Query 041050
Match_columns 408
No_of_seqs 240 out of 1451
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 04:53:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041050.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041050hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 100.0 1.2E-30 4.2E-35 268.5 30.6 290 76-405 56-401 (510)
2 3nmw_A APC variant protein; AR 100.0 7.9E-31 2.7E-35 257.4 22.9 258 118-391 51-329 (354)
3 3tpo_A Importin subunit alpha- 100.0 2.6E-29 8.8E-34 259.8 31.4 291 76-406 75-421 (529)
4 3nmz_A APC variant protein; pr 100.0 7.2E-30 2.4E-34 258.0 23.2 257 119-391 168-445 (458)
5 1xm9_A Plakophilin 1; armadill 100.0 8.9E-28 3E-32 244.0 29.4 280 123-405 26-419 (457)
6 4hxt_A De novo protein OR329; 100.0 1.7E-27 6E-32 220.2 28.2 235 140-394 2-239 (252)
7 3l6x_A Catenin delta-1; cateni 100.0 1.8E-27 6E-32 246.1 27.5 280 124-406 73-446 (584)
8 3tpo_A Importin subunit alpha- 100.0 5.1E-27 1.7E-31 242.6 27.8 255 120-393 141-446 (529)
9 3nmw_A APC variant protein; AR 100.0 2.4E-27 8.1E-32 232.6 23.0 221 121-358 106-338 (354)
10 4db8_A Armadillo-repeat protei 100.0 7E-27 2.4E-31 217.2 24.4 234 141-394 13-249 (252)
11 3ul1_B Importin subunit alpha- 100.0 6.2E-27 2.1E-31 240.9 26.3 253 121-392 123-426 (510)
12 4b8j_A Importin subunit alpha- 100.0 6.8E-26 2.3E-30 233.4 31.8 246 130-393 107-355 (528)
13 3now_A UNC-45 protein, SD10334 100.0 1.2E-26 4.2E-31 247.3 26.1 252 134-406 489-751 (810)
14 3nmz_A APC variant protein; pr 99.9 1.3E-26 4.4E-31 234.3 23.2 268 121-406 104-422 (458)
15 1xm9_A Plakophilin 1; armadill 99.9 6.6E-26 2.3E-30 230.2 28.5 260 141-403 3-370 (457)
16 3now_A UNC-45 protein, SD10334 99.9 6.1E-27 2.1E-31 249.6 20.9 259 119-395 515-781 (810)
17 4db8_A Armadillo-repeat protei 99.9 6.8E-26 2.3E-30 210.5 24.0 207 129-355 43-252 (252)
18 4db6_A Armadillo repeat protei 99.9 2E-25 6.9E-30 201.8 25.0 201 136-355 8-210 (210)
19 3l6x_A Catenin delta-1; cateni 99.9 3.3E-25 1.1E-29 229.1 27.5 269 120-408 111-491 (584)
20 4hxt_A De novo protein OR329; 99.9 5.6E-25 1.9E-29 203.3 26.4 216 122-356 25-243 (252)
21 3tt9_A Plakophilin-2; cell adh 99.9 1.4E-25 4.8E-30 206.7 19.2 196 141-355 9-230 (233)
22 1wa5_B Importin alpha subunit; 99.9 7.2E-24 2.5E-28 218.5 33.7 244 130-393 120-367 (530)
23 4b8j_A Importin subunit alpha- 99.9 3E-24 1E-28 221.1 28.3 309 77-405 74-414 (528)
24 1xqr_A HSPBP1 protein; armadil 99.9 1.8E-24 6.3E-29 206.9 24.6 236 142-395 30-286 (296)
25 1jdh_A Beta-catenin; beta-cate 99.9 1.5E-23 5E-28 214.9 30.2 284 121-405 82-397 (529)
26 2jdq_A Importin alpha-1 subuni 99.9 4.3E-23 1.5E-27 206.9 31.8 243 130-392 53-301 (450)
27 2jdq_A Importin alpha-1 subuni 99.9 8.8E-23 3E-27 204.7 32.9 252 121-392 87-343 (450)
28 1jdh_A Beta-catenin; beta-cate 99.9 8.3E-24 2.9E-28 216.7 24.7 252 140-392 266-526 (529)
29 1wa5_B Importin alpha subunit; 99.9 7.3E-23 2.5E-27 211.0 29.8 251 122-392 154-408 (530)
30 2z6h_A Catenin beta-1, beta-ca 99.9 6.1E-23 2.1E-27 216.8 28.6 283 122-405 80-394 (644)
31 4db6_A Armadillo repeat protei 99.9 7.8E-23 2.7E-27 184.7 23.5 194 179-392 10-205 (210)
32 2z6h_A Catenin beta-1, beta-ca 99.9 8.9E-23 3E-27 215.5 24.5 249 142-391 265-522 (644)
33 1xqr_A HSPBP1 protein; armadil 99.9 1.6E-22 5.4E-27 193.5 21.3 173 122-295 63-238 (296)
34 2z6g_A B-catenin; FULL-length, 99.9 3.1E-22 1.1E-26 215.8 23.4 252 141-393 400-660 (780)
35 2z6g_A B-catenin; FULL-length, 99.9 2.8E-21 9.6E-26 208.4 28.6 285 120-405 214-530 (780)
36 3tt9_A Plakophilin-2; cell adh 99.9 6.2E-22 2.1E-26 182.4 14.3 165 129-295 41-229 (233)
37 3opb_A SWI5-dependent HO expre 99.8 2.6E-20 9.1E-25 195.6 17.7 235 132-384 449-716 (778)
38 3opb_A SWI5-dependent HO expre 99.8 1E-18 3.5E-23 183.6 18.0 252 123-394 358-681 (778)
39 3grl_A General vesicular trans 99.6 2.1E-14 7.1E-19 147.6 20.7 246 138-395 120-393 (651)
40 3grl_A General vesicular trans 99.6 1.7E-12 5.9E-17 133.4 27.8 253 133-404 53-354 (651)
41 3ltm_A Alpha-REP4; protein eng 99.4 1.7E-11 5.7E-16 110.3 21.3 186 139-396 18-203 (211)
42 3ltj_A Alpharep-4; protein eng 99.4 1.3E-11 4.5E-16 110.1 19.2 184 139-394 13-196 (201)
43 1oyz_A Hypothetical protein YI 99.4 5.4E-11 1.8E-15 111.7 23.5 138 135-294 18-156 (280)
44 4gmo_A Putative uncharacterize 99.3 2.4E-11 8E-16 129.0 15.7 198 137-353 31-257 (684)
45 1oyz_A Hypothetical protein YI 99.3 2.1E-10 7.1E-15 107.7 17.7 166 141-353 55-220 (280)
46 3ltm_A Alpha-REP4; protein eng 99.2 2.4E-10 8.3E-15 102.6 16.1 157 140-357 50-206 (211)
47 3ltj_A Alpharep-4; protein eng 99.2 4.7E-10 1.6E-14 99.9 16.7 154 140-354 45-198 (201)
48 4gmo_A Putative uncharacterize 99.1 3.5E-10 1.2E-14 120.0 11.7 169 181-368 34-229 (684)
49 4fdd_A Transportin-1; heat rep 98.8 6.8E-08 2.3E-12 104.7 16.9 228 142-395 176-428 (852)
50 2vgl_B AP-2 complex subunit be 98.8 5.1E-08 1.7E-12 101.6 14.0 214 142-391 88-306 (591)
51 2vgl_B AP-2 complex subunit be 98.8 3.3E-07 1.1E-11 95.5 20.0 227 142-379 123-403 (591)
52 4fdd_A Transportin-1; heat rep 98.7 9.5E-08 3.3E-12 103.5 15.2 220 141-382 216-499 (852)
53 1b3u_A Protein (protein phosph 98.6 3E-06 1E-10 86.9 21.4 206 142-378 128-336 (588)
54 1b3u_A Protein (protein phosph 98.6 1.3E-06 4.4E-11 89.6 17.6 220 141-392 364-583 (588)
55 2db0_A 253AA long hypothetical 98.5 3.5E-05 1.2E-09 66.8 21.3 187 139-363 31-219 (253)
56 1ibr_B P95, importin beta-1 su 98.5 1.2E-06 4E-11 87.1 14.4 228 141-393 173-434 (462)
57 1te4_A Conserved protein MTH18 98.5 1.3E-08 4.5E-13 84.5 -0.4 120 180-351 11-130 (131)
58 1w63_A Adapter-related protein 98.5 5.1E-06 1.7E-10 86.9 19.2 219 142-380 144-399 (618)
59 1te4_A Conserved protein MTH18 98.5 1.7E-08 5.8E-13 83.9 -0.4 120 139-292 11-130 (131)
60 1w63_A Adapter-related protein 98.4 3.1E-06 1.1E-10 88.6 15.8 230 142-391 109-374 (618)
61 1ibr_B P95, importin beta-1 su 98.3 2.8E-06 9.6E-11 84.3 12.3 190 142-355 219-438 (462)
62 1ho8_A Vacuolar ATP synthase s 98.3 2.7E-05 9.1E-10 77.6 18.4 208 145-354 172-476 (480)
63 2qk2_A LP04448P; mini spindles 98.3 3.9E-06 1.3E-10 76.8 11.2 183 144-355 19-206 (242)
64 1qgr_A Protein (importin beta 98.2 1.6E-05 5.3E-10 85.6 15.1 223 142-391 219-474 (876)
65 1qgr_A Protein (importin beta 98.2 4.6E-05 1.6E-09 82.0 18.6 226 142-392 174-433 (876)
66 2bpt_A Importin beta-1 subunit 98.1 0.00014 4.8E-09 78.0 20.8 223 142-391 226-477 (861)
67 4ady_A RPN2, 26S proteasome re 98.1 9.2E-05 3.1E-09 79.8 17.8 178 142-358 474-680 (963)
68 4ady_A RPN2, 26S proteasome re 98.1 0.0004 1.4E-08 74.9 22.2 189 153-388 450-668 (963)
69 1u6g_C TIP120 protein, CAND1; 98.0 1.8E-05 6.2E-10 89.0 12.1 219 141-391 49-279 (1230)
70 3b2a_A TON_1937, putative unch 98.0 0.00045 1.5E-08 62.2 18.4 185 141-356 34-220 (265)
71 2bpt_A Importin beta-1 subunit 98.0 0.00021 7.1E-09 76.7 18.3 225 142-392 181-436 (861)
72 3dad_A FH1/FH2 domain-containi 97.9 0.0012 4.1E-08 62.8 19.7 185 142-344 120-326 (339)
73 2qk2_A LP04448P; mini spindles 97.8 0.0006 2E-08 62.0 16.4 141 142-295 58-205 (242)
74 1u6g_C TIP120 protein, CAND1; 97.8 5.9E-05 2E-09 84.8 10.8 208 142-378 8-225 (1230)
75 2qk1_A Protein STU2; STU2P, XM 97.8 0.00012 4.3E-09 67.4 11.0 189 145-354 21-220 (249)
76 2vgl_A Adaptor protein complex 97.8 0.0017 5.8E-08 67.8 20.7 104 142-256 113-219 (621)
77 2vgl_A Adaptor protein complex 97.7 0.0034 1.1E-07 65.5 20.9 70 142-215 148-220 (621)
78 3tjz_B Coatomer subunit gamma; 97.7 0.0003 1E-08 68.1 11.9 209 142-390 106-347 (355)
79 3tjz_B Coatomer subunit gamma; 97.6 0.0038 1.3E-07 60.3 18.2 224 142-389 70-309 (355)
80 3dad_A FH1/FH2 domain-containi 97.6 0.0064 2.2E-07 57.8 19.1 181 186-378 123-317 (339)
81 1ho8_A Vacuolar ATP synthase s 97.6 0.00066 2.3E-08 67.6 12.8 142 153-294 241-475 (480)
82 2qk1_A Protein STU2; STU2P, XM 97.5 0.002 6.7E-08 59.3 14.4 150 142-295 62-220 (249)
83 3b2a_A TON_1937, putative unch 97.4 0.0096 3.3E-07 53.6 16.6 146 134-295 69-218 (265)
84 2db0_A 253AA long hypothetical 97.3 0.0087 3E-07 51.9 15.1 136 142-295 109-246 (253)
85 2iw3_A Elongation factor 3A; a 96.5 0.22 7.6E-06 54.2 20.9 243 140-392 54-320 (986)
86 3ebb_A Phospholipase A2-activa 96.3 0.14 4.8E-06 48.2 16.3 181 143-346 106-298 (304)
87 3ebb_A Phospholipase A2-activa 96.2 0.14 4.9E-06 48.2 15.5 189 183-391 105-301 (304)
88 2iw3_A Elongation factor 3A; a 95.4 1.9 6.6E-05 46.9 22.3 190 140-352 95-322 (986)
89 4ffb_C Protein STU2; tubulin f 95.2 0.57 2E-05 43.0 15.6 188 145-355 14-213 (278)
90 1upk_A MO25 protein; transfera 95.1 2.1 7.1E-05 40.5 18.9 223 134-378 72-313 (341)
91 2fv2_A RCD1 required for cell 94.8 0.51 1.7E-05 43.0 13.2 168 119-293 76-266 (268)
92 1upk_A MO25 protein; transfera 94.8 0.99 3.4E-05 42.7 15.6 193 175-388 72-275 (341)
93 2fv2_A RCD1 required for cell 94.7 1.7 5.8E-05 39.6 16.2 136 158-294 74-223 (268)
94 3c2g_A SYS-1 protein; beta-cat 94.2 0.39 1.3E-05 45.7 11.2 127 124-251 268-400 (619)
95 3eg5_B Protein diaphanous homo 93.7 2 6.9E-05 41.6 15.9 156 129-286 99-285 (383)
96 3u0r_A Apoptosis inhibitor 5; 93.6 1.4 4.8E-05 43.7 14.5 98 184-295 32-129 (507)
97 2f31_A Diaphanous protein homo 93.5 1.5 5.1E-05 39.3 13.7 154 131-286 35-219 (233)
98 1lrv_A LRV, leucine-rich repea 93.4 0.063 2.2E-06 49.0 4.4 42 145-204 79-120 (244)
99 1wa5_C Importin alpha RE-expor 93.3 4.1 0.00014 44.2 19.5 183 147-352 462-668 (960)
100 3l9t_A Putative uncharacterize 93.2 1.4 4.7E-05 39.7 12.7 129 147-295 78-207 (240)
101 4ffb_C Protein STU2; tubulin f 93.2 1.2 4.3E-05 40.6 13.1 144 143-295 58-212 (278)
102 4hat_C Exportin-1; heat repeat 92.8 0.69 2.3E-05 50.9 12.2 100 194-295 465-569 (1023)
103 3c2g_A SYS-1 protein; beta-cat 92.4 3.3 0.00011 39.5 14.4 128 206-352 266-401 (619)
104 1wa5_C Importin alpha RE-expor 92.2 7.6 0.00026 42.0 19.6 199 151-377 416-652 (960)
105 3l9t_A Putative uncharacterize 91.9 3 0.0001 37.4 13.2 142 184-363 73-217 (240)
106 2bnx_A Diaphanous protein homo 91.7 3.4 0.00012 40.1 14.5 154 131-286 39-223 (386)
107 3oc3_A Helicase MOT1, MOT1; re 91.6 0.39 1.3E-05 48.8 7.6 202 154-406 242-451 (800)
108 2of3_A ZYG-9; multifunctional 91.1 8 0.00027 35.4 15.6 178 143-355 49-237 (266)
109 4hat_C Exportin-1; heat repeat 90.9 1.6 5.6E-05 47.9 12.6 139 152-295 465-618 (1023)
110 1lrv_A LRV, leucine-rich repea 90.9 0.23 7.8E-06 45.2 4.9 34 171-205 64-97 (244)
111 3ol1_A Vimentin; structural ge 90.5 3.2 0.00011 33.1 10.8 63 17-93 19-81 (119)
112 2f31_A Diaphanous protein homo 90.1 9.9 0.00034 33.8 19.3 158 214-379 34-212 (233)
113 2bnx_A Diaphanous protein homo 89.4 12 0.00042 36.0 16.2 164 170-346 36-224 (386)
114 2x1g_F Cadmus; transport prote 89.2 3.6 0.00012 44.6 13.5 184 152-354 518-722 (971)
115 3swk_A Vimentin; cytoskeleton, 88.3 1.9 6.5E-05 32.3 7.3 61 20-94 2-62 (86)
116 2x19_B Importin-13; nuclear tr 88.2 8 0.00027 41.6 15.5 135 150-295 459-599 (963)
117 2x19_B Importin-13; nuclear tr 88.2 11 0.00037 40.6 16.5 136 193-355 460-600 (963)
118 3m1i_C Exportin-1; heat repeat 88.1 5.8 0.0002 43.5 14.3 134 157-295 430-569 (1049)
119 1lsh_A Lipovitellin (LV-1N, LV 87.8 2.7 9.2E-05 46.4 11.3 163 142-355 393-577 (1056)
120 3eg5_B Protein diaphanous homo 87.5 21 0.00072 34.3 19.8 154 215-376 101-275 (383)
121 3u0r_A Apoptosis inhibitor 5; 86.7 6.1 0.00021 39.2 11.9 89 151-253 39-128 (507)
122 2of3_A ZYG-9; multifunctional 85.9 6.5 0.00022 36.0 11.1 128 236-392 98-232 (266)
123 2x1g_F Cadmus; transport prote 85.1 8.2 0.00028 41.7 13.4 165 155-354 436-615 (971)
124 3u1c_A Tropomyosin alpha-1 cha 84.0 7.4 0.00025 30.0 9.0 55 34-88 39-93 (101)
125 3u59_A Tropomyosin beta chain; 83.8 7.5 0.00026 29.9 9.0 56 34-89 39-94 (101)
126 2eqb_B RAB guanine nucleotide 80.7 14 0.00049 28.1 9.1 69 17-91 25-93 (97)
127 3ol1_A Vimentin; structural ge 80.6 4.4 0.00015 32.3 6.7 30 20-49 50-79 (119)
128 3gjx_A Exportin-1; transport, 79.2 69 0.0024 35.2 17.8 222 142-391 30-270 (1073)
129 1wt6_A Myotonin-protein kinase 79.0 16 0.00055 26.7 8.5 62 19-94 11-72 (81)
130 3oc3_A Helicase MOT1, MOT1; re 78.9 1 3.4E-05 45.9 2.8 129 142-290 301-431 (800)
131 3o0z_A RHO-associated protein 78.1 9.1 0.00031 32.3 8.1 76 19-94 7-82 (168)
132 3m1i_C Exportin-1; heat repeat 77.8 14 0.00048 40.4 12.0 100 152-254 465-569 (1049)
133 3o0z_A RHO-associated protein 77.2 25 0.00086 29.6 10.5 84 22-105 31-114 (168)
134 2w6b_A RHO guanine nucleotide 75.8 13 0.00045 24.9 6.6 48 36-90 7-54 (56)
135 3qml_C Protein SLS1, nucleotid 75.6 31 0.0011 32.1 11.7 147 143-294 25-188 (315)
136 3hnw_A Uncharacterized protein 74.6 13 0.00044 30.4 8.0 35 57-91 93-127 (138)
137 3gae_A Protein DOA1; UFD3, CDC 74.0 11 0.00038 34.1 8.3 102 236-357 101-220 (253)
138 3ibv_A Exportin-T; karyopherin 73.8 73 0.0025 34.6 16.1 216 151-391 19-255 (980)
139 1deb_A APC protein, adenomatou 71.9 1.3 4.3E-05 29.2 1.0 45 8-52 7-51 (54)
140 1lsh_A Lipovitellin (LV-1N, LV 70.6 57 0.002 35.8 14.5 125 145-296 445-577 (1056)
141 2eqb_B RAB guanine nucleotide 67.0 7 0.00024 29.8 4.3 53 35-94 8-60 (97)
142 1ic2_A Tropomyosin alpha chain 67.0 33 0.0011 25.0 8.1 54 36-89 17-70 (81)
143 3bas_A Myosin heavy chain, str 65.6 39 0.0013 25.1 9.1 68 17-91 20-87 (89)
144 2ocy_A RAB guanine nucleotide 64.5 36 0.0012 28.2 8.6 67 19-91 59-125 (154)
145 3gae_A Protein DOA1; UFD3, CDC 64.2 19 0.00065 32.5 7.6 99 193-295 101-217 (253)
146 3swk_A Vimentin; cytoskeleton, 63.9 5.7 0.00019 29.7 3.3 31 20-50 30-60 (86)
147 2xpp_A IWS1, ECU08_0440; trans 63.9 16 0.00055 30.0 6.4 77 313-392 49-132 (145)
148 2fxo_A Myosin heavy chain, car 63.9 54 0.0019 26.1 10.6 78 17-94 19-96 (129)
149 3o2t_A Symplekin; heat repeat, 63.5 1.1E+02 0.0037 29.4 13.6 115 224-353 63-182 (386)
150 4etp_A Kinesin-like protein KA 63.0 7.8 0.00027 37.7 5.1 60 35-94 6-65 (403)
151 3gjx_A Exportin-1; transport, 60.9 62 0.0021 35.6 12.3 109 184-295 480-595 (1073)
152 3hnw_A Uncharacterized protein 60.7 29 0.00099 28.2 7.3 36 38-73 88-123 (138)
153 3u06_A Protein claret segregat 60.4 9.1 0.00031 37.4 5.0 62 33-94 4-65 (412)
154 3ibv_A Exportin-T; karyopherin 56.4 1.6E+02 0.0054 31.9 14.6 147 194-353 205-360 (980)
155 3oja_B Anopheles plasmodium-re 56.3 32 0.0011 34.8 8.6 32 17-48 462-493 (597)
156 3gs3_A Symplekin, LD45768P; he 55.3 1.2E+02 0.004 27.3 13.4 136 198-353 31-172 (257)
157 3nfq_A Transcription factor IW 55.0 31 0.001 29.2 6.7 77 313-392 64-147 (170)
158 3vld_A DNA mismatch repair pro 54.2 83 0.0029 31.2 10.6 111 133-250 109-221 (500)
159 1ic2_A Tropomyosin alpha chain 53.7 36 0.0012 24.8 6.2 52 20-71 22-73 (81)
160 1vsy_5 Proteasome activator BL 53.6 82 0.0028 34.3 11.6 102 142-253 135-244 (997)
161 3g2s_A C-terminal fragment of 53.0 89 0.003 25.6 9.2 69 226-295 50-126 (149)
162 3ldz_A STAM-1, signal transduc 52.3 23 0.00079 28.8 5.5 71 267-354 43-114 (140)
163 1mhq_A ADP-ribosylation factor 51.8 38 0.0013 27.8 6.8 72 267-354 39-116 (148)
164 3zyq_A Hepatocyte growth facto 51.6 16 0.00056 32.3 4.8 83 326-408 46-143 (226)
165 1x5b_A Signal transducing adap 51.1 30 0.001 29.0 6.1 69 142-210 54-124 (163)
166 1x5b_A Signal transducing adap 50.0 34 0.0012 28.6 6.3 72 267-354 53-125 (163)
167 3zyq_A Hepatocyte growth facto 49.6 22 0.00076 31.4 5.4 70 142-211 47-118 (226)
168 2fxo_A Myosin heavy chain, car 48.6 1E+02 0.0034 24.5 9.0 73 21-93 51-123 (129)
169 3pst_A Protein DOA1; protein d 48.6 1.2E+02 0.004 29.6 10.6 138 199-363 243-398 (425)
170 3oja_B Anopheles plasmodium-re 46.0 81 0.0028 31.7 9.7 15 35-49 473-487 (597)
171 3ldz_A STAM-1, signal transduc 45.9 58 0.002 26.3 7.0 69 226-295 44-114 (140)
172 2e7s_A RAB guanine nucleotide 45.9 27 0.00093 28.3 4.7 15 35-49 28-42 (135)
173 2v71_A Nuclear distribution pr 45.7 1.2E+02 0.0042 25.9 9.1 39 35-73 45-83 (189)
174 3l3f_X Protein DOA1, DOA1/UFD3 45.6 79 0.0027 30.1 8.8 131 199-356 180-328 (362)
175 3g2s_A C-terminal fragment of 45.4 51 0.0017 27.1 6.6 72 267-354 49-126 (149)
176 2dfs_A Myosin-5A; myosin-V, in 45.2 58 0.002 35.8 8.8 32 57-88 988-1019(1080)
177 2v66_B Nuclear distribution pr 45.1 1.1E+02 0.0037 23.8 9.2 77 18-94 3-83 (111)
178 2e7s_A RAB guanine nucleotide 45.0 39 0.0013 27.3 5.5 64 31-94 17-80 (135)
179 3u1c_A Tropomyosin alpha-1 cha 44.8 1E+02 0.0034 23.4 8.1 53 35-87 19-71 (101)
180 3gs3_A Symplekin, LD45768P; he 42.3 1.9E+02 0.0065 25.9 12.5 129 154-294 29-172 (257)
181 3pst_A Protein DOA1; protein d 41.8 55 0.0019 31.9 7.1 99 193-295 273-389 (425)
182 4h22_A Leucine-rich repeat fli 41.6 48 0.0016 25.4 5.2 72 16-90 10-81 (103)
183 1mhq_A ADP-ribosylation factor 41.4 1.4E+02 0.0049 24.2 9.2 69 226-295 40-116 (148)
184 3azd_A Short alpha-tropomyosin 40.7 25 0.00087 21.6 3.0 32 59-90 3-34 (37)
185 2wt7_B Transcription factor MA 40.2 21 0.00072 26.8 3.0 37 35-71 51-87 (90)
186 3c3g_A Alpha/beta peptide with 40.2 43 0.0015 19.9 3.7 25 67-91 7-31 (33)
187 1juq_A ADP-ribosylation factor 39.2 56 0.0019 27.5 6.0 73 267-355 51-129 (171)
188 3o2t_A Symplekin; heat repeat, 38.9 2.7E+02 0.0091 26.6 12.5 196 155-362 40-265 (386)
189 3cve_A Homer protein homolog 1 38.6 92 0.0032 22.2 6.0 31 25-55 7-37 (72)
190 3he5_A Synzip1; heterodimeric 38.4 36 0.0012 21.2 3.3 45 22-69 3-47 (49)
191 3a6p_A Exportin-5; exportin-5, 37.5 4.6E+02 0.016 29.0 18.3 123 152-295 25-162 (1204)
192 3c3f_A Alpha/beta peptide with 36.6 53 0.0018 19.6 3.7 25 67-91 8-32 (34)
193 1dvp_A HRS, hepatocyte growth 36.1 39 0.0013 29.6 4.7 69 142-210 44-114 (220)
194 3l3f_X Protein DOA1, DOA1/UFD3 36.0 53 0.0018 31.3 5.9 99 193-295 210-326 (362)
195 2ocy_A RAB guanine nucleotide 34.5 97 0.0033 25.6 6.5 39 56-94 54-92 (154)
196 3qh9_A Liprin-beta-2; coiled-c 33.8 1.1E+02 0.0037 22.3 5.8 17 35-51 22-38 (81)
197 3mq7_A Bone marrow stromal ant 33.3 63 0.0022 25.2 4.8 14 58-71 76-89 (121)
198 1juq_A ADP-ribosylation factor 33.3 66 0.0023 27.0 5.5 70 142-211 52-128 (171)
199 2jee_A YIIU; FTSZ, septum, coi 32.9 1.4E+02 0.0049 21.7 8.8 39 17-55 5-43 (81)
200 2v4h_A NF-kappa-B essential mo 32.6 1.7E+02 0.0059 22.6 8.1 12 78-89 94-105 (110)
201 3s4r_A Vimentin; alpha-helix, 32.3 1.4E+02 0.0049 22.2 6.7 54 35-90 33-86 (93)
202 2dfs_A Myosin-5A; myosin-V, in 30.8 1.7E+02 0.0057 32.2 9.5 6 22-27 932-937 (1080)
203 2xv5_A Lamin-A/C; structural p 30.7 1.1E+02 0.0039 21.8 5.5 32 57-88 23-54 (74)
204 3u59_A Tropomyosin beta chain; 30.5 1.7E+02 0.0059 22.0 9.2 56 35-90 19-74 (101)
205 3htk_A Structural maintenance 29.9 1.3E+02 0.0043 20.1 6.0 47 19-65 6-52 (60)
206 3m48_A General control protein 29.9 76 0.0026 18.9 3.6 25 67-91 7-31 (33)
207 2v71_A Nuclear distribution pr 29.7 2.6E+02 0.009 23.8 10.5 82 15-99 7-88 (189)
208 2oxj_A Hybrid alpha/beta pepti 29.0 80 0.0027 18.9 3.6 25 67-91 8-32 (34)
209 4etp_B Spindle POLE BODY-assoc 28.3 81 0.0028 29.4 5.5 38 57-94 28-65 (333)
210 3vld_A DNA mismatch repair pro 28.1 4.5E+02 0.015 26.0 11.5 112 175-293 110-223 (500)
211 2efk_A CDC42-interacting prote 27.9 3.2E+02 0.011 24.3 10.3 16 59-74 129-144 (301)
212 2jee_A YIIU; FTSZ, septum, coi 27.8 1.8E+02 0.0061 21.2 6.7 19 75-93 49-67 (81)
213 1kd8_B GABH BLL, GCN4 acid bas 27.6 1E+02 0.0036 18.6 4.0 25 68-92 9-33 (36)
214 3cvf_A Homer-3, homer protein 27.5 1.4E+02 0.0047 21.7 5.5 30 26-55 14-43 (79)
215 1uo4_A General control protein 27.5 88 0.003 18.7 3.6 24 68-91 9-32 (34)
216 3l4f_A RHO guanine nucleotide 27.0 1.5E+02 0.0053 20.3 6.1 35 57-91 18-52 (61)
217 3qml_C Protein SLS1, nucleotid 27.0 3.8E+02 0.013 24.8 10.4 98 150-253 80-188 (315)
218 1gmj_A ATPase inhibitor; coile 26.8 1.1E+02 0.0037 22.5 4.8 15 34-48 35-49 (84)
219 2bni_A General control protein 26.7 90 0.0031 18.7 3.5 25 67-91 8-32 (34)
220 1i84_S Smooth muscle myosin he 26.7 1.9E+02 0.0065 32.0 9.3 71 20-90 866-936 (1184)
221 1d7m_A Cortexillin I; coiled-c 26.6 2E+02 0.0067 21.3 6.6 54 18-71 4-57 (101)
222 3jsv_C NF-kappa-B essential mo 26.4 2.1E+02 0.007 21.5 8.0 59 30-95 31-89 (94)
223 3ghg_A Fibrinogen alpha chain; 26.1 3E+02 0.01 27.4 9.3 32 17-48 63-94 (562)
224 3na7_A HP0958; flagellar bioge 25.5 3.5E+02 0.012 23.9 10.1 34 59-92 89-122 (256)
225 2xpp_A IWS1, ECU08_0440; trans 24.9 2.8E+02 0.0095 22.5 9.6 80 253-353 48-135 (145)
226 3vp9_A General transcriptional 24.9 54 0.0018 24.6 3.0 17 34-50 70-86 (92)
227 3a6p_A Exportin-5; exportin-5, 24.2 6.6E+02 0.022 27.7 13.1 134 188-354 19-162 (1204)
228 3oja_A Leucine-rich immune mol 23.9 1.8E+02 0.0062 28.3 7.7 25 51-75 454-478 (487)
229 3vkg_A Dynein heavy chain, cyt 23.6 1.4E+02 0.0046 37.1 7.6 25 59-83 2041-2065(3245)
230 3a7o_A Autophagy protein 16; c 23.4 1.8E+02 0.0063 20.4 5.3 22 13-34 9-30 (75)
231 3fx0_A NF-kappa-B essential mo 23.2 1.8E+02 0.0062 21.8 5.6 79 21-106 2-83 (96)
232 1dvp_A HRS, hepatocyte growth 22.8 64 0.0022 28.1 3.7 62 326-387 43-106 (220)
233 3a5t_A Transcription factor MA 22.7 7.4 0.00025 30.3 -2.2 39 35-73 61-99 (107)
234 1elk_A Target of MYB1; superhe 22.4 2.9E+02 0.0099 22.5 7.5 70 226-295 55-130 (157)
235 1zoq_C CREB-binding protein, i 22.2 1.1E+02 0.0036 19.6 3.5 37 367-403 2-38 (47)
236 3htk_A Structural maintenance 21.8 1.7E+02 0.0059 19.4 5.0 32 58-89 24-55 (60)
237 1qp6_A Protein (alpha2D); de n 21.8 1.3E+02 0.0043 17.4 4.0 30 39-73 4-33 (35)
238 1x8y_A Lamin A/C; structural p 21.8 2.2E+02 0.0076 20.7 6.0 49 39-87 28-76 (86)
239 1ik9_A DNA repair protein XRCC 21.1 4E+02 0.014 23.0 9.2 25 59-83 152-176 (213)
240 3na7_A HP0958; flagellar bioge 21.0 3E+02 0.01 24.3 8.0 38 16-53 88-125 (256)
241 3cvf_A Homer-3, homer protein 20.8 1.4E+02 0.0048 21.7 4.4 43 61-103 28-70 (79)
242 2efl_A Formin-binding protein 20.5 4.5E+02 0.015 23.3 10.6 14 60-73 137-150 (305)
243 1elk_A Target of MYB1; superhe 20.4 1.9E+02 0.0064 23.7 5.9 69 142-210 55-129 (157)
244 2wq1_A General control protein 20.1 1.5E+02 0.0051 17.6 3.6 24 68-91 8-31 (33)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.98 E-value=1.2e-30 Score=268.54 Aligned_cols=290 Identities=19% Similarity=0.280 Sum_probs=246.9
Q ss_pred HhhhHHHHHHHHhhhhhhhHHHHH-HHhhhhcccccccccccccchhhhhhcCCCCchHHHHHHhcCHHHHHHhhc-CCC
Q 041050 76 KRKLEEEIVILRSQLLQLTFEADQ-MQKCLERGEFGNTFTGLDKHSQFRDSGNGQKAPITKLFEQVGLHKILSLLE-SED 153 (408)
Q Consensus 76 ~~~~~~~~~~l~~~l~~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~-s~~ 153 (408)
+.++++.+.+++|.+.+.+.++++ .||.++++ .++++..+++.|+||+|+++|+ +++
T Consensus 56 ~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e---------------------~~ppi~~ii~~G~ip~LV~lL~~~~~ 114 (510)
T 3ul1_B 56 NWSVEDIVKGINSNNLESQLQATQAARKLLSRE---------------------KQPPIDNIIRAGLIPKFVSFLGKTDC 114 (510)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCS---------------------SCCCHHHHHHTTHHHHHHHHTTCTTC
T ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC---------------------CCchHHHHHHCCCHHHHHHHHCCCCC
Confidence 346899999999999999999987 88888876 7888999999999999999998 567
Q ss_pred HHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHH
Q 041050 154 ANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTT 232 (408)
Q Consensus 154 ~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~l 232 (408)
+.+|..|+|+|+||+. +++++..+++.|++|.|+.+|.+ +++.++..|+|+|+||+.+++..+..+.+.|+++.|+.+
T Consensus 115 ~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s-~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~l 193 (510)
T 3ul1_B 115 SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 193 (510)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHH
Confidence 9999999999999987 78899999999999999999994 789999999999999999889999999999999888776
Q ss_pred hhc----------------------------------------------CCCHHHHHHHHHHHHHHh-CCchhHHHHHhc
Q 041050 233 AAD----------------------------------------------AEDPQTLRMVAGAIANLC-GNDKLQMKLRSE 265 (408)
Q Consensus 233 L~~----------------------------------------------~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~ 265 (408)
+.. ++++.++..++++|++|+ .+++....+.+.
T Consensus 194 L~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~ 273 (510)
T 3ul1_B 194 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKK 273 (510)
T ss_dssp TCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTT
T ss_pred HHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhc
Confidence 531 345667777888888888 444556677889
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHH
Q 041050 266 GGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHI 345 (408)
Q Consensus 266 g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a 345 (408)
|+++.|+.++.++++.++..++++|+|++. +++.....+++.|+++.|+.++.++++.++..|
T Consensus 274 g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~-----------------~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A 336 (510)
T 3ul1_B 274 GVVPQLVKLLGATELPIVTPALRAIGNIVT-----------------GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336 (510)
T ss_dssp TCHHHHHHHHTCSCHHHHHHHHHHHHHHTT-----------------SCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred ccchhhhhhhcCCChhhhhHHHHHHHHhhc-----------------CCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence 999999999999999999999999999997 888888999999999999999999999999999
Q ss_pred HHHHHHHccC-chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhc-----cHhhHHHHHhhh
Q 041050 346 ELALCHLAQH-EVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSS-----SLTFRAEMRRLR 405 (408)
Q Consensus 346 ~~aL~~La~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~-----~~~~~~~~~~~~ 405 (408)
+|+|+|++.+ .++...+++.|+++.|+.++.+.+. +++..|.++|.+ .+.....+.+.|
T Consensus 337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~-~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g 401 (510)
T 3ul1_B 337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTSGGTVEQIVYLVHCG 401 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCH-HHHHHHHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHccCCHHHHHHHHHCC
Confidence 9999999987 4556677799999999999997654 445555555433 344444455554
No 2
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=7.9e-31 Score=257.36 Aligned_cols=258 Identities=19% Similarity=0.207 Sum_probs=222.1
Q ss_pred cchhhhhhcCCCCchHHHHHHhcCHHHHHHhhcC-----------CCHHHHHHHHHHHHHHcCC-chhHHHHHHhCC-HH
Q 041050 118 KHSQFRDSGNGQKAPITKLFEQVGLHKILSLLES-----------EDANVRIHAVKVVANLAAE-EANQEKIVEAGG-LS 184 (408)
Q Consensus 118 ~~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s-----------~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~-i~ 184 (408)
.....+.++++..++.+.+++.||++.|+.+|.+ .++.++..|+++|.||+.+ +.++..+...+| ||
T Consensus 51 ~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp 130 (354)
T 3nmw_A 51 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 130 (354)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHH
Confidence 3467888999888888999999999999999953 2478999999999999984 558877876666 99
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhccC-ChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CchhHHHH
Q 041050 185 SLLMLLRSFEDETIRRVAAGAIANLAMN-AEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG-NDKLQMKL 262 (408)
Q Consensus 185 ~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~-~~~~~~~i 262 (408)
.|+.+|.+ +++.++..|+++|+||+.. ++.++..|++.|++|.|+.+|.++.++.+++.++++|+||+. ++.++..+
T Consensus 131 ~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i 209 (354)
T 3nmw_A 131 ALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 209 (354)
T ss_dssp HHHHGGGC-SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHH
Confidence 99999994 7899999999999999984 478999999999999999987677788999999999999996 88888888
Q ss_pred H-hcccHHHHHHhhcCCCH----HHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC
Q 041050 263 R-SEGGIRALLGMVRCGHP----DVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE 337 (408)
Q Consensus 263 ~-~~g~l~~L~~lL~~~~~----~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~ 337 (408)
. ..|+++.|+.+|.++++ ++++.|+++|+||+. -.+++++.+..+.+.|++|.|+.+|+++
T Consensus 210 ~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~--------------~~a~~~~~~~~i~~~g~i~~Lv~lL~~~ 275 (354)
T 3nmw_A 210 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS--------------LIATNEDHRQILRENNCLQTLLQHLKSH 275 (354)
T ss_dssp HHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHH--------------HHTTCHHHHHHHHTTTHHHHHHHHTTCS
T ss_pred HHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHh--------------hccCCHHHHHHHHHcCCHHHHHHHHcCC
Confidence 8 78999999999986654 599999999999983 0125788899999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 041050 338 AAPIRRHIELALCHLAQ-HEVNAREMISGGALWELVRISRDCSREDIRSLAHRTL 391 (408)
Q Consensus 338 ~~~v~~~a~~aL~~La~-~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L 391 (408)
+.+++++|+++|+||+. +++++..+++.|+++.|++++.+.+. .++..|.++|
T Consensus 276 ~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~-~i~~~A~~aL 329 (354)
T 3nmw_A 276 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHK-MIAMGSAAAL 329 (354)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSH-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCH-HHHHHHHHHH
Confidence 99999999999999996 57788889999999999999997655 4455555443
No 3
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.97 E-value=2.6e-29 Score=259.75 Aligned_cols=291 Identities=19% Similarity=0.283 Sum_probs=244.3
Q ss_pred HhhhHHHHHHHHhhhhhhhHHHHH-HHhhhhcccccccccccccchhhhhhcCCCCchHHHHHHhcCHHHHHHhhc-CCC
Q 041050 76 KRKLEEEIVILRSQLLQLTFEADQ-MQKCLERGEFGNTFTGLDKHSQFRDSGNGQKAPITKLFEQVGLHKILSLLE-SED 153 (408)
Q Consensus 76 ~~~~~~~~~~l~~~l~~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~-s~~ 153 (408)
...+++.+.+++|...+....+.+ .|+.++++ .++.+..+++.|++|.|+.+|+ +++
T Consensus 75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~---------------------~~~~i~~ii~~G~ip~Lv~lL~~~~~ 133 (529)
T 3tpo_A 75 NWSVEDIVKGINSNNLESQLQATQAARKLLSRE---------------------KQPPIDNIIRAGLIPKFVSFLGKTDC 133 (529)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSS---------------------SCCCHHHHHHTTHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC---------------------CCchHHHHHHCCCHHHHHHHHcCCCC
Confidence 346888999999999998888887 77776655 6778899999999999999997 677
Q ss_pred HHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHH
Q 041050 154 ANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTT 232 (408)
Q Consensus 154 ~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~l 232 (408)
+.++..|+|+|+||+. ++.++..+++.|++|.|+.+|.+ +++.++..|+|+|+||+.+++.++..+++.|+++.|+.+
T Consensus 134 ~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s-~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~l 212 (529)
T 3tpo_A 134 SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLAL 212 (529)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHH
Confidence 9999999999999998 67888999999999999999984 789999999999999999889999999999999888766
Q ss_pred hhc----------------------------------------------CCCHHHHHHHHHHHHHHh-CCchhHHHHHhc
Q 041050 233 AAD----------------------------------------------AEDPQTLRMVAGAIANLC-GNDKLQMKLRSE 265 (408)
Q Consensus 233 L~~----------------------------------------------~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~ 265 (408)
|.. ++++.++..++|+|++++ .++.....+.+.
T Consensus 213 L~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~ 292 (529)
T 3tpo_A 213 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKK 292 (529)
T ss_dssp TCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTT
T ss_pred HhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhc
Confidence 531 245666777788888887 444556677889
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHH
Q 041050 266 GGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHI 345 (408)
Q Consensus 266 g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a 345 (408)
|+++.|+.++.++++.++..++++|+|++. +++.....+++.|+++.|+.++.++++.++..|
T Consensus 293 g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~-----------------~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a 355 (529)
T 3tpo_A 293 GVVPQLVKLLGATELPIVTPALRAIGNIVT-----------------GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 355 (529)
T ss_dssp TCHHHHHHHHTCSCHHHHHHHHHHHHHHTT-----------------SCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred cchHHHHHHhcCCChhHHHHHHHHHHHHHc-----------------cchHHHHHHhhcccHHHHHHHHcCCCHHHHHHH
Confidence 999999999999999999999999999997 888888999999999999999999999999999
Q ss_pred HHHHHHHccC-chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhc-----cHhhHHHHHhhhh
Q 041050 346 ELALCHLAQH-EVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSS-----SLTFRAEMRRLRI 406 (408)
Q Consensus 346 ~~aL~~La~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~-----~~~~~~~~~~~~~ 406 (408)
+|+|+|++.+ +.....+++.|+++.|+.++.+.+.+ ++..|.++|.+ .+.....+...|+
T Consensus 356 ~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~-v~~~A~~aL~nl~~~~~~~~~~~l~~~g~ 421 (529)
T 3tpo_A 356 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK-TQKAAAWAITNYTSGGTVEQIVYLVHCGI 421 (529)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHSCHHHHHHHHHTTC
T ss_pred HHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHH-HHHHHHHHHHHHHcCCCHHHHHHHHHCcC
Confidence 9999999987 45566677999999999999976554 44455544432 3444445555553
No 4
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=7.2e-30 Score=258.04 Aligned_cols=257 Identities=18% Similarity=0.208 Sum_probs=220.1
Q ss_pred chhhhhhcCCCCchHHHHHHhcCHHHHHHhhcC-----------CCHHHHHHHHHHHHHHcCCc-hhHHHHHHhCC-HHH
Q 041050 119 HSQFRDSGNGQKAPITKLFEQVGLHKILSLLES-----------EDANVRIHAVKVVANLAAEE-ANQEKIVEAGG-LSS 185 (408)
Q Consensus 119 ~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s-----------~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~-i~~ 185 (408)
....+.+++...++...+++.|++++|+.+|.+ .++.++..|+++|.||+.++ .++..+...+| ||.
T Consensus 168 Av~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~ 247 (458)
T 3nmz_A 168 AVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRA 247 (458)
T ss_dssp HHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHH
Confidence 356688888888888899999999999999952 34779999999999999954 57777766555 999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhccC-ChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CchhHHHHH
Q 041050 186 LLMLLRSFEDETIRRVAAGAIANLAMN-AEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG-NDKLQMKLR 263 (408)
Q Consensus 186 L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~-~~~~~~~i~ 263 (408)
|+.+|. +.++.++..|+|+|+||+.. ++.++..|++.||+|.|+.+|.++.++.+++.++++|+||+. ++.++..+.
T Consensus 248 LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~ 326 (458)
T 3nmz_A 248 LVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 326 (458)
T ss_dssp HHHGGG-CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 999999 47899999999999999984 478999999999999999987677789999999999999996 888988888
Q ss_pred -hcccHHHHHHhhcCCCH----HHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCC
Q 041050 264 -SEGGIRALLGMVRCGHP----DVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEA 338 (408)
Q Consensus 264 -~~g~l~~L~~lL~~~~~----~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~ 338 (408)
..|+++.|+.+|.++++ .+++.|+++|+||+. -.+++++++..+.+.|++|.|+.+|++++
T Consensus 327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~--------------~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~ 392 (458)
T 3nmz_A 327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS--------------LIATNEDHRQILRENNCLQTLLQHLKSHS 392 (458)
T ss_dssp HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHH--------------HHTTCHHHHHHHHHTTHHHHHHHHSSCSC
T ss_pred HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHh--------------cccCCHHHHHHHHHcccHHHHHHHHcCCC
Confidence 78999999999976554 599999999999983 01257888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 041050 339 APIRRHIELALCHLAQ-HEVNAREMISGGALWELVRISRDCSREDIRSLAHRTL 391 (408)
Q Consensus 339 ~~v~~~a~~aL~~La~-~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L 391 (408)
.+++++|+++|+|++. +++++..+++.|+++.|++++.+.+. .++..|.++|
T Consensus 393 ~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~-~v~~~Aa~AL 445 (458)
T 3nmz_A 393 LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHK-MIAMGSAAAL 445 (458)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSH-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCH-HHHHHHHHHH
Confidence 9999999999999995 57888889999999999999987654 4444555443
No 5
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.96 E-value=8.9e-28 Score=243.98 Aligned_cols=280 Identities=18% Similarity=0.220 Sum_probs=220.2
Q ss_pred hhhcCCCCch-HHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHH
Q 041050 123 RDSGNGQKAP-ITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRR 200 (408)
Q Consensus 123 l~~ls~~~~~-~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~ 200 (408)
+.+++..+++ ...+++.|++|.|+.+|+++++.++..|+++|.||+. +++++..|++.||+|+|+.+|..+.++.++.
T Consensus 26 L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~ 105 (457)
T 1xm9_A 26 IQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQK 105 (457)
T ss_dssp HHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHH
Confidence 3444434444 4589999999999999999999999999999999998 5999999999999999999998446899999
Q ss_pred HHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh--------cC-------CCHHHHHHHHHHHHHHhCCchhHHHHHhc
Q 041050 201 VAAGAIANLAMNAEANQELIMAQGGISLLSTTAA--------DA-------EDPQTLRMVAGAIANLCGNDKLQMKLRSE 265 (408)
Q Consensus 201 ~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~--------~~-------~~~~v~~~a~~aL~nL~~~~~~~~~i~~~ 265 (408)
.|+|+|+||+.+ +.++..+++ |++|.|+.+|. +. .++.+.+.++|+|+|||.+++++..+++.
