..+|-+.- =-|+++|++.+.
T Consensus 879 pPi--~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v-----------~aREWMRIc------feLlelLkahkK 939 (1172)
T KOG0213|consen 879 PPI--KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYV-----------SAREWMRIC------FELLELLKAHKK 939 (1172)
T ss_pred CCh--hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccC-----------CHHHHHHHH------HHHHHHHHHHHH
Confidence 112 4678889999999999999999999988886333311 222222222 246778888889
Q ss_pred HHHHHHHHHHHHHcc
Q 041050 340 PIRRHIELALCHLAQ 354 (408)
Q Consensus 340 ~v~~~a~~aL~~La~ 354 (408)
++|+.|...++-++.
T Consensus 940 ~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 940 EIRRAAVNTFGYIAK 954 (1172)
T ss_pred HHHHHHHhhhhHHHH
Confidence 999999988888774
No 138
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.93 E-value=0.43 Score=42.36 Aligned_cols=92 Identities=16% Similarity=0.136 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChh
Q 041050 238 DPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKS 316 (408)
Q Consensus 238 ~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~ 316 (408)
+|.++..++.+++.|| ..+..-+ ..++.+...|+++++.|++.|+.+|..|... +.-.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~----------------d~ik 59 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILE----------------DMIK 59 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc----------------Ccee
Confidence 5789999999999998 4443322 4577799999999999999999999999851 1111
Q ss_pred hHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 317 GRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 317 ~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
. +...+..++.++..++++|+..|..++..+...
T Consensus 60 ~-----k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 60 V-----KGQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred e-----hhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 1 222347788888889999999999999998877
No 139
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.88 E-value=1.2 Score=41.80 Aligned_cols=171 Identities=16% Similarity=0.174 Sum_probs=93.9
Q ss_pred HHHHhcCHHHHHHhhc--CCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccC
Q 041050 135 KLFEQVGLHKILSLLE--SEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMN 212 (408)
Q Consensus 135 ~l~~~~~v~~Ll~lL~--s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~ 212 (408)
++-....+|.++..|. +..+-+|..|+.+|+++.. .+.++.+-+..+ ++..+++..+..|+..+-.-
T Consensus 62 Q~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~----------~~~~~~l~k~~~-dp~~~v~ETc~lAi~rle~~ 130 (289)
T KOG0567|consen 62 QMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD----------PESLEILTKYIK-DPCKEVRETCELAIKRLEWK 130 (289)
T ss_pred hhccchhhHHHHHHhcccccchHHHHHHHHHHHhhcc----------hhhHHHHHHHhc-CCccccchHHHHHHHHHHHh
Confidence 3444556999998887 5667889999999998763 223444444443 44556666555666555322
Q ss_pred ChhhHH-----HH--------HhcCcHHHHHHHhhcCCCHHHHH-HHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCC
Q 041050 213 AEANQE-----LI--------MAQGGISLLSTTAADAEDPQTLR-MVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCG 278 (408)
Q Consensus 213 ~~~~~~-----~i--------~~~g~i~~Lv~lL~~~~~~~v~~-~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~ 278 (408)
+.... .. ...+-+..|-..|.+...|...+ .+...|.|+.+. ..+.+|..-+..+
T Consensus 131 -~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E----------eaI~al~~~l~~~ 199 (289)
T KOG0567|consen 131 -DIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE----------EAINALIDGLADD 199 (289)
T ss_pred -hccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH----------HHHHHHHHhcccc
Confidence 10000 00 11112222322222333333322 222333332211 1344455555666
Q ss_pred CHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC--CCHHHHHHHHHHHHHHccC
Q 041050 279 HPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN--EAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 279 ~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~--~~~~v~~~a~~aL~~La~~ 355 (408)
++-.+..++.+++.|-. .-.+|.|.+.|.. +++.+|.+|+.||+.++.+
T Consensus 200 SalfrhEvAfVfGQl~s----------------------------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e 250 (289)
T KOG0567|consen 200 SALFRHEVAFVFGQLQS----------------------------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE 250 (289)
T ss_pred hHHHHHHHHHHHhhccc----------------------------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH
Confidence 67777788888877753 2356777776643 4777788888888888865
No 140
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.87 E-value=0.57 Score=43.88 Aligned_cols=168 Identities=11% Similarity=0.142 Sum_probs=115.1
Q ss_pred chhhhhhcCCCCchHHHHHHhcCHHHHHHhhcC-----CCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHc
Q 041050 119 HSQFRDSGNGQKAPITKLFEQVGLHKILSLLES-----EDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLR 191 (408)
Q Consensus 119 ~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s-----~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~ 191 (408)
.+.+++.+.++.+....++.....--|..+|+. +.+.+|-.++.+++.|.. +++....+...+.+|.-+..++
T Consensus 70 aLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me 149 (262)
T PF04078_consen 70 ALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIME 149 (262)
T ss_dssp HHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHH
T ss_pred HHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHH
Confidence 356777777777777777777653344466652 347799999999999988 5667777788888999999998
Q ss_pred CCCCHHHHHHHHHHHHHhccCChhhHHHHHhc--------CcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHH
Q 041050 192 SFEDETIRRVAAGAIANLAMNAEANQELIMAQ--------GGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLR 263 (408)
Q Consensus 192 ~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~--------g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~ 263 (408)
. .+.--+..|..++..+-.+ +..-.-+.++ .++..++.-+...+++.+.+++.++-..|+.|+..+..+.
T Consensus 150 ~-GselSKtvAtfIlqKIL~d-d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~ 227 (262)
T PF04078_consen 150 F-GSELSKTVATFILQKILLD-DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALR 227 (262)
T ss_dssp H-S-HHHHHHHHHHHHHHHHS-HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHH
T ss_pred h-ccHHHHHHHHHHHHHHHcc-hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHH
Confidence 5 4666777788888888887 6554433222 1333445555577899999999999999999999999887
Q ss_pred hcccHHHHHHhhc--------CCCHHHHHHHHHHHHHh
Q 041050 264 SEGGIRALLGMVR--------CGHPDVLSQVARGIANF 293 (408)
Q Consensus 264 ~~g~l~~L~~lL~--------~~~~~v~~~a~~aL~nL 293 (408)
+ . +...|+ .+|+.+++.-...+.|+
T Consensus 228 ~--~---LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 228 Q--C---LPDQLRDGTFSNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp H--H---S-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred H--h---CcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 5 2 333443 24677776666666665
No 141
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.85 E-value=3.7 Score=39.88 Aligned_cols=191 Identities=17% Similarity=0.191 Sum_probs=107.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHh--CCHHHHHHHHcCCCCHHHHHHHHHHHHHhccC--ChhhH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEA--GGLSSLLMLLRSFEDETIRRVAAGAIANLAMN--AEANQ 217 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~--g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~--~~~~~ 217 (408)
+...+..+.......|..++..+.++.........+.+. -.+..+...++.+.. .-+..|+.++.-++.. .....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccH
Confidence 455566667777999999999998876432222222221 135667777775433 4455576766666544 22444
Q ss_pred HHHHhcCcHHHHHHHhhcCC-CHHHHHHHHHHHHHHh----CCchhHHHHHhcccHHHHHHh--hc----------CCCH
Q 041050 218 ELIMAQGGISLLSTTAADAE-DPQTLRMVAGAIANLC----GNDKLQMKLRSEGGIRALLGM--VR----------CGHP 280 (408)
Q Consensus 218 ~~i~~~g~i~~Lv~lL~~~~-~~~v~~~a~~aL~nL~----~~~~~~~~i~~~g~l~~L~~l--L~----------~~~~ 280 (408)
..+++. ..|.|...+..+. .+.++..++.+|+-++ .++......++ .+..+... .+ .+++
T Consensus 124 ~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 124 EEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence 555543 5678888876543 4556666665655543 22222221111 22222211 11 2235
Q ss_pred HHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHc
Q 041050 281 DVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLA 353 (408)
Q Consensus 281 ~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La 353 (408)
.+...|+.+-+-|.. ..+..... ... ...+|.|+.+|.+.+.+||..|..+|.-|-
T Consensus 201 ~l~~aAL~aW~lLlt---------------~~~~~~~~-~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 201 ALVAAALSAWALLLT---------------TLPDSKLE-DLL-EEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHHHh---------------cCCHHHHH-HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 677666644444432 00111122 222 246899999999999999999988887664
No 142
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.80 E-value=0.37 Score=45.22 Aligned_cols=97 Identities=8% Similarity=0.162 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhh
Q 041050 197 TIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMV 275 (408)
Q Consensus 197 ~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL 275 (408)
.....|+.+|--++.-+|.-+..+....++..|+.+|..+..+.+...++.+|..+. .++.|...+-+.+|+..+..++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 344557788888888779999999999999999999976677889999999998887 8899999999999999999999
Q ss_pred cC--CCHHHHHHHHHHHHHh
Q 041050 276 RC--GHPDVLSQVARGIANF 293 (408)
Q Consensus 276 ~~--~~~~v~~~a~~aL~nL 293 (408)
++ .+.+++..+...|.-.
T Consensus 186 k~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred ccccccHHHhHHHHHHHHHH
Confidence 64 4567877777544433
No 143
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.79 E-value=0.91 Score=43.78 Aligned_cols=169 Identities=14% Similarity=0.152 Sum_probs=110.5
Q ss_pred HHHHH-HHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCchhH
Q 041050 183 LSSLL-MLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC--GNDKLQ 259 (408)
Q Consensus 183 i~~L~-~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~--~~~~~~ 259 (408)
+..|+ ..+. +.++.+|+.|+.+|+-.|.-+...... .++.+...+ ..+++.++..++.++..+. .....-
T Consensus 28 l~~lI~P~v~-~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~-~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 28 LDSLILPAVQ-SSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQAL-QKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 44444 3445 467899999999999988873322222 266777777 4458899999999999997 222221
Q ss_pred HHH-------HhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHH
Q 041050 260 MKL-------RSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQ 332 (408)
Q Consensus 260 ~~i-------~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~ 332 (408)
... .....++.+.+.+.+.+++++..|+.+++-|-.+ |.-.. ...++..|+-
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~----------------~~i~~-----~~~vL~~Lll 159 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS----------------GRISD-----PPKVLSRLLL 159 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc----------------CCCCc-----HHHHHHHHHH
Confidence 111 2245677788888888999999999999998741 11000 1233444433
Q ss_pred hccC----CCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCC
Q 041050 333 NANN----EAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCS 379 (408)
Q Consensus 333 lL~~----~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~ 379 (408)
+--+ +++.+|..-...+-..+......+..+..+.++.+..+.....
T Consensus 160 ~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 160 LYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcc
Confidence 3322 3567788878888888877665567777777777777776543
No 144
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.72 E-value=0.11 Score=54.10 Aligned_cols=184 Identities=20% Similarity=0.213 Sum_probs=118.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHH---HHc--C-C-chhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh
Q 041050 142 LHKILSLLESEDANVRIHAVKVVA---NLA--A-E-EANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE 214 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~---nLa--~-~-~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~ 214 (408)
....+.+++.++.++|..|+++++ |.. . . .....++.+. +...+...+. +....+|-.|+.+|+.+-.-++
T Consensus 236 Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~-aF~~vC~~v~-D~sl~VRV~AaK~lG~~~~vSe 313 (823)
T KOG2259|consen 236 YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDA-AFSSVCRAVR-DRSLSVRVEAAKALGEFEQVSE 313 (823)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHH-HHHHHHHHHh-cCceeeeehHHHHhchHHHhHH
Confidence 445567788888999999876665 444 1 1 1223334333 5778888887 3567788889999888766655
Q ss_pred hhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHH--h------------CCchhHHHHHhcccHHHHHHhhcCCCH
Q 041050 215 ANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANL--C------------GNDKLQMKLRSEGGIRALLGMVRCGHP 280 (408)
Q Consensus 215 ~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL--~------------~~~~~~~~i~~~g~l~~L~~lL~~~~~ 280 (408)
.....-.+..+...|-.--...+ ......++- + .+++.-..|+..|+.-+++.-+...--
T Consensus 314 e~i~QTLdKKlms~lRRkr~ahk------rpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~ 387 (823)
T KOG2259|consen 314 EIIQQTLDKKLMSRLRRKRTAHK------RPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFY 387 (823)
T ss_pred HHHHHHHHHHHhhhhhhhhhccc------chHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHH
Confidence 55554444433332211100001 111111111 0 123334567888999999998888888
Q ss_pred HHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 281 DVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 281 ~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
+|++.|...+..|+- ..+.. ...++..|+.+++.+..+||..|..+|..++.+
T Consensus 388 EVR~AAV~Sl~~La~-----------------ssP~F-----A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 388 EVRRAAVASLCSLAT-----------------SSPGF-----AVRALDFLVDMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHHHHHc-----------------CCCCc-----HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999984 22221 124678999999999999999999999998876
No 145
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.70 E-value=0.23 Score=43.19 Aligned_cols=144 Identities=13% Similarity=0.093 Sum_probs=94.7
Q ss_pred cHHHHHHHhhc-CCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhH
Q 041050 225 GISLLSTTAAD-AEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQ 303 (408)
Q Consensus 225 ~i~~Lv~lL~~-~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~ 303 (408)
.+..++..|.. ...++++..+.-++..+- +..++...+ -.-..+-.++..++.+-...+..++..+=.
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp-------- 72 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFP-------- 72 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCT--------
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhC--------
Confidence 34555655543 455678888888888773 333333322 223334445544444445566666666654
Q ss_pred HHhhhhhccCChhhHHHHH-hcCcHHHHHHhcc--CCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCH
Q 041050 304 VRFIRCTATGVKSGRSLLI-EDGALPWIVQNAN--NEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSR 380 (408)
Q Consensus 304 ~~~~i~~~~~~~~~~~~i~-~~g~l~~Lv~lL~--~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~ 380 (408)
+.++.-..+. ..|.++.+.+++. +++..++..++.+|..=|.+..++..+.+. +++.|.++...+++
T Consensus 73 ---------~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~~~~ 142 (157)
T PF11701_consen 73 ---------GPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKNSKD 142 (157)
T ss_dssp ---------TTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTTCC-
T ss_pred ---------CCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHccccc
Confidence 7777666665 7899999999998 778888999999888888887776666555 57888999976666
Q ss_pred HH-HHHHHHH
Q 041050 381 ED-IRSLAHR 389 (408)
Q Consensus 381 ~~-~~~~A~~ 389 (408)
+. ++.+|.-
T Consensus 143 ~~~ir~~A~v 152 (157)
T PF11701_consen 143 DSEIRVLAAV 152 (157)
T ss_dssp HH-CHHHHHH
T ss_pred hHHHHHHHHH
Confidence 66 7766663
No 146
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.66 E-value=1.9 Score=47.12 Aligned_cols=175 Identities=15% Similarity=0.231 Sum_probs=108.9
Q ss_pred HHHhCCHHHHHHHHcCCC----CHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh---cCCC----HHHHHHH
Q 041050 177 IVEAGGLSSLLMLLRSFE----DETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAA---DAED----PQTLRMV 245 (408)
Q Consensus 177 i~~~g~i~~L~~lL~~~~----~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~---~~~~----~~v~~~a 245 (408)
+.+.||+..|+.++.+.. ........+..|...+.- +.||+.+.+.|+++.|+..+. ..+. +.+-...
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 346899999999997532 345666678888888888 999999999999999987764 3323 4555555
Q ss_pred HHHHHHHhCCchhHH-----HHHhcc--------cHHHHHHhhcC----CCHHHHHHHHHHHHHhhccchhhhhHHHhhh
Q 041050 246 AGAIANLCGNDKLQM-----KLRSEG--------GIRALLGMVRC----GHPDVLSQVARGIANFAKCESRAATQVRFIR 308 (408)
Q Consensus 246 ~~aL~nL~~~~~~~~-----~i~~~g--------~l~~L~~lL~~----~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i 308 (408)
+.++--|........ ...... .+..+++.+.+ .++.+....++.|-+|+.
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~------------- 258 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTY------------- 258 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhc-------------
Confidence 555555542211111 111112 26667776653 468899999999999997
Q ss_pred hhccCChhhHHHHHhcCcHHHHHHhcc--------CCCHHHHHHHHHHHHHHccC----c---hhHHHHHhCCcHHHHHH
Q 041050 309 CTATGVKSGRSLLIEDGALPWIVQNAN--------NEAAPIRRHIELALCHLAQH----E---VNAREMISGGALWELVR 373 (408)
Q Consensus 309 ~~~~~~~~~~~~i~~~g~l~~Lv~lL~--------~~~~~v~~~a~~aL~~La~~----~---~~~~~l~~~g~i~~L~~ 373 (408)
|+++..+.+++ .+-++++ +++..+. .-.++.++.. . .-+..+++.|++...++
T Consensus 259 ----G~~e~m~~Lv~-----~F~p~l~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~ 326 (802)
T PF13764_consen 259 ----GNEEKMDALVE-----HFKPYLDFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAID 326 (802)
T ss_pred ----CCHHHHHHHHH-----HHHHhcChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHH
Confidence 77776666654 2222221 1122222 3334444432 1 23455668888887777
Q ss_pred HHhc
Q 041050 374 ISRD 377 (408)
Q Consensus 374 ll~~ 377 (408)
.+..
T Consensus 327 YL~~ 330 (802)
T PF13764_consen 327 YLLK 330 (802)
T ss_pred HHHH
Confidence 6654
No 147
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.66 E-value=0.18 Score=37.76 Aligned_cols=67 Identities=10% Similarity=0.117 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcC
Q 041050 157 RIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQG 224 (408)
Q Consensus 157 ~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g 224 (408)
...|+|++++++..+.....+.+.+.++.++++...++...+|-.|..+|.-++.. ....+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence 46799999999998888888878889999999998777889999999999999998 88877776654
No 148
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.63 E-value=1.2 Score=46.32 Aligned_cols=100 Identities=20% Similarity=0.249 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHH
Q 041050 183 LSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMK 261 (408)
Q Consensus 183 i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~ 261 (408)
...++...+. +...++.|+..|.....+.|+.++.- +..++.+. +++|..|+..|...|-.+| .+++....
T Consensus 25 y~~il~~~kg--~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLc-EDed~~iR~~aik~lp~~ck~~~~~v~k 96 (556)
T PF05918_consen 25 YKEILDGVKG--SPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLC-EDEDVQIRKQAIKGLPQLCKDNPEHVSK 96 (556)
T ss_dssp HHHHHHGGGS---HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHH-T-SSHHHHHHHHHHGGGG--T--T-HHH
T ss_pred HHHHHHHccC--CHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHH-hcccHHHHHHHHHhHHHHHHhHHHHHhH
Confidence 3445555553 67899999999999999889888775 67788997 6788999999999999999 55677666
Q ss_pred HHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 262 LRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 262 i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
+. ..|+++|.++++.....+-.+|..|-.
T Consensus 97 va-----DvL~QlL~tdd~~E~~~v~~sL~~ll~ 125 (556)
T PF05918_consen 97 VA-----DVLVQLLQTDDPVELDAVKNSLMSLLK 125 (556)
T ss_dssp HH-----HHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence 64 469999999998888888888888875
No 149
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.59 E-value=0.35 Score=38.48 Aligned_cols=90 Identities=12% Similarity=0.059 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHH--hcccHHHHHHhhc
Q 041050 199 RRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLR--SEGGIRALLGMVR 276 (408)
Q Consensus 199 ~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~--~~g~l~~L~~lL~ 276 (408)
|+.++.+|+..+..-+..-....+ ..+++++..+ .+++..||..|+.+|.|++... +..+. =...+..|.+++.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCF-DDQDSRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHc
Confidence 445566666554432222222222 2477788887 6788999999999999998332 22332 2457788888889
Q ss_pred CCCHHHHHHHHHHHHHh
Q 041050 277 CGHPDVLSQVARGIANF 293 (408)
Q Consensus 277 ~~~~~v~~~a~~aL~nL 293 (408)
.+++.|+..| ..|-++
T Consensus 79 D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRL 94 (97)
T ss_pred CCchhHHHHH-HHHHHH
Confidence 9999988644 555544
No 150
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.53 E-value=0.54 Score=50.08 Aligned_cols=166 Identities=20% Similarity=0.276 Sum_probs=107.0
Q ss_pred HhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcH
Q 041050 147 SLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGI 226 (408)
Q Consensus 147 ~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i 226 (408)
.+|.|.++.+-..++.+.+.+|-...+ ...+.+|+.+|.+ +..++...+..|+-++.- .+..| -
T Consensus 294 pLl~S~n~sVVmA~aql~y~lAP~~~~------~~i~kaLvrLLrs--~~~vqyvvL~nIa~~s~~---~~~lF-----~ 357 (968)
T KOG1060|consen 294 PLLQSRNPSVVMAVAQLFYHLAPKNQV------TKIAKALVRLLRS--NREVQYVVLQNIATISIK---RPTLF-----E 357 (968)
T ss_pred HHHhcCCcHHHHHHHhHHHhhCCHHHH------HHHHHHHHHHHhc--CCcchhhhHHHHHHHHhc---chhhh-----h
Confidence 566788899988999999888763211 1136789999985 567777776666666554 11111 1
Q ss_pred HHHHHHhhcCCCH-HHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHH
Q 041050 227 SLLSTTAADAEDP-QTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVR 305 (408)
Q Consensus 227 ~~Lv~lL~~~~~~-~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~ 305 (408)
|.+-.+.-.+.|| .+...=+.+|.||+........+.+ +.-..++.|.++...+..+|+-++. +..
T Consensus 358 P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE------~q~YI~s~d~~faa~aV~AiGrCA~---~~~---- 424 (968)
T KOG1060|consen 358 PHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRE------LQTYIKSSDRSFAAAAVKAIGRCAS---RIG---- 424 (968)
T ss_pred hhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHH------HHHHHhcCchhHHHHHHHHHHHHHH---hhC----
Confidence 3333332234454 4555667788888754444444444 5555667776655555555555543 111
Q ss_pred hhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc
Q 041050 306 FIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE 356 (408)
Q Consensus 306 ~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 356 (408)
=+...++.+|+.++++.+..|..+++..|..|-+..
T Consensus 425 ---------------sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~ 460 (968)
T KOG1060|consen 425 ---------------SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKD 460 (968)
T ss_pred ---------------chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhC
Confidence 134568999999999999999999999999988763
No 151
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.50 E-value=2.1 Score=43.31 Aligned_cols=188 Identities=20% Similarity=0.159 Sum_probs=111.0
Q ss_pred CHHHHHHhhc-CCCHHHHHHHHHHHHHHcCC-chhHHHHHHhCCHHHHHHHHcCCCC----HHHHHHHHHHHHHhccCCh
Q 041050 141 GLHKILSLLE-SEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSLLMLLRSFED----ETIRRVAAGAIANLAMNAE 214 (408)
Q Consensus 141 ~v~~Ll~lL~-s~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~L~~lL~~~~~----~~v~~~A~~aL~nLa~~~~ 214 (408)
-+..++.+.. +.++..+..++..++.|+.. +... .++ ..+..+...+.+..+ +......+|+...|....+
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLD-EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHH-HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 3566666654 56688889999998888763 1111 111 123333333311122 2333334455554444322
Q ss_pred hhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-chh--------HHHHHhcc----cHHHHHHhhcCCCHH
Q 041050 215 ANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGN-DKL--------QMKLRSEG----GIRALLGMVRCGHPD 281 (408)
Q Consensus 215 ~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~-~~~--------~~~i~~~g----~l~~L~~lL~~~~~~ 281 (408)
..-.. .+..|+.++. ++++-..++.++.-|..+ +.. -..+.++. .+|.|++..+..+..
T Consensus 267 ~~~~~-----~~~~L~~lL~---~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~ 338 (415)
T PF12460_consen 267 PLATE-----LLDKLLELLS---SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDE 338 (415)
T ss_pred chHHH-----HHHHHHHHhC---ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChh
Confidence 22222 2456778773 367888888888888755 322 12222333 355566666655666
Q ss_pred HHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc
Q 041050 282 VLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE 356 (408)
Q Consensus 282 v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 356 (408)
.+.....||+.+.. .-|...-.--=..++|.|++.|..++.+++..+..+|..+..+.
T Consensus 339 ~k~~yL~ALs~ll~-----------------~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 339 IKSNYLTALSHLLK-----------------NVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hHHHHHHHHHHHHh-----------------hCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 77788889998885 22221111111248999999999999999999999999998885
No 152
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.48 E-value=0.53 Score=48.33 Aligned_cols=191 Identities=15% Similarity=0.200 Sum_probs=120.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHH----cCCchhHHHHHH-hCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANL----AAEEANQEKIVE-AGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN 216 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nL----a~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~ 216 (408)
++-|+.+|..+++++|..+-.+|.++ ...|..- + ...++.++.-+.+ +++.++..|..-|...-.- +..
T Consensus 210 ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~----d~~~~i~vlv~~l~s-s~~~iq~~al~Wi~efV~i-~g~ 283 (675)
T KOG0212|consen 210 LDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM----DYDDMINVLVPHLQS-SEPEIQLKALTWIQEFVKI-PGR 283 (675)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc----CcccchhhccccccC-CcHHHHHHHHHHHHHHhcC-CCc
Confidence 45566888889999997777666544 3333321 2 2246777777774 5778888887766666555 444
Q ss_pred HHHHHhcCcHHHHHHHhhcCCCHHH---HHHHHHHHHHHhCCchhHHHHHhcc-cHHHHHHhhcCCCHHHHHHHH-HHHH
Q 041050 217 QELIMAQGGISLLSTTAADAEDPQT---LRMVAGAIANLCGNDKLQMKLRSEG-GIRALLGMVRCGHPDVLSQVA-RGIA 291 (408)
Q Consensus 217 ~~~i~~~g~i~~Lv~lL~~~~~~~v---~~~a~~aL~nL~~~~~~~~~i~~~g-~l~~L~~lL~~~~~~v~~~a~-~aL~ 291 (408)
.-...-.|.+..++.++.+++...+ ....-+.+..+++.+...+. ++.| .+..+.+.+.++..+.+-.|. |...
T Consensus 284 ~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~ 362 (675)
T KOG0212|consen 284 DLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIIL 362 (675)
T ss_pred chhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 4444556666677777643333223 22333344555555544433 3333 567777788888888888777 4444
Q ss_pred HhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchh
Q 041050 292 NFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVN 358 (408)
Q Consensus 292 nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~ 358 (408)
-... ..++-....+...+-|..-|.+.++++...+...+.++|.+++.
T Consensus 363 l~~~-------------------~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 363 LYHK-------------------APGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred HHhh-------------------CcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence 4332 11222223456788888999989999999999999999988544
No 153
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.42 E-value=0.42 Score=51.59 Aligned_cols=183 Identities=11% Similarity=0.040 Sum_probs=117.3
Q ss_pred HHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccH--HHHHHhhcC-CCHH
Q 041050 205 AIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGI--RALLGMVRC-GHPD 281 (408)
Q Consensus 205 aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l--~~L~~lL~~-~~~~ 281 (408)
+|+++..++++++..+.+.||...+...+..-...++++.+.+.+.|++.-.+.+........+ ...-.++.. ++.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 9999999999999999999999999999976677889999999999999444443322211111 233334443 4447
Q ss_pred HHHHHHHHHHHhhccchh---------hhhHHHhhhhhccCChhhHHHHHhcCcHHH-HHHhcc-CCCHHHHHHHHHHHH
Q 041050 282 VLSQVARGIANFAKCESR---------AATQVRFIRCTATGVKSGRSLLIEDGALPW-IVQNAN-NEAAPIRRHIELALC 350 (408)
Q Consensus 282 v~~~a~~aL~nL~~~~~~---------~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~-Lv~lL~-~~~~~v~~~a~~aL~ 350 (408)
.-..|+..++.+...+.. +..-+.+++.. .+.....+.-+....+ +..++. +..+..+..|.|++.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~---~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~ 650 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISR---WLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIK 650 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhc---cCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHH
Confidence 888899999998863221 11111111111 1111111222233333 444443 346778889999999
Q ss_pred HHccC-chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHH
Q 041050 351 HLAQH-EVNAREMISGGALWELVRISRDCSREDIRSLAHRT 390 (408)
Q Consensus 351 ~La~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~ 390 (408)
+++.. +++.+.+.+.|+++.+.++-......+.+..+...
T Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (699)
T KOG3665|consen 651 NVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLV 691 (699)
T ss_pred HHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHH
Confidence 98876 66666677999999888876644444455555433
No 154
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.11 E-value=1 Score=39.86 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=63.8
Q ss_pred CCchhHHHHHhcccHHHHHHhhcC---------CCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHh-
Q 041050 254 GNDKLQMKLRSEGGIRALLGMVRC---------GHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIE- 323 (408)
Q Consensus 254 ~~~~~~~~i~~~g~l~~L~~lL~~---------~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~- 323 (408)
....+-..+++.||+..|+..|.. .+.+....+.+|+..+. .+..+...++.
T Consensus 95 ~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~------------------n~~~G~~~v~~~ 156 (187)
T PF06371_consen 95 NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM------------------NTKYGLEAVLSH 156 (187)
T ss_dssp S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT------------------SSHHHHHHHHCS
T ss_pred CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH------------------ccHHHHHHHHcC
Confidence 344667788889999999987731 35578888999999987 56777777774
Q ss_pred cCcHHHHHHhccCCCHHHHHHHHHHHHHHc
Q 041050 324 DGALPWIVQNANNEAAPIRRHIELALCHLA 353 (408)
Q Consensus 324 ~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La 353 (408)
.+++..|+..+.+.+..++..|..+|..+|
T Consensus 157 ~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 157 PDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 788999999999999999999999998876
No 155
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.11 E-value=2.7 Score=40.48 Aligned_cols=167 Identities=16% Similarity=0.198 Sum_probs=101.7
Q ss_pred HHHHH-HhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh-hhHH
Q 041050 142 LHKIL-SLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE-ANQE 218 (408)
Q Consensus 142 v~~Ll-~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-~~~~ 218 (408)
++.|+ ..+.++++.+|+.|+..|+-.+. +...... .++.+...+.. ++..++..|+.++..+...++ ..-+
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQK-DDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 45555 77899999999999999998887 4433322 37778888864 588999999999998766522 1111
Q ss_pred HH-------HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcC----CCHHHHHHHH
Q 041050 219 LI-------MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRC----GHPDVLSQVA 287 (408)
Q Consensus 219 ~i-------~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~----~~~~v~~~a~ 287 (408)
.. .....+..+...+ .+.++.++..++..++.|-.+..... ....+..|+-+.-+ +++.++..-.
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred chhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 11 1123344566676 45688999999999999863322221 12233334443322 2344443333
Q ss_pred HHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC
Q 041050 288 RGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN 336 (408)
Q Consensus 288 ~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~ 336 (408)
..+-.++. .++.++. .+....+|.+-.+.+.
T Consensus 178 ~Ffp~y~~-----------------s~~~~Q~-~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 178 VFFPVYAS-----------------SSPENQE-RLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHc-----------------CCHHHHH-HHHHHHHHHHHHHHhC
Confidence 55566664 4444443 4444677776666654
No 156
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.01 E-value=2.1 Score=40.18 Aligned_cols=135 Identities=13% Similarity=0.098 Sum_probs=91.5
Q ss_pred HHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcC---C-CCHHHHHHHHHHHHHhccC-ChhhHHHHHhcCcHHHHHHHh
Q 041050 159 HAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRS---F-EDETIRRVAAGAIANLAMN-AEANQELIMAQGGISLLSTTA 233 (408)
Q Consensus 159 ~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~---~-~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~g~i~~Lv~lL 233 (408)
.|+..|.-+|.+|+.|..+++....--|.-.|+. . +-+.+|-.++++++.|... +++....+.+++.+|..+..+
T Consensus 69 naLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m 148 (262)
T PF04078_consen 69 NALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM 148 (262)
T ss_dssp HHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH
Confidence 3444445677799999999998764333344432 2 2356788899999999873 367778888999999999988
Q ss_pred hcCCCHHHHHHHHHHHHHHhCCchhHHHHHhc--------ccHHHHH-HhhcCCCHHHHHHHHHHHHHhh
Q 041050 234 ADAEDPQTLRMVAGAIANLCGNDKLQMKLRSE--------GGIRALL-GMVRCGHPDVLSQVARGIANFA 294 (408)
Q Consensus 234 ~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~--------g~l~~L~-~lL~~~~~~v~~~a~~aL~nL~ 294 (408)
.. .++-.+..|..++..+-.++.+-..++.. .++..++ .+...+++.+.+++.++-.-|+
T Consensus 149 e~-GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLs 217 (262)
T PF04078_consen 149 EF-GSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLS 217 (262)
T ss_dssp HH-S-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHT
T ss_pred Hh-ccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHc
Confidence 54 55567777887887877777665555431 1233333 3446789999999999999998
No 157
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=93.99 E-value=3.1 Score=39.07 Aligned_cols=160 Identities=13% Similarity=0.169 Sum_probs=92.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCC-CCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSF-EDETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~-~~~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
+..+.+....++.......+.+|+.... ..++|.|+..|... ..+-+|-.|..+|.++...
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~----------~~Av~~l~~vl~desq~pmvRhEAaealga~~~~-------- 99 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQD----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGDP-------- 99 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhcc----------chhhHHHHHHhcccccchHHHHHHHHHHHhhcch--------
Confidence 4555555555555555556666655433 55799999988743 3466777799999998833
Q ss_pred HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-C---------------CchhHHHHHhcccHHHHHH-hhcCCCHHH-
Q 041050 221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-G---------------NDKLQMKLRSEGGIRALLG-MVRCGHPDV- 282 (408)
Q Consensus 221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~---------------~~~~~~~i~~~g~l~~L~~-lL~~~~~~v- 282 (408)
+..+.|-+.. +.+...+...+..++..+- . +|... ...+-+.-|-. ++....+..
T Consensus 100 ---~~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~~ 172 (289)
T KOG0567|consen 100 ---ESLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLFE 172 (289)
T ss_pred ---hhHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCc---cccccHHHHHHHHHhcchhHHH
Confidence 2455565664 4555566666666666553 1 11111 01111222333 334444444
Q ss_pred HHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050 283 LSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ 354 (408)
Q Consensus 283 ~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~ 354 (408)
+..|...|+|+. +.+ .+..|++-+..++.-.|.+++.+++.|-.
T Consensus 173 Ry~amF~LRn~g-------------------~Ee---------aI~al~~~l~~~SalfrhEvAfVfGQl~s 216 (289)
T KOG0567|consen 173 RYRAMFYLRNIG-------------------TEE---------AINALIDGLADDSALFRHEVAFVFGQLQS 216 (289)
T ss_pred HHhhhhHhhccC-------------------cHH---------HHHHHHHhcccchHHHHHHHHHHHhhccc
Confidence 445667787773 333 44556666666777788888888866654
No 158
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.98 E-value=1.1 Score=49.90 Aligned_cols=147 Identities=13% Similarity=0.140 Sum_probs=110.5
Q ss_pred HHHHHHhhc----CCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh
Q 041050 142 LHKILSLLE----SEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN 216 (408)
Q Consensus 142 v~~Ll~lL~----s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~ 216 (408)
.|.++...+ ..++++|..|.-+|+.+.. +. .+.+. .+|.|+..+..+++|.+|..++-+++-++...|..
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa----~fces-~l~llftimeksp~p~IRsN~VvalgDlav~fpnl 995 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISA----EFCES-HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL 995 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH----HHHHH-HHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence 355556663 4679999999999998754 33 23333 68999999997789999999999999888875544
Q ss_pred HHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 041050 217 QELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKC 296 (408)
Q Consensus 217 ~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~ 296 (408)
.+.. .+.|...| .++++.+++.|.-+|.+|-.++ .+.-.|.+.-+...+..+++.+...|-.-+-.|+ .
T Consensus 996 ie~~-----T~~Ly~rL-~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els-~ 1064 (1251)
T KOG0414|consen 996 IEPW-----TEHLYRRL-RDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS-S 1064 (1251)
T ss_pred cchh-----hHHHHHHh-cCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh-h
Confidence 4443 34566666 5688999999999999998653 3344688888888999999999988887888887 4
Q ss_pred chhhhhHH
Q 041050 297 ESRAATQV 304 (408)
Q Consensus 297 ~~~~~~~~ 304 (408)
..+..+++
T Consensus 1065 k~n~iynl 1072 (1251)
T KOG0414|consen 1065 KGNTIYNL 1072 (1251)
T ss_pred cccchhhh
Confidence 44655554
No 159
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.91 E-value=0.072 Score=32.70 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=26.0
Q ss_pred cHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 326 ALPWIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 326 ~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
++|.+++++.+++++||..|+.+|..++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 378999999999999999999999998753
No 160
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.87 E-value=0.31 Score=50.82 Aligned_cols=192 Identities=16% Similarity=0.153 Sum_probs=107.2
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh------hhHH
Q 041050 145 ILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE------ANQE 218 (408)
Q Consensus 145 Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~------~~~~ 218 (408)
++.+..+.+..+|.+|+..|..|+..-..-.. -....+.+++ +++..||..|+.+++-.+.-.| ....
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~-----~Y~~A~~~ls-D~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA-----CYSRAVKHLS-DDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccHH-----HHHHHHHHhc-chHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 66677777888888888887777652211111 1455677887 4678899998666554433211 1111
Q ss_pred HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccc-
Q 041050 219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCE- 297 (408)
Q Consensus 219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~- 297 (408)
.. ...++..+...+ ++.+-.++..|+.+|+.+- .....++..-.=+.+++-++..-. -.+......++--+.+
T Consensus 277 kl-~D~aF~~vC~~v-~D~sl~VRV~AaK~lG~~~---~vSee~i~QTLdKKlms~lRRkr~-ahkrpk~l~s~GewSsG 350 (823)
T KOG2259|consen 277 KL-KDAAFSSVCRAV-RDRSLSVRVEAAKALGEFE---QVSEEIIQQTLDKKLMSRLRRKRT-AHKRPKALYSSGEWSSG 350 (823)
T ss_pred hh-HHHHHHHHHHHH-hcCceeeeehHHHHhchHH---HhHHHHHHHHHHHHHhhhhhhhhh-cccchHHHHhcCCcccC
Confidence 12 223566677776 4455678888888887664 112223322222334433321100 0011112223321100
Q ss_pred ----hhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCch
Q 041050 298 ----SRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEV 357 (408)
Q Consensus 298 ----~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~ 357 (408)
.++..+ .++....-++..|+-..++.=+..+-.+||+.|+..++.|+...+
T Consensus 351 k~~~advpse---------e~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP 405 (823)
T KOG2259|consen 351 KEWNADVPSE---------EDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP 405 (823)
T ss_pred ccccccCchh---------hccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC
Confidence 000111 123334456788999999999999999999999999999999743
No 161
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.81 E-value=0.34 Score=43.03 Aligned_cols=81 Identities=10% Similarity=0.026 Sum_probs=64.9
Q ss_pred hhhHHHHHhcCcHHHHHHHhh--------cCCCHHHHHHHHHHHHHHhCCchhHHHHHh-cccHHHHHHhhcCCCHHHHH
Q 041050 214 EANQELIMAQGGISLLSTTAA--------DAEDPQTLRMVAGAIANLCGNDKLQMKLRS-EGGIRALLGMVRCGHPDVLS 284 (408)
Q Consensus 214 ~~~~~~i~~~g~i~~Lv~lL~--------~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~-~g~l~~L~~lL~~~~~~v~~ 284 (408)
..-.+.|++.||+..|+.+|. ...+......++.++..|+.++.+...+.+ .+++..|...+.++++.++.
T Consensus 97 ~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~ 176 (187)
T PF06371_consen 97 ISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRK 176 (187)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHH
T ss_pred chHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHH
Confidence 345667778899999998874 225567888999999999988888888775 67899999999999999999
Q ss_pred HHHHHHHHhh
Q 041050 285 QVARGIANFA 294 (408)
Q Consensus 285 ~a~~aL~nL~ 294 (408)
.|+..|+.+|
T Consensus 177 ~~leiL~~lc 186 (187)
T PF06371_consen 177 LALEILAALC 186 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998886
No 162
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.81 E-value=2.8 Score=40.72 Aligned_cols=151 Identities=20% Similarity=0.178 Sum_probs=90.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCC---chhHHHHHHhCCHHHHHHHHcCCC-CHHHHHHHHHHHHHhcc---CCh
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAE---EANQEKIVEAGGLSSLLMLLRSFE-DETIRRVAAGAIANLAM---NAE 214 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~---~~~~~~i~~~g~i~~L~~lL~~~~-~~~v~~~A~~aL~nLa~---~~~ 214 (408)
++.+...++.+..+-+..|++++.-++.. ......+++. ..|.|..++.+.. .+.+|..++.+|+-++. ..+
T Consensus 88 ~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~ 166 (309)
T PF05004_consen 88 LDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDE 166 (309)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCCh
Confidence 56667777777666677788887766652 3455566664 6788888887543 45566666656655433 323
Q ss_pred hhHHHHHhcCcHHH--HHHHhh---------cCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHH
Q 041050 215 ANQELIMAQGGISL--LSTTAA---------DAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDV 282 (408)
Q Consensus 215 ~~~~~i~~~g~i~~--Lv~lL~---------~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v 282 (408)
......++ .+.. ....+. ..+++.+...|+.+-+-|. .-+...-.-.-...++.|+.+|.+++.+|
T Consensus 167 ~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~V 244 (309)
T PF05004_consen 167 EETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDV 244 (309)
T ss_pred hHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 22221111 1111 111111 1234567777776666665 33332111112356899999999999999
Q ss_pred HHHHHHHHHHhhc
Q 041050 283 LSQVARGIANFAK 295 (408)
Q Consensus 283 ~~~a~~aL~nL~~ 295 (408)
|..|..+|+-|-.
T Consensus 245 RiAAGEaiAll~E 257 (309)
T PF05004_consen 245 RIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998863
No 163
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.60 E-value=5.5 Score=42.33 Aligned_cols=101 Identities=11% Similarity=0.126 Sum_probs=67.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhc-CCCHHHHHHHHHHHHHhhccchhhhhHHH
Q 041050 227 SLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVR-CGHPDVLSQVARGIANFAKCESRAATQVR 305 (408)
Q Consensus 227 ~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~-~~~~~v~~~a~~aL~nL~~~~~~~~~~~~ 305 (408)
..|-.++ .+.++.++-.++..++.||.+....+.+..+ ...++..|+ ..|..+++.|.-.|-.+|. .+++
T Consensus 332 ~~Lg~fl-s~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD-~~Na----- 402 (938)
T KOG1077|consen 332 NQLGQFL-SHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCD-VSNA----- 402 (938)
T ss_pred HHHHHHh-hcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhc-hhhH-----
Confidence 3444444 3344556666666666666665555665554 677888887 7889999999999999873 1111
Q ss_pred hhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050 306 FIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ 354 (408)
Q Consensus 306 ~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~ 354 (408)
. .+|..+.+++.+-++.+|+..+.=+.-|+.
T Consensus 403 -------------k-----~IV~elLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 403 -------------K-----QIVAELLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred -------------H-----HHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 1 245678888888888888887655555553
No 164
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=93.47 E-value=9 Score=42.59 Aligned_cols=230 Identities=14% Similarity=0.106 Sum_probs=126.0
Q ss_pred HHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccC
Q 041050 134 TKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMN 212 (408)
Q Consensus 134 ~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~ 212 (408)
.+++| +.++.|++.+++.+..+|..|+.-++.++. .| ..+++. .|...+.++...+++..-..|+-+|+.|+..
T Consensus 336 ~eivE-~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad~-vi~svid~~~p~e~~~aWHgacLaLAELA~r 410 (1133)
T KOG1943|consen 336 PEIVE-FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELADQ-VIGSVIDLFNPAEDDSAWHGACLALAELALR 410 (1133)
T ss_pred HHHHH-HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHHH-HHHHHHHhcCcCCchhHHHHHHHHHHHHHhc
Confidence 34443 347888888999999999999999999988 44 222222 4666667666444455566788999999887
Q ss_pred ChhhHHHHHhcCcHHHHHHHhh-------cCCCHHHHHHHHHHHHHHh--CCchhHHHHHhcccHHHHH-HhhcCCCHHH
Q 041050 213 AEANQELIMAQGGISLLSTTAA-------DAEDPQTLRMVAGAIANLC--GNDKLQMKLRSEGGIRALL-GMVRCGHPDV 282 (408)
Q Consensus 213 ~~~~~~~i~~~g~i~~Lv~lL~-------~~~~~~v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~L~-~lL~~~~~~v 282 (408)
. -..-...+ ..+|.++.-+. .+....|+..|+.++|.++ .++.--.-+.. .....|+ ..+-+++-..
T Consensus 411 G-lLlps~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 411 G-LLLPSLLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNC 487 (1133)
T ss_pred C-CcchHHHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhH
Confidence 2 11111111 14555554442 2233468999999999998 33221111211 1222222 2334566677
Q ss_pred HHHHHHHHHHhhccchhh--hhHHH---------------hhhhh-ccCChhhHHHHHhcCcHHHHHHh-ccCCCHHHHH
Q 041050 283 LSQVARGIANFAKCESRA--ATQVR---------------FIRCT-ATGVKSGRSLLIEDGALPWIVQN-ANNEAAPIRR 343 (408)
Q Consensus 283 ~~~a~~aL~nL~~~~~~~--~~~~~---------------~~i~~-~~~~~~~~~~i~~~g~l~~Lv~l-L~~~~~~v~~ 343 (408)
++.|..|+.....--.+. -+.++ +.+|. ++..+.++..+ +..|+.. +.+-+..+|.
T Consensus 488 RRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~-----f~~L~t~Kv~HWd~~ire 562 (1133)
T KOG1943|consen 488 RRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPV-----FNHLLTKKVCHWDVKIRE 562 (1133)
T ss_pred hHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHH-----HHHHHhcccccccHHHHH
Confidence 888888887765310110 00000 00111 11222222222 2233322 4556899999
Q ss_pred HHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCC
Q 041050 344 HIELALCHLAQHEVNAREMISGGALWELVRISRDCS 379 (408)
Q Consensus 344 ~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~ 379 (408)
.++++|..|+..... ....+..++|+.-..+.+
T Consensus 563 laa~aL~~Ls~~~pk---~~a~~~L~~lld~~ls~~ 595 (1133)
T KOG1943|consen 563 LAAYALHKLSLTEPK---YLADYVLPPLLDSTLSKD 595 (1133)
T ss_pred HHHHHHHHHHHhhHH---hhcccchhhhhhhhcCCC
Confidence 999999998875321 123344555555443333
No 165
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.37 E-value=0.14 Score=31.32 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=24.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA 169 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~ 169 (408)
+|.++++++++++++|..|+.+|++++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999998863
No 166
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=93.25 E-value=4.6 Score=40.10 Aligned_cols=91 Identities=20% Similarity=0.248 Sum_probs=61.3
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCH-HHHHHHHHHHHHhccCChhhHHH
Q 041050 142 LHKILSLLE-SEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDE-TIRRVAAGAIANLAMNAEANQEL 219 (408)
Q Consensus 142 v~~Ll~lL~-s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~-~v~~~A~~aL~nLa~~~~~~~~~ 219 (408)
|.-++.-+. +....+|..++--|+.-+.++..+..+...|..+.++..+....+. ...-.++.+++-++.+ ...-..