T Consensus 106 ~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~ 183 (457)
T 1xm9_A 106 QLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183 (457)
T ss_dssp HHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTS
T ss_pred HHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHc
Confidence 999999999999 999999999 99999999993 11 35788889999999999889999999997
Q ss_pred -ccHHHHHHhhcC------CCHHHHHHHHHHHHHhhcc------------------------------------------
Q 041050 266 -GGIRALLGMVRC------GHPDVLSQVARGIANFAKC------------------------------------------ 296 (408)
Q Consensus 266 -g~l~~L~~lL~~------~~~~v~~~a~~aL~nL~~~------------------------------------------ 296 (408)
|+++.|+.++.+ .+..+...|+++|.||+..
T Consensus 184 ~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (457)
T 1xm9_A 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYD 263 (457)
T ss_dssp TTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--------------------------
T ss_pred CCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhcccc
Confidence 999999999974 4556777888888888620
Q ss_pred ---------------------------------chhhhhHHHhhhhhcc-CChh----h-HHHHHhcCcHHHHHHhccCC
Q 041050 297 ---------------------------------ESRAATQVRFIRCTAT-GVKS----G-RSLLIEDGALPWIVQNANNE 337 (408)
Q Consensus 297 ---------------------------------~~~~~~~~~~~i~~~~-~~~~----~-~~~i~~~g~l~~Lv~lL~~~ 337 (408)
+++......|++++++ |+.. . +..+.+.|++|.|++++.++
T Consensus 264 ~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~ 343 (457)
T 1xm9_A 264 CPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG 343 (457)
T ss_dssp --CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS
T ss_pred CCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC
Confidence 0011112235566654 3322 2 33445789999999999999
Q ss_pred CHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCC-----HHHHHHHHHHHH----hccHhhHHHHHhhh
Q 041050 338 AAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCS-----REDIRSLAHRTL----SSSLTFRAEMRRLR 405 (408)
Q Consensus 338 ~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~-----~~~~~~~A~~~L----~~~~~~~~~~~~~~ 405 (408)
+.++++.|+|+|.|++.++.+. .++..|+++.|++++.+.+ .+++...+.++| ...+.....+...|
T Consensus 344 ~~~v~~~A~~aL~nls~~~~~~-~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g 419 (457)
T 1xm9_A 344 NSDVVRSGASLLSNMSRHPLLH-RVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSS 419 (457)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGH-HHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHH
T ss_pred CHhHHHHHHHHHHHHhcCHHHH-HHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 9999999999999999987765 4555689999999999764 345555555444 44555555554443
No 6
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=1.7e-27 Score=220.20 Aligned_cols=235 Identities=23% Similarity=0.409 Sum_probs=214.9
Q ss_pred cCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH
Q 041050 140 VGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE 218 (408)
Q Consensus 140 ~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~ 218 (408)
+++|.|+.+|.+++++++..|+++|.+++. .++++..+++.|+++.|+.+|.+ .++.++..|+++|+||+.+++.++.
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCChHHHH
Confidence 578999999999999999999999999998 55699999999999999999995 6799999999999999998899999
Q ss_pred HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 041050 219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCE 297 (408)
Q Consensus 219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~ 297 (408)
.+++.|+++.|+.++ .++++.++..++++|+||+ .++.++..+.+.|+++.|+.+++++++.++..++++|+||+.
T Consensus 81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~-- 157 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS-- 157 (252)
T ss_dssp HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--
T ss_pred HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc--
Confidence 999999999999998 4678999999999999999 889999999999999999999999999999999999999997
Q ss_pred hhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC-chhHHHHHhCCcHHHHHHHHh
Q 041050 298 SRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH-EVNAREMISGGALWELVRISR 376 (408)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~-~~~~~~l~~~g~i~~L~~ll~ 376 (408)
+++..+..+.+.|+++.|+.++.++++.++..|+++|++++.+ +.....+.+.|+++.|++++.
T Consensus 158 ---------------~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~ 222 (252)
T 4hxt_A 158 ---------------GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLT 222 (252)
T ss_dssp ---------------SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGG
T ss_pred ---------------CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHC
Confidence 6777778899999999999999999999999999999999986 556677889999999999999
Q ss_pred cCCHHHHHHHHHHHHhcc
Q 041050 377 DCSREDIRSLAHRTLSSS 394 (408)
Q Consensus 377 ~~~~~~~~~~A~~~L~~~ 394 (408)
+.+. +++..|.++|.+.
T Consensus 223 ~~~~-~v~~~a~~~L~~l 239 (252)
T 4hxt_A 223 STDS-EVQKEAQRALENI 239 (252)
T ss_dssp CSCH-HHHHHHHHHHHHH
T ss_pred CCcH-HHHHHHHHHHHHH
Confidence 6544 6777777776543
No 7
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=1.8e-27 Score=246.06 Aligned_cols=280 Identities=20% Similarity=0.199 Sum_probs=224.8
Q ss_pred hhcC-CCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHH
Q 041050 124 DSGN-GQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRR 200 (408)
Q Consensus 124 ~~ls-~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~ 200 (408)
.+++ +..++...+++.|+||.|+.+|++++++++..|+++|.||+. +++++..|++.||||+|+.+|.+..+..+++
T Consensus 73 ~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e 152 (584)
T 3l6x_A 73 QHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTE 152 (584)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHH
Confidence 3443 467788889999999999999999999999999999999998 4899999999999999999999656789999
Q ss_pred HHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh-----------------cCCCHHHHHHHHHHHHHHhC-CchhHHHH
Q 041050 201 VAAGAIANLAMNAEANQELIMAQGGISLLSTTAA-----------------DAEDPQTLRMVAGAIANLCG-NDKLQMKL 262 (408)
Q Consensus 201 ~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~-----------------~~~~~~v~~~a~~aL~nL~~-~~~~~~~i 262 (408)
.|+++|+||+.+ +.++..|++ +|+|.|+.++. ...++.++..++++|.||+. +++++..+
T Consensus 153 ~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i 230 (584)
T 3l6x_A 153 VITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKL 230 (584)
T ss_dssp HHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999998 999999996 67999999862 23468999999999999995 45679999
Q ss_pred Hhcc-cHHHHHHhhcC------CCHHHHHHHHHHHHHhhccch-hh----------------------------------
Q 041050 263 RSEG-GIRALLGMVRC------GHPDVLSQVARGIANFAKCES-RA---------------------------------- 300 (408)
Q Consensus 263 ~~~g-~l~~L~~lL~~------~~~~v~~~a~~aL~nL~~~~~-~~---------------------------------- 300 (408)
++.+ +++.|+.++++ .+..++++|+++|+||+.+-. +.
T Consensus 231 ~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v 310 (584)
T 3l6x_A 231 RECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVV 310 (584)
T ss_dssp HHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHH
T ss_pred HHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHH
Confidence 9855 56799999863 466789999999999986310 00
Q ss_pred ---------------hhHHHhhhhhc-cCC----hhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHH
Q 041050 301 ---------------ATQVRFIRCTA-TGV----KSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAR 360 (408)
Q Consensus 301 ---------------~~~~~~~i~~~-~~~----~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~ 360 (408)
.....+++.++ +|+ ...+..+.+.|++|.|+.+|.+++.++++.|+++|+||+.+..++.
T Consensus 311 ~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~ 390 (584)
T 3l6x_A 311 RIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKE 390 (584)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHH
Confidence 01112345555 343 2334455677999999999999999999999999999999987765
Q ss_pred HHHhCCcHHHHHHHHhcCC-------HHHHHHHHHHHH----hccHhhHHHHHhhhh
Q 041050 361 EMISGGALWELVRISRDCS-------REDIRSLAHRTL----SSSLTFRAEMRRLRI 406 (408)
Q Consensus 361 ~l~~~g~i~~L~~ll~~~~-------~~~~~~~A~~~L----~~~~~~~~~~~~~~~ 406 (408)
. +..|+++.|+++|.+.+ .+++...|.++| ..++.....+.+.|.
T Consensus 391 ~-I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~ 446 (584)
T 3l6x_A 391 L-IGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQG 446 (584)
T ss_dssp H-HHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred H-HHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Confidence 4 47899999999998763 345666666655 456777777776663
No 8
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.96 E-value=5.1e-27 Score=242.55 Aligned_cols=255 Identities=16% Similarity=0.243 Sum_probs=220.3
Q ss_pred hhhhhhc-CCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcC-----
Q 041050 120 SQFRDSG-NGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRS----- 192 (408)
Q Consensus 120 ~~~l~~l-s~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~----- 192 (408)
.+.+.++ ++...+...+++.|++|.|+.+|.+++++++..|+++|+||+. ++.++..+++.|++++|+.+|..
T Consensus 141 a~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~ 220 (529)
T 3tpo_A 141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLST 220 (529)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGG
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhH
Confidence 3456777 4556677889999999999999999999999999999999998 68899999999999988887742
Q ss_pred -----------------------------------------CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHH
Q 041050 193 -----------------------------------------FEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLST 231 (408)
Q Consensus 193 -----------------------------------------~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~ 231 (408)
+.++.++..|+|+|++++.+++.....++..|+++.|+.
T Consensus 221 ~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~ 300 (529)
T 3tpo_A 221 LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 300 (529)
T ss_dssp SCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHH
Confidence 124456677778888888775677788899999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhh
Q 041050 232 TAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCT 310 (408)
Q Consensus 232 lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~ 310 (408)
+| .++++.++..++++|+||+ +++..+..+++.|+++.|+.++.++++.+++.|+|+|+|++.
T Consensus 301 lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~--------------- 364 (529)
T 3tpo_A 301 LL-GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA--------------- 364 (529)
T ss_dssp HH-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHT---------------
T ss_pred Hh-cCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhc---------------
Confidence 98 5688999999999999998 788889999999999999999999999999999999999997
Q ss_pred ccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC--chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHH
Q 041050 311 ATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH--EVNAREMISGGALWELVRISRDCSREDIRSLAH 388 (408)
Q Consensus 311 ~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~ 388 (408)
++++.+..+.+.|++|.|+.++.+++.+++..|+|+|+|++.+ .++...+++.|+++.|++++.+.+. .+...+.
T Consensus 365 --~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~-~i~~~~L 441 (529)
T 3tpo_A 365 --GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT-KIIQVIL 441 (529)
T ss_dssp --SCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCH-HHHHHHH
T ss_pred --ccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCH-HHHHHHH
Confidence 8889999999999999999999999999999999999999974 5667889999999999999997654 4455555
Q ss_pred HHHhc
Q 041050 389 RTLSS 393 (408)
Q Consensus 389 ~~L~~ 393 (408)
.+|.+
T Consensus 442 ~aL~n 446 (529)
T 3tpo_A 442 DAISN 446 (529)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 9
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.95 E-value=2.4e-27 Score=232.63 Aligned_cols=221 Identities=16% Similarity=0.199 Sum_probs=194.7
Q ss_pred hhhhhcCCCCchHHH-HHHhcC-HHHHHHhhcCCCHHHHHHHHHHHHHHcCC--chhHHHHHHhCCHHHHHHHHcCCCCH
Q 041050 121 QFRDSGNGQKAPITK-LFEQVG-LHKILSLLESEDANVRIHAVKVVANLAAE--EANQEKIVEAGGLSSLLMLLRSFEDE 196 (408)
Q Consensus 121 ~~l~~ls~~~~~~~~-l~~~~~-v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~L~~lL~~~~~~ 196 (408)
..+.++...++..+. +...+| +|.|+.+|++++++++..|+++|.||+.. +.++..+++.|+||+|+.+|..+.++
T Consensus 106 ~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~ 185 (354)
T 3nmw_A 106 MALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE 185 (354)
T ss_dssp HHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCH
Confidence 456677655554444 445555 99999999999999999999999999984 68999999999999999986445678
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHH-hcCcHHHHHHHhhcCCCH---HHHHHHHHHHHHHh----CCchhHHHHHhcccH
Q 041050 197 TIRRVAAGAIANLAMNAEANQELIM-AQGGISLLSTTAADAEDP---QTLRMVAGAIANLC----GNDKLQMKLRSEGGI 268 (408)
Q Consensus 197 ~v~~~A~~aL~nLa~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~---~v~~~a~~aL~nL~----~~~~~~~~i~~~g~l 268 (408)
.+++.|+++|+||+..+++++..|+ ..|++|.|+.+|....+. .++..++++|.||+ .++++++.+++.|++
T Consensus 186 ~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i 265 (354)
T 3nmw_A 186 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCL 265 (354)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCH
Confidence 9999999999999995488999988 799999999999654432 58999999999998 489999999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHH
Q 041050 269 RALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELA 348 (408)
Q Consensus 269 ~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~a 348 (408)
+.|+.+|++++..++++|+++|+||+. ++++.+..+.+.|++|.|+.++++++..+++.|+++
T Consensus 266 ~~Lv~lL~~~~~~v~~~A~~aL~nLa~-----------------~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~a 328 (354)
T 3nmw_A 266 QTLLQHLKSHSLTIVSNACGTLWNLSA-----------------RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAA 328 (354)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTS-----------------SCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHhC-----------------CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999996 789999999999999999999999999999999999
Q ss_pred HHHHccCchh
Q 041050 349 LCHLAQHEVN 358 (408)
Q Consensus 349 L~~La~~~~~ 358 (408)
|.||+.+.+.
T Consensus 329 L~nL~~~~~~ 338 (354)
T 3nmw_A 329 LRNLMANRPA 338 (354)
T ss_dssp HHHHHTTCCG
T ss_pred HHHHHcCCHH
Confidence 9999988443
No 10
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=7e-27 Score=217.17 Aligned_cols=234 Identities=22% Similarity=0.325 Sum_probs=211.6
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH
Q 041050 141 GLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL 219 (408)
Q Consensus 141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 219 (408)
.++.++.+|.+++++++..|+++|.++.. .++++..+++.|++|.|+.+|.+ +++.++..|+++|+|++.+++.++..
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 58999999999999999999999987665 78889999999999999999995 57999999999999999966999999
Q ss_pred HHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhH-HHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccch
Q 041050 220 IMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQ-MKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCES 298 (408)
Q Consensus 220 i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~-~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~ 298 (408)
+++.|+++.|+.+|. ++++.++..++++|+||+.++..+ ..+.+.|+++.|+.++.++++.++..|+++|+||+.
T Consensus 92 i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--- 167 (252)
T 4db8_A 92 VIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--- 167 (252)
T ss_dssp HHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT---
T ss_pred HHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc---
Confidence 999999999999994 578999999999999999888877 889999999999999999999999999999999997
Q ss_pred hhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC-chhHHHHHhCCcHHHHHHHHhc
Q 041050 299 RAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH-EVNAREMISGGALWELVRISRD 377 (408)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~-~~~~~~l~~~g~i~~L~~ll~~ 377 (408)
+++..+..+.+.|+++.|+.++.++++.++..|+++|++++.+ ++....+++.|+++.|+.++.+
T Consensus 168 --------------~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~ 233 (252)
T 4db8_A 168 --------------GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 233 (252)
T ss_dssp --------------SCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTC
T ss_pred --------------CChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCC
Confidence 6778888889999999999999999999999999999999976 5666778899999999999986
Q ss_pred CCHHHHHHHHHHHHhcc
Q 041050 378 CSREDIRSLAHRTLSSS 394 (408)
Q Consensus 378 ~~~~~~~~~A~~~L~~~ 394 (408)
. +.+++..|.++|.+.
T Consensus 234 ~-~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 234 E-NEKIQKEAQEALEKL 249 (252)
T ss_dssp S-SSHHHHTHHHHHHTT
T ss_pred C-CHHHHHHHHHHHHHH
Confidence 5 446777777777553
No 11
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.95 E-value=6.2e-27 Score=240.91 Aligned_cols=253 Identities=16% Similarity=0.244 Sum_probs=220.1
Q ss_pred hhhhhc-CCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcC------
Q 041050 121 QFRDSG-NGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRS------ 192 (408)
Q Consensus 121 ~~l~~l-s~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~------ 192 (408)
+.+.++ ++..++.+.+++.|++|.|+.+|+++++++++.|+++|+||+. ++..+..+.+.|++++|+.+|..
T Consensus 123 ~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~ 202 (510)
T 3ul1_B 123 WALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL 202 (510)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGS
T ss_pred HHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhh
Confidence 346777 6777888899999999999999999999999999999999998 67889999999999988887742
Q ss_pred ----------------------------------------CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHH
Q 041050 193 ----------------------------------------FEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTT 232 (408)
Q Consensus 193 ----------------------------------------~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~l 232 (408)
+.++.++..|+|+|++|+.+++.....+.+.|+++.|+.+
T Consensus 203 ~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 282 (510)
T 3ul1_B 203 ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL 282 (510)
T ss_dssp CHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhh
Confidence 2345667778888888888756677788899999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhc
Q 041050 233 AADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTA 311 (408)
Q Consensus 233 L~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~ 311 (408)
| .+.++.++..++++|+|++ +++..+..+++.|+++.|+.++.++++.+++.|+|+|+||+.
T Consensus 283 L-~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a---------------- 345 (510)
T 3ul1_B 283 L-GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA---------------- 345 (510)
T ss_dssp H-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTT----------------
T ss_pred h-cCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHc----------------
Confidence 8 5688899999999999998 788888999999999999999999999999999999999997
Q ss_pred cCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC--chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHH
Q 041050 312 TGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH--EVNAREMISGGALWELVRISRDCSREDIRSLAHR 389 (408)
Q Consensus 312 ~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~ 389 (408)
++++.+..+.+.|++|.|+.++.+++.+++..|+|+|+|++.+ .++...+++.|+++.|++++.+.+. .+...+.+
T Consensus 346 -~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~-~i~~~~L~ 423 (510)
T 3ul1_B 346 -GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT-KIIQVILD 423 (510)
T ss_dssp -SCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCH-HHHHHHHH
T ss_pred -CcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCH-HHHHHHHH
Confidence 8889999999999999999999999999999999999999974 5667788999999999999997654 45555555
Q ss_pred HHh
Q 041050 390 TLS 392 (408)
Q Consensus 390 ~L~ 392 (408)
+|.
T Consensus 424 aL~ 426 (510)
T 3ul1_B 424 AIS 426 (510)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 12
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.95 E-value=6.8e-26 Score=233.36 Aligned_cols=246 Identities=18% Similarity=0.296 Sum_probs=218.0
Q ss_pred CchHHHHHHhcCHHHHHHhhcCCC-HHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHH
Q 041050 130 KAPITKLFEQVGLHKILSLLESED-ANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIA 207 (408)
Q Consensus 130 ~~~~~~l~~~~~v~~Ll~lL~s~~-~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~ 207 (408)
+++...+++.|++|.|+.+|.+++ +.++..|+++|++++. +++++..+++.|++|.|+.+|.+ +++.++..|+++|+
T Consensus 107 ~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~aL~ 185 (528)
T 4b8j_A 107 SPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS-SSDDVREQAVWALG 185 (528)
T ss_dssp SCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHH
T ss_pred CchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcC-CCHHHHHHHHHHHH
Confidence 477889999999999999999876 9999999999999999 58899999999999999999995 68999999999999
Q ss_pred HhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHH
Q 041050 208 NLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVA 287 (408)
Q Consensus 208 nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~ 287 (408)
||+.+++.++..+.+.|+++.|+.++..+.++.++..++++|+||+.+..........|+++.|+.++.++++.++..|+
T Consensus 186 ~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~ 265 (528)
T 4b8j_A 186 NVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDAC 265 (528)
T ss_dssp HHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 99998788999999999999999999777889999999999999995543334445589999999999999999999999
Q ss_pred HHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC-chhHHHHHhCC
Q 041050 288 RGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH-EVNAREMISGG 366 (408)
Q Consensus 288 ~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~-~~~~~~l~~~g 366 (408)
++|.+|+. +.+.....+.+.|+++.|+.++.++++.++..|+++|++++.+ +.....+++.|
T Consensus 266 ~aL~~l~~-----------------~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~ 328 (528)
T 4b8j_A 266 WALSYLSD-----------------GTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQ 328 (528)
T ss_dssp HHHHHHTS-----------------SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTT
T ss_pred HHHHHHHc-----------------CCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 99999996 6666677888999999999999999999999999999999997 44556677999
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041050 367 ALWELVRISRDCSREDIRSLAHRTLSS 393 (408)
Q Consensus 367 ~i~~L~~ll~~~~~~~~~~~A~~~L~~ 393 (408)
+++.|+.++.+.....++..|.++|.+
T Consensus 329 ~l~~L~~lL~~~~~~~v~~~A~~~L~n 355 (528)
T 4b8j_A 329 ALPCLLSLLTQNLKKSIKKEACWTISN 355 (528)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 999999999976456666667666544
No 13
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.95 E-value=1.2e-26 Score=247.32 Aligned_cols=252 Identities=14% Similarity=0.121 Sum_probs=210.8
Q ss_pred HHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC
Q 041050 134 TKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNA 213 (408)
Q Consensus 134 ~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~ 213 (408)
+.+++.|++|.|+.+++++++.+|..|+|+|+||+.+++++..+++.|++|+|+.+|.+ .++..++.|+|+|+||+.+.
T Consensus 489 ~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s-~~~~~k~~Aa~AL~nL~~~~ 567 (810)
T 3now_A 489 TVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALE-GTEKGKRHATQALARIGITI 567 (810)
T ss_dssp HHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcc-CCHHHHHHHHHHHHHHhcCC
Confidence 68899999999999999999999999999999999998999999999999999999985 57789999999999998752
Q ss_pred hhhHHHH---HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHH
Q 041050 214 EANQELI---MAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARG 289 (408)
Q Consensus 214 ~~~~~~i---~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~a 289 (408)
+ ....+ ...|++|+|+.+|....+......++++|.||+ .++.++..+++.|+++.|+.++.++++.+++.|+++
T Consensus 568 ~-p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~ 646 (810)
T 3now_A 568 N-PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQC 646 (810)
T ss_dssp C-HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHH
T ss_pred C-hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 2 22111 124699999999964445555678999999999 557889999999999999999999999999999999
Q ss_pred HHHhhccchhhhhHHHhhhhhccCChhhHHHHHh-cCcHHHHHHhccCCCHHHHHHHHHHHHHHcc-CchhHHHHHh-CC
Q 041050 290 IANFAKCESRAATQVRFIRCTATGVKSGRSLLIE-DGALPWIVQNANNEAAPIRRHIELALCHLAQ-HEVNAREMIS-GG 366 (408)
Q Consensus 290 L~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~-~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~-~~~~~~~l~~-~g 366 (408)
|+||+. +++.+..+.+ .|+++.|+.++.+++.+++..|+|+|+|++. ++...+.+++ .|
T Consensus 647 L~NLa~------------------~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g 708 (810)
T 3now_A 647 LCNLVM------------------SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIAS 708 (810)
T ss_dssp HHHHTT------------------SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTT
T ss_pred HHHHhC------------------ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 999994 4556666775 7899999999999999999999999999999 5777888888 99
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHH----hccHhhHHHHHhhhh
Q 041050 367 ALWELVRISRDCSREDIRSLAHRTL----SSSLTFRAEMRRLRI 406 (408)
Q Consensus 367 ~i~~L~~ll~~~~~~~~~~~A~~~L----~~~~~~~~~~~~~~~ 406 (408)
+++.|++++.+.+. .++..|.+++ ..++.....+...|+
T Consensus 709 ~I~~Lv~LL~s~d~-~vq~~A~~aL~NL~~~s~e~~~~l~e~G~ 751 (810)
T 3now_A 709 WLDILHTLIANPSP-AVQHRGIVIILNMINAGEEIAKKLFETDI 751 (810)
T ss_dssp HHHHHHHHHTCSSH-HHHHHHHHHHHHHHTTCHHHHHHHHTSTH
T ss_pred CHHHHHHHHCCCCH-HHHHHHHHHHHHHHhCCHHHHHHHHHCCC
Confidence 99999999996544 4444555443 444555666666553
No 14
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=234.27 Aligned_cols=268 Identities=19% Similarity=0.212 Sum_probs=215.1
Q ss_pred hhhhhc-CCCCchHHHHHHhcCH----------HHHHHhhcCCC--HH-----HHH-------HHHHHHHHHcCCchhHH
Q 041050 121 QFRDSG-NGQKAPITKLFEQVGL----------HKILSLLESED--AN-----VRI-------HAVKVVANLAAEEANQE 175 (408)
Q Consensus 121 ~~l~~l-s~~~~~~~~l~~~~~v----------~~Ll~lL~s~~--~~-----v~~-------~A~~aL~nLa~~~~~~~ 175 (408)
+-+.++ +++.+..+...+.+.+ +.+++++.+.+ .+ +++ +|+|+|+|++.++++|.
T Consensus 104 ~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~ 183 (458)
T 3nmz_A 104 AALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRH 183 (458)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHH
Confidence 344555 4565555665566655 56667776542 22 444 99999999999999999
Q ss_pred HHHHhCCHHHHHHHHcC----------CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCc-HHHHHHHhhcCCCHHHHHH
Q 041050 176 KIVEAGGLSSLLMLLRS----------FEDETIRRVAAGAIANLAMNAEANQELIMAQGG-ISLLSTTAADAEDPQTLRM 244 (408)
Q Consensus 176 ~i~~~g~i~~L~~lL~~----------~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~-i~~Lv~lL~~~~~~~v~~~ 244 (408)
.|++.||+++|+.+|.. +.++.+++.|+|+|.||+.+++.++..+...+| +|.|+.+| .+++++++..
T Consensus 184 ~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~ 262 (458)
T 3nmz_A 184 AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQV 262 (458)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHH
T ss_pred HHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHH
Confidence 99999999999999942 134778999999999999985667777876656 99999999 4688999999
Q ss_pred HHHHHHHHhC--CchhHHHHHhcccHHHHHHhh-cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHH
Q 041050 245 VAGAIANLCG--NDKLQMKLRSEGGIRALLGMV-RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLL 321 (408)
Q Consensus 245 a~~aL~nL~~--~~~~~~~i~~~g~l~~L~~lL-~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i 321 (408)
++++|.||+. ++.++..+.+.|+++.|+.+| +++++.+++.|+++|+||+. ++++.+..+
T Consensus 263 A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~-----------------~~~~nk~~I 325 (458)
T 3nmz_A 263 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA-----------------HCTENKADI 325 (458)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH-----------------HCHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHcc-----------------CCHHHHHHH
Confidence 9999999995 578999999999999999975 67789999999999999995 466667777
Q ss_pred H-hcCcHHHHHHhccCCCH----HHHHHHHHHHHHHcc----CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHH--HH
Q 041050 322 I-EDGALPWIVQNANNEAA----PIRRHIELALCHLAQ----HEVNAREMISGGALWELVRISRDCSREDIRSLAH--RT 390 (408)
Q Consensus 322 ~-~~g~l~~Lv~lL~~~~~----~v~~~a~~aL~~La~----~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~--~~ 390 (408)
. ..|++|.|+.++.++++ +++..|+++|+||+. +++++..+++.|+++.|+.++.+.+.+....++. .-
T Consensus 326 ~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~n 405 (458)
T 3nmz_A 326 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 405 (458)
T ss_dssp HHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 7 78999999999987654 499999999999995 6778888889999999999999766554444433 33
Q ss_pred Hh-ccHhhHHHHHhhhh
Q 041050 391 LS-SSLTFRAEMRRLRI 406 (408)
Q Consensus 391 L~-~~~~~~~~~~~~~~ 406 (408)
+. .++..+..+.+.|+
T Consensus 406 La~~~~~~~~~i~~~G~ 422 (458)
T 3nmz_A 406 LSARNPKDQEALWDMGA 422 (458)
T ss_dssp HHSSCHHHHHHHHHHTH
T ss_pred HHcCCHHHHHHHHHCCC
Confidence 33 46788888888875
No 15
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.95 E-value=6.6e-26 Score=230.17 Aligned_cols=260 Identities=18% Similarity=0.228 Sum_probs=203.1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH
Q 041050 141 GLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL 219 (408)
Q Consensus 141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 219 (408)
.+|.++.+|++++++++..|+++|.+|+. ++.++..+++.|++|.|+.+|.+ +++.++..|+++|.||+.++++++..
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 58999999999999999999999999998 56678899999999999999994 78899999999999999977999999
Q ss_pred HHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhc--------C--------CCHHHH
Q 041050 220 IMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVR--------C--------GHPDVL 283 (408)
Q Consensus 220 i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~--------~--------~~~~v~ 283 (408)
|++.||+|.|+.+|.++.++++++.++|+|+||+.++.++..+++ |+++.|+.++. + .++.++
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 999999999999996578899999999999999988999999999 99999999992 2 356788
Q ss_pred HHHHHHHHHhhccchhhhhHHH---hh---hhhccC--------------------------------------------
Q 041050 284 SQVARGIANFAKCESRAATQVR---FI---RCTATG-------------------------------------------- 313 (408)
Q Consensus 284 ~~a~~aL~nL~~~~~~~~~~~~---~~---i~~~~~-------------------------------------------- 313 (408)
+.|+|+|+||+.+ ++.+..+. |. +..+..
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 8999999999964 44433333 21 111000
Q ss_pred --------------------------------ChhhHHHHHhcCcHHHHHHhccC-CCHHHHHHHHHHHHHHccCchh--
Q 041050 314 --------------------------------VKSGRSLLIEDGALPWIVQNANN-EAAPIRRHIELALCHLAQHEVN-- 358 (408)
Q Consensus 314 --------------------------------~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v~~~a~~aL~~La~~~~~-- 358 (408)
++.+.+.+++.|+++.|+.++.+ +++.+++.|+|+|+|++.+...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 11122334455667778887754 4688999999999999986422
Q ss_pred --H-HHHH-hCCcHHHHHHHHhcCCHHHHHHHHH--HHHhccHhhHHHHHh
Q 041050 359 --A-REMI-SGGALWELVRISRDCSREDIRSLAH--RTLSSSLTFRAEMRR 403 (408)
Q Consensus 359 --~-~~l~-~~g~i~~L~~ll~~~~~~~~~~~A~--~~L~~~~~~~~~~~~ 403 (408)
. +.++ +.|+++.|++++.+.+.+-.+.++. .-++.++..+..+..
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~ 370 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN 370 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 1 3344 7999999999999776544444443 334455555555544
No 16
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.95 E-value=6.1e-27 Score=249.61 Aligned_cols=259 Identities=14% Similarity=0.125 Sum_probs=222.2
Q ss_pred chhhhhhcCCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHH---HHhCCHHHHHHHHcCCCC
Q 041050 119 HSQFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKI---VEAGGLSSLLMLLRSFED 195 (408)
Q Consensus 119 ~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i---~~~g~i~~L~~lL~~~~~ 195 (408)
..+.+-++++..++...+++.|++|+|+.+|+++++..+..|+++|.||+.+......+ ...|++|+|+.+|.++.+
T Consensus 515 Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~ 594 (810)
T 3now_A 515 IARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCT 594 (810)
T ss_dssp HHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSC
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCc
Confidence 35566777777788889999999999999999999999999999999998732222111 124589999999985445
Q ss_pred HHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHh-cccHHHHHHh
Q 041050 196 ETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRS-EGGIRALLGM 274 (408)
Q Consensus 196 ~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~-~g~l~~L~~l 274 (408)
...+..|+++|.||+..++.++..+++.||++.|+.+|. ++++.+++.|+++|+||+.+++.+..+.+ .|+++.|+.+
T Consensus 595 ~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~-s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~L 673 (810)
T 3now_A 595 ALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM-EDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALL 673 (810)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH-SCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHH
Confidence 555668999999999987899999999999999999995 56789999999999999988888888885 7899999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHh-cCcHHHHHHhccCCCHHHHHHHHHHHHHHc
Q 041050 275 VRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIE-DGALPWIVQNANNEAAPIRRHIELALCHLA 353 (408)
Q Consensus 275 L~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~-~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La 353 (408)
+.+++..+++.|+|+|+||+. +++...+.+++ .|++|.|+.++.+++.+++..|+|+|+|++
T Consensus 674 L~s~d~~vq~~Aa~ALanLt~-----------------~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 674 CEDEDEETATACAGALAIITS-----------------VSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMI 736 (810)
T ss_dssp GGCSSHHHHHHHHHHHHHHHH-----------------HCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhC-----------------CCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999996 67888888888 899999999999999999999999999998
Q ss_pred cC-chhHHHHHhCCcHHHHHHHHhcC--CHHHHHHHHHHHHhccH
Q 041050 354 QH-EVNAREMISGGALWELVRISRDC--SREDIRSLAHRTLSSSL 395 (408)
Q Consensus 354 ~~-~~~~~~l~~~g~i~~L~~ll~~~--~~~~~~~~A~~~L~~~~ 395 (408)
.+ .+++..+++.|+++.|+++++.+ .+..+...|..+|..-.
T Consensus 737 ~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 737 NAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp TTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence 75 56788899999999999999865 35568888887776543
No 17
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=6.8e-26 Score=210.51 Aligned_cols=207 Identities=23% Similarity=0.352 Sum_probs=191.1
Q ss_pred CCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHH
Q 041050 129 QKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIA 207 (408)
Q Consensus 129 ~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~ 207 (408)
..++...+++.|++|.|+.+|+++++.++..|+++|+|++. +++++..+++.|+++.|+.+|.+ +++.++..|+++|+
T Consensus 43 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~ 121 (252)
T 4db8_A 43 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALS 121 (252)
T ss_dssp HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHH
T ss_pred CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence 45566789999999999999999999999999999999998 79999999999999999999995 68999999999999
Q ss_pred HhccCChhhH-HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHH
Q 041050 208 NLAMNAEANQ-ELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQ 285 (408)
Q Consensus 208 nLa~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~ 285 (408)
||+.+ +..+ ..+++.|+++.|+.+| .++++.++..++++|+||+ .++..+..+.+.|+++.|+.++.++++.++..
T Consensus 122 ~l~~~-~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~ 199 (252)
T 4db8_A 122 NIASG-GNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 199 (252)
T ss_dssp HHTTS-CHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHH
T ss_pred HhhcC-CchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHH
Confidence 99999 6666 8999999999999999 5678999999999999999 57788888899999999999999999999999
Q ss_pred HHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 286 VARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 286 a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
|+++|+||+. +++..+..+.+.|+++.|+.++.+++++++..|+++|++|+.+
T Consensus 200 a~~~L~~l~~-----------------~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~~ 252 (252)
T 4db8_A 200 ALWALSNIAS-----------------GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252 (252)
T ss_dssp HHHHHHHHTT-----------------SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC--
T ss_pred HHHHHHHHhc-----------------CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence 9999999996 7888888999999999999999999999999999999999863
No 18
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.94 E-value=2e-25 Score=201.76 Aligned_cols=201 Identities=22% Similarity=0.333 Sum_probs=183.1
Q ss_pred HHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh
Q 041050 136 LFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE 214 (408)
Q Consensus 136 l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~ 214 (408)
-...++.+.|+.+|++++++++..|+++|.+++. ++.++..+++.|+++.|+.+|.+ +++.++..|+++|+||+.+++
T Consensus 8 ~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 8 HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp -----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCH
T ss_pred ccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCc
Confidence 3456678999999999999999999999999995 78999999999999999999995 689999999999999997659
Q ss_pred hhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 041050 215 ANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANF 293 (408)
Q Consensus 215 ~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL 293 (408)
.++..+++.|+++.|+.+| .++++.++..++++|+||+ .++..+..+.+.|+++.|+.++.++++.++..|+++|.||
T Consensus 87 ~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998 5678999999999999999 6778888899999999999999999999999999999999
Q ss_pred hccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 294 AKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 294 ~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
+. ++++.+..+.+.|+++.|++++.++++++++.|+++|.+|+.+
T Consensus 166 ~~-----------------~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 166 AS-----------------GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HT-----------------SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred Hc-----------------CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 96 6688888999999999999999999999999999999999864
No 19
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.94 E-value=3.3e-25 Score=229.11 Aligned_cols=269 Identities=18% Similarity=0.225 Sum_probs=215.4
Q ss_pred hhhhhhcCC--CCchHHHHHHhcCHHHHHHhhcC-CCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHc-----
Q 041050 120 SQFRDSGNG--QKAPITKLFEQVGLHKILSLLES-EDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLR----- 191 (408)
Q Consensus 120 ~~~l~~ls~--~~~~~~~l~~~~~v~~Ll~lL~s-~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~----- 191 (408)
..-+.+++. ..++...+++.|+||.|+.+|++ .+.++++.|+++|+||+..+.++..|++ +|+|.|+.++.
T Consensus 111 a~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg 189 (584)
T 3l6x_A 111 CGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSG 189 (584)
T ss_dssp HHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHC
T ss_pred HHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccc
Confidence 444577765 36888899999999999999996 6889999999999999999999999996 58999999871
Q ss_pred ------------CCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcH-HHHHHHhh------------------------
Q 041050 192 ------------SFEDETIRRVAAGAIANLAMNAEANQELIMAQGGI-SLLSTTAA------------------------ 234 (408)
Q Consensus 192 ------------~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i-~~Lv~lL~------------------------ 234 (408)
+..++.++..|+++|.||+.+++.++..+++.+|+ +.|+.++.
T Consensus 190 ~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs 269 (584)
T 3l6x_A 190 WEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269 (584)
T ss_dssp CC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhh
Confidence 12367999999999999999867778888876554 45555432
Q ss_pred -------------------------------------------------cCCCHHHHHHHHHHHHHHh-CC----chhHH
Q 041050 235 -------------------------------------------------DAEDPQTLRMVAGAIANLC-GN----DKLQM 260 (408)
Q Consensus 235 -------------------------------------------------~~~~~~v~~~a~~aL~nL~-~~----~~~~~ 260 (408)
.+..+.+++.|+++|+||| ++ ..++.
T Consensus 270 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~ 349 (584)
T 3l6x_A 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRS 349 (584)
T ss_dssp TTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHH
T ss_pred ccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHH
Confidence 2345677788889999997 33 23455
Q ss_pred HHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC---
Q 041050 261 KLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE--- 337 (408)
Q Consensus 261 ~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~--- 337 (408)
.+.+.++++.|+.+|.++++.+++.|+++|+||+. ++..+..| ..|++|.|+++|.++
T Consensus 350 ~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~------------------~~~~~~~I-~~g~ip~LV~LL~~~~~~ 410 (584)
T 3l6x_A 350 ALRQEKALSAIADLLTNEHERVVKAASGALRNLAV------------------DARNKELI-GKHAIPNLVKNLPGGQQN 410 (584)
T ss_dssp HHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHT------------------TCSCHHHH-HHHHHHHHHHTSSSSSCS
T ss_pred HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhC------------------ChhHHHHH-HhCCHHHHHHHhcCCccc
Confidence 66678999999999999999999999999999995 34455545 779999999999876
Q ss_pred -----CHHHHHHHHHHHHHHccC-chhHHHHHhCCcHHHHHHHHhcC-CHHHHHHHHH---HHHhccHhhHHHHHhhhhc
Q 041050 338 -----AAPIRRHIELALCHLAQH-EVNAREMISGGALWELVRISRDC-SREDIRSLAH---RTLSSSLTFRAEMRRLRIE 407 (408)
Q Consensus 338 -----~~~v~~~a~~aL~~La~~-~~~~~~l~~~g~i~~L~~ll~~~-~~~~~~~~A~---~~L~~~~~~~~~~~~~~~~ 407 (408)
..++...|+++|+|++.. +++++.+++.|+++.|+.++++. ..+.+.+.|. ..+-.+...+..+++.|..
T Consensus 411 ~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G~~ 490 (584)
T 3l6x_A 411 SSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGWK 490 (584)
T ss_dssp GGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTTCC
T ss_pred ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcCCC
Confidence 468899999999999765 77888889999999999999975 2344444554 5566777788888888765
Q ss_pred C
Q 041050 408 F 408 (408)
Q Consensus 408 ~ 408 (408)
|
T Consensus 491 ~ 491 (584)
T 3l6x_A 491 K 491 (584)
T ss_dssp G
T ss_pred H
Confidence 3
No 20
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=5.6e-25 Score=203.29 Aligned_cols=216 Identities=24% Similarity=0.396 Sum_probs=196.9
Q ss_pred hhhhcCC-CCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCC-chhHHHHHHhCCHHHHHHHHcCCCCHHHH
Q 041050 122 FRDSGNG-QKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSLLMLLRSFEDETIR 199 (408)
Q Consensus 122 ~l~~ls~-~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~v~ 199 (408)
.+.++.. ..++...+++.|+++.|+.++++++++++..|+++|++|+.. +.++..+++.|+++.|+.+|.+ +++.++
T Consensus 25 ~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~ 103 (252)
T 4hxt_A 25 DLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQ 103 (252)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SSHHHH
T ss_pred HHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcC-CCHHHH
Confidence 3444433 335778889999999999999999999999999999999995 9999999999999999999994 789999
Q ss_pred HHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCC
Q 041050 200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCG 278 (408)
Q Consensus 200 ~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~ 278 (408)
..|+++|+||+..++.++..+++.|+++.|+.++ .++++.++..++++|+||+ .++..+..+.+.|+++.|+.++.++
T Consensus 104 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~ 182 (252)
T 4hxt_A 104 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST 182 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC
Confidence 9999999999965599999999999999999998 5678999999999999999 5677778899999999999999999
Q ss_pred CHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc
Q 041050 279 HPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE 356 (408)
Q Consensus 279 ~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 356 (408)
++.++..|+++|.|++. +++..+..+.+.|+++.|+.++++++++++..|+++|+|++.+.
T Consensus 183 ~~~v~~~a~~~L~~l~~-----------------~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 183 DSEVQKEAARALANIAS-----------------GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp CHHHHHHHHHHHHHHTT-----------------SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHc-----------------CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 99999999999999996 78888889999999999999999999999999999999999764
No 21
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.94 E-value=1.4e-25 Score=206.69 Aligned_cols=196 Identities=19% Similarity=0.286 Sum_probs=176.5
Q ss_pred CHHHHHHhhcCCCH--HHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhH
Q 041050 141 GLHKILSLLESEDA--NVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQ 217 (408)
Q Consensus 141 ~v~~Ll~lL~s~~~--~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~ 217 (408)
.+|.++++|.++++ +++..|+++|.+|+. +++++..|++.||||+|+.+|.+ +++.++..|+|+|.||+.++++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHH
Confidence 48999999999887 899999999999997 88999999999999999999995 789999999999999999669999
Q ss_pred HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhc----------------CCCHH
Q 041050 218 ELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVR----------------CGHPD 281 (408)
Q Consensus 218 ~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~----------------~~~~~ 281 (408)
..|++.||||.|+.+|.++.++++++.++++|+||+..+.++..|.+ +++++|+.++. ..+++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999997677899999999999999999999999987 47899988652 13679
Q ss_pred HHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhc-CcHHHHHHhccCC------CHHHHHHHHHHHHHHcc
Q 041050 282 VLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIED-GALPWIVQNANNE------AAPIRRHIELALCHLAQ 354 (408)
Q Consensus 282 v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~-g~l~~Lv~lL~~~------~~~v~~~a~~aL~~La~ 354 (408)
++.+|+++|+||+. .+++.|..|.+. |+|+.|+.++++. +...+++|+.+|.||+.
T Consensus 167 v~~na~~~L~nLss-----------------~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 167 IFYNVTGCLRNMSS-----------------AGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHHTT-----------------SCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhc-----------------CCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 99999999999996 778899999975 6789999999752 66789999999999987
Q ss_pred C
Q 041050 355 H 355 (408)
Q Consensus 355 ~ 355 (408)
.
T Consensus 230 ~ 230 (233)
T 3tt9_A 230 Q 230 (233)
T ss_dssp C
T ss_pred h
Confidence 5
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.94 E-value=7.2e-24 Score=218.54 Aligned_cols=244 Identities=15% Similarity=0.236 Sum_probs=215.0
Q ss_pred CchHHHHHHhcCHHHHHHhhcCC-CHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHH
Q 041050 130 KAPITKLFEQVGLHKILSLLESE-DANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIA 207 (408)
Q Consensus 130 ~~~~~~l~~~~~v~~Ll~lL~s~-~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~ 207 (408)
.+++..+++.|++|.|+.+|.++ ++.++..|+++|++++. .+..+..+++.|++|.|+.+|.+ +++.++..|+++|+
T Consensus 120 ~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~vr~~A~~aL~ 198 (530)
T 1wa5_B 120 RPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-GSVEVKEQAIWALG 198 (530)
T ss_dssp SCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH-CCHHHHHHHHHHHH
T ss_pred CccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence 56678889999999999999987 89999999999999998 67888899999999999999995 68999999999999
Q ss_pred HhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCc-hhHHHHHhcccHHHHHHhhcCCCHHHHHHH
Q 041050 208 NLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGND-KLQMKLRSEGGIRALLGMVRCGHPDVLSQV 286 (408)
Q Consensus 208 nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~-~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a 286 (408)
||+.+++.++..++..|+++.|+.++.+ .++.++..++++|+||+.+. .........++++.|+.++.++++.++..+
T Consensus 199 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a 277 (530)
T 1wa5_B 199 NVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDA 277 (530)
T ss_dssp HHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHH
T ss_pred HHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHH
Confidence 9999878999999999999999999954 88999999999999999543 444455568999999999999999999999
Q ss_pred HHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc-hhHHHHHhC
Q 041050 287 ARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE-VNAREMISG 365 (408)
Q Consensus 287 ~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~-~~~~~l~~~ 365 (408)
+++|.+|+. +.++....+.+.|+++.|+.++.++++.++..|+++|++++.+. .....+++.
T Consensus 278 ~~~L~~L~~-----------------~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 340 (530)
T 1wa5_B 278 CWAISYLSD-----------------GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINA 340 (530)
T ss_dssp HHHHHHHHS-----------------SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHhC-----------------CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 999999996 66777788889999999999999999999999999999999874 455667799
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041050 366 GALWELVRISRDCSREDIRSLAHRTLSS 393 (408)
Q Consensus 366 g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 393 (408)
|+++.|+.++.+. +..++..|.++|.+
T Consensus 341 ~~l~~L~~lL~~~-~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 341 GVLPALRLLLSSP-KENIKKEACWTISN 367 (530)
T ss_dssp THHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 9999999999976 45566666666544
No 23
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.93 E-value=3e-24 Score=221.11 Aligned_cols=309 Identities=17% Similarity=0.198 Sum_probs=243.2
Q ss_pred hhhHHHHHHHHhhhhhhhHHHHH-HHhhhhccc-----------c----cccccccc------cchhhhhhcCC-CCchH
Q 041050 77 RKLEEEIVILRSQLLQLTFEADQ-MQKCLERGE-----------F----GNTFTGLD------KHSQFRDSGNG-QKAPI 133 (408)
Q Consensus 77 ~~~~~~~~~l~~~l~~~~~~~~~-~r~~~~~~~-----------~----~~~~~~~~------~~~~~l~~ls~-~~~~~ 133 (408)
+.+...+..|.+..++....+.+ .++.+.... . ...+...+ .....+.++.. ..++.