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d-~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRD-GLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccC-Ccchhh
Confidence 555565555 4556889999988888888999999999999999999999543333 3333445555666666 444444
Q ss_pred HHhcCcHHHHHHHh
Q 041050 220 IMAQGGISLLSTTA 233 (408)
Q Consensus 220 i~~~g~i~~Lv~lL 233 (408)
+.+.+....++.++
T Consensus 102 ~~~~~~~~ll~~Ll 115 (361)
T PF07814_consen 102 LLDRDSLRLLLKLL 115 (361)
T ss_pred hhchhHHHHHHHHh
Confidence 44444444445544
No 167
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.14 E-value=3.6 Score=44.57 Aligned_cols=220 Identities=14% Similarity=0.094 Sum_probs=134.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHh
Q 041050 143 HKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMA 222 (408)
Q Consensus 143 ~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~ 222 (408)
+.-+..+.++...++..|+..|..+.........+...+.+...+..|++ +|+-+--.|...+..||.- ..
T Consensus 730 qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkd-edsyvyLnaI~gv~~Lcev--------y~ 800 (982)
T KOG4653|consen 730 QEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKD-EDSYVYLNAIRGVVSLCEV--------YP 800 (982)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcc-cCceeeHHHHHHHHHHHHh--------cc
Confidence 44445556677889999999999998877777888888889999999994 5665666677766666653 22
Q ss_pred cCcHHHHHH-HhhcCCC--HHHHHHHHHHHHHHh--CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 041050 223 QGGISLLST-TAADAED--PQTLRMVAGAIANLC--GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCE 297 (408)
Q Consensus 223 ~g~i~~Lv~-lL~~~~~--~~v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~ 297 (408)
...+|.|.+ ....... ++.+..+-.++.+++ .++-..... . -.+..-+...+.+|...+...+..+++|+.
T Consensus 801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq-- 876 (982)
T KOG4653|consen 801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-A-VLINTFLSGVREPDHEFRASSLANLGQLCQ-- 876 (982)
T ss_pred hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-H-HHHHHHHHhcCCchHHHHHhHHHHHHHHHH--
Confidence 345676666 3322222 355556667887776 232222111 1 233445556677777778888999999985
Q ss_pred hhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC-CCHHHHHHHHHHHHHHccCch-hHHHHH---hCCcHHHHH
Q 041050 298 SRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN-EAAPIRRHIELALCHLAQHEV-NAREMI---SGGALWELV 372 (408)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v~~~a~~aL~~La~~~~-~~~~l~---~~g~i~~L~ 372 (408)
+ ...-+.+.+. .++..++.+.+. +..-+|+.|+..+..+-.+.. ....+. -......+.
T Consensus 877 ------~--------~a~~vsd~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~ 940 (982)
T KOG4653|consen 877 ------L--------LAFQVSDFFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLL 940 (982)
T ss_pred ------H--------HhhhhhHHHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 0 0000011222 255566666654 477789999999988877632 222222 223344555
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 041050 373 RISRDCSREDIRSLAHRTL 391 (408)
Q Consensus 373 ~ll~~~~~~~~~~~A~~~L 391 (408)
...+...++..+-.|..++
T Consensus 941 ~~vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 941 SYVRQHDDDGLKLHAQLCL 959 (982)
T ss_pred HHHhcCchhHHHHHHHHHH
Confidence 5556555555666666444
No 168
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=93.11 E-value=1.3 Score=47.96 Aligned_cols=169 Identities=18% Similarity=0.196 Sum_probs=114.0
Q ss_pred HHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHH--HHHHHhhcCCCH
Q 041050 163 VVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGIS--LLSTTAADAEDP 239 (408)
Q Consensus 163 aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~--~Lv~lL~~~~~~ 239 (408)
+|++++. ++++...+++.||+..+...++..+..+++..+.+.+.|++.. ...+.......-+. .+-.++.+.++.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~-~~~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEV-LELRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHH-hhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 8889988 8999999999999999999999777889999999999999998 55544433222222 333344455555
Q ss_pred HHHHHHHHHHHHHhCCch-h---------HHHHHh--------------cccHHH-HHHhhc-CCCHHHHHHHHHHHHHh
Q 041050 240 QTLRMVAGAIANLCGNDK-L---------QMKLRS--------------EGGIRA-LLGMVR-CGHPDVLSQVARGIANF 293 (408)
Q Consensus 240 ~v~~~a~~aL~nL~~~~~-~---------~~~i~~--------------~g~l~~-L~~lL~-~~~~~v~~~a~~aL~nL 293 (408)
+.--.+++.++.+..+.+ . .+.+.+ ..-+.+ +..++. +..+..+..|.|++.++
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~ 652 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV 652 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence 777788899988874311 1 111111 111222 444553 45567778899999999
Q ss_pred hccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC-CCHHHHHHHHHHH
Q 041050 294 AKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN-EAAPIRRHIELAL 349 (408)
Q Consensus 294 ~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v~~~a~~aL 349 (408)
+. -++++...+.+.|+++.+...-.. ...+++..+...+
T Consensus 653 ~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 653 LE-----------------QNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred HH-----------------cChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 97 667777778888888877765432 2444555554444
No 169
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=93.10 E-value=1.2 Score=45.93 Aligned_cols=194 Identities=13% Similarity=0.214 Sum_probs=99.6
Q ss_pred cCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH--------HHH
Q 041050 150 ESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE--------LIM 221 (408)
Q Consensus 150 ~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~--------~i~ 221 (408)
++.+..+--.|...|.. ++++++...++.. |+..+.=++ ...+..+..++..||...|.-+. .+.
T Consensus 350 sd~Nr~IstyAITtLLK-TGt~e~idrLv~~--I~sfvhD~S----D~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~ 422 (898)
T COG5240 350 SDENRTISTYAITTLLK-TGTEETIDRLVNL--IPSFVHDMS----DGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLL 422 (898)
T ss_pred hcccccchHHHHHHHHH-cCchhhHHHHHHH--HHHHHHhhc----cCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 33444443334333332 2345555555544 555444443 13444455555555555443332 234
Q ss_pred hcCcHH-------HHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHh-------cc--------cHHHHHHhhcCCC
Q 041050 222 AQGGIS-------LLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRS-------EG--------GIRALLGMVRCGH 279 (408)
Q Consensus 222 ~~g~i~-------~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~-------~g--------~l~~L~~lL~~~~ 279 (408)
+.||.. .+..++. .+|+.++.|+..|+.+-.+-+..+..++ +| .+..+...+--.+
T Consensus 423 ~eGg~eFK~~~Vdaisd~~~--~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN 500 (898)
T COG5240 423 QEGGLEFKKYMVDAISDAME--NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILEN 500 (898)
T ss_pred hcccchHHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhh
Confidence 455543 3444442 3455666555555555433333222221 11 1223333333445
Q ss_pred HHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhH
Q 041050 280 PDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNA 359 (408)
Q Consensus 280 ~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~ 359 (408)
.-++..|..||..++.+.++. +....+...|..+++..++++|..|..++.++-..+.+.
T Consensus 501 ~ivRsaAv~aLskf~ln~~d~--------------------~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~da~~ 560 (898)
T COG5240 501 NIVRSAAVQALSKFALNISDV--------------------VSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSDACE 560 (898)
T ss_pred hHHHHHHHHHHHHhccCcccc--------------------ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhhhhh
Confidence 667777778887776521111 112234456777889899999999999999987444332
Q ss_pred HHHH---hCCcHHHHHH
Q 041050 360 REMI---SGGALWELVR 373 (408)
Q Consensus 360 ~~l~---~~g~i~~L~~ 373 (408)
.++ +.|-+|.|..
T Consensus 561 -pl~~sd~~~dipsle~ 576 (898)
T COG5240 561 -PLFSSDELGDIPSLEL 576 (898)
T ss_pred -ccccccccCCcchhHH
Confidence 344 4666666654
No 170
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.93 E-value=3.7 Score=42.35 Aligned_cols=172 Identities=13% Similarity=0.136 Sum_probs=109.2
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCC---HHHHHHHHHHHHHHhCCchhH
Q 041050 183 LSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAED---PQTLRMVAGAIANLCGNDKLQ 259 (408)
Q Consensus 183 i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~---~~v~~~a~~aL~nL~~~~~~~ 259 (408)
...++.++.++ +..-+..|..-|..++.+ +.....++...|+..|..++.+... .+++...++++..+....-..
T Consensus 85 a~~i~e~l~~~-~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 85 AKRIMEILTEG-NNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 34567777654 444455599999999999 9999999999999999999865443 345555555555443111000
Q ss_pred HHHHhcccHHHHHHhh--cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC
Q 041050 260 MKLRSEGGIRALLGMV--RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE 337 (408)
Q Consensus 260 ~~i~~~g~l~~L~~lL--~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~ 337 (408)
=......++..+..+. +..+..+...|...|-++.. +++..+..+.+.--+..|+..+...
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl-----------------~s~~~~~~v~eev~i~~li~hlq~~ 225 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVL-----------------GSDTLRQLVAEEVPIETLIRHLQVS 225 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHh-----------------CChHHHHHHHhcCcHHHHHHHHHhc
Confidence 0011112222233333 22344555666677777765 6777777888888899999999999
Q ss_pred CHHHHHHHHHHHHHHccC--chhHHHHHhCCcHHHHHH
Q 041050 338 AAPIRRHIELALCHLAQH--EVNAREMISGGALWELVR 373 (408)
Q Consensus 338 ~~~v~~~a~~aL~~La~~--~~~~~~l~~~g~i~~L~~ 373 (408)
+..++..|...+..+-.. ++.+..+++.-....+..
T Consensus 226 n~~i~~~aial~nal~~~a~~~~R~~~~~~l~~~~~R~ 263 (713)
T KOG2999|consen 226 NQRIQTCAIALLNALFRKAPDDKRFEMAKSLEQKQFRN 263 (713)
T ss_pred chHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Confidence 999999977777766654 334455554433333333
No 171
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.79 E-value=1.7 Score=46.26 Aligned_cols=138 Identities=14% Similarity=0.179 Sum_probs=99.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
++.++......|.+++.-.--.|.|-+. .|... .+++..++.=.. ++++.+|..|+..++.+-.+ ...+.+
T Consensus 51 F~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~-d~np~iR~lAlrtm~~l~v~--~i~ey~ 122 (734)
T KOG1061|consen 51 FPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCE-DPNPLIRALALRTMGCLRVD--KITEYL 122 (734)
T ss_pred hHHHHhhcccCCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCC-CCCHHHHHHHhhceeeEeeh--HHHHHH
Confidence 4556666666777777777777888777 44333 234555555555 46888998888887766554 222222
Q ss_pred HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
..+|...+ ++++|-+++.++-.++++-. .........|.+..|..++.+++|.|..+|..+|..+..
T Consensus 123 -----~~Pl~~~l-~d~~~yvRktaa~~vakl~~--~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e 189 (734)
T KOG1061|consen 123 -----CDPLLKCL-KDDDPYVRKTAAVCVAKLFD--IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHE 189 (734)
T ss_pred -----HHHHHHhc-cCCChhHHHHHHHHHHHhhc--CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 45677776 67888999888888888752 233456678899999999999999999999999999985
No 172
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=92.77 E-value=0.25 Score=49.80 Aligned_cols=172 Identities=12% Similarity=0.145 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-----CCch---hHHHHHhccc
Q 041050 196 ETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-----GNDK---LQMKLRSEGG 267 (408)
Q Consensus 196 ~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-----~~~~---~~~~i~~~g~ 267 (408)
.-++..|..++.-+..+..-.++.+.-.++...+.+.+ .+..-..+..++|+++|+. +-|. .+..+... .
T Consensus 405 ~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl-~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-l 482 (728)
T KOG4535|consen 405 RLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSL-EDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-L 482 (728)
T ss_pred HHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHh-hhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-H
Confidence 33555566666666666233344454555566666665 3345568899999999996 3343 22333222 1
Q ss_pred HHHHHHhh---cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhc-cCCCHHHHH
Q 041050 268 IRALLGMV---RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNA-NNEAAPIRR 343 (408)
Q Consensus 268 l~~L~~lL---~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL-~~~~~~v~~ 343 (408)
+..+.... ..+...|+.++.++|.|+.. ++.++ .+.-...+.+|.+..+.... -....+|+-
T Consensus 483 l~~~~~~A~~~~Ad~dkV~~navraLgnllQ--------vlq~i------~~~~~~e~~~~~~~~l~~~v~~~~~~kV~W 548 (728)
T KOG4535|consen 483 LLKMLRSAIEASADKDKVKSNAVRALGNLLQ--------FLQPI------EKPTFAEIIEESIQALISTVLTEAAMKVRW 548 (728)
T ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH--------HHHHh------hhccHHHHHHHHHHhcccceecccccccch
Confidence 22233322 22445688899999999873 22111 11111122334444443332 345788999
Q ss_pred HHHHHHHHHccCchh-HHHHH-hCCcHHHHHHHHhcCCHHHH
Q 041050 344 HIELALCHLAQHEVN-AREMI-SGGALWELVRISRDCSREDI 383 (408)
Q Consensus 344 ~a~~aL~~La~~~~~-~~~l~-~~g~i~~L~~ll~~~~~~~~ 383 (408)
+||.+++||-.++.- ...+- ...+.+.|..++++..+-.+
T Consensus 549 NaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKV 590 (728)
T KOG4535|consen 549 NACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKV 590 (728)
T ss_pred HHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceE
Confidence 999999999988543 12221 33356677777776554443
No 173
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.75 E-value=5.5 Score=41.14 Aligned_cols=153 Identities=15% Similarity=0.213 Sum_probs=105.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCC---HHHHHHHHHHHHHhccCChhhHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFED---ETIRRVAAGAIANLAMNAEANQE 218 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~---~~v~~~A~~aL~nLa~~~~~~~~ 218 (408)
...+.+.+.+++...+..|..-|..++.++.....++...|+..|.+++.++.. .++....+.+...+-.+ ...-=
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmeh-gvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEH-GVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhh-ceeee
Confidence 456778888888888888999999999999999999999999999999986533 34455455555554333 11000
Q ss_pred HHHhcCcHHHHHHHhh-cCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 219 LIMAQGGISLLSTTAA-DAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 219 ~i~~~g~i~~Lv~lL~-~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
..+...+|.....+.. +-.+..+...|+..+-++. +++..++.+.++--+..|+..+...+..++..|...+-.+..
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 0111112222222221 2344567788889999998 666788888888889999999998888888876655555543
No 174
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.52 E-value=0.46 Score=49.92 Aligned_cols=131 Identities=15% Similarity=0.071 Sum_probs=97.3
Q ss_pred CCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-chhHHHHHhcccHHHHH
Q 041050 194 EDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGN-DKLQMKLRSEGGIRALL 272 (408)
Q Consensus 194 ~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~-~~~~~~i~~~g~l~~L~ 272 (408)
.|+.++..|.-.|+.+---+...... -+|.|+..+.++++|.++.+++-.++.+.-+ ....+.. -..|.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~e-----hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~-----t~yLy 977 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCSE-----HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEH-----THYLY 977 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHH-----HHHHH
Confidence 68889998888887553221322222 3799999998899999999999999988622 1111222 23477
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHH
Q 041050 273 GMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHL 352 (408)
Q Consensus 273 ~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~L 352 (408)
+.|...+.+|++.|..++.+|.. +| .+.-.|-++.+..+|.+++..+...|-..+..+
T Consensus 978 rrL~De~~~V~rtclmti~fLil----------------ag------q~KVKGqlg~ma~~L~deda~Isdmar~fft~~ 1035 (1128)
T COG5098 978 RRLGDEDADVRRTCLMTIHFLIL----------------AG------QLKVKGQLGKMALLLTDEDAEISDMARHFFTQI 1035 (1128)
T ss_pred HHhcchhhHHHHHHHHHHHHHHH----------------cc------ceeeccchhhhHhhccCCcchHHHHHHHHHHHH
Confidence 77888999999999999999874 12 122358889999999999999999999999999
Q ss_pred ccCc
Q 041050 353 AQHE 356 (408)
Q Consensus 353 a~~~ 356 (408)
|..+
T Consensus 1036 a~Kd 1039 (1128)
T COG5098 1036 AKKD 1039 (1128)
T ss_pred Hhcc
Confidence 8764
No 175
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=92.44 E-value=13 Score=37.87 Aligned_cols=173 Identities=14% Similarity=0.168 Sum_probs=98.8
Q ss_pred CCHHHHHHHHHHHHHHc-C-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhc--CcHH
Q 041050 152 EDANVRIHAVKVVANLA-A-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQ--GGIS 227 (408)
Q Consensus 152 ~~~~v~~~A~~aL~nLa-~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~--g~i~ 227 (408)
+..+-+..|..-|..+. . .-..+++.+.. .+..++..|+++.+...+..|+.+|.-++.+.+ .+ +++. -.|.
T Consensus 299 e~a~~~k~alsel~~m~~e~sfsvWeq~f~~-iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~-~~--l~DstE~ai~ 374 (516)
T KOG2956|consen 299 ERASERKEALSELPKMLCEGSFSVWEQHFAE-ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP-AR--LFDSTEIAIC 374 (516)
T ss_pred cchhHHHHHHHHHHHHHHccchhHHHHHHHH-HHHHHHHHHccchhhHHHHHHHHHHHHHHHhch-Hh--hhchHHHHHH
Confidence 34566677777555443 3 33455555554 467888999866788899999999999988732 22 2211 1333
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHH-h-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHH
Q 041050 228 LLSTTAADAEDPQTLRMVAGAIANL-C-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVR 305 (408)
Q Consensus 228 ~Lv~lL~~~~~~~v~~~a~~aL~nL-~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~ 305 (408)
.++..- ...++.+.+.|...+..+ + .+|.. .+..+..++...|...--.+...+.-+...
T Consensus 375 K~Leaa-~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~--------- 436 (516)
T KOG2956|consen 375 KVLEAA-KDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADEPRAVAVIKMLTKLFER--------- 436 (516)
T ss_pred HHHHHH-hCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcchHHHHHHHHHHHHHhh---------
Confidence 444443 344555666665554444 3 33322 122244444333333333333344444320
Q ss_pred hhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050 306 FIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ 354 (408)
Q Consensus 306 ~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~ 354 (408)
..-+..-. ++ ..+.|.+++-..+.+..||+.|+++|..+..
T Consensus 437 ------l~~EeL~~-ll-~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 437 ------LSAEELLN-LL-PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred ------cCHHHHHH-hh-hhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 00011111 11 3688999999999999999999999987764
No 176
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.34 E-value=3.2 Score=44.06 Aligned_cols=109 Identities=20% Similarity=0.216 Sum_probs=75.5
Q ss_pred hcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH
Q 041050 139 QVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE 218 (408)
Q Consensus 139 ~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~ 218 (408)
++.+..++....+++..||...+..|+-+..+...+..-+-.+...+|..-+. +..+.||..|+.+|+.+-.+ +..-
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~-Drep~VRiqAv~aLsrlQ~d-~~de- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLK-DREPNVRIQAVLALSRLQGD-PKDE- 160 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHhcC-CCCC-
Confidence 44566667777789999999999999998874333333333335666766666 35789999999999999754 2211
Q ss_pred HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCc
Q 041050 219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGND 256 (408)
Q Consensus 219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~ 256 (408)
+..++..+..++..+++++|++.|+ .|++-++
T Consensus 161 ---e~~v~n~l~~liqnDpS~EVRRaaL---snI~vdn 192 (892)
T KOG2025|consen 161 ---ECPVVNLLKDLIQNDPSDEVRRAAL---SNISVDN 192 (892)
T ss_pred ---cccHHHHHHHHHhcCCcHHHHHHHH---HhhccCc
Confidence 1124567788888889999998664 5555333
No 177
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=92.17 E-value=0.34 Score=44.76 Aligned_cols=123 Identities=22% Similarity=0.241 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHcCCch---hHHHHHHhCCHHHHHHHHcC--------------CCCHHHHHHHHHHHHHhccCChhh
Q 041050 154 ANVRIHAVKVVANLAAEEA---NQEKIVEAGGLSSLLMLLRS--------------FEDETIRRVAAGAIANLAMNAEAN 216 (408)
Q Consensus 154 ~~v~~~A~~aL~nLa~~~~---~~~~i~~~g~i~~L~~lL~~--------------~~~~~v~~~A~~aL~nLa~~~~~~ 216 (408)
..+|+.|.-.|.|+++.=+ .-+.|.- ..+.-|+...-. .....-|+.|+.+|+.|+.. +.|
T Consensus 80 ~~lREnalV~laNisgqLdLs~~~e~I~~-PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~-e~N 157 (257)
T PF12031_consen 80 EQLRENALVTLANISGQLDLSDYPESIAR-PILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVI-ENN 157 (257)
T ss_pred HHHhhcceEeeeeeeeeeecccCchHHHH-HHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhhee-ccC
Confidence 4578888888888886211 1111111 112233333210 01234688999999999999 999
Q ss_pred HHHHHhcCcHHH-------HHHHhhcCCCHHHHHHHHHHHHHHh-CCchh-HHHHHhcccHHHHHHhhcCC
Q 041050 217 QELIMAQGGISL-------LSTTAADAEDPQTLRMVAGAIANLC-GNDKL-QMKLRSEGGIRALLGMVRCG 278 (408)
Q Consensus 217 ~~~i~~~g~i~~-------Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~-~~~i~~~g~l~~L~~lL~~~ 278 (408)
.+.|..++..++ |++++...+++..++.++-.|.||| ++... +..-.+.+++..|+..+...
T Consensus 158 VDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a 228 (257)
T PF12031_consen 158 VDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDA 228 (257)
T ss_pred cceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHH
Confidence 999999998764 4566667788899999999999999 44433 34556788999999988654
No 178
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=91.99 E-value=4.5 Score=37.15 Aligned_cols=136 Identities=15% Similarity=0.157 Sum_probs=91.5
Q ss_pred HHHHHHHHHHcCCchhHHHHHHhCC---HHHHHHHHcC-CCCHHHHHHHHHHHHHhccC-ChhhHHHHHhcCcHHHHHHH
Q 041050 158 IHAVKVVANLAAEEANQEKIVEAGG---LSSLLMLLRS-FEDETIRRVAAGAIANLAMN-AEANQELIMAQGGISLLSTT 232 (408)
Q Consensus 158 ~~A~~aL~nLa~~~~~~~~i~~~g~---i~~L~~lL~~-~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~g~i~~Lv~l 232 (408)
..|+..|.-+++.|+.+..+++.-. +-+.+...++ +.-+..|..++++++.|..+ ++.....+..+..+|.++.+
T Consensus 118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 4456666677789999888877643 2233333332 23466788899999999886 35566677788999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhc--------ccHHHHHH-hhcCCCHHHHHHHHHHHHHhh
Q 041050 233 AADAEDPQTLRMVAGAIANLCGNDKLQMKLRSE--------GGIRALLG-MVRCGHPDVLSQVARGIANFA 294 (408)
Q Consensus 233 L~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~--------g~l~~L~~-lL~~~~~~v~~~a~~aL~nL~ 294 (408)
+. ..++--...++.++.-+-+|+..-+.++.. ..+..++. +...+...+.+.+.++-..|+
T Consensus 198 me-~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLs 267 (315)
T COG5209 198 ME-LGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLS 267 (315)
T ss_pred HH-hhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeec
Confidence 74 444455666777777777888777766541 12333333 335567788889999888887
No 179
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=91.98 E-value=3.3 Score=46.38 Aligned_cols=192 Identities=21% Similarity=0.235 Sum_probs=114.6
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHcC-----CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccC---
Q 041050 141 GLHKILSLLESEDANVRIHAVKVVANLAA-----EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMN--- 212 (408)
Q Consensus 141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-----~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~--- 212 (408)
.+|-++.++..+..+||..|+.+|..+.. .+.+...+.+. .+|.|-.++.++...-+|..-+..|+.||..
T Consensus 463 VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY-lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r 541 (1431)
T KOG1240|consen 463 VLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY-LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR 541 (1431)
T ss_pred hHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-hhhhhHhhhccCccceehhhHHhhHHHHHHHHHH
Confidence 47999999999999999999999986643 23334444444 6788888887533344444444444444321
Q ss_pred ---------------ChhhH-----------HHHHhcCcHHHH-HHHhhcCCCHHHHHHHHHHHHHHh---C----Cc--
Q 041050 213 ---------------AEANQ-----------ELIMAQGGISLL-STTAADAEDPQTLRMVAGAIANLC---G----ND-- 256 (408)
Q Consensus 213 ---------------~~~~~-----------~~i~~~g~i~~L-v~lL~~~~~~~v~~~a~~aL~nL~---~----~~-- 256 (408)
.+.+. ..+.. ++... ..++ ..++|-|++..+..|+.|| + |+
T Consensus 542 Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~--~V~~~v~sLl-sd~~~~Vkr~Lle~i~~LC~FFGk~ksND~i 618 (1431)
T KOG1240|consen 542 FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH--TVEQMVSSLL-SDSPPIVKRALLESIIPLCVFFGKEKSNDVI 618 (1431)
T ss_pred HHHHHHHHHhcccccCcccccccccccchHHHHHHH--HHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHhhhcccccch
Confidence 01110 00100 22222 3454 4455677777777777777 2 11
Q ss_pred -------------hhHHHHH---------------hcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhh
Q 041050 257 -------------KLQMKLR---------------SEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIR 308 (408)
Q Consensus 257 -------------~~~~~i~---------------~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i 308 (408)
..|..+. ++..+|.|.+-|.++.+.|...|+++|.-|+..
T Consensus 619 LshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~------------ 686 (1431)
T KOG1240|consen 619 LSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL------------ 686 (1431)
T ss_pred HHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh------------
Confidence 1122221 334456666666777788888888888888750
Q ss_pred hhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 309 CTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 309 ~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
|.-. +..+. ..+.....+|-+++.-||..++.+|...+..
T Consensus 687 ----~ll~-K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 687 ----GLLR-KPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred ----cccc-hHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 1100 11111 2445566677788999999999999887765
No 180
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.60 E-value=5.8 Score=42.37 Aligned_cols=66 Identities=18% Similarity=0.076 Sum_probs=41.2
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhc-cCCCHHHHHHH
Q 041050 268 IRALLGMV-RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNA-NNEAAPIRRHI 345 (408)
Q Consensus 268 l~~L~~lL-~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL-~~~~~~v~~~a 345 (408)
++.|+... ...+.+|++.|.-+|.-++. . +...+|..+++| .+-++-||.-+
T Consensus 556 ir~lLh~aVsD~nDDVrRaAVialGFVl~-----------------~---------dp~~~~s~V~lLses~N~HVRyGa 609 (929)
T KOG2062|consen 556 IRRLLHVAVSDVNDDVRRAAVIALGFVLF-----------------R---------DPEQLPSTVSLLSESYNPHVRYGA 609 (929)
T ss_pred HHHhhcccccccchHHHHHHHHHheeeEe-----------------c---------ChhhchHHHHHHhhhcChhhhhhH
Confidence 33344432 34556666666666665553 2 234566777766 45588888888
Q ss_pred HHHHHHHccCchhH
Q 041050 346 ELALCHLAQHEVNA 359 (408)
Q Consensus 346 ~~aL~~La~~~~~~ 359 (408)
+.+|+-.|.+.-+.
T Consensus 610 A~ALGIaCAGtG~~ 623 (929)
T KOG2062|consen 610 AMALGIACAGTGLK 623 (929)
T ss_pred HHHHhhhhcCCCcH
Confidence 88888888775443
No 181
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=91.07 E-value=4.2 Score=44.52 Aligned_cols=212 Identities=13% Similarity=0.039 Sum_probs=119.8
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHcC--CchhH------HHHHHhCCHHHHHHHHc-CCCCHHHHHHHHHHHHHhccCChhh
Q 041050 146 LSLLESEDANVRIHAVKVVANLAA--EEANQ------EKIVEAGGLSSLLMLLR-SFEDETIRRVAAGAIANLAMNAEAN 216 (408)
Q Consensus 146 l~lL~s~~~~v~~~A~~aL~nLa~--~~~~~------~~i~~~g~i~~L~~lL~-~~~~~~v~~~A~~aL~nLa~~~~~~ 216 (408)
+..+..+-..+-..|+.+...+.. .+... ...+.. .+...++.|. .+.|.+|+..|..+++.+-.+..+.
T Consensus 526 ~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~-m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~ 604 (1233)
T KOG1824|consen 526 VAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKT-MYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDF 604 (1233)
T ss_pred HHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHH-HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhh
Confidence 333444556666666666665543 11111 111111 1233344443 3468899999999888776552211
Q ss_pred HHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHH-HhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 217 QELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKL-RSEGGIRALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 217 ~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i-~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
-... -...++.+++-| .++.++-.|+.++..++..+-.-... +-..+++.|.+.++...-..+..+..++-.|..
T Consensus 605 l~~e-L~~~L~il~eRl---~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~ 680 (1233)
T KOG1824|consen 605 LGNE-LPRTLPILLERL---GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVK 680 (1233)
T ss_pred hhhh-hHHHHHHHHHHH---hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 112345555555 34567888999999998665332211 123456667777765544555555555555553
Q ss_pred cchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHH
Q 041050 296 CESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRIS 375 (408)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll 375 (408)
+. .......+.+ -++..+-.++...+-.+...|...|+.++......---+..-.++.++.++
T Consensus 681 ~~----------------~~~~~~~~~e-~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll 743 (1233)
T KOG1824|consen 681 NY----------------SDSIPAELLE-AVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLL 743 (1233)
T ss_pred HH----------------hccccHHHHH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHh
Confidence 10 0111111121 234455556666677788899999999999877766666777888888888
Q ss_pred hcCC
Q 041050 376 RDCS 379 (408)
Q Consensus 376 ~~~~ 379 (408)
+++-
T Consensus 744 ~Spl 747 (1233)
T KOG1824|consen 744 RSPL 747 (1233)
T ss_pred hCcc
Confidence 8753
No 182
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=91.02 E-value=2.7 Score=39.66 Aligned_cols=147 Identities=16% Similarity=0.166 Sum_probs=93.2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCC--HHHHHHHHcCC---CCHHHHHHHHHHHHHhccCChhhH
Q 041050 143 HKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGG--LSSLLMLLRSF---EDETIRRVAAGAIANLAMNAEANQ 217 (408)
Q Consensus 143 ~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~--i~~L~~lL~~~---~~~~v~~~A~~aL~nLa~~~~~~~ 217 (408)
..+...+.+=..+-+--++..++-++.++.....+...++ ...+..++... .++..+-.++.+++|+..+ +..+
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~-~~~~ 144 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH-PPGR 144 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS-CCCH
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC-CccH
Confidence 4444555444444466677777766666666555554442 44555554332 4678888899999999998 8888
Q ss_pred HHHHhcCc--HHHHHHHhhcCC---CHHHHHHHHHHHHHHhC----C---chhHHHHHhcccHHHHHHhh-c-CCCHHHH
Q 041050 218 ELIMAQGG--ISLLSTTAADAE---DPQTLRMVAGAIANLCG----N---DKLQMKLRSEGGIRALLGMV-R-CGHPDVL 283 (408)
Q Consensus 218 ~~i~~~g~--i~~Lv~lL~~~~---~~~v~~~a~~aL~nL~~----~---~~~~~~i~~~g~l~~L~~lL-~-~~~~~v~ 283 (408)
..+..... +...+..+..+. +..++..++..+.|++. + .+.+.. .+..+...+ . ..|+++.
T Consensus 145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~-----ll~~i~~~~~~~~~d~Ea~ 219 (268)
T PF08324_consen 145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE-----LLSSIIEVLSREESDEEAL 219 (268)
T ss_dssp HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH-----HHHHHHHHCHCCHTSHHHH
T ss_pred HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-----HHHHHHHHhccccCCHHHH
Confidence 88887654 333333332322 67899999999999971 1 111111 244455533 3 3789999
Q ss_pred HHHHHHHHHhhc
Q 041050 284 SQVARGIANFAK 295 (408)
Q Consensus 284 ~~a~~aL~nL~~ 295 (408)
..++-|+++|..
T Consensus 220 ~R~LvAlGtL~~ 231 (268)
T PF08324_consen 220 YRLLVALGTLLS 231 (268)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999999985
No 183
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=90.88 E-value=5.4 Score=41.73 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=59.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050 143 HKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM 221 (408)
Q Consensus 143 ~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~ 221 (408)
..++...+ ++...+..|+..+..... -|+.++. ++..++.|+. +++..||..|+..|..+|.+.++...++
T Consensus 26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcE-Ded~~iR~~aik~lp~~ck~~~~~v~kv- 97 (556)
T PF05918_consen 26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCE-DEDVQIRKQAIKGLPQLCKDNPEHVSKV- 97 (556)
T ss_dssp HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT--SSHHHHHHHHHHGGGG--T--T-HHHH-
T ss_pred HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHh-cccHHHHHHHHHhHHHHHHhHHHHHhHH-
Confidence 44455544 467788888888876655 6777654 4677889998 5789999999999999999867777776
Q ss_pred hcCcHHHHHHHhhcCCCHHHHHHHHHHHH
Q 041050 222 AQGGISLLSTTAADAEDPQTLRMVAGAIA 250 (408)
Q Consensus 222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~ 250 (408)
+..|+.+| .++++.-...+-.+|.
T Consensus 98 ----aDvL~QlL-~tdd~~E~~~v~~sL~ 121 (556)
T PF05918_consen 98 ----ADVLVQLL-QTDDPVELDAVKNSLM 121 (556)
T ss_dssp ----HHHHHHHT-T---HHHHHHHHHHHH
T ss_pred ----HHHHHHHH-hcccHHHHHHHHHHHH
Confidence 46788887 4566554444444443
No 184
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.65 E-value=1.9 Score=45.86 Aligned_cols=124 Identities=20% Similarity=0.190 Sum_probs=74.3
Q ss_pred HHHHHHh-hcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050 142 LHKILSL-LESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 142 v~~Ll~l-L~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
|..|++. ++..+.+||+.|+-+|+-+.+.+.. .+|..+++|..+.++-||..|+.+|+--|.. ..++..|
T Consensus 556 ir~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAG-tG~~eAi 626 (929)
T KOG2062|consen 556 IRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAG-TGLKEAI 626 (929)
T ss_pred HHHhhcccccccchHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcC-CCcHHHH
Confidence 5556655 5678899999999999888774322 3677788888778899999999999888777 5444433
Q ss_pred HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCchhHHHHHhcccHHHHHHhhcCCCHHHH
Q 041050 221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLC--GNDKLQMKLRSEGGIRALLGMVRCGHPDVL 283 (408)
Q Consensus 221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~ 283 (408)
..|-.+. +++..=|+..|+-+++-+. .++...-.. .|..+.+.+.+..++.+..
T Consensus 627 ------~lLepl~-~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhEd~~ 682 (929)
T KOG2062|consen 627 ------NLLEPLT-SDPVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHEDGM 682 (929)
T ss_pred ------HHHhhhh-cChHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhhHHH
Confidence 2222232 3233235666666666553 333222222 1233345555544444443
No 185
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.51 E-value=5.4 Score=40.37 Aligned_cols=108 Identities=20% Similarity=0.176 Sum_probs=75.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh-------------HHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHH
Q 041050 183 LSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN-------------QELIMAQGGISLLSTTAADAEDPQTLRMVAGAI 249 (408)
Q Consensus 183 i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~-------------~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL 249 (408)
+..|+.+|. ++++...|+.++.-|..+.+.. +++++.. .+|.|++-....++ ..+..-..+|
T Consensus 273 ~~~L~~lL~---~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~-~~p~L~~~~~~~~~-~~k~~yL~AL 347 (415)
T PF12460_consen 273 LDKLLELLS---SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ-VLPKLLEGFKEADD-EIKSNYLTAL 347 (415)
T ss_pred HHHHHHHhC---ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH-HHHHHHHHHhhcCh-hhHHHHHHHH
Confidence 667888887 3677888888888887773322 3333332 46777777644333 4777778889
Q ss_pred HHHhCCchhHHHHHh-cccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 250 ANLCGNDKLQMKLRS-EGGIRALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 250 ~nL~~~~~~~~~i~~-~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
+++..+-...-.+-+ ...+|.|++-|..+|++++..+..+|..+..
T Consensus 348 s~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 348 SHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILE 394 (415)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 988854433333323 3478888899999999999999999999985
No 186
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=90.50 E-value=7.5 Score=42.41 Aligned_cols=153 Identities=14% Similarity=0.100 Sum_probs=103.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHh-hcCCCHHHHHHHHHHHHHHhCCchhHHH
Q 041050 183 LSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTA-ADAEDPQTLRMVAGAIANLCGNDKLQMK 261 (408)
Q Consensus 183 i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~v~~~a~~aL~nL~~~~~~~~~ 261 (408)
+..|+++... ...++....+.+|+..+.. +.--..-++....|.++.+. ..++||.+...+--++-.++....+..-
T Consensus 532 ld~L~qlas~-~s~evl~llmE~Ls~vv~~-dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~ 609 (1005)
T KOG2274|consen 532 LDGLLQLASK-SSDEVLVLLMEALSSVVKL-DPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP 609 (1005)
T ss_pred HHHHHHHccc-ccHHHHHHHHHHHHHHhcc-ChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc
Confidence 4556666653 4567888889999988887 43444445556677666554 4678888888888888777765555544
Q ss_pred HHhcccHHHHHHhhcCCC----HHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHh-ccC
Q 041050 262 LRSEGGIRALLGMVRCGH----PDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQN-ANN 336 (408)
Q Consensus 262 i~~~g~l~~L~~lL~~~~----~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~l-L~~ 336 (408)
+.+ ..+|.+++.+..++ +.....++-.|..+.+. +.++..+.++. -+.|++.+. +++
T Consensus 610 m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~----------------tp~pL~~~l~~-~~FpaVak~tlHs 671 (1005)
T KOG2274|consen 610 MQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRN----------------TPSPLPNLLIC-YAFPAVAKITLHS 671 (1005)
T ss_pred hHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhc----------------CCCCccHHHHH-HHhHHhHhheeec
Confidence 443 57888999997655 66667777777766652 22223333443 467777664 588
Q ss_pred CCHHHHHHHHHHHHHHccC
Q 041050 337 EAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 337 ~~~~v~~~a~~aL~~La~~ 355 (408)
++..+-.++.-+|..+...
T Consensus 672 dD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 672 DDHETLQNATECLRALISV 690 (1005)
T ss_pred CChHHHHhHHHHHHHHHhc
Confidence 8888988888888887665
No 187
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=90.30 E-value=13 Score=38.74 Aligned_cols=211 Identities=14% Similarity=0.112 Sum_probs=124.0
Q ss_pred CCCHHHHHHHHHHHHH-HcCCchhHHHHHHhCC----HHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCc
Q 041050 151 SEDANVRIHAVKVVAN-LAAEEANQEKIVEAGG----LSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGG 225 (408)
Q Consensus 151 s~~~~v~~~A~~aL~n-La~~~~~~~~i~~~g~----i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~ 225 (408)
.++..+|-.|+.+|.+ +-+ .+..+..++- ++..+..-. +++.+++..|.+.+..+-+-.-+.-+.+++.--
T Consensus 189 et~~avRLaaL~aL~dsl~f---v~~nf~~E~erNy~mqvvceatq-~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL 264 (858)
T COG5215 189 ETTSAVRLAALKALMDSLMF---VQGNFCYEEERNYFMQVVCEATQ-GNDEELQHAAFGCLNKIMMLYYKFMQSYMENAL 264 (858)
T ss_pred CchHHHHHHHHHHHHHHHHH---HHHhhcchhhhchhheeeehhcc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888876 322 1111111111 223333344 478899999999998776643444445555543
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhCCc-hhHHHH--------H--------hcccHHHHHHhhcC--C-----CHH
Q 041050 226 ISLLSTTAADAEDPQTLRMVAGAIANLCGND-KLQMKL--------R--------SEGGIRALLGMVRC--G-----HPD 281 (408)
Q Consensus 226 i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~-~~~~~i--------~--------~~g~l~~L~~lL~~--~-----~~~ 281 (408)
...+...+ .+.+..+...++..-..+|..+ +.-..+ . -.+.+|.|+++|.. + |-.
T Consensus 265 ~alt~~~m-ks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn 343 (858)
T COG5215 265 AALTGRFM-KSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWN 343 (858)
T ss_pred HHHHHHHh-cCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 34444554 6677788888888777777211 110000 1 12367888888843 2 233
Q ss_pred HHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc--hhH
Q 041050 282 VLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE--VNA 359 (408)
Q Consensus 282 v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~--~~~ 359 (408)
+-..|..||.-++. ...+.|.+ .++..+-+.+++++..-|..++.+++.+..++ .+.
T Consensus 344 ~smaA~sCLqlfaq--------------------~~gd~i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~l 402 (858)
T COG5215 344 PSMAASSCLQLFAQ--------------------LKGDKIMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCL 402 (858)
T ss_pred hhhhHHHHHHHHHH--------------------HhhhHhHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHH
Confidence 56667777777763 11112222 26667777889999999999999999998874 344
Q ss_pred HHHHhCCcHHHHHHHHhcCCHHHHHHHHH
Q 041050 360 REMISGGALWELVRISRDCSREDIRSLAH 388 (408)
Q Consensus 360 ~~l~~~g~i~~L~~ll~~~~~~~~~~~A~ 388 (408)
+.++. .++|-+..+..++.-......|.
T Consensus 403 T~~V~-qalp~i~n~m~D~~l~vk~ttAw 430 (858)
T COG5215 403 TKIVP-QALPGIENEMSDSCLWVKSTTAW 430 (858)
T ss_pred HhhHH-hhhHHHHHhcccceeehhhHHHH
Confidence 55552 35666666666444333333333
No 188
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=90.01 E-value=9.5 Score=37.91 Aligned_cols=93 Identities=22% Similarity=0.230 Sum_probs=67.0
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHH-hCCchhHHH
Q 041050 183 LSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANL-CGNDKLQMK 261 (408)
Q Consensus 183 i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL-~~~~~~~~~ 261 (408)
+..++.=+.++.+..+|+.++--|+.-+.+ +..+..+...|.+..++..+...++..+...++.++..+ +.+...-..
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 445555555556778999999999999999 999999999999999999985544443444444444444 455555555
Q ss_pred HHhcccHHHHHHhhc
Q 041050 262 LRSEGGIRALLGMVR 276 (408)
Q Consensus 262 i~~~g~l~~L~~lL~ 276 (408)
+.+.+.+..++.++.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 556677777788776
No 189
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.65 E-value=3.8 Score=43.49 Aligned_cols=128 Identities=16% Similarity=0.107 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHH
Q 041050 240 QTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRS 319 (408)
Q Consensus 240 ~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~ 319 (408)
.+.+-++..+..|=..+..-+ ++ .|.+..|++-..+++..|+..++..|+-+..| ...+.
T Consensus 61 RIl~fla~fv~sl~q~d~e~D-lV-~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~------------------~~eid 120 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKEED-LV-AGTFYHLLRGTESKDKKVRFRVLQILALLSDE------------------NAEID 120 (892)
T ss_pred HHHHHHHHHHHhhhccCchhh-HH-HHHHHHHHhcccCcchhHHHHHHHHHHHHhcc------------------ccccC
Confidence 355555555555542221111 32 35666677777889999999999999999841 11111
Q ss_pred HHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 041050 320 LLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHRTL 391 (408)
Q Consensus 320 ~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L 391 (408)
.-+-.+....+..-+....+.||.+|+.+|+.+-.++.+- +..++..+..+++..+.+.+|.+|.-.+
T Consensus 121 d~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de----e~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 121 DDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE----ECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC----cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 1122356667777788889999999999999998543221 2335677888888777777888888433
No 190
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.36 E-value=5 Score=41.79 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHH
Q 041050 241 TLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRS 319 (408)
Q Consensus 241 v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~ 319 (408)
+.+-..+.+...- .+|+. ..++ .|.+..+++-+.+++..|+..++..|+-+..|-.+ . .
T Consensus 67 il~fl~~f~~Y~~~~dpeg-~~~V-~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-----------------I-D 126 (885)
T COG5218 67 ILSFLKRFFEYDMPDDPEG-EELV-AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-----------------I-D 126 (885)
T ss_pred HHHHHHHHHHhcCCCChhh-hHHH-HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-----------------H-H
Confidence 3434444444333 45555 2333 36677788888899999999999999998852111 1 1
Q ss_pred HHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHH-HHHhc
Q 041050 320 LLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAH-RTLSS 393 (408)
Q Consensus 320 ~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~-~~L~~ 393 (408)
...-.|.+..|..-+-..++-||.+|+.+|+.+-..+.+-. ......|+.+++....+.+|.+|. .+...
T Consensus 127 e~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee----n~~~n~l~~~vqnDPS~EVRr~allni~vd 197 (885)
T COG5218 127 EVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE----NRIVNLLKDIVQNDPSDEVRRLALLNISVD 197 (885)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH----HHHHHHHHHHHhcCcHHHHHHHHHHHeeeC
Confidence 12334777888888888899999999999999875533321 113446777787666667887777 44433
No 191
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=88.42 E-value=5.1 Score=43.75 Aligned_cols=154 Identities=12% Similarity=0.061 Sum_probs=100.0
Q ss_pred HHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhc-CcHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 041050 174 QEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQ-GGISLLSTTAADAEDPQTLRMVAGAIANL 252 (408)
Q Consensus 174 ~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL 252 (408)
+++++.. .+|.|++... ..+...+-.=..+|.++-.+-| -+..+-+. .-.|.|++.| +.+|+.++..+..++.-+
T Consensus 861 kQRfF~~-ivP~l~~~~~-t~~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~ 936 (1030)
T KOG1967|consen 861 KQRFFCD-IVPILVSKFE-TAPGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPML 936 (1030)
T ss_pred HHHHHHh-hHHHHHHHhc-cCCccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHH
Confidence 4555543 6899999888 4566667777778888777623 33332222 2356677777 678889988999988877
Q ss_pred h-CCchhHHHHHhcccHHHHHHhhcCCC---HHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHH
Q 041050 253 C-GNDKLQMKLRSEGGIRALLGMVRCGH---PDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALP 328 (408)
Q Consensus 253 ~-~~~~~~~~i~~~g~l~~L~~lL~~~~---~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~ 328 (408)
. ..+.....-.+ -.+|.++.+-.+++ --|+..|..+|..|+. ..|...-.-....++.
T Consensus 937 l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~-----------------~~P~~~l~~fr~~Vl~ 998 (1030)
T KOG1967|consen 937 LTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTR-----------------RLPTKSLLSFRPLVLR 998 (1030)
T ss_pred HHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhc-----------------cCCCcccccccHHHHH
Confidence 6 33333332222 34566666665544 4577888899999885 2222222233456888
Q ss_pred HHHHhccCCCHHHHHHHHHHH
Q 041050 329 WIVQNANNEAAPIRRHIELAL 349 (408)
Q Consensus 329 ~Lv~lL~~~~~~v~~~a~~aL 349 (408)
.|++.|.++..-||++|+.+=
T Consensus 999 al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 999 ALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred HhhhccCcHHHHHHHHHHHHh
Confidence 999999888888899988653
No 192
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=88.18 E-value=23 Score=37.54 Aligned_cols=160 Identities=13% Similarity=0.092 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHHHhccCChhhHHHHHh---cCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHH
Q 041050 195 DETIRRVAAGAIANLAMNAEANQELIMA---QGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRAL 271 (408)
Q Consensus 195 ~~~v~~~A~~aL~nLa~~~~~~~~~i~~---~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L 271 (408)
+.+++--|+.+|.-+..++..+-..+.. ...+..++..+. -++.-...++++|+|+..++.+++.+... ...+
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~--~~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~~i 632 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN--ADPANQLLVVRCLANLFSNPAGRELFMSR--LESI 632 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc--cchhHHHHHHHHHHHhccCHHHHHHHHHH--HHHH
Confidence 5566666777777666663322222221 223334444432 45677889999999999889998888764 3323
Q ss_pred HHhh----cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhc----cC-CCHHHH
Q 041050 272 LGMV----RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNA----NN-EAAPIR 342 (408)
Q Consensus 272 ~~lL----~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL----~~-~~~~v~ 342 (408)
...+ ..++..++...+....|++.+ ..+ ++. +.+..+.+...+ .. ++.+..
T Consensus 633 ~~~~~~~~s~~~knl~ia~atlaln~sv~----l~~---------~~~-------~~~~~~~l~~ai~~~~e~~~d~EA~ 692 (745)
T KOG0301|consen 633 LDPVIEASSLSNKNLQIALATLALNYSVL----LIQ---------DNE-------QLEGKEVLLSAISTLLEPVDDLEAI 692 (745)
T ss_pred hhhhhhhhcccchhHHHHHHHHHHHHHHH----HHh---------ccc-------ccchHHHHHHHHHhhcccchhHHHH
Confidence 3222 234455665555555555531 000 111 123333332222 21 234455
Q ss_pred HHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcC
Q 041050 343 RHIELALCHLAQHEVNAREMISGGALWELVRISRDC 378 (408)
Q Consensus 343 ~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~ 378 (408)
-....||++|+..+.....+...-.+..+..-+++.
T Consensus 693 yR~l~AlgtL~t~~~~~~~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 693 YRLLVALGTLMTVDASVIQLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred HHHHHHHHhhccccHHHHHHHHhcCHHHHHHHHHHh
Confidence 667889999999999999998877788777766654
No 193
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.02 E-value=33 Score=36.02 Aligned_cols=106 Identities=21% Similarity=0.265 Sum_probs=73.6
Q ss_pred hcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH
Q 041050 139 QVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE 218 (408)
Q Consensus 139 ~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~ 218 (408)
+|.+..++..+.+.+..+|..++..|+-++..-.-....+-.|.+.+|..-+- +..+.||..|+.+|+.+-.. ..+-+
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~-DRE~~VR~eAv~~L~~~Qe~-~~nee 167 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLF-DREKAVRREAVKVLCYYQEM-ELNEE 167 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHhc-cCChH
Confidence 34566777778899999999999999988774333333444456777777766 35789999999999877654 33333
Q ss_pred HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 041050 219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC 253 (408)
Q Consensus 219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~ 253 (408)
..+ ...|+.++...++.+|++.| +.|+.
T Consensus 168 n~~----~n~l~~~vqnDPS~EVRr~a---llni~ 195 (885)
T COG5218 168 NRI----VNLLKDIVQNDPSDEVRRLA---LLNIS 195 (885)
T ss_pred HHH----HHHHHHHHhcCcHHHHHHHH---HHHee
Confidence 332 33667777777777888855 55665
No 194
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=87.46 E-value=2.1 Score=39.69 Aligned_cols=81 Identities=27% Similarity=0.276 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHhCCH-------HHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH-HHhcCcH
Q 041050 155 NVRIHAVKVVANLAAEEANQEKIVEAGGL-------SSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL-IMAQGGI 226 (408)
Q Consensus 155 ~v~~~A~~aL~nLa~~~~~~~~i~~~g~i-------~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~-i~~~g~i 226 (408)
.-|+.|+.+|+.|+-.+.|.+-+...+-. ..|+.++...+++..|+.|+-.|.||+..+...... -.+.+.|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 46899999999999988887777666643 345666666678999999999999999985555544 4578899
Q ss_pred HHHHHHhhc
Q 041050 227 SLLSTTAAD 235 (408)
Q Consensus 227 ~~Lv~lL~~ 235 (408)
..|+.++..
T Consensus 219 ~~Li~FiE~ 227 (257)
T PF12031_consen 219 SHLIAFIED 227 (257)
T ss_pred HHHHHHHHH
Confidence 999999843
No 195
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=87.22 E-value=34 Score=34.23 Aligned_cols=186 Identities=12% Similarity=0.142 Sum_probs=116.0
Q ss_pred HHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcC------C-------------------CC--------HHHHHHHHHH
Q 041050 160 AVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRS------F-------------------ED--------ETIRRVAAGA 205 (408)
Q Consensus 160 A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~------~-------------------~~--------~~v~~~A~~a 205 (408)
|+++|-.+.. .+..-..+.+.+|+..++..+.. . .+ ....+.-+.+
T Consensus 4 av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk~ 83 (379)
T PF06025_consen 4 AVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLKF 83 (379)
T ss_pred HHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHHH
Confidence 4555555554 44455566777788777666631 0 00 1233334455
Q ss_pred HHHhcc-C--ChhhHHHHHhcCcHH-HHHHHhhcCC--CHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhc-C
Q 041050 206 IANLAM-N--AEANQELIMAQGGIS-LLSTTAADAE--DPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVR-C 277 (408)
Q Consensus 206 L~nLa~-~--~~~~~~~i~~~g~i~-~Lv~lL~~~~--~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~-~ 277 (408)
+..+.. . ..+.-..+++.+.++ .|..++.+.. .+.+...++.++..+. .+|..-..+.+.|.++.++..+. .
T Consensus 84 l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~ 163 (379)
T PF06025_consen 84 LSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAK 163 (379)
T ss_pred HHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhcc
Confidence 555555 2 122333344534444 4445554332 3678999999999998 66777788889999999998776 3
Q ss_pred ---CCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCH-------HHHHHHHH
Q 041050 278 ---GHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAA-------PIRRHIEL 347 (408)
Q Consensus 278 ---~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~-------~v~~~a~~ 347 (408)
++.++....-.++..|| -|..+.+.+.+.+.++.+.+...+.+. ++-...-.
T Consensus 164 ~i~~s~e~l~~lP~~l~Aic------------------LN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~ 225 (379)
T PF06025_consen 164 GILPSSEVLTSLPNVLSAIC------------------LNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGN 225 (379)
T ss_pred CCCCcHHHHHHHHHHHhHHh------------------cCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHH
Confidence 45666666667777777 489999999999999999998876522 23333344
Q ss_pred HHHHHccCchhHHHHH
Q 041050 348 ALCHLAQHEVNAREMI 363 (408)
Q Consensus 348 aL~~La~~~~~~~~l~ 363 (408)
.+-.|..+.+..+..+
T Consensus 226 ~~DEL~RH~p~Lk~~i 241 (379)
T PF06025_consen 226 SFDELMRHHPSLKPDI 241 (379)
T ss_pred HHHHHHccCHHHHHHH
Confidence 4455666644444433
No 196
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=87.17 E-value=15 Score=39.05 Aligned_cols=173 Identities=17% Similarity=0.113 Sum_probs=92.5
Q ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC-hhhHHHHHhcCcHHHHHHHhh---cCCCHHHHHHHHHHHHHHh----
Q 041050 182 GLSSLLMLLRSFEDETIRRVAAGAIANLAMNA-EANQELIMAQGGISLLSTTAA---DAEDPQTLRMVAGAIANLC---- 253 (408)
Q Consensus 182 ~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~~i~~~g~i~~Lv~lL~---~~~~~~v~~~a~~aL~nL~---- 253 (408)
++..+..++.+..-. - ..|..+|..|.... ....+. +..+..++. ...++.+...++-+++.|.
T Consensus 396 av~~i~~~I~~~~~~-~-~ea~~~l~~l~~~~~~Pt~e~------l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c 467 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLT-D-DEAAQLLASLPFHVRRPTEEL------LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYC 467 (618)
T ss_dssp HHHHHHHHHHTT-S--H-HHHHHHHHHHHHT-----HHH------HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCC-H-HHHHHHHHHHHhhcCCCCHHH------HHHHHHHHhCccccCChhHHHHHHHHHHHHhCcee
Confidence 366667777642222 1 22445555554441 122222 233344432 1234566666666666664
Q ss_pred CCc------hhHHHHHhcccHHHHHHhhc----CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHh
Q 041050 254 GND------KLQMKLRSEGGIRALLGMVR----CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIE 323 (408)
Q Consensus 254 ~~~------~~~~~i~~~g~l~~L~~lL~----~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~ 323 (408)
.+. ......+....++.+...+. ..+.+-+..++.||+|+..
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~---------------------------- 519 (618)
T PF01347_consen 468 VNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH---------------------------- 519 (618)
T ss_dssp TT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------------------------
T ss_pred ecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------------------------
Confidence 221 11112222345555665553 4566777788899999852
Q ss_pred cCcHHHHHHhccCC---CHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCC-HHHHHHHHH-HHHhccHhh
Q 041050 324 DGALPWIVQNANNE---AAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCS-REDIRSLAH-RTLSSSLTF 397 (408)
Q Consensus 324 ~g~l~~Lv~lL~~~---~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~-~~~~~~~A~-~~L~~~~~~ 397 (408)
...++.|.+++... +..+|..|+++|..++...+.. +.+.|..+..... +.++|-+|. -++.++|+.
T Consensus 520 ~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~-------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~ 591 (618)
T PF01347_consen 520 PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK-------VREILLPIFMNTTEDPEVRIAAYLILMRCNPSP 591 (618)
T ss_dssp GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH-------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT---H
T ss_pred chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH-------HHHHHHHHhcCCCCChhHHHHHHHHHHhcCCCH
Confidence 24788888888766 7889999999999987764432 3566777776544 345888888 566666764
No 197
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=87.14 E-value=9 Score=41.95 Aligned_cols=181 Identities=16% Similarity=0.129 Sum_probs=109.1
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhccCChh-------------hHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHH
Q 041050 184 SSLLMLLRSFEDETIRRVAAGAIANLAMNAEA-------------NQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIA 250 (408)
Q Consensus 184 ~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~-------------~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~ 250 (408)
..++.+|+ ++.+-..++.++.-+..|++. .+++++. ..+|.|+.... +.+...+..-..+|.
T Consensus 818 ~klld~Ls---~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~-~ivP~l~~~~~-t~~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 818 EKLLDLLS---GPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFC-DIVPILVSKFE-TAPGSQKHNYLEALS 892 (1030)
T ss_pred HHHHHhcC---CccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHH-hhHHHHHHHhc-cCCccchhHHHHHHH
Confidence 34555555 234444555666655555432 2333333 36788888874 455566777778888
Q ss_pred HHhCCchhHHHHHh-cccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHH
Q 041050 251 NLCGNDKLQMKLRS-EGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPW 329 (408)
Q Consensus 251 nL~~~~~~~~~i~~-~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~ 329 (408)
++-++-.-+..+=+ ...+|.|++-|..+|+.++-.+..++..+.. .+. .....=. .-++|.
T Consensus 893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~-~~~----------------tL~t~~~-~Tlvp~ 954 (1030)
T KOG1967|consen 893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLT-ESE----------------TLQTEHL-STLVPY 954 (1030)
T ss_pred HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHH-hcc----------------ccchHHH-hHHHHH
Confidence 88765444333322 3467778888899999999999999988874 111 1111111 136777
Q ss_pred HHHhccCCC---HHHHHHHHHHHHHHccC-chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHH
Q 041050 330 IVQNANNEA---APIRRHIELALCHLAQH-EVNAREMISGGALWELVRISRDCSREDIRSLAH 388 (408)
Q Consensus 330 Lv~lL~~~~---~~v~~~a~~aL~~La~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~ 388 (408)
++.+-.+.+ ..+|..|..+|..|+.. +...-.-.+-..+..|+..+.++-+ -+|+.|.
T Consensus 955 lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKR-lVR~eAv 1016 (1030)
T KOG1967|consen 955 LLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKR-LVRKEAV 1016 (1030)
T ss_pred HHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHH-HHHHHHH
Confidence 777776654 56899999999999984 4332222344456666666663322 2555554
No 198
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=86.90 E-value=9.5 Score=27.49 Aligned_cols=59 Identities=31% Similarity=0.481 Sum_probs=45.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 041050 22 EIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLT 94 (408)
Q Consensus 22 ~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 94 (408)
+|..-|+-|+..+....+|+++.|... ....++|++-..+...|+.++..|+..+.++.
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n--------------~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSAN--------------LAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 366778999999999999998877663 23556777777888888888888888776654
No 199
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=86.59 E-value=14 Score=37.01 Aligned_cols=155 Identities=15% Similarity=0.011 Sum_probs=97.0
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh---------cCCCHHHHHHHHHHHHHHh-
Q 041050 184 SSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAA---------DAEDPQTLRMVAGAIANLC- 253 (408)
Q Consensus 184 ~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~---------~~~~~~v~~~a~~aL~nL~- 253 (408)
..++.+|....+.+.+...+..+.-|+.+ ...-+-+...--+..|+.+.. ...|..+...+..+|+|+.
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRd-k~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf 126 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRD-KDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF 126 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhcc-ccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence 45778887666777888888999999998 433222222222233333321 1234578889999999999
Q ss_pred CCchhHHHHHhcccHHHHHHhhcC-----CCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHH-HhcCcH
Q 041050 254 GNDKLQMKLRSEGGIRALLGMVRC-----GHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLL-IEDGAL 327 (408)
Q Consensus 254 ~~~~~~~~i~~~g~l~~L~~lL~~-----~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i-~~~g~l 327 (408)
.+...|+...+......+.+.+.. --.++...=.+.|.-++. -.++.|.++ .+.+++
T Consensus 127 ~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLfllta-----------------le~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 127 HSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTA-----------------LETDHRSQLIAELLGL 189 (532)
T ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH-----------------hhHHHHHHHHHHhccc
Confidence 777888888887777777765521 122344444566666654 334444444 466777
Q ss_pred HHHHHhccCC---------------CHHHHHHHHHHHHHHccCc
Q 041050 328 PWIVQNANNE---------------AAPIRRHIELALCHLAQHE 356 (408)
Q Consensus 328 ~~Lv~lL~~~---------------~~~v~~~a~~aL~~La~~~ 356 (408)
+.+.+.+.+. +.+...++..++.|++.+.
T Consensus 190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 7777766431 2345667888889988774
No 200
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=86.47 E-value=46 Score=34.94 Aligned_cols=67 Identities=27% Similarity=0.276 Sum_probs=43.6
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC
Q 041050 144 KILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNA 213 (408)
Q Consensus 144 ~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~ 213 (408)
.|-..|++.-+-+...+++++..++... .....+++ .+..|-.+|.+ .....|-.|+.+|..|++-.
T Consensus 268 fL~~wls~k~emV~lE~Ar~v~~~~~~n-v~~~~~~~-~vs~L~~fL~s-~rv~~rFsA~Riln~lam~~ 334 (898)
T COG5240 268 FLNSWLSDKFEMVFLEAARAVCALSEEN-VGSQFVDQ-TVSSLRTFLKS-TRVVLRFSAMRILNQLAMKY 334 (898)
T ss_pred HHHHHhcCcchhhhHHHHHHHHHHHHhc-cCHHHHHH-HHHHHHHHHhc-chHHHHHHHHHHHHHHHhhC
Confidence 3335555666778888888888877622 12222322 46677777774 46677778889999998864
No 201
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=86.30 E-value=9.1 Score=39.82 Aligned_cols=99 Identities=14% Similarity=0.114 Sum_probs=67.5
Q ss_pred cHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh-cCCCHHHHHHHHHHHHHhhccchhhhhH
Q 041050 225 GISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV-RCGHPDVLSQVARGIANFAKCESRAATQ 303 (408)
Q Consensus 225 ~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL-~~~~~~v~~~a~~aL~nL~~~~~~~~~~ 303 (408)
.+..|+..--++.+.++++.|+-+|.-+|.++. ..+.-.+++| .+.++.|+.-++-+|.-.|.
T Consensus 552 vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiaca-------- 615 (926)
T COG5116 552 VVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHNFHVRAGVAVALGIACA-------- 615 (926)
T ss_pred hHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhc--------
Confidence 444555442244556899999999998884432 3345567777 57788899888888888775
Q ss_pred HHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 304 VRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 304 ~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
|.-+. -++..|-.++....+-||+.|+.++..+...
T Consensus 616 ---------g~G~~-------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q 651 (926)
T COG5116 616 ---------GTGDK-------VATDILEALMYDTNDFVRQSAMIAVGMILMQ 651 (926)
T ss_pred ---------CCccH-------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhh
Confidence 32221 2455666777777888999999998886643
No 202
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.28 E-value=54 Score=35.52 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=18.9
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 271 LLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 271 L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
+++.|.++|-++++.+......|+.
T Consensus 322 vLrvLss~dldvr~Ktldi~ldLvs 346 (948)
T KOG1058|consen 322 VLRVLSSPDLDVRSKTLDIALDLVS 346 (948)
T ss_pred HHHHcCcccccHHHHHHHHHHhhhh
Confidence 5566778888888888877777763
No 203
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=85.88 E-value=5.8 Score=36.44 Aligned_cols=141 Identities=12% Similarity=0.039 Sum_probs=91.1
Q ss_pred HHHHHHHhccCChhhHHHHHhcCcHHHHHHHh----hcCCCHHHHHHHHHHHHHHhCC--chhHHHHHhcccHHHHHHhh
Q 041050 202 AAGAIANLAMNAEANQELIMAQGGISLLSTTA----ADAEDPQTLRMVAGAIANLCGN--DKLQMKLRSEGGIRALLGMV 275 (408)
Q Consensus 202 A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~v~~~a~~aL~nL~~~--~~~~~~i~~~g~l~~L~~lL 275 (408)
|+..|--++.+ |+.+..++++..--.|...| +++..+.++..++++|+.|..| +.....+.....+|..++++
T Consensus 120 aL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIm 198 (315)
T COG5209 120 ALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIM 198 (315)
T ss_pred HHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHH
Confidence 55566677888 99999998886432222332 2344566888999999999944 45667777888999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHh--------cCcHHHHHH-hccCCCHHHHHHHH
Q 041050 276 RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIE--------DGALPWIVQ-NANNEAAPIRRHIE 346 (408)
Q Consensus 276 ~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~--------~g~l~~Lv~-lL~~~~~~v~~~a~ 346 (408)
..++..-+.-++..+.-+- |++.+-+-+.+ ..++..++. +...+...+.+++.
T Consensus 199 e~gSElSktvaifI~qkil------------------~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~i 260 (315)
T COG5209 199 ELGSELSKTVAIFIFQKIL------------------GDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAI 260 (315)
T ss_pred HhhhHHHHHHHHHHHHHHh------------------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8776555555555555554 33333322221 123333333 44556778888888
Q ss_pred HHHHHHccCchhHHH
Q 041050 347 LALCHLAQHEVNARE 361 (408)
Q Consensus 347 ~aL~~La~~~~~~~~ 361 (408)
.+-..|+.++..+..
T Consensus 261 RcYlRLsd~p~aR~l 275 (315)
T COG5209 261 RCYLRLSDKPHARAL 275 (315)
T ss_pred HHheeecCCHhHHHH
Confidence 888888877655433
No 204
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.64 E-value=15 Score=39.42 Aligned_cols=209 Identities=13% Similarity=0.144 Sum_probs=111.4
Q ss_pred hhhhhhcCCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHH
Q 041050 120 SQFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIR 199 (408)
Q Consensus 120 ~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~ 199 (408)
+.|+..+... ++++. -+|.+...|.+.+.-||.+|.-++..+-..- ..++ ..+=..+-..|....|+.-+
T Consensus 120 LRFLckLkE~-----ELlep-l~p~IracleHrhsYVRrNAilaifsIyk~~---~~L~-pDapeLi~~fL~~e~DpsCk 189 (948)
T KOG1058|consen 120 LRFLCKLKEP-----ELLEP-LMPSIRACLEHRHSYVRRNAILAIFSIYKNF---EHLI-PDAPELIESFLLTEQDPSCK 189 (948)
T ss_pred hhhhhhcCcH-----HHhhh-hHHHHHHHHhCcchhhhhhhheeehhHHhhh---hhhc-CChHHHHHHHHHhccCchhH
Confidence 4555555443 33333 2677778888999999999998888764320 1111 11222233345545677777
Q ss_pred HHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh--cCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhc
Q 041050 200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAA--DAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVR 276 (408)
Q Consensus 200 ~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~ 276 (408)
+.|.-.|...-.. . ++..|..... .+-++.++...+..|...| .+|..+... ++.+..+|.
T Consensus 190 RNAFi~L~~~D~E---r--------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~-----i~~i~~lL~ 253 (948)
T KOG1058|consen 190 RNAFLMLFTTDPE---R--------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARY-----IRCIYNLLS 253 (948)
T ss_pred HHHHHHHHhcCHH---H--------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHH-----HHHHHHHHh
Confidence 7775555444222 1 2222222221 1123455666666777666 455544443 445777777
Q ss_pred CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhcc-CChhh-HHHH--------------HhcCcHHHHHHhccCCCHH
Q 041050 277 CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTAT-GVKSG-RSLL--------------IEDGALPWIVQNANNEAAP 340 (408)
Q Consensus 277 ~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~-~~~~~-~~~i--------------~~~g~l~~Lv~lL~~~~~~ 340 (408)
+.++.|..+|+++|-+|+ .++.+......+++.++ .-+++ ...| +=.|.+-.++..+.+++-+
T Consensus 254 stssaV~fEaa~tlv~lS-~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dld 332 (948)
T KOG1058|consen 254 STSSAVIFEAAGTLVTLS-NDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLD 332 (948)
T ss_pred cCCchhhhhhcceEEEcc-CCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCccccc
Confidence 767777777777777766 34433222211111100 00000 0000 0124455667788888888
Q ss_pred HHHHHHHHHHHHccC
Q 041050 341 IRRHIELALCHLAQH 355 (408)
Q Consensus 341 v~~~a~~aL~~La~~ 355 (408)
+|..+......|+..
T Consensus 333 vr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 333 VRSKTLDIALDLVSS 347 (948)
T ss_pred HHHHHHHHHHhhhhh
Confidence 988888777777665
No 205
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.42 E-value=79 Score=36.98 Aligned_cols=187 Identities=14% Similarity=0.105 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHh-ccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHH
Q 041050 183 LSSLLMLLRSFEDETIRRVAAGAIANL-AMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMK 261 (408)
Q Consensus 183 i~~L~~lL~~~~~~~v~~~A~~aL~nL-a~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~ 261 (408)
||.|...=. ++++.|+. |+.-|||. ..++....+... ...+.-|+.-+ .+..=.+|+.+|-||..|-....+-+.
T Consensus 1000 IPrLyRY~y-DP~~~Vq~-aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~l-t~kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen 1000 IPRLYRYQY-DPDKKVQD-AMTSIWNALITDSKKVVDEYL-NEILDELLVNL-TSKEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred hHHHhhhcc-CCcHHHHH-HHHHHHHHhccChHHHHHHHH-HHHHHHHHHhc-cchhHHHHHHHHHHHHHHHcCCChHHH
Confidence 555555444 45677776 66667764 444222222222 22344444443 344557999999999999843333222
Q ss_pred HHhcccHHHHHH----hhcCCCHHHHHHHH---HHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHH--
Q 041050 262 LRSEGGIRALLG----MVRCGHPDVLSQVA---RGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQ-- 332 (408)
Q Consensus 262 i~~~g~l~~L~~----lL~~~~~~v~~~a~---~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~-- 332 (408)
. + -++-+.. .+.+=...||..+- .+|+.++. .+|......++++.+- .++|.|+.
T Consensus 1076 ~-e--~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~v-----------r~~d~~~~~~~~~~l~--~iLPfLl~~g 1139 (1702)
T KOG0915|consen 1076 K-E--KLPELWEAAFRVMDDIKESVREAADKAARALSKLCV-----------RICDVTNGAKGKEALD--IILPFLLDEG 1139 (1702)
T ss_pred H-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhcccCCcccHHHHHH--HHHHHHhccC
Confidence 1 1 1222333 22222345665544 44444443 1122112233333332 46777665
Q ss_pred hccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHH
Q 041050 333 NANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHRT 390 (408)
Q Consensus 333 lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~ 390 (408)
.+ +.-+++|+.+..++..|+......-.---...++.|.+....-++..+.-++.++
T Consensus 1140 im-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~ 1196 (1702)
T KOG0915|consen 1140 IM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL 1196 (1702)
T ss_pred cc-cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh
Confidence 33 6788999999999999998743311111334566777766654444433333333
No 206
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.33 E-value=2.2 Score=46.24 Aligned_cols=123 Identities=18% Similarity=0.294 Sum_probs=87.4
Q ss_pred hhHHHHHHhCCHHHHHHHHcCCC-------CHHHHHHHHHHHHHhccCChhhHHHHHhc--------CcHHHHHHHhh--
Q 041050 172 ANQEKIVEAGGLSSLLMLLRSFE-------DETIRRVAAGAIANLAMNAEANQELIMAQ--------GGISLLSTTAA-- 234 (408)
Q Consensus 172 ~~~~~i~~~g~i~~L~~lL~~~~-------~~~v~~~A~~aL~nLa~~~~~~~~~i~~~--------g~i~~Lv~lL~-- 234 (408)
...+-+.+.+++..++.+..... .-+....|+++|+-+..- |..|..+... .||..++....
T Consensus 592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~ 670 (1516)
T KOG1832|consen 592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGS 670 (1516)
T ss_pred hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeeccccc
Confidence 34566778888999998886432 235778899999999988 9998887643 25555554421
Q ss_pred cC-CCHHHHHHHHHHHHHHh-CCchh-----------------------------------HHHHHhcccHHHHHHhhcC
Q 041050 235 DA-EDPQTLRMVAGAIANLC-GNDKL-----------------------------------QMKLRSEGGIRALLGMVRC 277 (408)
Q Consensus 235 ~~-~~~~v~~~a~~aL~nL~-~~~~~-----------------------------------~~~i~~~g~l~~L~~lL~~ 277 (408)
.+ -||+++..|+.+|.|+. .-|.+ ...+..++||+.|++++..
T Consensus 671 ~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~ 750 (1516)
T KOG1832|consen 671 NSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQY 750 (1516)
T ss_pred ccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhc
Confidence 12 38999999999999986 33222 2345567899999999975
Q ss_pred CCH-----HHHHHHHHHHHHhhc
Q 041050 278 GHP-----DVLSQVARGIANFAK 295 (408)
Q Consensus 278 ~~~-----~v~~~a~~aL~nL~~ 295 (408)
..| .+++-||++|.-|++
T Consensus 751 k~P~t~aD~IRalAc~~L~GLaR 773 (1516)
T KOG1832|consen 751 KNPPTTADCIRALACRVLLGLAR 773 (1516)
T ss_pred cCCCCcHHHHHHHHHHHHhcccc
Confidence 433 367788888888874
No 207
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=85.30 E-value=17 Score=39.90 Aligned_cols=180 Identities=12% Similarity=0.089 Sum_probs=108.1
Q ss_pred hcCCCHHHHHHHHHHHHHHcCCchhHHHHHHh-CCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHH
Q 041050 149 LESEDANVRIHAVKVVANLAAEEANQEKIVEA-GGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGIS 227 (408)
Q Consensus 149 L~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~-g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~ 227 (408)
+.+.+-.-|..|+..+.....++. ....-.. |-+-.++.....+.+..+...|+..|..|+.-....- .=...+..|
T Consensus 262 ~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~-~~~~~~v~p 339 (815)
T KOG1820|consen 262 MLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF-RKYAKNVFP 339 (815)
T ss_pred hhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh-HHHHHhhcc
Confidence 346777778888888876655443 1111111 1244455555545577778878888888776522221 112234567
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhh
Q 041050 228 LLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFI 307 (408)
Q Consensus 228 ~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~ 307 (408)
.++.-+. ...+.++..+..++-.++..- .-....+.+..++++++|.++..+...+.-...
T Consensus 340 ~lld~lk-ekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~------------ 400 (815)
T KOG1820|consen 340 SLLDRLK-EKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLR------------ 400 (815)
T ss_pred hHHHHhh-hccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh------------
Confidence 7777763 344555555555554443211 112345668888999999999887766655543
Q ss_pred hhhccCCh-hhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050 308 RCTATGVK-SGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ 354 (408)
Q Consensus 308 i~~~~~~~-~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~ 354 (408)
..+ .....-.-.+++|.++....+.+.+||..|..++..+..
T Consensus 401 -----~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 401 -----KLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred -----hcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 111 222222234688899999999999999999988877654
No 208
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=85.16 E-value=6.4 Score=34.51 Aligned_cols=92 Identities=22% Similarity=0.188 Sum_probs=58.7
Q ss_pred eeeeeccCCCCCCCc------hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh--hhhcccccchhHhhHHHHHhHHHHH
Q 041050 2 HVLFYDTGFEPGASA------AEDIAEIRKLLQNEIHMRKTAEEELNKLKSRL--GQYTESGSCRDAEMSKLHKTLEDET 73 (408)
Q Consensus 2 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (408)
-||||.+.-.+..+. ..++..++..+..-....+.++.|+..+.+.+ +++....+.+..|+..+..+|+.+.
T Consensus 57 kiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 57 KIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred EEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378887766554433 44677777777777777888888888888875 3456666677777777777777655
Q ss_pred HHHh-hhHHHHHHHHhhhhhh
Q 041050 74 LQKR-KLEEEIVILRSQLLQL 93 (408)
Q Consensus 74 ~~~~-~~~~~~~~l~~~l~~~ 93 (408)
.... --.+++..+......+
T Consensus 137 ~~~~~vs~ee~~~~~~~~~~~ 157 (169)
T PF07106_consen 137 SGSKPVSPEEKEKLEKEYKKW 157 (169)
T ss_pred hCCCCCCHHHHHHHHHHHHHH
Confidence 3221 1234445444444333
No 209
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=85.08 E-value=43 Score=36.66 Aligned_cols=150 Identities=17% Similarity=0.105 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh---CCchhHHHHHhcccHHHHH
Q 041050 196 ETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC---GNDKLQMKLRSEGGIRALL 272 (408)
Q Consensus 196 ~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~---~~~~~~~~i~~~g~l~~L~ 272 (408)
-.++....+.+..++.. .. . .++...--+.+..-+ .+..-.++..++..+.-++ +....+.. .++.++
T Consensus 493 wRvr~ail~~ip~la~q-~~-~-~~~~~~~~~l~~~~l-~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~-----~i~k~L 563 (759)
T KOG0211|consen 493 WRVRLAILEYIPQLALQ-LG-V-EFFDEKLAELLRTWL-PDHVYSIREAAARNLPALVETFGSEWARLE-----EIPKLL 563 (759)
T ss_pred HHHHHHHHHHHHHHHHh-hh-h-HHhhHHHHHHHHhhh-hhhHHHHHHHHHHHhHHHHHHhCcchhHHH-----hhHHHH
Confidence 44555555666666554 21 1 222211111222222 2233467777777776666 32222222 234455
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHH
Q 041050 273 GMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHL 352 (408)
Q Consensus 273 ~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~L 352 (408)
.+...++-.++...+.++..|+. ..|. .+.....+|.+..+.....++||-+++..|..+
T Consensus 564 ~~~~q~~y~~R~t~l~si~~la~---------------v~g~-----ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i 623 (759)
T KOG0211|consen 564 AMDLQDNYLVRMTTLFSIHELAE---------------VLGQ-----EITCEDLLPVFLDLVKDPVANVRINVAKHLPKI 623 (759)
T ss_pred HHhcCcccchhhHHHHHHHHHHH---------------Hhcc-----HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHH
Confidence 55555556677777777776663 0122 234456788888899989999999999998887
Q ss_pred ccCchhHHHHHhCCcHHHHHHHHh
Q 041050 353 AQHEVNAREMISGGALWELVRISR 376 (408)
Q Consensus 353 a~~~~~~~~l~~~g~i~~L~~ll~ 376 (408)
...-.. ...+.-..+.+..+..
T Consensus 624 ~~~L~~--~~~~~~v~pll~~L~~ 645 (759)
T KOG0211|consen 624 LKLLDE--SVRDEEVLPLLETLSS 645 (759)
T ss_pred Hhhcch--HHHHHHHHHHHHHhcc
Confidence 654211 2223334445555444
No 210
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.87 E-value=46 Score=36.21 Aligned_cols=134 Identities=11% Similarity=0.122 Sum_probs=56.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHH-HcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050 143 HKILSLLESEDANVRIHAVKVVAN-LAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM 221 (408)
Q Consensus 143 ~~Ll~lL~s~~~~v~~~A~~aL~n-La~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~ 221 (408)
..|..+|++.....+..|..-+.+ ++.+.... .-.|..++-.. +.+.++++..---|...|...+ +-..+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS------~~Fp~VVKNVa-skn~EVKkLVyvYLlrYAEeqp-dLALL- 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVS------LLFPAVVKNVA-SKNIEVKKLVYVYLLRYAEEQP-DLALL- 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHhh-ccCHHHHHHHHHHHHHHhhcCC-Cceee-
Confidence 445566666555555555443333 33333211 12344444444 2455555544333333333311 11000
Q ss_pred hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
.|..+=+-| .++++-++..|++++..+-. -++.-=.+-++-+......+-|++.|+.||--|-.
T Consensus 109 ---SIntfQk~L-~DpN~LiRasALRvlSsIRv------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs 172 (968)
T KOG1060|consen 109 ---SINTFQKAL-KDPNQLIRASALRVLSSIRV------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS 172 (968)
T ss_pred ---eHHHHHhhh-cCCcHHHHHHHHHHHHhcch------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc
Confidence 122222333 34555566666665554421 11110011122233345556666666666666654
No 211
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=84.63 E-value=18 Score=41.93 Aligned_cols=133 Identities=10% Similarity=0.109 Sum_probs=70.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHh
Q 041050 228 LLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRF 306 (408)
Q Consensus 228 ~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~ 306 (408)
.++..| ..+.+.+|..|..+|.++. .++... .....-..+-+.+......|+..|...++-+..
T Consensus 820 ~Il~~l-~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl----------- 884 (1692)
T KOG1020|consen 820 LILSVL-GENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSASVREAALDLVGRFVL----------- 884 (1692)
T ss_pred HHHHHh-cCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhh-----------
Confidence 334444 3445566666666666665 333221 111122223334445556666666666665554
Q ss_pred hhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhc-CCHHH-HH
Q 041050 307 IRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRD-CSRED-IR 384 (408)
Q Consensus 307 ~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~-~~~~~-~~ 384 (408)
.+++....+. ..+..-.......||+.+..+++.+|...+....+ +....++++. .++|. ++
T Consensus 885 ------~~~e~~~qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i-----~~~cakmlrRv~DEEg~I~ 948 (1692)
T KOG1020|consen 885 ------SIPELIFQYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI-----VDMCAKMLRRVNDEEGNIK 948 (1692)
T ss_pred ------ccHHHHHHHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH-----HHHHHHHHHHhccchhHHH
Confidence 2333322222 24555566667789999999999999876554333 2334444432 23333 66
Q ss_pred HHHHHHH
Q 041050 385 SLAHRTL 391 (408)
Q Consensus 385 ~~A~~~L 391 (408)
.++..++
T Consensus 949 kLv~etf 955 (1692)
T KOG1020|consen 949 KLVRETF 955 (1692)
T ss_pred HHHHHHH
Confidence 6666554
No 212
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=83.94 E-value=55 Score=37.32 Aligned_cols=208 Identities=14% Similarity=0.127 Sum_probs=120.5
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccC---Chh
Q 041050 142 LHKILSLLES-EDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMN---AEA 215 (408)
Q Consensus 142 v~~Ll~lL~s-~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~---~~~ 215 (408)
++-+.+.+.+ ...+.+..|+..|..|+. +++.+- .-.+|-++.++. +++..||..|+.+|..+-.. -+.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~-Ds~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLM-DSEADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhc-CchHHHHHHHHHHHHHHHhhccCCCc
Confidence 4444455543 456778899999999887 444432 225899999998 46788999999888765332 133
Q ss_pred hHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCc----hhHHHHHhc-------------------------c
Q 041050 216 NQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGND----KLQMKLRSE-------------------------G 266 (408)
Q Consensus 216 ~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~----~~~~~i~~~-------------------------g 266 (408)
.-..|+-.=.+|.|-.++.++...-++..-+..|+-||... +..+.+... +
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~ 578 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHT 578 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHH
Confidence 33344444467888888755444456666666666665221 111111111 1
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcc----chhhhhHHHhhhhhccCChhhH--HHHH---------------hcC
Q 041050 267 GIRALLGMVRCGHPDVLSQVARGIANFAKC----ESRAATQVRFIRCTATGVKSGR--SLLI---------------EDG 325 (408)
Q Consensus 267 ~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~----~~~~~~~~~~~i~~~~~~~~~~--~~i~---------------~~g 325 (408)
+=...+.++..+++-|++.-+..|.-||.- .++. -+.--+++|..+.+++ -++. +.+
T Consensus 579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND--~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~sey 656 (1431)
T KOG1240|consen 579 VEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSND--VILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEY 656 (1431)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccccc--chHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHH
Confidence 112233455555566666555666666640 1111 0001144554444432 2222 446
Q ss_pred cHHHHHHhccCCCHHHHHHHHHHHHHHccCc
Q 041050 326 ALPWIVQNANNEAAPIRRHIELALCHLAQHE 356 (408)
Q Consensus 326 ~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 356 (408)
.+|.|.+-+...+.-|...|..+|..|+...
T Consensus 657 llPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ 687 (1431)
T KOG1240|consen 657 LLPLLQQGLTDGEEAVIVSALGSLSILIKLG 687 (1431)
T ss_pred HHHHHHHhccCcchhhHHHHHHHHHHHHHhc
Confidence 6777888888888889999999988888653
No 213
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=83.60 E-value=17 Score=39.88 Aligned_cols=268 Identities=15% Similarity=0.145 Sum_probs=140.0
Q ss_pred chhhhhhcCCCCchHHHHHHhcCHHHHHHhhc----CCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCC
Q 041050 119 HSQFRDSGNGQKAPITKLFEQVGLHKILSLLE----SEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFE 194 (408)
Q Consensus 119 ~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~----s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~ 194 (408)
++|.++.+....+-. -++.+.|+..++-++. .++..+.-.+...|+.|+........+++.|||.+|+.+=..
T Consensus 329 ~~q~l~~lgey~e~l-pv~~~~g~~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~-- 405 (1516)
T KOG1832|consen 329 CIQCLEILGEYVEVL-PVLHEKGVDVCIVLLERTSQLDDSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRV-- 405 (1516)
T ss_pred HHHHHHHHHhHHHHH-HHHHHhCchhhhhhhhhhhccccccccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCc--
Confidence 355555554444444 4556666777766553 345566677888899998888899999999999988876552
Q ss_pred CHHHHHHHHHHHHHhccCChhhHHHH------HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccH
Q 041050 195 DETIRRVAAGAIANLAMNAEANQELI------MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGI 268 (408)
Q Consensus 195 ~~~v~~~A~~aL~nLa~~~~~~~~~i------~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l 268 (408)
...-.....+|+.|+.. ...-+.+ +-..++..-+.+| ++.....+.+++-..+---.-...-..+-...++
T Consensus 406 -s~~~~g~s~cly~~~~~-q~~mervc~~p~~v~~~vv~~~~~l~-~cs~~~~~~~~~~ff~~~f~frail~~fd~~d~l 482 (1516)
T KOG1832|consen 406 -SETFYGLSSCLYTIGSL-QGIMERVCALPLVVIHQVVKLAIELL-DCSQDQARKNSALFFAAAFVFRAILDAFDAQDSL 482 (1516)
T ss_pred -hhhhhhHHHHHHHHhhh-hhHHHHHhhccHHHHHHHHHHHHHHH-hcchhhccchHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 22333345667777766 4443332 2223444445565 4444444444332222111111222233334555
Q ss_pred HHHHHhhcC--------CC---HHH--------HHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHH
Q 041050 269 RALLGMVRC--------GH---PDV--------LSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPW 329 (408)
Q Consensus 269 ~~L~~lL~~--------~~---~~v--------~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~ 329 (408)
+.|+.+++. .+ +++ -+..|.+++.--. +-. +.--+.++..-+..|.++.
T Consensus 483 ~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~Yf~----AHl--------~Ikve~~~k~~~~r~~~g~ 550 (1516)
T KOG1832|consen 483 QKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALRQYFR----AHL--------LIKVESIRKSRISRGGVGS 550 (1516)
T ss_pred HHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHHHHHH----HHH--------HHHHHhhhhhhcccCCCCc
Confidence 556655532 11 111 2234444443211 000 0011233333444566666
Q ss_pred HHHhccCC------CHHHHHHHHHHHHHHccC-c-------hhHHHHHhCCcHHHHHHHHhcCC-------HHHHHHHHH
Q 041050 330 IVQNANNE------AAPIRRHIELALCHLAQH-E-------VNAREMISGGALWELVRISRDCS-------REDIRSLAH 388 (408)
Q Consensus 330 Lv~lL~~~------~~~v~~~a~~aL~~La~~-~-------~~~~~l~~~g~i~~L~~ll~~~~-------~~~~~~~A~ 388 (408)
.++.+... .......++|.+-.+... + +.+.-+.+.|++..++++...+. +.+....|.
T Consensus 551 ~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al 630 (1516)
T KOG1832|consen 551 SMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYAL 630 (1516)
T ss_pred cccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHH
Confidence 66655432 222333444444333322 1 23445668888888888776443 234445565
Q ss_pred ---HHHhccHhhHHHHHhh
Q 041050 389 ---RTLSSSLTFRAEMRRL 404 (408)
Q Consensus 389 ---~~L~~~~~~~~~~~~~ 404 (408)
.++.+.|..+.++...
T Consensus 631 ~vL~i~t~iP~iq~~La~~ 649 (1516)
T KOG1832|consen 631 GVLHIVTSIPDIQKALAHA 649 (1516)
T ss_pred hheeeeEecchHHHHHHHH
Confidence 6678888888887543
No 214
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=82.99 E-value=4.4 Score=31.82 Aligned_cols=66 Identities=11% Similarity=0.054 Sum_probs=50.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 228 LLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 228 ~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
..+..+ .++.+.++..++..|.+|..... ...+.-.+.+..+...++++|+-|--+|..+++.|+.
T Consensus 7 ~al~~L-~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 7 EALSDL-NDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHc-cCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 344555 56778899999999999984444 2222335677788889999999999999999999986
No 215
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=82.98 E-value=51 Score=36.33 Aligned_cols=202 Identities=10% Similarity=0.070 Sum_probs=108.0
Q ss_pred CCCHHHHHHHHHHHHHHcCC-chhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHH
Q 041050 151 SEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLL 229 (408)
Q Consensus 151 s~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~L 229 (408)
+..+.+-..+.+++...+.. ..+. .+... .+...+..+.-+.++.++..|+.+++..+.- ...+.. .-+.+..|
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~-~~~~~-fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~-~vl~~~--~p~ild~L 535 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINP-QLLQH-FLNATVNALTMDVPPPVKISAVRAFCGYCKV-KVLLSL--QPMILDGL 535 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccch-hHHHH-HHHHHHHhhccCCCCchhHHHHHHHHhccCc-eecccc--chHHHHHH
Confidence 45566666677777655442 2222 11111 2444555555455666777677777666633 211111 12234556
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhh--cCCCHHHHHHHHHHHHHhhccchhhhhHHHh
Q 041050 230 STTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMV--RCGHPDVLSQVARGIANFAKCESRAATQVRF 306 (408)
Q Consensus 230 v~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL--~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~ 306 (408)
+.+. ...+.++......+|+-.| .|++. ..-++....|....+. .++||.+...+--++-.++. .
T Consensus 536 ~qla-s~~s~evl~llmE~Ls~vv~~dpef-~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q---~------- 603 (1005)
T KOG2274|consen 536 LQLA-SKSSDEVLVLLMEALSSVVKLDPEF-AASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ---I------- 603 (1005)
T ss_pred HHHc-ccccHHHHHHHHHHHHHHhccChhh-hhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH---H-------
Confidence 6665 3345578888889999998 45444 4445556777777765 47888777777666666653 0
Q ss_pred hhhhccCChhhHHHHHhcCcHHHHHHhccCCC----HHHHHHHHHHHHHHccC-chhHHHHHhCCcHHHHHHHHhcC
Q 041050 307 IRCTATGVKSGRSLLIEDGALPWIVQNANNEA----APIRRHIELALCHLAQH-EVNAREMISGGALWELVRISRDC 378 (408)
Q Consensus 307 ~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~----~~v~~~a~~aL~~La~~-~~~~~~l~~~g~i~~L~~ll~~~ 378 (408)
.++..-+ ....+|.++..+.... +....-+.-.|..+..+ ++-.....-.-+.|++.++.-++
T Consensus 604 --------~~~~g~m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHs 671 (1005)
T KOG2274|consen 604 --------AANYGPM-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHS 671 (1005)
T ss_pred --------HHhhcch-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeec
Confidence 0110011 1246777777776543 44555555566655554 22222222233455555554433
No 216
>PRK09169 hypothetical protein; Validated
Probab=82.87 E-value=52 Score=40.01 Aligned_cols=149 Identities=22% Similarity=0.241 Sum_probs=86.5
Q ss_pred CHHHHHHhhc-CCCHHHHHHHHHHHH-HHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH
Q 041050 141 GLHKILSLLE-SEDANVRIHAVKVVA-NLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE 218 (408)
Q Consensus 141 ~v~~Ll~lL~-s~~~~v~~~A~~aL~-nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~ 218 (408)
.|..+++.|+ =++......++..|+ -|+.++.....+ +.-.+..+++-|+.-++....+.++..|+.-..+.+..+.