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 45666777777776666666655 445444321 1 11221111 12334455533 45667
Q ss_pred HHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccC
Q 041050 134 TKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMN 212 (408)
Q Consensus 134 ~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~ 212 (408)
..+++.|++|.|+.+|.++++.++..|+++|+||+. .+.++..+.+.|++++|+.+|..+.++.++..|+|+|+||+..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 778888999999999999999999999999999998 5788999999999999999996567899999999999999998
Q ss_pred ChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHH
Q 041050 213 AEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG-NDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIA 291 (408)
Q Consensus 213 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~-~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~ 291 (408)
..........|+++.|+.++ .++++.++..++++|+||+. ++.....+.+.|+++.|+.+|.++++.++..|+++|+
T Consensus 234 -~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~ 311 (528)
T 4b8j_A 234 -KPQPSFEQTRPALPALARLI-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG 311 (528)
T ss_dssp -SSCCCHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred -CCCCcHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHH
Confidence 44445556689999999998 56889999999999999994 4455578889999999999999999999999999999
Q ss_pred HhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC-CHHHHHHHHHHHHHHccC-chhHHHHHhCCcHH
Q 041050 292 NFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE-AAPIRRHIELALCHLAQH-EVNAREMISGGALW 369 (408)
Q Consensus 292 nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~a~~aL~~La~~-~~~~~~l~~~g~i~ 369 (408)
||+. +++.....+++.|++|.|+.++.++ ++.++..|+|+|+|++.+ ++....+++.|+++
T Consensus 312 nl~~-----------------~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~ 374 (528)
T 4b8j_A 312 NIVT-----------------GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIG 374 (528)
T ss_dssp HHTT-----------------SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHH
T ss_pred HHHc-----------------CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHH
Confidence 9997 7888888899999999999999998 999999999999999986 45567788999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----cHhhHHHHHhhh
Q 041050 370 ELVRISRDCSREDIRSLAHRTLSS-----SLTFRAEMRRLR 405 (408)
Q Consensus 370 ~L~~ll~~~~~~~~~~~A~~~L~~-----~~~~~~~~~~~~ 405 (408)
.|+.++.+.+ ..++..|.++|.+ .+.....+...|
T Consensus 375 ~L~~lL~~~~-~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~ 414 (528)
T 4b8j_A 375 PLVNLLQTAE-FDIKKEAAWAISNATSGGSHDQIKYLVSEG 414 (528)
T ss_dssp HHHHHHHHSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred HHHHHHhcCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHCC
Confidence 9999999764 4455555544432 344444444433
No 24
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.93 E-value=1.8e-24 Score=206.95 Aligned_cols=236 Identities=17% Similarity=0.166 Sum_probs=198.1
Q ss_pred HHHHHHhhcCCC------------HHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHH-HHcCCCCHHHHHHHHHHHHH
Q 041050 142 LHKILSLLESED------------ANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLM-LLRSFEDETIRRVAAGAIAN 208 (408)
Q Consensus 142 v~~Ll~lL~s~~------------~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~-lL~~~~~~~v~~~A~~aL~n 208 (408)
++..+..|.++. .+-+..|+..|.+++.+.+++..+++.||+|+|+. +|. ++++.++..|+|+|+|
T Consensus 30 mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~-s~~~~vr~~Aa~~Lg~ 108 (296)
T 1xqr_A 30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLE-AGAAGLRWRAAQLIGT 108 (296)
T ss_dssp HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTT-CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHc-CCCHHHHHHHHHHHHH
Confidence 466677777652 35788899999999998889999999999999999 998 4789999999999999
Q ss_pred hccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHH
Q 041050 209 LAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVA 287 (408)
Q Consensus 209 La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~ 287 (408)
++.+++..|..+++.||+|.|+.+|.+++++.+++.|+|+|+||+ +++...+.+.+.|+++.|+.+|+++++.++..|+
T Consensus 109 ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~ 188 (296)
T 1xqr_A 109 CSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSA 188 (296)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 999889999999999999999999976668899999999999999 6777788899999999999999999999999999
Q ss_pred HHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCC-
Q 041050 288 RGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGG- 366 (408)
Q Consensus 288 ~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g- 366 (408)
|+|+||+. ++++.+..+++.|+++.|+.+|.++++.++..|+.+|++|+.+.......+..+
T Consensus 189 ~aLs~L~~-----------------~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~ 251 (296)
T 1xqr_A 189 FLLQNLLV-----------------GHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPE 251 (296)
T ss_dssp HHHHHHHH-----------------HCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGG
T ss_pred HHHHHHHh-----------------CChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccH
Confidence 99999997 788889999999999999999999999999999999999999854433333322
Q ss_pred --cHHHH---HHHHhcCC-HHHHHHHHHHHHhccH
Q 041050 367 --ALWEL---VRISRDCS-REDIRSLAHRTLSSSL 395 (408)
Q Consensus 367 --~i~~L---~~ll~~~~-~~~~~~~A~~~L~~~~ 395 (408)
....| ++-++..+ .+++...|.+++..++
T Consensus 252 ~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 252 LGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp GCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 22222 22233232 4567777887776544
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.93 E-value=1.5e-23 Score=214.90 Aligned_cols=284 Identities=15% Similarity=0.155 Sum_probs=237.6
Q ss_pred hhhhhcCCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHH
Q 041050 121 QFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIR 199 (408)
Q Consensus 121 ~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~ 199 (408)
..+.+++...++...+++.|++|.|+.+|+++++.++..|+++|.||+. ++..+..+++.|++|.|+.++.+ +++.++
T Consensus 82 ~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~ 160 (529)
T 1jdh_A 82 GTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFL 160 (529)
T ss_dssp HHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-CCHHHH
T ss_pred HHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc-CCHHHH
Confidence 3445566666688889999999999999999999999999999999998 57788889999999999999995 688999
Q ss_pred HHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCC
Q 041050 200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGH 279 (408)
Q Consensus 200 ~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~ 279 (408)
..++.+|.+++..+++++..+.+.|+++.|+.++.+.+++.....++.+|+||+.++.++..+.+.|+++.|+.++.+++
T Consensus 161 ~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~ 240 (529)
T 1jdh_A 161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 240 (529)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCC
Confidence 99999999999876999999999999999999998877788888999999999999999999999999999999999889
Q ss_pred HHHHHHHHHHHHHhhcc---------------------chhhhhHHHhhhhhccC-ChhhHHHHHhcCcHHHHHHhccC-
Q 041050 280 PDVLSQVARGIANFAKC---------------------ESRAATQVRFIRCTATG-VKSGRSLLIEDGALPWIVQNANN- 336 (408)
Q Consensus 280 ~~v~~~a~~aL~nL~~~---------------------~~~~~~~~~~~i~~~~~-~~~~~~~i~~~g~l~~Lv~lL~~- 336 (408)
+.++..++|+|.||+.. +++.+....+++++++. +++.+..+.+.|+++.|++++.+
T Consensus 241 ~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~ 320 (529)
T 1jdh_A 241 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 320 (529)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHcc
Confidence 99999999999999853 12223334455666654 46799999999999999999975
Q ss_pred -CCHHHHHHHHHHHHHHccCc-h---hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH---hccHhhHHHHHhhh
Q 041050 337 -EAAPIRRHIELALCHLAQHE-V---NAREMISGGALWELVRISRDCSREDIRSLAHRTL---SSSLTFRAEMRRLR 405 (408)
Q Consensus 337 -~~~~v~~~a~~aL~~La~~~-~---~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L---~~~~~~~~~~~~~~ 405 (408)
++++++..|+++|+|++.+. + .+..+++.|+++.|++++.+...+.++..|.++| ...+..+..+...|
T Consensus 321 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~ 397 (529)
T 1jdh_A 321 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG 397 (529)
T ss_dssp TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcC
Confidence 34899999999999999863 2 3567889999999999999876556666666554 34455555555554
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.93 E-value=4.3e-23 Score=206.90 Aligned_cols=243 Identities=16% Similarity=0.237 Sum_probs=211.0
Q ss_pred CchHHHHHHh-cCHHHHHHhhcCC-CHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHH
Q 041050 130 KAPITKLFEQ-VGLHKILSLLESE-DANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAI 206 (408)
Q Consensus 130 ~~~~~~l~~~-~~v~~Ll~lL~s~-~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL 206 (408)
++..+.+++. |++|.|+.+|+++ ++.+|..|+++|.+++. ++++...+++.|++|.|+.+|.+ +++.++..|+++|
T Consensus 53 ~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~vr~~a~~~L 131 (450)
T 2jdq_A 53 NPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS-EFEDVQEQAVWAL 131 (450)
T ss_dssp SCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHH
T ss_pred CCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHH
Confidence 4455678887 8899999999988 89999999999999998 67788888899999999999995 6899999999999
Q ss_pred HHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCC--chhHHHHHhcccHHHHHHhhcCCCHHHHH
Q 041050 207 ANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGN--DKLQMKLRSEGGIRALLGMVRCGHPDVLS 284 (408)
Q Consensus 207 ~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~--~~~~~~i~~~g~l~~L~~lL~~~~~~v~~ 284 (408)
+|++.+++..+..+++.|+++.|+.++.++.++.++..++++|+||+.+ +.....+. .++++.|+.++.++++.++.
T Consensus 132 ~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~ 210 (450)
T 2jdq_A 132 GNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLA 210 (450)
T ss_dssp HHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHH
T ss_pred HHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHH
Confidence 9999987889999999999999999996567899999999999999943 34333333 78999999999999999999
Q ss_pred HHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchh-HHHHH
Q 041050 285 QVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVN-AREMI 363 (408)
Q Consensus 285 ~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~-~~~l~ 363 (408)
.++++|.+|+. +.++....+.+.|++|.|+.++.++++.++..|+++|++++.+.+. ...++
T Consensus 211 ~a~~~L~~l~~-----------------~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 273 (450)
T 2jdq_A 211 DACWALSYLSD-----------------GPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVIL 273 (450)
T ss_dssp HHHHHHHHHTS-----------------SSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHC-----------------CCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHH
Confidence 99999999996 5666777788999999999999999999999999999999998554 45577
Q ss_pred hCCcHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041050 364 SGGALWELVRISRDCSREDIRSLAHRTLS 392 (408)
Q Consensus 364 ~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 392 (408)
+.|+++.|+.++.++ +..++..|.++|.
T Consensus 274 ~~~~l~~L~~ll~~~-~~~vr~~a~~~L~ 301 (450)
T 2jdq_A 274 NCSALQSLLHLLSSP-KESIKKEACWTIS 301 (450)
T ss_dssp TTTHHHHHHHHTTCS-SHHHHHHHHHHHH
T ss_pred HCccHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 899999999999975 4556666666554
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.92 E-value=8.8e-23 Score=204.67 Aligned_cols=252 Identities=17% Similarity=0.185 Sum_probs=214.2
Q ss_pred hhhhhcC-CCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHH
Q 041050 121 QFRDSGN-GQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETI 198 (408)
Q Consensus 121 ~~l~~ls-~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v 198 (408)
..+.++. +..++.+.+++.|++|.|+.+|+++++.+|..|+++|++++. .+..+..+++.|+++.|+.++.++.++.+
T Consensus 87 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v 166 (450)
T 2jdq_A 87 WVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTM 166 (450)
T ss_dssp HHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHH
T ss_pred HHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHH
Confidence 3444443 344566778888999999999999999999999999999998 56789999999999999999986568999
Q ss_pred HHHHHHHHHHhccCC-hhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CchhHHHHHhcccHHHHHHhhc
Q 041050 199 RRVAAGAIANLAMNA-EANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG-NDKLQMKLRSEGGIRALLGMVR 276 (408)
Q Consensus 199 ~~~A~~aL~nLa~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~-~~~~~~~i~~~g~l~~L~~lL~ 276 (408)
+..|+++|+||+.+. +.....++ .+++|.|+.++ .++++.++..++++|.||+. .+.....+.+.|+++.|+.++.
T Consensus 167 ~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 244 (450)
T 2jdq_A 167 TRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLL-FVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM 244 (450)
T ss_dssp HHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC
Confidence 999999999999874 33333333 78999999998 56788999999999999994 5577778888999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC-
Q 041050 277 CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH- 355 (408)
Q Consensus 277 ~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~- 355 (408)
++++.++..|+++|++++. +++.....+.+.|+++.|+.++.++++.++..|+++|++++.+
T Consensus 245 ~~~~~v~~~a~~~L~~l~~-----------------~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~ 307 (450)
T 2jdq_A 245 HNDYKVVSPALRAVGNIVT-----------------GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN 307 (450)
T ss_dssp CSCHHHHHHHHHHHHHHTT-----------------SCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC
T ss_pred CCchhHHHHHHHHHHHHhh-----------------CChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999997 6777777888999999999999999999999999999999986
Q ss_pred chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041050 356 EVNAREMISGGALWELVRISRDCSREDIRSLAHRTLS 392 (408)
Q Consensus 356 ~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 392 (408)
++....+++.|+++.|+.++.+.+. +++..|.++|.
T Consensus 308 ~~~~~~~~~~~~l~~L~~~l~~~~~-~v~~~a~~~L~ 343 (450)
T 2jdq_A 308 RAQIQTVIDANIFPALISILQTAEF-RTRKEAAWAIT 343 (450)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHSCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHhcCCH-HHHHHHHHHHH
Confidence 5566778899999999999997654 45555555543
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.92 E-value=8.3e-24 Score=216.71 Aligned_cols=252 Identities=21% Similarity=0.235 Sum_probs=206.1
Q ss_pred cCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCC-CCHHHHHHHHHHHHHhccCChh--
Q 041050 140 VGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSF-EDETIRRVAAGAIANLAMNAEA-- 215 (408)
Q Consensus 140 ~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~-~~~~v~~~A~~aL~nLa~~~~~-- 215 (408)
+.+|.|+.++.+++++++..|+++|+||+. +++++..+.+.|+++.|+.+|.+. +++.++..|+++|+||+.+++.
T Consensus 266 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~ 345 (529)
T 1jdh_A 266 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 345 (529)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHH
Confidence 345666677777888999999999999988 567999999999999999999752 3489999999999999986433
Q ss_pred -hHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHH--
Q 041050 216 -NQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIAN-- 292 (408)
Q Consensus 216 -~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~n-- 292 (408)
.+..+.+.|+++.|+.+|.+..++.++..++++|+|++.++.++..+.+.|+++.|+.++.++++++++.|+|++.|
T Consensus 346 ~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~ 425 (529)
T 1jdh_A 346 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 425 (529)
T ss_dssp HHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchh
Confidence 57889999999999999966556799999999999999888889999999999999999998999999999999999
Q ss_pred hhccc--hhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHH
Q 041050 293 FAKCE--SRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWE 370 (408)
Q Consensus 293 L~~~~--~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~ 370 (408)
+.... .+......+++++++.+++.+..+.+.|+++.|+.++.+++++++..++++|++++.+++....+.+.|+++.
T Consensus 426 ~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~ 505 (529)
T 1jdh_A 426 FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 505 (529)
T ss_dssp CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHH
T ss_pred hhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHH
Confidence 43211 1112234467888888999999999999999999999999999999999999999988888888889999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 041050 371 LVRISRDCSREDIRSLAHRTLS 392 (408)
Q Consensus 371 L~~ll~~~~~~~~~~~A~~~L~ 392 (408)
|..++.+ .+++++..|.++|.
T Consensus 506 L~~l~~~-~~~~v~~~a~~aL~ 526 (529)
T 1jdh_A 506 LTELLHS-RNEGVATYAAAVLF 526 (529)
T ss_dssp HHHGGGC-SSHHHHHHHHHHHH
T ss_pred HHHHhcC-CCHHHHHHHHHHHH
Confidence 9999885 45567777777664
No 29
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=7.3e-23 Score=211.00 Aligned_cols=251 Identities=15% Similarity=0.192 Sum_probs=216.8
Q ss_pred hhhhcCC-CCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHH
Q 041050 122 FRDSGNG-QKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIR 199 (408)
Q Consensus 122 ~l~~ls~-~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~ 199 (408)
.+.++.. ..+....++..|++|.|+.+|.++++.++..|+++|+||+. .+..+..++..|+++.|+.++.+ .++.++
T Consensus 154 ~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~ 232 (530)
T 1wa5_B 154 ALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLI 232 (530)
T ss_dssp HHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHH
T ss_pred HHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHH
Confidence 3455543 34556677788999999999999999999999999999998 57889999999999999999995 788999
Q ss_pred HHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCC
Q 041050 200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCG 278 (408)
Q Consensus 200 ~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~ 278 (408)
..|+++|+||+.+...........|+++.|+.++ .++++.++..++++|.||+ .++.....+.+.|+++.|+.++.++
T Consensus 233 ~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~ 311 (530)
T 1wa5_B 233 RTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 311 (530)
T ss_dssp HHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred HHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC
Confidence 9999999999987425555666789999999998 5678999999999999999 5567788888999999999999999
Q ss_pred CHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC-ch
Q 041050 279 HPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH-EV 357 (408)
Q Consensus 279 ~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~-~~ 357 (408)
++.++..|+++|+|++. +++.....+.+.|+++.|+.++.++++.++..|+++|++++.+ ++
T Consensus 312 ~~~v~~~a~~~L~~l~~-----------------~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~ 374 (530)
T 1wa5_B 312 STLVQTPALRAVGNIVT-----------------GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 374 (530)
T ss_dssp CHHHHHHHHHHHHHHTT-----------------SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred ChhhHHHHHHHHHHHHc-----------------CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999997 7788888889999999999999999999999999999999986 55
Q ss_pred hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041050 358 NAREMISGGALWELVRISRDCSREDIRSLAHRTLS 392 (408)
Q Consensus 358 ~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 392 (408)
....+++.|+++.|+.++.+.+. .++..|.++|.
T Consensus 375 ~~~~~~~~~~l~~L~~lL~~~~~-~v~~~a~~aL~ 408 (530)
T 1wa5_B 375 QIQAVIDANLIPPLVKLLEVAEY-KTKKEACWAIS 408 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCH-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhcCCH-HHHHHHHHHHH
Confidence 66778899999999999986544 45555665543
No 30
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.92 E-value=6.1e-23 Score=216.76 Aligned_cols=283 Identities=16% Similarity=0.149 Sum_probs=234.3
Q ss_pred hhhhcCCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHH
Q 041050 122 FRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRR 200 (408)
Q Consensus 122 ~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~ 200 (408)
.+.+++...++...+++.|+++.|+.+|+++++.++..|+++|.||+. .+..+..+++.|++|.|+.+|.+ .++.++.
T Consensus 80 ~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~~~~ 158 (644)
T 2z6h_A 80 TLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLA 158 (644)
T ss_dssp HHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC-CCHHHHH
T ss_pred HHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc-CCHHHHH
Confidence 344566666688889999999999999999999999999999999998 56788888899999999999995 5788888
Q ss_pred HHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCH
Q 041050 201 VAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHP 280 (408)
Q Consensus 201 ~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~ 280 (408)
.++.+|++|+..++.++..+++.|+++.|+.++.+...+.++..++++|+||+.++.++..+++.|+++.|+.++.++++
T Consensus 159 ~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~ 238 (644)
T 2z6h_A 159 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 238 (644)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCH
Confidence 89999999997559999999999999999999987777889999999999999999999999999999999999998899
Q ss_pred HHHHHHHHHHHHhhccc---------------------hhhhhHHHhhhhhccC-ChhhHHHHHhcCcHHHHHHhccCC-
Q 041050 281 DVLSQVARGIANFAKCE---------------------SRAATQVRFIRCTATG-VKSGRSLLIEDGALPWIVQNANNE- 337 (408)
Q Consensus 281 ~v~~~a~~aL~nL~~~~---------------------~~~~~~~~~~i~~~~~-~~~~~~~i~~~g~l~~Lv~lL~~~- 337 (408)
.++..++++|.||+... .+.+....+++++++. ++..+..+.+.|+++.|+.++.+.
T Consensus 239 ~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~ 318 (644)
T 2z6h_A 239 RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 318 (644)
T ss_dssp HHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccC
Confidence 99999999999998632 2223333345666544 567889999999999999999763
Q ss_pred -CHHHHHHHHHHHHHHccCch----hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHh---ccHhhHHHHHhhh
Q 041050 338 -AAPIRRHIELALCHLAQHEV----NAREMISGGALWELVRISRDCSREDIRSLAHRTLS---SSLTFRAEMRRLR 405 (408)
Q Consensus 338 -~~~v~~~a~~aL~~La~~~~----~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~---~~~~~~~~~~~~~ 405 (408)
.++++..|+++|++|+.+.. .+..+++.|+++.|++++.+.....++..|.++|. .++..+..+...|
T Consensus 319 ~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~ 394 (644)
T 2z6h_A 319 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG 394 (644)
T ss_dssp TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcC
Confidence 37999999999999997532 33457799999999999997765667766765543 3444444444443
No 31
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=7.8e-23 Score=184.66 Aligned_cols=194 Identities=20% Similarity=0.289 Sum_probs=173.3
Q ss_pred HhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCch
Q 041050 179 EAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDK 257 (408)
Q Consensus 179 ~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~ 257 (408)
..|+.+.|+.+|. ++++.++..|+++|++|+..++.++..+++.|+++.|+.+| .++++.++..++++|+||+ .++.
T Consensus 10 ~~~~~~~l~~LL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 10 HGSELPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ---CHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred ccchhHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcH
Confidence 4567899999998 47899999999999999976699999999999999999999 4578999999999999999 7889
Q ss_pred hHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC
Q 041050 258 LQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE 337 (408)
Q Consensus 258 ~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~ 337 (408)
++..+.+.|+++.|+.+|.++++.++..|+++|+||+. ++++.+..+.+.|+++.|++++.++
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~-----------------~~~~~~~~~~~~~~i~~L~~ll~~~ 150 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-----------------GGNEQIQAVIDAGALPALVQLLSSP 150 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT-----------------SCHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHc-----------------CCHHHHHHHHHcCcHHHHHHHHcCC
Confidence 99999999999999999999999999999999999997 7788888899999999999999999
Q ss_pred CHHHHHHHHHHHHHHccC-chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041050 338 AAPIRRHIELALCHLAQH-EVNAREMISGGALWELVRISRDCSREDIRSLAHRTLS 392 (408)
Q Consensus 338 ~~~v~~~a~~aL~~La~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 392 (408)
+++++..|+++|++++.+ ++++..+.+.|+++.|++++.+. +..++..|.++|.
T Consensus 151 ~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~ 205 (210)
T 4db6_A 151 NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALE 205 (210)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 999999999999999998 66777788999999999999964 4456666666553
No 32
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.91 E-value=8.9e-23 Score=215.51 Aligned_cols=249 Identities=21% Similarity=0.244 Sum_probs=202.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCC-CHHHHHHHHHHHHHhccCCh---hh
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFE-DETIRRVAAGAIANLAMNAE---AN 216 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~-~~~v~~~A~~aL~nLa~~~~---~~ 216 (408)
++.|+.++++++++++..|+++|.+|+. ++.++..+++.|+++.|+.+|.+.. .+.++..|+++|+||+..++ ..
T Consensus 265 i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~ 344 (644)
T 2z6h_A 265 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMA 344 (644)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4444555666788888899999999988 5688999999999999999998533 37999999999999997533 45
Q ss_pred HHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHH--hh
Q 041050 217 QELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIAN--FA 294 (408)
Q Consensus 217 ~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~n--L~ 294 (408)
+..++..|+++.|+.+|.+..++.++..++++|+||+.++.++..+++.|+++.|+.++.++++++++.|+|++.| ++
T Consensus 345 q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~ 424 (644)
T 2z6h_A 345 QNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV 424 (644)
T ss_dssp HHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------C
T ss_pred HHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhc
Confidence 6778999999999999976666899999999999999888899999999999999999998888999999998888 54
Q ss_pred cc--chhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHH
Q 041050 295 KC--ESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELV 372 (408)
Q Consensus 295 ~~--~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~ 372 (408)
.. ..+......+++++++.++..+..+.+.|+++.|+.++.+++++++..|+++|++++.+++.+..+.+.|+++.|+
T Consensus 425 ~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~ 504 (644)
T 2z6h_A 425 EGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLT 504 (644)
T ss_dssp CSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHH
Confidence 21 1222334556677888889999999999999999999999999999999999999999888888888999999999
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 041050 373 RISRDCSREDIRSLAHRTL 391 (408)
Q Consensus 373 ~ll~~~~~~~~~~~A~~~L 391 (408)
+++.+. +.+++..|.++|
T Consensus 505 ~ll~~~-~~~vr~~A~~aL 522 (644)
T 2z6h_A 505 ELLHSR-NEGVATYAAAVL 522 (644)
T ss_dssp HHTTCS-CHHHHHHHHHHH
T ss_pred HHHcCC-CHHHHHHHHHHH
Confidence 999865 445666666554
No 33
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.90 E-value=1.6e-22 Score=193.50 Aligned_cols=173 Identities=23% Similarity=0.254 Sum_probs=158.0
Q ss_pred hhhhcCCCCchHHHHHHhcCHHHHHH-hhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHH
Q 041050 122 FRDSGNGQKAPITKLFEQVGLHKILS-LLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIR 199 (408)
Q Consensus 122 ~l~~ls~~~~~~~~l~~~~~v~~Ll~-lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~ 199 (408)
.+..+....++...++..||+|.|+. +|+++++.+|..|+|+|+|++. ++..+..+++.||+|+|+.+|.++.++.++
T Consensus 63 ~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~ 142 (296)
T 1xqr_A 63 LLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR 142 (296)
T ss_dssp HHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHH
T ss_pred HHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHH
Confidence 34444445567778899999999999 9999999999999999999998 788999999999999999999865578999
Q ss_pred HHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCC
Q 041050 200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCG 278 (408)
Q Consensus 200 ~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~ 278 (408)
+.|+|+|+||+.+++..++.+.+.||++.|+.+|. +.++.++..++|+|+||+ ++++.+..+++.|+++.|+.+|.++
T Consensus 143 ~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~-~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~ 221 (296)
T 1xqr_A 143 VKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ-QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE 221 (296)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCC
Confidence 99999999999887888889999999999999994 578999999999999998 7788999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhc
Q 041050 279 HPDVLSQVARGIANFAK 295 (408)
Q Consensus 279 ~~~v~~~a~~aL~nL~~ 295 (408)
++.++..|+++|.||+.
T Consensus 222 d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 222 HSPFHEHVLGALCSLVT 238 (296)
T ss_dssp CSTHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHHh
Confidence 99999999999999996
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.89 E-value=3.1e-22 Score=215.83 Aligned_cols=252 Identities=21% Similarity=0.237 Sum_probs=209.3
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCC-CCHHHHHHHHHHHHHhccCChh---
Q 041050 141 GLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSF-EDETIRRVAAGAIANLAMNAEA--- 215 (408)
Q Consensus 141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~-~~~~v~~~A~~aL~nLa~~~~~--- 215 (408)
.++.|+.+|++.+..++..|+++|.+|+. .+.++..+++.|+++.|+.+|... +.+.++..|+++|+||+..++.
T Consensus 400 ~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~ 479 (780)
T 2z6g_A 400 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEM 479 (780)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHH
Confidence 46666777778889999999999999998 568899999999999999999753 3458999999999999986343
Q ss_pred hHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHH--h
Q 041050 216 NQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIAN--F 293 (408)
Q Consensus 216 ~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~n--L 293 (408)
.+..+...|+++.|+.+|....++.++..++++|+||+.++.++..+.+.|+++.|+.+|.++++++++.++|++.| +
T Consensus 480 ~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~ 559 (780)
T 2z6g_A 480 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 559 (780)
T ss_dssp HHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CC
T ss_pred HHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchh
Confidence 46788999999999999976666799999999999999888899999999999999999998888899999999888 5
Q ss_pred hccc--hhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHH
Q 041050 294 AKCE--SRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWEL 371 (408)
Q Consensus 294 ~~~~--~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L 371 (408)
+... .+......+++++++.++..+..+.+.|+++.|+.++.++++.++..|+.+|++|+.+++.+..+.+.|+++.|
T Consensus 560 ~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L 639 (780)
T 2z6g_A 560 VEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL 639 (780)
T ss_dssp STTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHH
T ss_pred hcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHH
Confidence 4321 22344556778888889999999999999999999999999999999999999999988888888999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 041050 372 VRISRDCSREDIRSLAHRTLSS 393 (408)
Q Consensus 372 ~~ll~~~~~~~~~~~A~~~L~~ 393 (408)
++++.+. +.+++..|.++|..
T Consensus 640 ~~Ll~~~-~~~Vr~~A~~aL~~ 660 (780)
T 2z6g_A 640 TELLHSR-NEGVATYAAAVLFR 660 (780)
T ss_dssp HHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHcCC-CHHHHHHHHHHHHH
Confidence 9999865 45566666655543
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.89 E-value=2.8e-21 Score=208.37 Aligned_cols=285 Identities=16% Similarity=0.162 Sum_probs=234.8
Q ss_pred hhhhhhcCCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHH
Q 041050 120 SQFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETI 198 (408)
Q Consensus 120 ~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v 198 (408)
...+.+++....+...+++.|+++.|+.+|+++++.++..|+++|.||+. .+..+..+++.|+++.|+.+|.+ .+..+
T Consensus 214 a~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~-~~~~v 292 (780)
T 2z6g_A 214 SGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 292 (780)
T ss_dssp HHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC-CCHHH
T ss_pred HHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc-CCHHH
Confidence 34456676666777888999999999999999999999999999999998 57788888899999999999995 68889
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCC
Q 041050 199 RRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCG 278 (408)
Q Consensus 199 ~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~ 278 (408)
+..++.+|.+++..+++++..+++.|+++.|+.++...+.+.....++++|.||+.++.++..+++.|+++.|+.++.++
T Consensus 293 ~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~ 372 (780)
T 2z6g_A 293 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 372 (780)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCS
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCC
Confidence 99999999999986699999999999999999999877777788899999999999999999999999999999999988
Q ss_pred CHHHHHHHHHHHHHhhccc---------------------hhhhhHHHhhhhhccC-ChhhHHHHHhcCcHHHHHHhccC
Q 041050 279 HPDVLSQVARGIANFAKCE---------------------SRAATQVRFIRCTATG-VKSGRSLLIEDGALPWIVQNANN 336 (408)
Q Consensus 279 ~~~v~~~a~~aL~nL~~~~---------------------~~~~~~~~~~i~~~~~-~~~~~~~i~~~g~l~~Lv~lL~~ 336 (408)
++.+++.|+++|.+|+... .+.+....+++++++. ++..+..+.+.|+++.|+.++.+
T Consensus 373 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 452 (780)
T 2z6g_A 373 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 452 (780)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHc
Confidence 9999999999999998522 1223333345666544 46788889999999999999975
Q ss_pred -C-CHHHHHHHHHHHHHHccCchh----HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHh---ccHhhHHHHHhhh
Q 041050 337 -E-AAPIRRHIELALCHLAQHEVN----AREMISGGALWELVRISRDCSREDIRSLAHRTLS---SSLTFRAEMRRLR 405 (408)
Q Consensus 337 -~-~~~v~~~a~~aL~~La~~~~~----~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~---~~~~~~~~~~~~~ 405 (408)
+ ..+++..|+++|++|+.+... +..+...|+++.|++++.+.+...++..|.++|. ..+..+..+...|
T Consensus 453 ~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g 530 (780)
T 2z6g_A 453 AGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG 530 (780)
T ss_dssp HTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCC
Confidence 3 348999999999999975322 4567799999999999998776677777775544 3444444444444
No 36
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.87 E-value=6.2e-22 Score=182.35 Aligned_cols=165 Identities=19% Similarity=0.287 Sum_probs=145.7
Q ss_pred CCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHH
Q 041050 129 QKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIA 207 (408)
Q Consensus 129 ~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~ 207 (408)
..++...+++.|+||+|+++|+++++++|..|+++|.||+. +++++..|++.||||+|+.+|.++.+..+++.|+++|+
T Consensus 41 ~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~ 120 (233)
T 3tt9_A 41 KSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLW 120 (233)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 55677789999999999999999999999999999999998 78999999999999999999985568899999999999
Q ss_pred HhccCChhhHHHHHhcCcHHHHHHHhh---------------cCCCHHHHHHHHHHHHHHh-CCchhHHHHHhc-ccHHH
Q 041050 208 NLAMNAEANQELIMAQGGISLLSTTAA---------------DAEDPQTLRMVAGAIANLC-GNDKLQMKLRSE-GGIRA 270 (408)
Q Consensus 208 nLa~~~~~~~~~i~~~g~i~~Lv~lL~---------------~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~-g~l~~ 270 (408)
||+.. +.++..|++ +|+|.|+.++. ...++.++.+++++|.||+ .++++|..+++. |+++.
T Consensus 121 nLS~~-~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~ 198 (233)
T 3tt9_A 121 NLSSN-DKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDS 198 (233)
T ss_dssp HHHTS-GGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHH
T ss_pred HHHcC-hhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHH
Confidence 99998 999999987 47999987652 1247899999999999998 577999999986 56799
Q ss_pred HHHhhcC------CCHHHHHHHHHHHHHhhc
Q 041050 271 LLGMVRC------GHPDVLSQVARGIANFAK 295 (408)
Q Consensus 271 L~~lL~~------~~~~v~~~a~~aL~nL~~ 295 (408)
|+.+++. .+...+++|..+|+||+.
T Consensus 199 Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 199 LVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 9999964 255789999999999985
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.6e-20 Score=195.57 Aligned_cols=235 Identities=11% Similarity=0.121 Sum_probs=185.4
Q ss_pred hHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCH--HHHHHHHHHHHHh
Q 041050 132 PITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDE--TIRRVAAGAIANL 209 (408)
Q Consensus 132 ~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~--~v~~~A~~aL~nL 209 (408)
+...+++.|++|.|+.+++++++.+|..|+++|.||+.++.+|..++++||+++|+.+|.+..+. ..+..|+.+|++|
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL 528 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM 528 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 34567888899999999999999999999999999999999999999999999999999864332 2789999999999
Q ss_pred ccCChhhHHHHHh---cCcHHHHHHHhhcCCC------------HHH-HHHHHHHHHHHhCCc-----hhHHHHHhc-cc
Q 041050 210 AMNAEANQELIMA---QGGISLLSTTAADAED------------PQT-LRMVAGAIANLCGND-----KLQMKLRSE-GG 267 (408)
Q Consensus 210 a~~~~~~~~~i~~---~g~i~~Lv~lL~~~~~------------~~v-~~~a~~aL~nL~~~~-----~~~~~i~~~-g~ 267 (408)
+.. ......|-. .|++++|+.+|..+++ +.+ ...|+.+|.|||..+ +.+..|++. |+
T Consensus 529 lis-~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga 607 (778)
T 3opb_A 529 LIF-TNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY 607 (778)
T ss_dssp HHT-SCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHH
T ss_pred Hhc-CCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCH
Confidence 865 322222211 4899999999962111 112 668999999999554 457888885 99
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHh------cCcHHHHHHhccCCCHHH
Q 041050 268 IRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIE------DGALPWIVQNANNEAAPI 341 (408)
Q Consensus 268 l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~------~g~l~~Lv~lL~~~~~~v 341 (408)
++.|..++.+++..+++.|+++++||+. .++... ..+.+ .+.++.|+.++.+++.++
T Consensus 608 ~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~----------------~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~ 670 (778)
T 3opb_A 608 WSTIENLMLDENVPLQRSTLELISNMMS-HPLTIA----------------AKFFNLENPQSLRNFNILVKLLQLSDVES 670 (778)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTG----------------GGTSCCSSHHHHHHHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHH----------------HHHHhhcCchhhccHHHHHHHHcCCCHHH
Confidence 9999999999999999999999999994 222210 12221 224889999999999999
Q ss_pred HHHHHHHHHHHcc-CchhHHHHHhC-CcHHHHHHHHhcC-CHHHHH
Q 041050 342 RRHIELALCHLAQ-HEVNAREMISG-GALWELVRISRDC-SREDIR 384 (408)
Q Consensus 342 ~~~a~~aL~~La~-~~~~~~~l~~~-g~i~~L~~ll~~~-~~~~~~ 384 (408)
|+.|+|+|.|++. ++..+..+++. ++++.|+.++.+. ++++.+
T Consensus 671 r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~ 716 (778)
T 3opb_A 671 QRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELR 716 (778)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHH
Confidence 9999999999975 66677888876 8999999999983 344433
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1e-18 Score=183.62 Aligned_cols=252 Identities=11% Similarity=0.077 Sum_probs=192.6
Q ss_pred hhhcCCCCchHHHHHHhcC-HHHHHHhhcC-CCHHHHHHHHHHHHHHcCCch----------------------------
Q 041050 123 RDSGNGQKAPITKLFEQVG-LHKILSLLES-EDANVRIHAVKVVANLAAEEA---------------------------- 172 (408)
Q Consensus 123 l~~ls~~~~~~~~l~~~~~-v~~Ll~lL~s-~~~~v~~~A~~aL~nLa~~~~---------------------------- 172 (408)
|.+++-..+-...+....+ ++.|+.+++. ++..+...++.+|.||+..++
T Consensus 358 LaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~ 437 (778)
T 3opb_A 358 LAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGA 437 (778)
T ss_dssp HHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCT
T ss_pred HHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccc
Confidence 3444444444445555555 8999999994 888999999999999987211
Q ss_pred -----------hHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCH--
Q 041050 173 -----------NQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDP-- 239 (408)
Q Consensus 173 -----------~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-- 239 (408)
++..+++.|++|.|+.++++ .++.++..|+++|.||+.+ +.+|..+++.||++.|+.+|.+..+.
T Consensus 438 ~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S-~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~ 515 (778)
T 3opb_A 438 EKAAKEDILLFNEKYILRTELISFLKREMHN-LSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGE 515 (778)
T ss_dssp HHHHHHHHHHHHHHHTTTTTHHHHHHHHGGG-SCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CC
T ss_pred cccchHHHHHHHHHHHHHCcCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcch
Confidence 45677889999999999985 6889999999999999999 99999999999999999999654433
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHh---cccHHHHHHhhcC-CCH-------------HHHHHHHHHHHHhhccchhhhh
Q 041050 240 QTLRMVAGAIANLCGNDKLQMKLRS---EGGIRALLGMVRC-GHP-------------DVLSQVARGIANFAKCESRAAT 302 (408)
Q Consensus 240 ~v~~~a~~aL~nL~~~~~~~~~i~~---~g~l~~L~~lL~~-~~~-------------~v~~~a~~aL~nL~~~~~~~~~ 302 (408)
.++..|+++|++|....+....+-. .|++++|+.+|.. +.. .-+.+|+.||.||+.
T Consensus 516 ~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs------- 588 (778)
T 3opb_A 516 PIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLAS------- 588 (778)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhc-------
Confidence 2899999999999833322222211 3899999999972 221 126789999999996
Q ss_pred HHHhhhhhccCC----hhhHHHHHhc-CcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhH-HHHHhCC------cHHH
Q 041050 303 QVRFIRCTATGV----KSGRSLLIED-GALPWIVQNANNEAAPIRRHIELALCHLAQHEVNA-REMISGG------ALWE 370 (408)
Q Consensus 303 ~~~~~i~~~~~~----~~~~~~i~~~-g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~-~~l~~~g------~i~~ 370 (408)
.+ ++.+..++.. |++|.|..++.+++..+|+.|+++++||+.+++.. ..+...+ .++.
T Consensus 589 ----------~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~l 658 (778)
T 3opb_A 589 ----------SETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNI 658 (778)
T ss_dssp ----------CCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHH
T ss_pred ----------CCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHH
Confidence 33 3567778885 99999999999999999999999999999987764 3454322 4789
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcc
Q 041050 371 LVRISRDCSREDIRSLAHRTLSSS 394 (408)
Q Consensus 371 L~~ll~~~~~~~~~~~A~~~L~~~ 394 (408)
|+.++.+ ++.+.+.+|.++|.+.
T Consensus 659 LV~Ll~s-~D~~~r~AAagALAnL 681 (778)
T 3opb_A 659 LVKLLQL-SDVESQRAVAAIFANI 681 (778)
T ss_dssp HHHGGGC-SCHHHHHHHHHHHHHH
T ss_pred HHHHHcC-CCHHHHHHHHHHHHHh
Confidence 9999975 5556666666665543
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.62 E-value=2.1e-14 Score=147.55 Aligned_cols=246 Identities=17% Similarity=0.152 Sum_probs=191.8
Q ss_pred HhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-Cch-hHHHHHHh-CCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh
Q 041050 138 EQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEA-NQEKIVEA-GGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE 214 (408)
Q Consensus 138 ~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~-~~~~i~~~-g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~ 214 (408)
+.++++.|+.+|++.+..+|..++..|..|+. .+. +++.|... +|++.|+.+|.+ ..+.+|..|+..|.+|+.+++
T Consensus 120 ~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d-~rE~iRneallLL~~Lt~~n~ 198 (651)
T 3grl_A 120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD-SREVIRNDGVLLLQALTRSNG 198 (651)
T ss_dssp STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC-SSHHHHHHHHHHHHHHHTTCH
T ss_pred CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC-chHHHHHHHHHHHHHHhcCCH
Confidence 34579999999999999999999999999987 554 89999954 889999999994 578899999999999999989
Q ss_pred hhHHHHHhcCcHHHHHHHhhcCC---CHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCH------HHHH
Q 041050 215 ANQELIMAQGGISLLSTTAADAE---DPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHP------DVLS 284 (408)
Q Consensus 215 ~~~~~i~~~g~i~~Lv~lL~~~~---~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~------~v~~ 284 (408)
..|+.+.-+|+++.|+.++.... ...+..-++.+|.||. .|+.||..+.+.|+++.|..++..++. ....
T Consensus 199 ~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~ 278 (651)
T 3grl_A 199 AIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVT 278 (651)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHH
Confidence 99999999999999999985322 2357788999999998 889999999999999999999974432 1223
Q ss_pred H---HHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC--CHHHHHHHHHHHHHHccC-chh
Q 041050 285 Q---VARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE--AAPIRRHIELALCHLAQH-EVN 358 (408)
Q Consensus 285 ~---a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~a~~aL~~La~~-~~~ 358 (408)
+ +..++..|.. +....+ +++.++..+.+.|+++.|++++.+. ...++..|..+++.+..+ +.+
T Consensus 279 N~~~~L~iIrlLv~--~~~~~~---------~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~ 347 (651)
T 3grl_A 279 NLHLMLQLVRVLVS--PNNPPG---------ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVN 347 (651)
T ss_dssp HHHHHHHHHHHHTC--TTSCHH---------HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC--CCCCCC---------CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 3 3345555543 111111 2567899999999999999998765 788999999999999987 455
Q ss_pred HHHHHhCC---------cHHHHHHHHhcCCHHHHHHHHHHHHhccH
Q 041050 359 AREMISGG---------ALWELVRISRDCSREDIRSLAHRTLSSSL 395 (408)
Q Consensus 359 ~~~l~~~g---------~i~~L~~ll~~~~~~~~~~~A~~~L~~~~ 395 (408)
+..+.+.. .+..|+.++.+.+.-++|.+|..++.++.
T Consensus 348 Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 348 QDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp HHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 56665432 33345555666677788888876555444
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.56 E-value=1.7e-12 Score=133.39 Aligned_cols=253 Identities=15% Similarity=0.119 Sum_probs=199.8
Q ss_pred HHHHHHhcCHHHHHHhhcC--CCHHHHHHHHHHHHHHcC-Cch-----------------hHHHHH-HhCCHHHHHHHHc
Q 041050 133 ITKLFEQVGLHKILSLLES--EDANVRIHAVKVVANLAA-EEA-----------------NQEKIV-EAGGLSSLLMLLR 191 (408)
Q Consensus 133 ~~~l~~~~~v~~Ll~lL~s--~~~~v~~~A~~aL~nLa~-~~~-----------------~~~~i~-~~g~i~~L~~lL~ 191 (408)
-+..+..+|++.|+..|+. .|.++-..++.+|.++.. ++. +.+.+. +.++|+.|+.+|+
T Consensus 53 y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~ 132 (651)
T 3grl_A 53 YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE 132 (651)
T ss_dssp TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT
T ss_pred hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc
Confidence 3567788899999999984 678888999999988765 321 222333 4567999999998
Q ss_pred CCCCHHHHHHHHHHHHHhccCChh-hHHHHHhc-CcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccH
Q 041050 192 SFEDETIRRVAAGAIANLAMNAEA-NQELIMAQ-GGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGI 268 (408)
Q Consensus 192 ~~~~~~v~~~A~~aL~nLa~~~~~-~~~~i~~~-g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l 268 (408)
.++-.+|..++..|..|+.+.+. .++.|... +|++.|+.+| +++.+.++-.++..|.+|+ +|++.|+.+.-+|++
T Consensus 133 -~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL-~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaF 210 (651)
T 3grl_A 133 -EFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL-ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAF 210 (651)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG-GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred -CccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH-hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccH
Confidence 47899999999999999988677 89999955 9999999999 4566789999999999999 777888888888999
Q ss_pred HHHHHhhcCCC----HHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHH----
Q 041050 269 RALLGMVRCGH----PDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAP---- 340 (408)
Q Consensus 269 ~~L~~lL~~~~----~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~---- 340 (408)
+.|+.+++.+. ..+...|+.+|.||.+ +|+.++..|.+.|+++.|..++..++..
T Consensus 211 e~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr-----------------~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~ 273 (651)
T 3grl_A 211 ERLLDIITEEGNSDGGIVVEDCLILLQNLLK-----------------NNNSNQNFFKEGSYIQRMKPWFEVGDENSGWS 273 (651)
T ss_dssp HHHHHHHHHHTGGGSHHHHHHHHHHHHHHHT-----------------TCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCC
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHHHHHh-----------------cCHHHHHHHHHcCCHHHHHHHhCCCccccccH
Confidence 99999996543 3788899999999998 8999999999999999999999755321
Q ss_pred --HHHH---HHHHHHHHccC-------chhHHHHHhCCcHHHHHHHHhcCC-HHHHHHHHH----HHHhccHhhHHHHHh
Q 041050 341 --IRRH---IELALCHLAQH-------EVNAREMISGGALWELVRISRDCS-REDIRSLAH----RTLSSSLTFRAEMRR 403 (408)
Q Consensus 341 --v~~~---a~~aL~~La~~-------~~~~~~l~~~g~i~~L~~ll~~~~-~~~~~~~A~----~~L~~~~~~~~~~~~ 403 (408)
...+ +..++..|... ..++..+.+.|++..|++++.+.. +.+++..|. .++..++..|..+-.
T Consensus 274 ~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~ 353 (651)
T 3grl_A 274 AQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFAS 353 (651)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhh
Confidence 3333 55666666654 246778889999999999998653 455554444 567778887777654
Q ss_pred h
Q 041050 404 L 404 (408)
Q Consensus 404 ~ 404 (408)
.
T Consensus 354 ~ 354 (651)
T 3grl_A 354 V 354 (651)
T ss_dssp C
T ss_pred c
Confidence 3
No 41
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.43 E-value=1.7e-11 Score=110.30 Aligned_cols=186 Identities=16% Similarity=0.173 Sum_probs=154.0
Q ss_pred hcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH
Q 041050 139 QVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE 218 (408)
Q Consensus 139 ~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~ 218 (408)
...++.|+.+|+++++.+|..|+.+|+.+.. .++++.|+.+|. ++++.++..|+++|+.+...
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~-~~~~~vr~~a~~aL~~~~~~------ 80 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALK-DEDAWVRRAAADALGQIGDE------ 80 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT-CSCHHHHHHHHHHHHHHCCG------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHc-CCCHHHHHHHHHHHHhhCCH------
Confidence 3468999999999999999999999998754 357999999998 46899999999999998643
Q ss_pred HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccch
Q 041050 219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCES 298 (408)
Q Consensus 219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~ 298 (408)
+.++.|+.+| .++++.++..++.+|+++.. ...++.|..++.++++.++..|+++|+++..
T Consensus 81 -----~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 81 -----RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp -----GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred -----HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 4788999998 66889999999999998853 3578889999999999999999999999852
Q ss_pred hhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcC
Q 041050 299 RAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDC 378 (408)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~ 378 (408)
...++.|..++.++++.+|..|+.+|..+.. ..+++.|..++.+.
T Consensus 142 -------------------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~ 186 (211)
T 3ltm_A 142 -------------------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETG 186 (211)
T ss_dssp -------------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC
T ss_pred -------------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC
Confidence 2478899999999999999999999999953 23577888888865
Q ss_pred CHHHHHHHHHHHHhccHh
Q 041050 379 SREDIRSLAHRTLSSSLT 396 (408)
Q Consensus 379 ~~~~~~~~A~~~L~~~~~ 396 (408)
+ ..++..|..+|.....
T Consensus 187 ~-~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 187 T-GFARKVAVNYLETHKS 203 (211)
T ss_dssp C-HHHHHHHHHHHHC---
T ss_pred C-HHHHHHHHHHHHhcCC
Confidence 4 4578888877765543
No 42
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.41 E-value=1.3e-11 Score=110.08 Aligned_cols=184 Identities=16% Similarity=0.176 Sum_probs=153.1
Q ss_pred hcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH
Q 041050 139 QVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE 218 (408)
Q Consensus 139 ~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~ 218 (408)
.+..+.++++|+++++.+|..|+++|+.+.. .+.++.|+.+|. ++++.++..|+.+|+.+...