T Consensus 164 ~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~al-~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~ 242 (2316)
T PRK09169 164 SFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQAM-DAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQ 242 (2316)
T ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHhc-chHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHH
Confidence 4666676666 344444455555554 555666666554 4446777777777556666666677777655444255554
Q ss_pred HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHH-HhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHH
Q 041050 219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIAN-LCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIA 291 (408)
Q Consensus 219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~n-L~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~ 291 (408)
.+-.. .+..+++-|++=++.+..+.++..|+- |+..+..+..+--.+.-..|-.+-+-++....+.++..|+
T Consensus 243 ~l~~q-~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA 315 (2316)
T PRK09169 243 SLRAQ-EVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALA 315 (2316)
T ss_pred hcCHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 44333 355666777766666666666666664 4466666666555555555555555555554444444433
No 217
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=82.51 E-value=26 Score=37.55 Aligned_cols=130 Identities=14% Similarity=0.112 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHH
Q 041050 152 EDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLS 230 (408)
Q Consensus 152 ~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv 230 (408)
.++.++..|.-.|..+-. ... ++ ...+|.|+..+..+++|.+|..|+-.++.++.......+.. ...|.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~----fc-~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~-----t~yLy 977 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFE----FC-SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEH-----THYLY 977 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHH----HH-HHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHH-----HHHHH
Confidence 788899888888876532 222 22 22589999999978899999999988887655422222222 23455
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 041050 231 TTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKC 296 (408)
Q Consensus 231 ~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~ 296 (408)
+-| .+++..|++.+..++.+|-.- ..+-=.|-++.+...|..+|..+...|-..+..++..
T Consensus 978 rrL-~De~~~V~rtclmti~fLila----gq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~K 1038 (1128)
T COG5098 978 RRL-GDEDADVRRTCLMTIHFLILA----GQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred HHh-cchhhHHHHHHHHHHHHHHHc----cceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhc
Confidence 555 457788999999999998521 1122246677788899999999999998888888863
No 218
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=82.12 E-value=19 Score=31.26 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=26.8
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccCChh
Q 041050 183 LSSLLMLLRSFEDETIRRVAAGAIANLAMNAEA 215 (408)
Q Consensus 183 i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~ 215 (408)
++.|+.+|+++.+..+|+.++.+|+.|..-+|.
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~ 44 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPY 44 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcH
Confidence 567788888777799999999999999887343
No 219
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=81.80 E-value=21 Score=31.18 Aligned_cols=69 Identities=22% Similarity=0.250 Sum_probs=52.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCC--HHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGG--LSSLLMLLRSFEDETIRRVAAGAIANLAM 211 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~--i~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 211 (408)
+..+.++|++.++.-|..++..+.-.+... ..+.+.+.++ +..|+.+|+..+++.+...++.+|..|..
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~-~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQC-SWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 566779999999999998888887766521 1455556655 78999999987888888888888876644
No 220
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.77 E-value=21 Score=36.50 Aligned_cols=140 Identities=16% Similarity=0.073 Sum_probs=81.4
Q ss_pred cCCCHHHHHHHHHHHHHHcCC-chhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHh-cCcHH
Q 041050 150 ESEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMA-QGGIS 227 (408)
Q Consensus 150 ~s~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~-~g~i~ 227 (408)
.+++..+|.-|++.|+|.+.. |+-....... .+..++.-|.+..+.+|.-.++.+|.-+..- -.+.+.-.. ....-
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~-~~~~~l~~~~l~ial 345 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK-ASNDDLESYLLNIAL 345 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHh-hhhcchhhhchhHHH
Confidence 367889999999999999985 4333333222 3555655555456677877777777665443 222221111 11122
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHh--CCchhHHHHHh--cccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 041050 228 LLSTTAADAEDPQTLRMVAGAIANLC--GNDKLQMKLRS--EGGIRALLGMVRCGHPDVLSQVARGIANF 293 (408)
Q Consensus 228 ~Lv~lL~~~~~~~v~~~a~~aL~nL~--~~~~~~~~i~~--~g~l~~L~~lL~~~~~~v~~~a~~aL~nL 293 (408)
.+..+. ++++++++..+......|+ ....++..+.+ .+.+..++-.+..++|.+-+ ||+.....
T Consensus 346 rlR~l~-~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~ 413 (533)
T KOG2032|consen 346 RLRTLF-DSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRT 413 (533)
T ss_pred HHHHHH-HhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHh
Confidence 444554 6788889888877777776 33344444432 23344466666777787765 44444333
No 221
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.76 E-value=38 Score=36.65 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=46.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHH
Q 041050 268 IRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIEL 347 (408)
Q Consensus 268 l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~ 347 (408)
+..+.+.+.-.+..++..|..+++++.. +++.. ...+.-.|..++.+.+.++|..|..
T Consensus 468 ir~iyNRviLEn~ivRaaAv~alaKfg~-----------------~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf 525 (865)
T KOG1078|consen 468 IRFIYNRVILENAIVRAAAVSALAKFGA-----------------QDVVL-----LPSILVLLKRCLNDSDDEVRDRATF 525 (865)
T ss_pred hHHHhhhhhhhhhhhHHHHHHHHHHHhc-----------------CCCCc-----cccHHHHHHHHhcCchHHHHHHHHH
Confidence 3445555556778888888899999874 23222 2234456777888889999999999
Q ss_pred HHHHHc
Q 041050 348 ALCHLA 353 (408)
Q Consensus 348 aL~~La 353 (408)
.+.++-
T Consensus 526 ~l~~l~ 531 (865)
T KOG1078|consen 526 YLKNLE 531 (865)
T ss_pred HHHHhh
Confidence 999887
No 222
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=81.15 E-value=19 Score=38.41 Aligned_cols=133 Identities=17% Similarity=0.123 Sum_probs=89.0
Q ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHH
Q 041050 182 GLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMK 261 (408)
Q Consensus 182 ~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~ 261 (408)
.+|.|..-++ +.+..++..++..+-..+.. -+ -.++..-.+|.|..+........++..++-+++-+. +..+.
T Consensus 390 IlplL~~S~~-~~~~~iQ~~~L~~lptv~e~-iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~lD~ 462 (700)
T KOG2137|consen 390 ILPLLYRSLE-DSDVQIQELALQILPTVAES-ID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRLDK 462 (700)
T ss_pred HHHHHHHHhc-CcchhhHHHHHHhhhHHHHh-cc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHHHH
Confidence 4566666666 46778888888888777654 22 445555568888888777788889999999998887 12121
Q ss_pred HHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCH
Q 041050 262 LRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAA 339 (408)
Q Consensus 262 i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~ 339 (408)
..-..-+.++..-.+..||.+...+.++..++.. .+..+ ..+.-..++|.++.+...+.-
T Consensus 463 ~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~-----------------~~~~g-~ev~~~~VlPlli~ls~~~~L 522 (700)
T KOG2137|consen 463 AAVLDELLPILKCIKTRDPAIVMGFLRIYEALAL-----------------IIYSG-VEVMAENVLPLLIPLSVAPSL 522 (700)
T ss_pred HHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh-----------------hcccc-eeeehhhhhhhhhhhhhcccc
Confidence 1111223445555578899999988888888875 33333 334455789988888876643
No 223
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=81.15 E-value=25 Score=31.39 Aligned_cols=77 Identities=19% Similarity=0.219 Sum_probs=61.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHH---HHHhhhHHHHHHHHhhhhhhhHH
Q 041050 20 IAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDET---LQKRKLEEEIVILRSQLLQLTFE 96 (408)
Q Consensus 20 ~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~ 96 (408)
-+.|+.-++|=-.-.+++.+|..+++.+++.....++-+..|+.++++.++..- ..-+.+++++..|+.....+.-+
T Consensus 3 t~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~ 82 (193)
T PF14662_consen 3 TSDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEE 82 (193)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788877888999999999999998777777788888998888887543 44567899999999988777543
No 224
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=80.70 E-value=23 Score=37.34 Aligned_cols=131 Identities=18% Similarity=0.159 Sum_probs=79.2
Q ss_pred HHHHHHhhcC----CCHHHHHHHHHHHHHHcC----CchhH-HHHHHhCCHHHHHHHHcC---CCCHHHHHHHHHHHHHh
Q 041050 142 LHKILSLLES----EDANVRIHAVKVVANLAA----EEANQ-EKIVEAGGLSSLLMLLRS---FEDETIRRVAAGAIANL 209 (408)
Q Consensus 142 v~~Ll~lL~s----~~~~v~~~A~~aL~nLa~----~~~~~-~~i~~~g~i~~L~~lL~~---~~~~~v~~~A~~aL~nL 209 (408)
+..+..++++ .+..++..|+-+++++.. +.... ..++ ...++.|...|.. ..+...+..++.+|+|+
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVL-EELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhH-HHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 4555666664 356678888888887764 22111 1222 2256666666542 23555567789999999
Q ss_pred ccCChhhHHHHHhcCcHHHHHHHhh--cCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhc--CCCHHHHH
Q 041050 210 AMNAEANQELIMAQGGISLLSTTAA--DAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVR--CGHPDVLS 284 (408)
Q Consensus 210 a~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~--~~~~~v~~ 284 (408)
... ..++.|...+. ...++.++..|+++|.+++ .++..- -+.++.+.. ..++++|.
T Consensus 474 g~~-----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 474 GHP-----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred CCh-----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHHH
Confidence 886 24566666654 2234679999999999987 343322 223555553 56778877
Q ss_pred HHHHHHHH
Q 041050 285 QVARGIAN 292 (408)
Q Consensus 285 ~a~~aL~n 292 (408)
.|...|..
T Consensus 535 aA~~~lm~ 542 (574)
T smart00638 535 AAVLVLME 542 (574)
T ss_pred HHHHHHHh
Confidence 66655544
No 225
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=79.98 E-value=12 Score=41.28 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=64.7
Q ss_pred chhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhhHHHHHHHhhhhcccccccccccccchhhhhhcCCCCchHHHH
Q 041050 57 CRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLDKHSQFRDSGNGQKAPITKL 136 (408)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~ls~~~~~~~~l 136 (408)
....++.+++.++..+...|+.++++=..+.+.+....-.-.+..+.+-..+...+..|.+.+..+.+.+.
T Consensus 450 ~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k--------- 520 (1200)
T KOG0964|consen 450 EFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVANGIDSVRKIKEELK--------- 520 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhc---------
Confidence 44567778899999999999999999999988887665444444444444333333445554444444332
Q ss_pred HHhcCHHHHHHhhcCCCH---HHHHHHHHHHHHHcC-CchhHHHH
Q 041050 137 FEQVGLHKILSLLESEDA---NVRIHAVKVVANLAA-EEANQEKI 177 (408)
Q Consensus 137 ~~~~~v~~Ll~lL~s~~~---~v~~~A~~aL~nLa~-~~~~~~~i 177 (408)
-.|....++.+++.++. .+-..|-..|.++.. +++...+|
T Consensus 521 -~ngv~G~v~eL~~v~~~f~tavEvtaGNsLF~iVVdndevATkI 564 (1200)
T KOG0964|consen 521 -PNGVFGTVYELIKVPNKFKTAVEVTAGNSLFNIVVDNDEVATKI 564 (1200)
T ss_pred -ccccceehhhhhcCCHHHHhHHhhhcccceEEEEecccHHHHHH
Confidence 23445667777766553 222223334444443 44444444
No 226
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.86 E-value=85 Score=34.99 Aligned_cols=111 Identities=11% Similarity=-0.026 Sum_probs=64.6
Q ss_pred CHHHHHHHHc------CC-CCHHHHHHHHHHHHHhccC--ChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 041050 182 GLSSLLMLLR------SF-EDETIRRVAAGAIANLAMN--AEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANL 252 (408)
Q Consensus 182 ~i~~L~~lL~------~~-~~~~v~~~A~~aL~nLa~~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL 252 (408)
.++-+++.+. .. .++.....|+.++++|+.- .+..-+..++.=.++.++..+ .++..-++..|||++..+
T Consensus 411 ~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f-~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 411 ILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEF-QSPYGYLRARACWVLSQF 489 (1010)
T ss_pred HHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhh-cCchhHHHHHHHHHHHHH
Confidence 3555666664 11 2455556688888877631 011112222222233333343 556667899999999999
Q ss_pred h-CCchhHHHHHhcccHHHHHHhhc-CCCHHHHHHHHHHHHHhhc
Q 041050 253 C-GNDKLQMKLRSEGGIRALLGMVR-CGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 253 ~-~~~~~~~~i~~~g~l~~L~~lL~-~~~~~v~~~a~~aL~nL~~ 295 (408)
| .+=.....+. .++....+.|. +++-.|+-.|+-||..|..
T Consensus 490 ~~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~ 532 (1010)
T KOG1991|consen 490 SSIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFIS 532 (1010)
T ss_pred HhccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHh
Confidence 8 2222222221 23444556565 7777899999999999986
No 227
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=79.85 E-value=14 Score=39.52 Aligned_cols=138 Identities=12% Similarity=0.088 Sum_probs=94.1
Q ss_pred HHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh
Q 041050 135 KLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE 214 (408)
Q Consensus 135 ~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~ 214 (408)
+-+....+|.|..-+++.+..+|..++..+...+..-+ ...+..-.+|.|..+...+.+..++..++-+++.+...
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~-- 459 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR-- 459 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH--
Confidence 34455567777788888999999999999998876222 34455556888888865567888888888888887722
Q ss_pred hhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCC
Q 041050 215 ANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGH 279 (408)
Q Consensus 215 ~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~ 279 (408)
--+-.+++ -+..+.... ...||.+.....++..++.........++-+.++|.++.+...+.
T Consensus 460 lD~~~v~d--~~lpi~~~~-~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 460 LDKAAVLD--ELLPILKCI-KTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHhHH--HHHHHHHHh-cCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 11111222 233333443 567899999999999999855555455666788888888775543
No 228
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=79.43 E-value=1.1e+02 Score=34.63 Aligned_cols=187 Identities=14% Similarity=0.130 Sum_probs=105.2
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHHcCCch-hHHHHHHhCCHHHHHHHHcC-------CCCHHHHHHHHHHHHHhccC
Q 041050 142 LHKILSLLE-SEDANVRIHAVKVVANLAAEEA-NQEKIVEAGGLSSLLMLLRS-------FEDETIRRVAAGAIANLAMN 212 (408)
Q Consensus 142 v~~Ll~lL~-s~~~~v~~~A~~aL~nLa~~~~-~~~~i~~~g~i~~L~~lL~~-------~~~~~v~~~A~~aL~nLa~~ 212 (408)
+...+++++ .+++..-..|+-+|+-||.-.- .-..+. ..+|.++.-|.- .....||..|+.++|.++..
T Consensus 381 i~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ra 458 (1133)
T KOG1943|consen 381 IGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARA 458 (1133)
T ss_pred HHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhc
Confidence 555566555 3445666678888888876211 111111 134555555421 12346899999999999875
Q ss_pred C-hhhHHHHHhcCcHH-HHHHHhhcCCCHHHHHHHHHHHHHHhCCchh--------------------------HHHHHh
Q 041050 213 A-EANQELIMAQGGIS-LLSTTAADAEDPQTLRMVAGAIANLCGNDKL--------------------------QMKLRS 264 (408)
Q Consensus 213 ~-~~~~~~i~~~g~i~-~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~--------------------------~~~i~~ 264 (408)
. +.--+.++.. -.+ .|...+ -+++-.+++.|..|+.-..|--.+ ...+.+
T Consensus 459 ys~~~l~p~l~~-L~s~LL~~Al-FDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~ 536 (1133)
T KOG1943|consen 459 YSPSDLKPVLQS-LASALLIVAL-FDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAE 536 (1133)
T ss_pred CChhhhhHHHHH-HHHHHHHHHh-cCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHh
Confidence 2 2222222222 223 233343 346667899998888866532111 111111
Q ss_pred -cccHHHHHHhh-----cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCC
Q 041050 265 -EGGIRALLGMV-----RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEA 338 (408)
Q Consensus 265 -~g~l~~L~~lL-----~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~ 338 (408)
.|....+++-+ .+=|+.++..++++|.+|+. -.++ ...++.+|+++...-+.+
T Consensus 537 ~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~-----------------~~pk----~~a~~~L~~lld~~ls~~ 595 (1133)
T KOG1943|consen 537 FSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL-----------------TEPK----YLADYVLPPLLDSTLSKD 595 (1133)
T ss_pred hhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH-----------------hhHH----hhcccchhhhhhhhcCCC
Confidence 23344455433 23478899999999999986 2222 245577888888777777
Q ss_pred HHHHHHHHHHHHHHc
Q 041050 339 APIRRHIELALCHLA 353 (408)
Q Consensus 339 ~~v~~~a~~aL~~La 353 (408)
...|.-+..+.+.+.
T Consensus 596 ~~~r~g~~la~~ev~ 610 (1133)
T KOG1943|consen 596 ASMRHGVFLAAGEVI 610 (1133)
T ss_pred hHHhhhhHHHHHHHH
Confidence 766665555554443
No 229
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=79.32 E-value=42 Score=35.73 Aligned_cols=196 Identities=16% Similarity=0.130 Sum_probs=98.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhHHHHHHhCCHHHHHHHHcC---CCCHHHHHHHHHHHHHhccCChh--
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEE-ANQEKIVEAGGLSSLLMLLRS---FEDETIRRVAAGAIANLAMNAEA-- 215 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~L~~lL~~---~~~~~v~~~A~~aL~nLa~~~~~-- 215 (408)
+..+.+++.+....- ..|..+|..+.... .....+ +..+..++.+ ..++.++..|+-+++.|....-.
T Consensus 397 v~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~Pt~e~-----l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~ 470 (618)
T PF01347_consen 397 VKFIKDLIKSKKLTD-DEAAQLLASLPFHVRRPTEEL-----LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNS 470 (618)
T ss_dssp HHHHHHHHHTT-S-H-HHHHHHHHHHHHT-----HHH-----HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCCCCHHH-----HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecc
Confidence 455556666533222 23555566554422 222223 3344444442 13556777777676666443111
Q ss_pred -------hHHHHHhcCcHHHHHHHhh---cCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCC---CHHH
Q 041050 216 -------NQELIMAQGGISLLSTTAA---DAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCG---HPDV 282 (408)
Q Consensus 216 -------~~~~i~~~g~i~~Lv~lL~---~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~---~~~v 282 (408)
..........++.|...+. ...+..-...++.+|+|+.. ...++.|...+... ...+
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~ 540 (618)
T PF01347_consen 471 DSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFI 540 (618)
T ss_dssp ----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHH
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHH
Confidence 1122223334566666554 44566777889999999852 24566677777544 6778
Q ss_pred HHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC--CCHHHHHHHHHHHHHHccCchhHH
Q 041050 283 LSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN--EAAPIRRHIELALCHLAQHEVNAR 360 (408)
Q Consensus 283 ~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~--~~~~v~~~a~~aL~~La~~~~~~~ 360 (408)
+..|+++|..++.. .++ .+.+.|.+...+ ++.++|..|..+|.. +++...
T Consensus 541 R~~Ai~Alr~~~~~-----------------~~~--------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~--~~P~~~- 592 (618)
T PF01347_consen 541 RVAAIQALRRLAKH-----------------CPE--------KVREILLPIFMNTTEDPEVRIAAYLILMR--CNPSPS- 592 (618)
T ss_dssp HHHHHHTTTTGGGT------------------HH--------HHHHHHHHHHH-TTS-HHHHHHHHHHHHH--T---HH-
T ss_pred HHHHHHHHHHHhhc-----------------CcH--------HHHHHHHHHhcCCCCChhHHHHHHHHHHh--cCCCHH-
Confidence 88999999988751 111 234466666643 477888887766554 332221
Q ss_pred HHHhCCcHHHHHHHHhcCCHHHHHHHH
Q 041050 361 EMISGGALWELVRISRDCSREDIRSLA 387 (408)
Q Consensus 361 ~l~~~g~i~~L~~ll~~~~~~~~~~~A 387 (408)
.+..+...+.......+....
T Consensus 593 ------~l~~i~~~l~~E~~~QV~sfv 613 (618)
T PF01347_consen 593 ------VLQRIAQSLWNEPSNQVASFV 613 (618)
T ss_dssp ------HHHHHHHHHTT-S-HHHHHHH
T ss_pred ------HHHHHHHHHhhCchHHHHHHH
Confidence 244555555544444444433
No 230
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=79.30 E-value=55 Score=35.85 Aligned_cols=172 Identities=16% Similarity=0.082 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCchhHHHHHhcccHHH
Q 041050 193 FEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC--GNDKLQMKLRSEGGIRA 270 (408)
Q Consensus 193 ~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~ 270 (408)
+..+.++..++.-+++++.. ........+.++.+..+.. ++...++..|...+.++. .++.. =......+.
T Consensus 248 d~~~~Vr~~~a~~l~~~a~~---~~~~~~~s~v~~~~~~L~~-DdqdsVr~~a~~~~~~l~~l~~~~~---d~~~~~~~~ 320 (759)
T KOG0211|consen 248 DDTPMVRRAVASNLGNIAKV---LESEIVKSEVLPTLIQLLR-DDQDSVREAAVESLVSLLDLLDDDD---DVVKSLTES 320 (759)
T ss_pred ccchhhHHHHHhhhHHHHHH---HHHHHHHhhccHHHhhhhh-cchhhHHHHHHHHHHHHHHhcCCch---hhhhhhhHH
Confidence 34556666666666666554 2236666677777778864 344578877877777776 22221 112235566
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHH
Q 041050 271 LLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALC 350 (408)
Q Consensus 271 L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~ 350 (408)
+++....++..++..++.....+... . |. .......++....+++....+.+..++.-..
T Consensus 321 l~~~~~d~~~~v~~~~~~~~~~L~~~----~-----------~~-----~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~ 380 (759)
T KOG0211|consen 321 LVQAVEDGSWRVSYMVADKFSELSSA----V-----------GP-----SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQ 380 (759)
T ss_pred HHHHhcChhHHHHHHHhhhhhhHHHH----h-----------cc-----ccCcccchhhHHHHhcchhhhhhHHhhcchH
Confidence 77777788888888777666666540 0 00 1122234566666777666666666666666
Q ss_pred HHccC--chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 041050 351 HLAQH--EVNAREMISGGALWELVRISRDCSREDIRSLAHRTL 391 (408)
Q Consensus 351 ~La~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L 391 (408)
.++.. .++...+...-.++.+..+..+.........|..+.
T Consensus 381 ~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~ 423 (759)
T KOG0211|consen 381 KLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVIT 423 (759)
T ss_pred HHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhcccc
Confidence 66654 233344455555666666666544444444444333
No 231
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=79.29 E-value=46 Score=29.63 Aligned_cols=140 Identities=22% Similarity=0.199 Sum_probs=87.8
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHcC----CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh
Q 041050 141 GLHKILSLLESEDANVRIHAVKVVANLAA----EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN 216 (408)
Q Consensus 141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~----~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~ 216 (408)
-++.++++.-+++..++..|+.++.-+.. +|. -.+|.|+.+.. ++++.++..|...+..+....+..
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~--------~cvp~lIAL~t-s~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK--------QCVPTLIALET-SPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH--------HHHhHhhhhhC-CCChHHHHHHHHHHHHHHHHhHHH
Confidence 36778888889999999999999976543 221 13788888887 578999999999999997664444
Q ss_pred HHHHHhcCcHHHHHHHh---hcCCCHHH---HHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCC--------CHH
Q 041050 217 QELIMAQGGISLLSTTA---ADAEDPQT---LRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCG--------HPD 281 (408)
Q Consensus 217 ~~~i~~~g~i~~Lv~lL---~~~~~~~v---~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~--------~~~ 281 (408)
-..=... |+..-..+- ..+..... .....+.+..+. .+...|..++. .|++.+..+ .+.
T Consensus 80 v~~~~~~-gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~-----~l~k~f~~~~~~~~~~~~~~ 153 (187)
T PF12830_consen 80 VESRYSE-GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLK-----SLLKQFDFDLTKLSSESSPS 153 (187)
T ss_pred HHHHHHH-HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHH-----HHHHHHHhhccccccccchh
Confidence 4433333 455433332 12111111 455666677776 56677776643 466655322 344
Q ss_pred HHHHHHHHHHHhhc
Q 041050 282 VLSQVARGIANFAK 295 (408)
Q Consensus 282 v~~~a~~aL~nL~~ 295 (408)
-........-||+.
T Consensus 154 ~l~~~~Fla~nLA~ 167 (187)
T PF12830_consen 154 DLDFLLFLAENLAT 167 (187)
T ss_pred HHHHHHHHHHHHhc
Confidence 45556666666663
No 232
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.78 E-value=33 Score=38.06 Aligned_cols=134 Identities=13% Similarity=0.124 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHHHh---CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCC
Q 041050 238 DPQTLRMVAGAIANLC---GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGV 314 (408)
Q Consensus 238 ~~~v~~~a~~aL~nL~---~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~ 314 (408)
++.-..-|.+++++|| .-+..-...++.=.++.+...++++-.-++..|||.++.++. -+
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~-----------------~d 493 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSS-----------------ID 493 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHh-----------------cc
Confidence 4455667777777776 222222223333344556666677878899999999999984 11
Q ss_pred hhhHHHHHhcCcHHHHHHhcc-CCCHHHHHHHHHHHHHHccCchhHHHHHh---CCcHHHHHHHHhcCCHHHHHHHHHHH
Q 041050 315 KSGRSLLIEDGALPWIVQNAN-NEAAPIRRHIELALCHLAQHEVNAREMIS---GGALWELVRISRDCSREDIRSLAHRT 390 (408)
Q Consensus 315 ~~~~~~i~~~g~l~~Lv~lL~-~~~~~v~~~a~~aL~~La~~~~~~~~l~~---~g~i~~L~~ll~~~~~~~~~~~A~~~ 390 (408)
-.....+ ..++......+. +.+-.|+..|+.||..+-.+.+....-++ -+.+..|..|.+....+++...-.++
T Consensus 494 f~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~i 571 (1010)
T KOG1991|consen 494 FKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKI 571 (1010)
T ss_pred CCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 1111111 124555566666 67888999999999998888655433222 34555667777766666655443333
No 233
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.63 E-value=27 Score=40.56 Aligned_cols=153 Identities=17% Similarity=0.104 Sum_probs=84.3
Q ss_pred hcCHHHHH--HhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHH-HHHHHHHhccCC-h
Q 041050 139 QVGLHKIL--SLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRV-AAGAIANLAMNA-E 214 (408)
Q Consensus 139 ~~~v~~Ll--~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~-A~~aL~nLa~~~-~ 214 (408)
...+|.|+ ..+ |.-+++|..+..++..|+......-+-.-...||.|+..++. -.+++... ++.+ .|...+. +
T Consensus 1129 ~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~-lE~~vLnYls~r~-~~~e~ealD 1205 (1702)
T KOG0915|consen 1129 DIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSE-LEPQVLNYLSLRL-INIETEALD 1205 (1702)
T ss_pred HHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccc-cchHHHHHHHHhh-hhhHHHHHH
Confidence 33466666 233 778999999999999998733222222222347777777763 33344433 3222 2221110 1
Q ss_pred hhHHHH--------------------HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CC-chhHHHHHhcccHHHHH
Q 041050 215 ANQELI--------------------MAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GN-DKLQMKLRSEGGIRALL 272 (408)
Q Consensus 215 ~~~~~i--------------------~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~-~~~~~~i~~~g~l~~L~ 272 (408)
..|..+ +=..-+|.+.++++.+-...++..++..+.-|+ .. .+..- .....+++++
T Consensus 1206 t~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP--~sgKll~al~ 1283 (1702)
T KOG0915|consen 1206 TLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTP--YSGKLLRALF 1283 (1702)
T ss_pred HHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCc--chhHHHHHHh
Confidence 111111 111245566666655555555666666666665 10 00000 0122456677
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcc
Q 041050 273 GMVRCGHPDVLSQVARGIANFAKC 296 (408)
Q Consensus 273 ~lL~~~~~~v~~~a~~aL~nL~~~ 296 (408)
..++..++.+++..+.|++.|+.-
T Consensus 1284 ~g~~dRNesv~kafAsAmG~L~k~ 1307 (1702)
T KOG0915|consen 1284 PGAKDRNESVRKAFASAMGYLAKF 1307 (1702)
T ss_pred hccccccHHHHHHHHHHHHHHHhc
Confidence 778888999999999999999873
No 234
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.44 E-value=2.8 Score=40.91 Aligned_cols=52 Identities=19% Similarity=0.098 Sum_probs=46.7
Q ss_pred HHHHHHHHHh-CCchhHHHHHhcccHHHHHHhh--cCCCHHHHHHHHHHHHHhhc
Q 041050 244 MVAGAIANLC-GNDKLQMKLRSEGGIRALLGMV--RCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 244 ~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL--~~~~~~v~~~a~~aL~nL~~ 295 (408)
++.+.|++|| .++++++.+.+.||++.++.-. ...+|-++.....|+.+|..
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~ 429 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQ 429 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHh
Confidence 4678999999 9999999999999999998866 46789999999999999986
No 235
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=78.15 E-value=26 Score=31.19 Aligned_cols=111 Identities=20% Similarity=0.154 Sum_probs=71.7
Q ss_pred cHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHh-cc----c---------------HHHHHHhh-cCCCHHHH
Q 041050 225 GISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRS-EG----G---------------IRALLGMV-RCGHPDVL 283 (408)
Q Consensus 225 ~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~-~g----~---------------l~~L~~lL-~~~~~~v~ 283 (408)
.-+.|+..+..++++.++..|+.++..|-......-...+ .. . -..|+..+ ...++.+.
T Consensus 40 ~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l 119 (182)
T PF13251_consen 40 ATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVL 119 (182)
T ss_pred CCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 3446777766788999999999999998733222111111 11 1 12244444 34577888
Q ss_pred HHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHH----HHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 284 SQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALP----WIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 284 ~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~----~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
.++..+++.|.. ..|-.|- ..|.++ .+..++.+.|++++..+..++..+..-
T Consensus 120 ~q~lK~la~Lv~-----------------~tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 120 TQLLKCLAVLVQ-----------------ATPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHc-----------------cCChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 899999999986 3333322 234544 445566778999999999988887654
No 236
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=78.09 E-value=12 Score=41.35 Aligned_cols=91 Identities=11% Similarity=0.105 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh
Q 041050 196 ETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV 275 (408)
Q Consensus 196 ~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL 275 (408)
+.++.++.-.|+++|..++...+. -+|.|+.-|..+++..++-+++-+++.+|.. -.++-...+|.|...|
T Consensus 945 ~~vra~~vvTlakmcLah~~LaKr-----~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~----YTam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAKR-----LMPMLVKELEYNTAHAIRNNIVLAMGDICSS----YTAMTDRYIPMIAASL 1015 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhhhHHHHhcceeeeehhhHHH----HHHHHHHhhHHHHHHh
Confidence 357777888899998874554443 3788888887777777887777777777732 2234456789899999
Q ss_pred cCCCHHHHHHHHHHHHHhhc
Q 041050 276 RCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 276 ~~~~~~v~~~a~~aL~nL~~ 295 (408)
..+++-|++++.-.|++|-.
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq 1035 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQ 1035 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHh
Confidence 99999999999999999874
No 237
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=77.53 E-value=47 Score=29.57 Aligned_cols=137 Identities=17% Similarity=0.174 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHcCC-c-----hhHHHHHH------hCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhc
Q 041050 156 VRIHAVKVVANLAAE-E-----ANQEKIVE------AGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQ 223 (408)
Q Consensus 156 v~~~A~~aL~nLa~~-~-----~~~~~i~~------~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~ 223 (408)
+|..|+..|..++.. + ..+..++= ...-+.|+..+-.++++.+|..|+.++..|-..+..+-..--+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 456666666666543 1 11222222 22355666666556789999999999998877632221111111
Q ss_pred C----cH---------------HHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccH----HHHHHhhcCCC
Q 041050 224 G----GI---------------SLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGI----RALLGMVRCGH 279 (408)
Q Consensus 224 g----~i---------------~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l----~~L~~lL~~~~ 279 (408)
. .. ..|+..|....++.+....+.+++.|. ..|..|-. .|.+ ..+..++.+.|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~---~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLP---PGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcC---HhHHHHHHHHHHHHHhcCC
Confidence 1 11 134555556667888999999999998 55544432 2444 44455667899
Q ss_pred HHHHHHHHHHHHHhhc
Q 041050 280 PDVLSQVARGIANFAK 295 (408)
Q Consensus 280 ~~v~~~a~~aL~nL~~ 295 (408)
++++..+..++..+..
T Consensus 159 ~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 159 PNVRVAALSCLGALLS 174 (182)
T ss_pred CcHHHHHHHHHHHHHc
Confidence 9999998888888874
No 238
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=76.73 E-value=20 Score=37.49 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=31.5
Q ss_pred HHHHHh-hcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccC
Q 041050 143 HKILSL-LESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMN 212 (408)
Q Consensus 143 ~~Ll~l-L~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~ 212 (408)
..+++. ++..+.++|+.|+-+|+-++..+ ...++..+++|..+.++-||...+.+|+--|..
T Consensus 554 ~~lLh~avsD~nDDVrRAAViAlGfvc~~D--------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag 616 (926)
T COG5116 554 STLLHYAVSDGNDDVRRAAVIALGFVCCDD--------RDLLVGTVELLSESHNFHVRAGVAVALGIACAG 616 (926)
T ss_pred hhhheeecccCchHHHHHHHHheeeeEecC--------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcC
Confidence 334433 34455666666666665555433 123445555555445555555555555544444
No 239
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=76.17 E-value=97 Score=31.74 Aligned_cols=140 Identities=14% Similarity=0.160 Sum_probs=85.4
Q ss_pred HHHHhhcC-CCHHHHHHHHHHHHHHcCCchhHHHHHH--hCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050 144 KILSLLES-EDANVRIHAVKVVANLAAEEANQEKIVE--AGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 144 ~Ll~lL~s-~~~~v~~~A~~aL~nLa~~~~~~~~i~~--~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
.+++.|+. .++..+..|+++|..+..+...+ +++ +-+|.+++..-.++.+..++.++-.++.-++.+ ...+..
T Consensus 333 ~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~--l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~-~P~~~I- 408 (516)
T KOG2956|consen 333 LLLEVLSDSEDEIIKKLALRVLREMLTNQPAR--LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASH-LPLQCI- 408 (516)
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHhchHh--hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhh-CchhHH-
Confidence 34466664 78889999999999887743322 222 225677777777555555555555566677776 333322
Q ss_pred HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCc--hhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGND--KLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~--~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
..+..++.. .|......++..+..++..- +--..++ ....|.+++--.+....||+.|..||-.+..
T Consensus 409 ------~~i~~~Ilt-~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 409 ------VNISPLILT-ADEPRAVAVIKMLTKLFERLSAEELLNLL-PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred ------HHHhhHHhc-CcchHHHHHHHHHHHHHhhcCHHHHHHhh-hhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 223333323 34344445666666666321 1111112 3577888888888999999999999888764
No 240
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=75.65 E-value=14 Score=38.38 Aligned_cols=95 Identities=20% Similarity=0.262 Sum_probs=63.0
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccc-------hhHhhHHHHHh-------HHHHHHHHhhhH
Q 041050 15 SAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSC-------RDAEMSKLHKT-------LEDETLQKRKLE 80 (408)
Q Consensus 15 ~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-------~~~~~~~~~~~~ 80 (408)
.+..+++.+++++++-.+.+.+++-++.+++.++.++.+..+. ..+++...... +.........++
T Consensus 89 ~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le 168 (546)
T KOG0977|consen 89 KYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALE 168 (546)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 3478999999999999888877777777777666554433332 22233222222 223335556788
Q ss_pred HHHHHHHhhhhhhhHHHHHHHhhhhcccc
Q 041050 81 EEIVILRSQLLQLTFEADQMQKCLERGEF 109 (408)
Q Consensus 81 ~~~~~l~~~l~~~~~~~~~~r~~~~~~~~ 109 (408)
+++..|+.+...+..+-..+|+.++.+.+
T Consensus 169 ~e~~~Lk~en~rl~~~l~~~r~~ld~Etl 197 (546)
T KOG0977|consen 169 DELKRLKAENSRLREELARARKQLDDETL 197 (546)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 88888888888777777778887777643
No 241
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=75.43 E-value=84 Score=33.13 Aligned_cols=135 Identities=16% Similarity=0.100 Sum_probs=76.7
Q ss_pred HHHHHHHhhc---CCCHHHHHHHHHHHHHHh----CCchh-HHHHHhcccHHHHHHhhc----CCCHHHHHHHHHHHHHh
Q 041050 226 ISLLSTTAAD---AEDPQTLRMVAGAIANLC----GNDKL-QMKLRSEGGIRALLGMVR----CGHPDVLSQVARGIANF 293 (408)
Q Consensus 226 i~~Lv~lL~~---~~~~~v~~~a~~aL~nL~----~~~~~-~~~i~~~g~l~~L~~lL~----~~~~~v~~~a~~aL~nL 293 (408)
+..+..++.. ..++.++..+.-+++++. .+... ...+. ...++.+...|. ..+.+.+..+..+|+|+
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVL-EELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhH-HHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 3445555532 234556666666666554 22221 11121 235555665552 34555566778999998
Q ss_pred hccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhcc-C--CCHHHHHHHHHHHHHHccC-chhHHHHHhCCcHH
Q 041050 294 AKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNAN-N--EAAPIRRHIELALCHLAQH-EVNAREMISGGALW 369 (408)
Q Consensus 294 ~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~-~--~~~~v~~~a~~aL~~La~~-~~~~~~l~~~g~i~ 369 (408)
. ++. .++.+..++. . .+..+|..|+++|..++.. +.. +-+
T Consensus 474 g-------------------~~~---------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~ 517 (574)
T smart00638 474 G-------------------HPS---------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQE 517 (574)
T ss_pred C-------------------Chh---------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHH
Confidence 5 333 4455555554 2 2577999999999998864 333 245
Q ss_pred HHHHHHhcCC-HHHHHHHHH-HHHhccHhh
Q 041050 370 ELVRISRDCS-REDIRSLAH-RTLSSSLTF 397 (408)
Q Consensus 370 ~L~~ll~~~~-~~~~~~~A~-~~L~~~~~~ 397 (408)
.|..+..... +.++|-+|. -++.++|+.
T Consensus 518 ~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~ 547 (574)
T smart00638 518 VLLPIYLNRAEPPEVRMAAVLVLMETKPSV 547 (574)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCCH
Confidence 5666665443 335777777 556555654
No 242
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.16 E-value=37 Score=37.15 Aligned_cols=92 Identities=16% Similarity=0.166 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHH
Q 041050 194 EDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLG 273 (408)
Q Consensus 194 ~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~ 273 (408)
+-+.++..++..|..+... .+....+...+.+...+++| .++|+=+.-.|...+..||.- .....++.+..
T Consensus 739 ~qvpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e 809 (982)
T KOG4653|consen 739 DQVPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSE 809 (982)
T ss_pred CcccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHh-------cchhhHHHHHH
Confidence 3467888899999999887 67778889999999999998 567778888999988888821 22344555554
Q ss_pred -hhc---CCCHHHHHHHHHHHHHhh
Q 041050 274 -MVR---CGHPDVLSQVARGIANFA 294 (408)
Q Consensus 274 -lL~---~~~~~v~~~a~~aL~nL~ 294 (408)
... ...++.+-.+..++.++.
T Consensus 810 ~Y~s~k~k~~~d~~lkVGEai~k~~ 834 (982)
T KOG4653|consen 810 EYLSEKKKLQTDYRLKVGEAILKVA 834 (982)
T ss_pred HHHhcccCCCccceehHHHHHHHHH
Confidence 222 111344445555555555
No 243
>PRK11637 AmiB activator; Provisional
Probab=75.12 E-value=62 Score=32.85 Aligned_cols=75 Identities=12% Similarity=0.157 Sum_probs=39.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhhHH
Q 041050 22 EIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLTFE 96 (408)
Q Consensus 22 ~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 96 (408)
.+.+-++.-....+..+.++..+++++.+.......+..++..+.+++.....+-..++.++..+...+.+....
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555544444445555555555555555555555555555555555554433
No 244
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=74.84 E-value=10 Score=32.26 Aligned_cols=84 Identities=12% Similarity=0.043 Sum_probs=60.8
Q ss_pred CcHHHHHHhccCCCHHHHHHHHHHHHHHccC--chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHH-----HH--HhccH
Q 041050 325 GALPWIVQNANNEAAPIRRHIELALCHLAQH--EVNAREMISGGALWELVRISRDCSREDIRSLAH-----RT--LSSSL 395 (408)
Q Consensus 325 g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~-----~~--L~~~~ 395 (408)
.++..|.+-+.++++.++..|...|-.+..+ ..-...+.+.+.+..|+.++....+..++..+. |. +...|
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 120 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNKP 120 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 4677888888889999999999999998887 344566778999999999997544444333333 22 33333
Q ss_pred h------hHHHHHhhhhcC
Q 041050 396 T------FRAEMRRLRIEF 408 (408)
Q Consensus 396 ~------~~~~~~~~~~~~ 408 (408)
. ...+|++-|++|
T Consensus 121 ~l~~i~~~y~~L~~~G~~F 139 (142)
T cd03569 121 QLKYVVDTYQILKAEGHKF 139 (142)
T ss_pred ccHHHHHHHHHHHHcCCCC
Confidence 3 468899999875
No 245
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=74.84 E-value=11 Score=38.59 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=79.6
Q ss_pred hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcc-----------------cHHHHHHhh-cCCCHHH
Q 041050 222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEG-----------------GIRALLGMV-RCGHPDV 282 (408)
Q Consensus 222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g-----------------~l~~L~~lL-~~~~~~v 282 (408)
..||-|.|+.+=.+++++..+..++.+++.+- +....-....+.| .-..|+..| ....+.+
T Consensus 44 ~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~ 123 (728)
T KOG4535|consen 44 PELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQT 123 (728)
T ss_pred CCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 45788887766447788888888888888776 4433322222211 123344444 5677889
Q ss_pred HHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHH-hcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 283 LSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLI-EDGALPWIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 283 ~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~-~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
..++..+|+||.. ..+-.+-.+- -+.++..+.+++++.++.++..+...+..+...
T Consensus 124 ~tq~~kcla~lv~-----------------~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t 180 (728)
T KOG4535|consen 124 VTQIIKCLANLVS-----------------NAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVST 180 (728)
T ss_pred HHHHHHHHHHHHh-----------------cCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhc
Confidence 9999999999996 4444444442 345677888899999999999999888887643
No 246
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=74.80 E-value=20 Score=39.66 Aligned_cols=126 Identities=16% Similarity=0.164 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHH
Q 041050 153 DANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLST 231 (408)
Q Consensus 153 ~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~ 231 (408)
.+.++.+++-.|++++. ++....+ .+|.|++-|.-.++..+|...+-+++.+|.... ++-..-||.+.+
T Consensus 944 ~~~vra~~vvTlakmcLah~~LaKr-----~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-----am~d~YiP~I~~ 1013 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRLAKR-----LMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-----AMTDRYIPMIAA 1013 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-----HHHHHhhHHHHH
Confidence 45688999999999987 4444432 488899988866677888888888887777622 222335788888
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhccc---HHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 232 TAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGG---IRALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 232 lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~---l~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
.| .++++-+++++.-.|++|-. ..++..+| +..++.++ ..+++++..|-.+++.+-.
T Consensus 1014 ~L-~Dp~~iVRrqt~ilL~rLLq-----~~~vKw~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1014 SL-CDPSVIVRRQTIILLARLLQ-----FGIVKWNGELFIRFMLALL-DANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred Hh-cCchHHHHHHHHHHHHHHHh-----hhhhhcchhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHh
Confidence 87 56888999999999999862 22333333 33344443 4567777766666665543
No 247
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=74.11 E-value=27 Score=27.75 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=50.9
Q ss_pred hCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHH
Q 041050 180 AGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAI 249 (408)
Q Consensus 180 ~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL 249 (408)
..-+..|+...+. ++......+...|..+... |.....+.+-|+...|-++ ++..++.....+-.++
T Consensus 29 ~~Ll~~LleWFnf-~~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~kl-r~~~~~~~~~~id~il 95 (98)
T PF14726_consen 29 RLLLKQLLEWFNF-PPVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKL-RPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHhCC-CCCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHH-HhcCCHHHHHHHHHHH
Confidence 3447788888884 5555777789999999999 9999999999999987666 5666676665554444
No 248
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=74.03 E-value=74 Score=29.39 Aligned_cols=138 Identities=16% Similarity=0.105 Sum_probs=80.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh-hhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHH
Q 041050 183 LSSLLMLLRSFEDETIRRVAAGAIANLAMNAE-ANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQM 260 (408)
Q Consensus 183 i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~ 260 (408)
++.|+.-+....++.++...+.+|..++.+ + .+...+ +..|..+. +.++......+.+.+..+- .++..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~-~~~~~~~v-----~~~L~~L~-~~~~~~~~~~~~rLl~~lw~~~~r~f- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACH-KNVCVPPV-----LQTLVSLV-EQGSLELRYVALRLLTLLWKANDRHF- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhcc-CccchhHH-----HHHHHHHH-cCCchhHHHHHHHHHHHHHHhCchHH-
Confidence 455666566567899999999999999998 4 333333 34455554 4455455445566666664 333222
Q ss_pred HHHhcccHHHHHHh-----h---c--CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHH
Q 041050 261 KLRSEGGIRALLGM-----V---R--CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWI 330 (408)
Q Consensus 261 ~i~~~g~l~~L~~l-----L---~--~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~L 330 (408)
+.++.++.. . . ....+.....+.++..++. ..++ .-..+++.+
T Consensus 74 -----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~-----------------~~p~-----~g~~ll~~l 126 (234)
T PF12530_consen 74 -----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICC-----------------SRPD-----HGVDLLPLL 126 (234)
T ss_pred -----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHH-----------------hChh-----hHHHHHHHH
Confidence 333333333 1 1 1122333344466667764 2222 111357777
Q ss_pred HHhc-cCCCHHHHHHHHHHHHHHccC
Q 041050 331 VQNA-NNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 331 v~lL-~~~~~~v~~~a~~aL~~La~~ 355 (408)
..++ ++.++.++..+..+|..++..