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~-~~~~~vr~~a~~~L~~~~~~------ 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALK-DEDAWVRRAAADALGQIGDE------ 75 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCCG------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHc-CCCHHHHHHHHHHHHhhCCH------
Confidence 3557899999999999999999999998754 356899999998 57899999999999988643
Q ss_pred HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccch
Q 041050 219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCES 298 (408)
Q Consensus 219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~ 298 (408)
..++.|+.+| .++++.++..++++|+++.. ...++.|..++.++++.++..|+++|+.+..
T Consensus 76 -----~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 76 -----RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp -----GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred -----HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 4788999998 56889999999999998753 3478889999999999999999999999862
Q ss_pred hhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcC
Q 041050 299 RAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDC 378 (408)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~ 378 (408)
.+.++.|+.++.++++.+|..|+.+|..+.. ..+++.|..++.+.
T Consensus 137 -------------------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~ 181 (201)
T 3ltj_A 137 -------------------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETG 181 (201)
T ss_dssp -------------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC
T ss_pred -------------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC
Confidence 3578999999999999999999999999943 12577888888765
Q ss_pred CHHHHHHHHHHHHhcc
Q 041050 379 SREDIRSLAHRTLSSS 394 (408)
Q Consensus 379 ~~~~~~~~A~~~L~~~ 394 (408)
+ ..++..|.++|...
T Consensus 182 ~-~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 182 T-GFARKVAVNYLETH 196 (201)
T ss_dssp C-HHHHHHHHHHHHHC
T ss_pred C-HHHHHHHHHHHHHH
Confidence 4 45777777776543
No 43
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.40 E-value=5.4e-11 Score=111.74 Aligned_cols=138 Identities=11% Similarity=0.094 Sum_probs=94.9
Q ss_pred HHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh
Q 041050 135 KLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE 214 (408)
Q Consensus 135 ~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~ 214 (408)
.......++.|+..|.++++.+|..|+++|+++.. .+.++.|+.+|. ++++.+|..|+++|+++... +
T Consensus 18 ~~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~-d~~~~vR~~A~~aL~~l~~~-~ 85 (280)
T 1oyz_A 18 NQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCS-DKNYIRRDIGAFILGQIKIC-K 85 (280)
T ss_dssp HHHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHT-CSSHHHHHHHHHHHHHSCCC-T
T ss_pred HHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHc-CCCHHHHHHHHHHHHHhccc-c
Confidence 34455678888888888888888889888888763 235788888887 46788888888888888754 3
Q ss_pred hhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 041050 215 ANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANF 293 (408)
Q Consensus 215 ~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL 293 (408)
..... .++.|...+.+++++.++..++++|++++ .++... ...++.|..++.++++.++..|+++|+++
T Consensus 86 ~~~~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 86 KCEDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp TTHHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred ccchH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 22111 23334333335677888888888888886 333222 23456677777777888888888887776
Q ss_pred h
Q 041050 294 A 294 (408)
Q Consensus 294 ~ 294 (408)
.
T Consensus 156 ~ 156 (280)
T 1oyz_A 156 N 156 (280)
T ss_dssp -
T ss_pred C
Confidence 5
No 44
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.30 E-value=2.4e-11 Score=129.04 Aligned_cols=198 Identities=13% Similarity=0.083 Sum_probs=157.0
Q ss_pred HHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHH-HcCCCCHHHHHHHHHHHHHhccC-Ch
Q 041050 137 FEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLML-LRSFEDETIRRVAAGAIANLAMN-AE 214 (408)
Q Consensus 137 ~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~l-L~~~~~~~v~~~A~~aL~nLa~~-~~ 214 (408)
.....+.++++.|+|++++.|..|+++|.||+.++..+..+...|++.+++.- |. +++.+||..|+++|.||+.+ .+
T Consensus 31 ~~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~-D~~~~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 31 LREDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLT-DNNIDSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp HHHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTT-CSCHHHHHHHHHHHHHHHHHSCH
T ss_pred cchhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCc
Confidence 34445777888899999999999999999999999999999999999887664 55 57899999999999999975 37
Q ss_pred hhHHHHHhcCcHHHHHHHhhcC-------------CC-------HHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHH
Q 041050 215 ANQELIMAQGGISLLSTTAADA-------------ED-------PQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLG 273 (408)
Q Consensus 215 ~~~~~i~~~g~i~~Lv~lL~~~-------------~~-------~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~ 273 (408)
+.+..++..|++++|..++... .. .++...++.+|++|| ++++....+...++++.|+.
T Consensus 110 d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~ 189 (684)
T 4gmo_A 110 DFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLF 189 (684)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHH
Confidence 8889999999999999887421 01 234557889999999 77788888888999999999
Q ss_pred hhcC---CCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHH---HHHHhccCCCHHHHHHHHH
Q 041050 274 MVRC---GHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALP---WIVQNANNEAAPIRRHIEL 347 (408)
Q Consensus 274 lL~~---~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~---~Lv~lL~~~~~~v~~~a~~ 347 (408)
.|.+ ...+++..|+.+|.+|+. .+++....+.+.|... .+..+.+ .+...+..+++
T Consensus 190 ~L~~~~~~~~~v~~~a~~~L~~ls~-----------------dn~~~~~~i~~~~~~~~~~~ll~~~~-~~~~~~~la~g 251 (684)
T 4gmo_A 190 RLISADIAPQDIYEEAISCLTTLSE-----------------DNLKVGQAITDDQETHVYDVLLKLAT-GTDPRAVMACG 251 (684)
T ss_dssp HHHHHCCSCHHHHHHHHHHHHHHHT-----------------TCHHHHHHHHTCCSSCHHHHHHHHHH-SSCTTHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHhc-----------------cCHHHHHHHHhcchHHHHHHHHHHhc-CCcHHHHHHHH
Confidence 8832 246799999999999997 7777777788776543 3333333 34445778889
Q ss_pred HHHHHc
Q 041050 348 ALCHLA 353 (408)
Q Consensus 348 aL~~La 353 (408)
+|.|+.
T Consensus 252 iL~Ni~ 257 (684)
T 4gmo_A 252 VLHNVF 257 (684)
T ss_dssp HHHHHH
T ss_pred HHHhHh
Confidence 998874
No 45
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.25 E-value=2.1e-10 Score=107.70 Aligned_cols=166 Identities=12% Similarity=0.047 Sum_probs=116.5
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050 141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
.++.|+.++.++++.+|..|+++|+.+...+..... .++.|...+..++++.++..|+++|+++....+....
T Consensus 55 ~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-- 127 (280)
T 1oyz_A 55 AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-- 127 (280)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH--
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH--
Confidence 578889999999999999999999988753322111 2333433222356888999999999998743232222
Q ss_pred HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhh
Q 041050 221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA 300 (408)
Q Consensus 221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~ 300 (408)
..++.|+.++ .++++.++..++.+|+++.. .+.++.|+.++.++++.++..|+++|..+..
T Consensus 128 ---~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 188 (280)
T 1oyz_A 128 ---KIVEQSQITA-FDKSTNVRRATAFAISVIND----------KATIPLLINLLKDPNGDVRNWAAFAININKY----- 188 (280)
T ss_dssp ---HHHHHHHHHT-TCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC-----
T ss_pred ---HHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcc-----
Confidence 2467788887 56788999999999987753 2478888999988999999999999988852
Q ss_pred hhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHc
Q 041050 301 ATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLA 353 (408)
Q Consensus 301 ~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La 353 (408)
.+ ..+++.|+.++.++++.+|..|+++|+++.
T Consensus 189 ------------~~---------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 189 ------------DN---------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp ------------CC---------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred ------------Cc---------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 11 134566666776667777777777777665
No 46
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.23 E-value=2.4e-10 Score=102.60 Aligned_cols=157 Identities=17% Similarity=0.147 Sum_probs=131.6
Q ss_pred cCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH
Q 041050 140 VGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL 219 (408)
Q Consensus 140 ~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 219 (408)
.+++.|+.++.++++.+|..|+++|+.+.. .++++.|+.+|. ++++.++..|+++|+.+...
T Consensus 50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~-~~~~~vr~~a~~aL~~~~~~------- 111 (211)
T 3ltm_A 50 RAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERAVEPLIKALK-DEDGWVRQSAAVALGQIGDE------- 111 (211)
T ss_dssp GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCCG-------
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCcH-------
Confidence 568999999999999999999999999764 357899999998 47899999999999998653
Q ss_pred HHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchh
Q 041050 220 IMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESR 299 (408)
Q Consensus 220 i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~ 299 (408)
+.++.|+.++ .++++.++..++.+|+++.. ...++.|..++.++++.++..|+.+|..+..
T Consensus 112 ----~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 172 (211)
T 3ltm_A 112 ----RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---- 172 (211)
T ss_dssp ----GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----
T ss_pred ----HHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----
Confidence 4788999988 67889999999999999853 3578889999999999999999999999852
Q ss_pred hhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCch
Q 041050 300 AATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEV 357 (408)
Q Consensus 300 ~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~ 357 (408)
..+++.|..++.++++.+|..|..+|.++.....
T Consensus 173 ------------------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 173 ------------------------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp ------------------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred ------------------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 2467889999999999999999999999987643
No 47
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.20 E-value=4.7e-10 Score=99.92 Aligned_cols=154 Identities=18% Similarity=0.153 Sum_probs=132.0
Q ss_pred cCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH
Q 041050 140 VGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL 219 (408)
Q Consensus 140 ~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 219 (408)
..++.|+.+|.++++.+|..|+++|+.+.. ..+++.|+.+|. ++++.+|..|+++|+++...
T Consensus 45 ~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~------- 106 (201)
T 3ltj_A 45 RAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERAVEPLIKALK-DEDGWVRQSAAVALGQIGDE------- 106 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCCG-------
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCcH-------
Confidence 468999999999999999999999998754 347899999998 47899999999999998653
Q ss_pred HHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchh
Q 041050 220 IMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESR 299 (408)
Q Consensus 220 i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~ 299 (408)
..++.|+.++ .++++.++..++++|+++.. ...++.|..++.++++.++..|+++|..+..
T Consensus 107 ----~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---- 167 (201)
T 3ltj_A 107 ----RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---- 167 (201)
T ss_dssp ----GGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----
T ss_pred ----HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----
Confidence 3788899988 67889999999999999853 3578889999999999999999999999852
Q ss_pred hhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050 300 AATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ 354 (408)
Q Consensus 300 ~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~ 354 (408)
..+++.|..++.++++.+|..|..+|..+..
T Consensus 168 ------------------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 168 ------------------------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp ------------------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred ------------------------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 2367888999998999999999999988753
No 48
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.08 E-value=3.5e-10 Score=120.04 Aligned_cols=169 Identities=14% Similarity=0.120 Sum_probs=135.0
Q ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCchh
Q 041050 181 GGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC--GNDKL 258 (408)
Q Consensus 181 g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~--~~~~~ 258 (408)
..+.++++.|.+ .++..|..|+++|+||+.+ +..+..+...|++..++.-+..+++++|+..|+++|.||| ..++.
T Consensus 34 ~~i~Pll~~L~S-~~~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 34 DKILPVLKDLKS-PDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HTTHHHHHHHSS-SCCSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhHHHHHHHcCC-CCHHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 356778888985 6788999999999999998 9999999999999887664336788999999999999999 56788
Q ss_pred HHHHHhcccHHHHHHhhcCCC---------------------HHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhh
Q 041050 259 QMKLRSEGGIRALLGMVRCGH---------------------PDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSG 317 (408)
Q Consensus 259 ~~~i~~~g~l~~L~~lL~~~~---------------------~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~ 317 (408)
+..+.+.|++++|..+++... .++..+++.+|.+|+. ++.+.
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e-----------------~s~~~ 174 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLAL-----------------ARDEI 174 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHH-----------------HCHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHh-----------------CCHHH
Confidence 899999999999998875311 1234456778888875 66777
Q ss_pred HHHHHhcCcHHHHHHhccC---CCHHHHHHHHHHHHHHccCchh-HHHHHhCCcH
Q 041050 318 RSLLIEDGALPWIVQNANN---EAAPIRRHIELALCHLAQHEVN-AREMISGGAL 368 (408)
Q Consensus 318 ~~~i~~~g~l~~Lv~lL~~---~~~~v~~~a~~aL~~La~~~~~-~~~l~~~g~i 368 (408)
...+...+.++.|+..+.+ ...+++..|+.+|.+++.+... ...+.+.|..
T Consensus 175 ~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~ 229 (684)
T 4gmo_A 175 HEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQET 229 (684)
T ss_dssp HHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSS
T ss_pred HHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchH
Confidence 7778888999999998743 2578999999999999998544 4555565543
No 49
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.81 E-value=6.8e-08 Score=104.66 Aligned_cols=228 Identities=15% Similarity=0.096 Sum_probs=153.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhH-HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQ-EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
+|.++++++++++.+|..|+++|.++....... ...+ ...++.|+.++. ++++.+|..|+++|.+++...+..-...
T Consensus 176 l~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~-~~~l~~l~~~~~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~ 253 (852)
T 4fdd_A 176 IPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI-DSFIENLFALAG-DEEPEVRKNVCRALVMLLEVRMDRLLPH 253 (852)
T ss_dssp HHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH-HHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHHHCHHHHGGG
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 567778888999999999999999877532211 1111 134788888887 4789999999999999988644432222
Q ss_pred HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHh--cccHHHHHHhhc-----------C----------
Q 041050 221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRS--EGGIRALLGMVR-----------C---------- 277 (408)
Q Consensus 221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~--~g~l~~L~~lL~-----------~---------- 277 (408)
+. +.++.++..+ .+.++.++..++.++.+++..+..+..+.. ...++.++..+. .
T Consensus 254 l~-~l~~~l~~~~-~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~ 331 (852)
T 4fdd_A 254 MH-NIVEYMLQRT-QDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDT 331 (852)
T ss_dssp HH-HHHHHHHHHH-TCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----------
T ss_pred HH-HHHHHHHHHc-cCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccc
Confidence 22 3566777776 567889999999999999966544443311 134566666552 2
Q ss_pred -CCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc
Q 041050 278 -GHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE 356 (408)
Q Consensus 278 -~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 356 (408)
.+..+++.++.+|..|+... | +. +.. .+++.+.+++.+.++.+|..|+++|++++.+.
T Consensus 332 ~~~~~vr~~a~~~L~~la~~~---------------~-~~----~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~ 390 (852)
T 4fdd_A 332 ISDWNLRKCSAAALDVLANVY---------------R-DE----LLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGC 390 (852)
T ss_dssp -CCCCHHHHHHHHHHHHHHHH---------------G-GG----GHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTT
T ss_pred cccchHHHHHHHHHHHHHHhc---------------c-HH----HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 12246788888888887510 1 11 111 46788888888899999999999999999875
Q ss_pred hhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhccH
Q 041050 357 VNAREMISGGALWELVRISRDCSREDIRSLAHRTLSSSL 395 (408)
Q Consensus 357 ~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~ 395 (408)
.....-.-.+.++.|+.++.+. ...++..|.+++....
T Consensus 391 ~~~~~~~l~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~ 428 (852)
T 4fdd_A 391 MQGMIPYLPELIPHLIQCLSDK-KALVRSITCWTLSRYA 428 (852)
T ss_dssp HHHHGGGHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTH
T ss_pred hHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHH
Confidence 4321112345678888888754 4567777776665433
No 50
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.77 E-value=5.1e-08 Score=101.60 Aligned_cols=214 Identities=13% Similarity=0.111 Sum_probs=151.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM 221 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~ 221 (408)
+..+.+-|.++++.+|..|+.+|+++.. ++....+ ++.+..++. +.++.||+.|+.+++++...+++.. .
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~~~~~l-----~~~l~~~L~-d~~~~VRk~A~~al~~i~~~~p~~~---~ 157 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCIRV-DKITEYL-----CEPLRKCLK-DEDPYVRKTAAVCVAKLHDINAQMV---E 157 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTCCS-GGGHHHH-----HHHHHHHSS-CSCHHHHHHHHHHHHHHHHSSCCCH---H
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCh-HHHHHHH-----HHHHHHHcC-CCChHHHHHHHHHHHHHHhhChhhc---c
Confidence 5666677889999999999999999863 3333333 577888888 5799999999999999988645432 2
Q ss_pred hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-chhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhh
Q 041050 222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLCGN-DKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA 300 (408)
Q Consensus 222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~-~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~ 300 (408)
+.+.++.|..+| .++++.++..|+++|..++.+ +.....-...+.+..|+..+...++..+....++++.++.
T Consensus 158 ~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~----- 231 (591)
T 2vgl_B 158 DQGFLDSLRDLI-ADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNP----- 231 (591)
T ss_dssp HHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCC-----
T ss_pred cccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCC-----
Confidence 345678899998 578999999999999999943 3221000112345567777777889888888888888874
Q ss_pred hhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc----CchhHHHHHhCCcHHHHHHHHh
Q 041050 301 ATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ----HEVNAREMISGGALWELVRISR 376 (408)
Q Consensus 301 ~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~----~~~~~~~l~~~g~i~~L~~ll~ 376 (408)
.++... ..+++.+..++++.++.|+.+|++++.++.. +++....+. ..+.+.|+.++.
T Consensus 232 ------------~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~ 293 (591)
T 2vgl_B 232 ------------KDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS 293 (591)
T ss_dssp ------------CSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT
T ss_pred ------------CChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc
Confidence 222211 2467788889999999999999999999974 233333332 334567776654
Q ss_pred cCCHHHHHHHHHHHH
Q 041050 377 DCSREDIRSLAHRTL 391 (408)
Q Consensus 377 ~~~~~~~~~~A~~~L 391 (408)
++.+++-.|.+.+
T Consensus 294 --~d~~vr~~aL~~l 306 (591)
T 2vgl_B 294 --GEPEVQYVALRNI 306 (591)
T ss_dssp --SCHHHHHHHHHHH
T ss_pred --CCccHHHHHHHHH
Confidence 3445666666443
No 51
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.77 E-value=3.3e-07 Score=95.46 Aligned_cols=227 Identities=14% Similarity=0.088 Sum_probs=144.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh----
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN---- 216 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~---- 216 (408)
++.+..++.++++.+|..|+.++.++.. +++.. .+.+.++.|..+|. ++++.++..|+++|..++.+++..
T Consensus 123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~~~~~~~ 198 (591)
T 2vgl_B 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIA-DSNPMVVANAVAALSEISESHPNSNLLD 198 (591)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCCSCCSCC
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCCCccchh
Confidence 5678899999999999999999999976 45432 22456899999998 578999999999999999874422
Q ss_pred -----HHHHHh----------------------------cCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC----CchhH
Q 041050 217 -----QELIMA----------------------------QGGISLLSTTAADAEDPQTLRMVAGAIANLCG----NDKLQ 259 (408)
Q Consensus 217 -----~~~i~~----------------------------~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~----~~~~~ 259 (408)
-..++. ...++.+..++ .+.++.|+..|++++.++.. +++..
T Consensus 199 l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l-~~~~~~V~~ea~~~i~~l~~~~~~~~~~~ 277 (591)
T 2vgl_B 199 LNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRL-SHANSAVVLSAVKVLMKFLELLPKDSDYY 277 (591)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCS-CSSTTHHHHHHHHHHHHSCCSCCBTTBSH
T ss_pred ccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHhhccCCCHHHH
Confidence 112221 01223333344 45677899999999999872 33433
Q ss_pred HHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhh-hhhccCChhhHHHHH-------hc----CcH
Q 041050 260 MKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFI-RCTATGVKSGRSLLI-------ED----GAL 327 (408)
Q Consensus 260 ~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~-i~~~~~~~~~~~~i~-------~~----g~l 327 (408)
..+. .+..+.|+.++. +++.++..|+.+|..+....++........ .|..-.+...+..-. +. .++
T Consensus 278 ~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv 355 (591)
T 2vgl_B 278 NMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVL 355 (591)
T ss_dssp HHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHH
T ss_pred HHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHH
Confidence 3333 345667776654 889999999999999985322221110000 111111111111111 11 256
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCC
Q 041050 328 PWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCS 379 (408)
Q Consensus 328 ~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~ 379 (408)
+.|..++.+.+.+++..++++|+.++..-... ....++.|+.++....
T Consensus 356 ~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~----~~~~v~~Ll~ll~~~~ 403 (591)
T 2vgl_B 356 AELKEYATEVDVDFVRKAVRAIGRCAIKVEQS----AERCVSTLLDLIQTKV 403 (591)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH----HHHHHHHHHHHHcccc
Confidence 67778888889999999999999999863211 1123556666665443
No 52
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.74 E-value=9.5e-08 Score=103.51 Aligned_cols=220 Identities=11% Similarity=0.017 Sum_probs=144.8
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH-
Q 041050 141 GLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE- 218 (408)
Q Consensus 141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~- 218 (408)
.++.++.++.++++++|..|+++|.+++. .+..-...++ +.++.++.++. +.++.++..|+.++.+++.. +..+.
T Consensus 216 ~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~-~~~~~vr~~a~e~l~~l~~~-~~~~~~ 292 (852)
T 4fdd_A 216 FIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQ-DQDENVALEACEFWLTLAEQ-PICKDV 292 (852)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHT-CSSHHHHHHHHHHHHHHTTS-TTHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHcc-CCcHHHHHHHHHHHHHHhcc-hhHHHH
Confidence 46777788889999999999999999987 4332111122 24677777777 46788999999888888753 11111
Q ss_pred ------HHH---------------------------------------------------hcC----cHHHHHHHhhcCC
Q 041050 219 ------LIM---------------------------------------------------AQG----GISLLSTTAADAE 237 (408)
Q Consensus 219 ------~i~---------------------------------------------------~~g----~i~~Lv~lL~~~~ 237 (408)
.++ ... .++.+..++ .++
T Consensus 293 ~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l-~~~ 371 (852)
T 4fdd_A 293 LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELL-FHH 371 (852)
T ss_dssp HTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH-TCS
T ss_pred HHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-cCC
Confidence 000 001 123333444 456
Q ss_pred CHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhh
Q 041050 238 DPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSG 317 (408)
Q Consensus 238 ~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~ 317 (408)
++.++..+++++++++........-.-.+.++.++..+.++++.|+..|++++.+++..-... ....
T Consensus 372 ~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~------------~~~~- 438 (852)
T 4fdd_A 372 EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ------------PPDT- 438 (852)
T ss_dssp SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS------------CTTT-
T ss_pred CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccc------------hHHH-
Confidence 788999999999999843321111112457888999999999999999999999998510000 0000
Q ss_pred HHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchh-HHHHHhCCcHHHHHHHHhcCCHHH
Q 041050 318 RSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVN-AREMISGGALWELVRISRDCSRED 382 (408)
Q Consensus 318 ~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~-~~~l~~~g~i~~L~~ll~~~~~~~ 382 (408)
.-.++++.|+..+.+.++.++..|+++|.+++..... .... -.+.++.|..++...+.+.
T Consensus 439 ----~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~-l~~ll~~L~~~l~~~~~~~ 499 (852)
T 4fdd_A 439 ----YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY-LAYILDTLVFAFSKYQHKN 499 (852)
T ss_dssp ----THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGG-HHHHHHHHHHHHHHCCHHH
T ss_pred ----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhH-HHHHHHHHHHHHHHhChHH
Confidence 1125788899999888999999999999999865221 1111 2456777777777665554
No 53
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.61 E-value=3e-06 Score=86.90 Aligned_cols=206 Identities=14% Similarity=0.066 Sum_probs=139.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM 221 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~ 221 (408)
+|.+..+..+++..+|..|+.+++.++..-.. .. ....+|.+..++. ++++.+|..|+.+|..++...+. ...
T Consensus 128 ~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~--~~-~~~l~~~l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~---~~~ 200 (588)
T 1b3u_A 128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS--AV-KAELRQYFRNLCS-DDTPMVRRAAASKLGEFAKVLEL---DNV 200 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH--HH-HHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHHHTSCH---HHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH--HH-HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHhcH---HhH
Confidence 44444566677888888888888888762211 11 1224677777777 57899999999999999876221 122
Q ss_pred hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhh
Q 041050 222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLCG-NDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA 300 (408)
Q Consensus 222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~-~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~ 300 (408)
....+|.+..++ .++++.++..++.+|..++. .+. .......++.+..++.++++.++..++.++..++..
T Consensus 201 ~~~l~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~---- 272 (588)
T 1b3u_A 201 KSEIIPMFSNLA-SDEQDSVRLLAVEACVNIAQLLPQ---EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKA---- 272 (588)
T ss_dssp HHTHHHHHHHHH-TCSCHHHHTTHHHHHHHHHHHSCH---HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHH----
T ss_pred HHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH----
Confidence 345677788877 56778999999999999872 221 112235677788888888899999999999998740
Q ss_pred hhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc--hhHHHHHhCCcHHHHHHHHhcC
Q 041050 301 ATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE--VNAREMISGGALWELVRISRDC 378 (408)
Q Consensus 301 ~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~--~~~~~l~~~g~i~~L~~ll~~~ 378 (408)
.+.+ .....+++.++.+++++++.+|..|+.++..++..- .......-...++.+..++.+.
T Consensus 273 -----------~~~~-----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~ 336 (588)
T 1b3u_A 273 -----------VGPE-----ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA 336 (588)
T ss_dssp -----------HCHH-----HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS
T ss_pred -----------hCcc-----cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCC
Confidence 0111 123457899999999999999999999999988752 2111111223455555555543
No 54
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.58 E-value=1.3e-06 Score=89.57 Aligned_cols=220 Identities=14% Similarity=0.059 Sum_probs=142.0
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050 141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
.+|.++.+++++++++|..++.+|..+...-.. .. .....+|.|..++. +.+..+|..++.+|..++.. -.. .+
T Consensus 364 l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-~~-~~~~~lp~l~~~~~-d~~~~vr~~~~~~l~~l~~~-~~~--~~ 437 (588)
T 1b3u_A 364 LLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-RQ-LSQSLLPAIVELAE-DAKWRVRLAIIEYMPLLAGQ-LGV--EF 437 (588)
T ss_dssp THHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-HH-HHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHH-HCG--GG
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH-HH-HHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHH-cCH--HH
Confidence 456666777777788888888777776541100 01 11234677777776 46777888888888877642 100 01
Q ss_pred HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhh
Q 041050 221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA 300 (408)
Q Consensus 221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~ 300 (408)
+....+|.++..+ .++++.++..++.++..++..-... ..-...++.|..++.+++..++..+++++..++..
T Consensus 438 ~~~~l~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~---- 510 (588)
T 1b3u_A 438 FDEKLNSLCMAWL-VDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV---- 510 (588)
T ss_dssp CCHHHHHHHHHGG-GCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh----
Confidence 1112356677776 5567788888888888887221111 11235677777777788888888888888888740
Q ss_pred hhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCH
Q 041050 301 ATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSR 380 (408)
Q Consensus 301 ~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~ 380 (408)
-.. ...-..++|.|...+.++++++|..++++++.++..-.. .......++.|..++. ..+
T Consensus 511 ---------------~~~-~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~~~p~l~~l~~-d~d 571 (588)
T 1b3u_A 511 ---------------CGQ-DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN--STLQSEVKPILEKLTQ-DQD 571 (588)
T ss_dssp ---------------HHH-HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH--HHHHHHHHHHHHHHTT-CSS
T ss_pred ---------------cCH-HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch--hhhHHHHHHHHHHHcC-CCc
Confidence 001 112346889999999999999999999999999875221 1223345667777655 445
Q ss_pred HHHHHHHHHHHh
Q 041050 381 EDIRSLAHRTLS 392 (408)
Q Consensus 381 ~~~~~~A~~~L~ 392 (408)
.+++..|.+++.
T Consensus 572 ~~vr~~a~~al~ 583 (588)
T 1b3u_A 572 VDVKYFAQEALT 583 (588)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 577777776664
No 55
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.51 E-value=3.5e-05 Score=66.81 Aligned_cols=187 Identities=20% Similarity=0.222 Sum_probs=143.0
Q ss_pred hcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhH
Q 041050 139 QVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQ 217 (408)
Q Consensus 139 ~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~ 217 (408)
...+..++.+|..+-=.++.+|..++.+++. .++..+.+ +.+|+.+++.++..+.....+.+++.++...|+..
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence 3457888999988888999999999999998 67776554 56788888777777776777889999988767665
Q ss_pred HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 041050 218 ELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKC 296 (408)
Q Consensus 218 ~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~ 296 (408)
..+ +|.|..-. .-.+|.++.....+|..++ .||..-..+. .-+..|+.++|..=+-.|...+..+..
T Consensus 106 ~~v-----Vp~lfany-rigd~kikIn~~yaLeeIaranP~l~~~v~-----rdi~smltskd~~Dkl~aLnFi~alGe- 173 (253)
T 2db0_A 106 KSM-----IPVLFANY-RIGDEKTKINVSYALEEIAKANPMLMASIV-----RDFMSMLSSKNREDKLTALNFIEAMGE- 173 (253)
T ss_dssp HHH-----HHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCHHHHHHHH-----HHHHHHTSCSSHHHHHHHHHHHHTCCT-
T ss_pred Hhh-----HHHHHHHH-hcCCccceecHHHHHHHHHHhChHHHHHHH-----HHHHHHhcCCChHHHHHHHHHHHHHhc-
Confidence 544 67776665 4569999999999999998 7887755554 348889988886555556666666654
Q ss_pred chhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHH
Q 041050 297 ESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMI 363 (408)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~ 363 (408)
.+..+ -.-.+|.|..+|...+.-||..|+.+|.+++.-.+..+.++
T Consensus 174 ----------------n~~~y-----v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii 219 (253)
T 2db0_A 174 ----------------NSFKY-----VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV 219 (253)
T ss_dssp ----------------TTHHH-----HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred ----------------cCccc-----cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH
Confidence 12221 12478999999999999999999999999999866555543
No 56
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.51 E-value=1.2e-06 Score=87.07 Aligned_cols=228 Identities=14% Similarity=0.092 Sum_probs=148.0
Q ss_pred CHHHHHHhhcCC--CHHHHHHHHHHHHHHcCC-chhH-HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh
Q 041050 141 GLHKILSLLESE--DANVRIHAVKVVANLAAE-EANQ-EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN 216 (408)
Q Consensus 141 ~v~~Ll~lL~s~--~~~v~~~A~~aL~nLa~~-~~~~-~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~ 216 (408)
.++.++..+.++ +..+|..|++++.++... ..+- ......-.++.+...+. +.++.++..++.+|..++...+..
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~ 251 (462)
T 1ibr_B 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ-CPDTRVRVAALQNLVKIMSLYYQY 251 (462)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888876 799999999999987642 2111 01111112555556665 468899999999999998653322
Q ss_pred HHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHH------------------HHHh---cccHHHHHHhh
Q 041050 217 QELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQM------------------KLRS---EGGIRALLGMV 275 (408)
Q Consensus 217 ~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~------------------~i~~---~g~l~~L~~lL 275 (408)
-...+..+.++.++..+ ...++.++..++.++.+++....... .+.+ ...++.++..+
T Consensus 252 ~~~~~~~~l~~~~~~~~-~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l 330 (462)
T 1ibr_B 252 METYMGPALFAITIEAM-KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (462)
T ss_dssp CTTTTTTTHHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHH
Confidence 11112214566666666 56788999999999999884321100 0111 23456666666
Q ss_pred cC-------CCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHH
Q 041050 276 RC-------GHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELA 348 (408)
Q Consensus 276 ~~-------~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~a 348 (408)
.. ++..++..|+.+|..++.. .| + .+. ..+++.+...+.+.++.+|..|+.+
T Consensus 331 ~~~d~d~~~~~~~~r~~a~~~L~~l~~~---------------~~--~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~ 389 (462)
T 1ibr_B 331 TKQDENDDDDDWNPCKAAGVCLMLLATC---------------CE--D---DIV-PHVLPFIKEHIKNPDWRYRDAAVMA 389 (462)
T ss_dssp TCCCSSCCTTCCSHHHHHHHHHHHHHHH---------------TT--T---THH-HHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HhcccccccccchHHHHHHHHHHHHHHh---------------cc--H---HHH-HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 42 2356888899999998851 11 1 112 2467788888899999999999999
Q ss_pred HHHHccCch-h-HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041050 349 LCHLAQHEV-N-AREMISGGALWELVRISRDCSREDIRSLAHRTLSS 393 (408)
Q Consensus 349 L~~La~~~~-~-~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 393 (408)
++.++.+.. . .... -..+++.|+..+.++. ..+|..|.++|..
T Consensus 390 l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~-~~Vr~~a~~~l~~ 434 (462)
T 1ibr_B 390 FGCILEGPEPSQLKPL-VIQAMPTLIELMKDPS-VVVRDTAAWTVGR 434 (462)
T ss_dssp HHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSC-HHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence 999998632 1 1111 2568899999998655 5677777766644
No 57
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.49 E-value=1.3e-08 Score=84.51 Aligned_cols=120 Identities=18% Similarity=0.136 Sum_probs=91.1
Q ss_pred hCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhH
Q 041050 180 AGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQ 259 (408)
Q Consensus 180 ~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~ 259 (408)
...++.|+.+|.+ +++.+|..|+++|+++... .++.|+.+| .++++.++..++++|+++..
T Consensus 11 ~~~~~~l~~~L~~-~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L-~d~~~~vR~~A~~aL~~~~~----- 71 (131)
T 1te4_A 11 SSGLVPRGSHMAD-ENKWVRRDVSTALSRMGDE------------AFEPLLESL-SNEDWRIRGAAAWIIGNFQD----- 71 (131)
T ss_dssp ----------CCS-SCCCSSSSCCSSTTSCSST------------THHHHHHGG-GCSCHHHHHHHHHHHGGGCS-----
T ss_pred cccHHHHHHHhcC-CCHHHHHHHHHHHHHhCch------------HHHHHHHHH-cCCCHHHHHHHHHHHHhcCC-----
Confidence 4467888999984 6778999898888876533 368899998 46889999999999998863
Q ss_pred HHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCH
Q 041050 260 MKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAA 339 (408)
Q Consensus 260 ~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~ 339 (408)
...++.|..++.++++.|+..|+++|.++.. ..+++.|+.+++++++
T Consensus 72 -----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------------------------~~a~~~L~~~l~d~~~ 118 (131)
T 1te4_A 72 -----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------------------------ERVRAAMEKLAETGTG 118 (131)
T ss_dssp -----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------------------------HHHHHHHHHHTTSCCT
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------------------------HHHHHHHHHHHhCCCH
Confidence 2357889999999999999999999999852 2368899999998899
Q ss_pred HHHHHHHHHHHH
Q 041050 340 PIRRHIELALCH 351 (408)
Q Consensus 340 ~v~~~a~~aL~~ 351 (408)
.+|..|+.+|..
T Consensus 119 ~vr~~A~~aL~~ 130 (131)
T 1te4_A 119 FARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 58
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.49 E-value=5.1e-06 Score=86.92 Aligned_cols=219 Identities=14% Similarity=0.052 Sum_probs=131.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
++.+..+|++.++.+|..|+.++.++.. .++... +.++.+..+|. +.++.++..|+++|..++..+++....+
T Consensus 144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~-D~d~~V~~~Al~~L~~i~~~~~~~~~~~ 217 (618)
T 1w63_A 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLN-EKNHGVLHTSVVLLTEMCERSPDMLAHF 217 (618)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTT-CCCHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhC-CCCHhHHHHHHHHHHHHHHhChHHHHHH
Confidence 6777788999999999999999999987 554332 45777888887 5789999999999999998744432233
Q ss_pred HhcCcHHHHHHHhhc--------------CCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhc------CCC
Q 041050 221 MAQGGISLLSTTAAD--------------AEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVR------CGH 279 (408)
Q Consensus 221 ~~~g~i~~Lv~lL~~--------------~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~------~~~ 279 (408)
. ..+|.++.+|.+ ..+|-.+..++.++..++ .++..... ..+.|..++. +.+
T Consensus 218 ~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~-----~~~~L~~l~~~~~~~~~~~ 290 (618)
T 1w63_A 218 R--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEA-----MNDILAQVATNTETSKNVG 290 (618)
T ss_dssp H--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHT-----THHHHHHHHHTSCCSSTHH
T ss_pred H--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHHHhccccccchH
Confidence 2 467878777643 347788888888888888 44332221 2222333321 122
Q ss_pred HHHHHHHHHHHHHhhccchhhhhHHHhhhhhccC--ChhhHHHHHh-------------cCcHHHHHHhccCCCHHHHHH
Q 041050 280 PDVLSQVARGIANFAKCESRAATQVRFIRCTATG--VKSGRSLLIE-------------DGALPWIVQNANNEAAPIRRH 344 (408)
Q Consensus 280 ~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~--~~~~~~~i~~-------------~g~l~~Lv~lL~~~~~~v~~~ 344 (408)
..+...|++++..+.. .+......+..++.|.. +++.+..... ....+.+..++.+++..+|..
T Consensus 291 ~aV~~ea~~~i~~l~~-~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~ 369 (618)
T 1w63_A 291 NAILYETVLTIMDIKS-ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRR 369 (618)
T ss_dssp HHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHH
Confidence 3455555555555431 11111111122222211 1111111110 124456777778788888888
Q ss_pred HHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCH
Q 041050 345 IELALCHLAQHEVNAREMISGGALWELVRISRDCSR 380 (408)
Q Consensus 345 a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~ 380 (408)
|..+|..++...+- ..+ +..|...+.+.+.
T Consensus 370 alelL~~l~~~~nv-~~i-----v~eL~~~l~~~d~ 399 (618)
T 1w63_A 370 AMELSFALVNGNNI-RGM-----MKELLYFLDSCEP 399 (618)
T ss_dssp HHHHHHHHCCSSST-HHH-----HHHHHHHHHHCCH
T ss_pred HHHHHHHHcccccH-HHH-----HHHHHHHHHhCCH
Confidence 88888888876432 222 3566666665443
No 59
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.46 E-value=1.7e-08 Score=83.86 Aligned_cols=120 Identities=19% Similarity=0.141 Sum_probs=90.5
Q ss_pred hcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH
Q 041050 139 QVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE 218 (408)
Q Consensus 139 ~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~ 218 (408)
...++.++.+|+++++.+|..|+++|+++.. ..++.|+.+|. ++++.+|..|+++|+++...
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~-d~~~~vR~~A~~aL~~~~~~------ 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLS-NEDWRIRGAAAWIIGNFQDE------ 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGG-CSCHHHHHHHHHHHGGGCSH------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHc-CCCHHHHHHHHHHHHhcCCH------
Confidence 3457888899999999999999999887643 13788999998 57899999999999988642
Q ss_pred HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 041050 219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIAN 292 (408)
Q Consensus 219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~n 292 (408)
..++.|+.++ +++++.++..++++|.++.. ..+++.|..+++++++.++..|+++|..
T Consensus 73 -----~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 -----RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -----HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -----HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2578888888 45788999999999998852 3467888899988999999999988865
No 60
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.43 E-value=3.1e-06 Score=88.60 Aligned_cols=230 Identities=13% Similarity=0.089 Sum_probs=151.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM 221 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~ 221 (408)
+..+.+-|.++++.+|..|+++|+++.. + .+.+ ..++.+..+|. +.++.+|+.|+.+++++...+|+...
T Consensus 109 in~l~kDL~~~n~~vr~lAL~~L~~i~~-~----~~~~-~l~~~l~~~L~-~~~~~VRk~A~~al~~l~~~~p~~v~--- 178 (618)
T 1w63_A 109 TNCIKNDLNHSTQFVQGLALCTLGCMGS-S----EMCR-DLAGEVEKLLK-TSNSYLRKKAALCAVHVIRKVPELME--- 178 (618)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHHCC-H----HHHH-HHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHHCGGGGG---
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcCC-H----HHHH-HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHChHHHH---
Confidence 5677778889999999999999999985 2 2322 35788899998 47899999999999999876465432
Q ss_pred hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-chhHHHHHhcccHHHHHHhhc---------------CCCHHHHHH
Q 041050 222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLCGN-DKLQMKLRSEGGIRALLGMVR---------------CGHPDVLSQ 285 (408)
Q Consensus 222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~-~~~~~~i~~~g~l~~L~~lL~---------------~~~~~v~~~ 285 (408)
+.++.+..++ .+.++.++..|+.+|..++.. ++....+. ..++.++.+|. ..+|..+..
T Consensus 179 --~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~ 253 (618)
T 1w63_A 179 --MFLPATKNLL-NEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR 253 (618)
T ss_dssp --GGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred --HHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence 4567777787 568899999999999999943 33323332 56777777664 258889888
Q ss_pred HHHHHHHhhccchhhhhH---HHhhhhhcc---CCh------hhHHHHHh--------cCcHHHHHHhccCCCHHHHHHH
Q 041050 286 VARGIANFAKCESRAATQ---VRFIRCTAT---GVK------SGRSLLIE--------DGALPWIVQNANNEAAPIRRHI 345 (408)
Q Consensus 286 a~~aL~nL~~~~~~~~~~---~~~~i~~~~---~~~------~~~~~i~~--------~g~l~~Lv~lL~~~~~~v~~~a 345 (408)
+..+|+.++..+++.... +...++.-. .+. +....+.. ..+++.|..++.+.++++|..|
T Consensus 254 il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~a 333 (618)
T 1w63_A 254 ILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVA 333 (618)
T ss_dssp HHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 999999998644332211 111111100 000 00011111 1356677777777778888888
Q ss_pred HHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 041050 346 ELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHRTL 391 (408)
Q Consensus 346 ~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L 391 (408)
..+|..++...+. ++. .....+...+.+ ++..++..|..+|
T Consensus 334 L~~L~~i~~~~p~---~~~-~~~~~i~~~l~d-~d~~Ir~~alelL 374 (618)
T 1w63_A 334 LTSLLKTVQTDHN---AVQ-RHRSTIVDCLKD-LDVSIKRRAMELS 374 (618)
T ss_dssp HHHHHHHHHHHHH---HHG-GGHHHHHHGGGS-SCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCHH---HHH-HHHHHHHHHccC-CChhHHHHHHHHH
Confidence 8888887764221 222 245566666664 3456777777554
No 61
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.34 E-value=2.8e-06 Score=84.31 Aligned_cols=190 Identities=9% Similarity=0.107 Sum_probs=129.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH-
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL- 219 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~- 219 (408)
++.+...+.++++++|..++++|..++. .+..-...+..+.++.++..+. +.++.++..|+.++.+++.. ......
T Consensus 219 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~a~~~l~~~~~~-~~~~~~~ 296 (462)
T 1ibr_B 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK-SDIDEVALQGIEFWSNVCDE-EMDLAIE 296 (462)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 4555566778899999999999999986 3221111111144677777777 46889999999999988765 311110
Q ss_pred -----------------HHh---cCcHHHHHHHhhcC------CCHHHHHHHHHHHHHHhC-CchhHHHHHhcccHHHHH
Q 041050 220 -----------------IMA---QGGISLLSTTAADA------EDPQTLRMVAGAIANLCG-NDKLQMKLRSEGGIRALL 272 (408)
Q Consensus 220 -----------------i~~---~g~i~~Lv~lL~~~------~~~~v~~~a~~aL~nL~~-~~~~~~~i~~~g~l~~L~ 272 (408)
+++ ...+|.++..+.+. ++..++..++.+|..++. .++ .+. ...++.+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~ 372 (462)
T 1ibr_B 297 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIK 372 (462)
T ss_dssp HCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHH
T ss_pred cccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHH
Confidence 111 22455666666432 234688899999999982 221 122 24567777
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCCh-hhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHH
Q 041050 273 GMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVK-SGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCH 351 (408)
Q Consensus 273 ~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~-~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~ 351 (408)
..+.++++.++..|+.+++.++. |.. +...... ..++|.++..+.++++.+|..|+++|++
T Consensus 373 ~~l~~~~~~~r~aal~~l~~l~~-----------------~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~ 434 (462)
T 1ibr_B 373 EHIKNPDWRYRDAAVMAFGCILE-----------------GPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGR 434 (462)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTSS-----------------SSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHHhc-----------------CCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 88888999999999999999985 221 1100111 4689999999999999999999999999
Q ss_pred HccC
Q 041050 352 LAQH 355 (408)
Q Consensus 352 La~~ 355 (408)
++..
T Consensus 435 ~~~~ 438 (462)
T 1ibr_B 435 ICEL 438 (462)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9975
No 62
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.32 E-value=2.7e-05 Score=77.59 Aligned_cols=208 Identities=11% Similarity=0.104 Sum_probs=140.2
Q ss_pred HHHhhcC-CCHHHHHHHHHHHHHHcCCchhHHHHHHhCC--HHHHHHHHcC----------------CCCHHHHHHHHHH
Q 041050 145 ILSLLES-EDANVRIHAVKVVANLAAEEANQEKIVEAGG--LSSLLMLLRS----------------FEDETIRRVAAGA 205 (408)
Q Consensus 145 Ll~lL~s-~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~--i~~L~~lL~~----------------~~~~~v~~~A~~a 205 (408)
++..|.. ++.+.+..++..|..|...++.|..+.+.++ +|+++.++.. ....+++..++.+
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~ 251 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLL 251 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHH
Confidence 3444444 3566677899999999999999999987655 6777654431 1136778889999
Q ss_pred HHHhccCChhhHHHHHhcCcH--HHHHHHhhcCCCHHHHHHHHHHHHHHhCCc-----hh-HHHHHhcccHHHHHHhhc-
Q 041050 206 IANLAMNAEANQELIMAQGGI--SLLSTTAADAEDPQTLRMVAGAIANLCGND-----KL-QMKLRSEGGIRALLGMVR- 276 (408)
Q Consensus 206 L~nLa~~~~~~~~~i~~~g~i--~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~-----~~-~~~i~~~g~l~~L~~lL~- 276 (408)
+|-|+.+ +...+.+...+.. +.|+.+++.+..+.+.|.++.++.|+.... .. .+.+.-.++++ ++..|.
T Consensus 252 iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~ 329 (480)
T 1ho8_A 252 IWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSE 329 (480)
T ss_dssp HHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHS
T ss_pred HHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhh
Confidence 9999999 8888888877644 577788888888999999999999998432 11 22333344555 555442
Q ss_pred --CCCHHHHHH-------------------------------------------------------HHHHHHHhhccc--
Q 041050 277 --CGHPDVLSQ-------------------------------------------------------VARGIANFAKCE-- 297 (408)
Q Consensus 277 --~~~~~v~~~-------------------------------------------------------a~~aL~nL~~~~-- 297 (408)
-.|+++... ....|..+-...
T Consensus 330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~ 409 (480)
T 1ho8_A 330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR 409 (480)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence 356666542 223333332100
Q ss_pred ------hhhhhHHHhh---hhhcc-CChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050 298 ------SRAATQVRFI---RCTAT-GVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ 354 (408)
Q Consensus 298 ------~~~~~~~~~~---i~~~~-~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~ 354 (408)
++....+.=| |+.|. .+|.++..+.+.|+=..+++++.+++++|+.+|..|+..+..
T Consensus 410 ~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 410 NGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 0111011000 22221 468888888899999999999999999999999999987643
No 63
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.29 E-value=3.9e-06 Score=76.78 Aligned_cols=183 Identities=16% Similarity=0.174 Sum_probs=131.3
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHcCC-chhH-HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC-hhhHHHH
Q 041050 144 KILSLLESEDANVRIHAVKVVANLAAE-EANQ-EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNA-EANQELI 220 (408)
Q Consensus 144 ~Ll~lL~s~~~~v~~~A~~aL~nLa~~-~~~~-~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~~i 220 (408)
.+.+.+.+.+-..|..|+..|..+... +... ..+ ...++.|..++..+.+..++..|+.++..|+..- +.... .
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~ 95 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-Y 95 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-H
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-H
Confidence 467788899999999999999988653 3211 011 1126677778842468999999999999998641 11111 1
Q ss_pred HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhh
Q 041050 221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA 300 (408)
Q Consensus 221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~ 300 (408)
+ ...+|.|+..+ .+..+.++..+..+|.+++.+.... ..++.+...+.++++.++..++..|..+...