T Consensus 127 s~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 127 SGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHH
Confidence 8888 677888888899999998843
No 249
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.88 E-value=3.6 Score=40.16 Aligned_cols=63 Identities=19% Similarity=0.152 Sum_probs=52.3
Q ss_pred HHHHHHHhccCChhhHHHHHhcCcHHHHHHH-hhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHh
Q 041050 202 AAGAIANLAMNAEANQELIMAQGGISLLSTT-AADAEDPQTLRMVAGAIANLC-GNDKLQMKLRS 264 (408)
Q Consensus 202 A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~ 264 (408)
....|++||..++++|+.+.+.||++.++.- --++.+|=++..+.-++.+|. .|.+||+.+..
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 5668999999889999999999999976643 235677899999999999998 77788887753
No 250
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=73.78 E-value=26 Score=30.47 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=24.6
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHHcCCchhH
Q 041050 142 LHKILSLLE-SEDANVRIHAVKVVANLAAEEANQ 174 (408)
Q Consensus 142 v~~Ll~lL~-s~~~~v~~~A~~aL~nLa~~~~~~ 174 (408)
++.|+.+|+ ..+..+|..++++|+.|..-+..+
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~ 45 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYK 45 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHH
Confidence 455667777 456899999999999998733333
No 251
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=73.56 E-value=1.3e+02 Score=32.12 Aligned_cols=167 Identities=14% Similarity=0.185 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHHcCCchhHHHHHH-h---CCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHH
Q 041050 153 DANVRIHAVKVVANLAAEEANQEKIVE-A---GGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISL 228 (408)
Q Consensus 153 ~~~v~~~A~~aL~nLa~~~~~~~~i~~-~---g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~ 228 (408)
..+++.-|+.+|+-+..+...-..++. . ..+..++..+. -++.-+-.++..|+|+-.+ +.+++.+... ...
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~--~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~ 631 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN--ADPANQLLVVRCLANLFSN-PAGRELFMSR--LES 631 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc--cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHH
Confidence 344555666666655543322222222 1 22445555555 2456677789999999999 9998888765 232
Q ss_pred HHHHh---hcCCCHHHHHHHHHHHHHHh--CCchhHHHHHhcccHHHHHHhhc---CCCHHH--HHHHHHHHHHhhccch
Q 041050 229 LSTTA---ADAEDPQTLRMVAGAIANLC--GNDKLQMKLRSEGGIRALLGMVR---CGHPDV--LSQVARGIANFAKCES 298 (408)
Q Consensus 229 Lv~lL---~~~~~~~v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~L~~lL~---~~~~~v--~~~a~~aL~nL~~~~~ 298 (408)
++..+ ...++..+....+....|++ --..+- +.++.+.+...+. .+-+++ ....+.||.+|+
T Consensus 632 i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~---- 703 (745)
T KOG0301|consen 632 ILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLM---- 703 (745)
T ss_pred HhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhc----
Confidence 22222 23344566665555555654 111110 1345554444442 222222 233445555655
Q ss_pred hhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC-CCHHHHHHHH
Q 041050 299 RAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN-EAAPIRRHIE 346 (408)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v~~~a~ 346 (408)
-.+.....+...--+.++++-+++ .+.+.....+
T Consensus 704 --------------t~~~~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a 738 (745)
T KOG0301|consen 704 --------------TVDASVIQLAKNRSVDSIAKKLKEAVSNPSGKNIA 738 (745)
T ss_pred --------------cccHHHHHHHHhcCHHHHHHHHHHhccCchhhHHH
Confidence 345455555555566777776653 2333333333
No 252
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=72.70 E-value=80 Score=29.18 Aligned_cols=136 Identities=15% Similarity=0.175 Sum_probs=82.0
Q ss_pred HHHHH-hhcCCCHHHHHHHHHHHHHHcCCc-hhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050 143 HKILS-LLESEDANVRIHAVKVVANLAAEE-ANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 143 ~~Ll~-lL~s~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
+.++. +-+..+++.+...+..|..++..+ .+...+ +..|..+... .....+..+...+..+-..++..-
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~-~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQ-GSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcC-CchhHHHHHHHHHHHHHHhCchHH---
Confidence 44443 445788999999999999999855 444333 4445555553 344444556666666654422111
Q ss_pred HhcCcHHHHHHH---------hhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhh-cCCCHHHHHHHHHH
Q 041050 221 MAQGGISLLSTT---------AADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMV-RCGHPDVLSQVARG 289 (408)
Q Consensus 221 ~~~g~i~~Lv~l---------L~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL-~~~~~~v~~~a~~a 289 (408)
+.+..++.. ..++..-+.....+..+..+| .+++ .....++.|...+ ..+++.++..+..+
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 222322222 011222334445567888888 4444 2334577788888 78888888999999
Q ss_pred HHHhhc
Q 041050 290 IANFAK 295 (408)
Q Consensus 290 L~nL~~ 295 (408)
|+.|+.
T Consensus 146 l~~Lc~ 151 (234)
T PF12530_consen 146 LAPLCE 151 (234)
T ss_pred HHHHHH
Confidence 999973
No 253
>PRK09169 hypothetical protein; Validated
Probab=72.38 E-value=1.9e+02 Score=35.66 Aligned_cols=154 Identities=21% Similarity=0.204 Sum_probs=80.8
Q ss_pred HHHhcCHHHHHHhhc-CCCHHHHHHHHHHHHHH-cCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHH-HhccC
Q 041050 136 LFEQVGLHKILSLLE-SEDANVRIHAVKVVANL-AAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIA-NLAMN 212 (408)
Q Consensus 136 l~~~~~v~~Ll~lL~-s~~~~v~~~A~~aL~nL-a~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~-nLa~~ 212 (408)
-+...+|..+++.|+ -++......++..|..- ..++..+..+ ..-.+..+++-|+.=++.+..+.++..|+ .|+.+
T Consensus 201 al~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l-~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~ 279 (2316)
T PRK09169 201 AMDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSL-RAQEVALLLNALSKWPDDEACRQAAEALAARLARE 279 (2316)
T ss_pred hcchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhc-CHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Confidence 344445666676666 56666667777777644 4455444332 33356777777764444455555666665 45555
Q ss_pred ChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHH-HHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHH
Q 041050 213 AEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIA-NLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIA 291 (408)
Q Consensus 213 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~-nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~ 291 (408)
+..+..+-..+ |.-.++-|++-++....+.++..|+ .|+..+.+...+--.+.-..|-.+-+-++.+....++.+|+
T Consensus 280 -~~lr~~~~~Q~-vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA 357 (2316)
T PRK09169 280 -PGLRLALDPQG-VANALNALSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALA 357 (2316)
T ss_pred -hhhhhhcCHHH-HHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 66666544443 4444444444444444444444443 45555555444433444444444445555555554554444
Q ss_pred H
Q 041050 292 N 292 (408)
Q Consensus 292 n 292 (408)
.
T Consensus 358 ~ 358 (2316)
T PRK09169 358 A 358 (2316)
T ss_pred H
Confidence 3
No 254
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.05 E-value=54 Score=37.14 Aligned_cols=148 Identities=14% Similarity=0.144 Sum_probs=85.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC----CchhHHHHHHhCCHHHHHHHHcCC--CCHHHHHHH-HHHHHHhccCCh
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA----EEANQEKIVEAGGLSSLLMLLRSF--EDETIRRVA-AGAIANLAMNAE 214 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~----~~~~~~~i~~~g~i~~L~~lL~~~--~~~~v~~~A-~~aL~nLa~~~~ 214 (408)
||.++=.++..|...|..|...|..|+. .+..-++ ....|...+..+... .+....... +-++..+..+
T Consensus 740 I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e-- 815 (1176)
T KOG1248|consen 740 IPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE-- 815 (1176)
T ss_pred HHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH--
Confidence 3434433378889999999999988872 1111111 011244444444321 232222222 3344444333
Q ss_pred hhHHHHHhcCcHHHHHHHhh---cCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHH
Q 041050 215 ANQELIMAQGGISLLSTTAA---DAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGI 290 (408)
Q Consensus 215 ~~~~~i~~~g~i~~Lv~lL~---~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL 290 (408)
...+.+.+-++.++..+. .+..+.+...|++++.-++ ..|+..-.-...-.++.+..+++.....++..+-..|
T Consensus 816 --~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Ll 893 (1176)
T KOG1248|consen 816 --FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLL 893 (1176)
T ss_pred --HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333444444444443321 5678999999999999998 6666655444445777788877777777777777777
Q ss_pred HHhhc
Q 041050 291 ANFAK 295 (408)
Q Consensus 291 ~nL~~ 295 (408)
-.|.+
T Consensus 894 ekLir 898 (1176)
T KOG1248|consen 894 EKLIR 898 (1176)
T ss_pred HHHHH
Confidence 77765
No 255
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.64 E-value=68 Score=33.00 Aligned_cols=101 Identities=11% Similarity=0.093 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHH-hhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccC
Q 041050 236 AEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLG-MVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATG 313 (408)
Q Consensus 236 ~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~-lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~ 313 (408)
+++..++..|++.|.|.+ +.|.-...... -.+..++. +....+.+|+-++..+|..+... ..
T Consensus 269 dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~---------------~~ 332 (533)
T KOG2032|consen 269 DPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK---------------AS 332 (533)
T ss_pred CchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh---------------hh
Confidence 344578999999999998 43433322222 23344444 44666788999999888887730 01
Q ss_pred ChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050 314 VKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ 354 (408)
Q Consensus 314 ~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~ 354 (408)
+.+....++ .+.-.+..+..+++++.|..+...++.|+.
T Consensus 333 ~~~l~~~~l--~ialrlR~l~~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 333 NDDLESYLL--NIALRLRTLFDSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred hcchhhhch--hHHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence 122211122 233356667788999999999888888774
No 256
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=69.71 E-value=71 Score=27.76 Aligned_cols=108 Identities=15% Similarity=0.237 Sum_probs=67.1
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCc--HHHHHHHhhcCCCHHHHHHHHHHHHHHh----CCc
Q 041050 183 LSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGG--ISLLSTTAADAEDPQTLRMVAGAIANLC----GND 256 (408)
Q Consensus 183 i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~--i~~Lv~lL~~~~~~~v~~~a~~aL~nL~----~~~ 256 (408)
+..+.++|.+ .++..|-.++..+.-++.+++ .+.+.+.++ +..|+..|.+.+.+.+...++.++..|. +-+
T Consensus 27 ~~ri~~LL~s-~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 27 VTRINSLLQS-KSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHhCC-CChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 5567788874 566777777777766665521 344434433 2467788877777889999999999886 445
Q ss_pred hhHHHHHhcc---cHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 257 KLQMKLRSEG---GIRALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 257 ~~~~~i~~~g---~l~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
+...++.... .++.+++++.. +.....++.+|..+-.
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 5554544332 23333444432 4556677777777764
No 257
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=69.64 E-value=1.2e+02 Score=29.74 Aligned_cols=159 Identities=16% Similarity=0.186 Sum_probs=108.6
Q ss_pred HHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-Cc-hhHHHHHHhCC--HHHHHHHHcCC----CC--------HH
Q 041050 134 TKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EE-ANQEKIVEAGG--LSSLLMLLRSF----ED--------ET 197 (408)
Q Consensus 134 ~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~-~~~~~i~~~g~--i~~L~~lL~~~----~~--------~~ 197 (408)
+.+++.. +..+...|++....+...+++.|..++. +. .....+...=- .+.+..++... .+ +.
T Consensus 51 ~~iL~~~-~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~s 129 (330)
T PF11707_consen 51 RSILQNH-LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPS 129 (330)
T ss_pred HHHHHHH-HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcC
Confidence 4455554 7777888998889999999999999987 43 55666655422 45666666321 11 27
Q ss_pred HHHHHHHHHHH-hccCChhhHHHHHhcCc-HHHHHHHhhcCCCHHHHHHHHHHHHH-HhCCc----hhHHHHHhcccHHH
Q 041050 198 IRRVAAGAIAN-LAMNAEANQELIMAQGG-ISLLSTTAADAEDPQTLRMVAGAIAN-LCGND----KLQMKLRSEGGIRA 270 (408)
Q Consensus 198 v~~~A~~aL~n-La~~~~~~~~~i~~~g~-i~~Lv~lL~~~~~~~v~~~a~~aL~n-L~~~~----~~~~~i~~~g~l~~ 270 (408)
+|...+..+.. |...++..+..+.+.++ +..+..-|. .+++++...++.++.. +..++ ..+-.+-+...+..
T Consensus 130 iR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~-~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~ 208 (330)
T PF11707_consen 130 IRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLR-KDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQ 208 (330)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhccc-CCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHH
Confidence 88887766654 44444777777776654 455666664 4777888888888884 55554 33446667778888
Q ss_pred HHHhhcCCCH----HHHHHHHHHHHHhh
Q 041050 271 LLGMVRCGHP----DVLSQVARGIANFA 294 (408)
Q Consensus 271 L~~lL~~~~~----~v~~~a~~aL~nL~ 294 (408)
|..+...+++ .+...+-..|..+|
T Consensus 209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lc 236 (330)
T PF11707_consen 209 LASLYSRDGEDEKSSVADLVHEFLLALC 236 (330)
T ss_pred HHHHhcccCCcccchHHHHHHHHHHHHh
Confidence 9997776666 77777778888877
No 258
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=69.50 E-value=34 Score=32.94 Aligned_cols=36 Identities=31% Similarity=0.476 Sum_probs=18.8
Q ss_pred chhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhh
Q 041050 57 CRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQ 92 (408)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 92 (408)
.+..++..++++|+.+...+..++.++..+...+..
T Consensus 79 ~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~ 114 (312)
T PF00038_consen 79 NLKEELEDLRRKYEEELAERKDLEEELESLRKDLDE 114 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 334444455555555555555555555555544443
No 259
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.36 E-value=1.1e+02 Score=32.98 Aligned_cols=141 Identities=13% Similarity=0.076 Sum_probs=86.9
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHcC--Cchh----HHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH
Q 041050 146 LSLLESEDANVRIHAVKVVANLAA--EEAN----QEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL 219 (408)
Q Consensus 146 l~lL~s~~~~v~~~A~~aL~nLa~--~~~~----~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 219 (408)
..-|+-.|..||.+|+.++.++-- +|+. .+.+++. -...|..+|+ ++.+.+|-.|..-++.+... .-..
T Consensus 180 ~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~-d~~p~VRS~a~~gv~k~~s~---fWe~ 254 (1005)
T KOG1949|consen 180 WRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLE-DPYPMVRSTAILGVCKITSK---FWEM 254 (1005)
T ss_pred HHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhc-CCCchHHHHHHHHHHHHHHH---HHHH
Confidence 355677999999999999998754 3332 3444443 4678889998 46788888777665554432 1111
Q ss_pred HHhc---CcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 041050 220 IMAQ---GGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANF 293 (408)
Q Consensus 220 i~~~---g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL 293 (408)
|-.+ ..+..+..-+......+|+..+...|-.+..||.....+- -++|++-..|..+...|+-.+.-.|.-+
T Consensus 255 iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le--~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 255 IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLE--QLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHH--HHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 1111 1122233333344445788888888888888887765552 3455565666667777776665555544
No 260
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.46 E-value=1.3e+02 Score=34.19 Aligned_cols=80 Identities=15% Similarity=0.230 Sum_probs=65.4
Q ss_pred HHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhcc---
Q 041050 259 QMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNAN--- 335 (408)
Q Consensus 259 ~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~--- 335 (408)
.+.|.+.|++..|++++-...|..+-+-.+.+..+++ .++.+.......|++..|.+.+.
T Consensus 901 k~~iynagavRvlirslLlnypK~qlefl~lleSlaR-----------------aspfnaelltS~gcvellleIiypfl 963 (2799)
T KOG1788|consen 901 KQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLAR-----------------ASPFNAELLTSAGCVELLLEIIYPFL 963 (2799)
T ss_pred HhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhh-----------------cCCCchhhhhcccHHHHHHHHhhhhh
Confidence 5678889999999999988889999999999999987 78888888889999998888664
Q ss_pred CCCHHHHHHHHHHHHHHccC
Q 041050 336 NEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 336 ~~~~~v~~~a~~aL~~La~~ 355 (408)
++.....-++..++..|+..
T Consensus 964 sgsspfLshalkIvemLgay 983 (2799)
T KOG1788|consen 964 SGSSPFLSHALKIVEMLGAY 983 (2799)
T ss_pred cCCchHhhccHHHHHHHhhc
Confidence 34556667777777777654
No 261
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=66.71 E-value=64 Score=26.96 Aligned_cols=78 Identities=23% Similarity=0.276 Sum_probs=53.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHH----HHHhhhHHHHHHHHhhhhh
Q 041050 17 AEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDET----LQKRKLEEEIVILRSQLLQ 92 (408)
Q Consensus 17 ~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~ 92 (408)
.+......+--|.|+..|-..-+++..++.++.+++.....+..+....+..|.... .++..+++++..++....+
T Consensus 37 ~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~d 116 (132)
T PF07926_consen 37 AKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIED 116 (132)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777777777777777777777766666666666666666665333 5666777777777777666
Q ss_pred hh
Q 041050 93 LT 94 (408)
Q Consensus 93 ~~ 94 (408)
+.
T Consensus 117 L~ 118 (132)
T PF07926_consen 117 LN 118 (132)
T ss_pred HH
Confidence 65
No 262
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=66.43 E-value=29 Score=29.61 Aligned_cols=74 Identities=9% Similarity=0.065 Sum_probs=56.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC-CCHHHHHH
Q 041050 266 GGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN-EAAPIRRH 344 (408)
Q Consensus 266 g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v~~~ 344 (408)
.++++|...+.+++|.++..|+..|-.+..+ ........+...+.+..|+.++.. .+..|+..
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkN----------------CG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~k 100 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAEN----------------CGKRFHQEVASRDFTQELKKLINDRVHPTVKEK 100 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH----------------CCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHH
Confidence 3567788888899999999988888887761 223444556677888889998877 68899999
Q ss_pred HHHHHHHHccC
Q 041050 345 IELALCHLAQH 355 (408)
Q Consensus 345 a~~aL~~La~~ 355 (408)
+...+...+..
T Consensus 101 il~li~~W~~~ 111 (144)
T cd03568 101 LREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHH
Confidence 99888877654
No 263
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=66.30 E-value=28 Score=29.64 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=58.4
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccC
Q 041050 141 GLHKILSLLESEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMN 212 (408)
Q Consensus 141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~ 212 (408)
++..|-.-|++.++.++..|+.+|-.+.. +......+...+.+..|+.++....++.|+..++..+.+-+..
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 35667777889999999999999998887 4667777888888999999997666788999888888766543
No 264
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=65.79 E-value=35 Score=28.48 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=57.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcC--CCCHHHHHHHHHHHHHhccC
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRS--FEDETIRRVAAGAIANLAMN 212 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~--~~~~~v~~~A~~aL~nLa~~ 212 (408)
+..|-.-|+++++.++..|+.+|-.+.. ++.....+.....+..|+.++.. ..++.|+..++..+.+.+..
T Consensus 39 ~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 39 ARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5667777889999999999999999887 45577777776778889999975 35788999998888777655
No 265
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=65.38 E-value=27 Score=31.55 Aligned_cols=103 Identities=13% Similarity=0.103 Sum_probs=47.1
Q ss_pred hhhHHHHHhcCcHHHHHHHhhcCCC-----------------HHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhh
Q 041050 214 EANQELIMAQGGISLLSTTAADAED-----------------PQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMV 275 (408)
Q Consensus 214 ~~~~~~i~~~g~i~~Lv~lL~~~~~-----------------~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL 275 (408)
...|+.+...|++..++.+|...-+ ..+...+...|..+| +|.+|+..+.+. ++.+...+
T Consensus 33 ~~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~ 110 (207)
T PF01365_consen 33 RERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIF 110 (207)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----H
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHH
Confidence 4567778888888888887752111 357788999999999 888999888764 33333333
Q ss_pred cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC
Q 041050 276 RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN 336 (408)
Q Consensus 276 ~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~ 336 (408)
.......--.+..++..+-. +++.....+.+.. +..++.++..
T Consensus 111 ~~~~~~~~~~~~d~l~~i~~-----------------dN~~L~~~i~e~~-I~~~i~ll~~ 153 (207)
T PF01365_consen 111 MQLQIGYGLGALDVLTEIFR-----------------DNPELCESISEEH-IEKFIELLRK 153 (207)
T ss_dssp HCCCH-TTHHHHHHHHHHHT-----------------T-----------------------
T ss_pred HHhhccCCchHHHHHHHHHH-----------------CcHHHHHHhhHHH-HHHHHHHHHH
Confidence 22111111134455555554 6666666666544 8888888876
No 266
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=64.68 E-value=47 Score=34.36 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=52.1
Q ss_pred HHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHh---ccCC----------hhhHHHHHhcCcHHHHHHHhhcCCCHH
Q 041050 174 QEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANL---AMNA----------EANQELIMAQGGISLLSTTAADAEDPQ 240 (408)
Q Consensus 174 ~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nL---a~~~----------~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 240 (408)
.+.+.+++.|+.|+.+|....+..++..|+.+|..| +.+. ...-..+.....+..|+..+.......
T Consensus 55 lewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s 134 (475)
T PF04499_consen 55 LEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGS 134 (475)
T ss_pred HHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcc
Confidence 344556888999999998667888999888777666 3331 122344556666777776654322244
Q ss_pred HHHHHHHHHHHHh
Q 041050 241 TLRMVAGAIANLC 253 (408)
Q Consensus 241 v~~~a~~aL~nL~ 253 (408)
....+++++..|.
T Consensus 135 ~lvn~v~IlieLI 147 (475)
T PF04499_consen 135 SLVNGVSILIELI 147 (475)
T ss_pred hHHHHHHHHHHHH
Confidence 5566667776665
No 267
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=64.51 E-value=61 Score=28.88 Aligned_cols=58 Identities=17% Similarity=0.211 Sum_probs=45.9
Q ss_pred CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHH
Q 041050 14 ASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLED 71 (408)
Q Consensus 14 ~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (408)
..+...+-.....||+|..|.+.+.+--..|+.|+++....++.+..|+.++..-+..
T Consensus 56 ~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 56 EEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWER 113 (182)
T ss_pred ccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566668888999999999998888888889888888888888888876665553
No 268
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=64.48 E-value=1.7e+02 Score=34.47 Aligned_cols=105 Identities=13% Similarity=0.142 Sum_probs=67.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC-Cchh-HHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA-EEAN-QEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL 219 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~-~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 219 (408)
+..++..|..+...+|..|+++|.++.. ++.. ...-+..+.. .-+. +....||..|+..++......++....
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh----~R~~-DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVH----GRLN-DSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHH----Hhhc-cchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 5667788888999999999999999987 4432 2222333222 2233 246789999999998544432555444
Q ss_pred HHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCch
Q 041050 220 IMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDK 257 (408)
Q Consensus 220 i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~ 257 (408)
+.+ .+.+-. .++...||..|...+..+| ..|.
T Consensus 893 yY~-----~i~erI-lDtgvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 893 YYD-----QIIERI-LDTGVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred HHH-----HHHhhc-CCCchhHHHHHHHHHHHHHHhCCC
Confidence 432 222222 2345578888888888888 4443
No 269
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=64.00 E-value=26 Score=27.46 Aligned_cols=71 Identities=25% Similarity=0.206 Sum_probs=50.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE 214 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~ 214 (408)
+...+..+.++.+.+|.+++..|..|..... ...+-....+..++..|+ ++++=+=-.|+..|..|+...|
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~-d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLK-DEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcC-CCCchHHHHHHHHHHHHHHHCh
Confidence 4566788889999999999999999987544 111112334566667777 4677777778899988887633
No 270
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=63.88 E-value=91 Score=26.55 Aligned_cols=53 Identities=13% Similarity=0.288 Sum_probs=31.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHH
Q 041050 18 EDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLE 70 (408)
Q Consensus 18 ~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (408)
..+-.|...-+.....++.+.+++..+....+.++...+-++.+++++.+.+.
T Consensus 38 n~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 38 NCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777777777777777766666555555544444444444444
No 271
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=63.10 E-value=79 Score=26.80 Aligned_cols=70 Identities=7% Similarity=0.110 Sum_probs=52.7
Q ss_pred cHHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCchhHHHHHhcccHHHHHHhhcC------CCHHHHHHHHHHHHHhhc
Q 041050 225 GISLLSTTAADAEDPQTLRMVAGAIANLC--GNDKLQMKLRSEGGIRALLGMVRC------GHPDVLSQVARGIANFAK 295 (408)
Q Consensus 225 ~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~L~~lL~~------~~~~v~~~a~~aL~nL~~ 295 (408)
++..|..-| .+.+|.+...|+.+|-.+. ..+..+..+.+.+.+.-|++++.. .++.|+..++..+..-+.
T Consensus 39 a~rai~krl-~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKI-QSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 345566665 4677888888888888887 335677888888899889999852 468899988887777664
No 272
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=62.02 E-value=36 Score=28.48 Aligned_cols=71 Identities=11% Similarity=0.128 Sum_probs=55.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHH-HHHHHHHHHHHhccC
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDET-IRRVAAGAIANLAMN 212 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~-v~~~A~~aL~nLa~~ 212 (408)
+..|-.-|+++++.++..|+.+|-.+.. ++.....+.....+..|..++.+..+.. |+..++..+.+-+..
T Consensus 39 ~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 39 VRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 5566677889999999999999999887 4667777878878999999998655544 888787777655443
No 273
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.61 E-value=57 Score=31.58 Aligned_cols=128 Identities=10% Similarity=0.106 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCchhHHHHHhcccHHHHHHhh
Q 041050 198 IRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC--GNDKLQMKLRSEGGIRALLGMV 275 (408)
Q Consensus 198 v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~L~~lL 275 (408)
....++..|..|+..+++.....+.. .|..+++-+ +..--.|-+.|+.+++.|. .+....+.+ .+.+..|+.-.
T Consensus 104 ~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvksl-KNlRS~VsraA~~t~~difs~ln~~i~~~l--d~lv~~Ll~ka 179 (334)
T KOG2933|consen 104 DKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSL-KNLRSAVSRAACMTLADIFSSLNNSIDQEL--DDLVTQLLHKA 179 (334)
T ss_pred HHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhh
Confidence 33334455555554433322222221 344455554 3344578889999999887 343433311 12222222222
Q ss_pred cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHc
Q 041050 276 RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLA 353 (408)
Q Consensus 276 ~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La 353 (408)
..++.-|+..|-.+|-.++.. ..-..+++.|+..+++.++.++..++....++.
T Consensus 180 ~~dnrFvreda~kAL~aMV~~------------------------vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 180 SQDNRFVREDAEKALVAMVNH------------------------VTPQKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred cccchHHHHHHHHHHHHHHhc------------------------cChHHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 344556888888888888741 011236778888888888888888876665544
No 274
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=60.94 E-value=40 Score=28.79 Aligned_cols=71 Identities=17% Similarity=0.228 Sum_probs=58.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccC
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMN 212 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~ 212 (408)
+..|..-|.+.++.++..|+.+|-.++. ++.....+.....+..|+.++....++.|+..++..|...+..
T Consensus 39 ~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 39 LKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 5666677789999999999999999987 5667778888888999999998656788999888888776554
No 275
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=60.35 E-value=26 Score=37.36 Aligned_cols=186 Identities=11% Similarity=0.105 Sum_probs=111.2
Q ss_pred HHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh
Q 041050 137 FEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN 216 (408)
Q Consensus 137 ~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~ 216 (408)
++.+.+|.|++++++.+..+|..=+.-+-+.. +.....+++...+|.+..-+. +.++.+|..++..+.-|+.- = +
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i--~~Lt~~~~~d~I~phv~~G~~-DTn~~Lre~Tlksm~~La~k-L-~ 401 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI--DHLTKQILNDQIFPHVALGFL-DTNATLREQTLKSMAVLAPK-L-S 401 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHh--hhcCHHhhcchhHHHHHhhcc-cCCHHHHHHHHHHHHHHHhh-h-c
Confidence 66777899999999999999877666555432 333455666667888888887 46889999999998877664 1 1
Q ss_pred HHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhccc-HHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 217 QELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGG-IRALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 217 ~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~-l~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
.. .....-+..+-.+ ..+++++++....-++.-++..... .. ..+. ..+..+-++++-+.-+..+.++++....
T Consensus 402 ~~-~Ln~Ellr~~ar~-q~d~~~~irtntticlgki~~~l~~--~~-R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 402 KR-NLNGELLRYLARL-QPDEHGGIRTNTTICLGKIAPHLAA--SV-RKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred hh-hhcHHHHHHHHhh-CccccCcccccceeeecccccccch--hh-hccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 11 1111112233333 2456677887777777666622111 11 2222 2333334455544556666666665442
Q ss_pred cchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHH
Q 041050 296 CESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHL 352 (408)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~L 352 (408)
+....+ +...++|.++.+.-+++..+|..|..++.-.
T Consensus 477 ---------------~~~~~~-----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 477 ---------------YFDQSE-----VANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred ---------------ccchhh-----hhhhccccccccccCcccchhhHHHHHHHHH
Confidence 111111 2235777888888777777888777776543
No 276
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=60.34 E-value=46 Score=28.23 Aligned_cols=73 Identities=11% Similarity=-0.032 Sum_probs=53.8
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC------CCH
Q 041050 266 GGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN------EAA 339 (408)
Q Consensus 266 g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~------~~~ 339 (408)
.++.+|...+.+++|.++..|+..|-.+..+ ........+...+.+..|+.++.. .+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkN----------------CG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~ 101 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKN----------------CGERFHSEVGKFRFLNELIKLVSPKYLGSRTSE 101 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH----------------cCHHHHHHHHhHHHHHHHHHHhccccCCCCCCH
Confidence 3567788889999999988888777777651 123344556677888888888853 468
Q ss_pred HHHHHHHHHHHHHcc
Q 041050 340 PIRRHIELALCHLAQ 354 (408)
Q Consensus 340 ~v~~~a~~aL~~La~ 354 (408)
.|+..+...+...+.
T Consensus 102 ~Vk~kil~li~~W~~ 116 (139)
T cd03567 102 KVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHHHHH
Confidence 899888888877664
No 277
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=60.32 E-value=12 Score=30.31 Aligned_cols=42 Identities=31% Similarity=0.346 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHH
Q 041050 158 IHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRR 200 (408)
Q Consensus 158 ~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~ 200 (408)
...+..+..||..|+.-..+++.|+++.|+.+|. +++.++..
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~-HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLS-HENTDIAI 105 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHC-CCCcceeh
Confidence 3455666788888999999999999999999998 56666543
No 278
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=60.06 E-value=43 Score=32.21 Aligned_cols=79 Identities=27% Similarity=0.390 Sum_probs=58.1
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-------hhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHh
Q 041050 16 AAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRL-------GQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRS 88 (408)
Q Consensus 16 ~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 88 (408)
+..++..+++.+++-...+..++-++.+++..+ +...........++..++|-++++...+..++..+..|+.
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~e 131 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKE 131 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHH
Confidence 567788888888887777655555555554444 4444444577888889999999999999999999888888
Q ss_pred hhhhhh
Q 041050 89 QLLQLT 94 (408)
Q Consensus 89 ~l~~~~ 94 (408)
.+.-..
T Consensus 132 El~fl~ 137 (312)
T PF00038_consen 132 ELEFLK 137 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776554
No 279
>PRK10884 SH3 domain-containing protein; Provisional
Probab=59.70 E-value=52 Score=29.92 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhh
Q 041050 35 KTAEEELNKLKSRLG 49 (408)
Q Consensus 35 ~~~~~e~~~~~~~~~ 49 (408)
.++|.|+..++.++.
T Consensus 96 p~le~el~~l~~~l~ 110 (206)
T PRK10884 96 PDLENQVKTLTDKLN 110 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 280
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=59.24 E-value=58 Score=27.17 Aligned_cols=71 Identities=11% Similarity=0.061 Sum_probs=56.4
Q ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChh-hHHHHHhcCcHHHHHHHhhc--CCCHHHHHHHHHHHHHHh
Q 041050 182 GLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEA-NQELIMAQGGISLLSTTAAD--AEDPQTLRMVAGAIANLC 253 (408)
Q Consensus 182 ~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~-~~~~i~~~g~i~~Lv~lL~~--~~~~~v~~~a~~aL~nL~ 253 (408)
++..|..-|.+ .++.++..|+.+|-.+..++.. ....+.....+..|+.++.. ..++.|+..++..+.+.+
T Consensus 38 a~raL~krl~~-~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 38 AARAIRKKIKY-GNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 46677777874 6889999999999999888644 67777776777778888865 467889999999988776
No 281
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=59.02 E-value=49 Score=35.36 Aligned_cols=72 Identities=14% Similarity=0.048 Sum_probs=54.6
Q ss_pred HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
++.+.+|.|+.++ ...|..+|...+.-+-+.. +.....+.+...++.+..-+.+.++-++.++..++..|+.
T Consensus 327 yq~~i~p~l~kLF-~~~Dr~iR~~LL~~i~~~i--~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 327 YQVRIIPVLLKLF-KSPDRQIRLLLLQYIEKYI--DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred cccchhhhHHHHh-cCcchHHHHHHHHhHHHHh--hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 4455788888987 6788788865554444433 3344566777888999999999999999999999999986
No 282
>PRK11637 AmiB activator; Provisional
Probab=58.36 E-value=62 Score=32.88 Aligned_cols=77 Identities=16% Similarity=0.171 Sum_probs=38.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhh
Q 041050 17 AEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQL 93 (408)
Q Consensus 17 ~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 93 (408)
.+.+..+.+.++.-....+..+.+++.+.+++..+.........++..+.+.+.....+-..+++++..+...+...
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555444444445555555555444444444455555555555554444445555555555554444
No 283
>PRK10884 SH3 domain-containing protein; Provisional
Probab=58.13 E-value=1.2e+02 Score=27.65 Aligned_cols=7 Identities=29% Similarity=0.354 Sum_probs=2.8
Q ss_pred HHHHhcC
Q 041050 135 KLFEQVG 141 (408)
Q Consensus 135 ~l~~~~~ 141 (408)
+.|-.||
T Consensus 172 ~wf~~Gg 178 (206)
T PRK10884 172 QWFMYGG 178 (206)
T ss_pred HHHHHch
Confidence 3344443
No 284
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=57.95 E-value=66 Score=24.92 Aligned_cols=22 Identities=27% Similarity=0.367 Sum_probs=10.7
Q ss_pred chhHhhHHHHHhHHHHHHHHhh
Q 041050 57 CRDAEMSKLHKTLEDETLQKRK 78 (408)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~ 78 (408)
.+..|+..+++++..+...+..
T Consensus 60 ~l~~E~e~L~~~l~~e~~Ek~~ 81 (87)
T PF12709_consen 60 ALKRENEQLKKKLDTEREEKQE 81 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555444433
No 285
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=57.66 E-value=1.9e+02 Score=28.15 Aligned_cols=206 Identities=10% Similarity=0.077 Sum_probs=136.3
Q ss_pred HHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHh--CCHHHHHHHHcCCCC-HHHHHHHHHHHHHhc
Q 041050 135 KLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEA--GGLSSLLMLLRSFED-ETIRRVAAGAIANLA 210 (408)
Q Consensus 135 ~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~--g~i~~L~~lL~~~~~-~~v~~~A~~aL~nLa 210 (408)
.+...|.+..++..+...+-+.+..++.+..|+-. .-..+...++. --...+-.++....+ +++.-++...+....
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEci 153 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECI 153 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 45666778888999998888888888888888765 22222222221 123444445543343 677776777777777
Q ss_pred cCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhccc----HHHHHHhhcCCCHHHHHH
Q 041050 211 MNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGG----IRALLGMVRCGHPDVLSQ 285 (408)
Q Consensus 211 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~----l~~L~~lL~~~~~~v~~~ 285 (408)
.+ +...+.|.+..-.......+ ..+.-++..-|..+.-.+. ........+...+. ...--.++++.+--++++
T Consensus 154 rh-e~LakiiL~s~~~~~FF~~v-q~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 154 RH-EFLAKIILESTNFEKFFLYV-QLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred hh-HHHHHHHHcchhHHHHHHHH-hccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 77 88888888888887776665 3344567777777777665 44444444443332 333556778898899999
Q ss_pred HHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc
Q 041050 286 VARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE 356 (408)
Q Consensus 286 a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 356 (408)
+..+++.+-...++.... ..-+....-+..++.+|+.+...++.+|--+.+.+..++
T Consensus 232 s~kllg~llldr~N~~~M--------------~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVM--------------TKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHHhHHHHHhCCCcHHHH--------------HHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 999999987532222111 001112345778888999999999999999999998874
No 286
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=57.14 E-value=16 Score=29.53 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHH
Q 041050 243 RMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLS 284 (408)
Q Consensus 243 ~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~ 284 (408)
...+..+..|+..|+.-..+++.|+++.|+++|.+++.++..
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 356677888899999999999999999999999998887643
No 287
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=56.35 E-value=41 Score=35.65 Aligned_cols=78 Identities=23% Similarity=0.271 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhhHHHHHHHhhhh
Q 041050 28 QNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLTFEADQMQKCLE 105 (408)
Q Consensus 28 ~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~ 105 (408)
++|..+...+++++..+.+.+.............+..+++.++....+...++++-..+...+..+......+|+.+.
T Consensus 344 ~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~ 421 (569)
T PRK04778 344 ESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLE 421 (569)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777776655444444444566666666666666666666666666666666655555555544
No 288
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=56.21 E-value=86 Score=35.67 Aligned_cols=27 Identities=11% Similarity=0.246 Sum_probs=23.7
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 041050 141 GLHKILSLLESEDANVRIHAVKVVANL 167 (408)
Q Consensus 141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nL 167 (408)
-+|.|+.++++.|+.++..=..+|.+-
T Consensus 692 nvPRLfDLv~~~d~~~r~aFYfaLrdt 718 (1293)
T KOG0996|consen 692 NVPRLFDLVKCKDEKFRPAFYFALRDT 718 (1293)
T ss_pred CcchHhhhhccCCHHHHHHHHHHHhhh
Confidence 589999999999999998888888754
No 289
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.48 E-value=3.7e+02 Score=30.85 Aligned_cols=182 Identities=11% Similarity=0.116 Sum_probs=98.3
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHh
Q 041050 145 ILSLLESEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMA 222 (408)
Q Consensus 145 Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~ 222 (408)
+.+-+.+.+...+...+.+|-.|-. +.++..-+... ||.++-.++ +.+...++.|...|..++.. ..+.+
T Consensus 702 L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~--I~EvIL~~K-e~n~~aR~~Af~lL~~i~~i-----~~~~d 773 (1176)
T KOG1248|consen 702 LLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKL--IPEVILSLK-EVNVKARRNAFALLVFIGAI-----QSSLD 773 (1176)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHH--HHHHHHhcc-cccHHHHhhHHHHHHHHHHH-----Hhhhc
Confidence 3344455566666666666665544 23444444443 666555555 56788888888888888731 11111
Q ss_pred cC------cHHHHHHHhhcC---CCHHHHHHHHHHHHHHhCCchhHHHHHhc----ccHHHHHHhhcCCCHHHHHHHHHH
Q 041050 223 QG------GISLLSTTAADA---EDPQTLRMVAGAIANLCGNDKLQMKLRSE----GGIRALLGMVRCGHPDVLSQVARG 289 (408)
Q Consensus 223 ~g------~i~~Lv~lL~~~---~~~~v~~~a~~aL~nL~~~~~~~~~i~~~----g~l~~L~~lL~~~~~~v~~~a~~a 289 (408)
.| .+...+..+... +.+.+....+-++..+.. ....+++. +.+..+...+.++.+++.+.|.+.
T Consensus 774 ~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~---e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~f 850 (1176)
T KOG1248|consen 774 DGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ---EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGF 850 (1176)
T ss_pred ccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH---HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11 222222222221 111111111223333321 11112222 334556667788999999999999
Q ss_pred HHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050 290 IANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ 354 (408)
Q Consensus 290 L~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~ 354 (408)
+..++. ..++..-.-...-++|.+..+++.....++..+-..|-.|..
T Consensus 851 ikvlv~-----------------~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 851 IKVLVY-----------------KFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred HHHHHH-----------------cCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 999986 333332222333467777777776677777766666666554
No 290
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.60 E-value=1.7e+02 Score=35.23 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=23.1
Q ss_pred cHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 041050 225 GISLLSTTAADAEDPQTLRMVAGAIANLC 253 (408)
Q Consensus 225 ~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~ 253 (408)
++..+..+..++.+|.|++.++.+++-+.
T Consensus 959 ~v~illal~~Ds~~p~VqtwSL~al~~i~ 987 (2067)
T KOG1822|consen 959 SVSILLALATDSTSPVVQTWSLHALALIL 987 (2067)
T ss_pred HHHHHHHHhhcCCCchhhhhHHHHHHHHH
Confidence 45566677777788899999999998886
No 291
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=53.95 E-value=92 Score=32.88 Aligned_cols=63 Identities=19% Similarity=0.262 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHh---hhHHHHHHHHhhhhhhhHHH
Q 041050 35 KTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKR---KLEEEIVILRSQLLQLTFEA 97 (408)
Q Consensus 35 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~l~~~~~~~ 97 (408)
+.+++|+..|+..+++++..++.+..+++.+.+....+..... .+++.+..|...|.+-....
T Consensus 432 e~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~v 497 (652)
T COG2433 432 ERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRV 497 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666666666666666665443322 35566677766666554333
No 292
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=53.61 E-value=88 Score=29.21 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHhh
Q 041050 35 KTAEEELNKLKSRLG 49 (408)
Q Consensus 35 ~~~~~e~~~~~~~~~ 49 (408)
..|.+|-..+...+.
T Consensus 45 d~~~~e~~~L~~e~~ 59 (251)
T PF11932_consen 45 DQWDDEKQELLAEYR 59 (251)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 293
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=53.47 E-value=2e+02 Score=27.05 Aligned_cols=64 Identities=13% Similarity=0.117 Sum_probs=40.3
Q ss_pred HhcCcHHHHHHHhhcCCCHH-------HHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCC--HHHHHHHHHHHH
Q 041050 221 MAQGGISLLSTTAADAEDPQ-------TLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGH--PDVLSQVARGIA 291 (408)
Q Consensus 221 ~~~g~i~~Lv~lL~~~~~~~-------v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~--~~v~~~a~~aL~ 291 (408)
.+..+.++++++++.++++- +-.....+++.++ .|-+..|..++.+++ .-++..|+.+|.
T Consensus 70 re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~-----------~G~~~~L~~li~~~~~~~yvR~aa~~aL~ 138 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG-----------DGDIEPLKELIEDPDADEYVRMAAISALA 138 (249)
T ss_pred hhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh-----------CCCHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 34468899999986544410 1222223333333 456777888887665 447888889999
Q ss_pred Hhhc
Q 041050 292 NFAK 295 (408)
Q Consensus 292 nL~~ 295 (408)
.++.
T Consensus 139 ~l~~ 142 (249)
T PF06685_consen 139 FLVH 142 (249)
T ss_pred HHHH
Confidence 9997
No 294
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=52.95 E-value=1e+02 Score=31.10 Aligned_cols=133 Identities=12% Similarity=0.047 Sum_probs=72.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh----------cCCCHHHHHHHHHHHHHhhccc
Q 041050 228 LLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV----------RCGHPDVLSQVARGIANFAKCE 297 (408)
Q Consensus 228 ~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL----------~~~~~~v~~~a~~aL~nL~~~~ 297 (408)
.++..|.+...+..+...+.++.=|+.+...-+-+....-+..|+.+. ..+|..|..++..||.|+..
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf-- 126 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF-- 126 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh--
Confidence 445555444434444455555555554443333222222233333332 12456889999999999998
Q ss_pred hhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC-----CHHHHHHHHHHHHHHcc-CchhHHHH-HhCCcHHH
Q 041050 298 SRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE-----AAPIRRHIELALCHLAQ-HEVNAREM-ISGGALWE 370 (408)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~-----~~~v~~~a~~aL~~La~-~~~~~~~l-~~~g~i~~ 370 (408)
.++..+..+.+...+..+++.+... ..++...=...|.-++. ....+..+ ++.+|++.
T Consensus 127 ---------------~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~ 191 (532)
T KOG4464|consen 127 ---------------HSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLEL 191 (532)
T ss_pred ---------------ccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHH
Confidence 5666667777777777777655321 11222222223333322 23444444 48888888
Q ss_pred HHHHHhc
Q 041050 371 LVRISRD 377 (408)
Q Consensus 371 L~~ll~~ 377 (408)
+-+++.+
T Consensus 192 lt~~led 198 (532)
T KOG4464|consen 192 LTNWLED 198 (532)
T ss_pred HHHHhhc
Confidence 8888764
No 295
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=52.94 E-value=44 Score=30.10 Aligned_cols=101 Identities=12% Similarity=0.152 Sum_probs=45.6
Q ss_pred hhHHHHHhcccHHHHHHhhcC---CC---------------HHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhH
Q 041050 257 KLQMKLRSEGGIRALLGMVRC---GH---------------PDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGR 318 (408)
Q Consensus 257 ~~~~~i~~~g~l~~L~~lL~~---~~---------------~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~ 318 (408)
..|..+.+.|+...++.+++. .. .++...|...|..++. +++.++
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~-----------------~n~~NQ 96 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCR-----------------GNRENQ 96 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHT-----------------T-HHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHH-----------------hCHHHH
Confidence 445666788888888888742 11 3566788899999987 788888
Q ss_pred HHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCch-hHHHHHhCCcHHHHHHHHhc
Q 041050 319 SLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEV-NAREMISGGALWELVRISRD 377 (408)
Q Consensus 319 ~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~-~~~~l~~~g~i~~L~~ll~~ 377 (408)
..+.+ -++++...+.......-..+..+++.+-.+.. -...+. ..-+..++.++..
T Consensus 97 ~~l~~--~~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~-e~~I~~~i~ll~~ 153 (207)
T PF01365_consen 97 KYLFK--HLDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESIS-EEHIEKFIELLRK 153 (207)
T ss_dssp HHHHH--HHH-----HHCCCH-TTHHHHHHHHHHHTT-----------------------
T ss_pred HHHHH--HHhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhh-HHHHHHHHHHHHH
Confidence 87775 35544443332221111234555555555432 222222 2236666666654
No 296
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=52.86 E-value=2.3e+02 Score=27.62 Aligned_cols=187 Identities=15% Similarity=0.084 Sum_probs=119.0
Q ss_pred HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH---HHhcCcHHHHHHHhhcCC-CHHHHHHHHHHHH
Q 041050 175 EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL---IMAQGGISLLSTTAADAE-DPQTLRMVAGAIA 250 (408)
Q Consensus 175 ~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~---i~~~g~i~~Lv~lL~~~~-~~~v~~~a~~aL~ 250 (408)
..+...|.++.|+.-+.. -+-+.++.++.+..|+-..+-..+.. ...+. ...+-.++.... .+++.-.+...+.
T Consensus 73 qef~~~~~l~~lI~~l~~-l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~-~e~~~~lv~~~~~~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPK-LEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETN-PEILDNLVKGYENTPEIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhhhc-ccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhC-HHHHHHHHhhhccchHHHHHHHHHHH
Confidence 456678888888888873 45566777777777775542212211 11111 223334443323 2455444433343
Q ss_pred HHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCc----
Q 041050 251 NLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGA---- 326 (408)
Q Consensus 251 nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~---- 326 (408)
-....+.....+....-+..-...+..+..++-..|..+...+.. .+......+...+.
T Consensus 151 Ecirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt-----------------~Hk~~vaEfl~~n~d~ff 213 (342)
T KOG1566|consen 151 ECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLT-----------------RHKSVVAEFLIRNYDNFF 213 (342)
T ss_pred HHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHH-----------------HhHHHHHHHHHhChhhhH
Confidence 333666666777777777777778888888888888877777764 44444455554332
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHH----hCCcHHHHHHHHhcCCH
Q 041050 327 LPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMI----SGGALWELVRISRDCSR 380 (408)
Q Consensus 327 l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~----~~g~i~~L~~ll~~~~~ 380 (408)
...--.++++++.-+++.+...++.+-.+..|...|. +...+..++.++++++.
T Consensus 214 ~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdksk 271 (342)
T KOG1566|consen 214 AEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSK 271 (342)
T ss_pred HHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccc
Confidence 2235568899999999999999999999977766665 34667888889987653
No 297
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=52.69 E-value=44 Score=30.54 Aligned_cols=61 Identities=25% Similarity=0.265 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhhh---hcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhhH
Q 041050 35 KTAEEELNKLKSRLGQ---YTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLTF 95 (408)
Q Consensus 35 ~~~~~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 95 (408)
+++.++...++++++. +..++++...|..+++..++....+=+++++.+..|++|......
T Consensus 130 ~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~ 193 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQD 193 (216)
T ss_pred HHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4555666666666542 122334555566666666666666656666666667666665543
No 298
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=52.42 E-value=48 Score=27.03 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=32.6
Q ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhc
Q 041050 182 GLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQ 223 (408)
Q Consensus 182 ~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~ 223 (408)
||+.|+.-|. ++++.|...|..+|...|.+ +...+.++..
T Consensus 9 ~i~lLv~QL~-D~~~~V~~~A~~iL~e~c~~-~~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLY-DPSPEVVAAALEILEEACED-KEYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHhc-hhhHHHHHHc
Confidence 6889999998 46789999999999999999 5666655543
No 299
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=52.29 E-value=2.5e+02 Score=27.96 Aligned_cols=132 Identities=15% Similarity=0.047 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHHHcCC-chhHHHHHHhCCHHHHHHHHcC--CCCHHHHHHHHHHHHHhccCChh------------hH
Q 041050 153 DANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSLLMLLRS--FEDETIRRVAAGAIANLAMNAEA------------NQ 217 (408)
Q Consensus 153 ~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~L~~lL~~--~~~~~v~~~A~~aL~nLa~~~~~------------~~ 217 (408)
....|..|+..|..|+.. +..-..++- +.+..++.-..+ ..+..-+..|+..+..|+..... +-
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred cCCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 345677888888888762 211111111 124444432221 24556677788888888876322 22
Q ss_pred HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHH
Q 041050 218 ELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGI 290 (408)
Q Consensus 218 ~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL 290 (408)
..+...-.+|-|. -..+..|-++..|+..+..+..- -..+.+. +.++.++..|.+++.-|...|+.|+
T Consensus 303 ~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~-l~~~~l~--~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQ-LPKEQLL--QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGG-S-HHHHH--HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhh-CCHHHHH--HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 4444444555444 12345677787888888777622 2233332 5789999999999999999998875
No 300
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=51.59 E-value=58 Score=32.29 Aligned_cols=43 Identities=21% Similarity=0.300 Sum_probs=33.8
Q ss_pred CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 041050 14 ASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGS 56 (408)
Q Consensus 14 ~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~ 56 (408)
....++=.++...|+.|+..|+.++++...++++-..+..+++
T Consensus 83 ~~~~~~H~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~ 125 (355)
T PF09766_consen 83 LTEDDEHQLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENK 125 (355)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788999999999999999999988888664444444
No 301
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=51.40 E-value=1.6e+02 Score=27.29 Aligned_cols=52 Identities=23% Similarity=0.266 Sum_probs=27.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhH
Q 041050 22 EIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLE 80 (408)
Q Consensus 22 ~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (408)
.++...++..+.+++++++..++++.+. ....++.+.+++|+..-+.-+.+.
T Consensus 95 ~l~~~~~~~~~~rK~~~~~~~kl~~~~~-------~~~~~l~kskk~Y~~~~ke~~~a~ 146 (251)
T cd07653 95 ELKTLISELRQERKKHLSEGSKLQQKLE-------SSIKQLEKSKKAYEKAFKEAEKAK 146 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555556555555555544 334566667777766554444443
No 302
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=51.31 E-value=2.1e+02 Score=30.99 Aligned_cols=114 Identities=15% Similarity=0.095 Sum_probs=76.2
Q ss_pred cCHHHHHHhhcCCCHHHHHHHHHHHH-HHcCCc--hhHHHHHH----hCCH--------------HHHHHHHcCC-CCHH
Q 041050 140 VGLHKILSLLESEDANVRIHAVKVVA-NLAAEE--ANQEKIVE----AGGL--------------SSLLMLLRSF-EDET 197 (408)
Q Consensus 140 ~~v~~Ll~lL~s~~~~v~~~A~~aL~-nLa~~~--~~~~~i~~----~g~i--------------~~L~~lL~~~-~~~~ 197 (408)
..|..|+.+|.|.+..+.+.+-..+. ++..+. -.-..+++ .|-. ..++..|+.. ..+.
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s~~~~~il~~~~~P~~K~~~~~l~~~~~~~~ 83 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNSQRALEILVGVQEPHDKHLFDKLNDYFVKPS 83 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCcHHHHHHHHhcCCccHHHHHHHHHHHHcCch
Confidence 34677778888777777766666665 333322 11222222 2211 1233333211 2456
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 041050 198 IRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC 253 (408)
Q Consensus 198 v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~ 253 (408)
.|..++..|+.+....+.....|.++..++-|+.+|..+.++.+...|+.+|.-|-
T Consensus 84 ~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 84 YRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred hHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 78889999999888768899999999999999999988888888888888887775
No 303
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=51.25 E-value=90 Score=25.41 Aligned_cols=38 Identities=5% Similarity=0.043 Sum_probs=31.7
Q ss_pred cHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHH
Q 041050 326 ALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMI 363 (408)
Q Consensus 326 ~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~ 363 (408)
+++.|+.-|.+.+++|...|..+|...+.++.+...++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHH
Confidence 56788889998999999999999999998876555555
No 304
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=51.20 E-value=78 Score=26.44 Aligned_cols=72 Identities=13% Similarity=0.024 Sum_probs=52.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC--CHHHHHH
Q 041050 267 GIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE--AAPIRRH 344 (408)
Q Consensus 267 ~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~ 344 (408)
+++.|.+-+.+++|.++..|+..|-.+..+ ........+.+.+.+..|+.++.+. .+.|+..
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkN----------------cg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~k 101 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKN----------------CGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKR 101 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH----------------CCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456688888899999999998888888761 1244455566778888999888764 3338888
Q ss_pred HHHHHHHHcc
Q 041050 345 IELALCHLAQ 354 (408)
Q Consensus 345 a~~aL~~La~ 354 (408)
+...+...+.
T Consensus 102 il~li~~W~~ 111 (133)
T smart00288 102 ILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHH
Confidence 8888877664
No 305
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=51.03 E-value=1.1e+02 Score=32.02 Aligned_cols=60 Identities=23% Similarity=0.334 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhh
Q 041050 31 IHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQL 90 (408)
Q Consensus 31 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 90 (408)
.+....+++++..+++.++.++.......++..+++...++.......+..+...|+.+.
T Consensus 156 ~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~ 215 (546)
T PF07888_consen 156 LKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQL 215 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456666666666666555555444455555555555555544444444444444443
No 306
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=50.11 E-value=1.4e+02 Score=31.24 Aligned_cols=14 Identities=43% Similarity=0.577 Sum_probs=6.0
Q ss_pred hhhHHHHHHHHhhh
Q 041050 77 RKLEEEIVILRSQL 90 (408)
Q Consensus 77 ~~~~~~~~~l~~~l 90 (408)
..+++++..+..+.
T Consensus 223 ~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 223 RELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 307
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=49.98 E-value=1.6e+02 Score=24.99 Aligned_cols=65 Identities=18% Similarity=0.294 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhhHHHHH
Q 041050 35 KTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLTFEADQ 99 (408)
Q Consensus 35 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 99 (408)
..++..+..++.+++....+.+........+++.+..+...-...-+++..++..+.........
T Consensus 69 ~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~ 133 (151)
T PF11559_consen 69 ERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEH 133 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666666777777777766667777777777776666544443
No 308
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=49.94 E-value=1.3e+02 Score=26.92 Aligned_cols=14 Identities=29% Similarity=0.517 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHh
Q 041050 35 KTAEEELNKLKSRL 48 (408)
Q Consensus 35 ~~~~~e~~~~~~~~ 48 (408)
.++.+|+..+++++
T Consensus 39 a~L~~e~~~L~~q~ 52 (193)
T PF14662_consen 39 AQLAEEITDLRKQL 52 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 309
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=49.83 E-value=52 Score=28.48 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 041050 30 EIHMRKTAEEELNKLKSRLGQ 50 (408)
Q Consensus 30 e~~~~~~~~~e~~~~~~~~~~ 50 (408)
...+...++++...++.|+.+
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~ 38 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKE 38 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555443
No 310
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=49.65 E-value=63 Score=25.05 Aligned_cols=70 Identities=27% Similarity=0.362 Sum_probs=37.8
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhhHH
Q 041050 17 AEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLTFE 96 (408)
Q Consensus 17 ~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 96 (408)
..++..|.+.|++|...|..+|.=+..-...+.... ..+-++.+.+...=-.+|.+|.+|...+..+...
T Consensus 14 eqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~----------~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~ 83 (88)
T PF14389_consen 14 EQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSP----------SSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQ 83 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCcc----------ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777776655443222211000 1122233333344446777777777777766543
No 311
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=49.19 E-value=1.5e+02 Score=26.19 Aligned_cols=51 Identities=22% Similarity=0.266 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHH
Q 041050 37 AEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILR 87 (408)
Q Consensus 37 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (408)
.++.+..+...+...+.......++....+.+++.....-..+.+++..+.
T Consensus 100 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 100 LQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333444444444444444444444444444
No 312
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=49.03 E-value=44 Score=30.58 Aligned_cols=9 Identities=22% Similarity=0.372 Sum_probs=3.5
Q ss_pred HHHHHHHhH
Q 041050 20 IAEIRKLLQ 28 (408)
Q Consensus 20 ~~~~~~~~~ 28 (408)
...+++.++
T Consensus 136 ~~~lk~~~~ 144 (216)
T KOG1962|consen 136 NEALKKQLE 144 (216)
T ss_pred HHHHHHhhh
Confidence 333333333
No 313
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=48.89 E-value=1.1e+02 Score=32.32 Aligned_cols=31 Identities=32% Similarity=0.556 Sum_probs=24.6
Q ss_pred chhHhhHHHHHhHHHHHHHHhhhHHHHHHHH
Q 041050 57 CRDAEMSKLHKTLEDETLQKRKLEEEIVILR 87 (408)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (408)
....++..|.++|+++....+.|++.++.+.
T Consensus 478 ~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 478 ARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888877666
No 314
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=48.81 E-value=4.2e+02 Score=29.49 Aligned_cols=174 Identities=10% Similarity=0.064 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHH
Q 041050 194 EDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALL 272 (408)
Q Consensus 194 ~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~ 272 (408)
.+-.-|..|+..+.-...+ +.........|-+-.++.....+.+..+...++..|.-|| .....-.... .+.++.++
T Consensus 265 ~~WK~R~Eale~l~~~l~e-~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~-~~v~p~ll 342 (815)
T KOG1820|consen 265 KKWKDRKEALEELVAILEE-AKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA-KNVFPSLL 342 (815)
T ss_pred cchHHHHHHHHHHHHHHhc-cccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH-HhhcchHH
Confidence 4556677777777666555 3311112222333344455445556677888888888888 3333322222 35677788
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHH
Q 041050 273 GMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHL 352 (408)
Q Consensus 273 ~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~L 352 (408)
.-+....+.++..+..++-..+. .+ .-....+.+...++++++.++..+...+...
T Consensus 343 d~lkekk~~l~d~l~~~~d~~~n-----------------s~-------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~ 398 (815)
T KOG1820|consen 343 DRLKEKKSELRDALLKALDAILN-----------------ST-------PLSKMSEAILEALKGKNPQIKGECLLLLDRK 398 (815)
T ss_pred HHhhhccHHHHHHHHHHHHHHHh-----------------cc-------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence 88877766666544444433331 00 0123566777888888998888877666665
Q ss_pred ccCchh--HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 041050 353 AQHEVN--AREMISGGALWELVRISRDCSREDIRSLAHRTLSSS 394 (408)
Q Consensus 353 a~~~~~--~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~ 394 (408)
...... ...-.-.+.++.++.... ....++|.+|..++...
T Consensus 399 ~~~~~~~~~~~~t~~~l~p~~~~~~~-D~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 399 LRKLGPKTVEKETVKTLVPHLIKHIN-DTDKDVRKAALEAVAAV 441 (815)
T ss_pred HhhcCCcCcchhhHHHHhHHHhhhcc-CCcHHHHHHHHHHHHHH
Confidence 544221 111112334444444444 34556777777665443
No 315
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.27 E-value=4.1e+02 Score=29.21 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=45.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh
Q 041050 144 KILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE 214 (408)
Q Consensus 144 ~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~ 214 (408)
.+=.++++.++-+...|++++.++.. .+..-.. ++..|-.++. ++...+|..|..+|..+|+-+|
T Consensus 249 fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p-----avs~Lq~fls-sp~~~lRfaAvRtLnkvAm~~P 314 (865)
T KOG1078|consen 249 FLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP-----AVSVLQLFLS-SPKVALRFAAVRTLNKVAMKHP 314 (865)
T ss_pred HHHHHHhchhHHHHHHHHHHHhhccccCHhhcch-----HHHHHHHHhc-CcHHHHHHHHHHHHHHHHHhCC
Confidence 33356667788888899999988866 3221111 5666666676 4677889999999999988643
No 316
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=48.10 E-value=2.3e+02 Score=26.55 Aligned_cols=111 Identities=17% Similarity=0.206 Sum_probs=62.4
Q ss_pred HHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCC-CHHHHHHHHHHHHHhccC
Q 041050 135 KLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFE-DETIRRVAAGAIANLAMN 212 (408)
Q Consensus 135 ~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~-~~~v~~~A~~aL~nLa~~ 212 (408)
+.-+...+|+++++++.++..+-.. ++-... +-...-..+-.|-++.|..++.+.. +.=+|..|..+|..++..
T Consensus 68 q~re~~A~~~li~l~~~~~~~~~~l----~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~ 143 (249)
T PF06685_consen 68 QFREERALPPLIRLFSQDDDFLEDL----FGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHE 143 (249)
T ss_pred HHhhhhhHHHHHHHHcCCcchHHHH----HcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHc
Confidence 3444456899999998655422111 111000 0111122334556899999987542 456788899999999998
Q ss_pred ChhhHHHHHhcCcHHHHHHH-hhcCCCHHHHHHHHHHHHHH
Q 041050 213 AEANQELIMAQGGISLLSTT-AADAEDPQTLRMVAGAIANL 252 (408)
Q Consensus 213 ~~~~~~~i~~~g~i~~Lv~l-L~~~~~~~v~~~a~~aL~nL 252 (408)
++..|+.+++. +..++.. +.+ .+..+.-..+..+++|
T Consensus 144 ~~~~Re~vi~~--f~~ll~~~l~~-~~~~~~~~Lv~~~~dL 181 (249)
T PF06685_consen 144 GPISREEVIQY--FRELLNYFLER-NPSFLWGSLVADICDL 181 (249)
T ss_pred CCCCHHHHHHH--HHHHHHHHhcc-CchHHHHHHHHHHHhc
Confidence 78888888764 4444444 422 3323333333444444
No 317
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=47.80 E-value=1.3e+02 Score=32.66 Aligned_cols=122 Identities=16% Similarity=0.249 Sum_probs=56.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhccccc-------chhHhhHH-HHHhHHHHHHHHhhhHHHHHHHHhhhh
Q 041050 20 IAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGS-------CRDAEMSK-LHKTLEDETLQKRKLEEEIVILRSQLL 91 (408)
Q Consensus 20 ~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~ 91 (408)
+..+-+.|.+|...+..+|.++..-++.--......+ .-..|..+ .+.+-+++..+-..+..|+..-..+..
T Consensus 490 l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~ 569 (697)
T PF09726_consen 490 LQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIR 569 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888888777665211000000 00113333 222323222222233333333333322
Q ss_pred hhhHHHHHHHhh-----hhcccccccccccc-cchhhhhhcCCCCchHHHHHHhcC
Q 041050 92 QLTFEADQMQKC-----LERGEFGNTFTGLD-KHSQFRDSGNGQKAPITKLFEQVG 141 (408)
Q Consensus 92 ~~~~~~~~~r~~-----~~~~~~~~~~~~~~-~~~~~l~~ls~~~~~~~~l~~~~~ 141 (408)
.+..+....|+- -+.+.+..++.-++ +..++.++|+++..-..++|..-|
T Consensus 570 ~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg 625 (697)
T PF09726_consen 570 ELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALG 625 (697)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 222222222221 11222333333222 567788889988877777777643
No 318
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=47.69 E-value=1.3e+02 Score=28.58 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=28.6
Q ss_pred hHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhh
Q 041050 59 DAEMSKLHKTLEDETLQKRKLEEEIVILRSQLL 91 (408)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 91 (408)
..-+++++.+|-.+...|+.+|.++..|.-...
T Consensus 161 ~sk~e~L~ekynkeveerkrle~e~k~lq~k~~ 193 (307)
T PF10481_consen 161 DSKYEELQEKYNKEVEERKRLEAEVKALQAKKA 193 (307)
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHhcccC
Confidence 367889999999999999999999998876543
No 319
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=47.50 E-value=2.4e+02 Score=28.44 Aligned_cols=78 Identities=13% Similarity=0.060 Sum_probs=48.4
Q ss_pred HHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Q 041050 133 ITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAM 211 (408)
Q Consensus 133 ~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 211 (408)
.+..+...-+..|+.+++|+|+.-|.....+|.++-. ....|..|... ....+...+..+.+.......+.+++.+..
T Consensus 126 ~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~-i~~~~~~fi~e~~~~~gI~elLeil~sii~ 204 (409)
T PF01603_consen 126 AKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKS-INNIFYRFIYETERHNGIAELLEILGSIIN 204 (409)
T ss_dssp CTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHH-HHHHHHHHHHTTS--STHHHHHHHHHHHHT
T ss_pred HHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHhcCcccccCHHHHHHHHHHHHh
Confidence 4445666668899999999999999999999998766 56666655443 334444555433333333335555555544
No 320
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=47.09 E-value=1.9e+02 Score=27.46 Aligned_cols=69 Identities=22% Similarity=0.311 Sum_probs=45.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCC-chhH-HHHHHhCCHH----HHHHHHc-------CCCCHHHHHHHHHHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAE-EANQ-EKIVEAGGLS----SLLMLLR-------SFEDETIRRVAAGAIAN 208 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~-~~~~-~~i~~~g~i~----~L~~lL~-------~~~~~~v~~~A~~aL~n 208 (408)
+|.++.++++.++.++..++.+|..+... +... ..+...|-.+ .|...|. ..+...+...|.-+|..
T Consensus 121 iP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~ 200 (282)
T PF10521_consen 121 IPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLS 200 (282)
T ss_pred HhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHH
Confidence 89999999999999999999999998762 2222 2344454333 3333333 12345677777777777
Q ss_pred hc
Q 041050 209 LA 210 (408)
Q Consensus 209 La 210 (408)
|+
T Consensus 201 L~ 202 (282)
T PF10521_consen 201 LL 202 (282)
T ss_pred HH
Confidence 73
No 321
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=47.05 E-value=95 Score=32.19 Aligned_cols=76 Identities=24% Similarity=0.248 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhhHHHHHHHhhhh
Q 041050 30 EIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLTFEADQMQKCLE 105 (408)
Q Consensus 30 e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~ 105 (408)
|-.-+.-+++++..|-.++.........+..|...++++|....+.|+++++++..++.++..+.-|=+-.|++-+
T Consensus 411 E~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE 486 (518)
T PF10212_consen 411 EQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYE 486 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4444566777888887777666666667889999999999999999999999999999998877766555555443
No 322
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=46.54 E-value=3.4e+02 Score=27.83 Aligned_cols=91 Identities=16% Similarity=0.146 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcC------CCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccC
Q 041050 240 QTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRC------GHPDVLSQVARGIANFAKCESRAATQVRFIRCTATG 313 (408)
Q Consensus 240 ~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~------~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~ 313 (408)
.....+-.++.||++....+..+ ..|..+|.. ++..+.+=|...+..+.. +
T Consensus 230 ~l~~~~w~~m~nL~~S~~g~~~i------~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~-----------------~ 286 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLGHSAI------RTLCDILRSPDPQNKRDINVLRGAVFFLRMLLW-----------------G 286 (464)
T ss_pred ccchhHHHHHHHHHcCccHHHHH------HHHHHHHcccCccccccHHHHhhHHHHHHHHHh-----------------c
Confidence 45556667777887665554444 336666632 233444444444554443 2
Q ss_pred Chh-hHHHHHhc--CcHHHHHHhccCCCHHHHHHHHHHHHHHc
Q 041050 314 VKS-GRSLLIED--GALPWIVQNANNEAAPIRRHIELALCHLA 353 (408)
Q Consensus 314 ~~~-~~~~i~~~--g~l~~Lv~lL~~~~~~v~~~a~~aL~~La 353 (408)
+.. ....+--. -+++.+...++.+++.+-.++...+.++-
T Consensus 287 ~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 287 SGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred cccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 211 11111111 26667777777666666666666665555
No 323
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=46.53 E-value=2.2e+02 Score=27.01 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=49.2
Q ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhH-HHHHhcCcHHHH----HHHhh-------cCCCHHHHHHHHHHH
Q 041050 182 GLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQ-ELIMAQGGISLL----STTAA-------DAEDPQTLRMVAGAI 249 (408)
Q Consensus 182 ~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~-~~i~~~g~i~~L----v~lL~-------~~~~~~v~~~a~~aL 249 (408)
.+|+++.++++ .++.++..++.+|..+..+.+... ..+...|-.+.+ ..++. ..++..+...+..++
T Consensus 120 iiP~iL~llDD-~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDD-YSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcC-CCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 48999999994 588999999999999987633333 235666655543 33332 134456788888888
Q ss_pred HHHh
Q 041050 250 ANLC 253 (408)
Q Consensus 250 ~nL~ 253 (408)
..|+
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 8885
No 324
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=46.36 E-value=83 Score=30.77 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHhC--CHHHHHHHHcCC--CCHHHHHHHHHHHHHhccCChhhHH
Q 041050 157 RIHAVKVVANLAAEEANQEKIVEAG--GLSSLLMLLRSF--EDETIRRVAAGAIANLAMNAEANQE 218 (408)
Q Consensus 157 ~~~A~~aL~nLa~~~~~~~~i~~~g--~i~~L~~lL~~~--~~~~v~~~A~~aL~nLa~~~~~~~~ 218 (408)
|..|+.++..+..++....+++..+ .+..|+.++..+ -+..++..|+.+|..|+.+.....+
T Consensus 239 RllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 239 RLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHH
Confidence 3344444444444778889999888 799999999754 3578999999999999998443444
No 325
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=45.05 E-value=71 Score=37.06 Aligned_cols=144 Identities=19% Similarity=0.135 Sum_probs=85.2
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHh--CCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH
Q 041050 141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEA--GGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE 218 (408)
Q Consensus 141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~--g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~ 218 (408)
.+|.|-.-|.+++...|..|+..++.+...+..+.. +. .-....+.-+. +.+.++|..++....++-.++|....
T Consensus 260 vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~--~~~~~~~~~fl~r~~-D~~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 260 VIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS--ETYDDLWSAFLGRFN-DISVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc--ccchHHHHHHHHHhc-cCChhhhhhHHHHhHHHHhcCchhhh
Confidence 467777778899999999999999998775544432 21 11233344444 35677888777777665554354443
Q ss_pred HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
.. ++-..+.. ...|+.++....-+ ...|.-......+... .+..+...++.....|++.|+..|+.+-.
T Consensus 337 ~~----~~~~~l~~--~~~D~~~rir~~v~-i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 337 AS----TILLALRE--RDLDEDVRVRTQVV-IVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred HH----HHHHHHHh--hcCChhhhheeeEE-EEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 33 11112222 33455554322111 1112111222233333 66777778889999999999999998875
No 326
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=44.97 E-value=1.6e+02 Score=23.41 Aligned_cols=62 Identities=21% Similarity=0.265 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc---cccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhh
Q 041050 31 IHMRKTAEEELNKLKSRLGQYTE---SGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQ 92 (408)
Q Consensus 31 ~~~~~~~~~e~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 92 (408)
....+.+..+-+.+.+++.+... +.+.+..+..++++.+.....+...+++++..+...+|-
T Consensus 42 ~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iPN 106 (108)
T PF02403_consen 42 QQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSIPN 106 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS--
T ss_pred HHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33335555555555555554433 344566677777777777777777777777777666553
No 327
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=44.86 E-value=2.8e+02 Score=26.25 Aligned_cols=123 Identities=11% Similarity=0.111 Sum_probs=72.8
Q ss_pred HHHHHHhhcCCC----HHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCC---CCHHHHHHHHHHHHHhccCCh
Q 041050 142 LHKILSLLESED----ANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSF---EDETIRRVAAGAIANLAMNAE 214 (408)
Q Consensus 142 v~~Ll~lL~s~~----~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~---~~~~v~~~A~~aL~nLa~~~~ 214 (408)
+|.++.-+..++ ......++..|+.++... ..+.+..++..+... +..+....++..|+.-.. |
T Consensus 113 LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~-------~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P 183 (262)
T PF14225_consen 113 LPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ-------GLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--P 183 (262)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHHHHHHhC-------CCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--c
Confidence 677777777655 234456667777776311 133566666666433 234455555555554322 1
Q ss_pred hhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCH
Q 041050 215 ANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHP 280 (408)
Q Consensus 215 ~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~ 280 (408)
+. +...+..|+++|.+ ..+-++..+..+|..+-...+.+.- ...+.+.+|++++.++..
T Consensus 184 ~~-----~~~~l~~Ll~lL~n-~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~~~ 242 (262)
T PF14225_consen 184 DH-----EFQILTFLLGLLEN-GPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTDLW 242 (262)
T ss_pred hh-----HHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCccH
Confidence 11 11235668888844 5568999999999988733333322 444578899999987743
No 328
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=44.66 E-value=1.1e+02 Score=26.57 Aligned_cols=12 Identities=25% Similarity=0.105 Sum_probs=4.8
Q ss_pred HHHHHHHHhHHH
Q 041050 19 DIAEIRKLLQNE 30 (408)
Q Consensus 19 ~~~~~~~~~~~e 30 (408)
=.+.++|.-+++
T Consensus 51 WNs~VRkqY~~~ 62 (161)
T TIGR02894 51 WNAYVRKQYEEA 62 (161)
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 329
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.65 E-value=2.9e+02 Score=26.86 Aligned_cols=140 Identities=15% Similarity=0.216 Sum_probs=84.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
+...+..|.+.+=.....++..+.-|+. .++........ .|..++.-+++ ....|-+.|+.+++.+....... +
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslKN-lRS~VsraA~~t~~difs~ln~~---i 164 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLKN-LRSAVSRAACMTLADIFSSLNNS---I 164 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 4455566667777777777777777765 45444443333 35556666663 45678888988888886652222 2
Q ss_pred HhcCcHHHHHHHh-hcC--CCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050 221 MAQGGISLLSTTA-ADA--EDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFA 294 (408)
Q Consensus 221 ~~~g~i~~Lv~lL-~~~--~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~ 294 (408)
.+ -...++..| .++ +..=++..|-.+|-.+..+...+.. ++.|...+.+.++.++..++.+..++.
T Consensus 165 ~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~------L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 165 DQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKL------LRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHH------HHHHHHHHhhhchhhhhhhhccccccc
Confidence 22 233333333 222 2234677777888777755444333 334666678888888888877776655
No 330
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=44.02 E-value=1.4e+02 Score=23.78 Aligned_cols=62 Identities=29% Similarity=0.335 Sum_probs=42.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhh
Q 041050 26 LLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQL 93 (408)
Q Consensus 26 ~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 93 (408)
-+..|..++..++.+...+.+-++++..+ =|.+..++..++...+..++.-...|..++.+-
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTas------LFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~ 63 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTAS------LFEEANKMVADARRERAALEEKNEQLEKQLKEK 63 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888877777777665533 245667777777777777777777776666544
No 331
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=43.20 E-value=1.3e+02 Score=34.25 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=30.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHH
Q 041050 18 EDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDET 73 (408)
Q Consensus 18 ~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (408)
+..+++..-.+...+++..|+.+-.+.+..+.++.....-+.+++++..++..+..
T Consensus 377 e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e 432 (1293)
T KOG0996|consen 377 ERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELE 432 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33444454555556666666666666666665555555555555555554444433
No 332
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.11 E-value=1.1e+02 Score=32.11 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=6.5
Q ss_pred hhhHHHHHHHHhhhhh
Q 041050 77 RKLEEEIVILRSQLLQ 92 (408)
Q Consensus 77 ~~~~~~~~~l~~~l~~ 92 (408)
..+.++++.+++.+..
T Consensus 342 ~~l~r~l~~i~~~~d~ 357 (581)
T KOG0995|consen 342 NKLKRELNKIQSELDR 357 (581)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 333
>PF15573 Imm27: Immunity protein 27
Probab=43.04 E-value=99 Score=28.40 Aligned_cols=86 Identities=21% Similarity=0.335 Sum_probs=61.6
Q ss_pred HHHHHHhcC--H-HHHHHhhc-CCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041050 133 ITKLFEQVG--L-HKILSLLE-SEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIAN 208 (408)
Q Consensus 133 ~~~l~~~~~--v-~~Ll~lL~-s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~n 208 (408)
+.+++..|- + +.|+++++ ..|+.+...+.++.+.+|.+++.+. .+-+ ..|.+.....+-..|.+|+..
T Consensus 36 i~El~K~GDFsvK~LLiqLMN~TkDE~vLNLCiRlFcSV~THdDL~~----~nNl----~FLs~asE~~v~TF~s~A~~t 107 (259)
T PF15573_consen 36 IIELLKKGDFSVKNLLIQLMNQTKDEAVLNLCIRLFCSVATHDDLRD----SNNL----RFLSSASEFGVFTFASGAITT 107 (259)
T ss_pred HHHHHHhCCchhhHHHHHHHhcchhHHHHHHHHHHHHhhcchHhhhc----ccce----ehHhhhhHHHHHHHHHHhhcc
Confidence 356666664 3 56679998 5677888889999999998766553 2222 233333456788889999999
Q ss_pred hccCChhhHHHHHhcCcHHHHHHHhhcCCC
Q 041050 209 LAMNAEANQELIMAQGGISLLSTTAADAED 238 (408)
Q Consensus 209 La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 238 (408)
|+.. +||.|+.++.+=++
T Consensus 108 lSye------------VIPYLLaLleeWed 125 (259)
T PF15573_consen 108 LSYE------------VIPYLLALLEEWED 125 (259)
T ss_pred chhh------------HHHHHHHHHHHHhc
Confidence 9998 89999999864333
No 334
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=42.90 E-value=1e+02 Score=25.07 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhhH
Q 041050 35 KTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLTF 95 (408)
Q Consensus 35 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 95 (408)
+-+|.|+.++|..-+ ++-..|+++-++.|..|.+-++++...+...+..+++...
T Consensus 10 kdLeselsk~Ktsq~------d~~~~eLEkYkqly~eElk~r~SLs~kL~ktnerLaevst 64 (111)
T PF12001_consen 10 KDLESELSKMKTSQE------DSNKTELEKYKQLYLEELKLRKSLSNKLNKTNERLAEVST 64 (111)
T ss_pred HHHHHHHHHhHhHhh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567777777774422 1236789999999999999999999999999999988853
No 335
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=42.43 E-value=1.9e+02 Score=28.20 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=26.2
Q ss_pred HHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 041050 45 KSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLT 94 (408)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 94 (408)
.+.+.++..+.+.+..|+.++++.............++.+.+...+.++.
T Consensus 63 ~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~ 112 (314)
T PF04111_consen 63 LQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQ 112 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334445555555555555555555556666666665555544
No 336
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=41.58 E-value=1.9e+02 Score=25.43 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHh--hhhcccccchhHhhHHHHHhHHHHH
Q 041050 36 TAEEELNKLKSRL--GQYTESGSCRDAEMSKLHKTLEDET 73 (408)
Q Consensus 36 ~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (408)
-.|.|+..|.+-| ++.+.+.+++.+|+....++|.+..
T Consensus 104 ~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 104 YVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555543 2445555555555555555555433
No 337
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=41.52 E-value=2.9e+02 Score=26.92 Aligned_cols=92 Identities=21% Similarity=0.225 Sum_probs=59.5
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchh-------------------HhhHHHHHhHHHHHHH
Q 041050 15 SAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRD-------------------AEMSKLHKTLEDETLQ 75 (408)
Q Consensus 15 ~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 75 (408)
.+.+.-..|-.++.+-..+.+.+++|+..++..+.++++++..+. .|-+.+-..|+....+
T Consensus 62 ~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q 141 (319)
T PF09789_consen 62 PPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQ 141 (319)
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHH
Confidence 334466677777888888888888888888888876666644222 3444455566666666
Q ss_pred HhhhHHHHHHHHhhhhhhhHHHHHHHhhhhc
Q 041050 76 KRKLEEEIVILRSQLLQLTFEADQMQKCLER 106 (408)
Q Consensus 76 ~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~ 106 (408)
-.++++++..+.--..++..+-+-.|.+..|
T Consensus 142 ~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~R 172 (319)
T PF09789_consen 142 IEQLERDLQSLLDEKEELVTERDAYKCKAHR 172 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777666666665554445554443
No 338
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=41.00 E-value=3.2e+02 Score=25.84 Aligned_cols=134 Identities=13% Similarity=0.032 Sum_probs=78.2
Q ss_pred HHHHHHhCCHHHHHHHHcCCC---CHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCC---CHHHHHHHHH
Q 041050 174 QEKIVEAGGLSSLLMLLRSFE---DETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAE---DPQTLRMVAG 247 (408)
Q Consensus 174 ~~~i~~~g~i~~L~~lL~~~~---~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~~v~~~a~~ 247 (408)
|-.+.=.+.+|.++.-+.+.. .......++..|+.+|.. . ....+..++....+.. ..+....++.
T Consensus 104 rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~-~-------~~~~La~il~~ya~~~fr~~~dfl~~v~~ 175 (262)
T PF14225_consen 104 RLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEA-Q-------GLPNLARILSSYAKGRFRDKDDFLSQVVS 175 (262)
T ss_pred cHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHh-C-------CCccHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 333333445778888887543 113444567888888854 1 1223444444433222 2345666666
Q ss_pred HHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcH
Q 041050 248 AIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGAL 327 (408)
Q Consensus 248 aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l 327 (408)
.|..-.. |+. +...+..|+++|..+-+.++..++..|..+-. +.+.+.- ...+++
T Consensus 176 ~l~~~f~-P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~------------------~~d~~~~-~~~dli 230 (262)
T PF14225_consen 176 YLREAFF-PDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLP------------------HVDMRSP-HGADLI 230 (262)
T ss_pred HHHHHhC-chh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhc------------------cccCCCC-cchHHH
Confidence 6654331 111 22345668999988889999999999999874 1111111 333578
Q ss_pred HHHHHhccCCCHH
Q 041050 328 PWIVQNANNEAAP 340 (408)
Q Consensus 328 ~~Lv~lL~~~~~~ 340 (408)
.++.++++++...
T Consensus 231 spllrlL~t~~~~ 243 (262)
T PF14225_consen 231 SPLLRLLQTDLWM 243 (262)
T ss_pred HHHHHHhCCccHH
Confidence 8999999877443
No 339
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=40.94 E-value=1.4e+02 Score=25.20 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhH
Q 041050 17 AEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTL 69 (408)
Q Consensus 17 ~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (408)
......++.-.++=....-..+.++..+|.++.....+...+..++.+..+++
T Consensus 33 ~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~ 85 (150)
T PF07200_consen 33 QQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQ 85 (150)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444433333444444455556566555533333333333444333333
No 340
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=40.83 E-value=5.6e+02 Score=28.62 Aligned_cols=62 Identities=13% Similarity=0.129 Sum_probs=44.4
Q ss_pred HHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccC-----C-hhhHHHHHhcCcHHHHHHHhhc
Q 041050 174 QEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMN-----A-EANQELIMAQGGISLLSTTAAD 235 (408)
Q Consensus 174 ~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-----~-~~~~~~i~~~g~i~~Lv~lL~~ 235 (408)
.+.+-+...+++++.++..+.++.++..|...|+.+... . +.....+.....+..|+..+..
T Consensus 183 iq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~ 250 (838)
T KOG2073|consen 183 IQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLE 250 (838)
T ss_pred HHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHcc
Confidence 344556678999999998777788999888888877665 1 2356666677777776655433
No 341
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=40.65 E-value=1.6e+02 Score=23.34 Aligned_cols=65 Identities=14% Similarity=0.090 Sum_probs=49.1
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHH
Q 041050 226 ISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIA 291 (408)
Q Consensus 226 i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~ 291 (408)
+..|++-. +.+++.....+...+..+...+.....+.+-|+...|.++-...++..+..+-..+-
T Consensus 32 l~~LleWF-nf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 32 LKQLLEWF-NFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred HHHHHHHh-CCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 44455554 555556888899999999999999999999999998777766677777666555543
No 342
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=40.06 E-value=1.7e+02 Score=30.03 Aligned_cols=78 Identities=19% Similarity=0.285 Sum_probs=61.7
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhh
Q 041050 15 SAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQ 92 (408)
Q Consensus 15 ~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 92 (408)
++..++..+.|..||=....+.+..|+.+-|..|.....+.+.+.-.+...++.+.-+.+.|.++|-+.+.+.++.-.
T Consensus 25 g~e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~ 102 (604)
T KOG3564|consen 25 GNEDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQL 102 (604)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 458899999999999888888888888888887765555555566677788899999999999988888888777543
No 343
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=39.76 E-value=5.2e+02 Score=28.00 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=28.0
Q ss_pred HHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHc
Q 041050 135 KLFEQVGLHKILSLLESEDANVRIHAVKVVANLA 168 (408)
Q Consensus 135 ~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa 168 (408)
+....+-+..+++-+..++++++..|+..|....
T Consensus 43 D~~lk~dLellVervqdpd~~Lq~~aLe~lr~~i 76 (878)
T KOG2005|consen 43 DLQLKGDLELLVERVQDPDPDLQKAALESLREEI 76 (878)
T ss_pred HHHhhhhHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 4445566889999999999999999999988653
No 344
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=39.55 E-value=1.5e+02 Score=28.74 Aligned_cols=76 Identities=20% Similarity=0.290 Sum_probs=51.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhh
Q 041050 18 EDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQL 93 (408)
Q Consensus 18 ~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 93 (408)
..++.|-..|..-......-++||..|..++.+++.....+..|.++++..|.....-+.+|-.++..++....+-
T Consensus 213 ~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~ 288 (306)
T PF04849_consen 213 QQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAEC 288 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444466777888888887777777777777778888887777666667777777777766554
No 345
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=39.51 E-value=2e+02 Score=27.36 Aligned_cols=75 Identities=23% Similarity=0.323 Sum_probs=47.1
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHH-HHH-HHHhhhHHHHHHHHhhhhhh
Q 041050 17 AEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLE-DET-LQKRKLEEEIVILRSQLLQL 93 (408)
Q Consensus 17 ~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~l~~~l~~~ 93 (408)
+=-|.+|+..|.+-..+-+..+.||..||.||.--+.+ =+.+|.+.+.-+|- .|+ +.=++|-..|.-++++|.+-
T Consensus 67 EV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrED--WIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ek 143 (305)
T PF15290_consen 67 EVCIRHLKAKLKESENRLHDRETEIDELKSQLARMRED--WIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEK 143 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 44467888888887778888999999999998733322 34566665444443 122 22234555566666665543
No 346
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=39.42 E-value=2.8e+02 Score=27.01 Aligned_cols=77 Identities=23% Similarity=0.264 Sum_probs=39.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhh-----------cccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHH
Q 041050 19 DIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQY-----------TESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILR 87 (408)
Q Consensus 19 ~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (408)
....+.+++..=..++..++.|+..++....+. ..+......++...++.+.....+...+...+..+.
T Consensus 171 ~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~ 250 (325)
T PF08317_consen 171 QLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELE 250 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666777777777777764421 111112233333344444444444455555555555
Q ss_pred hhhhhhhH
Q 041050 88 SQLLQLTF 95 (408)
Q Consensus 88 ~~l~~~~~ 95 (408)
.+..+...
T Consensus 251 ~~k~~l~~ 258 (325)
T PF08317_consen 251 EQKQELLA 258 (325)
T ss_pred HHHHHHHH
Confidence 55444443
No 347
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=39.38 E-value=3e+02 Score=26.75 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=4.9
Q ss_pred hhHHHHHHHHhh
Q 041050 78 KLEEEIVILRSQ 89 (408)
Q Consensus 78 ~~~~~~~~l~~~ 89 (408)
.+.++...++.+
T Consensus 110 ~~~~e~~sl~~q 121 (314)
T PF04111_consen 110 EFQEERDSLKNQ 121 (314)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444444
No 348
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.29 E-value=3.7e+02 Score=30.46 Aligned_cols=55 Identities=13% Similarity=0.167 Sum_probs=29.7
Q ss_pred CchHHHHHHhcCHHHHHHhhc-CCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHH
Q 041050 130 KAPITKLFEQVGLHKILSLLE-SEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLS 184 (408)
Q Consensus 130 ~~~~~~l~~~~~v~~Ll~lL~-s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~ 184 (408)
.+|...-.-.|-|..|+.+-. +....+...|-.-|.|... ++....++.+.|.+.
T Consensus 513 ~~nfdrs~V~G~Va~Li~vkd~~~~tAle~~aGgrLynvVv~te~tgkqLLq~g~l~ 569 (1174)
T KOG0933|consen 513 EPNFDRSKVKGLVAKLIKVKDRSYATALETTAGGRLYNVVVDTEDTGKQLLQRGNLR 569 (1174)
T ss_pred CccchHHHHHHHHHHHheeCcchHHHHHHHHhcCcceeEEeechHHHHHHhhccccc
Confidence 344443334455777777655 3334455556666667665 444455555555444
No 349
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=39.19 E-value=1.2e+02 Score=31.65 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=43.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhh
Q 041050 23 IRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQL 93 (408)
Q Consensus 23 ~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 93 (408)
.++++++...-+..--.|+..+...-.+++.+++.++..++++++.+.++...=.+++-++.....++.++
T Consensus 77 ~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 77 IGRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 34556666666666666666665554456666667777777777777666555555666665555554444
No 350
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=39.17 E-value=2.7e+02 Score=24.49 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=10.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 041050 21 AEIRKLLQNEIHMRKTAEEELNKLKSR 47 (408)
Q Consensus 21 ~~~~~~~~~e~~~~~~~~~e~~~~~~~ 47 (408)
..+.+.++++-.+-...+.++..++..
T Consensus 91 ~~l~~el~~l~~~~~~~~~~l~~~~~~ 117 (191)
T PF04156_consen 91 QQLQEELDQLQERIQELESELEKLKED 117 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444433334444444444333
No 351
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.06 E-value=1.4e+02 Score=31.76 Aligned_cols=95 Identities=17% Similarity=0.251 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh-cCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhc
Q 041050 198 IRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAA-DAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVR 276 (408)
Q Consensus 198 v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~ 276 (408)
.+..-+.++-....+ .+.-+.+...||...+..+-. ..+.+.+.+...+.++|++.++.....+...|++..+..+.+
T Consensus 266 l~~~~a~~~~~~~K~-~~lsd~l~~dg~~q~~~~~~e~~rd~~~v~~~l~rvlanms~~~~~~~s~~~S~W~sl~s~~~t 344 (697)
T KOG2029|consen 266 LGDLNANALLETPKT-FELSDGLWDDGGLQHLAVLQEFDRDGQVVMRALMRVLANMSEDEKLALSDSRSGWVSLVSEMST 344 (697)
T ss_pred chhHHHHHHHhcccc-HHHHHHHHhcchHHHHHHHHHHhcCChhhhHHHHHHHHhhhcccccchhhhhhhhHHHHHHHhc
Confidence 333334444455555 555567778888776554422 345667888999999999988888888888999997777888
Q ss_pred CCCHHHHHH--HHHHHHHhh
Q 041050 277 CGHPDVLSQ--VARGIANFA 294 (408)
Q Consensus 277 ~~~~~v~~~--a~~aL~nL~ 294 (408)
++| .++.. .+..++|+-
T Consensus 345 ~~d-~l~~~~~sak~man~~ 363 (697)
T KOG2029|consen 345 TPD-SLRERALSAKLMANLD 363 (697)
T ss_pred Cch-hHHHHHHHHHHhccCc
Confidence 876 55543 446666654
No 352
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=39.03 E-value=1.9e+02 Score=25.89 Aligned_cols=58 Identities=26% Similarity=0.282 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHH-HHHhhhHHHHHHHHhhhhhh
Q 041050 36 TAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDET-LQKRKLEEEIVILRSQLLQL 93 (408)
Q Consensus 36 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~ 93 (408)
.++.++..++....++...........+.+.|+.+... ...+...+++.+++.+..++
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql 182 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQL 182 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333333333344444433322 22334555666666554433
No 353
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=39.00 E-value=20 Score=20.93 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHc
Q 041050 156 VRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLR 191 (408)
Q Consensus 156 v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~ 191 (408)
+|..|+++|+++.. ..+++.|+..|+
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 57889999988765 335777777764
No 354
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=38.78 E-value=3.4e+02 Score=29.16 Aligned_cols=34 Identities=18% Similarity=0.417 Sum_probs=27.7
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q 041050 17 AEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQ 50 (408)
Q Consensus 17 ~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~ 50 (408)
..++..+++-.++...+-..+|..|.+++.++..