T Consensus 96 ~-~~ilp~ll~~l-~d~~~~vr~~a~~aL~~~~~~~~~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~---- 163 (242)
T 2qk2_A 96 A-SACVPSLLEKF-KEKKPNVVTALREAIDAIYASTSLE------AQQESIVESLSNKNPSVKSETALFIARALTR---- 163 (242)
T ss_dssp H-HHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTSCHH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT----
T ss_pred H-HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHH----
Confidence 1 22578888887 5577899999999999998654321 3466688888889999999999999996531
Q ss_pred hhHHHhhhhhccCChh--hHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 301 ATQVRFIRCTATGVKS--GRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 301 ~~~~~~~i~~~~~~~~--~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
..++ ....+ . .++|.|+.++.+.++++|..|..+++.++..
T Consensus 164 ------------~~~~~~~~~~l-~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 164 ------------TQPTALNKKLL-K-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp ------------CCGGGCCHHHH-H-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred ------------cCCCCccHHHH-H-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 1111 11122 2 5889999999999999999999999998864
No 64
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.20 E-value=1.6e-05 Score=85.64 Aligned_cols=223 Identities=10% Similarity=0.061 Sum_probs=145.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh----
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN---- 216 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~---- 216 (408)
++.+...+.+++.++|..++.+|..++. .+..-...+....++.++..+. +.++.++..|+.++.+++.. ...
T Consensus 219 l~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~al~~l~~l~~~-~~~~~~~ 296 (876)
T 1qgr_A 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK-SDIDEVALQGIEFWSNVCDE-EMDLAIE 296 (876)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHH-HHhHhhh
Confidence 5556677778889999999999999886 4433222333345788888776 46789999999999888764 210
Q ss_pred ------------------HHHHHhcCcHHHHHHHhhc------CCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHH
Q 041050 217 ------------------QELIMAQGGISLLSTTAAD------AEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALL 272 (408)
Q Consensus 217 ------------------~~~i~~~g~i~~Lv~lL~~------~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~ 272 (408)
..... ...++.++..+.. +++..++..++.++..++..-. ..+. ...++.+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~-~~~l~~l~ 372 (876)
T 1qgr_A 297 ASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV-PHVLPFIK 372 (876)
T ss_dssp HHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHH
T ss_pred hccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--HhhH-HHHHHHHH
Confidence 00001 2235666677642 2345688888888888872211 1112 24556667
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCCh-hhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHH
Q 041050 273 GMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVK-SGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCH 351 (408)
Q Consensus 273 ~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~-~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~ 351 (408)
..+.++++.++..|++++++++. +.. +...... ..++|.++..+.++++.+|..|+++|.+
T Consensus 373 ~~l~~~~~~~r~~a~~~l~~i~~-----------------~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~ 434 (876)
T 1qgr_A 373 EHIKNPDWRYRDAAVMAFGCILE-----------------GPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGR 434 (876)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTSS-----------------SSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHccCCChHHHHHHHHHHHHHHc-----------------CCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 77788899999999999999985 332 2222222 3488999999999999999999999999
Q ss_pred HccCchhH---HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 041050 352 LAQHEVNA---REMISGGALWELVRISRDCSREDIRSLAHRTL 391 (408)
Q Consensus 352 La~~~~~~---~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L 391 (408)
++...... ... -...++.|...+.+. ..++..|.+++
T Consensus 435 ~~~~~~~~~~~~~~-l~~~l~~l~~~l~~~--~~v~~~a~~al 474 (876)
T 1qgr_A 435 ICELLPEAAINDVY-LAPLLQCLIEGLSAE--PRVASNVCWAF 474 (876)
T ss_dssp HHHHCGGGTSSTTT-HHHHHHHHHHHTTSC--HHHHHHHHHHH
T ss_pred HHHhCchhcccHHH-HHHHHHHHHHHHcCC--HHHHHHHHHHH
Confidence 99752210 000 123566777777653 44455555443
No 65
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.19 E-value=4.6e-05 Score=81.98 Aligned_cols=226 Identities=14% Similarity=0.124 Sum_probs=146.6
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHHHHHHcC-CchhH-HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhH
Q 041050 142 LHKILSLLESE--DANVRIHAVKVVANLAA-EEANQ-EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQ 217 (408)
Q Consensus 142 v~~Ll~lL~s~--~~~v~~~A~~aL~nLa~-~~~~~-~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~ 217 (408)
++.++..+.++ +..+|..|+.++.+++. -+.+- ........++.+...+. +++..++..++.+|..++...+..-
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~ 252 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ-CPDTRVRVAALQNLVKIMSLYYQYM 252 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHSGGGC
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhHHHH
Confidence 45566677765 68999999999999875 22111 11111123566666665 4678999999999999887544433
Q ss_pred HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchh-------------------HHHHH--hcccHHHHHHhhc
Q 041050 218 ELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKL-------------------QMKLR--SEGGIRALLGMVR 276 (408)
Q Consensus 218 ~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~-------------------~~~i~--~~g~l~~L~~lL~ 276 (408)
...+....++.++..+ .+.++.++..++.++.+++..... ...+. -...++.++..+.
T Consensus 253 ~~~~~~~l~~~~~~~~-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 331 (876)
T 1qgr_A 253 ETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 331 (876)
T ss_dssp HHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence 3333445677777776 567889999999999988743210 00000 0234566677664
Q ss_pred -------CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHH
Q 041050 277 -------CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELAL 349 (408)
Q Consensus 277 -------~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL 349 (408)
+++..++..|+.++..++.. ..+ .+.. .+++.+...+.+.++.+|..|++++
T Consensus 332 ~~~~d~~~~~~~~r~~a~~~l~~l~~~-----------------~~~---~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l 390 (876)
T 1qgr_A 332 KQDENDDDDDWNPCKAAGVCLMLLATC-----------------CED---DIVP-HVLPFIKEHIKNPDWRYRDAAVMAF 390 (876)
T ss_dssp CCCSSCCTTCCCHHHHHHHHHHHHHHH-----------------HGG---GGHH-HHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHHHHHH-----------------CcH---hhHH-HHHHHHHHHccCCChHHHHHHHHHH
Confidence 23457888888999998851 111 1122 4677778888888999999999999
Q ss_pred HHHccCch--hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041050 350 CHLAQHEV--NAREMISGGALWELVRISRDCSREDIRSLAHRTLS 392 (408)
Q Consensus 350 ~~La~~~~--~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 392 (408)
+.++.+.. ...... ...++.|+..+.+.. ..++..|.+++.
T Consensus 391 ~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~-~~vr~~a~~~l~ 433 (876)
T 1qgr_A 391 GCILEGPEPSQLKPLV-IQAMPTLIELMKDPS-VVVRDTAAWTVG 433 (876)
T ss_dssp HHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSS-HHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCC-HHHHHHHHHHHH
Confidence 99998743 222222 347888888887544 456666665554
No 66
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.13 E-value=0.00014 Score=78.03 Aligned_cols=223 Identities=9% Similarity=0.093 Sum_probs=142.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC-Cch-hHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh---
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA-EEA-NQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN--- 216 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~-~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~--- 216 (408)
++.+...+.+++..+|..++.+|..++. .+. ....+ ....++.++..+. +.++.++..|+.++..++.. ...
T Consensus 226 l~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~-~~~~~vr~~a~~~l~~l~~~-~~~~~~ 302 (861)
T 2bpt_A 226 MQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMK-SPNDKVASMTVEFWSTICEE-EIDIAY 302 (861)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHH-HHhhhh
Confidence 4455566778899999999999999886 232 22222 2134566666776 46789999999999988775 211
Q ss_pred ---------------HHHHHhcCcHHHHHHHhhcC------CCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh
Q 041050 217 ---------------QELIMAQGGISLLSTTAADA------EDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV 275 (408)
Q Consensus 217 ---------------~~~i~~~g~i~~Lv~lL~~~------~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL 275 (408)
...++ ...+|.++..+... ++..++..+..+|..++..-. ..+. ...++.+...+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~-~~l~~~l~~~l 378 (861)
T 2bpt_A 303 ELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL-EPVLEFVEQNI 378 (861)
T ss_dssp HHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHT
T ss_pred hhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH-HHHHHHHHHHc
Confidence 11111 33567777777532 235788899999999873211 0111 13455666777
Q ss_pred cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCCh-hhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050 276 RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVK-SGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ 354 (408)
Q Consensus 276 ~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~-~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~ 354 (408)
.++++.++..++++++.++. +.. +......+ .+++.|+..+.++++.+|..++++++.++.
T Consensus 379 ~~~~~~~r~~a~~~l~~i~~-----------------~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~ 440 (861)
T 2bpt_A 379 TADNWRNREAAVMAFGSIMD-----------------GPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIAD 440 (861)
T ss_dssp TCSSHHHHHHHHHHHHHTSS-----------------SSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHc-----------------CCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 78889999999999999985 321 22222222 478899999999999999999999999886
Q ss_pred Cc-hhH-HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 041050 355 HE-VNA-REMISGGALWELVRISRDCSREDIRSLAHRTL 391 (408)
Q Consensus 355 ~~-~~~-~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L 391 (408)
.- ... ..-.-...++.|+..+.+. ..++..|.+++
T Consensus 441 ~~~~~~~~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al 477 (861)
T 2bpt_A 441 SVAESIDPQQHLPGVVQACLIGLQDH--PKVATNCSWTI 477 (861)
T ss_dssp HHGGGSCTTTTHHHHHHHHHHHHTSC--HHHHHHHHHHH
T ss_pred HhhhhcCCHHHHHHHHHHHHHHhccC--hHHHHHHHHHH
Confidence 41 100 0000112466677767653 44555554443
No 67
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.08 E-value=9.2e-05 Score=79.77 Aligned_cols=178 Identities=11% Similarity=0.107 Sum_probs=118.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM 221 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~ 221 (408)
++.|.+++.+++..++..|+.+|+.+-.+..+.. .+..|+..+.++.+..+++.++.+|+.+....++..+.++
T Consensus 474 ~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li 547 (963)
T 4ady_A 474 YEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLI 547 (963)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHH
Confidence 7888899988888888889999987743332222 2455555554456778888888888877654343322221
Q ss_pred -----------hcC----------------cHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHH
Q 041050 222 -----------AQG----------------GISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLG 273 (408)
Q Consensus 222 -----------~~g----------------~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~ 273 (408)
..| .|..|+..+.++.+..+++.|+-+|+.++ +++ ..++.++.
T Consensus 548 ~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~ 618 (963)
T 4ady_A 548 TKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQ 618 (963)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTT
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHH
Confidence 111 13334444445556677777777777765 443 23444565
Q ss_pred hh-cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHH
Q 041050 274 MV-RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHL 352 (408)
Q Consensus 274 lL-~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~L 352 (408)
++ ++.++.++..|+.+|+.++. |++.. .++..|..++++.+..||..|+.+|+.+
T Consensus 619 ~L~~~~d~~VR~gAalALGli~a-----------------Gn~~~-------~aid~L~~L~~D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 619 LLSKSHNAHVRCGTAFALGIACA-----------------GKGLQ-------SAIDVLDPLTKDPVDFVRQAAMIALSMI 674 (963)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHTS-----------------SSCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhcc-----------------CCCcH-------HHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 44 67788899999999988875 44431 3566788888889999999999999999
Q ss_pred ccCchh
Q 041050 353 AQHEVN 358 (408)
Q Consensus 353 a~~~~~ 358 (408)
..+..+
T Consensus 675 g~gtnn 680 (963)
T 4ady_A 675 LIQQTE 680 (963)
T ss_dssp STTCCT
T ss_pred hcCCcc
Confidence 887544
No 68
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.06 E-value=0.0004 Score=74.87 Aligned_cols=189 Identities=19% Similarity=0.120 Sum_probs=111.5
Q ss_pred CHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHH
Q 041050 153 DANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTT 232 (408)
Q Consensus 153 ~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~l 232 (408)
++.+|..|+..|+-+..+..+. ..++.|..++.+ ++..++..|+.+|+.+-.. ..+.+ .+..|+..
T Consensus 450 ~~~ir~gAaLGLGla~~GS~~e------ev~e~L~~~L~d-d~~~~~~~AalALGli~vG-Tgn~~------ai~~LL~~ 515 (963)
T 4ady_A 450 VDVLLHGASLGIGLAAMGSANI------EVYEALKEVLYN-DSATSGEAAALGMGLCMLG-TGKPE------AIHDMFTY 515 (963)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCH------HHHHHHHHHHHT-CCHHHHHHHHHHHHHHHTT-CCCHH------HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHhc-CCHHHHHHHHHHHhhhhcc-cCCHH------HHHHHHHH
Confidence 3678888999998875433222 135667888874 4566777888888876332 22221 23445554
Q ss_pred hhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHh-----------cc----------------cHHHHHHhh-cCCCHHHH
Q 041050 233 AADAEDPQTLRMVAGAIANLC-GNDKLQMKLRS-----------EG----------------GIRALLGMV-RCGHPDVL 283 (408)
Q Consensus 233 L~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~-----------~g----------------~l~~L~~lL-~~~~~~v~ 283 (408)
+.+..+..+++.++.+|+.+. ++++....+++ .| .++.|+..+ .+.+.+++
T Consensus 516 ~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VR 595 (963)
T 4ady_A 516 SQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVR 595 (963)
T ss_dssp HHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHH
T ss_pred HhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHH
Confidence 445566677877888887776 55444332211 01 122233322 23444555
Q ss_pred HHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHh-ccCCCHHHHHHHHHHHHHHccCchhHHHH
Q 041050 284 SQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQN-ANNEAAPIRRHIELALCHLAQHEVNAREM 362 (408)
Q Consensus 284 ~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~l-L~~~~~~v~~~a~~aL~~La~~~~~~~~l 362 (408)
+.|+.+|+.+.. |++ ..++.++.+ +++.++.+|..|+++|+.++.+..+..
T Consensus 596 raAViaLGlI~~-----------------g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~-- 647 (963)
T 4ady_A 596 RAAVIALGFVLL-----------------RDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS-- 647 (963)
T ss_dssp HHHHHHHHHHTS-----------------SSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH--
T ss_pred HHHHHHHHhhcc-----------------CCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH--
Confidence 555555555543 332 357777774 467899999999999999988754421
Q ss_pred HhCCcHHHHHHHHhcCCHHHHHHHHH
Q 041050 363 ISGGALWELVRISRDCSREDIRSLAH 388 (408)
Q Consensus 363 ~~~g~i~~L~~ll~~~~~~~~~~~A~ 388 (408)
++..|..++.+. +++++..|.
T Consensus 648 ----aid~L~~L~~D~-d~~Vrq~Ai 668 (963)
T 4ady_A 648 ----AIDVLDPLTKDP-VDFVRQAAM 668 (963)
T ss_dssp ----HHHHHHHHHTCS-SHHHHHHHH
T ss_pred ----HHHHHHHHccCC-CHHHHHHHH
Confidence 356677777644 444554454
No 69
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.04 E-value=1.8e-05 Score=88.96 Aligned_cols=219 Identities=12% Similarity=0.133 Sum_probs=144.6
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHcCC-chhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh---
Q 041050 141 GLHKILSLLESEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN--- 216 (408)
Q Consensus 141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~--- 216 (408)
.++.+++.|.+.+..+|..|+.+|.+++.. +. . .. ...++.|+..+.+ +++.+|..|+.+|..++...+..
T Consensus 49 il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~-~~-~~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 49 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--Y-QV-ETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--H-HH-HHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--H-HH-HHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 467888999999999999999999999862 22 1 11 1246777888774 56688999999999887542221
Q ss_pred ---HHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC--CchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHH
Q 041050 217 ---QELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG--NDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIA 291 (408)
Q Consensus 217 ---~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~--~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~ 291 (408)
.... -...+|.|+..+.+++++.++..++.++..++. .+.....+ ...++.++..+.++++.++..|+.++.
T Consensus 124 ~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~ 200 (1230)
T 1u6g_C 124 SALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALG 200 (1230)
T ss_dssp CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred cchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 1111 223578888888545788999999999999982 11111111 345667788888889999999999999
Q ss_pred HhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC-CHHHHHHHHHHHHHHccCchhHHHHH--hCCcH
Q 041050 292 NFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE-AAPIRRHIELALCHLAQHEVNAREMI--SGGAL 368 (408)
Q Consensus 292 nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~a~~aL~~La~~~~~~~~l~--~~g~i 368 (408)
.++. ..++ .+ -..+++.++..+... +..++..++.++..++..... .+. -...+
T Consensus 201 ~l~~-----------------~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~ 257 (1230)
T 1u6g_C 201 HLVM-----------------SCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKII 257 (1230)
T ss_dssp HHTT-----------------TC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHH
T ss_pred HHHH-----------------hcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHH
Confidence 9985 1111 11 124678888877554 346777888888888764211 111 24577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 041050 369 WELVRISRDCSREDIRSLAHRTL 391 (408)
Q Consensus 369 ~~L~~ll~~~~~~~~~~~A~~~L 391 (408)
+.+...+.+. ++++|..|..++
T Consensus 258 ~~ll~~l~d~-~~~vR~~a~~~l 279 (1230)
T 1u6g_C 258 PLVVKFCNVD-DDELREYCIQAF 279 (1230)
T ss_dssp HHHHHHHSSC-CTTTHHHHHHHH
T ss_pred HHHHHHhcCC-CHHHHHHHHHHH
Confidence 7888877743 334555555433
No 70
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.04 E-value=0.00045 Score=62.21 Aligned_cols=185 Identities=14% Similarity=0.037 Sum_probs=142.4
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH
Q 041050 141 GLHKILSLLESEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE 218 (408)
Q Consensus 141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~ 218 (408)
.+..++++|...|+.++..++.+|..+-. +...+..+++. .++.++.++. +.|..+.-.|+.+|..|-.+-|-..+
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~-~Ld~iI~llk-~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFINALS-QENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHHHHTCC-STTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHH-HHHHHHHHHh-ccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 47888899999999999999999999876 35556566655 7999999998 57889999999999988776454444
Q ss_pred HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccch
Q 041050 219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCES 298 (408)
Q Consensus 219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~ 298 (408)
.+.. .+..|..++. +.++-++..++..+.-+--- ..- .+.+..+.+++.++|+.++..+.+++.|++.
T Consensus 112 ~y~K--l~~aL~dlik-~~~~il~~eaae~Lgklkv~-~~~-----~~V~~~l~sLl~Skd~~vK~agl~~L~eia~--- 179 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLE-SPDDMMRIETIDVLSKLQPL-EDS-----KLVRTYINELVVSPDLYTKVAGFCLFLNMLN--- 179 (265)
T ss_dssp HHHH--HHHHHHHHTT-SCCHHHHHHHHHHHHHCCBS-CCC-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGG---
T ss_pred HHHH--HHHHHHHHhc-CCCchHHHHHHHHhCcCCcc-cch-----HHHHHHHHHHHhCCChhHHHHHHHHHHHhhc---
Confidence 4443 3567888874 78888999999999888311 111 2345568888899999999999999999985
Q ss_pred hhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc
Q 041050 299 RAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE 356 (408)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 356 (408)
+.+++... .+++.-+-.+++++++.++..|..++-.+.+.+
T Consensus 180 ------------~S~D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 180 ------------SSADSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp ------------GCSSCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred ------------ccCCHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 11222221 245667778899999999999999999988873
No 71
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.97 E-value=0.00021 Score=76.68 Aligned_cols=225 Identities=15% Similarity=0.149 Sum_probs=142.5
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHHHHHHcC-CchhH-HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhH
Q 041050 142 LHKILSLLESE--DANVRIHAVKVVANLAA-EEANQ-EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQ 217 (408)
Q Consensus 142 v~~Ll~lL~s~--~~~v~~~A~~aL~nLa~-~~~~~-~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~ 217 (408)
++.++..+.++ +..+|..|+.++.++.. -+.+- ........++.|...+. +.+..++..++.+|..++...+..-
T Consensus 181 l~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~~r~~a~~~l~~l~~~~~~~~ 259 (861)
T 2bpt_A 181 LIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQ-AEDIEVQAAAFGCLCKIMSKYYTFM 259 (861)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677766 89999999999998753 21110 00001113566666676 4688999999999998876523221
Q ss_pred HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchh------------------HHHHHhcccHHHHHHhhcC--
Q 041050 218 ELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKL------------------QMKLRSEGGIRALLGMVRC-- 277 (408)
Q Consensus 218 ~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~------------------~~~i~~~g~l~~L~~lL~~-- 277 (408)
...+....++.+...+ .+.++.++..++.++..++..... ..... ...++.++..+..
T Consensus 260 ~~~l~~~l~~~~~~~~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~ 337 (861)
T 2bpt_A 260 KPYMEQALYALTIATM-KSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQN 337 (861)
T ss_dssp HHHHHHTHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcc
Confidence 1222224455566665 567889999999999998843211 11111 3466777777753
Q ss_pred -----CCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHH
Q 041050 278 -----GHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHL 352 (408)
Q Consensus 278 -----~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~L 352 (408)
+++.++..++.+|..++.+- + +. +. ..+++.+.+.+.+.++.+|..|+++++.+
T Consensus 338 ~d~~d~~~~~r~~a~~~L~~l~~~~---------------~-~~----~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i 396 (861)
T 2bpt_A 338 EDPEDDDWNVSMSAGACLQLFAQNC---------------G-NH----IL-EPVLEFVEQNITADNWRNREAAVMAFGSI 396 (861)
T ss_dssp CC-CCCCCHHHHHHHHHHHHHHHHH---------------G-GG----GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred cccccccCcHHHHHHHHHHHHHHHc---------------c-Hh----HH-HHHHHHHHHHcCCCChhHHHHHHHHHHHH
Confidence 23578888999999988510 1 11 11 13566777788888999999999999999
Q ss_pred ccCc--hhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041050 353 AQHE--VNAREMISGGALWELVRISRDCSREDIRSLAHRTLS 392 (408)
Q Consensus 353 a~~~--~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 392 (408)
+.+. ......+. ..++.|+..+.+. ...++..|.+++.
T Consensus 397 ~~~~~~~~~~~~l~-~il~~l~~~l~d~-~~~vr~~a~~~l~ 436 (861)
T 2bpt_A 397 MDGPDKVQRTYYVH-QALPSILNLMNDQ-SLQVKETTAWCIG 436 (861)
T ss_dssp SSSSCHHHHHHHHH-HHHHHHHHGGGCS-CHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHH-HHHHHHHHHcCCC-cHHHHHHHHHHHH
Confidence 9763 22222222 4677888877754 3445555555543
No 72
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.90 E-value=0.0012 Score=62.77 Aligned_cols=185 Identities=13% Similarity=0.115 Sum_probs=135.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHH-HcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVAN-LAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~n-La~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
+..++.-|.+.+...+..++.-|.. ++.+......++..+|+..|+.+... .+..++..++.|+.+|-.+ ...-.-+
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~-~~gN~q~Y~L~AL~~LM~~-v~Gm~gv 197 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAA-ADHNYQSYILRALGQLMLF-VDGMLGV 197 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTT-SCHHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHh-cChHHHHHHHHHHHHHHhc-cccccch
Confidence 5677777778888888999999998 66689999999999999999999985 5889999999999999888 7777666
Q ss_pred Hh-cCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhc-------c---cHHHHHHhhc---CCCHHHHHH
Q 041050 221 MA-QGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSE-------G---GIRALLGMVR---CGHPDVLSQ 285 (408)
Q Consensus 221 ~~-~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~-------g---~l~~L~~lL~---~~~~~v~~~ 285 (408)
+. ...|..+..++. +.++.|.+.|+..|..++ .++.+...+.+. . -...|+.+|. +.|.+++-+
T Consensus 198 vs~~~fI~~lyslv~-s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 198 VAHSDTIQWLYTLCA-SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hCCHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 64 456778888885 688999999999999999 555454443321 1 2667889996 678898888
Q ss_pred HHHHHHHhhccchhhhhHHHhhhhhccCChh----hHHHHHhcCcHHHHHHhccCC--CHHHHHH
Q 041050 286 VARGIANFAKCESRAATQVRFIRCTATGVKS----GRSLLIEDGALPWIVQNANNE--AAPIRRH 344 (408)
Q Consensus 286 a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~----~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~ 344 (408)
|...|-.+-. . +++.+ ....+-+.|+=..+..++.+. +++++.+
T Consensus 277 amtLIN~lL~--------------~-apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 277 TVTLINKTLA--------------A-LPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHH--------------H-CSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHHh--------------c-CCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 7655544432 1 12223 223334556556667777654 6666554
No 73
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.84 E-value=0.0006 Score=62.00 Aligned_cols=141 Identities=15% Similarity=0.101 Sum_probs=108.0
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH
Q 041050 142 LHKILSLLE-SEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE 218 (408)
Q Consensus 142 v~~Ll~lL~-s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~ 218 (408)
++.|...+. +.+..++..|+.+|+.|+. .+.....+.. .+|.|+..+. +.++.+|..|..+|.+++.. ... .
T Consensus 58 ~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~--ilp~ll~~l~-d~~~~vr~~a~~aL~~~~~~-~~~-~ 132 (242)
T 2qk2_A 58 VSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA--CVPSLLEKFK-EKKPNVVTALREAIDAIYAS-TSL-E 132 (242)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHGGG-CCCHHHHHHHHHHHHHHHTT-SCH-H
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHc-CCH-H
Confidence 566778884 8999999999999999986 3333332222 5899999998 46889999999999999876 322 1
Q ss_pred HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CC-ch--hHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050 219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GN-DK--LQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFA 294 (408)
Q Consensus 219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~-~~--~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~ 294 (408)
..++.+...+ .+.++.++..++..|..+. .. +. ....+ ...++.|+.++.++++.++..|..++..++
T Consensus 133 -----~ll~~l~~~l-~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 133 -----AQQESIVESL-SNKNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp -----HHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 2356677777 4678999999999999965 32 32 22333 257888999999999999999999999998
Q ss_pred c
Q 041050 295 K 295 (408)
Q Consensus 295 ~ 295 (408)
.
T Consensus 205 ~ 205 (242)
T 2qk2_A 205 K 205 (242)
T ss_dssp H
T ss_pred H
Confidence 5
No 74
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.80 E-value=5.9e-05 Score=84.80 Aligned_cols=208 Identities=13% Similarity=0.112 Sum_probs=138.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhH-HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChh-hHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQ-EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEA-NQEL 219 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~-~~~~ 219 (408)
++.++.-+.+++.++|..|...|.+....+... ..-.....++.|+..|. +.++.+|..|+.+|.+++...+. ...
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~~~~~- 85 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKEYQVE- 85 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCHHHHH-
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCHHHHH-
Confidence 677888888999999999999998865422110 00001124677888887 57899999999999999875332 111
Q ss_pred HHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCch-----hHHHHHhcccHHHHHHhhc-CCCHHHHHHHHHHHH
Q 041050 220 IMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC--GNDK-----LQMKLRSEGGIRALLGMVR-CGHPDVLSQVARGIA 291 (408)
Q Consensus 220 i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~--~~~~-----~~~~i~~~g~l~~L~~lL~-~~~~~v~~~a~~aL~ 291 (408)
..++.|+..+ .++++.++..++.+|..++ ..+. ..... -...++.|...+. ++++.++..|+.++.
T Consensus 86 ----~i~~~Ll~~l-~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 86 ----TIVDTLCTNM-LSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp ----HHHHHHHHHT-TCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 2356677776 4566688989999999987 2222 11111 2356788888887 588999999999999
Q ss_pred HhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHH
Q 041050 292 NFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWEL 371 (408)
Q Consensus 292 nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L 371 (408)
.++....+.. .+ + -..+++.+...+.++++.+|..|+.+|..++...... + -...++.|
T Consensus 160 ~~~~~~~~~l------------~~-~-----~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~~l 218 (1230)
T 1u6g_C 160 DMLSRQGGLL------------VN-F-----HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHL 218 (1230)
T ss_dssp HHHHHTCSSC------------TT-T-----HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHH
T ss_pred HHHHHhHhHH------------HH-H-----HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHH
Confidence 9874100000 00 0 1246778888888889999999999999999763321 1 22346666
Q ss_pred HHHHhcC
Q 041050 372 VRISRDC 378 (408)
Q Consensus 372 ~~ll~~~ 378 (408)
+..+...
T Consensus 219 ~~~L~~~ 225 (1230)
T 1u6g_C 219 LSELSKN 225 (1230)
T ss_dssp HHHHHHT
T ss_pred HHHhccC
Confidence 6665543
No 75
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00012 Score=67.40 Aligned_cols=189 Identities=13% Similarity=0.127 Sum_probs=128.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHH-HcC-CchhH---HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC--hhhH
Q 041050 145 ILSLLESEDANVRIHAVKVVAN-LAA-EEANQ---EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNA--EANQ 217 (408)
Q Consensus 145 Ll~lL~s~~~~v~~~A~~aL~n-La~-~~~~~---~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~--~~~~ 217 (408)
+.+.+.+.+-.-|..|+..|.. +.. .+... .... ..+..|...+..+.+..++..|+.+|..|+..- +...
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~--~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYS--NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCH--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence 3456688999999999999999 863 33211 0111 126677778843578899999999999998641 1111
Q ss_pred -HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050 218 -ELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC--GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFA 294 (408)
Q Consensus 218 -~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~ 294 (408)
.... -.+|.++..+ ....+.++..+..++..++ .++.. ..-.=...++.|...+.++++.++..++.+|..+.
T Consensus 99 ~~y~~--~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~-~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 99 KDYVS--LVFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLA-SSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM 174 (249)
T ss_dssp HHHHH--HHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTC-TTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccc-cCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 1111 1578888887 4566899999999999998 33211 00000124556888888889999999999999988
Q ss_pred ccchhhhhHHHhhhhhccCC-hhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050 295 KCESRAATQVRFIRCTATGV-KSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ 354 (408)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~~-~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~ 354 (408)
... +. +..-...+...++|.|.+++...++++|..|..+++.++.
T Consensus 175 ~~~---------------~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 175 KEE---------------KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHC---------------CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHc---------------CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 510 11 0111112225789999999999999999999999999874
No 76
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.78 E-value=0.0017 Score=67.80 Aligned_cols=104 Identities=14% Similarity=0.093 Sum_probs=80.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHH--cCCCCHHHHHHHHHHHHHhccCChhhHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLL--RSFEDETIRRVAAGAIANLAMNAEANQEL 219 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL--~~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 219 (408)
+..+.+=+.++++-+|..|+++|+++.. ++ +.+ ..++.+..+| . +.++-||+.|+-++..+...+|+...
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~~-~e----~~~-~l~~~v~~~l~~~-d~~~~VRK~A~~al~kl~~~~p~~~~- 184 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVGS-RE----MAE-AFAGEIPKILVAG-DTMDSVKQSAALCLLRLYRTSPDLVP- 184 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHCC-HH----HHH-HHTTHHHHHHHCS-SSCHHHHHHHHHHHHHHHHHCGGGCC-
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccCC-HH----HHH-HHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHhChhhcC-
Confidence 4555566779999999999999999965 32 333 2468888888 5 57899999999999999876453322
Q ss_pred HHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCc
Q 041050 220 IMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GND 256 (408)
Q Consensus 220 i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~ 256 (408)
..+.++.|..+| .+.++.+...|+.++..++ .++
T Consensus 185 --~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~~~ 219 (621)
T 2vgl_A 185 --MGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQKNP 219 (621)
T ss_dssp --CCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCH
T ss_pred --chhHHHHHHHHh-CCCCccHHHHHHHHHHHHHHhCh
Confidence 247788999998 6789999999999999998 444
No 77
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.67 E-value=0.0034 Score=65.53 Aligned_cols=70 Identities=17% Similarity=0.091 Sum_probs=56.2
Q ss_pred HHHHHHhh--cCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChh
Q 041050 142 LHKILSLL--ESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEA 215 (408)
Q Consensus 142 v~~Ll~lL--~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~ 215 (408)
++.+.+++ .+.++-+|..|+.++.++.. +|+... ..+.++.|..+|. +.++.++..|+.++..++.+++.
T Consensus 148 ~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~-d~d~~V~~~a~~~l~~i~~~~~~ 220 (621)
T 2vgl_A 148 AGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLN-DQHLGVVTAATSLITTLAQKNPE 220 (621)
T ss_dssp TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhC-CCCccHHHHHHHHHHHHHHhChH
Confidence 56667888 88999999999999999887 553321 1367899999997 57899999999999999886443
No 78
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.67 E-value=0.0003 Score=68.12 Aligned_cols=209 Identities=13% Similarity=0.070 Sum_probs=108.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM 221 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~ 221 (408)
+..+.+=+.++++-+|-.|+++|+++...+- .+. ..+.+.+.|. +.++-||+.|+.+.+.|....|+..+
T Consensus 106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m-~~~-----l~~~lk~~L~-d~~pyVRk~A~l~~~kL~~~~pe~v~--- 175 (355)
T 3tjz_B 106 TSSLTKDMTGKEDSYRGPAVRALCQITDSTM-LQA-----IERYMKQAIV-DKVPSVSSSALVSSLHLLKCSFDVVK--- 175 (355)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT-HHH-----HHHHHHHHHT-CSSHHHHHHHHHHHHHHTTTCHHHHH---
T ss_pred HHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH-HHH-----HHHHHHHHcC-CCCHHHHHHHHHHHHHHhccCHHHHH---
Confidence 5666677788999999999999999876432 111 3566777777 57899999999999999877565432
Q ss_pred hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCch-hHHHHHh---cc-----------------------------cH
Q 041050 222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDK-LQMKLRS---EG-----------------------------GI 268 (408)
Q Consensus 222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~-~~~~i~~---~g-----------------------------~l 268 (408)
+.+..+-+++ .+.++.+..+|.+++..++.++. .-..++. .+ .+
T Consensus 176 --~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~ 252 (355)
T 3tjz_B 176 --RWVNEAQEAA-SSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLF 252 (355)
T ss_dssp --TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------------
T ss_pred --HHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHH
Confidence 4677788887 56788888899999998885332 1111110 11 12
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHH
Q 041050 269 RALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELA 348 (408)
Q Consensus 269 ~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~a 348 (408)
+.|...|++.++.|..+|++++..+.. .+. ... ..++..|..++.+.++.+|--|...
T Consensus 253 ~~l~~~L~~~~~aVvyEa~k~I~~l~~------------------~~~---~~~-~~a~~~L~~fLss~d~niryvaLr~ 310 (355)
T 3tjz_B 253 DFIESCLRNKHEMVVYEAASAIVNLPG------------------CSA---KEL-APAVSVLQLFCSSPKAALRYAAVRT 310 (355)
T ss_dssp ----CCCCCSSHHHHHHHHHHHTC---------------------------------CCCTHHHHHHSSSSSSHHHHHHC
T ss_pred HHHHHHHcCCChHHHHHHHHHHHhccC------------------CCH---HHH-HHHHHHHHHHHcCCCchHHHHHHHH
Confidence 223333344455555566666655542 111 111 2345667777888888888888888
Q ss_pred HHHHccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHH
Q 041050 349 LCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHRT 390 (408)
Q Consensus 349 L~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~ 390 (408)
|..++...+..-.- .-..+.+++. .++..++.+|.-+
T Consensus 311 L~~l~~~~P~~v~~----~n~~ie~li~-d~n~sI~t~Aitt 347 (355)
T 3tjz_B 311 LNKVAMKHPSAVTA----CNLDLENLVT-DANRSIATLAITT 347 (355)
T ss_dssp C-----------------------------------------
T ss_pred HHHHHHHCcHHHHH----HHHHHHHHcc-CCcHhHHHHHHHH
Confidence 88888764433211 1223344444 3444566666633
No 79
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.57 E-value=0.0038 Score=60.33 Aligned_cols=224 Identities=12% Similarity=0.034 Sum_probs=141.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM 221 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~ 221 (408)
.+.+++++.+++..++.-..-.+.+++..++- .+ =++..|.+=+. ++++-+|..|+.+|+++... +-.+ .
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e--~i---Lv~Nsl~kDl~-~~N~~iR~lALRtL~~I~~~-~m~~-~-- 139 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED--VI---IVTSSLTKDMT-GKEDSYRGPAVRALCQITDS-TMLQ-A-- 139 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC--GG---GGHHHHHHHHH-SSCHHHHHHHHHHHHHHCCT-TTHH-H--
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH--HH---HHHHHHHhhcC-CCcHhHHHHHHHHHhcCCCH-HHHH-H--
Confidence 46667899999999999999999998875221 11 14677777777 47889999999999999876 3222 1
Q ss_pred hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhh
Q 041050 222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA 300 (408)
Q Consensus 222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~ 300 (408)
..+.+...+ .+.+|-|+..|+-+..+|. .+++. + .+++..+-.++.++++.|+.+|..++..+...+..+
T Consensus 140 ---l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~pe~----v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a 210 (355)
T 3tjz_B 140 ---IERYMKQAI-VDKVPSVSSSALVSSLHLLKCSFDV----V-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLA 210 (355)
T ss_dssp ---HHHHHHHHH-TCSSHHHHHHHHHHHHHHTTTCHHH----H-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---HHHHHHHHc-CCCCHHHHHHHHHHHHHHhccCHHH----H-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHH
Confidence 234555666 6789999999999999998 55543 2 268888999999999999999999999988644433
Q ss_pred hhHHHhhhhhc-cCChhhHHHHH--------------hcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhC
Q 041050 301 ATQVRFIRCTA-TGVKSGRSLLI--------------EDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISG 365 (408)
Q Consensus 301 ~~~~~~~i~~~-~~~~~~~~~i~--------------~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~ 365 (408)
...++..+... ..++-.+-.++ ....++.+...+++.++.|..+|+.++..+...+.. . -.
T Consensus 211 ~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~---~-~~ 286 (355)
T 3tjz_B 211 VSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK---E-LA 286 (355)
T ss_dssp HHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---H-HH
Confidence 32222211110 00111111111 124566777788888999999999999998663221 1 13
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHH
Q 041050 366 GALWELVRISRDCSREDIRSLAHR 389 (408)
Q Consensus 366 g~i~~L~~ll~~~~~~~~~~~A~~ 389 (408)
.++..|..++.++++ .++=.|.+
T Consensus 287 ~a~~~L~~fLss~d~-niryvaLr 309 (355)
T 3tjz_B 287 PAVSVLQLFCSSPKA-ALRYAAVR 309 (355)
T ss_dssp -CCCTHHHHHHSSSS-SSHHHHHH
T ss_pred HHHHHHHHHHcCCCc-hHHHHHHH
Confidence 345666777764433 44444553
No 80
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.57 E-value=0.0064 Score=57.80 Aligned_cols=181 Identities=12% Similarity=0.031 Sum_probs=126.7
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHH-hccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHH-
Q 041050 186 LLMLLRSFEDETIRRVAAGAIAN-LAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLR- 263 (408)
Q Consensus 186 L~~lL~~~~~~~v~~~A~~aL~n-La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~- 263 (408)
++.-|.+ .+...++.++.-|.. ++.+ .+....|+..+|+..|+.... ..+..++..+++++.+|......-..++
T Consensus 123 iiekL~~-~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~GL~~Li~vi~-~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 123 ILEKLYS-SSGPELRRSLFSLKQIFQED-KDLVPEFVHSEGLSCLIRVGA-AADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHH-CCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTHHHHHHHHHT-TSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHhc-CCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhccHHHHHHHHH-hcChHHHHHHHHHHHHHHhccccccchhC
Confidence 3444443 356667778888888 6667 999999999999999999984 4688999999999999998777776666
Q ss_pred hcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcC--cHHHHHHhcc---CCC
Q 041050 264 SEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDG--ALPWIVQNAN---NEA 338 (408)
Q Consensus 264 ~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g--~l~~Lv~lL~---~~~ 338 (408)
....++.|..++.+.+..|.+.|+..|.+++..+.... .++ .......-.+.| -.+.|+.+|+ +.+
T Consensus 200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~-~lv--------~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D 270 (339)
T 3dad_A 200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNA-PLF--------IRAVNSVASTTGAPPWANLVSILEEKNGAD 270 (339)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGH-HHH--------HHHHHHHHHHHCCCTTHHHHHHHTTTTSCC
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccc-hHH--------HHHHHHhhhccCCCcHHHHHHHHhccCCCC
Confidence 45688999999998899999999999999985221111 110 001111112223 3668889997 679
Q ss_pred HHHHHHHHHHHHHHccC-c--hhHHHHH----hCCcHHHHHHHHhcC
Q 041050 339 APIRRHIELALCHLAQH-E--VNAREMI----SGGALWELVRISRDC 378 (408)
Q Consensus 339 ~~v~~~a~~aL~~La~~-~--~~~~~l~----~~g~i~~L~~ll~~~ 378 (408)
.+++.+|...|..+-.. + +....++ +.|.-..+.+.+...
T Consensus 271 ~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~ 317 (339)
T 3dad_A 271 PELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTA 317 (339)
T ss_dssp HHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhcc
Confidence 99999988766655443 2 2233443 566666777766654
No 81
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.56 E-value=0.00066 Score=67.61 Aligned_cols=142 Identities=11% Similarity=0.131 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHHHHHcCCchhHHHHHHhCCH--HHHHHHHcCCCCHHHHHHHHHHHHHhccCCh----h-hHHHHHhcCc
Q 041050 153 DANVRIHAVKVVANLAAEEANQEKIVEAGGL--SSLLMLLRSFEDETIRRVAAGAIANLAMNAE----A-NQELIMAQGG 225 (408)
Q Consensus 153 ~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i--~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~----~-~~~~i~~~g~ 225 (408)
...++.+++-+++-|+++++....+...+.. +.|+.+++.+.-+.+.+.++.++.|+....+ . ..+.++..++
T Consensus 241 ~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~ 320 (480)
T 1ho8_A 241 GIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA 320 (480)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH
T ss_pred cHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc
Confidence 3567899999999999998888888776533 6777778876778999999999999988632 1 1223322332
Q ss_pred ----------------------------------------------------------------------------HHHH
Q 041050 226 ----------------------------------------------------------------------------ISLL 229 (408)
Q Consensus 226 ----------------------------------------------------------------------------i~~L 229 (408)
+..|
T Consensus 321 l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L 400 (480)
T 1ho8_A 321 LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQL 400 (480)
T ss_dssp HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHH
T ss_pred hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHH
Confidence 2334
Q ss_pred HHHhhc---------CCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050 230 STTAAD---------AEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFA 294 (408)
Q Consensus 230 v~lL~~---------~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~ 294 (408)
+.+|.+ +.||.+...||.=|+.++ ..|..+..+-+.|+=..++.++.++|++|+.+|..|+.-+.
T Consensus 401 ~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 401 IELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 445532 236777888888888888 78889988888999899999999999999999999998775
No 82
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.002 Score=59.26 Aligned_cols=150 Identities=8% Similarity=0.024 Sum_probs=105.8
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHHcC--C-chhH-HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh
Q 041050 142 LHKILSLL-ESEDANVRIHAVKVVANLAA--E-EANQ-EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN 216 (408)
Q Consensus 142 v~~Ll~lL-~s~~~~v~~~A~~aL~nLa~--~-~~~~-~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~ 216 (408)
+..|...+ +..+..++..|+.+|+.|+. . +... ..... .+|.++..+. +..+.|+..+..++-+++...+..
T Consensus 62 ~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~--llp~ll~~l~-dkk~~V~~aa~~al~~i~~~~~~~ 138 (249)
T 2qk1_A 62 LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL--VFTPLLDRTK-EKKPSVIEAIRKALLTICKYYDPL 138 (249)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH--HHHHHHHGGG-CCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH--HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcccc
Confidence 56667778 68999999999999999985 3 3333 23322 4899999998 456889999888888877642110
Q ss_pred HHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC-Cchh-HH--HHHhcccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 041050 217 QELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG-NDKL-QM--KLRSEGGIRALLGMVRCGHPDVLSQVARGIAN 292 (408)
Q Consensus 217 ~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~-~~~~-~~--~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~n 292 (408)
...-.=...++.|+..| .+..+.++..++.+|..++. .+.. .. .......++.|...+...++.|+..|..++..
T Consensus 139 ~~~~~l~~ll~~l~~~l-~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~ 217 (249)
T 2qk1_A 139 ASSGRNEDMLKDILEHM-KHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAI 217 (249)
T ss_dssp CTTCTTHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 00000001456677777 55689999999999999982 2221 11 22224678899999999999999999999999
Q ss_pred hhc
Q 041050 293 FAK 295 (408)
Q Consensus 293 L~~ 295 (408)
++.
T Consensus 218 i~~ 220 (249)
T 2qk1_A 218 LIK 220 (249)
T ss_dssp HHH
T ss_pred HHH
Confidence 885
No 83
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.38 E-value=0.0096 Score=53.64 Aligned_cols=146 Identities=12% Similarity=0.127 Sum_probs=112.3
Q ss_pred HHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccC
Q 041050 134 TKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMN 212 (408)
Q Consensus 134 ~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~ 212 (408)
+...=...+|.++.++++.|+.+-..|+++|..|-. .|-.-..+... +..|..++. +.++-.+..|+..+.-+..-
T Consensus 69 ~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl--~~aL~dlik-~~~~il~~eaae~Lgklkv~ 145 (265)
T 3b2a_A 69 RMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKA--AKTLVSLLE-SPDDMMRIETIDVLSKLQPL 145 (265)
T ss_dssp HHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHH--HHHHHHHTT-SCCHHHHHHHHHHHHHCCBS
T ss_pred cHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHHHhc-CCCchHHHHHHHHhCcCCcc
Confidence 334444568999999999999999999999998876 45455555443 677888888 57888999999999988433
Q ss_pred ChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh---CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHH
Q 041050 213 AEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC---GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARG 289 (408)
Q Consensus 213 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~---~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~a 289 (408)
...+ +.+..+..++ .+.++.+...+.+++.|++ .|++.-..+ +.-+..+++++|+.+++.|..+
T Consensus 146 -~~~~------~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~D~~i~~~I-----~~eI~elL~~eD~~l~e~aLd~ 212 (265)
T 3b2a_A 146 -EDSK------LVRTYINELV-VSPDLYTKVAGFCLFLNMLNSSADSGHLTLI-----LDEIPSLLQNDNEFIVELALDV 212 (265)
T ss_dssp -CCCH------HHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCSSCCCGGGT-----TTTHHHHHTCSCHHHHHHHHHH
T ss_pred -cchH------HHHHHHHHHH-hCCChhHHHHHHHHHHHhhcccCCHHHHHHH-----HHHHHHHHcCCCHHHHHHHHHH
Confidence 1122 2356778888 8899999999999999998 344444434 3348889999999999999999
Q ss_pred HHHhhc
Q 041050 290 IANFAK 295 (408)
Q Consensus 290 L~nL~~ 295 (408)
+..+..
T Consensus 213 Le~ils 218 (265)
T 3b2a_A 213 LEKALS 218 (265)
T ss_dssp HHHHTT
T ss_pred HHHHHc
Confidence 999874
No 84
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.33 E-value=0.0087 Score=51.95 Aligned_cols=136 Identities=15% Similarity=0.124 Sum_probs=106.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
||.+..-+.-+++.++..-..+|..++. +|+.-..++ ..+..++. +.|..-+-.|+.++..+..+++.....
T Consensus 109 Vp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~-----rdi~smlt-skd~~Dkl~aLnFi~alGen~~~yv~P- 181 (253)
T 2db0_A 109 IPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIV-----RDFMSMLS-SKNREDKLTALNFIEAMGENSFKYVNP- 181 (253)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHH-----HHHHHHTS-CSSHHHHHHHHHHHHTCCTTTHHHHGG-
T ss_pred HHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHH-----HHHHHHhc-CCChHHHHHHHHHHHHHhccCccccCc-
Confidence 5556666667899999999999999987 787665554 45778887 467777888889998888875443333
Q ss_pred HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
-+|.|..+| .+.++-++..++.+|.|++ .|+..|..+.+ .+.-+...+..+++.+-.+|+-++.