T Consensus 35 seev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~ 68 (617)
T PF15070_consen 35 SEEVRTLKEEKEHDISRVQELERSLSELKNQMAE 68 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4566778888888888889999999999998763
No 355
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=38.78 E-value=63 Score=27.22 Aligned_cols=70 Identities=14% Similarity=0.215 Sum_probs=52.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHH---HHHHHHHHHHHhcc
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDET---IRRVAAGAIANLAM 211 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~---v~~~A~~aL~nLa~ 211 (408)
+..|-.-|.+.++.++..|+.+|-.+.. ++.....+.....+..|..++.+..... |+..+...|...+.
T Consensus 44 ~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 44 ARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 5566677889999999999999998887 3566777777767888999887554444 78877777655443
No 356
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=38.29 E-value=1.2e+02 Score=32.14 Aligned_cols=76 Identities=22% Similarity=0.325 Sum_probs=55.1
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHH---HHHHHHhhhHHHHHHHHhhhhh
Q 041050 17 AEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLE---DETLQKRKLEEEIVILRSQLLQ 92 (408)
Q Consensus 17 ~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~ 92 (408)
.+.|..|-..+++|...++..+....++.+.+.+....+..+..|+..++..|. ++.....++++.+..+......
T Consensus 288 ~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~ 366 (569)
T PRK04778 288 QERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDE 366 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888888888888888888888888777777777888888877765 5555556666666666655543
No 357
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=38.02 E-value=3.2e+02 Score=26.45 Aligned_cols=86 Identities=23% Similarity=0.207 Sum_probs=54.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhH--HHHHhHHHHHHHHhhh--------HHHHHHHHh
Q 041050 19 DIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMS--KLHKTLEDETLQKRKL--------EEEIVILRS 88 (408)
Q Consensus 19 ~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~l~~ 88 (408)
+.-.|+.-++.+..+.+.+++++..++..-...+...+ ..+|+. .+.|+++.+.+.+..+ |...+.|..
T Consensus 35 en~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aE-qEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~r 113 (310)
T PF09755_consen 35 ENRVLKRELETEKARCKHLQEENRALREASVRIQAKAE-QEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSR 113 (310)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666667777788999999999888654443332 234444 4888888888777766 333366666
Q ss_pred hhhhhhHHHHHHHhhhh
Q 041050 89 QLLQLTFEADQMQKCLE 105 (408)
Q Consensus 89 ~l~~~~~~~~~~r~~~~ 105 (408)
.+.++..+-...=+.+.
T Consensus 114 kl~qLr~EK~~lE~~Le 130 (310)
T PF09755_consen 114 KLNQLRQEKVELENQLE 130 (310)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67666655444433343
No 358
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=37.84 E-value=2.2e+02 Score=27.82 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHhcC--cHHHHHHHhhcCC--CHHHHHHHHHHHHHHhCCchh
Q 041050 197 TIRRVAAGAIANLAMNAEANQELIMAQG--GISLLSTTAADAE--DPQTLRMVAGAIANLCGNDKL 258 (408)
Q Consensus 197 ~v~~~A~~aL~nLa~~~~~~~~~i~~~g--~i~~Lv~lL~~~~--~~~v~~~a~~aL~nL~~~~~~ 258 (408)
.+|-.|+.++..+..+ +.....++..+ .+..|++++..+. ...++..|..+|..|+.....
T Consensus 237 ~iRllAi~~l~~~~~~-~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~ 301 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPE-SQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPR 301 (329)
T ss_pred HHHHHHHHHHHhhCCC-HHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcccc
Confidence 3455566666666666 88888998888 8888999985432 357899999999999854433
No 359
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=37.52 E-value=51 Score=27.75 Aligned_cols=63 Identities=16% Similarity=0.081 Sum_probs=47.6
Q ss_pred cHHHHHHhccCCCHHHHHHHHHHHHHHccCc--hhHHHHHhCCcHHHHHHHHhcCCHHH---HHHHHH
Q 041050 326 ALPWIVQNANNEAAPIRRHIELALCHLAQHE--VNAREMISGGALWELVRISRDCSRED---IRSLAH 388 (408)
Q Consensus 326 ~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~--~~~~~l~~~g~i~~L~~ll~~~~~~~---~~~~A~ 388 (408)
++..|.+.+.+.++.++..|...|-.+..+. .....+.+...+..|..++.+..... ++..+.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l 110 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKIL 110 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHH
Confidence 5667888899999999999999999999873 44555667778999999887654433 454444
No 360
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=37.36 E-value=2.8e+02 Score=30.40 Aligned_cols=57 Identities=9% Similarity=0.086 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHh-CCchhHHHH-HhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 239 PQTLRMVAGAIANLC-GNDKLQMKL-RSEGGIRALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 239 ~~v~~~a~~aL~nL~-~~~~~~~~i-~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
..+...+..+|..++ .+++.-..+ .+.+....++.++-+++.++...|...|.....
T Consensus 495 ~~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 495 GQITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 356667888888998 555554444 567899999999999999999988888888764
No 361
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=37.19 E-value=2.3e+02 Score=23.16 Aligned_cols=126 Identities=11% Similarity=0.111 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh--------hhHH-----H
Q 041050 155 NVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE--------ANQE-----L 219 (408)
Q Consensus 155 ~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~--------~~~~-----~ 219 (408)
-++...+.++..++. .|.... ..++.+++++.+ ++........+|..+..+-. ..|. .
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp-----~~l~~l~~~~~~--~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~ 75 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWP-----DFLEDLLQLLQS--SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDA 75 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTST-----THHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhCc-----hHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHH
Confidence 355666777777765 234332 246777888874 45566666666665543310 1111 1
Q ss_pred HHhc--CcHHHHHHHhhcCCC---HHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHH
Q 041050 220 IMAQ--GGISLLSTTAADAED---PQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGI 290 (408)
Q Consensus 220 i~~~--g~i~~Lv~lL~~~~~---~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL 290 (408)
+.+. ..+..+...+....+ +.+...+..++...... -.-..+.+.+.++.+.+++..+ .++..|+.+|
T Consensus 76 l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~-~~~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 76 LRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISW-IPIELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTT-S-HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHh-CCHHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 2221 122233344433332 77888888988888763 3334555677889999988444 4466666654
No 362
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=37.09 E-value=2.8e+02 Score=27.71 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=11.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 041050 18 EDIAEIRKLLQNEIHMRKTAEEELNKLKSR 47 (408)
Q Consensus 18 ~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~ 47 (408)
++..+|+.|+|+-. .+++....||.+
T Consensus 264 aileeL~eIk~~q~----~Leesye~Lke~ 289 (455)
T KOG3850|consen 264 AILEELREIKETQA----LLEESYERLKEQ 289 (455)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 34444444444433 344444445544
No 363
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=36.87 E-value=47 Score=19.54 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHc
Q 041050 155 NVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLR 191 (408)
Q Consensus 155 ~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~ 191 (408)
.+|..|+.+|+++.. ..+++.|+..|.
T Consensus 2 ~vR~~aa~aLg~~~~----------~~a~~~L~~~l~ 28 (30)
T smart00567 2 LVRHEAAFALGQLGD----------EEAVPALIKALE 28 (30)
T ss_pred HHHHHHHHHHHHcCC----------HhHHHHHHHHhc
Confidence 478899999999744 235667777765
No 364
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=36.55 E-value=4.1e+02 Score=25.83 Aligned_cols=156 Identities=15% Similarity=0.113 Sum_probs=0.0
Q ss_pred cHHHHHHHhhcCC---CHHHHHHHHHHHHHHh-CCchhHHHHHhc-----------ccHHHHHHhhc------CCCHHHH
Q 041050 225 GISLLSTTAADAE---DPQTLRMVAGAIANLC-GNDKLQMKLRSE-----------GGIRALLGMVR------CGHPDVL 283 (408)
Q Consensus 225 ~i~~Lv~lL~~~~---~~~v~~~a~~aL~nL~-~~~~~~~~i~~~-----------g~l~~L~~lL~------~~~~~v~ 283 (408)
++..|++.+-... ..++|..|+.++...+ .|++.|..+++. ....-|+..|- ..||--.
T Consensus 35 vi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~ 114 (312)
T PF04869_consen 35 VIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRC 114 (312)
T ss_dssp HHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHH
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHH
Q ss_pred HHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhc--C--------------cHHHHHHhcc-CCCHHHHHHHH
Q 041050 284 SQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIED--G--------------ALPWIVQNAN-NEAAPIRRHIE 346 (408)
Q Consensus 284 ~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~--g--------------~l~~Lv~lL~-~~~~~v~~~a~ 346 (408)
=.|+.+|..+-. +++..+..+..- | +...|+.-+. +.++.++.--.
T Consensus 115 wfAa~il~hll~-----------------dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL 177 (312)
T PF04869_consen 115 WFAAVILMHLLR-----------------DNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYL 177 (312)
T ss_dssp HHHHHHHHHHHT-----------------T-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHH
T ss_pred HHHHHHHHHHHh-----------------cCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHH
Q ss_pred HHHHHHccC-chhHHHHH-hCCcHHHHHHHHhcCCHHH--HHHHHHHHHhccHhh
Q 041050 347 LALCHLAQH-EVNAREMI-SGGALWELVRISRDCSRED--IRSLAHRTLSSSLTF 397 (408)
Q Consensus 347 ~aL~~La~~-~~~~~~l~-~~g~i~~L~~ll~~~~~~~--~~~~A~~~L~~~~~~ 397 (408)
..|+....+ +....++. +.+.++.|+......+.++ ++.++.-+|...-.|
T Consensus 178 ~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef 232 (312)
T PF04869_consen 178 MLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEF 232 (312)
T ss_dssp HHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHh
No 365
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=36.42 E-value=2.1e+02 Score=23.64 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 041050 32 HMRKTAEEELNKLKSRL 48 (408)
Q Consensus 32 ~~~~~~~~e~~~~~~~~ 48 (408)
..++.+.+||.++-...
T Consensus 44 ~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 44 AERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 366
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=36.42 E-value=2.7e+02 Score=25.18 Aligned_cols=57 Identities=14% Similarity=0.220 Sum_probs=29.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhh
Q 041050 23 IRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKL 79 (408)
Q Consensus 23 ~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (408)
|+.-+.+-.++....+..+.........+..+...+..|+.++++.+.+..+.+.++
T Consensus 32 LKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L 88 (201)
T PF13851_consen 32 LKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSL 88 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333443333333444444566777778888877766555543
No 367
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=36.15 E-value=1.8e+02 Score=29.58 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=16.8
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhH
Q 041050 70 EDETLQKRKLEEEIVILRSQLLQLTF 95 (408)
Q Consensus 70 ~~~~~~~~~~~~~~~~l~~~l~~~~~ 95 (408)
+.+.....+.++.+.+|+.|+..++|
T Consensus 424 e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 424 EREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 34445555677777777777777754
No 368
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=35.99 E-value=2.5e+02 Score=23.18 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHH
Q 041050 27 LQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLED 71 (408)
Q Consensus 27 ~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (408)
++.-...-...|.|+..+|.++..+...-+.+..|+.++.+..+.
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~ 62 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEE 62 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445667777777777776666666667777766665543
No 369
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=35.29 E-value=2.8e+02 Score=23.46 Aligned_cols=71 Identities=10% Similarity=0.147 Sum_probs=50.4
Q ss_pred cHHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCchhHHHHHhcccHHH-HHHhhcC---CCHHHHHHHHHHHHHhhc
Q 041050 225 GISLLSTTAADAEDPQTLRMVAGAIANLC--GNDKLQMKLRSEGGIRA-LLGMVRC---GHPDVLSQVARGIANFAK 295 (408)
Q Consensus 225 ~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~-L~~lL~~---~~~~v~~~a~~aL~nL~~ 295 (408)
++..|..-|..+.+|.+...++..|-.+. .....+..+.+...+.- |+.++.. .+..|+..++..+...+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 34445554544567788878888887777 33567788888888886 8888852 345888888888888774
No 370
>PF15573 Imm27: Immunity protein 27
Probab=35.18 E-value=63 Score=29.63 Aligned_cols=75 Identities=15% Similarity=0.252 Sum_probs=50.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHh
Q 041050 227 SLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRF 306 (408)
Q Consensus 227 ~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~ 306 (408)
+.|++++....|+.++-.+.+..+.+|.+++.+. .+-+..|. ..+...+-.-|..|+..|+.
T Consensus 49 ~LLiqLMN~TkDE~vLNLCiRlFcSV~THdDL~~----~nNl~FLs---~asE~~v~TF~s~A~~tlSy----------- 110 (259)
T PF15573_consen 49 NLLIQLMNQTKDEAVLNLCIRLFCSVATHDDLRD----SNNLRFLS---SASEFGVFTFASGAITTLSY----------- 110 (259)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHhhcchHhhhc----ccceehHh---hhhHHHHHHHHHHhhccchh-----------
Confidence 4688998888899999999999999997665432 23232221 12333445556666666653
Q ss_pred hhhhccCChhhHHHHHhcCcHHHHHHhccCC
Q 041050 307 IRCTATGVKSGRSLLIEDGALPWIVQNANNE 337 (408)
Q Consensus 307 ~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~ 337 (408)
.++|.|..++..-
T Consensus 111 ------------------eVIPYLLaLleeW 123 (259)
T PF15573_consen 111 ------------------EVIPYLLALLEEW 123 (259)
T ss_pred ------------------hHHHHHHHHHHHH
Confidence 6899999998653
No 371
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=35.00 E-value=2.2e+02 Score=25.81 Aligned_cols=55 Identities=13% Similarity=0.302 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHH
Q 041050 17 AEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLED 71 (408)
Q Consensus 17 ~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (408)
.-||++|+..|.+--..-..-..||..||.++-+.......-...+..++..+++
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~ 63 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRT 63 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4478899988877666666667788888888766555555444555555544443
No 372
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=34.77 E-value=2.5e+02 Score=24.17 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=57.5
Q ss_pred hHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHH-hC-CHHHHHH-HHcCCC-CHHHHHHHHHHHH
Q 041050 132 PITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVE-AG-GLSSLLM-LLRSFE-DETIRRVAAGAIA 207 (408)
Q Consensus 132 ~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~-~g-~i~~L~~-lL~~~~-~~~v~~~A~~aL~ 207 (408)
....+++....+.++..+.+++..+-..+++++..+.. ..+..+.. .+ .++.++. ++.++. +...+..++.++.
T Consensus 65 ~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~--~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~ 142 (168)
T PF12783_consen 65 SLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLS--RFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILR 142 (168)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Confidence 56677888888888888887779999999999998874 22333322 22 2566665 666443 3567788999999
Q ss_pred HhccCChh
Q 041050 208 NLAMNAEA 215 (408)
Q Consensus 208 nLa~~~~~ 215 (408)
.++.+ |.
T Consensus 143 ~l~~~-p~ 149 (168)
T PF12783_consen 143 ELCKD-PQ 149 (168)
T ss_pred HHHhC-hh
Confidence 99998 53
No 373
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=34.73 E-value=4.7e+02 Score=26.03 Aligned_cols=131 Identities=17% Similarity=0.164 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHH-Hh-hcCCCHHHHHHHHHHHHHHhCCchh-------------HH
Q 041050 196 ETIRRVAAGAIANLAMNAEANQELIMAQGGISLLST-TA-ADAEDPQTLRMVAGAIANLCGNDKL-------------QM 260 (408)
Q Consensus 196 ~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~-lL-~~~~~~~v~~~a~~aL~nL~~~~~~-------------~~ 260 (408)
.+-|++|+..|..|+...+..-..++.. .+..++. .- ..+.+..-...|+..+..|+.-... -.
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~-~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQ-YIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 4567788899999986522222222211 1222222 11 1334566777888888888822211 12
Q ss_pred HHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHH
Q 041050 261 KLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAP 340 (408)
Q Consensus 261 ~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~ 340 (408)
.+...-.+|-|. --.+..|-++..|++.+..+.. .-....+. +++|.++.+|.+++.-
T Consensus 304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~-------------------~l~~~~l~--~~~~~l~~~L~~~~~v 361 (370)
T PF08506_consen 304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRN-------------------QLPKEQLL--QIFPLLVNHLQSSSYV 361 (370)
T ss_dssp HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGG-------------------GS-HHHHH--HHHHHHHHHTTSS-HH
T ss_pred HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHh-------------------hCCHHHHH--HHHHHHHHHhCCCCcc
Confidence 222333334333 1124567888999999999874 11122333 4899999999999999
Q ss_pred HHHHHHHHH
Q 041050 341 IRRHIELAL 349 (408)
Q Consensus 341 v~~~a~~aL 349 (408)
|+..|+.++
T Consensus 362 v~tyAA~~i 370 (370)
T PF08506_consen 362 VHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHH
T ss_pred hhhhhhhhC
Confidence 999998875
No 374
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.32 E-value=80 Score=32.53 Aligned_cols=84 Identities=15% Similarity=0.130 Sum_probs=60.0
Q ss_pred CcHHHHHHhccCCCHHHHHHHHHHHHHHccC--chhHHHHHhCCcHHHHHHHHhcC-CHHHHHHHHHHH-------Hhc-
Q 041050 325 GALPWIVQNANNEAAPIRRHIELALCHLAQH--EVNAREMISGGALWELVRISRDC-SREDIRSLAHRT-------LSS- 393 (408)
Q Consensus 325 g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~g~i~~L~~ll~~~-~~~~~~~~A~~~-------L~~- 393 (408)
.++..|.+.+.+.++.++..|+..|-.|..+ ..-...+++.+.+..++.+.... ....++..+..+ +..
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~ 117 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCGP 117 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccCC
Confidence 3566778888888889999999988888877 33345677999999999988876 344466655532 322
Q ss_pred ------cHhhHHHHHhhhhcC
Q 041050 394 ------SLTFRAEMRRLRIEF 408 (408)
Q Consensus 394 ------~~~~~~~~~~~~~~~ 408 (408)
+-+...++++.|++|
T Consensus 118 ~~~~~~~~~~y~~l~~~G~~F 138 (470)
T KOG1087|consen 118 DGYLPDYYQIYDELRRKGVEF 138 (470)
T ss_pred CCcchhHHHHHHHHHHcCCcC
Confidence 223468888888875
No 375
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=34.27 E-value=1.4e+02 Score=31.01 Aligned_cols=77 Identities=26% Similarity=0.355 Sum_probs=57.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHH---HHHHHHhhhHHHHHHHHhhhhhhh
Q 041050 18 EDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLE---DETLQKRKLEEEIVILRSQLLQLT 94 (408)
Q Consensus 18 ~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~ 94 (408)
..+-.+-.++|+|...++-.++....+..-+.+.+..+..++.|++.+++.|. ++.....+++.++.-+.+.+.+..
T Consensus 288 e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~ 367 (570)
T COG4477 288 EKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEIL 367 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777787777777777777777777777777788888888888886 666777778888877777766554
No 376
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=34.02 E-value=1.4e+02 Score=25.83 Aligned_cols=55 Identities=9% Similarity=0.174 Sum_probs=38.4
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcc---cccchhHhhHHHHHhHH
Q 041050 16 AAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTE---SGSCRDAEMSKLHKTLE 70 (408)
Q Consensus 16 ~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 70 (408)
|.+.+-..+..++.....++.++.++....+++..++. +++.++.++.+++..+.
T Consensus 11 ~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 11 NGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 34455556677777788889999999999999887776 44455555555555554
No 377
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=33.52 E-value=2.1e+02 Score=22.44 Aligned_cols=62 Identities=21% Similarity=0.157 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 041050 33 MRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLT 94 (408)
Q Consensus 33 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 94 (408)
.++...+.+..+...+..+.....-+..|+.+..++|....+..+.+.-++..|+.++....
T Consensus 11 a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~ 72 (96)
T PF08647_consen 11 AFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSS 72 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Confidence 34555555666666655555555566788888999999999999999999998888876554
No 378
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=33.32 E-value=3.1e+02 Score=25.20 Aligned_cols=7 Identities=43% Similarity=0.359 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 041050 157 RIHAVKV 163 (408)
Q Consensus 157 ~~~A~~a 163 (408)
|+.|+..
T Consensus 258 REdave~ 264 (290)
T COG4026 258 REDAVEE 264 (290)
T ss_pred hHHHHHH
Confidence 3333333
No 379
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=33.06 E-value=2.8e+02 Score=22.93 Aligned_cols=86 Identities=15% Similarity=0.108 Sum_probs=52.2
Q ss_pred HHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhc
Q 041050 246 AGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIED 324 (408)
Q Consensus 246 ~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~ 324 (408)
..=|++++ .++.....++ ..|.+-|..+++-|+..|++.|-.++.. |++..+..+.+.
T Consensus 22 ~~Eia~~t~~s~~~~~ei~-----d~L~kRL~~~~~hVK~K~Lrilk~l~~~----------------G~~~f~~~~~~~ 80 (122)
T cd03572 22 YEEIAKLTRKSVGSCQELL-----EYLLKRLKRSSPHVKLKVLKIIKHLCEK----------------GNSDFKRELQRN 80 (122)
T ss_pred HHHHHHHHHcCHHHHHHHH-----HHHHHHhcCCCCcchHHHHHHHHHHHhh----------------CCHHHHHHHHHh
Confidence 34555665 3334444444 4588888888899999999999999863 666666666643
Q ss_pred -CcHHHHHHhccCC--------CHHHHHHHHHHHHHH
Q 041050 325 -GALPWIVQNANNE--------AAPIRRHIELALCHL 352 (408)
Q Consensus 325 -g~l~~Lv~lL~~~--------~~~v~~~a~~aL~~L 352 (408)
..|..+.++-... ...||..|-.++..+
T Consensus 81 ~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 81 SAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 2333333333211 345666666555544
No 380
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=32.97 E-value=2.9e+02 Score=29.88 Aligned_cols=82 Identities=18% Similarity=0.161 Sum_probs=55.1
Q ss_pred HHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCC
Q 041050 201 VAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGH 279 (408)
Q Consensus 201 ~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~ 279 (408)
.|+--++-+++. ++.-..+ .+..+-.+| .-.+|.+|+.+--+++-|| +||.. +.+..|.+..+..|
T Consensus 622 ~avLgiAliAMg-eeig~eM----~lR~f~h~l-~yge~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D 688 (878)
T KOG2005|consen 622 LAVLGIALIAMG-EEIGSEM----VLRHFGHLL-HYGEPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGD 688 (878)
T ss_pred chhhhhhhhhhh-hhhhhHH----HHHHHHHHH-HcCCHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcc
Confidence 455556666666 3332222 223333343 4567889999989998888 77754 45666777888889
Q ss_pred HHHHHHHHHHHHHhhc
Q 041050 280 PDVLSQVARGIANFAK 295 (408)
Q Consensus 280 ~~v~~~a~~aL~nL~~ 295 (408)
.++-.++..++.-+..
T Consensus 689 ~eva~naIfamGLiGA 704 (878)
T KOG2005|consen 689 LEVAMNAIFAMGLIGA 704 (878)
T ss_pred hHHHHHHHHHhccccC
Confidence 9998888888887765
No 381
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=32.95 E-value=2.7e+02 Score=31.67 Aligned_cols=60 Identities=22% Similarity=0.361 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhhhhcccc-cchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 041050 35 KTAEEELNKLKSRLGQYTESG-SCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLT 94 (408)
Q Consensus 35 ~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 94 (408)
.+...++..+.++++++.... ..+..+..+...++..+..+-+.+++.+..|.....++.
T Consensus 368 ~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~ 428 (1074)
T KOG0250|consen 368 RKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVK 428 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555444333 455666666666666666666666666666665555543
No 382
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=32.76 E-value=2.6e+02 Score=22.33 Aligned_cols=71 Identities=8% Similarity=0.018 Sum_probs=48.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhc------cCCCHH
Q 041050 267 GIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNA------NNEAAP 340 (408)
Q Consensus 267 ~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL------~~~~~~ 340 (408)
++..|...+.++++.+...|+..|-.+..+ |.+.....+.....+..++... ...+..
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN----------------~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~ 101 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKN----------------CGERFHQEVASNDFAVELLKFDKSKLLGDDVSTN 101 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHH----------------ccHHHHHHHHHhHHHHHHHHhhccccccCCCChH
Confidence 456677888888999999999999988863 4555555666655555555431 123677
Q ss_pred HHHHHHHHHHHHc
Q 041050 341 IRRHIELALCHLA 353 (408)
Q Consensus 341 v~~~a~~aL~~La 353 (408)
||..+...+...+
T Consensus 102 Vr~k~~~l~~~w~ 114 (115)
T cd00197 102 VREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHHHHHh
Confidence 8888877766543
No 383
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=32.41 E-value=2.8e+02 Score=30.59 Aligned_cols=69 Identities=25% Similarity=0.323 Sum_probs=30.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 041050 26 LLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLT 94 (408)
Q Consensus 26 ~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 94 (408)
.+|.-..+-+..|..+..++.++...+.+...+..++.-.+..++....+-.-++.++..+......+.
T Consensus 618 ~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le 686 (769)
T PF05911_consen 618 QLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLE 686 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444434444444444444444333344455555555444444
No 384
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=32.39 E-value=5.1e+02 Score=25.69 Aligned_cols=176 Identities=11% Similarity=0.072 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHHHHHHcC---CchhHHHHHHhCCHHHHHHHHcC---------C-CCHHHHHHHHHHHHHhccCChhhH
Q 041050 151 SEDANVRIHAVKVVANLAA---EEANQEKIVEAGGLSSLLMLLRS---------F-EDETIRRVAAGAIANLAMNAEANQ 217 (408)
Q Consensus 151 s~~~~v~~~A~~aL~nLa~---~~~~~~~i~~~g~i~~L~~lL~~---------~-~~~~v~~~A~~aL~nLa~~~~~~~ 217 (408)
+.+.+-|..|...|.+.-. +......+.+. ++.+++.+.. + .+..+..+|+.+++.+-.+ +..-
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k--~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~~i~ 80 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQDK--MSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-PEIV 80 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHH--HHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-HHHH
Confidence 3445556666666665422 22233333332 4455544421 1 2567888899999999888 7776
Q ss_pred HHHHhcCcH---HHHHHHhh-cCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh----c-CCCHHHHHHHHH
Q 041050 218 ELIMAQGGI---SLLSTTAA-DAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV----R-CGHPDVLSQVAR 288 (408)
Q Consensus 218 ~~i~~~g~i---~~Lv~lL~-~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL----~-~~~~~v~~~a~~ 288 (408)
..+-+.-+. ...+..+. .+.+..+.....++|..= .....++....+..++..+ . -+...+..+...
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q----~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~ 156 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQ----KFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLN 156 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----CCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHH
Confidence 666554443 23334442 333445666666666432 2222233333344444433 2 456678888888
Q ss_pred HHHHhhccchhhhhHHHhhhhhccCChhhHHHHHh-c-CcHHHHHHhccCCCHHHHHHHHHHHHHHc
Q 041050 289 GIANFAKCESRAATQVRFIRCTATGVKSGRSLLIE-D-GALPWIVQNANNEAAPIRRHIELALCHLA 353 (408)
Q Consensus 289 aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~-~-g~l~~Lv~lL~~~~~~v~~~a~~aL~~La 353 (408)
++.+|.. .....|.+ . -++|.++..+-+...++|..|...+..+.
T Consensus 157 i~~~ll~--------------------q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 157 IYKRLLS--------------------QFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 8888875 12222332 2 36777777777777777777655554443
No 385
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=31.51 E-value=4.3e+02 Score=24.54 Aligned_cols=66 Identities=14% Similarity=0.245 Sum_probs=28.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhh
Q 041050 21 AEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQL 93 (408)
Q Consensus 21 ~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 93 (408)
..+.+..+.-.......+++++....+-. .+..|+..+.+..+++.....++++.+......+.++
T Consensus 24 ~~~~~~~~~~~~~~~~sQ~~id~~~~e~~-------~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L 89 (251)
T PF11932_consen 24 DQAQQVQQQWVQAAQQSQKRIDQWDDEKQ-------ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASL 89 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333322 3334444444444444444444444444444444433
No 386
>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.23 E-value=2.2e+02 Score=28.81 Aligned_cols=64 Identities=22% Similarity=0.335 Sum_probs=50.0
Q ss_pred eeccCCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHH
Q 041050 5 FYDTGFEPGASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDET 73 (408)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (408)
+-+..|++......-+..+++-+..|+...+.+++-+..+|...+++..+. ++.+.+++|....
T Consensus 50 ~q~~~yss~~~r~s~ls~f~dn~r~E~~knkElqe~iK~lkd~a~~L~esd-----a~kkaR~k~~~~e 113 (459)
T KOG2580|consen 50 SQTRGYSSPGRRRSFLSEFSDNVRAELDKNKELQESIKKLKDRAGELEESD-----ALKKARTKYETAE 113 (459)
T ss_pred cccccccCCCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhccch-----HHHHHHHHHHHHH
Confidence 334455555666778899999999999999999999999999987666553 5677777777555
No 387
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=31.13 E-value=3.4e+02 Score=26.43 Aligned_cols=54 Identities=26% Similarity=0.381 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhh
Q 041050 39 EELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQ 92 (408)
Q Consensus 39 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 92 (408)
+++..++..+.+...+.+..+.++.+++..++.....-..+.+....+...+.+
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555454444444555555555554444444444444444444433
No 388
>PHA01750 hypothetical protein
Probab=30.93 E-value=60 Score=23.58 Aligned_cols=33 Identities=15% Similarity=0.317 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhhhcccccchhHhhHHHHHhH
Q 041050 37 AEEELNKLKSRLGQYTESGSCRDAEMSKLHKTL 69 (408)
Q Consensus 37 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (408)
-+.|+.+++.++++.+...+.++..+.+++|++
T Consensus 40 V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 40 VNSELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 345566666666554444444444444444443
No 389
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=30.92 E-value=6.6e+02 Score=27.29 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC-CHHHHHHHHHHHHHHccC
Q 041050 279 HPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE-AAPIRRHIELALCHLAQH 355 (408)
Q Consensus 279 ~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~a~~aL~~La~~ 355 (408)
.+..+..++..|+.+.. ..+.+...|.+..+++.|..+|..+ +..+...|+.+|..|-=.
T Consensus 81 ~~~~Rl~~L~Ll~~~v~-----------------~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVR-----------------SQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred CchhHHHHHHHHHHHHh-----------------cCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 34555667777777775 6788889999999999999988765 555666777777766533
No 390
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=30.81 E-value=88 Score=22.65 Aligned_cols=15 Identities=27% Similarity=0.607 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHhh
Q 041050 35 KTAEEELNKLKSRLG 49 (408)
Q Consensus 35 ~~~~~e~~~~~~~~~ 49 (408)
++++.++..+.+.|+
T Consensus 14 ~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 14 EKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHc
Confidence 344444555544444
No 391
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=30.54 E-value=3.2e+02 Score=25.31 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=38.7
Q ss_pred chHHHHHHHHHhHHHH------HHH--HHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHH
Q 041050 16 AAEDIAEIRKLLQNEI------HMR--KTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQK 76 (408)
Q Consensus 16 ~~~~~~~~~~~~~~e~------~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (408)
..++|.-|.++-+--. +.. .-.++=+.-+++.++++++....+.+++.+-.|+...+++++
T Consensus 66 SkElG~~Ltri~~~hr~iE~~lk~f~~~L~~~lI~pLe~k~E~wkk~~~~ldKd~~k~~kk~R~elKk~ 134 (231)
T cd07643 66 TKEIGSALTRMCMRHKSIETKLKQFTSALMDCLVNPLQEKIEEWKKVANQLDKDHAKEYKKARQEIKKK 134 (231)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666544332 111 223334566777888888888888888888788877766543
No 392
>PHA02562 46 endonuclease subunit; Provisional
Probab=30.37 E-value=3.7e+02 Score=28.10 Aligned_cols=8 Identities=13% Similarity=0.243 Sum_probs=3.7
Q ss_pred eccCCCCC
Q 041050 6 YDTGFEPG 13 (408)
Q Consensus 6 ~~~~~~~~ 13 (408)
|-..+...
T Consensus 290 C~~~~~~~ 297 (562)
T PHA02562 290 CTQQISEG 297 (562)
T ss_pred CCCcCCCc
Confidence 44444443
No 393
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=30.31 E-value=4e+02 Score=30.37 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=8.9
Q ss_pred HHHHHHHHcCCCCHHHHH
Q 041050 183 LSSLLMLLRSFEDETIRR 200 (408)
Q Consensus 183 i~~L~~lL~~~~~~~v~~ 200 (408)
.|+++..|.. +||.|..
T Consensus 572 ~pTil~~le~-ddp~V~N 588 (1074)
T KOG0250|consen 572 FPTILDALEF-DDPEVLN 588 (1074)
T ss_pred CCceeeeeec-CChHHHH
Confidence 3566666653 4554443
No 394
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=30.18 E-value=89 Score=29.97 Aligned_cols=55 Identities=15% Similarity=0.061 Sum_probs=44.3
Q ss_pred hcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc---------------hhHHHHHhCCcHHHHHHHHhc
Q 041050 323 EDGALPWIVQNANNEAAPIRRHIELALCHLAQHE---------------VNAREMISGGALWELVRISRD 377 (408)
Q Consensus 323 ~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~---------------~~~~~l~~~g~i~~L~~ll~~ 377 (408)
+...+..++.-|.+.+...|..|+.+|..++.+. .|..-+.+.|+++.|..++..
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3456778899999899999999999999999762 244445689999999998873
No 395
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=30.10 E-value=1.1e+02 Score=29.25 Aligned_cols=51 Identities=31% Similarity=0.453 Sum_probs=41.2
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc---------------hhHHHHHHhCCHHHHHHHHc
Q 041050 141 GLHKILSLLESEDANVRIHAVKVVANLAAEE---------------ANQEKIVEAGGLSSLLMLLR 191 (408)
Q Consensus 141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~---------------~~~~~i~~~g~i~~L~~lL~ 191 (408)
-+..+++-|.+.+...|..|+++|.-++.+. .|...+.+.||++.|+.+|.
T Consensus 61 ~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 61 FIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3678888888889999999999999887632 35566788899999999885
No 396
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=29.97 E-value=3.9e+02 Score=23.59 Aligned_cols=108 Identities=15% Similarity=0.132 Sum_probs=65.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHH---HcCCCCHHH---HHHHHHHHHHhccCCh
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLML---LRSFEDETI---RRVAAGAIANLAMNAE 214 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~l---L~~~~~~~v---~~~A~~aL~nLa~~~~ 214 (408)
+|.++.+..++++.++..|...+..+.. .+..-..-.-. |+..-... +..+..... .......++.+...+.
T Consensus 47 vp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~-gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r 125 (187)
T PF12830_consen 47 VPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSE-GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNR 125 (187)
T ss_pred HhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhccc
Confidence 7999999999999999999999999977 44433322222 44433333 221111111 4445667777777657
Q ss_pred hhHHHHHhcCcHHHHHHHhhcC-------CCHHHHHHHHHHHHHHhCC
Q 041050 215 ANQELIMAQGGISLLSTTAADA-------EDPQTLRMVAGAIANLCGN 255 (408)
Q Consensus 215 ~~~~~i~~~g~i~~Lv~lL~~~-------~~~~v~~~a~~aL~nL~~~ 255 (408)
..|..+ +..|+..+... ..+.-......+..||+.-
T Consensus 126 ~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~~~~Fla~nLA~l 168 (187)
T PF12830_consen 126 KSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLDFLLFLAENLATL 168 (187)
T ss_pred HhHHHH-----HHHHHHHHHhhccccccccchhHHHHHHHHHHHHhcC
Confidence 778777 44455554322 2344455666777777733
No 397
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=29.86 E-value=1.2e+02 Score=27.54 Aligned_cols=55 Identities=16% Similarity=0.232 Sum_probs=38.0
Q ss_pred HHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 041050 40 ELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLT 94 (408)
Q Consensus 40 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 94 (408)
+|..+|+.+.......+....++...++.|.+-..+|....+|++.|...=..|.
T Consensus 33 ~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs 87 (207)
T PF05546_consen 33 EIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWS 87 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 4555666655555555566667777777888888888888888888877644443
No 398
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=29.62 E-value=2.9e+02 Score=28.23 Aligned_cols=54 Identities=30% Similarity=0.275 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHcC-C-chhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccC
Q 041050 154 ANVRIHAVKVVANLAA-E-EANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMN 212 (408)
Q Consensus 154 ~~v~~~A~~aL~nLa~-~-~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~ 212 (408)
...|..|+.+|+.++. - ...-..++.. .|+..|.+ ....-|..|+-+|..-+..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~----~L~~~L~S-~sa~qR~~aalvl~ewa~~ 156 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQP----LLLPYLNS-PSATQRLLAALVLEEWAKA 156 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHH----HHHHHhcc-hhHHHHHHHHHHHHHHHHh
Confidence 4568889999998876 2 3333333222 57788874 4555555566677666665
No 399
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=29.59 E-value=63 Score=30.33 Aligned_cols=41 Identities=20% Similarity=0.171 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHH
Q 041050 31 IHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLED 71 (408)
Q Consensus 31 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (408)
..|...+|+|+.+.+..+..++.+.++++.+..+|..|..-
T Consensus 92 R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRy 132 (248)
T PF08172_consen 92 RQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRY 132 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44558888888888888877777766666555555555443
No 400
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=29.45 E-value=4.2e+02 Score=26.89 Aligned_cols=17 Identities=18% Similarity=0.378 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 041050 32 HMRKTAEEELNKLKSRL 48 (408)
Q Consensus 32 ~~~~~~~~e~~~~~~~~ 48 (408)
++.+.++.++..+.+.+
T Consensus 38 ~~l~q~q~ei~~~~~~i 54 (420)
T COG4942 38 KQLKQIQKEIAALEKKI 54 (420)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555444443
No 401
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=29.16 E-value=4.2e+02 Score=30.05 Aligned_cols=68 Identities=18% Similarity=0.165 Sum_probs=33.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHH---HHhhhHHHHHHH
Q 041050 19 DIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETL---QKRKLEEEIVIL 86 (408)
Q Consensus 19 ~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l 86 (408)
++..+...+..+..++++.......+.++++.+......+.+|.+.+.++.+.+.. ....+|.+++.+
T Consensus 503 elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~l 573 (1195)
T KOG4643|consen 503 ELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDL 573 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHH
Confidence 33334444444444444444444444444444445555666677777777766553 333444444433
No 402
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=28.97 E-value=4e+02 Score=27.92 Aligned_cols=73 Identities=21% Similarity=0.261 Sum_probs=36.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhh
Q 041050 20 IAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQ 92 (408)
Q Consensus 20 ~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 92 (408)
+..+++-|++-...-+...+|+..++..++.+..+.+..+.++..++++...-...=..|+.++..+++.+..
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea 355 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEA 355 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Confidence 4444555555555556666666666666655544444444444444444443333333445555555554433
No 403
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=28.84 E-value=5e+02 Score=24.46 Aligned_cols=183 Identities=15% Similarity=0.160 Sum_probs=88.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM 221 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~ 221 (408)
+.-|...|+.+++..+ ...+.|+. ..+++..-||-|+..= .++.+...++..|.+|+.-
T Consensus 15 LkdL~r~lr~dd~~~~-~v~r~lg~--------~~iv~~DLiPiL~~~~---~~~~l~~~~l~LLV~LT~P--------- 73 (266)
T PF04821_consen 15 LKDLKRFLRRDDEDQR-DVRRQLGE--------WNIVQKDLIPILISYK---DDDKLFLACLRLLVNLTWP--------- 73 (266)
T ss_pred HHHHHHHHHHhCcchH-HHHHHHHH--------hchhhhhHHHHHHhcc---CchHHHHHHHHHHHHhCCC---------
Confidence 4556666665555554 44444433 2333333444333222 2667788888888888864
Q ss_pred hcCcHHHHHHHhhcC-CCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhc-----------CCCHHHHHHHHHH
Q 041050 222 AQGGISLLSTTAADA-EDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVR-----------CGHPDVLSQVARG 289 (408)
Q Consensus 222 ~~g~i~~Lv~lL~~~-~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~-----------~~~~~v~~~a~~a 289 (408)
+..+ .... .+...+........++. ..+..+.+.+.+++++.++. ..|..+.+.+...
T Consensus 74 ----~~~~---~~~~~~~~~~~~~~~~l~~~l~---~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~L 143 (266)
T PF04821_consen 74 ----IELL---VESQPKDKNQRRNIPELLKYLQ---SYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTL 143 (266)
T ss_pred ----HHHh---ccCCCCChHHHHHHHHHHHHHH---HHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHH
Confidence 1111 1111 12222222222222221 22334444555555554441 1245567778888
Q ss_pred HHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC-CHHHHHHHHHHHHHHccCc
Q 041050 290 IANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE-AAPIRRHIELALCHLAQHE 356 (408)
Q Consensus 290 L~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~a~~aL~~La~~~ 356 (408)
++|+..-..+......+ -....-+......+.+.|+...|+.++.+. ..+-.....-++..|-.+.
T Consensus 144 iRNlL~Ip~~~~~~~~~-~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~ 210 (266)
T PF04821_consen 144 IRNLLAIPDPPSASKRS-DEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQ 210 (266)
T ss_pred HHHHhcCCCCccccccc-chhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCC
Confidence 88887520000000000 000001233444556789999998888765 3334446666777776664
No 404
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=28.78 E-value=2.3e+02 Score=21.98 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhhhhccccc-------chhHhhHHHHHhHHHHHHHHhhhHHHHHHHHh
Q 041050 34 RKTAEEELNKLKSRLGQYTESGS-------CRDAEMSKLHKTLEDETLQKRKLEEEIVILRS 88 (408)
Q Consensus 34 ~~~~~~e~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 88 (408)
.+.+.+||..|+.++++ .+... ++.+|+..++.-+ ....|+.+-.++..|..
T Consensus 26 ~~~L~eEI~~Lr~qve~-nPevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~ 84 (86)
T PF12711_consen 26 NEALKEEIQLLREQVEH-NPEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRD 84 (86)
T ss_pred HHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHh
Confidence 38888999999999874 33333 3333443333333 22445555555555544
No 405
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=28.74 E-value=4.7e+02 Score=24.12 Aligned_cols=129 Identities=15% Similarity=0.090 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcC------C------CH-----HHHHHHHHHHHHHhCCch
Q 041050 195 DETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADA------E------DP-----QTLRMVAGAIANLCGNDK 257 (408)
Q Consensus 195 ~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~------~------~~-----~v~~~a~~aL~nL~~~~~ 257 (408)
+......++..+..|... ++....+.+.+-++.+...|... . +| ++...=...|+-|+.++.
T Consensus 77 ~~~y~~vGc~L~~~Ll~~-~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~ 155 (226)
T PF14666_consen 77 NQKYVRVGCQLLETLLSS-PEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPN 155 (226)
T ss_pred chHHHHHHHHHHHHHHcC-cHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChh
Confidence 355566666677777777 77777777888888777766432 1 11 122333467778889999
Q ss_pred hHHHHHhcccHHHHHHhhcCC-CHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHH-HHHHhcc
Q 041050 258 LQMKLRSEGGIRALLGMVRCG-HPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALP-WIVQNAN 335 (408)
Q Consensus 258 ~~~~i~~~g~l~~L~~lL~~~-~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~-~Lv~lL~ 335 (408)
+...+-+.|.+..+..+...+ +.++.+ -.|.+|=. +. +|... .|-+.|.
T Consensus 156 Gl~lLe~~~if~~l~~i~~~~~~~~l~k---lil~~LDY-----------------~~---------~~~~R~iLsKaLt 206 (226)
T PF14666_consen 156 GLKLLERWNIFTMLYHIFSLSSRDDLLK---LILSSLDY-----------------SV---------DGHPRIILSKALT 206 (226)
T ss_pred HHHHHHHCCHHHHHHHHHccCchHHHHH---HHHhhCCC-----------------CC---------ccHHHHHHHHHHh
Confidence 999999999999999999654 333333 35555532 11 12222 3345677
Q ss_pred CCCHHHHHHHHHHHHHHc
Q 041050 336 NEAAPIRRHIELALCHLA 353 (408)
Q Consensus 336 ~~~~~v~~~a~~aL~~La 353 (408)
+++..+|..|...|..+.
T Consensus 207 ~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 207 SGSESIRLYATKHLRVLL 224 (226)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 888899999998887764
No 406
>PF14961 BROMI: Broad-minded protein
Probab=28.55 E-value=3.9e+02 Score=30.95 Aligned_cols=203 Identities=14% Similarity=0.091 Sum_probs=108.6
Q ss_pred HHHHHHHHHHcCCch-hHHHHHHhCC----HHHHHHHHcCCC-----CHHHHHHHHHHHHHhccCChhhHHHHHhc----
Q 041050 158 IHAVKVVANLAAEEA-NQEKIVEAGG----LSSLLMLLRSFE-----DETIRRVAAGAIANLAMNAEANQELIMAQ---- 223 (408)
Q Consensus 158 ~~A~~aL~nLa~~~~-~~~~i~~~g~----i~~L~~lL~~~~-----~~~v~~~A~~aL~nLa~~~~~~~~~i~~~---- 223 (408)
.....+|..|+..++ ..+.+..... +.++..+|+..+ ......+.+.+|+.||.. +.....+...
T Consensus 484 slV~eiL~~lc~~~~ca~eCL~~~~Vi~~LL~Pi~~~l~~~~~~~~~~e~tli~iAdiLariAs~-~~Gl~lLLyg~n~~ 562 (1296)
T PF14961_consen 484 SLVMEILRMLCDQKECAVECLYKDTVIEVLLQPIHSLLKGTEASKNCSETTLIHIADILARIAST-EEGLALLLYGENMS 562 (1296)
T ss_pred HHHHHHHHHHhcCHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHhh-ccchhhhhcccccC
Confidence 345667788887443 3444434444 455566676431 255667788999999998 7777666542
Q ss_pred -------CcHHHHH----HHhhcC--------CCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcC-------
Q 041050 224 -------GGISLLS----TTAADA--------EDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRC------- 277 (408)
Q Consensus 224 -------g~i~~Lv----~lL~~~--------~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~------- 277 (408)
-+...++ ++|.+. ..|.|.-.-..++..|...-++-+.+...|.-..+...-+.
T Consensus 563 s~~~~~~~~ahiIaqFtkklL~~~~~~~~~s~~~~~v~gafifvcRQ~Y~TCeGL~~L~pY~LH~~ia~Awkk~s~lse~ 642 (1296)
T PF14961_consen 563 SSEEESSTAAHIIAQFTKKLLDEDISTLSGSEMLPVVKGAFIFVCRQMYSTCEGLQVLIPYGLHESIANAWKKTSLLSER 642 (1296)
T ss_pred ccccCCCchhhHHHHHHHHHcCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhHHHhhhcchHHHHHHHHHHhhhhhcc
Confidence 1222333 233211 01222222233333333333444444444443333322210
Q ss_pred ---C---C-------HHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC---CHHH
Q 041050 278 ---G---H-------PDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE---AAPI 341 (408)
Q Consensus 278 ---~---~-------~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~---~~~v 341 (408)
+ . .+-+...+| -..+.+.+-+||++|.+...+...|++..-+..+.+. ...+
T Consensus 643 ~~tpv~~s~s~ss~~~~~~n~~~W------------ee~LlD~llnfa~TPkG~~lL~~tg~i~~Cv~~m~~~~~kklQv 710 (1296)
T PF14961_consen 643 IPTPVPGSDSVSSVSQESQNIMLW------------EETLLDNLLNFAATPKGLLLLQQTGAINECVSFMFNRYTKKLQV 710 (1296)
T ss_pred CCCCCCCCCccccccccchhHHHH------------HHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHHHHhhcccc
Confidence 0 0 001111111 0123334557779999999999999998877766532 1112
Q ss_pred ---HHH-HHHHHHHHccCchhHHHHHhCCcHHHHHH
Q 041050 342 ---RRH-IELALCHLAQHEVNAREMISGGALWELVR 373 (408)
Q Consensus 342 ---~~~-a~~aL~~La~~~~~~~~l~~~g~i~~L~~ 373 (408)
.+. --.++.+++........+.+.|.+..|+.
T Consensus 711 S~~ekfgyGv~vtqvasT~~G~~AL~~sGfi~~Lv~ 746 (1296)
T PF14961_consen 711 SRCEKFGYGVMVTQVASTAAGAQALQKSGFIKALVT 746 (1296)
T ss_pred ccccccCccEEEEEeecCchHHHHHHhccHHHHHHH
Confidence 111 12345667777888888889999988876
No 407
>PLN03205 ATR interacting protein; Provisional
Probab=28.54 E-value=6.4e+02 Score=25.60 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=68.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHH----cCCchhHHHHHHhCCHHHHHHHH----cCCCCHHHHHHHHHHHHHhcc--
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANL----AAEEANQEKIVEAGGLSSLLMLL----RSFEDETIRRVAAGAIANLAM-- 211 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nL----a~~~~~~~~i~~~g~i~~L~~lL----~~~~~~~v~~~A~~aL~nLa~-- 211 (408)
+++|+.+..-++..+...++++|..+ ..++..-+.--+. -.-.|+.++ .......++-.|+.++--+.+
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~-NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDA-NWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccc-cHHHHHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 45566666677777777777776643 3322100000000 022222322 112234566666665544433
Q ss_pred CChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHH
Q 041050 212 NAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLR 263 (408)
Q Consensus 212 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~ 263 (408)
+...-|+.+...-++..+-.+|++...--|+..+...+.-|-.++..-..++
T Consensus 404 na~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFc 455 (652)
T PLN03205 404 DAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFD 455 (652)
T ss_pred chhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHh
Confidence 4344566777777778888888766666788888888877766666555554
No 408
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.43 E-value=3.7e+02 Score=25.20 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=25.2
Q ss_pred HHHHHHHHhhhhcccccchhHhhHHHHHh-HHHHHHHHhhhHHHHHHHH
Q 041050 40 ELNKLKSRLGQYTESGSCRDAEMSKLHKT-LEDETLQKRKLEEEIVILR 87 (408)
Q Consensus 40 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~ 87 (408)
++-.+-+|+.+++.+ ...+.|+++.++. .+++..+.....+.+..|.
T Consensus 247 ~ileKdkqisnLKad-~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~ 294 (305)
T KOG3990|consen 247 LILEKDKQISNLKAD-KEYQKELEKKHKERVQQLQKKKEESLKAIAQLR 294 (305)
T ss_pred HHHhhhhhhhccCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566666655 2334666666665 5555555545555544443
No 409
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=28.32 E-value=82 Score=22.18 Aligned_cols=35 Identities=14% Similarity=0.297 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHH
Q 041050 36 TAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLE 70 (408)
Q Consensus 36 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (408)
.+|.++.++...+...+.+++.+.++++++.+-.+
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555554444444444444444444443
No 410
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=28.24 E-value=39 Score=29.61 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=15.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 041050 21 AEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESG 55 (408)
Q Consensus 21 ~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~ 55 (408)
-+=.-+||.|+..++.+.+++..||.-+.+++.+.
T Consensus 13 IERnalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 13 IERNALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHCH--------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445678888888888888888887777666554
No 411
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=27.52 E-value=8.8e+02 Score=30.63 Aligned_cols=183 Identities=16% Similarity=0.120 Sum_probs=89.5
Q ss_pred HhhcCCCHHHHHHHHHHHHHHcCCchhH-------HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH
Q 041050 147 SLLESEDANVRIHAVKVVANLAAEEANQ-------EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL 219 (408)
Q Consensus 147 ~lL~s~~~~v~~~A~~aL~nLa~~~~~~-------~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 219 (408)
..+...++++|..+...+.-+-....+. .+.+ ...+..+..+-..+.++.++..... ++- ...-..
T Consensus 488 ~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v-~~vl~~ll~~aia~~~~~i~~~v~~---~l~---~~~~~~ 560 (2341)
T KOG0891|consen 488 SYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVV-KEVLSALLTVAIADTDPDIRIRVLS---SLN---ERFDAQ 560 (2341)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHH-HHHHHHHHHHhccCCCcchhhhHHh---hhc---cchhhh
Confidence 4455688888888865555333211110 1112 2234455555444455555543222 221 111112
Q ss_pred HHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccch
Q 041050 220 IMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCES 298 (408)
Q Consensus 220 i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~ 298 (408)
..+.+.+..+...+ ++..-.++..+...+.+++ .|+.....-...--+..+-.+-.+.-..+...++.-+..+..
T Consensus 561 laQ~~~lr~~~~al-~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~--- 636 (2341)
T KOG0891|consen 561 LAQPDLLRLLFIAL-HDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELII--- 636 (2341)
T ss_pred hcCchhHHHHHHHh-hhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHH---
Confidence 33333344444444 4556678888888888888 676443322222233323333333333333333322222221
Q ss_pred hhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 299 RAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
+.+.+..-.+ ...+.+++..+...+..+...+..++..||..
T Consensus 637 --------------~~~~~i~~~v-~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v 678 (2341)
T KOG0891|consen 637 --------------SSPVLISPYV-GPILLVLLPKLQDPSSGVEKAVLETIGELCAV 678 (2341)
T ss_pred --------------HHHHHHHhhc-CchHHHHHHHHhccchhhHHHHHHHHHHHHHh
Confidence 1222222222 24457788888888778888888888888764
No 412
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=27.47 E-value=1.3e+02 Score=26.23 Aligned_cols=11 Identities=18% Similarity=0.265 Sum_probs=5.3
Q ss_pred chHHHHHHHHH
Q 041050 16 AAEDIAEIRKL 26 (408)
Q Consensus 16 ~~~~~~~~~~~ 26 (408)
-.++|+-|.++
T Consensus 82 l~~vI~fLq~l 92 (161)
T TIGR02894 82 LQDVISFLQNL 92 (161)
T ss_pred HHHHHHHHHHH
Confidence 34555555443
No 413
>PF14182 YgaB: YgaB-like protein
Probab=27.42 E-value=1.9e+02 Score=21.97 Aligned_cols=39 Identities=28% Similarity=0.389 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHH
Q 041050 27 LQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLE 70 (408)
Q Consensus 27 ~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (408)
|+.|+-|....|.++..+.+.- ...++..||...++.|.
T Consensus 19 LQsElERCqeIE~eL~~l~~ea-----~l~~i~~EI~~mkk~Lk 57 (79)
T PF14182_consen 19 LQSELERCQEIEKELKELEREA-----ELHSIQEEISQMKKELK 57 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHH
Confidence 5778888888888887776552 12245556655555554
No 414
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=27.38 E-value=4.5e+02 Score=23.44 Aligned_cols=70 Identities=13% Similarity=0.191 Sum_probs=33.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhh
Q 041050 22 EIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQ 92 (408)
Q Consensus 22 ~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 92 (408)
.....++.-.+..+..+.++..++..++.....-. -..|-.++-++++.+..+...+..++......+|+
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~-~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~ 135 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGRE-ESEEREELLEELEELKKELKELKKELEKYSENDPE 135 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 33344444444444555555555555543322111 12344455555555555666666666655444443
No 415
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=26.96 E-value=2.7e+02 Score=27.95 Aligned_cols=83 Identities=14% Similarity=0.072 Sum_probs=0.0
Q ss_pred cHHHHHHhccCCCHHHHHHHHHHHHHHccC--chhHHHHHhCCcHHHHHHHHh-cCCHHHHHHHHH----HH--------
Q 041050 326 ALPWIVQNANNEAAPIRRHIELALCHLAQH--EVNAREMISGGALWELVRISR-DCSREDIRSLAH----RT-------- 390 (408)
Q Consensus 326 ~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~g~i~~L~~ll~-~~~~~~~~~~A~----~~-------- 390 (408)
++..|.+.+.+.++.|...|...+..++.+ ...+..+........|..++. +..+....+... |.
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp~ 125 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDPS 125 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCcc
Q ss_pred HhccHhhHHHHHhhhhcC
Q 041050 391 LSSSLTFRAEMRRLRIEF 408 (408)
Q Consensus 391 L~~~~~~~~~~~~~~~~~ 408 (408)
|+.-+....-+++.||.|
T Consensus 126 lsLi~~l~~klk~~g~~f 143 (462)
T KOG2199|consen 126 LSLISALYKKLKEEGITF 143 (462)
T ss_pred hhHHHHHHHHHHHcCCCc
No 416
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.91 E-value=84 Score=21.08 Aligned_cols=11 Identities=18% Similarity=0.398 Sum_probs=4.3
Q ss_pred HHHHHHHHHhh
Q 041050 39 EELNKLKSRLG 49 (408)
Q Consensus 39 ~e~~~~~~~~~ 49 (408)
-+-..||...+
T Consensus 5 ~Dy~~LK~~yd 15 (45)
T PF02183_consen 5 RDYDALKASYD 15 (45)
T ss_pred HHHHHHHHHHH
Confidence 33334444433
No 417
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=26.85 E-value=61 Score=25.15 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=19.1
Q ss_pred hhHhhHHHHHhHHHHHHHHhhhHHHHHH
Q 041050 58 RDAEMSKLHKTLEDETLQKRKLEEEIVI 85 (408)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (408)
+..|+.+++++|++|...+..|+.-+.+
T Consensus 13 LeqeV~~Lq~~L~~E~~~r~aLe~al~~ 40 (88)
T PF14389_consen 13 LEQEVAELQKQLQEEQDLRRALEKALGR 40 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4556667777777777777777766655
No 418
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=26.70 E-value=2.7e+02 Score=22.29 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=15.2
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 041050 17 AEDIAEIRKLLQNEIHMRKTAEEELNKL 44 (408)
Q Consensus 17 ~~~~~~~~~~~~~e~~~~~~~~~e~~~~ 44 (408)
.+.+..+...+.+--.|-.+.|.++..+
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHL 61 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455555555555555555555555544
No 419
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=26.41 E-value=1.8e+02 Score=23.29 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=23.1
Q ss_pred HhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhhHHHHHHHhhh
Q 041050 60 AEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLTFEADQMQKCL 104 (408)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~ 104 (408)
.++..+++.++....+...|.+++..|++.. ...+..+|+.+
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~---dyiEe~AR~~L 75 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLKGGQ---EAIEERARNEL 75 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcH---HHHHHHHHHHc
Confidence 3444444445555566667778888777632 23333455543
No 420
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.40 E-value=8.8e+02 Score=26.51 Aligned_cols=146 Identities=15% Similarity=0.064 Sum_probs=74.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHH
Q 041050 183 LSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKL 262 (408)
Q Consensus 183 i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i 262 (408)
+..|..-|..+.|++.|..|-.+|..++.+ |+.-. .-.-++.+++.|=-...|..+|..+.+....--.-
T Consensus 7 Le~lCk~LY~s~D~~~R~~AE~~L~e~s~s-pecls---------kCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~ 76 (1082)
T KOG1410|consen 7 LESLCKDLYESTDPTARHRAEKALAELSES-PECLS---------KCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLE 76 (1082)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHccC-HHHHH---------HHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHH
Confidence 445555555567899999999999999998 65433 22233344455555556666666665332210000
Q ss_pred HhcccHHHHHHhhcCCCHHHHH----HHHHHHHHhhccchhhhhHHHhhhhhccCChh-hHHHHHhcCcHHHHHHhccCC
Q 041050 263 RSEGGIRALLGMVRCGHPDVLS----QVARGIANFAKCESRAATQVRFIRCTATGVKS-GRSLLIEDGALPWIVQNANNE 337 (408)
Q Consensus 263 ~~~g~l~~L~~lL~~~~~~v~~----~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~-~~~~i~~~g~l~~Lv~lL~~~ 337 (408)
.....-..+++.+..+-|...- .-+..++.++.- |.-+ .+....=-+.+..+.+.++.+
T Consensus 77 qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~----------------gW~d~~k~~y~FRd~v~~~~kfl~~~ 140 (1082)
T KOG1410|consen 77 QRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKL----------------GWFDQQKDEYVFRDPVDDVTKFLQMD 140 (1082)
T ss_pred HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhc----------------cccccccccchhhhhHHHHHHHhccC
Confidence 1112223366666554443322 223334444430 1111 111222224566667777666
Q ss_pred CHHHHHHHHHHHHHHcc
Q 041050 338 AAPIRRHIELALCHLAQ 354 (408)
Q Consensus 338 ~~~v~~~a~~aL~~La~ 354 (408)
+.+-..-++.+|..|.+
T Consensus 141 ~ve~~~igv~iLsqLvq 157 (1082)
T KOG1410|consen 141 NVEHCIIGVQILSQLVQ 157 (1082)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 55555555666655553
No 421
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=26.36 E-value=4e+02 Score=31.05 Aligned_cols=12 Identities=25% Similarity=0.590 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHh
Q 041050 37 AEEELNKLKSRL 48 (408)
Q Consensus 37 ~~~e~~~~~~~~ 48 (408)
++.++..++.+.
T Consensus 826 ~~~ei~~l~~~~ 837 (1163)
T COG1196 826 LEQEIEELEEEI 837 (1163)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 422
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=26.12 E-value=3.5e+02 Score=27.32 Aligned_cols=58 Identities=24% Similarity=0.332 Sum_probs=32.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHH
Q 041050 19 DIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVIL 86 (408)
Q Consensus 19 ~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (408)
....+..-+.+-...+..+++++..+|.++. .|+.-....||.|....+.||+.++.+
T Consensus 213 ~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~----------~e~~~~~~~LqEEr~R~erLEeqlNd~ 270 (395)
T PF10267_consen 213 GLQKILEELREIKESQSRLEESIEKLKEQYQ----------REYQFILEALQEERYRYERLEEQLNDL 270 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444444454445556778888888877642 344445555555555555555555443
No 423
>PRK10722 hypothetical protein; Provisional
Probab=26.03 E-value=2.1e+02 Score=26.74 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=26.9
Q ss_pred HhHHHHHHHHHH----HHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHH
Q 041050 26 LLQNEIHMRKTA----EEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDET 73 (408)
Q Consensus 26 ~~~~e~~~~~~~----~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (408)
-|.+|..||..+ +.++..++.+..++ +.++..+.+||++++
T Consensus 159 ~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~L-------q~~L~~t~rKLEnLT 203 (247)
T PRK10722 159 ALAEERQRYQKLQQSSDSELDALRQQQQRL-------QYQLELTTRKLENLT 203 (247)
T ss_pred hHHHHHHHHHHHhhccHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 356788888888 77777777775533 344556666666654
No 424
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=25.89 E-value=2.8e+02 Score=20.63 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=22.5
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 041050 16 AAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQY 51 (408)
Q Consensus 16 ~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~ 51 (408)
....|+.||+--|.=.+..-+...-|.+|+.+..+.
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~ 45 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKEL 45 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345677777666665566666666677776665533
No 425
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=25.21 E-value=3e+02 Score=30.13 Aligned_cols=43 Identities=30% Similarity=0.353 Sum_probs=18.7
Q ss_pred HHHHHhHHHHHHHHhhhHH----HHHHHHhhhhhhhHHHHHHHhhhh
Q 041050 63 SKLHKTLEDETLQKRKLEE----EIVILRSQLLQLTFEADQMQKCLE 105 (408)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~~~~~~~~r~~~~ 105 (408)
+++..+|+.-...++.+.+ .+..+..+++.+...+.++++.+.
T Consensus 596 e~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~ 642 (717)
T PF10168_consen 596 EKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELE 642 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 4445555554444443333 444444444444333333444443
No 426
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=25.20 E-value=3.7e+02 Score=21.72 Aligned_cols=70 Identities=13% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhhHHHHHHH
Q 041050 32 HMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLTFEADQMQ 101 (408)
Q Consensus 32 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r 101 (408)
..+..++..+..+...++..+-+...+.++-..+...++.+..++.+...-++.|..++.+....-+..+
T Consensus 9 as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK 78 (107)
T PF09304_consen 9 ASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEK 78 (107)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 427
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.19 E-value=2.6e+02 Score=27.43 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhhhhc
Q 041050 36 TAEEELNKLKSRLGQYT 52 (408)
Q Consensus 36 ~~~~e~~~~~~~~~~~~ 52 (408)
..|||+..+..-.+.++
T Consensus 222 r~eeeme~~~aeq~slk 238 (365)
T KOG2391|consen 222 RREEEMERLQAEQESLK 238 (365)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444433333
No 428
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=25.01 E-value=6.1e+02 Score=24.44 Aligned_cols=40 Identities=35% Similarity=0.380 Sum_probs=33.4
Q ss_pred chhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhhHH
Q 041050 57 CRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLTFE 96 (408)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 96 (408)
.+..|...+.-+|+++..-++.+|.++....+.|..-..+
T Consensus 67 ~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d 106 (305)
T PF14915_consen 67 VLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQD 106 (305)
T ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566788899999999999999999999999888765433
No 429
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=25.00 E-value=2.8e+02 Score=29.36 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=12.0
Q ss_pred hHHHHHHHHhhhhhhhHHHHHHHhhhh
Q 041050 79 LEEEIVILRSQLLQLTFEADQMQKCLE 105 (408)
Q Consensus 79 ~~~~~~~l~~~l~~~~~~~~~~r~~~~ 105 (408)
+++....+...+..+..++.++|..+.
T Consensus 391 ie~~q~~~~~~l~~L~~dE~~Ar~~l~ 417 (560)
T PF06160_consen 391 IEEEQEEINESLQSLRKDEKEAREKLQ 417 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444555444
No 430
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=24.95 E-value=2.9e+02 Score=27.89 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=20.6
Q ss_pred cchhHhhHHHHHhHHHHHHHHhhhHHH
Q 041050 56 SCRDAEMSKLHKTLEDETLQKRKLEEE 82 (408)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (408)
-...+|.+.++++|++++..|+.+-+-
T Consensus 288 ~~~reen~rlQrkL~~e~erRealcr~ 314 (552)
T KOG2129|consen 288 VDHREENERLQRKLINELERREALCRM 314 (552)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888999999998888765443
No 431
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=24.68 E-value=1.6e+02 Score=25.51 Aligned_cols=11 Identities=36% Similarity=0.573 Sum_probs=4.0
Q ss_pred hhhHHHHHHHH
Q 041050 77 RKLEEEIVILR 87 (408)
Q Consensus 77 ~~~~~~~~~l~ 87 (408)
..++.++..|.
T Consensus 96 k~l~~eL~~L~ 106 (169)
T PF07106_consen 96 KSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHh
Confidence 33333333333
No 432
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=24.55 E-value=2.7e+02 Score=24.07 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHH
Q 041050 32 HMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDET 73 (408)
Q Consensus 32 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (408)
..++.++++++.+++.+. ...++.+.+.+.++++.+|+-+
T Consensus 47 ~~yknyk~ki~eLke~lK--~~~NAEleekll~lq~lfq~Kl 86 (160)
T PF03978_consen 47 EAYKNYKKKINELKEDLK--DVSNAELEEKLLKLQKLFQDKL 86 (160)
T ss_pred HHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHH
Confidence 477889999999999986 3334455666666666666544
No 433
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=24.12 E-value=6.6e+02 Score=26.10 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 277 CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 277 ~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
..+...+..+=.+|+.|+. ..+.. ..-+.+.+.+|..-|..+.++++..+-.||..|+..
T Consensus 385 ~~~~~lR~~aYe~lG~L~~-----------------~~p~l--~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 385 SEDIELRSLAYETLGLLAK-----------------RAPSL--FSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred cccHHHHHHHHHHHHHHHc-----------------cCccc--ccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 3466778888899999986 34432 112457889999999888999999999999998864
No 434
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=24.04 E-value=3e+02 Score=29.14 Aligned_cols=74 Identities=22% Similarity=0.346 Sum_probs=48.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHH---HHHHHHhhhHHHHHHHHhhh
Q 041050 17 AEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLE---DETLQKRKLEEEIVILRSQL 90 (408)
Q Consensus 17 ~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l 90 (408)
.+.|..+-.++|.|...++..++.+..+...+.+....+..+..|+..+...|. ++.....++++.+..+....
T Consensus 284 ~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~ 360 (560)
T PF06160_consen 284 EERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRY 360 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777777777777777777777777777777665 34444444444444444443
No 435
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.98 E-value=5.1e+02 Score=22.89 Aligned_cols=14 Identities=36% Similarity=0.413 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHh
Q 041050 35 KTAEEELNKLKSRL 48 (408)
Q Consensus 35 ~~~~~e~~~~~~~~ 48 (408)
..+++++...+++.
T Consensus 128 ~~~~~~~~~~~kq~ 141 (192)
T PF05529_consen 128 IKLEEKLEALKKQA 141 (192)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555554
No 436
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=23.94 E-value=5.9e+02 Score=27.87 Aligned_cols=17 Identities=53% Similarity=0.706 Sum_probs=10.5
Q ss_pred hhhHHHHHHHHhhhhhh
Q 041050 77 RKLEEEIVILRSQLLQL 93 (408)
Q Consensus 77 ~~~~~~~~~l~~~l~~~ 93 (408)
..+++++..|++++.+.
T Consensus 131 ~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 131 KRLEEEIELLNSQLEEA 147 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666666666554
No 437
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=23.89 E-value=1.6e+02 Score=21.63 Aligned_cols=11 Identities=45% Similarity=0.561 Sum_probs=4.4
Q ss_pred HhhhHHHHHHH
Q 041050 76 KRKLEEEIVIL 86 (408)
Q Consensus 76 ~~~~~~~~~~l 86 (408)
...+..++..+
T Consensus 40 ~~~L~~ei~~l 50 (80)
T PF04977_consen 40 NEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHh
Confidence 33344444444
No 438
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=23.79 E-value=6.9e+02 Score=24.64 Aligned_cols=87 Identities=22% Similarity=0.206 Sum_probs=56.6
Q ss_pred CCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhh-------cccc----cchhHhhHHHHHhHHHHHHHHhhhH
Q 041050 12 PGASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQY-------TESG----SCRDAEMSKLHKTLEDETLQKRKLE 80 (408)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (408)
|+--..+..+.|+.+-|+....--++|..-.++-+.++.. ..+. .-+.+|-+.++..++.+..++..+|
T Consensus 87 pl~iL~~mM~qcKnmQe~~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E 166 (561)
T KOG1103|consen 87 PLDILDKMMAQCKNMQENAASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAE 166 (561)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333456677788888887777777777766666665421 1111 1346667778888888888888888
Q ss_pred HHHHHHHhhhhhhhHHHH
Q 041050 81 EEIVILRSQLLQLTFEAD 98 (408)
Q Consensus 81 ~~~~~l~~~l~~~~~~~~ 98 (408)
.+-..|..+|.+-.....
T Consensus 167 ~~k~Kl~~qLeeEk~RHe 184 (561)
T KOG1103|consen 167 IAKDKLEMQLEEEKKRHE 184 (561)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 877788777766543333
No 439
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=23.68 E-value=8.2e+02 Score=26.15 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=33.9
Q ss_pred CCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q 041050 13 GASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQ 50 (408)
Q Consensus 13 ~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~ 50 (408)
+.+..+++..+|+-+++--++-..+|.|+..|+.|+..
T Consensus 230 ~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~ 267 (629)
T KOG0963|consen 230 VAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAK 267 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567899999999999999999999999999999863
No 440
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=23.49 E-value=2.1e+02 Score=24.23 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=25.9
Q ss_pred HHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050 262 LRSEGGIRALLGMVRCGHPDVLSQVARGIANFA 294 (408)
Q Consensus 262 i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~ 294 (408)
......-..+..+|.++|+++|+.|..||...-
T Consensus 13 ~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k 45 (141)
T PF07539_consen 13 YRSDELYDALLRLLSSRDPEVQKLALDCLLTWK 45 (141)
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 334445566788999999999999999998763
No 441
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=23.44 E-value=3.5e+02 Score=25.71 Aligned_cols=59 Identities=17% Similarity=0.271 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhhhhcccccch-------hHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhh
Q 041050 35 KTAEEELNKLKSRLGQYTESGSCR-------DAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQL 93 (408)
Q Consensus 35 ~~~~~e~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 93 (408)
+...+++..+++++..+..+.+++ +.|++..+|+|+.+..-|...-+|...+...|.++
T Consensus 172 ~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 172 KAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 445666666666666555554443 45666688888888777766666666555555444
No 442
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=23.35 E-value=6.1e+02 Score=23.64 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHhh
Q 041050 34 RKTAEEELNKLKSRLG 49 (408)
Q Consensus 34 ~~~~~~e~~~~~~~~~ 49 (408)
....+.++..++.+..
T Consensus 47 ~~~~~~e~e~le~qv~ 62 (239)
T COG1579 47 LEALEIELEDLENQVS 62 (239)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 443
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=23.29 E-value=3.5e+02 Score=24.05 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=17.3
Q ss_pred HHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHh
Q 041050 18 EDIAEIRKLLQNEIHMR-------KTAEEELNKLKSRL 48 (408)
Q Consensus 18 ~~~~~~~~~~~~e~~~~-------~~~~~e~~~~~~~~ 48 (408)
..+-..|+++|.-+... +..|.+...++..+
T Consensus 115 ~~v~~~~~~v~~ml~~~~~~~~k~D~~eA~~t~lk~~~ 152 (192)
T COG5374 115 IVVMRVMSIVEEMLEENAKKGGKIDKMEADSTDLKARL 152 (192)
T ss_pred HHHHHHHHHHHHHHHHhhhcccchhhhhcchHHHHHHH
Confidence 34455677777666666 45555555444443
No 444
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=22.84 E-value=2.2e+02 Score=21.11 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=20.9
Q ss_pred HHHhHHH-HHHHHHHHHHHHHHHHHhhhhccccc
Q 041050 24 RKLLQNE-IHMRKTAEEELNKLKSRLGQYTESGS 56 (408)
Q Consensus 24 ~~~~~~e-~~~~~~~~~e~~~~~~~~~~~~~~~~ 56 (408)
+.-|+.. .++.+.|++..+.++..++.-...++
T Consensus 12 le~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a 45 (70)
T PF04899_consen 12 LEELQQSYEKQQQEWQSSYADLQHMFEQTSQENA 45 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3344444 45568888888888888775444444
No 445
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.62 E-value=3.1e+02 Score=28.82 Aligned_cols=49 Identities=29% Similarity=0.310 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhh
Q 041050 34 RKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQL 93 (408)
Q Consensus 34 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 93 (408)
|..+|||--.++++++.+..+ +=-|+++...-..+++++.+|++++.+.
T Consensus 172 YSELEEENIsLQKqVs~LR~s-----------QVEyEglkheikRleEe~elln~q~ee~ 220 (772)
T KOG0999|consen 172 YSELEEENISLQKQVSNLRQS-----------QVEYEGLKHEIKRLEEETELLNSQLEEA 220 (772)
T ss_pred HHHHHHhcchHHHHHHHHhhh-----------hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555543322 1234455555667777777777776655
No 446
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.40 E-value=1.9e+02 Score=25.74 Aligned_cols=30 Identities=37% Similarity=0.358 Sum_probs=16.0
Q ss_pred cchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhh
Q 041050 56 SCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQ 92 (408)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 92 (408)
+..++|+.++++.+.. .+.++..|+.|...
T Consensus 157 ~~~~~ei~~lk~el~~-------~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEK-------KEKEIEALKKQSEG 186 (192)
T ss_pred hhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 3445666666666655 44445555555433
No 447
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=22.31 E-value=6.4e+02 Score=23.46 Aligned_cols=33 Identities=27% Similarity=0.179 Sum_probs=21.8
Q ss_pred hCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccC
Q 041050 180 AGGLSSLLMLLRSFEDETIRRVAAGAIANLAMN 212 (408)
Q Consensus 180 ~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~ 212 (408)
.|-+|.++..|.....-++...+-++.+.++..
T Consensus 197 ~n~~p~~l~~l~~~~~~~Is~~~~lt~~~~~c~ 229 (292)
T KOG4005|consen 197 CNPLPTLLDMLGVDEEFDISRLEELTESLLACI 229 (292)
T ss_pred cCCcHHHHHHHccchhhhHHHHHHHHHHHHHHh
Confidence 455888888887655556666666666655443
No 448
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=22.29 E-value=2.7e+02 Score=22.50 Aligned_cols=36 Identities=31% Similarity=0.366 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHH
Q 041050 36 TAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLED 71 (408)
Q Consensus 36 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (408)
.+-+++..+|+++.++-.+++.+.-|...+++++..
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444433
No 449
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=22.20 E-value=3e+02 Score=30.04 Aligned_cols=70 Identities=19% Similarity=0.182 Sum_probs=46.3
Q ss_pred HHHHHHHHcCC-CCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 041050 183 LSSLLMLLRSF-EDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC 253 (408)
Q Consensus 183 i~~L~~lL~~~-~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~ 253 (408)
+..++..+.++ .+...+-..+--|+.=|.. |.+|..+.+.|++...++.|.++.+-+....+..+|..|-
T Consensus 334 ~~yiLStlq~~~~~m~trCLSaISla~Kc~~-p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMylL 404 (865)
T KOG2152|consen 334 LEYILSTLQSALLPMETRCLSAISLADKCVM-PDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYLL 404 (865)
T ss_pred HHHHHhhhhhccccHHHHHHhhhhhhhhccC-hHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHHH
Confidence 45556666543 3344443333334444566 9999999999999999999887766666655656666654
No 450
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=22.05 E-value=3.5e+02 Score=24.95 Aligned_cols=54 Identities=20% Similarity=0.293 Sum_probs=37.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHH
Q 041050 18 EDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLED 71 (408)
Q Consensus 18 ~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (408)
.....+.+.++....+.+.++.++..+++.+..+....+....-+.....+|..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~ 68 (237)
T PF00261_consen 15 ERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEE 68 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 455677888888899999999999999999876655555444434444444443
No 451
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=21.93 E-value=4e+02 Score=28.09 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=22.3
Q ss_pred ccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhh
Q 041050 53 ESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQL 90 (408)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 90 (408)
.++.-+..++..+++.+++|+..|.-++.-++.|...+
T Consensus 176 ~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel 213 (546)
T KOG0977|consen 176 AENSRLREELARARKQLDDETLLRVDLQNRVQTLLEEL 213 (546)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33445666777777777777766654444444444433
No 452
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=21.82 E-value=3e+02 Score=19.53 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=30.5
Q ss_pred HHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 041050 206 IANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANL 252 (408)
Q Consensus 206 L~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL 252 (408)
|.-||.. ...|+.+.+.|+-+.+-.+=...+||.+....-..+.-|
T Consensus 2 LllL~~T-~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iL 47 (58)
T PF04064_consen 2 LLLLCAT-REGREYLREKGVYPILRELHKWEEDEEVQEACERLVQIL 47 (58)
T ss_pred HhHHhcc-HHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 5667777 889999999988776655533445677775554444333
No 453
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=21.77 E-value=4.9e+02 Score=21.92 Aligned_cols=72 Identities=11% Similarity=0.035 Sum_probs=48.4
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHH-HHHhccC---CCHHH
Q 041050 267 GIRALLGMVR-CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPW-IVQNANN---EAAPI 341 (408)
Q Consensus 267 ~l~~L~~lL~-~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~-Lv~lL~~---~~~~v 341 (408)
++.+|-..+. +.++.++..|+..|-.+..+ ........+...+.+.. |+.++.. .+..|
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkN----------------CG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~V 102 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKN----------------CGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIV 102 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHH----------------ccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHH
Confidence 4566777775 46888888887777776651 22334455566678886 8888863 24578
Q ss_pred HHHHHHHHHHHcc
Q 041050 342 RRHIELALCHLAQ 354 (408)
Q Consensus 342 ~~~a~~aL~~La~ 354 (408)
+..+...+...+.
T Consensus 103 k~kil~li~~W~~ 115 (141)
T cd03565 103 QEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777664
No 454
>PRK09039 hypothetical protein; Validated
Probab=21.55 E-value=4.6e+02 Score=25.81 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=16.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhH
Q 041050 25 KLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTL 69 (408)
Q Consensus 25 ~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (408)
.-|..+...+....-+|..|+.+++.+....+.++.++..++++.
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333
No 455
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=21.27 E-value=7.4e+02 Score=25.63 Aligned_cols=90 Identities=14% Similarity=0.088 Sum_probs=52.0
Q ss_pred HHHHhcccHHHHHHhhc-CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC-C
Q 041050 260 MKLRSEGGIRALLGMVR-CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN-E 337 (408)
Q Consensus 260 ~~i~~~g~l~~L~~lL~-~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~ 337 (408)
+-+.+.+.++.|+.+|. ..+++++..|+..|..+.....+...+. -.-.|....-..+.....+..|+..+-. .
T Consensus 56 ewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~----~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~ 131 (475)
T PF04499_consen 56 EWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNE----QSSIGPNPLTRQLVSEETVEKLLDIMLNSQ 131 (475)
T ss_pred HHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccc----ccCCCccHHHHHHhChHHHHHHHHHHhcCC
Confidence 34456899999999996 5678899999988888875322221110 0011334455556666677777665542 2
Q ss_pred CHHHHHHHHHHHHHHc
Q 041050 338 AAPIRRHIELALCHLA 353 (408)
Q Consensus 338 ~~~v~~~a~~aL~~La 353 (408)
......+++.++..|-
T Consensus 132 ~~s~lvn~v~IlieLI 147 (475)
T PF04499_consen 132 GGSSLVNGVSILIELI 147 (475)
T ss_pred CcchHHHHHHHHHHHH
Confidence 2334444444444443
No 456
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=21.22 E-value=6.5e+02 Score=23.16 Aligned_cols=129 Identities=12% Similarity=0.095 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCC------------C-----HHHHHHHHHHHHHhccCChhh
Q 041050 154 ANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFE------------D-----ETIRRVAAGAIANLAMNAEAN 216 (408)
Q Consensus 154 ~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~------------~-----~~v~~~A~~aL~nLa~~~~~~ 216 (408)
..--..++..+..|...++....+.+.+.++.+.+.|...+ + .++...=...|+-++.+ +..
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~-~~G 156 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSST-PNG 156 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCC-hhH
Confidence 44456677777777777777777777777787777775320 0 12222233567888988 888
Q ss_pred HHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHH-HHHhhcCCCHHHHHHHHHHHHHhh
Q 041050 217 QELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRA-LLGMVRCGHPDVLSQVARGIANFA 294 (408)
Q Consensus 217 ~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~-L~~lL~~~~~~v~~~a~~aL~nL~ 294 (408)
...+-+.+....+..+....+.+.+... ++.+|=.+. .|.... |-..|.+++..++..|..-|..+.
T Consensus 157 l~lLe~~~if~~l~~i~~~~~~~~l~kl---il~~LDY~~--------~~~~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 157 LKLLERWNIFTMLYHIFSLSSRDDLLKL---ILSSLDYSV--------DGHPRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHCCHHHHHHHHHccCchHHHHHH---HHhhCCCCC--------ccHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 9888899999998888755444444433 455542111 222333 334667888899999998888775
No 457
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=21.20 E-value=2.2e+02 Score=20.47 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=12.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhh
Q 041050 25 KLLQNEIHMRKTAEEELNKLKSRLG 49 (408)
Q Consensus 25 ~~~~~e~~~~~~~~~e~~~~~~~~~ 49 (408)
+.|++.-++...++.+|..|++.++
T Consensus 32 ~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 32 SKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555544
No 458
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=21.09 E-value=5.3e+02 Score=26.69 Aligned_cols=11 Identities=18% Similarity=0.105 Sum_probs=4.5
Q ss_pred HHHHHHHHHcc
Q 041050 344 HIELALCHLAQ 354 (408)
Q Consensus 344 ~a~~aL~~La~ 354 (408)
.|..=+.+++.
T Consensus 422 ~Ay~eFf~~a~ 432 (508)
T PF00901_consen 422 EAYSEFFNLAA 432 (508)
T ss_pred HHHHHHHHHHh
Confidence 34444444443
No 459
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=20.90 E-value=6.4e+02 Score=29.35 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=20.1
Q ss_pred chhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 041050 57 CRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLT 94 (408)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 94 (408)
....++.++...++........+++++..+...+....
T Consensus 443 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1163)
T COG1196 443 ELNEELEELEEQLEELRDRLKELERELAELQEELQRLE 480 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555544443
No 460
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=20.80 E-value=7.8e+02 Score=23.86 Aligned_cols=125 Identities=16% Similarity=0.203 Sum_probs=82.2
Q ss_pred HHHHHhcCcHHHHHHHhhc----------------------CCCHHHHHHHHHHHHHHhCCchhHHHHH-----------
Q 041050 217 QELIMAQGGISLLSTTAAD----------------------AEDPQTLRMVAGAIANLCGNDKLQMKLR----------- 263 (408)
Q Consensus 217 ~~~i~~~g~i~~Lv~lL~~----------------------~~~~~v~~~a~~aL~nL~~~~~~~~~i~----------- 263 (408)
|..+.+.|-||.|-.+... +++..++.+-++.+.++|..+.+...+.
T Consensus 2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence 5677888888888766531 1222478888999999995332221111
Q ss_pred -----------hcccHHHHHHhhc--CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChh--hHHHHHhcCcHH
Q 041050 264 -----------SEGGIRALLGMVR--CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKS--GRSLLIEDGALP 328 (408)
Q Consensus 264 -----------~~g~l~~L~~lL~--~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~--~~~~i~~~g~l~ 328 (408)
+.|.+..++..+. ..+...+-.-++|+-.+.+ |.+. -+.-+.+.|.++
T Consensus 82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLR-----------------g~t~~~~Q~fl~~~GLLe 144 (303)
T PF12463_consen 82 LNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLR-----------------GATSYADQAFLAERGLLE 144 (303)
T ss_pred ccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHc-----------------CCCcHHHHHHHHhcchHH
Confidence 2345666666553 2345567777788888876 4444 344567899999
Q ss_pred HHHHhccCC---CHHHHHHHHHHHHHHccCchh
Q 041050 329 WIVQNANNE---AAPIRRHIELALCHLAQHEVN 358 (408)
Q Consensus 329 ~Lv~lL~~~---~~~v~~~a~~aL~~La~~~~~ 358 (408)
.++..+-++ +..+.....-.|+.|......
T Consensus 145 ~lv~eil~~~~~~~~v~Q~~FDLLGELiK~n~~ 177 (303)
T PF12463_consen 145 HLVSEILSDGCMSQEVLQSNFDLLGELIKFNRD 177 (303)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHHHHCCCHH
Confidence 999866543 456888888999999887433
No 461
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.50 E-value=1.5e+03 Score=27.22 Aligned_cols=200 Identities=14% Similarity=0.047 Sum_probs=115.4
Q ss_pred HHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhH-HHHHHhCCHHHHHHHHcCC---CCHHHH---HHHHHHHH
Q 041050 135 KLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQ-EKIVEAGGLSSLLMLLRSF---EDETIR---RVAAGAIA 207 (408)
Q Consensus 135 ~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~i~~L~~lL~~~---~~~~v~---~~A~~aL~ 207 (408)
..++.|-...+..-+++.++.+|..|.+++.-.-..-++. ++.-+.-++-.++.+.... +++.+- ..-..-..
T Consensus 1434 ~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~A~~~ 1513 (1758)
T KOG1791|consen 1434 IFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFIAFFS 1513 (1758)
T ss_pred hhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHHHHHH
Confidence 5666677777788889999999999988887655444443 4444444555666555422 222221 11112223
Q ss_pred HhccCChh--h---------HHHHHhcCcHHHHHHHhhcCC--CHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHh
Q 041050 208 NLAMNAEA--N---------QELIMAQGGISLLSTTAADAE--DPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGM 274 (408)
Q Consensus 208 nLa~~~~~--~---------~~~i~~~g~i~~Lv~lL~~~~--~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~l 274 (408)
+++.+ |. . ...+++-.|+|.+-..+.++. ....+....+.+...-.++...+.....++...+++.
T Consensus 1514 ~ill~-Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~~~lsf 1592 (1758)
T KOG1791|consen 1514 DILLV-PSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFETLLSF 1592 (1758)
T ss_pred HHHcC-CccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCchhhhHHhhcCcceEeehh
Confidence 44444 31 1 135667778887766664321 2234555555555555666666777777888878877
Q ss_pred hcCCCHH--HHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhh-HHHHHhcCcHHHHHHhccCC--CHHHHHH-HHHH
Q 041050 275 VRCGHPD--VLSQVARGIANFAKCESRAATQVRFIRCTATGVKSG-RSLLIEDGALPWIVQNANNE--AAPIRRH-IELA 348 (408)
Q Consensus 275 L~~~~~~--v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~-~~~i~~~g~l~~Lv~lL~~~--~~~v~~~-a~~a 348 (408)
..++-.+ .+.-...+|.+-. ..+.. ...+...|+..|+...++++ .+-.+.. ...+
T Consensus 1593 ~sS~l~~~~S~~LIL~~L~~~V------------------k~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v 1654 (1758)
T KOG1791|consen 1593 YSSPLASEESKRLILATLQKGV------------------KFPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISV 1654 (1758)
T ss_pred hcchhHHHHHHHHHHHHHHhcC------------------CCcHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHH
Confidence 7665322 2233444444433 23333 34445789999999999886 4444444 3344
Q ss_pred HHHHc
Q 041050 349 LCHLA 353 (408)
Q Consensus 349 L~~La 353 (408)
+.++=
T Consensus 1655 ~~~l~ 1659 (1758)
T KOG1791|consen 1655 LKVLW 1659 (1758)
T ss_pred HHHHH
Confidence 44443
No 462
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=20.44 E-value=4.7e+02 Score=24.25 Aligned_cols=12 Identities=8% Similarity=0.218 Sum_probs=5.2
Q ss_pred hHhhHHHHHhHH
Q 041050 59 DAEMSKLHKTLE 70 (408)
Q Consensus 59 ~~~~~~~~~~~~ 70 (408)
-+|+.--++++|
T Consensus 154 mkei~tY~~~fQ 165 (265)
T PF06409_consen 154 MKEIHTYKQMFQ 165 (265)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 463
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=20.36 E-value=7.8e+02 Score=30.38 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=19.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 041050 18 EDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTE 53 (408)
Q Consensus 18 ~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~ 53 (408)
+++..+.+.+++.-..+.+|+.|.+.+..++..+..
T Consensus 936 ~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~ 971 (1930)
T KOG0161|consen 936 QEVQELKEQLEELELTLQKLELEKNAAENKLKNLEE 971 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555544333
No 464
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=20.27 E-value=2.4e+02 Score=23.00 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=34.8
Q ss_pred chhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhhHHHHHHHhhhh
Q 041050 57 CRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLTFEADQMQKCLE 105 (408)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~ 105 (408)
....+++..++.++.+...+..++.++..|+.. ...-++++|..+-
T Consensus 54 ~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg---~~~i~e~AR~~l~ 99 (117)
T COG2919 54 QLQRQIAAQQAELEKLSARNTALEAEIKDLKDG---RDYIEERARSELG 99 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHhC
Confidence 445667788999999999999999999999988 3344455665443
No 465
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=20.13 E-value=3.7e+02 Score=19.95 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=24.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHH
Q 041050 23 IRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILR 87 (408)
Q Consensus 23 ~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (408)
|-..+..=+-+...++.|+..+|..... +..+..++....+.+...+....+=+.+|.
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~-------L~~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNE-------LKEENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444445554444444332 333444444444444444444444444443
No 466
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=20.13 E-value=7e+02 Score=23.70 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=7.4
Q ss_pred HHhhhhhhhHHHHHHHh
Q 041050 86 LRSQLLQLTFEADQMQK 102 (408)
Q Consensus 86 l~~~l~~~~~~~~~~r~ 102 (408)
+...|.++..+.+++.+
T Consensus 233 ~~~rl~~l~~~~~~l~k 249 (269)
T PF05278_consen 233 MKGRLGELEMESTRLSK 249 (269)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 467
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=20.09 E-value=6.3e+02 Score=22.57 Aligned_cols=74 Identities=20% Similarity=0.244 Sum_probs=0.0
Q ss_pred chHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhh
Q 041050 16 AAEDIAEIRKLLQNEIHMR----KTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQ 89 (408)
Q Consensus 16 ~~~~~~~~~~~~~~e~~~~----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (408)
.......-++-+|.++.++ ...++++..+...+.+++...+...++.+...+........=..+.+++..+...
T Consensus 104 ~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 104 DQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 468
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.04 E-value=4.1e+02 Score=26.98 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=27.9
Q ss_pred chhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhhHH
Q 041050 57 CRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLTFE 96 (408)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 96 (408)
.+..+..++++++.....+...+++.+..+...++-+..+
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~ 109 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHD 109 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 4556666777777777777777777777777777766543
Done!