T Consensus 182 ----fLprL~aLL-~D~deiVRaSaVEtL~~lA~~npklRkii~~------kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 182 ----FLPRIINLL-HDGDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp ----GHHHHHGGG-GCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH------HHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred ----chHHHHHHH-cCcchhhhHHHHHHHHHHHHcCHHHHHHHHH------HHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 378999998 6688899999999999999 88888887765 5666677888899888888888764
No 85
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.46 E-value=0.22 Score=54.22 Aligned_cols=243 Identities=14% Similarity=0.136 Sum_probs=153.6
Q ss_pred cCHHHHHHhhcCCCHHHHHHHHHHHHHHcC----CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC-h
Q 041050 140 VGLHKILSLLESEDANVRIHAVKVVANLAA----EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNA-E 214 (408)
Q Consensus 140 ~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~----~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~ 214 (408)
+.++.+...+...... +.|+.++..|+. .+..-..++ +.+|.++..+. +....|+..|..++..+...- +
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~-dk~~~v~~aa~~~~~~~~~~~~~ 128 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAG-NKDKEIQSVASETLISIVNAVNP 128 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHSCG
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhCCH
Confidence 3456666666643333 889999999984 123323333 46899999888 467889998887777665432 3
Q ss_pred hhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050 215 ANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFA 294 (408)
Q Consensus 215 ~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~ 294 (408)
.... ..+|.|+..|..+..=.....++.++..|+.....+....=...+|.+...+..-.++|.+.|..++..+|
T Consensus 129 ~a~~-----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~ 203 (986)
T 2iw3_A 129 VAIK-----ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKAT 203 (986)
T ss_dssp GGHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHG
T ss_pred HHHH-----HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHH
Confidence 3332 24788998886655667888999999999843322222223457888888888888999999999999998
Q ss_pred cc-chhhhhHHH----hhhhhccCChhhHHHHHhc--------C----cHHHHHHhccCCCHHHHHHHHHHHHHHccCch
Q 041050 295 KC-ESRAATQVR----FIRCTATGVKSGRSLLIED--------G----ALPWIVQNANNEAAPIRRHIELALCHLAQHEV 357 (408)
Q Consensus 295 ~~-~~~~~~~~~----~~i~~~~~~~~~~~~i~~~--------g----~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~ 357 (408)
.+ ++.....+. .++.+.-..+++...+... - .+|.|..-|+.....+++.++.++-|||.=-+
T Consensus 204 ~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~ 283 (986)
T 2iw3_A 204 ETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVE 283 (986)
T ss_dssp GGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCC
T ss_pred hcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcC
Confidence 74 222222222 2222211122222222211 1 23444555555688899999999999997422
Q ss_pred hHHH--HHhCCcHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041050 358 NARE--MISGGALWELVRISRDCSREDIRSLAHRTLS 392 (408)
Q Consensus 358 ~~~~--l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 392 (408)
+-.. -.--..+|.|.+....-+..+.|..|.+++.
T Consensus 284 ~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~ 320 (986)
T 2iw3_A 284 DPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALK 320 (986)
T ss_dssp CHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHH
T ss_pred CHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHH
Confidence 2222 2245578888888877777777777765553
No 86
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.31 E-value=0.14 Score=48.22 Aligned_cols=181 Identities=10% Similarity=0.063 Sum_probs=109.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHH----HHHcCCCCHHHHHHHHHHHHHhccCChhhHH
Q 041050 143 HKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLL----MLLRSFEDETIRRVAAGAIANLAMNAEANQE 218 (408)
Q Consensus 143 ~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~----~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~ 218 (408)
..+..++ +=..+.+.-++.+++-++.++.....+.+...-..++ ..+.+..++..+-.++.+++|+..+ +..+.
T Consensus 106 ~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~~ 183 (304)
T 3ebb_A 106 QILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAGQK 183 (304)
T ss_dssp HHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHHH
T ss_pred HHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chhHH
Confidence 4444444 3333455556666666555666555555443333333 3333334567788899999999999 88888
Q ss_pred HHHhcC--cHHHHHHHhhcCCCHHHHHHHHHHHHHHhCC----chhHHHHHhcccHHHHHHhhc-CCCHHHHHHHHHHHH
Q 041050 219 LIMAQG--GISLLSTTAADAEDPQTLRMVAGAIANLCGN----DKLQMKLRSEGGIRALLGMVR-CGHPDVLSQVARGIA 291 (408)
Q Consensus 219 ~i~~~g--~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~----~~~~~~i~~~g~l~~L~~lL~-~~~~~v~~~a~~aL~ 291 (408)
.+.... .++.+...+ .+.+..++..++.++.|++.. ... +. ....+..+..++. ..|++....++-||+
T Consensus 184 ~l~~~~~~il~~~~~~~-~~~nknl~iA~ATl~~NlAv~~~~~~~~-~~--~~~ll~~l~~il~~~~d~EalyR~LvALG 259 (304)
T 3ebb_A 184 LMMSQRESLMSHAIELK-SGSNKNIHIALATLALNYSVCFHKDHNI-EG--KAQCLSLISTILEVVQDLEATFRLLVALG 259 (304)
T ss_dssp HHHHTHHHHHHHHHGGG-SSCCHHHHHHHHHHHHHHHHHHHHSCCH-HH--HHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHhhcCCc-hH--HHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 877531 222333332 456789999999999999821 111 11 1114455555663 568899999999999
Q ss_pred HhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC-CCHHHHHHHH
Q 041050 292 NFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN-EAAPIRRHIE 346 (408)
Q Consensus 292 nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v~~~a~ 346 (408)
+|.. ++.+.++.....|+...+-..... .++.|...+-
T Consensus 260 tL~~-----------------~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~ 298 (304)
T 3ebb_A 260 TLIS-----------------DDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCR 298 (304)
T ss_dssp HHHT-----------------TCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHH
T ss_pred HHHh-----------------CChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHH
Confidence 9996 455555555555666665555554 3555555443
No 87
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.17 E-value=0.14 Score=48.20 Aligned_cols=189 Identities=14% Similarity=0.073 Sum_probs=117.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHH----HHhhcCCCHHHHHHHHHHHHHHhCCchh
Q 041050 183 LSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLS----TTAADAEDPQTLRMVAGAIANLCGNDKL 258 (408)
Q Consensus 183 i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv----~lL~~~~~~~v~~~a~~aL~nL~~~~~~ 258 (408)
+..+..++. =+.+.+--++..++-+..+ +.....+.+.+.-..++ ..+.....|.-+..++++++|+..++..
T Consensus 105 l~~l~kil~--WP~~~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g 181 (304)
T 3ebb_A 105 LQILWKAIN--CPEDIVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAG 181 (304)
T ss_dssp HHHHHHHHT--SCTTTCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHH
T ss_pred HHHHHHHHc--CCHHhHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchh
Confidence 455555553 2334555566777777776 76666665543333333 3333334567788999999999999999
Q ss_pred HHHHHhc--ccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC
Q 041050 259 QMKLRSE--GGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN 336 (408)
Q Consensus 259 ~~~i~~~--g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~ 336 (408)
++.+... ..++.+...+.+++..++..++..+.|++..-.+. .+.+.... ++..+...+..
T Consensus 182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~------------~~~~~~~~-----ll~~l~~il~~ 244 (304)
T 3ebb_A 182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKD------------HNIEGKAQ-----CLSLISTILEV 244 (304)
T ss_dssp HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHS------------CCHHHHHH-----HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhc------------CCchHHHH-----HHHHHHHHHhc
Confidence 8887753 34555555556678899999999999998511100 11111111 33344444433
Q ss_pred -CCHHHHHHHHHHHHHHccCchhHHHHH-hCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 041050 337 -EAAPIRRHIELALCHLAQHEVNAREMI-SGGALWELVRISRDCSREDIRSLAHRTL 391 (408)
Q Consensus 337 -~~~~v~~~a~~aL~~La~~~~~~~~l~-~~g~i~~L~~ll~~~~~~~~~~~A~~~L 391 (408)
.+.+....+..||++|...+....+++ ..|+...+-++...+.+..+..+|.-++
T Consensus 245 ~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~ 301 (304)
T 3ebb_A 245 VQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFIL 301 (304)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 488999999999999998766666666 4555555666665544444656555444
No 88
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.40 E-value=1.9 Score=46.89 Aligned_cols=190 Identities=14% Similarity=0.064 Sum_probs=124.6
Q ss_pred cCHHHHHHhhcCCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhH
Q 041050 140 VGLHKILSLLESEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQ 217 (408)
Q Consensus 140 ~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~ 217 (408)
+-+|.++..+.+....+|..|..++..+.. ++... ...+|.|+..|.+...=+.+..|+.++..|+...+. +
T Consensus 95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~-~ 168 (986)
T 2iw3_A 95 QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD-Q 168 (986)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH-H
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH-H
Confidence 347888888888889999999988888766 44333 224899999997655567888899999999876332 2
Q ss_pred HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh---CCchhH-----------------HHHHhccc----------
Q 041050 218 ELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC---GNDKLQ-----------------MKLRSEGG---------- 267 (408)
Q Consensus 218 ~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~---~~~~~~-----------------~~i~~~g~---------- 267 (408)
-...=-..||.+...+ .+..+++...+..++..+| .|.+.. .-+...+.
T Consensus 169 ~~~~~~~~~p~~~~~~-~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~ 247 (986)
T 2iw3_A 169 VALRMPELIPVLSETM-WDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPA 247 (986)
T ss_dssp HHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHH
T ss_pred HHHhccchhcchHhhc-ccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecch
Confidence 2222224577777776 5677899999999998888 443221 01111110
Q ss_pred -----HHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC-CCHHH
Q 041050 268 -----IRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN-EAAPI 341 (408)
Q Consensus 268 -----l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v 341 (408)
+|.|.+-|+.....+++.++-.+-|||+ +..++.-...|+- ..+|-|...... .+|++
T Consensus 248 ~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~---------------lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~ 311 (986)
T 2iw3_A 248 TLSIMVPLLSRGLNERETGIKRKSAVIIDNMCK---------------LVEDPQVIAPFLG-KLLPGLKSNFATIADPEA 311 (986)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHT---------------TCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHH
T ss_pred hHHHHHHHHHhhhccCcchhheeeEEEEcchhh---------------hcCCHHHHhhhhh-hhhhHHHHHhhccCCHHH
Confidence 1222233344566667777777777765 4455554444443 567777666644 58999
Q ss_pred HHHHHHHHHHH
Q 041050 342 RRHIELALCHL 352 (408)
Q Consensus 342 ~~~a~~aL~~L 352 (408)
|..|..|+..|
T Consensus 312 r~~~~~a~~~l 322 (986)
T 2iw3_A 312 REVTLRALKTL 322 (986)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888887
No 89
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.23 E-value=0.57 Score=42.96 Aligned_cols=188 Identities=12% Similarity=0.115 Sum_probs=113.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHcCC-ch--hHHHHH-HhCC-HHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh---hh
Q 041050 145 ILSLLESEDANVRIHAVKVVANLAAE-EA--NQEKIV-EAGG-LSSLLMLLRSFEDETIRRVAAGAIANLAMNAE---AN 216 (408)
Q Consensus 145 Ll~lL~s~~~~v~~~A~~aL~nLa~~-~~--~~~~i~-~~g~-i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~---~~ 216 (408)
+-+-|.|.+=..|..|+..|..+... +. .....+ ..+. .+.+-..+. +.+..++..++.+|..++.... ..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~-DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT-DSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT-CSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 44566778888888888888766442 11 111111 1222 344555665 5788999999999887765311 11
Q ss_pred H--HHHHhcCcHHHHHHH-hhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 041050 217 Q--ELIMAQGGISLLSTT-AADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANF 293 (408)
Q Consensus 217 ~--~~i~~~g~i~~Lv~l-L~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL 293 (408)
+ ....-...++.|+.- + .+..+.++..+..++..++........ .+..+...+.+.+|.++..++..|..+
T Consensus 93 ~~~~~~~~~~~l~~lveK~l-~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGL-TSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYEL 166 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-SCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 1 112223346666653 4 456778888888888777622221111 234466777899999999988888776
Q ss_pred hccchhhhhHHHhhhhhccCChhh-HHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 294 AKCESRAATQVRFIRCTATGVKSG-RSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 294 ~~~~~~~~~~~~~~i~~~~~~~~~-~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
.. .| |.... ....+ ..+++.+..++.+.+++||..|..++..+-..
T Consensus 167 l~--------------~f-g~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 167 MA--------------AF-GLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HH--------------HH-TTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HH--------------Hh-CCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 53 00 11111 01111 13556777888999999999999999887654
No 90
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.15 E-value=2.1 Score=40.54 Aligned_cols=223 Identities=10% Similarity=0.076 Sum_probs=157.7
Q ss_pred HHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-Cch----hHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041050 134 TKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEA----NQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIAN 208 (408)
Q Consensus 134 ~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~----~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~n 208 (408)
.++...+-+..|+..|..-+-+.|..++.+..++.. ... .-..+.. --..|..++...+++++.-.+-..|..
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence 456777778899999999999999999999998876 322 2233332 222233333322455666667778888
Q ss_pred hccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcc---cHHHHHHhhcCCCHHHHH
Q 041050 209 LAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEG---GIRALLGMVRCGHPDVLS 284 (408)
Q Consensus 209 La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g---~l~~L~~lL~~~~~~v~~ 284 (408)
...+ +.....+.+.+.+-.+...+ ..+.-++..-|..++.-|- .++.........+ .+...-.++.+++--+++
T Consensus 150 cir~-e~la~~iL~~~~f~~fF~yv-~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR 227 (341)
T 1upk_A 150 CIRH-EPLAKIILWSEQFYDFFRYV-EMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR 227 (341)
T ss_dssp HHTS-HHHHHHHHHSGGGGHHHHHT-TCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHh-HHHHHHHhccHHHHHHHHHh-cCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence 8888 99999999988888888887 5677888888888888775 6555555555433 355667788999999999
Q ss_pred HHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHH----hcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchh--
Q 041050 285 QVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLI----EDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVN-- 358 (408)
Q Consensus 285 ~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~----~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~-- 358 (408)
++...|+.|-. ++.+...|. +..-+..++.+|++....++.+|..+.--++.++..
T Consensus 228 QSlKLLgelLl------------------dr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~ 289 (341)
T 1upk_A 228 QSLKLLGELLL------------------DRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQ 289 (341)
T ss_dssp HHHHHHHHHHH------------------SGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHh------------------CchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCCh
Confidence 99999999985 233333333 223467788899999999999999999998887433
Q ss_pred -HHHHH---hCCcHHHHHHHHhcC
Q 041050 359 -AREMI---SGGALWELVRISRDC 378 (408)
Q Consensus 359 -~~~l~---~~g~i~~L~~ll~~~ 378 (408)
...+. +...+..|-.+..+.
T Consensus 290 ~I~~IL~~Nr~kLl~fl~~f~~d~ 313 (341)
T 1upk_A 290 PILDILLKNQAKLIEFLSKFQNDR 313 (341)
T ss_dssp HHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCC
Confidence 23332 455555666665544
No 91
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.84 E-value=0.51 Score=42.97 Aligned_cols=168 Identities=12% Similarity=0.120 Sum_probs=118.8
Q ss_pred chhhhhhcCCCCchHHHHHHhcCHHHHHHhhcC-----CCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHc
Q 041050 119 HSQFRDSGNGQKAPITKLFEQVGLHKILSLLES-----EDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLR 191 (408)
Q Consensus 119 ~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s-----~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~ 191 (408)
.+.+++.+.++.+....+++....--|..+|+. +.+.+|-.++.+++.|.. +++....+.+.+.+|..+..++
T Consensus 76 aLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime 155 (268)
T 2fv2_A 76 ALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIME 155 (268)
T ss_dssp HHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHh
Confidence 356777777666666666666643344466653 336799999999999986 5677777788888999999998
Q ss_pred CCCCHHHHHHHHHHHHHhccCChhhHHHHHhc--------CcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHH
Q 041050 192 SFEDETIRRVAAGAIANLAMNAEANQELIMAQ--------GGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLR 263 (408)
Q Consensus 192 ~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~--------g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~ 263 (408)
. .+.--+..|..++..+-.+ +..-.-+..+ ..+..++.-+.+.+++.+.+++.++-..|+.|+..+..+.
T Consensus 156 ~-GselSKtvAtfIlqKIL~d-d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~ 233 (268)
T 2fv2_A 156 S-GSELSKTVATFILQKILLD-DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALR 233 (268)
T ss_dssp H-SCHHHHHHHHHHHHHHHHS-HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred h-ccHHHHHHHHHHHHHHhcc-chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 5 4667788888888888887 6655444322 1233344445577899999999999999999999999887
Q ss_pred hcccHHHHHHhhc--------CCCHHHHHHHHHHHHHh
Q 041050 264 SEGGIRALLGMVR--------CGHPDVLSQVARGIANF 293 (408)
Q Consensus 264 ~~g~l~~L~~lL~--------~~~~~v~~~a~~aL~nL 293 (408)
+. |...++ .+|+.+++.-...+.|+
T Consensus 234 ~~-----LP~~Lrd~tf~~~l~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 234 QC-----LPDQLKDTTFAQVLKDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HH-----SCGGGTSSTTHHHHTSCHHHHHHHHHHHHHS
T ss_pred Hh-----CcHHhhChHHHHHHhcCHHHHHHHHHHHHhc
Confidence 52 222222 35677776665666554
No 92
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.76 E-value=0.99 Score=42.75 Aligned_cols=193 Identities=17% Similarity=0.087 Sum_probs=137.2
Q ss_pred HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh----HHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHH
Q 041050 175 EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN----QELIMAQGGISLLSTTAADAEDPQTLRMVAGAIA 250 (408)
Q Consensus 175 ~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~----~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~ 250 (408)
..+...+.+..|+..|.. =+-+.|+.++.+..++....... .+-+.. -...|..++...+++++--.+-..|.
T Consensus 72 ~ei~~~dll~~Li~~l~~-L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLR 148 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQL-IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLR 148 (341)
T ss_dssp HHHHHHSHHHHHHHTGGG-SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhccc-CCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHH
Confidence 355667778888888873 57889999999988887763322 122222 13344444444455566655555555
Q ss_pred HHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcC---cH
Q 041050 251 NLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDG---AL 327 (408)
Q Consensus 251 nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g---~l 327 (408)
-....+.....+...+.+-.+......++.+|-..|..++..|-. .++.....+...+ ..
T Consensus 149 ecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt-----------------~Hk~lvaefL~~nyd~Ff 211 (341)
T 1upk_A 149 ECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLT-----------------RHKLLSAEFLEQHYDRFF 211 (341)
T ss_dssp HHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHH-----------------SSHHHHHHHHHHTHHHHH
T ss_pred HHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHh-----------------ccHHHHHHHHHHhHHHHH
Confidence 555888888888888888889999999999999999988888764 5555555665433 46
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHH----hCCcHHHHHHHHhcCCHHHHHHHHH
Q 041050 328 PWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMI----SGGALWELVRISRDCSREDIRSLAH 388 (408)
Q Consensus 328 ~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~----~~g~i~~L~~ll~~~~~~~~~~~A~ 388 (408)
...-.++.+++.-+++.+...|+.+-.+..|...|. +..-+..++.++++.+. .++-.|-
T Consensus 212 ~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk-~Iq~EAF 275 (341)
T 1upk_A 212 SEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSR-NIQFEAF 275 (341)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCH-HHHHHHH
T ss_pred HHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchh-chhhhhh
Confidence 677789999999999999999999999988776665 34456777888886543 3333333
No 93
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.68 E-value=1.7 Score=39.56 Aligned_cols=136 Identities=12% Similarity=0.100 Sum_probs=96.9
Q ss_pred HHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCC----CCHHHHHHHHHHHHHhccC-ChhhHHHHHhcCcHHHHHHH
Q 041050 158 IHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSF----EDETIRRVAAGAIANLAMN-AEANQELIMAQGGISLLSTT 232 (408)
Q Consensus 158 ~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~----~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~g~i~~Lv~l 232 (408)
.+|...|.-+|.+++.|..+++....--|.-.|... +-+-+|-.++++++.|... +++....+.+++.+|..+..
T Consensus 74 cnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLri 153 (268)
T 2fv2_A 74 CNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI 153 (268)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHH
Confidence 334445556778999999999986544444445432 1256788899999998753 37777788899999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhc--------ccHHHHH-HhhcCCCHHHHHHHHHHHHHhh
Q 041050 233 AADAEDPQTLRMVAGAIANLCGNDKLQMKLRSE--------GGIRALL-GMVRCGHPDVLSQVARGIANFA 294 (408)
Q Consensus 233 L~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~--------g~l~~L~-~lL~~~~~~v~~~a~~aL~nL~ 294 (408)
+. ..++-.+..|..++..+-.++.+-..++.. ..+..++ .+...+++.+.+++.++-.-|+
T Consensus 154 me-~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLs 223 (268)
T 2fv2_A 154 ME-SGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS 223 (268)
T ss_dssp HH-HSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred Hh-hccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 84 455667777888888888777776666541 1222233 3446889999999999999998
No 94
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=94.16 E-value=0.39 Score=45.75 Aligned_cols=127 Identities=16% Similarity=0.199 Sum_probs=97.0
Q ss_pred hhcCCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHH
Q 041050 124 DSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAA 203 (408)
Q Consensus 124 ~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~ 203 (408)
.-+-.....+.-++..+|+..+...++.++.++-+..+..|...+........-. ..-+|-++..+.-+++.++.....
T Consensus 268 ~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~eDdvvYSGT 346 (619)
T 3c2g_A 268 GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHPDDEVIYSGT 346 (619)
T ss_dssp HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCCCcceEEecc
Confidence 3344566667889999999999999999999999999999998876443321111 224788888888778889999999
Q ss_pred HHHHHhccCChhhHHHHHhcCcHHHHHHHhhcC------CCHHHHHHHHHHHHH
Q 041050 204 GAIANLAMNAEANQELIMAQGGISLLSTTAADA------EDPQTLRMVAGAIAN 251 (408)
Q Consensus 204 ~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~~v~~~a~~aL~n 251 (408)
+.|.|...++...++.-+..|+|+.|-..+.+. .+..-+..+|+.++|
T Consensus 347 GFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 347 GFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp HHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred hHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 999999999788888888999999988776533 344445556655555
No 95
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.68 E-value=2 Score=41.64 Aligned_cols=156 Identities=13% Similarity=0.106 Sum_probs=102.0
Q ss_pred CCchHHHHHHhcCHHHHHHhhc-----------CCCHHHHHHHHHHHHHHcCCchhHHHHHHhC-CHHHHHHHHcCCCCH
Q 041050 129 QKAPITKLFEQVGLHKILSLLE-----------SEDANVRIHAVKVVANLAAEEANQEKIVEAG-GLSSLLMLLRSFEDE 196 (408)
Q Consensus 129 ~~~~~~~l~~~~~v~~Ll~lL~-----------s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g-~i~~L~~lL~~~~~~ 196 (408)
....+..++ .+|+..|+..|. ..+...+...+++|..+..+......++... ++..|...|. +..+
T Consensus 99 ~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~-s~~~ 176 (383)
T 3eg5_B 99 PVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD-PAVP 176 (383)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCC-TTSH
T ss_pred ccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhC-CCch
Confidence 345556665 678888887774 2245788889999999988887888787755 4888888887 4688
Q ss_pred HHHHHHHHHHHHhccCCh-hh-HHHH----------HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCc---hh---
Q 041050 197 TIRRVAAGAIANLAMNAE-AN-QELI----------MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGND---KL--- 258 (408)
Q Consensus 197 ~v~~~A~~aL~nLa~~~~-~~-~~~i----------~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~---~~--- 258 (408)
.++..|+..|+.+|..+. .+ ...+ .+..-...++..|....+.+....+...|-.+...+ ..
T Consensus 177 ~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~ 256 (383)
T 3eg5_B 177 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVH 256 (383)
T ss_dssp HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 999999999999998732 23 3322 223345677888765566667655555555555332 22
Q ss_pred -HHHHHhcccHHHHHHhhcCCCHHHHHHH
Q 041050 259 -QMKLRSEGGIRALLGMVRCGHPDVLSQV 286 (408)
Q Consensus 259 -~~~i~~~g~l~~L~~lL~~~~~~v~~~a 286 (408)
|..+...|..+.+-.+=..+++++..+.
T Consensus 257 lR~ef~~~Gl~~il~~lr~~~~~~L~~Qi 285 (383)
T 3eg5_B 257 IRSELMRLGLHQVLQELREIENEDMKVQL 285 (383)
T ss_dssp HHHHHHHTTHHHHHHHHTTSCCHHHHHHH
T ss_pred HHHHHHHCChHHHHHHHhcCCChhHHHHH
Confidence 3444556666655543345666665543
No 96
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.59 E-value=1.4 Score=43.74 Aligned_cols=98 Identities=12% Similarity=0.118 Sum_probs=78.8
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHH
Q 041050 184 SSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLR 263 (408)
Q Consensus 184 ~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~ 263 (408)
..++..-+ .++..++.|+..|.....+.|..++.- +..++.+. +++|+.|+..|...|..+|.+ ++...+
T Consensus 32 ~~Il~~~k--g~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLc-EDed~~IR~qaik~Lp~~ck~-~~i~ki- 101 (507)
T 3u0r_A 32 QVILDGVK--GGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLC-EDEDVSIRRQAIKELPQFATG-ENLPRV- 101 (507)
T ss_dssp HHHHHGGG--SCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHH-TCSSHHHHHHHHHHGGGGCCT-TCHHHH-
T ss_pred HHHHHhcC--CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHH-hcccHHHHHHHHHhhHHHhhh-hhhhhH-
Confidence 34444444 368899999999999988888888764 67788996 778999999999999999977 554444
Q ss_pred hcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 264 SEGGIRALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 264 ~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
...|+++|..+++.-...+-.+|..|-.
T Consensus 102 ----aDvL~QlLqtdd~~E~~~V~~sL~sllk 129 (507)
T 3u0r_A 102 ----ADILTQLLQTDDSAEFNLVNNALLSIFK 129 (507)
T ss_dssp ----HHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHhccchHHHHHHHHHHHHHHh
Confidence 4568999999999888888888888875
No 97
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.46 E-value=1.5 Score=39.33 Aligned_cols=154 Identities=13% Similarity=0.131 Sum_probs=97.9
Q ss_pred chHHHHHHhcCHHHHHHhhcC-----------CCHHHHHHHHHHHHHHcCCchhHHHHHHhC-CHHHHHHHHcCCCCHHH
Q 041050 131 APITKLFEQVGLHKILSLLES-----------EDANVRIHAVKVVANLAAEEANQEKIVEAG-GLSSLLMLLRSFEDETI 198 (408)
Q Consensus 131 ~~~~~l~~~~~v~~Ll~lL~s-----------~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g-~i~~L~~lL~~~~~~~v 198 (408)
..++.+ ..+|+..|+..|.. .+.+.+..++.+|..+..+......++... ++..|...|. ++++.+
T Consensus 35 ~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~-s~~~~~ 112 (233)
T 2f31_A 35 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD-PAVPNM 112 (233)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCC-TTSHHH
T ss_pred HHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhC-CCCchH
Confidence 334444 46777777766641 135677889999999988887777787754 5888888887 578899
Q ss_pred HHHHHHHHHHhccCCh-hh-HHHHH----------hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCc---hh----H
Q 041050 199 RRVAAGAIANLAMNAE-AN-QELIM----------AQGGISLLSTTAADAEDPQTLRMVAGAIANLCGND---KL----Q 259 (408)
Q Consensus 199 ~~~A~~aL~nLa~~~~-~~-~~~i~----------~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~---~~----~ 259 (408)
+..++..|+.+|..++ .+ ...+. +..-...++..+.+..+.+....+...|-.+..++ .. |
T Consensus 113 r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR 192 (233)
T 2f31_A 113 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIR 192 (233)
T ss_dssp HHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 9999999998988733 24 33332 22234467777755566666655555555555333 22 3
Q ss_pred HHHHhcccHHHHHHhhcCCCHHHHHHH
Q 041050 260 MKLRSEGGIRALLGMVRCGHPDVLSQV 286 (408)
Q Consensus 260 ~~i~~~g~l~~L~~lL~~~~~~v~~~a 286 (408)
..+...|..+.+-.+=..+++++..+.
T Consensus 193 ~ef~~~Gl~~il~~l~~~~~~~L~~Qi 219 (233)
T 2f31_A 193 SELMRLGLHQVLQELREIENEDMKVQL 219 (233)
T ss_dssp HHHHHTTHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHCChHHHHHHHhccCCHHHHHHH
Confidence 444555555544444345667665544
No 98
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=93.41 E-value=0.063 Score=48.97 Aligned_cols=42 Identities=24% Similarity=0.229 Sum_probs=23.2
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHH
Q 041050 145 ILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAG 204 (408)
Q Consensus 145 Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~ 204 (408)
+..+++++++.||..++..| ..+.|..++. +++..||..++.
T Consensus 79 l~~L~~D~~~~VR~~aA~~L-----------------~~~~L~~ll~-D~d~~VR~~aA~ 120 (244)
T 1lrv_A 79 LTPLIRDSDEVVRRAVAYRL-----------------PREQLSALMF-DEDREVRITVAD 120 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS-----------------CSGGGGGTTT-CSCHHHHHHHHH
T ss_pred HHHHccCcCHHHHHHHHHHC-----------------CHHHHHHHHc-CCCHHHHHHHHH
Confidence 33455556666666655432 1234555555 467777776665
No 99
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=93.33 E-value=4.1 Score=44.17 Aligned_cols=183 Identities=13% Similarity=0.128 Sum_probs=96.1
Q ss_pred HhhcCC---CHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh-------h-
Q 041050 147 SLLESE---DANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE-------A- 215 (408)
Q Consensus 147 ~lL~s~---~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-------~- 215 (408)
..|.++ ++-+|..|+++|+.++..- ..+ .. ...++.++..|. ++++.|+..|+++|.+++...+ .
T Consensus 462 p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~-~l-~~~l~~l~~~L~-d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~ 537 (960)
T 1wa5_C 462 PDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA-QL-IELMPILATFLQ-TDEYVVYTYAAITIEKILTIRESNTSPAFIF 537 (960)
T ss_dssp HHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH-HH-HHHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTCBSCSSSCCBSS
T ss_pred HHhcCCCCCCceehHHHHHHHHHHHhhC-CHH-HH-HHHHHHHHHHhC-CCChhHHHHHHHHHHHHHhcccccccccccc
Confidence 444555 8999999999999988731 112 22 224778888887 4578999999999999887411 1
Q ss_pred hHHHHHh--cCcHHHHHHHhhcCC-C-HH--HHHHHHHHHHHHh--CCchhHHHHHhcccHHHHHHhh----c-CCCHHH
Q 041050 216 NQELIMA--QGGISLLSTTAADAE-D-PQ--TLRMVAGAIANLC--GNDKLQMKLRSEGGIRALLGMV----R-CGHPDV 282 (408)
Q Consensus 216 ~~~~i~~--~g~i~~Lv~lL~~~~-~-~~--v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~L~~lL----~-~~~~~v 282 (408)
.+..+.. ...++.|+.++.... . +. ....+..+|..++ ..+.....+. ..++.|...+ + .+++..
T Consensus 538 ~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~--~l~~~L~~~l~~~~~~~~~~~~ 615 (960)
T 1wa5_C 538 HKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--QLLAQFIEIVTIMAKNPSNPRF 615 (960)
T ss_dssp CGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--HHHHHHHHHHHHHTTSCCCHHH
T ss_pred cHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHhCCCCcHH
Confidence 1222210 113345556664431 0 11 1223444444443 1111111110 1223333333 2 346667
Q ss_pred HHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHH
Q 041050 283 LSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHL 352 (408)
Q Consensus 283 ~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~L 352 (408)
...+..+|+.++.. ..++.... ....++|.+...+.+...+....+..++..+
T Consensus 616 ~~~~~e~l~~l~~~----------------~~~~~~~~-~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 616 THYTFESIGAILNY----------------TQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFV 668 (960)
T ss_dssp HHHHHHHHHHHHHT----------------SCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc----------------CCcchHHH-HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 76777888887751 11222112 2335666766766655445555555554444
No 100
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=93.24 E-value=1.4 Score=39.69 Aligned_cols=129 Identities=13% Similarity=0.108 Sum_probs=87.2
Q ss_pred HhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhcc-CChhhHHHHHhcCc
Q 041050 147 SLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAM-NAEANQELIMAQGG 225 (408)
Q Consensus 147 ~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~-~~~~~~~~i~~~g~ 225 (408)
.+..++..++|..|+.+|+.+ . + . ...++.+...+..++.=.|+..++.++..++. ..++. .
T Consensus 78 ~L~~~~~deVR~~Av~lLg~~-~-~-~------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--------~ 140 (240)
T 3l9t_A 78 LAYQSDVYQVRMYAVFLFGYL-S-K-D------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--------A 140 (240)
T ss_dssp HHHTCSSHHHHHHHHHHHHHT-T-T-S------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--------T
T ss_pred HHHhCcchHHHHHHHHHHHhc-c-C-c------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--------H
Confidence 556688899999999998877 2 1 1 11356666645556677899999999998875 21431 4
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 226 ISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 226 i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
++.+.... .++++-+++.|+..+..-|.-+..+. .-.-.++.|-.+..+++.-|++.++++|..+++
T Consensus 141 l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~~~~k~--dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 141 LPIIDEWL-KSSNLHTRRAATEGLRIWTNRPYFKE--NPNEAIRRIADLKEDVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp HHHHHHHH-HCSSHHHHHHHHHHTCSGGGSTTTTT--CHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHh-cCCCHHHHHHHHHhhHHHhccchhhc--CHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence 55555654 77899999999888754342111100 001134545556667888899999999999998
No 101
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.21 E-value=1.2 Score=40.63 Aligned_cols=144 Identities=13% Similarity=0.105 Sum_probs=90.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHcC--Cch--hH--HHHHHhCCHHHHHHH-HcCCCCHHHHHHHHHHHHHhccCChh
Q 041050 143 HKILSLLESEDANVRIHAVKVVANLAA--EEA--NQ--EKIVEAGGLSSLLML-LRSFEDETIRRVAAGAIANLAMNAEA 215 (408)
Q Consensus 143 ~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~--~~--~~i~~~g~i~~L~~l-L~~~~~~~v~~~A~~aL~nLa~~~~~ 215 (408)
+.+-..+.+.|..++..++.+|..++. ... .+ ....-...+|.|+.- +. +..+.++..|..++..++.. ..
T Consensus 58 ~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~-~~k~~~~~~a~~~l~~~~~~-~~ 135 (278)
T 4ffb_C 58 TLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLT-SSRATTKTQSMSCILSLCGL-DT 135 (278)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHT-SS
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhc-CccHHHHHHHHHHHHHHHHh-cC
Confidence 334467788999999999999988764 111 11 112223347777764 55 35678888888887766543 21
Q ss_pred hHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh---CCch-hHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHH
Q 041050 216 NQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC---GNDK-LQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIA 291 (408)
Q Consensus 216 ~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~---~~~~-~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~ 291 (408)
....+ ++.++..+ .+..|.++..++..|.++. +... .....+ ..+++.+..++.+.|+.||..|..++.
T Consensus 136 ~~~~~-----~e~l~~~l-~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~ 208 (278)
T 4ffb_C 136 SITQS-----VELVIPFF-EKKLPKLIAAAANCVYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIV 208 (278)
T ss_dssp SSHHH-----HHHHGGGG-GCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHH
T ss_pred cHHHH-----HHHHHHHH-hccCHHHHHHHHHHHHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 11111 23444454 5678999998888888775 2111 111111 134556777889999999999999998
Q ss_pred Hhhc
Q 041050 292 NFAK 295 (408)
Q Consensus 292 nL~~ 295 (408)
.+..
T Consensus 209 ~ly~ 212 (278)
T 4ffb_C 209 EIYK 212 (278)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8875
No 102
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=92.75 E-value=0.69 Score=50.91 Aligned_cols=100 Identities=11% Similarity=-0.033 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCC--CH--HHHHHHHHHHHHHhCC-chhHHHHHhcccH
Q 041050 194 EDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAE--DP--QTLRMVAGAIANLCGN-DKLQMKLRSEGGI 268 (408)
Q Consensus 194 ~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~--~v~~~a~~aL~nL~~~-~~~~~~i~~~g~l 268 (408)
.+=..++.++++++.++..-......-.=...++.|+.++.... ++ .++..++++++..+.- ..+...+ ...+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHHH
Confidence 46788999999999998763222222222235677888764312 22 3444667888776621 1111111 1344
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 269 RALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 269 ~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
..|+..+..+++.++..||+++.+|+.
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~ 569 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 456666666789999999999999985
No 103
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=92.35 E-value=3.3 Score=39.47 Aligned_cols=128 Identities=13% Similarity=0.168 Sum_probs=91.9
Q ss_pred HHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh-cCCCHHHHH
Q 041050 206 IANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV-RCGHPDVLS 284 (408)
Q Consensus 206 L~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL-~~~~~~v~~ 284 (408)
|.||-++.....+-++..+|+..+.... ..+..++.+.-+..|...+........= =...++.++..+ .+++.++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDaksL~~t~-L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAKALAKTP-LENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCGGGGTSC-CTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchHHHhhcc-ccccchHHHHHhccCCCcceEE
Confidence 4455555488889999999999998887 6677788888888887776443332111 134578888877 488899999
Q ss_pred HHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhcc-C------CCHHHHHHHHHHHHHH
Q 041050 285 QVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNAN-N------EAAPIRRHIELALCHL 352 (408)
Q Consensus 285 ~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~-~------~~~~v~~~a~~aL~~L 352 (408)
...+.|+|... .....++..+..|+++.|...+. . .+..-+..||.+++|.
T Consensus 344 SGTGFLSNVVA-----------------HKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 344 SGTGFLSNVVA-----------------HKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHHHHHST-----------------TCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred ecchHHHHHHh-----------------cccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 99999999986 44555666678899998877553 2 1455566677777664
No 104
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=92.18 E-value=7.6 Score=42.03 Aligned_cols=199 Identities=11% Similarity=0.029 Sum_probs=106.4
Q ss_pred CCCHHHHHHHHHHHHHHcCC---ch----------hHHHHHHhCCHHHHHHHHcCC--CCHHHHHHHHHHHHHhccCChh
Q 041050 151 SEDANVRIHAVKVVANLAAE---EA----------NQEKIVEAGGLSSLLMLLRSF--EDETIRRVAAGAIANLAMNAEA 215 (408)
Q Consensus 151 s~~~~v~~~A~~aL~nLa~~---~~----------~~~~i~~~g~i~~L~~lL~~~--~~~~v~~~A~~aL~nLa~~~~~ 215 (408)
+++-..++.|+.+++.++.. .. .-..++. ..++..|.+. ..+-+|..|+|+|+.++..-
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~----~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-- 489 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT----KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-- 489 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH----HHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH----HHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--
Confidence 45557889999999999752 11 1111111 1223334432 27889999999999998762
Q ss_pred hHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCc--------h-hHHHHHh--cccHHHHHHhhcCCC---HH
Q 041050 216 NQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGND--------K-LQMKLRS--EGGIRALLGMVRCGH---PD 281 (408)
Q Consensus 216 ~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~--------~-~~~~i~~--~g~l~~L~~lL~~~~---~~ 281 (408)
..+. -...++.++..| .++++.|+..|+++|.+++... . .+..+.. ...++.|+.++.... +.
T Consensus 490 ~~~~--l~~~l~~l~~~L-~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~ 566 (960)
T 1wa5_C 490 TKAQ--LIELMPILATFL-QTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEK 566 (960)
T ss_dssp CHHH--HHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHH
T ss_pred CHHH--HHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCc
Confidence 1221 122467777777 4567999999999999998531 1 1222211 234455666665431 11
Q ss_pred --HHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHh----ccC-CCHHHHHHHHHHHHHHcc
Q 041050 282 --VLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQN----ANN-EAAPIRRHIELALCHLAQ 354 (408)
Q Consensus 282 --v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~l----L~~-~~~~v~~~a~~aL~~La~ 354 (408)
....+..+|..++..-.+.. ..+-.. +++.|+.. .++ +++..+..+..+|+.++.
T Consensus 567 ~~~~e~l~~al~~vv~~~~~~~-------------~p~~~~-----l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~ 628 (960)
T 1wa5_C 567 LAENEFLMRSIFRVLQTSEDSI-------------QPLFPQ-----LLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILN 628 (960)
T ss_dssp HTSCHHHHHHHHHHHHHHTTTT-------------GGGHHH-----HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhh-------------hhHHHH-----HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 22345566665543111110 001111 22333332 233 366677677888888776
Q ss_pred C--chhHHHHHhCCcHHHHHHHHhc
Q 041050 355 H--EVNAREMISGGALWELVRISRD 377 (408)
Q Consensus 355 ~--~~~~~~l~~~g~i~~L~~ll~~ 377 (408)
. ++.... .....++.+..++..
T Consensus 629 ~~~~~~~~~-~~~~~~p~~~~iL~~ 652 (960)
T 1wa5_C 629 YTQRQNLPL-LVDSMMPTFLTVFSE 652 (960)
T ss_dssp TSCGGGHHH-HHHHHHHHHHHHHHT
T ss_pred cCCcchHHH-HHHHHHHHHHHHHHh
Confidence 4 222222 234456777777664
No 105
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=91.92 E-value=3 Score=37.45 Aligned_cols=142 Identities=11% Similarity=0.121 Sum_probs=96.2
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC--CchhHHH
Q 041050 184 SSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG--NDKLQMK 261 (408)
Q Consensus 184 ~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~--~~~~~~~ 261 (408)
-.+...|-.++..++|..|+.+|..+ .. . ...++.+...+...+.=.|+..++.++..+|. +++.
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~-~--------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--- 139 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SK-D--------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--- 139 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-TT-S--------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-cC-c--------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence 34455555456678999999988877 22 1 11345554534566777899999999999873 3331
Q ss_pred HHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHH
Q 041050 262 LRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPI 341 (408)
Q Consensus 262 i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v 341 (408)
.++.+...+.++++.|++.|...+.-.+. ... +-.+++ -++|.|-.+..+++.-|
T Consensus 140 -----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~--~~~----------~k~dp~--------~ll~iL~~L~~D~s~yV 194 (240)
T 3l9t_A 140 -----ALPIIDEWLKSSNLHTRRAATEGLRIWTN--RPY----------FKENPN--------EAIRRIADLKEDVSEYV 194 (240)
T ss_dssp -----THHHHHHHHHCSSHHHHHHHHHHTCSGGG--STT----------TTTCHH--------HHHHHHHTTTTCSCHHH
T ss_pred -----HHHHHHHHhcCCCHHHHHHHHHhhHHHhc--cch----------hhcCHH--------HHHHHHHHhcCChHHHH
Confidence 56678888899999999999877765442 000 001111 25667777777788999
Q ss_pred HHHHHHHHHHHccC-chhHHHHH
Q 041050 342 RRHIELALCHLAQH-EVNAREMI 363 (408)
Q Consensus 342 ~~~a~~aL~~La~~-~~~~~~l~ 363 (408)
|+.+.++|..++.. ++-...++
T Consensus 195 rKSVan~LrD~SK~~Pd~V~~~~ 217 (240)
T 3l9t_A 195 RKSVGNALRDISKKFPDLVKIEL 217 (240)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhCHHHHHHHH
Confidence 99999999999997 45555555
No 106
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=91.70 E-value=3.4 Score=40.07 Aligned_cols=154 Identities=13% Similarity=0.133 Sum_probs=98.9
Q ss_pred chHHHHHHhcCHHHHHHhhcC-----------CCHHHHHHHHHHHHHHcCCchhHHHHHHhC-CHHHHHHHHcCCCCHHH
Q 041050 131 APITKLFEQVGLHKILSLLES-----------EDANVRIHAVKVVANLAAEEANQEKIVEAG-GLSSLLMLLRSFEDETI 198 (408)
Q Consensus 131 ~~~~~l~~~~~v~~Ll~lL~s-----------~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g-~i~~L~~lL~~~~~~~v 198 (408)
..++.+ ..+|+..|+..|.. .+...+..++.+|..|..+......++... ++..|...|. +..+.+
T Consensus 39 ~Wv~~F-~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~-s~~~~~ 116 (386)
T 2bnx_A 39 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD-PAVPNM 116 (386)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCC-TTSHHH
T ss_pred HHHHHH-HHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhC-CCCchH
Confidence 344444 35778777776641 145778889999999988777777777754 5888888887 467889
Q ss_pred HHHHHHHHHHhccCCh-hh-HHHHH----------hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCc---h----hH
Q 041050 199 RRVAAGAIANLAMNAE-AN-QELIM----------AQGGISLLSTTAADAEDPQTLRMVAGAIANLCGND---K----LQ 259 (408)
Q Consensus 199 ~~~A~~aL~nLa~~~~-~~-~~~i~----------~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~---~----~~ 259 (408)
+..++..|..+|..++ .+ ...+. +..-+..++..+.++.+.+....+...|-.|...+ . .|
T Consensus 117 r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR 196 (386)
T 2bnx_A 117 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIR 196 (386)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 9999999988888733 23 32222 22344567877766666677655555555555333 2 24
Q ss_pred HHHHhcccHHHHHHhhcCCCHHHHHHH
Q 041050 260 MKLRSEGGIRALLGMVRCGHPDVLSQV 286 (408)
Q Consensus 260 ~~i~~~g~l~~L~~lL~~~~~~v~~~a 286 (408)
..+...|..+.+-.+-...++++..+.
T Consensus 197 ~Ef~~~GL~~il~~Lr~~~~~~L~~Qi 223 (386)
T 2bnx_A 197 SELMRLGLHQVLQELREIENEDMKVQL 223 (386)
T ss_dssp HHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHCChHHHHHHHhccCChhHHHHH
Confidence 455556666654444455677766543
No 107
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=91.63 E-value=0.39 Score=48.77 Aligned_cols=202 Identities=12% Similarity=0.012 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHh
Q 041050 154 ANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTA 233 (408)
Q Consensus 154 ~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL 233 (408)
..||+.++.+|+.+-.-+.. ...+..|+..+. ...=+++-.++-.|..+ . +-... -.+.++.++..|
T Consensus 242 APVRETaAQtLGaL~hLp~e------~~IL~qLV~~l~-~~~WEVRHGGLLGLKYL-~--DLL~~---Ld~Vv~aVL~GL 308 (800)
T 3oc3_A 242 APVRDAAAYLLSRIYPLIGP------NDIIEQLVGFLD-SGDWQVQFSGLIALGYL-K--EFVED---KDGLCRKLVSLL 308 (800)
T ss_dssp CHHHHHHHHHHHHHTTTSCS------CCHHHHHTTGGG-CSCHHHHHHHHHHHHHT-G--GGCCC---HHHHHHHHHHHT
T ss_pred eehHHHHHHHHHHHHhCChh------HHHHHHHHhhcC-CCCeeehhhhHHHHHHH-H--HHHHH---HHHHHHHHHhhc
Confidence 57999999999998222222 223444554444 34567777777777777 2 22221 134566777776
Q ss_pred hcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcC-CCH-HHHHHHHHHHHHhhccchhhhhHHHhhhhhc
Q 041050 234 ADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRC-GHP-DVLSQVARGIANFAKCESRAATQVRFIRCTA 311 (408)
Q Consensus 234 ~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~-~~~-~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~ 311 (408)
.+.|.+|+..|+.+|..++ .+..-. ..+..+...|.. +|- .-...++..|+.|+.....+
T Consensus 309 -~D~DDDVRAVAAetLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a----------- 370 (800)
T 3oc3_A 309 -SSPDEDIKLLSAELLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL----------- 370 (800)
T ss_dssp -TCSSHHHHHHHHHHHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC-----------
T ss_pred -CCcccHHHHHHHHHhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc-----------
Confidence 4567799999999999998 222222 233445555532 221 12234556666665421110
Q ss_pred cCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHH-HHHHhcCCHHHHHHHHHHH
Q 041050 312 TGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWEL-VRISRDCSREDIRSLAHRT 390 (408)
Q Consensus 312 ~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L-~~ll~~~~~~~~~~~A~~~ 390 (408)
-.+...+|.|.+++++.-+.||..+..++..+. + ..++..+ .+++- .++++++.++.+.
T Consensus 371 ---------~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL-~---------~~~LRLIFQNILL-E~neeIl~lS~~V 430 (800)
T 3oc3_A 371 ---------SIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS-E---------ESIDFLVAEVVLI-EEKDEIREMAIKL 430 (800)
T ss_dssp ---------CCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC-C---------HHHHHHHHHHHHH-CSCHHHHHHHHHH
T ss_pred ---------ccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH-h---------hhHHHHHHHHHHh-CCcHHHHHHHHHH
Confidence 012378999999999999999999999998887 1 1123333 33444 5666776666643
Q ss_pred Hh-----ccHhhHHHHHhhhh
Q 041050 391 LS-----SSLTFRAEMRRLRI 406 (408)
Q Consensus 391 L~-----~~~~~~~~~~~~~~ 406 (408)
.. ..||..--+.-.|+
T Consensus 431 Wk~r~~Ll~~wi~L~MtPIGv 451 (800)
T 3oc3_A 431 LKKRRDLPKNLILHFMNVIGG 451 (800)
T ss_dssp HHTCSCCCHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcCcCCC
Confidence 32 45555555555554
No 108
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=91.14 E-value=8 Score=35.36 Aligned_cols=178 Identities=11% Similarity=0.044 Sum_probs=108.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHc---CCCCHHHHHHHHHHHHHhcc----CCh
Q 041050 143 HKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLR---SFEDETIRRVAAGAIANLAM----NAE 214 (408)
Q Consensus 143 ~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~---~~~~~~v~~~A~~aL~nLa~----~~~ 214 (408)
+.+...+-+.+..-+..|+..|..... ++ ..++.. +..++..+. -+.+..+...++.+|..+.. .+.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~~~--lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP---RSLLSN--SDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHHHT--HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 344555556677778888887775433 32 222221 333444332 13578888888888776632 101
Q ss_pred hhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050 215 ANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFA 294 (408)
Q Consensus 215 ~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~ 294 (408)
...+.-. .-.+|.|+.-+ .+..+.++..+-.++..++.- .--...++.++.-+++.++.++..++..+..+-
T Consensus 124 ~~~~~ea-~~~lP~LveKl-Gd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li 195 (266)
T 2of3_A 124 PMSQEEV-SAFVPYLLLKT-GEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYI 195 (266)
T ss_dssp CCCHHHH-HHHHHHHHHGG-GCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred cchHHHH-HHHHHHHHHHh-CCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 1111100 12468888887 445567887777766665411 001124455777778899999999998888886
Q ss_pred ccchhhhhHHHhhhhhccCChhhHHHHHhcCcH---HHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050 295 KCESRAATQVRFIRCTATGVKSGRSLLIEDGAL---PWIVQNANNEAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l---~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 355 (408)
. . .|.. ....+ |.+..++.+.+..||..|..++..+-..
T Consensus 196 ~--------------~-~G~~-------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 196 T--------------N-AGIS-------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp H--------------H-HCSG-------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred H--------------h-cCCC-------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4 0 0332 13467 9999999999999999999888765443
No 109
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=90.94 E-value=1.6 Score=47.92 Aligned_cols=139 Identities=9% Similarity=-0.020 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHHcCCch-hHHHHHHhCCHHHHHHHHcCCC----CHHHHHHHHHHHHHhccCChhhHHHHHhcCcH
Q 041050 152 EDANVRIHAVKVVANLAAEEA-NQEKIVEAGGLSSLLMLLRSFE----DETIRRVAAGAIANLAMNAEANQELIMAQGGI 226 (408)
Q Consensus 152 ~~~~v~~~A~~aL~nLa~~~~-~~~~i~~~g~i~~L~~lL~~~~----~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i 226 (408)
.+=..++.++++++.++.... ....-+=...++.|+.++.... ...++..++|+|+..+.. -.....+.. ..+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~w-l~~~~~~L~-~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRF-LKAHWNFLR-TVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHH-HHHCHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHH-HhccHHHHH-HHH
Confidence 567889999999999998432 2222222235888888886311 233444566888777665 211111111 123
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHh------cccHHHHHH----hhcCCCHHHHHHHHHHHHHhhc
Q 041050 227 SLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRS------EGGIRALLG----MVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 227 ~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~------~g~l~~L~~----lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
..|+..+ ..++|.+...|++++.+||. +++..+.. ...+..++. ....-++.-+..+..+++.+..
T Consensus 543 ~~L~~~l-~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 543 LKLFEFM-HETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp HHHHHHT-TCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHh-hcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3444444 44668999999999999993 23333432 112333333 3333456666677788887775
No 110
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=90.94 E-value=0.23 Score=45.23 Aligned_cols=34 Identities=26% Similarity=0.241 Sum_probs=17.3
Q ss_pred chhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHH
Q 041050 171 EANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGA 205 (408)
Q Consensus 171 ~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~a 205 (408)
+..|......-....|..++. ++++.||..++..
T Consensus 64 ~~VR~~AA~~l~~~~l~~L~~-D~~~~VR~~aA~~ 97 (244)
T 1lrv_A 64 WERRAIAVRYSPVEALTPLIR-DSDEVVRRAVAYR 97 (244)
T ss_dssp HHHHHHHHTTSCGGGGGGGTT-CSSHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHcc-CcCHHHHHHHHHH
Confidence 334444443322334444445 5677788777653
No 111
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=90.52 E-value=3.2 Score=33.12 Aligned_cols=63 Identities=21% Similarity=0.375 Sum_probs=44.1
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhh
Q 041050 17 AEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQL 93 (408)
Q Consensus 17 ~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 93 (408)
++++..|++.++.-...+..++-++.+++..+ ...+.||++|...|..+|.++.+++.-+-..
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~--------------edfk~KyE~E~~~r~~~E~di~~lrK~lD~~ 81 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDI--------------MRLREKLQEEMLQREEAENTLQSFRQDVDNA 81 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhhHHHHHHHHHHHHHHHHhhhcccHH
Confidence 56677777777776666666666666555443 4566788888888888888888887765443
No 112
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=90.08 E-value=9.9 Score=33.83 Aligned_cols=158 Identities=10% Similarity=0.052 Sum_probs=100.5
Q ss_pred hhhHHHHHhcCcHHHHHHHhhcC----------CCHHHHHHHHHHHHHHhCCchhHHHHHh-cccHHHHHHhhcCCCHHH
Q 041050 214 EANQELIMAQGGISLLSTTAADA----------EDPQTLRMVAGAIANLCGNDKLQMKLRS-EGGIRALLGMVRCGHPDV 282 (408)
Q Consensus 214 ~~~~~~i~~~g~i~~Lv~lL~~~----------~~~~v~~~a~~aL~nL~~~~~~~~~i~~-~g~l~~L~~lL~~~~~~v 282 (408)
..-.+.| ..+|+..|+..|... .+......++.+|..++.+......+.+ .+++..|...+.++++.+
T Consensus 34 ~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~ 112 (233)
T 2f31_A 34 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNM 112 (233)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHH
T ss_pred cHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence 3444455 467888888877521 1446677889999999988888887775 567888999999999999
Q ss_pred HHHHHHHHHHhhccch-hh-hhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC-CCHHHHHHHHHHHHHHccCchh-
Q 041050 283 LSQVARGIANFAKCES-RA-ATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN-EAAPIRRHIELALCHLAQHEVN- 358 (408)
Q Consensus 283 ~~~a~~aL~nL~~~~~-~~-~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v~~~a~~aL~~La~~~~~- 358 (408)
+..|...|+.+|.... +. ...+..|+-. . ....+..-...++..+++ .+.+.+..+...+..+...++.
T Consensus 113 r~~~leLL~~lc~~~~~~G~~~~VL~Al~~------~-~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl 185 (233)
T 2f31_A 113 MIDAAKLLSALCILPQPEDMNERVLEAMTE------R-AEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEEL 185 (233)
T ss_dssp HHHHHHHHHHHHTCSSSSCHHHHHHHHHHH------H-HHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHHHH------H-HHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCH
Confidence 9999998888875221 11 2222222111 1 112334456678887764 4566666666666656655432
Q ss_pred ------HHHHHhCCcHHHHHHHHhcCC
Q 041050 359 ------AREMISGGALWELVRISRDCS 379 (408)
Q Consensus 359 ------~~~l~~~g~i~~L~~ll~~~~ 379 (408)
+..+...|..+.+-.+-....
T Consensus 186 ~~R~~lR~ef~~~Gl~~il~~l~~~~~ 212 (233)
T 2f31_A 186 DFRVHIRSELMRLGLHQVLQELREIEN 212 (233)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHCChHHHHHHHhccCC
Confidence 233447888777776655433
No 113
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=89.42 E-value=12 Score=36.02 Aligned_cols=164 Identities=16% Similarity=0.124 Sum_probs=99.6
Q ss_pred CchhHHHHHHhCCHHHHHHHHcC----------CCCHHHHHHHHHHHHHhccCChhhHHHHHh-cCcHHHHHHHhhcCCC
Q 041050 170 EEANQEKIVEAGGLSSLLMLLRS----------FEDETIRRVAAGAIANLAMNAEANQELIMA-QGGISLLSTTAADAED 238 (408)
Q Consensus 170 ~~~~~~~i~~~g~i~~L~~lL~~----------~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~ 238 (408)
++..+..=+..+|+..|+.+|.. ..+......++.+|..|..+ ......++. .+++..|...| .++.
T Consensus 36 ~~~~Wv~~F~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL-~s~~ 113 (386)
T 2bnx_A 36 NPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAM-DPAV 113 (386)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTC-CTTS
T ss_pred CCcHHHHHHHHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHh-CCCC
Confidence 44444333346788888888742 11456677788999999888 777776665 46777777777 6788
Q ss_pred HHHHHHHHHHHHHHhCCc--hh-HHHHH----------hcccHHHHHHhhc-CCCHHHHHHHHHHHHHhhccchhhhhHH
Q 041050 239 PQTLRMVAGAIANLCGND--KL-QMKLR----------SEGGIRALLGMVR-CGHPDVLSQVARGIANFAKCESRAATQV 304 (408)
Q Consensus 239 ~~v~~~a~~aL~nL~~~~--~~-~~~i~----------~~g~l~~L~~lL~-~~~~~v~~~a~~aL~nL~~~~~~~~~~~ 304 (408)
+.++..++..|+-+|..+ .+ ...+. +..-+..++..+. ..+.+.+..++..+-.+.. .++...
T Consensus 114 ~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~-~~~dl~-- 190 (386)
T 2bnx_A 114 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT-PAEELD-- 190 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHT-TCSCHH--
T ss_pred chHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHC-CCCCHH--
Confidence 899999999999999332 34 33332 2234566777775 4455655555444444442 111100
Q ss_pred HhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHH
Q 041050 305 RFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIE 346 (408)
Q Consensus 305 ~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~ 346 (408)
.--..|..+...|+.+.+-.+=..+++++....-
T Consensus 191 --------~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Qi~ 224 (386)
T 2bnx_A 191 --------FRVHIRSELMRLGLHQVLQELREIENEDMKVQLC 224 (386)
T ss_dssp --------HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHHH
T ss_pred --------HHHHHHHHHHHCChHHHHHHHhccCChhHHHHHH
Confidence 0123466667777777665554445666655443
No 114
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=89.21 E-value=3.6 Score=44.56 Aligned_cols=184 Identities=10% Similarity=0.010 Sum_probs=98.8
Q ss_pred CCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHh--cCcHHH
Q 041050 152 EDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMA--QGGISL 228 (408)
Q Consensus 152 ~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~--~g~i~~ 228 (408)
.++.+|..++++++.++. -..+...+ . ..++.|+..|. +.++..|++++.+++.+.. ..+.. ...+..
T Consensus 518 ~~~~vr~~a~~~l~~~~~~l~~~~~~l-~-~vl~~l~~~l~----~~v~~~A~~al~~l~~~~~---~~l~p~~~~ll~~ 588 (971)
T 2x1g_F 518 LNVKLLGTALETMGSYCNWLMENPAYI-P-PAINLLVRGLN----SSMSAQATLGLKELCRDCQ---LQLKPYADPLLNA 588 (971)
T ss_dssp SCHHHHHHHHHHHHHTHHHHC----CH-H-HHHHHHHHHHH----SSCHHHHHHHHHHHHHHCH---HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhcCHHHH-H-HHHHHHHHHhC----hHHHHHHHHHHHHHHHHHH---HhccccHHHHHHH
Confidence 489999999999998876 11111111 1 13566666662 4689999999999996532 22221 123344
Q ss_pred HHHHhhcC-CCHHHHHHHHHHHHHHhCC--chhHHHHHhcccHHHHHH----hhcCC--CHHHHHHHHHHHHHhhccchh
Q 041050 229 LSTTAADA-EDPQTLRMVAGAIANLCGN--DKLQMKLRSEGGIRALLG----MVRCG--HPDVLSQVARGIANFAKCESR 299 (408)
Q Consensus 229 Lv~lL~~~-~~~~v~~~a~~aL~nL~~~--~~~~~~i~~~g~l~~L~~----lL~~~--~~~v~~~a~~aL~nL~~~~~~ 299 (408)
|..++.+. .+...+..+..+++.++.. ++.+....+ ..++.++. .+... +++.......++..|+.
T Consensus 589 l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~---- 663 (971)
T 2x1g_F 589 CHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMIST---- 663 (971)
T ss_dssp HHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH----
T ss_pred HHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----
Confidence 55666442 3567888888888888732 233332222 23344443 33322 44444555555555543
Q ss_pred hhhHHHhhhhhccCC-------hhhHHHHHhcCcHHHHHHhccC--CCHHHHHHHHHHHHHHcc
Q 041050 300 AATQVRFIRCTATGV-------KSGRSLLIEDGALPWIVQNANN--EAAPIRRHIELALCHLAQ 354 (408)
Q Consensus 300 ~~~~~~~~i~~~~~~-------~~~~~~i~~~g~l~~Lv~lL~~--~~~~v~~~a~~aL~~La~ 354 (408)
+..++....+. ++.... .-..+++.+...+.. .+.++.+.+++++..++.
T Consensus 664 ----~~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 664 ----LFSSLNTDVDEQATDQPIVQPVLL-VMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp ----HHHHHTC-------------CCHH-HHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred ----HHhhcCCCcCcccccccCCCchHH-HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 00001110000 001111 123567766666643 467899999999988664
No 115
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=88.25 E-value=1.9 Score=32.35 Aligned_cols=61 Identities=20% Similarity=0.375 Sum_probs=42.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 041050 20 IAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLT 94 (408)
Q Consensus 20 ~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 94 (408)
+..|+..++.-...+..++-|+.++ ...+...+.||++|...|..+|.++.+|+.-+-...
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~--------------~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~ 62 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNL--------------AEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNAS 62 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3455555555555555555555543 344557889999999999999999999998866554
No 116
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=88.23 E-value=8 Score=41.62 Aligned_cols=135 Identities=7% Similarity=0.066 Sum_probs=84.5
Q ss_pred cCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcC--CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHH
Q 041050 150 ESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRS--FEDETIRRVAAGAIANLAMNAEANQELIMAQGGIS 227 (408)
Q Consensus 150 ~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~--~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~ 227 (408)
.+.+-..++.++.+++.++..-... ...-++.++..+.. .+++.++..++++++.++..-..+. ... ...++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHH
Confidence 4567788999999999998732110 01224455554421 1467899999999998886522222 232 35778
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHh--cccHHHHHHhhcC--CCHHHHHHHHHHHHHhhc
Q 041050 228 LLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRS--EGGIRALLGMVRC--GHPDVLSQVARGIANFAK 295 (408)
Q Consensus 228 ~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~--~g~l~~L~~lL~~--~~~~v~~~a~~aL~nL~~ 295 (408)
.|+..|. ++.++..|+.++.++|.+ .+..+.. ...+..|..++.. -+...+..+..+++.++.
T Consensus 533 ~l~~~l~---~~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 533 LVLHALG---NPELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HHHHHTT---CGGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhC---CchHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 8888873 278999999999999921 1111211 1233445555553 256778888888888874
No 117
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=88.17 E-value=11 Score=40.58 Aligned_cols=136 Identities=9% Similarity=-0.025 Sum_probs=84.5
Q ss_pred CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh--cCCCHHHHHHHHHHHHHHhCC-chhHHHHHhcccHH
Q 041050 193 FEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAA--DAEDPQTLRMVAGAIANLCGN-DKLQMKLRSEGGIR 269 (408)
Q Consensus 193 ~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~v~~~a~~aL~nL~~~-~~~~~~i~~~g~l~ 269 (408)
+.+...+..++++++.++....... ..-++.++..+. ..++|.++..++++++.++.. .... ... ...++
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~ 532 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLP 532 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHH
T ss_pred CCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHH
Confidence 3567888999999999987632211 122344444332 225788999999999998832 1111 222 35777
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC--CHHHHHHHHH
Q 041050 270 ALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE--AAPIRRHIEL 347 (408)
Q Consensus 270 ~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~a~~ 347 (408)
.|+..+.+ +.|+..|++++.+|+.. ....+ . +. . ..++..|..++.+. +.+.+..+..
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~---~~~~l-------~--p~-----~-~~il~~l~~~l~~~~~~~~~~~~~~e 592 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRE---CKYDL-------P--PY-----A-ANIVAVSQDVLMKQIHKTSQCMWLMQ 592 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHH---TGGGC-------T--TT-----H-HHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHH---HHHHH-------H--hh-----H-HHHHHHHHHHhccCCCChHHHHHHHH
Confidence 78877743 89999999999999851 00000 0 00 0 12344555555542 5678888888
Q ss_pred HHHHHccC
Q 041050 348 ALCHLAQH 355 (408)
Q Consensus 348 aL~~La~~ 355 (408)
+++.++..
T Consensus 593 ai~~i~~~ 600 (963)
T 2x19_B 593 ALGFLLSA 600 (963)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 88888764
No 118
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=88.09 E-value=5.8 Score=43.50 Aligned_cols=134 Identities=11% Similarity=-0.013 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcC-CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh
Q 041050 157 RIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRS-FEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAA 234 (408)
Q Consensus 157 ~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~-~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~ 234 (408)
+..+..+|..++. .+. .++.. ..+.+-..+.+ ..+-..+..++++++.++.........-.-...++.|..+..
T Consensus 430 ~~~~~~~L~~l~~~~~~---~~l~~-v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~ 505 (1049)
T 3m1i_C 430 YKSEREVLVYLTHLNVI---DTEEI-MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTV 505 (1049)
T ss_dssp HHHHHHHHHHHHHHCHH---HHHHH-HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCHH---HHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHh
Confidence 4455666666664 221 11111 12334444432 246678899999999998642222111111113334444321
Q ss_pred c----CCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 235 D----AEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 235 ~----~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
. .++|.++..++++++.++..-....... ...++.|+..+.++++.|+..|+.++.+|+.
T Consensus 506 ~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l-~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 506 KKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1 1233344457788887762111111121 1356667777788889999999999999985
No 119
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=87.75 E-value=2.7 Score=46.37 Aligned_cols=163 Identities=11% Similarity=0.029 Sum_probs=101.9
Q ss_pred HHHHHHhhcC----CCHHHHHHHHHHHHHHcC----CchhHHHHHHhCCHHHHH----HHHcCCCCHHHHHHHHHHHHHh
Q 041050 142 LHKILSLLES----EDANVRIHAVKVVANLAA----EEANQEKIVEAGGLSSLL----MLLRSFEDETIRRVAAGAIANL 209 (408)
Q Consensus 142 v~~Ll~lL~s----~~~~v~~~A~~aL~nLa~----~~~~~~~i~~~g~i~~L~----~lL~~~~~~~v~~~A~~aL~nL 209 (408)
+..+..++.+ .++.++..++-++++|.. +... +....++.+. ..+.. .+..-+..++.+|+|+
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~----c~~~~v~~i~~~l~~~~~~-~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVS----CPDELLQPLHDLLSQSSDR-AKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSS----CCGGGTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCC----CCHHHHHHHHHHHHHHHhc-CChHHHHHHHHHhhcc
Confidence 3444556654 567788888888877764 1110 0111234443 44453 4666777899999999
Q ss_pred ccCChhhHHHHHhcCcHHHHHHHhhc------CCCHHHHHHHHHHHHHHhCC-chhHHHHHhcccHHHHHHhh--cCCCH
Q 041050 210 AMNAEANQELIMAQGGISLLSTTAAD------AEDPQTLRMVAGAIANLCGN-DKLQMKLRSEGGIRALLGMV--RCGHP 280 (408)
Q Consensus 210 a~~~~~~~~~i~~~g~i~~Lv~lL~~------~~~~~v~~~a~~aL~nL~~~-~~~~~~i~~~g~l~~L~~lL--~~~~~ 280 (408)
... ..++.|..++.. +....++..|+++|.+++.. +.. +-+.++++. ...++
T Consensus 468 g~p-----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~ 528 (1056)
T 1lsh_A 468 GQP-----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKS 528 (1056)
T ss_dssp TCG-----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCH
T ss_pred CCh-----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcCCCCCh
Confidence 875 256777777632 22457888899999999732 222 122366666 56788
Q ss_pred HHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC-CCHHHHHHHHHHHHHHccC
Q 041050 281 DVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN-EAAPIRRHIELALCHLAQH 355 (408)
Q Consensus 281 ~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v~~~a~~aL~~La~~ 355 (408)
++|..|...|..-.- ....+..+...+.. .+..|...+...|.+++..
T Consensus 529 EvRiaA~~~Lm~t~P---------------------------~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 529 ELRIRSCIVFFESKP---------------------------SVALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HHHHHHHHHHHHTCC---------------------------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCc---------------------------CHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 898877777754321 11355667777765 4777888888888888876
No 120
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=87.47 E-value=21 Score=34.33 Aligned_cols=154 Identities=10% Similarity=0.067 Sum_probs=99.3
Q ss_pred hhHHHHHhcCcHHHHHHHhhc----------CCCHHHHHHHHHHHHHHhCCchhHHHHHh-cccHHHHHHhhcCCCHHHH
Q 041050 215 ANQELIMAQGGISLLSTTAAD----------AEDPQTLRMVAGAIANLCGNDKLQMKLRS-EGGIRALLGMVRCGHPDVL 283 (408)
Q Consensus 215 ~~~~~i~~~g~i~~Lv~lL~~----------~~~~~v~~~a~~aL~nL~~~~~~~~~i~~-~g~l~~L~~lL~~~~~~v~ 283 (408)
.-.+.|. .+|+..|+..|.. ..+....-.++.+|..+..+......+++ ..++..|...+.++.+.++
T Consensus 101 sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~ 179 (383)
T 3eg5_B 101 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM 179 (383)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHH
T ss_pred HHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHH
Confidence 3334444 5688888888742 23456777889999999988888887775 4678999999999999999
Q ss_pred HHHHHHHHHhhccch-hh-hhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC-CCHHHHHHHHHHHHHHccCchh--
Q 041050 284 SQVARGIANFAKCES-RA-ATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN-EAAPIRRHIELALCHLAQHEVN-- 358 (408)
Q Consensus 284 ~~a~~aL~nL~~~~~-~~-~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v~~~a~~aL~~La~~~~~-- 358 (408)
..|...|+.+|.-.. +. ...+..|+- ..+. ..+..-...++..+++ .+.+.+..+...+..+....+.
T Consensus 180 ~~aleLL~~lc~~~~~~gG~~~VL~Al~------~~~~-~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~ 252 (383)
T 3eg5_B 180 IDAAKLLSALCILPQPEDMNERVLEAMT------ERAE-MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD 252 (383)
T ss_dssp HHHHHHHHHHHTCCSSTTHHHHHHHHHH------HHHH-HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHHHHhCcCcCCcHHHHHHHHH------HHHH-hCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHH
Confidence 999999998885221 11 122222111 1111 2344556778888876 4666666666666556655322
Q ss_pred -----HHHHHhCCcHHHHHHHHh
Q 041050 359 -----AREMISGGALWELVRISR 376 (408)
Q Consensus 359 -----~~~l~~~g~i~~L~~ll~ 376 (408)
+..+...|..+.+..+-.
T Consensus 253 ~R~~lR~ef~~~Gl~~il~~lr~ 275 (383)
T 3eg5_B 253 FRVHIRSELMRLGLHQVLQELRE 275 (383)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHCChHHHHHHHhc
Confidence 233447888887777443
No 121
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=86.70 E-value=6.1 Score=39.23 Aligned_cols=89 Identities=17% Similarity=0.242 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHH
Q 041050 151 SEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLL 229 (408)
Q Consensus 151 s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~L 229 (408)
.++...+..|+..+..... -|+.++. ++..++.++. +++..+|..|+..|..+|.+ ++..++ +..|
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcE-Ded~~IR~qaik~Lp~~ck~--~~i~ki-----aDvL 105 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCE-DEDVSIRRQAIKELPQFATG--ENLPRV-----ADIL 105 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHT-CSSHHHHHHHHHHGGGGCCT--TCHHHH-----HHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHh-cccHHHHHHHHHhhHHHhhh--hhhhhH-----HHHH
Confidence 3467888888888877655 6777654 4777899998 57899999999999999987 444444 5678
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHh
Q 041050 230 STTAADAEDPQTLRMVAGAIANLC 253 (408)
Q Consensus 230 v~lL~~~~~~~v~~~a~~aL~nL~ 253 (408)
+.+| .++++.-...+-.+|..|-
T Consensus 106 ~QlL-qtdd~~E~~~V~~sL~sll 128 (507)
T 3u0r_A 106 TQLL-QTDDSAEFNLVNNALLSIF 128 (507)
T ss_dssp HHHT-TCCCHHHHHHHHHHHHHHH
T ss_pred HHHH-hccchHHHHHHHHHHHHHH
Confidence 8888 4666665555555554443
No 122
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=85.92 E-value=6.5 Score=35.99 Aligned_cols=128 Identities=13% Similarity=0.076 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHHHHHh---CCchhHHHHHh-cccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhc
Q 041050 236 AEDPQTLRMVAGAIANLC---GNDKLQMKLRS-EGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTA 311 (408)
Q Consensus 236 ~~~~~v~~~a~~aL~nL~---~~~~~~~~i~~-~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~ 311 (408)
+.++.+...++.+|..+. .....+..-.+ .-.+|.|+.-+-++...++..+-.++..+..
T Consensus 98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~---------------- 161 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD---------------- 161 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH----------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----------------
Confidence 467788888877777764 11111110011 2356778887777777788877777766653
Q ss_pred cCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcH---HHHHHHHhcCCHHHHHHHHH
Q 041050 312 TGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGAL---WELVRISRDCSREDIRSLAH 388 (408)
Q Consensus 312 ~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i---~~L~~ll~~~~~~~~~~~A~ 388 (408)
..--..+.+.++.-+++.+..+|..++..+..+-...--. ...++ +.+..++.+ .+..+|.+|.
T Consensus 162 --------v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D-~d~~VR~aAl 228 (266)
T 2of3_A 162 --------VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGD-KDVNVRNAAI 228 (266)
T ss_dssp --------HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGC-SSHHHHHHHH
T ss_pred --------HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcC-CCHHHHHHHH
Confidence 0011236778888889999999999998888876531111 23467 888888884 5667888888
Q ss_pred HHHh
Q 041050 389 RTLS 392 (408)
Q Consensus 389 ~~L~ 392 (408)
.++.
T Consensus 229 ~~lv 232 (266)
T 2of3_A 229 NVLV 232 (266)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 123
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=85.06 E-value=8.2 Score=41.68 Aligned_cols=165 Identities=11% Similarity=0.028 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHcC-Cc-hhHHHHHHhCCHHHHHHHHcC----CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHH
Q 041050 155 NVRIHAVKVVANLAA-EE-ANQEKIVEAGGLSSLLMLLRS----FEDETIRRVAAGAIANLAMNAEANQELIMAQGGISL 228 (408)
Q Consensus 155 ~v~~~A~~aL~nLa~-~~-~~~~~i~~~g~i~~L~~lL~~----~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~ 228 (408)
+.|..+..+|..++. .+ ..-..+ ++.+-..+.+ ..+-..+..|+.+++.++....... ...++.
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~ 505 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPR 505 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHH
Confidence 355667777777665 22 111222 1222222221 1355678889999999987632211 133444
Q ss_pred HHHHh---h-cCCCHHHHHHHHHHHHHHhCC-chhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhH
Q 041050 229 LSTTA---A-DAEDPQTLRMVAGAIANLCGN-DKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQ 303 (408)
Q Consensus 229 Lv~lL---~-~~~~~~v~~~a~~aL~nL~~~-~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~ 303 (408)
++.++ . ++.+|.++..++++++.++.. ......+ ...++.|+..+. +.++..|++++.+|+..
T Consensus 506 l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l~---~~v~~~A~~al~~l~~~------- 573 (971)
T 2x1g_F 506 LMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGLN---SSMSAQATLGLKELCRD------- 573 (971)
T ss_dssp HHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHHH---SSCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHhC---hHHHHHHHHHHHHHHHH-------
Confidence 44433 2 124889999999999998821 1111111 134555666662 78999999999999851
Q ss_pred HHhhhhhccCChhhHHHHH--hcCcHHHHHHhccCC--CHHHHHHHHHHHHHHcc
Q 041050 304 VRFIRCTATGVKSGRSLLI--EDGALPWIVQNANNE--AAPIRRHIELALCHLAQ 354 (408)
Q Consensus 304 ~~~~i~~~~~~~~~~~~i~--~~g~l~~Lv~lL~~~--~~~v~~~a~~aL~~La~ 354 (408)
++..+. -..++..+..++.++ +.+.+..+..+++.++.
T Consensus 574 -------------~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 574 -------------CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred -------------HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 111111 013444555555542 45666666666666654
No 124
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=83.97 E-value=7.4 Score=29.97 Aligned_cols=55 Identities=22% Similarity=0.204 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHh
Q 041050 34 RKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRS 88 (408)
Q Consensus 34 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 88 (408)
..+.++|+..+++.+..+..+.+.+...+...+.+|+...+.....|.++..|+.
T Consensus 39 ~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~R 93 (101)
T 3u1c_A 39 SKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNR 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333333333444444444444444444444444444443
No 125
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=83.83 E-value=7.5 Score=29.90 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhh
Q 041050 34 RKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQ 89 (408)
Q Consensus 34 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (408)
..+.++++..+++.+..+..+.+.+...+...+.+|+.........|.++..|+..
T Consensus 39 ~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRr 94 (101)
T 3u59_A 39 CKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRR 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555444443333333444444444444444444444455555554443
No 126
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.70 E-value=14 Score=28.07 Aligned_cols=69 Identities=25% Similarity=0.314 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhh
Q 041050 17 AEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLL 91 (408)
Q Consensus 17 ~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 91 (408)
.++...|+.-+..|..++...|.+...+..-++++..+ =|.+..++.-+....+..++.-...|..++.
T Consensus 25 ~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTas------LFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 25 DDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS------LFDEANNMVADARKEKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666666666666666655555555544322 1344445555555555555555555555543
No 127
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=80.57 E-value=4.4 Score=32.31 Aligned_cols=30 Identities=30% Similarity=0.501 Sum_probs=21.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 041050 20 IAEIRKLLQNEIHMRKTAEEELNKLKSRLG 49 (408)
Q Consensus 20 ~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~ 49 (408)
...++...|+|+..+...|.++..+|+.+.
T Consensus 50 ~edfk~KyE~E~~~r~~~E~di~~lrK~lD 79 (119)
T 3ol1_A 50 IMRLREKLQEEMLQREEAENTLQSFRQDVD 79 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhccc
Confidence 345666777777777777777777777765
No 128
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=79.22 E-value=69 Score=35.20 Aligned_cols=222 Identities=12% Similarity=0.117 Sum_probs=125.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccC-----Chhh
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMN-----AEAN 216 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-----~~~~ 216 (408)
++.++..+-+++.+.|..|-..|..+-.+++. .+.+..+|..+.++.+|-.|+..|.+.... +++.
T Consensus 30 Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~a---------w~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~ 100 (1073)
T 3gjx_A 30 LDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDA---------WTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQ 100 (1073)
T ss_dssp HHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCH---------HHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCchH---------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence 56677777777888899999999887665544 334444555556889999999999877552 1333
Q ss_pred HHHHHhcCcHHHHHHHhhc----CCCHHHHHHHHHHHHHHhCC--c-hhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHH
Q 041050 217 QELIMAQGGISLLSTTAAD----AEDPQTLRMVAGAIANLCGN--D-KLQMKLRSEGGIRALLGMVRCGHPDVLSQVARG 289 (408)
Q Consensus 217 ~~~i~~~g~i~~Lv~lL~~----~~~~~v~~~a~~aL~nL~~~--~-~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~a 289 (408)
+..+ ....+..+...-.+ ..++.++...+.+++.++.. + .+ .+.++-++..+.. ++......++.
T Consensus 101 ~~~L-R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W------p~fi~dLv~~~~~-~~~~~~~~L~I 172 (1073)
T 3gjx_A 101 CEGI-KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW------PTFISDIVGASRT-SESLCQNNMVI 172 (1073)
T ss_dssp HHHH-HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC------TTHHHHHHHHHHH-CHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc------cHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 3333 33344444443211 13577888888888888722 1 22 1234445555543 34555667777
Q ss_pred HHHhhccchh-hhhHHHhhhhhccCChhhHHHHHhcCcHHHHHH----hc-cCCCHHHHHHHHHHHHHHccCchhHHHHH
Q 041050 290 IANFAKCESR-AATQVRFIRCTATGVKSGRSLLIEDGALPWIVQ----NA-NNEAAPIRRHIELALCHLAQHEVNAREMI 363 (408)
Q Consensus 290 L~nL~~~~~~-~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~----lL-~~~~~~v~~~a~~aL~~La~~~~~~~~l~ 363 (408)
|..|...-.+ .+..+ .-......+..+.+. +|.++. .+ .+.++++...+..++..+...-+- ..++
T Consensus 173 L~~L~EEV~d~~~~~l-----~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i-~~i~ 244 (1073)
T 3gjx_A 173 LKLLSEEVFDFSSGQI-----TQVKAKHLKDSMCNE--FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL-GYIF 244 (1073)
T ss_dssp HHHHHHHHTTSHHHHB-----CHHHHHHHHHHHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHH
T ss_pred HHHHHHHHHhcccccc-----cHHHHHHHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH-HHhc
Confidence 7777641000 00000 000112233444432 444443 33 345788888888999998887543 4566
Q ss_pred hCCcHHHHH-HHHhcCCHHHHHHHHHHHH
Q 041050 364 SGGALWELV-RISRDCSREDIRSLAHRTL 391 (408)
Q Consensus 364 ~~g~i~~L~-~ll~~~~~~~~~~~A~~~L 391 (408)
+.+.++.|+ .++. .+..+.+|..+|
T Consensus 245 ~~~ll~~L~~~~L~---~~~~r~aA~dcL 270 (1073)
T 3gjx_A 245 ETKLISTLIYKFLN---VPMFRNVSLKCL 270 (1073)
T ss_dssp SSSHHHHHHHHTSS---SHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcC---ChHHHHHHHHHH
Confidence 777777763 5543 345666666443
No 129
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=79.02 E-value=16 Score=26.70 Aligned_cols=62 Identities=18% Similarity=0.377 Sum_probs=44.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 041050 19 DIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLT 94 (408)
Q Consensus 19 ~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 94 (408)
...+|..-|+.|+..++...+|+++.+..+- ...++|++-..+...++.++..++..+.++.
T Consensus 11 ~~leLQSALeaEIqAKQ~i~EELs~vr~~ni--------------~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 11 TLRELQEALEEEVLTRQSLSREMEAIRTDNQ--------------NFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4558999999999999999999987777643 2334555555566667777777777766643
No 130
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=78.89 E-value=1 Score=45.85 Aligned_cols=129 Identities=11% Similarity=0.134 Sum_probs=73.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCC-HHHHHHHHHHHHHhccCChhhHHHH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFED-ETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~-~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
++.++..|.+.+++||..|+.+|..++ .+..-..+ +..+-..|.+-+| ..-....+..|+.|+.. +.. .-
T Consensus 301 v~aVL~GL~D~DDDVRAVAAetLiPIA-~p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~-p~~--a~ 371 (800)
T 3oc3_A 301 CRKLVSLLSSPDEDIKLLSAELLCHFP-ITDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRE-NPE--LS 371 (800)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHTTSC-CSSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHH-CTT--CC
T ss_pred HHHHHhhcCCcccHHHHHHHHHhhhhc-chhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcC-Ccc--cc
Confidence 456667777888888888888888777 22111111 2222223332122 11223345566666655 321 00
Q ss_pred HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHH-hhcCCCHHHHHHHHHHH
Q 041050 221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLG-MVRCGHPDVLSQVARGI 290 (408)
Q Consensus 221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~-lL~~~~~~v~~~a~~aL 290 (408)
....-+|.|...+ +++-+.||..++.++..+. ....++.+.+ +|-.++++++..+..+-
T Consensus 372 ~dp~LVPRL~PFL-RHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 372 IPPERLKDIFPCF-TSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp CCSGGGGGTGGGG-TCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred cChHHHHHHHhhh-cCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 1125677777887 5577899999999997776 2234444554 34567788877666544
No 131
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=78.12 E-value=9.1 Score=32.27 Aligned_cols=76 Identities=13% Similarity=0.133 Sum_probs=46.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 041050 19 DIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLT 94 (408)
Q Consensus 19 ~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 94 (408)
.+..|-+.+++--...+.--|-..++|++..++.........-+.+++-++..+...+..++.++..|..+|.+-.
T Consensus 7 Ki~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr 82 (168)
T 3o0z_A 7 KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAER 82 (168)
T ss_dssp ---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444554444444444455556666655555555566666777777777777777888888887777776554
No 132
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=77.79 E-value=14 Score=40.42 Aligned_cols=100 Identities=9% Similarity=-0.026 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHHcCC-chhHHHHHHhCCHHHHHHHHcCC----CCHHHHHHHHHHHHHhccCChhhHHHHHhcCcH
Q 041050 152 EDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSLLMLLRSF----EDETIRRVAAGAIANLAMNAEANQELIMAQGGI 226 (408)
Q Consensus 152 ~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~L~~lL~~~----~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i 226 (408)
.+-..++.++++++.++.. ......-+-...++.|+.+.... +.+.++..++++++..+.....+. .... ..+
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~-~~l~-~vl 542 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFLR-TVI 542 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH-HHHH-HHH
Confidence 5667889999999999872 22111111111344444433211 123344357788887765412222 2222 245
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhC
Q 041050 227 SLLSTTAADAEDPQTLRMVAGAIANLCG 254 (408)
Q Consensus 227 ~~Lv~lL~~~~~~~v~~~a~~aL~nL~~ 254 (408)
+.|+..+ .++++.++..|+.++.+||.
T Consensus 543 ~~ll~~l-~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 543 LKLFEFM-HETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHHHHHT-TSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence 6667776 45679999999999999994
No 133
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=77.16 E-value=25 Score=29.56 Aligned_cols=84 Identities=23% Similarity=0.194 Sum_probs=60.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhhHHHHHHH
Q 041050 22 EIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLTFEADQMQ 101 (408)
Q Consensus 22 ~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r 101 (408)
.++|.--+-.+.....|..+..++..+..+......+..|+..++-.|..|...+....+.+..|...+..+.-+-.+.|
T Consensus 31 rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k 110 (168)
T 3o0z_A 31 RLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLK 110 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443333344446666667777777766777777889999999999999998888888888888888777776655555
Q ss_pred hhhh
Q 041050 102 KCLE 105 (408)
Q Consensus 102 ~~~~ 105 (408)
-...
T Consensus 111 ~~~~ 114 (168)
T 3o0z_A 111 HNLE 114 (168)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 134
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=75.76 E-value=13 Score=24.88 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhh
Q 041050 36 TAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQL 90 (408)
Q Consensus 36 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 90 (408)
.+-+-+-.++.++. .++.|..+++|-++.|.+-|..||+.+..+.++.
T Consensus 7 SlVDtVYaLkDqV~-------eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~~ 54 (56)
T 2w6b_A 7 SLVDTVYALKDEVQ-------ELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNM 54 (56)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445556666655 3445677889999999999999999998876543
No 135
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=75.63 E-value=31 Score=32.06 Aligned_cols=147 Identities=13% Similarity=0.075 Sum_probs=95.8
Q ss_pred HHHHHhhcCC------CHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHH-cCCCCHHHHHHHHHHHHHhccCChh
Q 041050 143 HKILSLLESE------DANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLL-RSFEDETIRRVAAGAIANLAMNAEA 215 (408)
Q Consensus 143 ~~Ll~lL~s~------~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL-~~~~~~~v~~~A~~aL~nLa~~~~~ 215 (408)
..+..+++++ +.+.-..|+..|.-+|.+-..-.+|.+.. .+.|-+++ ....++.++..|+.+|+..-+++|.
T Consensus 25 ~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~ 103 (315)
T 3qml_C 25 KEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPP 103 (315)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHH
Confidence 3344555554 34456778888888888777777787632 44454444 2235788999999999998888898
Q ss_pred hHHHHHhcC--cHHHHHHHhhc---C---CCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCC--CHHHHHH
Q 041050 216 NQELIMAQG--GISLLSTTAAD---A---EDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCG--HPDVLSQ 285 (408)
Q Consensus 216 ~~~~i~~~g--~i~~Lv~lL~~---~---~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~--~~~v~~~ 285 (408)
..+.|...- -+..++.-|.. . ....+....+++|--|..++.- + ...++..|.+++..+ ++.++..
T Consensus 104 Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F-~~~~m~~L~~ly~~~~~d~~~k~K 179 (315)
T 3qml_C 104 VVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---L-PIYSTVVLQNVYERNNKDKQLQIK 179 (315)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C---CCHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---h-hhccHHHHHHHHccCCCCHHHHHH
Confidence 888776642 12222222211 1 2336677788888888866521 1 144667787777666 8999998
Q ss_pred HHHHHHHhh
Q 041050 286 VARGIANFA 294 (408)
Q Consensus 286 a~~aL~nL~ 294 (408)
|+..+..+-
T Consensus 180 vl~li~d~f 188 (315)
T 3qml_C 180 VLELISKIL 188 (315)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 887777764
No 136
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=74.55 E-value=13 Score=30.40 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=14.1
Q ss_pred chhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhh
Q 041050 57 CRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLL 91 (408)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 91 (408)
.++.|+.+++-+++...+.-..+.+++..|..+..
T Consensus 93 ~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 93 DLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444433333344444444444433
No 137
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=74.05 E-value=11 Score=34.08 Aligned_cols=102 Identities=16% Similarity=0.159 Sum_probs=64.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCch-hHHHHHhcccHHHHHHhhc--------CCCHHHHHHHHHHHHHhhccchhhhhHHHh
Q 041050 236 AEDPQTLRMVAGAIANLCGNDK-LQMKLRSEGGIRALLGMVR--------CGHPDVLSQVARGIANFAKCESRAATQVRF 306 (408)
Q Consensus 236 ~~~~~v~~~a~~aL~nL~~~~~-~~~~i~~~g~l~~L~~lL~--------~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~ 306 (408)
+..|..+..++++++|+-.++. .++.+.+......++..+. .++..++-.++..+.|++..-.+
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~------- 173 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTK------- 173 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhh-------
Confidence 4567899999999999998888 6777765433344444331 12456777888899999851000
Q ss_pred hhhhccCChhhHHHHHhcCcHHHHHHhccC---------CCHHHHHHHHHHHHHHccCch
Q 041050 307 IRCTATGVKSGRSLLIEDGALPWIVQNANN---------EAAPIRRHIELALCHLAQHEV 357 (408)
Q Consensus 307 ~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~---------~~~~v~~~a~~aL~~La~~~~ 357 (408)
... +......++..+.. .+.+....+..|++++...+.
T Consensus 174 -------~~~------~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 174 -------GNS------DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp -------SCS------CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred -------ccc------hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 000 11233344444431 377888899999999986443
No 138
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=73.76 E-value=73 Score=34.61 Aligned_cols=216 Identities=10% Similarity=0.050 Sum_probs=115.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCC--CHHHHHHHHHHHHHhcc-CChh----hHHHHHhc
Q 041050 151 SEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFE--DETIRRVAAGAIANLAM-NAEA----NQELIMAQ 223 (408)
Q Consensus 151 s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~--~~~v~~~A~~aL~nLa~-~~~~----~~~~i~~~ 223 (408)
+.+++.|..|-..|..+-..++ +......+|..+. ++.+|-.|+.+|.+... -+++ .+..+. .
T Consensus 19 ~sd~~~r~~A~~~L~~~q~sp~---------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr-~ 88 (980)
T 3ibv_A 19 SVGPIIKQQATDFIGSLRSSST---------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIR-D 88 (980)
T ss_dssp TSCHHHHHHHHHHHHHHHHSTT---------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHH-H
T ss_pred CCCHHHHHHHHHHHHHHHcChh---------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHH-H
Confidence 3478999999999988755443 4555566675433 78899999988876543 1122 233222 2
Q ss_pred CcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCC---chhHHHHHhcccHHHHHHhhcCCCH-HHHHHHHHHHHHhhcc--c
Q 041050 224 GGISLLSTTAADAEDPQTLRMVAGAIANLCGN---DKLQMKLRSEGGIRALLGMVRCGHP-DVLSQVARGIANFAKC--E 297 (408)
Q Consensus 224 g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~---~~~~~~i~~~g~l~~L~~lL~~~~~-~v~~~a~~aL~nL~~~--~ 297 (408)
..+..+...-.....+-++...+.+++.++.. ..+ .+.++-|+.++..+++ ......+++|..+... +
T Consensus 89 ~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~W------p~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~ 162 (980)
T 3ibv_A 89 SVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNW------NDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIAD 162 (980)
T ss_dssp HHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTC------TTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccC------chHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHh
Confidence 22333322100123456888999999888721 122 1344556666654443 3334455555544320 0
Q ss_pred hhh-hhHHHhhhhhccCChhhHHHHHhc-------CcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHH
Q 041050 298 SRA-ATQVRFIRCTATGVKSGRSLLIED-------GALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALW 369 (408)
Q Consensus 298 ~~~-~~~~~~~i~~~~~~~~~~~~i~~~-------g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~ 369 (408)
... +.... ...+...++.+.+. +++..|..+..+.++.++..+..++.......+. ..++....++
T Consensus 163 ~~~~~~~~~-----~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~-~~i~~~~ll~ 236 (980)
T 3ibv_A 163 SLVLKTDVQ-----IQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI-NLIVNEPCMN 236 (980)
T ss_dssp CCSCCCHHH-----HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH-HHHHCHHHHH
T ss_pred cccccCHHH-----HhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH-HhhhcchHHH
Confidence 000 00000 00111123333321 3333444444446888888899999988876432 3455566677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 041050 370 ELVRISRDCSREDIRSLAHRTL 391 (408)
Q Consensus 370 ~L~~ll~~~~~~~~~~~A~~~L 391 (408)
.+.+++.+ ++++.+|..+|
T Consensus 237 ~l~~~L~~---~~~r~~A~ecL 255 (980)
T 3ibv_A 237 LLYSFLQI---EELRCAACETM 255 (980)
T ss_dssp HHHHHTTS---HHHHHHHHHHH
T ss_pred HHHHHcCC---hHHHHHHHHHH
Confidence 77777664 45666666443
No 139
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=71.92 E-value=1.3 Score=29.18 Aligned_cols=45 Identities=16% Similarity=0.165 Sum_probs=35.8
Q ss_pred cCCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 041050 8 TGFEPGASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYT 52 (408)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~ 52 (408)
+-..++..-.+|.+.|++-++|...+-.++|.|...+|..+.+++
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 333455566788999999999999999999999998888876554
No 140
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=70.63 E-value=57 Score=35.78 Aligned_cols=125 Identities=10% Similarity=0.043 Sum_probs=82.4
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcC------CCCHHHHHHHHHHHHHhccCChhhHH
Q 041050 145 ILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRS------FEDETIRRVAAGAIANLAMNAEANQE 218 (408)
Q Consensus 145 Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~------~~~~~v~~~A~~aL~nLa~~~~~~~~ 218 (408)
+.+.+...+.+-+..++++|+|+.. ...++.|..++.. +.+..++..|+++|.+++...|...
T Consensus 445 l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v- 513 (1056)
T 1lsh_A 445 LSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV- 513 (1056)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH-
T ss_pred HHHHHhcCChHHHHHHHHHhhccCC----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH-
Confidence 3345566778888999999999876 2346777777642 2356788889999999987633221
Q ss_pred HHHhcCcHHHHHHHhh-cCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhc-CCCHHHHHHHHHHHHHhhcc
Q 041050 219 LIMAQGGISLLSTTAA-DAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVR-CGHPDVLSQVARGIANFAKC 296 (408)
Q Consensus 219 ~i~~~g~i~~Lv~lL~-~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~-~~~~~v~~~a~~aL~nL~~~ 296 (408)
-+.|+.+.. ...++++|..|+..|.. .+|.. ..+..|...+. .++..|...+...|.+++..
T Consensus 514 -------~~il~~i~~n~~e~~EvRiaA~~~Lm~--t~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 514 -------QEIVLPIFLNVAIKSELRIRSCIVFFE--SKPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp -------HHHHHHHHHCTTSCHHHHHHHHHHHHH--TCCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred -------HHHHHHHhcCCCCChHHHHHHHHHHHH--HCcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 233455543 56778898877777643 23322 22344566564 47788888888999999863
No 141
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=67.01 E-value=7 Score=29.80 Aligned_cols=53 Identities=32% Similarity=0.426 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 041050 35 KTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLT 94 (408)
Q Consensus 35 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 94 (408)
+.+.+++..+..++. ....|+.+++..|..+...|..+|.+...+..-+.+++
T Consensus 8 e~lre~l~~le~~~~-------~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 8 NQLKEDYNTLKRELS-------DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544 46677888888888888888877777777777766665
No 142
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=66.99 E-value=33 Score=24.95 Aligned_cols=54 Identities=15% Similarity=0.136 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhh
Q 041050 36 TAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQ 89 (408)
Q Consensus 36 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (408)
.+.+.+......+.+.......+..|+..++|+++.....-+..++.+......
T Consensus 17 ~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~k 70 (81)
T 1ic2_A 17 NALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333445666666666665554444444444433333
No 143
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=65.62 E-value=39 Score=25.12 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=38.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhh
Q 041050 17 AEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLL 91 (408)
Q Consensus 17 ~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 91 (408)
.+++..++..++.+-+.++.+++....+-..-.++... +.+...+...+...+..++..+..+...+.
T Consensus 20 eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q-------l~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 20 LKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS-------MKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555666666666666555555444433322222 555566666666777777777777665543
No 144
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=64.52 E-value=36 Score=28.21 Aligned_cols=67 Identities=25% Similarity=0.311 Sum_probs=29.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhh
Q 041050 19 DIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLL 91 (408)
Q Consensus 19 ~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 91 (408)
+...|+.-+..|..++...|.+...+.+-++++..+ =|.+..++.-+....+..+++-...|..++.
T Consensus 59 e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTas------LFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~ 125 (154)
T 2ocy_A 59 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS------LFDEANNMVADARKEKYAIEILNKRLTEQLR 125 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445544544444444444444433321 1233333443444444445544444444443
No 145
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=64.17 E-value=19 Score=32.49 Aligned_cols=99 Identities=12% Similarity=0.050 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHHHHhccCChh-hHHHHHhcCcHHHHHHHhhcC-------CCHHHHHHHHHHHHHHhC-CchhHHHHH
Q 041050 193 FEDETIRRVAAGAIANLAMNAEA-NQELIMAQGGISLLSTTAADA-------EDPQTLRMVAGAIANLCG-NDKLQMKLR 263 (408)
Q Consensus 193 ~~~~~v~~~A~~aL~nLa~~~~~-~~~~i~~~g~i~~Lv~lL~~~-------~~~~v~~~a~~aL~nL~~-~~~~~~~i~ 263 (408)
+.++..+-.++.+++|+..+ +. .+..+........++..+... .+..++..++..+.|++. .-..+.
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~-~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~--- 176 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNN-ENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 176 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTC-TTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---
T ss_pred CCchhHHHHHHHHHHHcccC-CchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---
Confidence 34778899999999999999 77 676665443233444433111 245688888999999982 111000
Q ss_pred hcccHHHHHHhhc---------CCCHHHHHHHHHHHHHhhc
Q 041050 264 SEGGIRALLGMVR---------CGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 264 ~~g~l~~L~~lL~---------~~~~~v~~~a~~aL~nL~~ 295 (408)
+......++..+. ..|++....++-|+++|..
T Consensus 177 ~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 177 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 1122333444443 2478888889999999985
No 146
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=63.89 E-value=5.7 Score=29.68 Aligned_cols=31 Identities=29% Similarity=0.492 Sum_probs=23.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q 041050 20 IAEIRKLLQNEIHMRKTAEEELNKLKSRLGQ 50 (408)
Q Consensus 20 ~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~ 50 (408)
+-..+...|+|+..|...|.++..+|+-+.+
T Consensus 30 ~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~ 60 (86)
T 3swk_A 30 IMRLREKLQEEMLQREEAENTLQSFRQDVDN 60 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3456777788888888888888888877663
No 147
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=63.89 E-value=16 Score=30.05 Aligned_cols=77 Identities=16% Similarity=0.155 Sum_probs=58.5
Q ss_pred CChhhHHHHHhcCcHHHHHHhccC------CCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCHH-HHHH
Q 041050 313 GVKSGRSLLIEDGALPWIVQNANN------EAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSRE-DIRS 385 (408)
Q Consensus 313 ~~~~~~~~i~~~g~l~~Lv~lL~~------~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~~-~~~~ 385 (408)
...+.+..+++.|++..+-.-|.+ ++..+|+....+|.+|- -....+.++|.-..++.+-+++.+. ..+.
T Consensus 49 ~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP---I~~e~Lk~SglGkvv~~l~k~~~et~~nk~ 125 (145)
T 2xpp_A 49 MSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK---IHKEHLVTSGVGKIVYFYSINPKESKEVRA 125 (145)
T ss_dssp TCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC---CCHHHHHHHCHHHHHHHHHHCTTSCHHHHH
T ss_pred hhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC---CCHHHhhcCCCCcchhhhhcCCccCHHHHH
Confidence 567778889999999877776653 37889999999999884 3467788899888888887765443 4777
Q ss_pred HHHHHHh
Q 041050 386 LAHRTLS 392 (408)
Q Consensus 386 ~A~~~L~ 392 (408)
.|.+++.
T Consensus 126 la~~Li~ 132 (145)
T 2xpp_A 126 SAKALVQ 132 (145)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776653
No 148
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=63.86 E-value=54 Score=26.13 Aligned_cols=78 Identities=14% Similarity=0.193 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 041050 17 AEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLT 94 (408)
Q Consensus 17 ~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 94 (408)
.+++..++..++.+-+.++.++++...+-....+++...++-..-......++..+...+..++..+..+.+.+.+..
T Consensus 19 ~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeee 96 (129)
T 2fxo_A 19 KEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEE 96 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777766666555554444333333333444556666777777788888888888888876653
No 149
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=63.48 E-value=1.1e+02 Score=29.42 Aligned_cols=115 Identities=13% Similarity=0.073 Sum_probs=76.9
Q ss_pred CcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhh
Q 041050 224 GGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAAT 302 (408)
Q Consensus 224 g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~ 302 (408)
..++.++.+- ...+.++++.++.+|.-.| .+.+.. ...++.|..++..+++.|.+.+..+.+++-.
T Consensus 63 ~fl~~il~f~-~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tslYp------- 129 (386)
T 3o2t_A 63 NFLDEIIAFQ-ADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDENVNVVKKAILTMTQLYK------- 129 (386)
T ss_dssp GGHHHHHGGG-GCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHhc-cCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-------
Confidence 4577788775 5667899999999999888 333332 2345667788888999999999988888753
Q ss_pred HHHhhhhhccCCh----hhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHc
Q 041050 303 QVRFIRCTATGVK----SGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLA 353 (408)
Q Consensus 303 ~~~~~i~~~~~~~----~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La 353 (408)
.+..-+|+-.+.. .....+.. +-..++....+++..++.+|...+-.+.
T Consensus 130 l~f~~i~~~~~~~~~~e~~W~~m~~--lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 130 VALQWMVKSRVISELQEACWDMVSA--MAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHHHHHC-CCCHHHHHHHHHHHH--HHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHH--HHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 0111134433322 33334432 4446666778889999999998776644
No 150
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=63.02 E-value=7.8 Score=37.72 Aligned_cols=60 Identities=22% Similarity=0.299 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 041050 35 KTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLT 94 (408)
Q Consensus 35 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 94 (408)
..+++|+..++++..+++.+.+.++.++.+++.+|..+...|..+-.++..++.+....+
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~v 65 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYL 65 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 556777777777777777777788888899999999999999999999999998887775
No 151
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=60.92 E-value=62 Score=35.57 Aligned_cols=109 Identities=9% Similarity=0.005 Sum_probs=62.3
Q ss_pred HHHHHHHcCC-CCHHHHHHHHHHHHHhccCChhhH--HHHHhcCcHHHHHHHhhcCCC----HHHHHHHHHHHHHHhCCc
Q 041050 184 SSLLMLLRSF-EDETIRRVAAGAIANLAMNAEANQ--ELIMAQGGISLLSTTAADAED----PQTLRMVAGAIANLCGND 256 (408)
Q Consensus 184 ~~L~~lL~~~-~~~~v~~~A~~aL~nLa~~~~~~~--~~i~~~g~i~~Lv~lL~~~~~----~~v~~~a~~aL~nL~~~~ 256 (408)
+.|-..+..+ .+-...+.++|+++.++..-.... ..+. ..++.|+.+...... +.+...++++++..+.--
T Consensus 480 ~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp--~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl 557 (1073)
T 3gjx_A 480 KKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV--TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFL 557 (1073)
T ss_dssp HHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH--HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHH
Confidence 3344444432 357889999999999976422222 2222 246667766533221 123333446666554110
Q ss_pred hhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 257 KLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 257 ~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
.....+. ...+..|+..+..+++.|+..||.|+..++.
T Consensus 558 ~~h~~~L-~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 558 RAHWKFL-KTVVNKLFEFMHETHDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HHCHHHH-HHHHHHHHHHTTCCSTTHHHHHHHHHHHHHH
T ss_pred HhCHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 1111121 1345556677778899999999999999985
No 152
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=60.66 E-value=29 Score=28.24 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHH
Q 041050 38 EEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDET 73 (408)
Q Consensus 38 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (408)
++|+..+|..+...+...+...+|+.++++++..+.
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443333333333344444444443333
No 153
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=60.41 E-value=9.1 Score=37.36 Aligned_cols=62 Identities=16% Similarity=0.305 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 041050 33 MRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLT 94 (408)
Q Consensus 33 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 94 (408)
.+..+++|+..++++..++..+.+....|+..+..+|..+...|..+-..+..++.+....+
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV~v 65 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVFC 65 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 35778888888888888888888888888889999999999999999999999998877765
No 154
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=56.43 E-value=1.6e+02 Score=31.91 Aligned_cols=147 Identities=10% Similarity=0.017 Sum_probs=85.5
Q ss_pred CCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh---CCchhHHHHHhcccHHH
Q 041050 194 EDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC---GNDKLQMKLRSEGGIRA 270 (408)
Q Consensus 194 ~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~---~~~~~~~~i~~~g~l~~ 270 (408)
.++.++..++.+|.....+ - ....++..+.++.+..+|. ++.++..|+.+|..+. .+++.+..++..=.+..
T Consensus 205 ~~~~l~~~~L~~l~s~i~w-i-~~~~i~~~~ll~~l~~~L~---~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~ 279 (980)
T 3ibv_A 205 KNYGTVGLCLQVYAQWVSW-I-NINLIVNEPCMNLLYSFLQ---IEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL 279 (980)
T ss_dssp TCHHHHHHHHHHHHHHTTT-S-CHHHHHCHHHHHHHHHHTT---SHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhh-c-CHHhhhcchHHHHHHHHcC---ChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence 5778888899999888776 2 2456666777788888873 4899999999999997 44555555544312222
Q ss_pred HHHhhc--CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhcc--CChhhHHHHH--hcCcHHHHHHhccCCCHHHHHH
Q 041050 271 LLGMVR--CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTAT--GVKSGRSLLI--EDGALPWIVQNANNEAAPIRRH 344 (408)
Q Consensus 271 L~~lL~--~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~--~~~~~~~~i~--~~g~l~~Lv~lL~~~~~~v~~~ 344 (408)
++..+. .+|.+..+..++.+..++..-... .... .+++.+.... =.+.++.+..++.+++.++...
T Consensus 280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~--------~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~ 351 (980)
T 3ibv_A 280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAI--------KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTA 351 (980)
T ss_dssp HHCC-----CCHHHHHHHHHHHHHHHHHHHHH--------HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHT
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHH--------ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHH
Confidence 333332 578888777777776664300000 0000 0111111111 1257777777777777777666
Q ss_pred HHHHHHHHc
Q 041050 345 IELALCHLA 353 (408)
Q Consensus 345 a~~aL~~La 353 (408)
+.-.+..+.
T Consensus 352 t~~Fw~~~l 360 (980)
T 3ibv_A 352 VFPFLSDLL 360 (980)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544433
No 155
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=56.35 E-value=32 Score=34.79 Aligned_cols=32 Identities=6% Similarity=0.138 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 041050 17 AEDIAEIRKLLQNEIHMRKTAEEELNKLKSRL 48 (408)
Q Consensus 17 ~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~ 48 (408)
..++..+..............++++...+..+
T Consensus 462 ~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~ 493 (597)
T 3oja_B 462 RAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRY 493 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 45666666555555555555555555444443
No 156
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=55.33 E-value=1.2e+02 Score=27.30 Aligned_cols=136 Identities=13% Similarity=0.098 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhccCC-hhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhh
Q 041050 198 IRRVAAGAIANLAMNA-EANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMV 275 (408)
Q Consensus 198 v~~~A~~aL~nLa~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL 275 (408)
.+...+.-+..|..++ +..-.. .++.++.+. .+.+.++++..+..|.-.| ..++... ..++.|..++
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll~~-----~l~~il~~~-~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll 99 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELAEE-----FLESVLSLA-HDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLL 99 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHH-----HHHHHHGGG-GCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCHhHHHH-----HHHHHHHhc-cCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 4444444455544431 333333 355566654 4578899999999999888 3332222 3456677888
Q ss_pred cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCCh----hhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHH
Q 041050 276 RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVK----SGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCH 351 (408)
Q Consensus 276 ~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~----~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~ 351 (408)
+.+++.|.+.+..+.+++-. .+..-+|.-.+.+ .....+. ..-..++....+++..+|.++...+-.
T Consensus 100 ~d~d~~V~K~~I~~~~~iY~-------~~l~~i~~~~~~~~~~~~~W~~m~--~lK~~Il~~~~s~n~gvkl~~iKF~e~ 170 (257)
T 3gs3_A 100 RDNSAQVIKRVIQACGSIYK-------NGLQYLCSLMEPGDSAEQAWNILS--LIKAQILDMIDNENDGIRTNAIKFLEG 170 (257)
T ss_dssp TCSCHHHHHHHHHHHHHHHH-------HHHHHHTTSSSCCHHHHHHHHHHH--HHHHHHHHGGGSSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHH-------HHHHHHhcCCCCcchHHHHHHHHH--HHHHHHHHHHccCCcchHHHHHHHHHH
Confidence 88899999999988888764 1111133322222 2333333 244566777888899999999988776
Q ss_pred Hc
Q 041050 352 LA 353 (408)
Q Consensus 352 La 353 (408)
+.
T Consensus 171 vI 172 (257)
T 3gs3_A 171 VV 172 (257)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 157
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=55.02 E-value=31 Score=29.17 Aligned_cols=77 Identities=13% Similarity=0.151 Sum_probs=57.7
Q ss_pred CChhhHHHHHhcCcHHHHHHhccC------CCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCHH-HHHH
Q 041050 313 GVKSGRSLLIEDGALPWIVQNANN------EAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSRE-DIRS 385 (408)
Q Consensus 313 ~~~~~~~~i~~~g~l~~Lv~lL~~------~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~~-~~~~ 385 (408)
...+.+..+++.|++..+..-|.+ ++..+|.....+|.+|- -....+.++|.-..++-+-.+..+. ..+.
T Consensus 64 ~k~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lP---I~~e~Lk~SglGkvV~~l~k~~~et~~nkr 140 (170)
T 3nfq_A 64 SKANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLP---VKTEHLKESGLGRVVIFYTKSKRVEAQLAR 140 (170)
T ss_dssp TCGGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC---CCHHHHHHHSHHHHHHHHHHCTTSCHHHHH
T ss_pred hHHHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCC---CCHHHHhhCCCCceeeehhcCCcccHHHHH
Confidence 457788889999998877766643 37889999999999885 3456788999888888777765433 4667
Q ss_pred HHHHHHh
Q 041050 386 LAHRTLS 392 (408)
Q Consensus 386 ~A~~~L~ 392 (408)
.|.+++.
T Consensus 141 la~~Li~ 147 (170)
T 3nfq_A 141 LAEKLIA 147 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 158
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=54.23 E-value=83 Score=31.16 Aligned_cols=111 Identities=12% Similarity=0.187 Sum_probs=80.0
Q ss_pred HHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCC-CCHH-HHHHHHHHHHHhc
Q 041050 133 ITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSF-EDET-IRRVAAGAIANLA 210 (408)
Q Consensus 133 ~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~-~~~~-v~~~A~~aL~nLa 210 (408)
..++.+-=.++-++..|.++++.+...|+.++. .+..+.-+...+.+..|+.++-.. .+.. +....=.++..|+
T Consensus 109 Fd~VLevysve~i~~aL~S~~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Ls 184 (500)
T 3vld_A 109 FDDVLEVYSAEDLVKALRSEIDPLKVAACRVIE----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLS 184 (500)
T ss_dssp HHHHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHhcCChHHHHHHHHHhc----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcC
Confidence 356777777899999999999999999999998 344455566666789999998643 2334 7777778888998
Q ss_pred cCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHH
Q 041050 211 MNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIA 250 (408)
Q Consensus 211 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~ 250 (408)
.+ +-.|..|.+. ..|.|... ++..++.+...-...+.
T Consensus 185 sd-eLirrril~n-nl~lL~~v-K~~~~~i~~sRLLdll~ 221 (500)
T 3vld_A 185 TD-ELIRRRLFDN-NLPYLVSV-KGRMETVSFVRLIDFLT 221 (500)
T ss_dssp TS-HHHHHHHHTT-THHHHHHH-HHHCCHHHHHHHHHHHH
T ss_pred ch-HHHHHHHHHH-hHHHHHHH-hcCCCceeHHHHHHHHH
Confidence 88 7788888865 56776666 55566655544444443
No 159
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=53.66 E-value=36 Score=24.80 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=35.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHH
Q 041050 20 IAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLED 71 (408)
Q Consensus 20 ~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (408)
...+...++..-.+....++++..+++.+..+..+.+...+.+...+.+|+.
T Consensus 22 ~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 22 AEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777788888888888888776665555555555555555554
No 160
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=53.62 E-value=82 Score=34.34 Aligned_cols=102 Identities=12% Similarity=0.094 Sum_probs=56.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcC---CCCHHHHHHHHHHHHHhccCChhhH
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRS---FEDETIRRVAAGAIANLAMNAEANQ 217 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~---~~~~~v~~~A~~aL~nLa~~~~~~~ 217 (408)
+..|+.+--|.-.++|..|-.+|.+... -+..+..+ +|.++..|.. +.+.+-.+ ++|+-|... .-.+
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iK---GaLy~L~~k-~~~~ 205 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQ---VILNVLLIK-KIHR 205 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHH---HHHHHTTSH-HHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHH---HHHHHHhhh-hhhh
Confidence 4566676668899999999999998766 45555444 6677777753 22322233 455544432 1111
Q ss_pred HHHHhcCc----HHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 041050 218 ELIMAQGG----ISLLSTTAADAEDPQTLRMVAGAIANLC 253 (408)
Q Consensus 218 ~~i~~~g~----i~~Lv~lL~~~~~~~v~~~a~~aL~nL~ 253 (408)
....+..- ++.|+... ..+.|.+...+-.+...+.
T Consensus 206 ~~~~d~~~~~~~~~ali~~~-~~dKpsI~~l~~~l~~~i~ 244 (997)
T 1vsy_5 206 KLMTDYKDIGRLIFLLIECC-RVNELEIGMYADKILTDIV 244 (997)
T ss_dssp HGGGCHHHHHHHHHHHHHTC-SCSSSSTTTHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHhC-cCCCHHHHHHHHHHHHHHH
Confidence 11111122 34444442 4456677666655544443
No 161
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=52.98 E-value=89 Score=25.58 Aligned_cols=69 Identities=7% Similarity=0.047 Sum_probs=52.0
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCchhHHHHHhcccHHHHHHhhcC------CCHHHHHHHHHHHHHhhc
Q 041050 226 ISLLSTTAADAEDPQTLRMVAGAIANLC--GNDKLQMKLRSEGGIRALLGMVRC------GHPDVLSQVARGIANFAK 295 (408)
Q Consensus 226 i~~Lv~lL~~~~~~~v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~L~~lL~~------~~~~v~~~a~~aL~nL~~ 295 (408)
+..|..-+ .+.+|.+...|+..|-.+. +.+..+..+.+...+.-|+.++.. .++.|+..++..+..-+.
T Consensus 50 ~ral~krl-~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 50 TRLLAHKI-QSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHH-TCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 44555555 4678888888888887777 445667778788888889988853 578899999988888764
No 162
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=52.29 E-value=23 Score=28.77 Aligned_cols=71 Identities=10% Similarity=0.102 Sum_probs=45.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhc-cchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHH
Q 041050 267 GIRALLGMVRCGHPDVLSQVARGIANFAK-CESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHI 345 (408)
Q Consensus 267 ~l~~L~~lL~~~~~~v~~~a~~aL~nL~~-~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a 345 (408)
++++|.+.+.++++.++..|+..|-.+.. |+.. ....+.....+..|+.+++..++.|+..+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~-----------------f~~evas~~Fl~el~~l~~~~~~~Vk~ki 105 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI-----------------FHLEVCSRDFASEVSNVLNKGHPKVCEKL 105 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-----------------HHHHHSSHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH-----------------HHHHHhhHHHHHHHHHHhccCCHHHHHHH
Confidence 45668888888999988888777766665 3322 22223333444555555555677888888
Q ss_pred HHHHHHHcc
Q 041050 346 ELALCHLAQ 354 (408)
Q Consensus 346 ~~aL~~La~ 354 (408)
...+...+.
T Consensus 106 l~li~~W~~ 114 (140)
T 3ldz_A 106 KALMVEWTD 114 (140)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766553
No 163
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=51.76 E-value=38 Score=27.80 Aligned_cols=72 Identities=6% Similarity=-0.096 Sum_probs=52.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC------CCHH
Q 041050 267 GIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN------EAAP 340 (408)
Q Consensus 267 ~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~------~~~~ 340 (408)
++.+|...+.++++.++..|+..|-.+..+ ..+.....+.....+..|+.++.. .+..
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkN----------------CG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~ 102 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNH----------------CGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGK 102 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHH----------------SCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH----------------cCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHH
Confidence 466788888899999999888888777751 223444555566777888888864 3778
Q ss_pred HHHHHHHHHHHHcc
Q 041050 341 IRRHIELALCHLAQ 354 (408)
Q Consensus 341 v~~~a~~aL~~La~ 354 (408)
|+..+...+...+.
T Consensus 103 Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 103 VKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99888888876664
No 164
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=51.62 E-value=16 Score=32.33 Aligned_cols=83 Identities=11% Similarity=0.060 Sum_probs=57.2
Q ss_pred cHHHHHHhccCCCHHHHHHHHHHHHHHccC--chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHH-----HH--HhccHh
Q 041050 326 ALPWIVQNANNEAAPIRRHIELALCHLAQH--EVNAREMISGGALWELVRISRDCSREDIRSLAH-----RT--LSSSLT 396 (408)
Q Consensus 326 ~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~-----~~--L~~~~~ 396 (408)
++..|.+.+.+.++.++..|...|-.+..+ ..-...+.+...+..|+.++....+..++..+. |. +...|.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~ 125 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEPK 125 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTCGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 566788888899999999999999999887 334455567777788888887655444333333 33 333333
Q ss_pred ------hHHHHHhhhhcC
Q 041050 397 ------FRAEMRRLRIEF 408 (408)
Q Consensus 397 ------~~~~~~~~~~~~ 408 (408)
....|++-|++|
T Consensus 126 l~~i~~~Y~~Lk~~G~~F 143 (226)
T 3zyq_A 126 YKVVQDTYQIMKVEGHVF 143 (226)
T ss_dssp GHHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHhcCCCc
Confidence 457888888765
No 165
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=51.14 E-value=30 Score=28.95 Aligned_cols=69 Identities=7% Similarity=0.129 Sum_probs=52.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLA 210 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa 210 (408)
+..|..-|++.++.++..|+.+|-.+.. ++.....|.....+..|+.++....++.|+..++..|..-+
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 4556677788999999999999988876 45666666666667888888875467888888877775444
No 166
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=49.98 E-value=34 Score=28.58 Aligned_cols=72 Identities=10% Similarity=0.012 Sum_probs=48.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC-CCHHHHHHH
Q 041050 267 GIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN-EAAPIRRHI 345 (408)
Q Consensus 267 ~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v~~~a 345 (408)
++.+|.+.+.++++.++..|+..|-.+..+ ........+.....+..|+.++.. .++.|+..+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkN----------------cG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~ki 116 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVAN----------------CGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKL 116 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHH----------------TCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH----------------hhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHH
Confidence 456688888889999988888777777651 123333344445566666666654 577888888
Q ss_pred HHHHHHHcc
Q 041050 346 ELALCHLAQ 354 (408)
Q Consensus 346 ~~aL~~La~ 354 (408)
...+...+.
T Consensus 117 l~li~~W~~ 125 (163)
T 1x5b_A 117 KSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877766553
No 167
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=49.60 E-value=22 Score=31.41 Aligned_cols=70 Identities=14% Similarity=0.220 Sum_probs=53.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAM 211 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 211 (408)
+..|..-|++.++.++..|+.+|-.+.. ++.....|.....+..|..+++...++.|+..++..|...+.
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 5566777889999999999999988877 555666666666677788888766678898888887765543
No 168
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=48.63 E-value=1e+02 Score=24.51 Aligned_cols=73 Identities=22% Similarity=0.194 Sum_probs=36.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhh
Q 041050 21 AEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQL 93 (408)
Q Consensus 21 ~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 93 (408)
..|...|+.|.......++....+..+-.++......+...+.........+...+..++.++..|+.++.+.
T Consensus 51 ~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 51 NDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455444444443333333333333344444444455566677777777777776544
No 169
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=48.60 E-value=1.2e+02 Score=29.58 Aligned_cols=138 Identities=13% Similarity=0.136 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchh-HHHHHhcccHHHHHHhhc-
Q 041050 199 RRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKL-QMKLRSEGGIRALLGMVR- 276 (408)
Q Consensus 199 ~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~-~~~i~~~g~l~~L~~lL~- 276 (408)
+-.++..++-+..+ +..-. -+..++........+..+..++++++|+-.++.. +..+........++..+.
T Consensus 243 ~FPaLDLLRl~v~~-p~~~~------~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKK-LPYSS------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGG-CSCGG------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcC-CchHH------HHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 33366666666655 33211 2222332222345688999999999999988884 444433333445555442
Q ss_pred -------CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhcc---------CCCHH
Q 041050 277 -------CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNAN---------NEAAP 340 (408)
Q Consensus 277 -------~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~---------~~~~~ 340 (408)
..+..++..++..+.|++..-.+.+ . +...++.+...+. ..+.+
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~-----------~---------~~el~~~l~e~l~~~~g~~E~~~~d~E 375 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGN-----------S---------DLELLPIVADAINTKYGPLEEYQECEE 375 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC-----------S---------CTTHHHHHHHHHHHTTTTSHHHHTSHH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhccc-----------c---------hHHHHHHHHHHHHhhccccccccCCHH
Confidence 1245577778888889885100000 0 0123445555554 24888
Q ss_pred HHHHHHHHHHHHccCchhHHHHH
Q 041050 341 IRRHIELALCHLAQHEVNAREMI 363 (408)
Q Consensus 341 v~~~a~~aL~~La~~~~~~~~l~ 363 (408)
....++.||++|.......+...
T Consensus 376 A~yRlLVALGtLv~~~~~~~~~a 398 (425)
T 3pst_A 376 AAYRLTVAYGNLATVEPTLRQFA 398 (425)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHh
Confidence 99999999999996444444433
No 170
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=46.02 E-value=81 Score=31.69 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhh
Q 041050 35 KTAEEELNKLKSRLG 49 (408)
Q Consensus 35 ~~~~~e~~~~~~~~~ 49 (408)
...+..+...+..++
T Consensus 473 ~~~~~~l~~~~~~i~ 487 (597)
T 3oja_B 473 IQQEQLLQGLHAEID 487 (597)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 334444444444444
No 171
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=45.92 E-value=58 Score=26.31 Aligned_cols=69 Identities=10% Similarity=0.204 Sum_probs=48.1
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 226 ISLLSTTAADAEDPQTLRMVAGAIANLC--GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 226 i~~Lv~lL~~~~~~~v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
+..|..-| .+.+|.+...|+..|-.+. +.+..+..+.+...+.-|..++...++.|+..+...+...+.
T Consensus 44 ~rai~Krl-~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 44 LRSIMRRV-NHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 34455555 3466777777777776666 334556666666777778888877889999999888887764
No 172
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.90 E-value=27 Score=28.25 Aligned_cols=15 Identities=33% Similarity=0.508 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhh
Q 041050 35 KTAEEELNKLKSRLG 49 (408)
Q Consensus 35 ~~~~~e~~~~~~~~~ 49 (408)
+...++++.+++.+.
T Consensus 28 e~l~~~l~~l~~~l~ 42 (135)
T 2e7s_A 28 NQLKEDYNTLKRELS 42 (135)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444555444443
No 173
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=45.67 E-value=1.2e+02 Score=25.91 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHH
Q 041050 35 KTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDET 73 (408)
Q Consensus 35 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (408)
..+|.+|..+.++..+++...+.+..|+...+.||+...
T Consensus 45 ~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~ 83 (189)
T 2v71_A 45 AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY 83 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666666665443
No 174
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=45.58 E-value=79 Score=30.07 Aligned_cols=131 Identities=13% Similarity=0.131 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchh-HHHHHhcccHHHHHHhhc-
Q 041050 199 RRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKL-QMKLRSEGGIRALLGMVR- 276 (408)
Q Consensus 199 ~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~-~~~i~~~g~l~~L~~lL~- 276 (408)
+-.++..++-+..+ +..- +-+..++........+..+..++++++|+-.++.. +..+........+++.+.
T Consensus 180 ~FP~LDLLRl~v~~-~~~~------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKK-LPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGG-CSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcC-CChH------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 33356666665555 3321 12333332222345688999999999999988884 444433222233444331
Q ss_pred -------CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhcc---------CCCHH
Q 041050 277 -------CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNAN---------NEAAP 340 (408)
Q Consensus 277 -------~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~---------~~~~~ 340 (408)
..+..++-.++..+-|++..-.+.+ . +...++.+...+. ..+.+
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~-----------~---------~~el~~~l~~~l~~~~g~~E~~~~d~E 312 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGN-----------S---------DLELLPIVADAINTKYGPLEEYQECEE 312 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC-----------S---------CTTHHHHHHHHHHHTTTTSHHHHTSHH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhccc-----------c---------hHHHHHHHHHHHHhhccccccccCCHH
Confidence 1245677778888889885100000 0 0123345555554 25888
Q ss_pred HHHHHHHHHHHHccCc
Q 041050 341 IRRHIELALCHLAQHE 356 (408)
Q Consensus 341 v~~~a~~aL~~La~~~ 356 (408)
....++.||++|....
T Consensus 313 A~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 313 AAYRLTVAYGNLATVE 328 (362)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999643
No 175
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=45.45 E-value=51 Score=27.08 Aligned_cols=72 Identities=11% Similarity=-0.035 Sum_probs=50.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC------CCHH
Q 041050 267 GIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN------EAAP 340 (408)
Q Consensus 267 ~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~------~~~~ 340 (408)
++.+|...+.+++|.++..|+..|-.+..+ ........+.....+..|+.++.. .+..
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkN----------------CG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~ 112 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKS----------------CGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEK 112 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHH----------------CCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHh----------------cCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHH
Confidence 456688888899999998888777777651 223333444455567778887753 4788
Q ss_pred HHHHHHHHHHHHcc
Q 041050 341 IRRHIELALCHLAQ 354 (408)
Q Consensus 341 v~~~a~~aL~~La~ 354 (408)
|+..+...+...+.
T Consensus 113 Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 113 VKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99988888877664
No 176
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=45.18 E-value=58 Score=35.82 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=18.1
Q ss_pred chhHhhHHHHHhHHHHHHHHhhhHHHHHHHHh
Q 041050 57 CRDAEMSKLHKTLEDETLQKRKLEEEIVILRS 88 (408)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 88 (408)
++.+|+.++.+.++...+.++.+++....++.
T Consensus 988 ~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~ 1019 (1080)
T 2dfs_A 988 SLQEEIAKLRKELHQTQTEKKTIEEWADKYKH 1019 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666655555555555554443
No 177
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=45.08 E-value=1.1e+02 Score=23.85 Aligned_cols=77 Identities=14% Similarity=0.064 Sum_probs=50.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----hhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhh
Q 041050 18 EDIAEIRKLLQNEIHMRKTAEEELNKLKSR----LGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQL 93 (408)
Q Consensus 18 ~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 93 (408)
|....|+...+.=....+.|.+.....++. ...++.+...+..+...+++++.++.+..+-+|+--...-+++..+
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 444555555554455556666666655543 3335566666677777788888888888888888888877777665
Q ss_pred h
Q 041050 94 T 94 (408)
Q Consensus 94 ~ 94 (408)
.
T Consensus 83 E 83 (111)
T 2v66_B 83 E 83 (111)
T ss_dssp H
T ss_pred H
Confidence 4
No 178
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.03 E-value=39 Score=27.34 Aligned_cols=64 Identities=31% Similarity=0.352 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 041050 31 IHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLT 94 (408)
Q Consensus 31 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 94 (408)
+...+.-..++..++..+..+.........|+.++...|..+...|..+|.+...+..-+.+++
T Consensus 17 l~~~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 17 IASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 80 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555566666666666666677888888888888877777766666666666655554
No 179
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=44.76 E-value=1e+02 Score=23.42 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHH
Q 041050 35 KTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILR 87 (408)
Q Consensus 35 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (408)
+.|.+....+..++............|+..++|+++.....-+.+++.+...+
T Consensus 19 e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~ 71 (101)
T 3u1c_A 19 ENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSE 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444333333335567888888888865444444444443333
No 180
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=42.29 E-value=1.9e+02 Score=25.90 Aligned_cols=129 Identities=12% Similarity=0.086 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHH
Q 041050 154 ANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLST 231 (408)
Q Consensus 154 ~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~ 231 (408)
.+.+...+.-+..+.. ++..-.. .++.++.+-. +.+.++|+..+.+|...+..++..... .++.|..
T Consensus 29 ~~~kl~~L~qa~el~~~~dp~ll~~-----~l~~il~~~~-~~~~~vrk~~~~Fi~e~~~~k~~l~~~-----~l~~L~~ 97 (257)
T 3gs3_A 29 PSTKCELLAKVQETVLGSCAELAEE-----FLESVLSLAH-DSNMEVRKQVVAFVEQVCKVKVELLPH-----VINVVSM 97 (257)
T ss_dssp HHHHHHHHHHHHHHHTTTTGGGHHH-----HHHHHHGGGG-CSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHH
T ss_pred cHHHHHHHHHHHHHHHccCHhHHHH-----HHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 3677777777777665 3333333 3666777654 478999999999999888654443333 4667778
Q ss_pred HhhcCCCHHHHHHHHHHHHHH--------hCCchh---HHHHHh--cccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050 232 TAADAEDPQTLRMVAGAIANL--------CGNDKL---QMKLRS--EGGIRALLGMVRCGHPDVLSQVARGIANFA 294 (408)
Q Consensus 232 lL~~~~~~~v~~~a~~aL~nL--------~~~~~~---~~~i~~--~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~ 294 (408)
++ +++++.+.+.+..+.+++ |.++.. .....+ ...=..++.++.+.+..++-.|...+..+.
T Consensus 98 Ll-~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 98 LL-RDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HT-TCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HH-cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 87 468899988887666554 333321 122211 112234666777888889888887666654
No 181
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=41.82 E-value=55 Score=31.87 Aligned_cols=99 Identities=11% Similarity=0.022 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHHHHHHhccCChhhHHHHHhcC-cHHHHHHHhhcC-------CCHHHHHHHHHHHHHHhC-CchhHHHHH
Q 041050 193 FEDETIRRVAAGAIANLAMNAEANQELIMAQG-GISLLSTTAADA-------EDPQTLRMVAGAIANLCG-NDKLQMKLR 263 (408)
Q Consensus 193 ~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g-~i~~Lv~lL~~~-------~~~~v~~~a~~aL~nL~~-~~~~~~~i~ 263 (408)
..++..+-.++.+++|+-.+ +.....++... ....++..+... .+..++..++..+.|++. .-..+.
T Consensus 273 ~~~~an~MltlR~laNlF~~-~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~--- 348 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNN-ENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 348 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTC-TTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---
T ss_pred CCChhHHHHHHHHHHHhcCC-cchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---
Confidence 35788888999999999999 77444444332 234555544211 235688888899999982 111000
Q ss_pred hcccHHHHHHhhc---------CCCHHHHHHHHHHHHHhhc
Q 041050 264 SEGGIRALLGMVR---------CGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 264 ~~g~l~~L~~lL~---------~~~~~v~~~a~~aL~nL~~ 295 (408)
+...+..+...+. ..|++....++-||++|..
T Consensus 349 ~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 349 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 0122334454444 3588999999999999985
No 182
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=41.65 E-value=48 Score=25.38 Aligned_cols=72 Identities=17% Similarity=0.121 Sum_probs=37.7
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhh
Q 041050 16 AAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQL 90 (408)
Q Consensus 16 ~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 90 (408)
.|+...-.-..|++|.. .+-=+|..||..+++.....+..+.|+.+-.+.++.+...-..+...+..++.++
T Consensus 10 KyrKAMVsnAQLDNEKs---al~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 10 KYKKAMVSNAQLDNEKT---NFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp THHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555666643 3334566666666655555555555555555555554444444555555554444
No 183
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=41.44 E-value=1.4e+02 Score=24.22 Aligned_cols=69 Identities=9% Similarity=0.051 Sum_probs=52.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCchhHHHHHhcccHHHHHHhhcC------CCHHHHHHHHHHHHHhhc
Q 041050 226 ISLLSTTAADAEDPQTLRMVAGAIANLC--GNDKLQMKLRSEGGIRALLGMVRC------GHPDVLSQVARGIANFAK 295 (408)
Q Consensus 226 i~~Lv~lL~~~~~~~v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~L~~lL~~------~~~~v~~~a~~aL~nL~~ 295 (408)
+..|..-+ .+.+|.+...|+..|-.+. +.+..+..+.+...+.-|+.++.. .++.|+..++..+..-+.
T Consensus 40 ~rai~krl-~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 40 PWLLAHKI-QSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 44555555 4678889888888888887 346777888888888889998853 478899988888877764
No 184
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=40.71 E-value=25 Score=21.61 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=23.3
Q ss_pred hHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhh
Q 041050 59 DAEMSKLHKTLEDETLQKRKLEEEIVILRSQL 90 (408)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 90 (408)
..++..++||.+....+.+.+++.+..++..+
T Consensus 3 ~~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 3 SSSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp ---CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888888888888888888887776655
No 185
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=40.24 E-value=21 Score=26.77 Aligned_cols=37 Identities=19% Similarity=0.119 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHH
Q 041050 35 KTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLED 71 (408)
Q Consensus 35 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (408)
..+|.+...++.+++.+..+.+....|...++.+|+.
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666666666666666654
No 186
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=40.19 E-value=43 Score=19.86 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=17.8
Q ss_pred HhHHHHHHHHhhhHHHHHHHHhhhh
Q 041050 67 KTLEDETLQKRKLEEEIVILRSQLL 91 (408)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~~~l~ 91 (408)
.|.+.+...+..++.++..|++.+.
T Consensus 7 dKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 7 XKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 4555666777778888888877664
No 187
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=39.15 E-value=56 Score=27.47 Aligned_cols=73 Identities=8% Similarity=-0.047 Sum_probs=51.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC------CCHH
Q 041050 267 GIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN------EAAP 340 (408)
Q Consensus 267 ~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~------~~~~ 340 (408)
++.+|.+.+.++++.++..|+..|-.+..+ ........+.+...+..|+.++.. .+..
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkN----------------CG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~ 114 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKN----------------CGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEK 114 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHH----------------SHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH----------------cCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHH
Confidence 456788888899999999888888777751 113334445555677778887752 3688
Q ss_pred HHHHHHHHHHHHccC
Q 041050 341 IRRHIELALCHLAQH 355 (408)
Q Consensus 341 v~~~a~~aL~~La~~ 355 (408)
|+..+...+...+..
T Consensus 115 Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 115 VKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988888776643
No 188
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=38.90 E-value=2.7e+02 Score=26.63 Aligned_cols=196 Identities=11% Similarity=0.065 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHH
Q 041050 155 NVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTT 232 (408)
Q Consensus 155 ~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~l 232 (408)
+.+...+.-+..|.. ++. .-.+.++.++.+-. +.+.++|+..+.+|...+....+.... .++.|..+
T Consensus 40 ~~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~-d~~~~vRk~~a~FieEa~~~~~el~~~-----~l~~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQA-DKSIEVRKFVIGFIEEACKRDIELLLK-----LIANLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGG-CSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 345555555555544 232 11346888888877 468999999999999887653444322 46677788
Q ss_pred hhcCCCHHHHHHHHHHHHHHh--------CCchh---HHHHHh--cccHHHHHHhhcCCCHHHHHHHHHHHHHhhcc---
Q 041050 233 AADAEDPQTLRMVAGAIANLC--------GNDKL---QMKLRS--EGGIRALLGMVRCGHPDVLSQVARGIANFAKC--- 296 (408)
Q Consensus 233 L~~~~~~~v~~~a~~aL~nL~--------~~~~~---~~~i~~--~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~--- 296 (408)
| +++++.+.+.++.+.+++- .++.. .....+ ...-..++.++.+.+..++-.|...+..+..+
T Consensus 109 L-~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~ 187 (386)
T 3o2t_A 109 L-RDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSP 187 (386)
T ss_dssp H-TCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSC
T ss_pred H-cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCC
Confidence 7 5688898888777666653 12211 111111 11223466667788888988888666665421
Q ss_pred ---chhh-hhHH-Hhhhhhcc-CChhhH-HHHH--hcCcHHHHHHhccCC--CHHHHHHHHHHHHHHccC-chhHHHH
Q 041050 297 ---ESRA-ATQV-RFIRCTAT-GVKSGR-SLLI--EDGALPWIVQNANNE--AAPIRRHIELALCHLAQH-EVNAREM 362 (408)
Q Consensus 297 ---~~~~-~~~~-~~~i~~~~-~~~~~~-~~i~--~~g~l~~Lv~lL~~~--~~~v~~~a~~aL~~La~~-~~~~~~l 362 (408)
+++. +.+- -..+.... +++-.. ..+. -.+.+..|+..+..+ ++.....+...|+.++.. +.....+
T Consensus 188 ~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rI 265 (386)
T 3o2t_A 188 RMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEV 265 (386)
T ss_dssp CCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHH
T ss_pred CCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHH
Confidence 1110 0000 00011111 111111 1121 235778888888753 344445566777777765 4443333
No 189
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=38.56 E-value=92 Score=22.21 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=20.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 041050 25 KLLQNEIHMRKTAEEELNKLKSRLGQYTESG 55 (408)
Q Consensus 25 ~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~ 55 (408)
..++.=-.++..||+.|..++..+++.+.+-
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q 37 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQ 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566778888888888887655443
No 190
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=38.36 E-value=36 Score=21.16 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=19.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhH
Q 041050 22 EIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTL 69 (408)
Q Consensus 22 ~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (408)
.+...+|+|...-+. |-..+|+..-+-+.-.+-+.+|+..++|+.
T Consensus 3 nlvaqlenevaslen---enetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 3 NLVAQLENEVASLEN---ENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhc---ccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 344556666654333 223333332222222333445555555543
No 191
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=37.51 E-value=4.6e+02 Score=28.95 Aligned_cols=123 Identities=8% Similarity=0.040 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHc-CCCCHHHHHHHHHHHHHhccC-----ChhhHHHHHhcCc
Q 041050 152 EDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLR-SFEDETIRRVAAGAIANLAMN-----AEANQELIMAQGG 225 (408)
Q Consensus 152 ~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~-~~~~~~v~~~A~~aL~nLa~~-----~~~~~~~i~~~g~ 225 (408)
.+.+.|..|-..|..+-..+ .+...+...|. .+.++.+|..|+..|.|.... +++.+..|.+
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~--- 92 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEKC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN--- 92 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH---
T ss_pred CChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH---
Confidence 47788999988887764322 25555555453 456889999999999877432 1334443332
Q ss_pred HHHHHHHhhcC------CCHHHHHHHHHHHHHHhCC--c-hhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050 226 ISLLSTTAADA------EDPQTLRMVAGAIANLCGN--D-KLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 226 i~~Lv~lL~~~------~~~~v~~~a~~aL~nL~~~--~-~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~ 295 (408)
.++..+... .++.++..++.+++.++.. + .+ .+.++.|++++.. ++.....+..+|..|+.
T Consensus 93 --~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W------p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 93 --SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW------PDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp --HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC------TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 233333222 4577888899999988722 2 22 2345667777755 45566677788888763
No 192
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=36.62 E-value=53 Score=19.60 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=16.8
Q ss_pred HhHHHHHHHHhhhHHHHHHHHhhhh
Q 041050 67 KTLEDETLQKRKLEEEIVILRSQLL 91 (408)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~~~l~ 91 (408)
.|.+.+...+..++.++..|++.+.
T Consensus 8 dKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 8 XKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4455566667777777777777654
No 193
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=36.14 E-value=39 Score=29.61 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=50.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLA 210 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa 210 (408)
+..|..-|++.++.++..|+.+|-.+.. ++.....|....-+..|+.++.+..+..|+..++..+..-+
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4556677789999999999999998877 34555666665567777787765556788887776665443
No 194
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=35.99 E-value=53 Score=31.28 Aligned_cols=99 Identities=12% Similarity=0.033 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHHHHhccCChhhHHHHHhcC-cHHHHHHHhh----cC---CCHHHHHHHHHHHHHHhC-CchhHHHHH
Q 041050 193 FEDETIRRVAAGAIANLAMNAEANQELIMAQG-GISLLSTTAA----DA---EDPQTLRMVAGAIANLCG-NDKLQMKLR 263 (408)
Q Consensus 193 ~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g-~i~~Lv~lL~----~~---~~~~v~~~a~~aL~nL~~-~~~~~~~i~ 263 (408)
..++..+-.++.+++|+-.+ +.....++... ....++..+. .. .+..++..++..+.|++. .-..+.
T Consensus 210 ~~~~~n~MltlR~laNlF~~-~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~--- 285 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNN-ENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 285 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTC-TTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---
T ss_pred CCChhHHHHHHHHHHHhccC-cchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---
Confidence 35788888999999999998 77444444322 1233444331 11 245688888899999982 111000
Q ss_pred hcccHHHHHHhhc---------CCCHHHHHHHHHHHHHhhc
Q 041050 264 SEGGIRALLGMVR---------CGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 264 ~~g~l~~L~~lL~---------~~~~~v~~~a~~aL~nL~~ 295 (408)
+...+..+...+. ..|++....++-|+++|..
T Consensus 286 ~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 286 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 0122334555444 3588999999999999984
No 195
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.48 E-value=97 Score=25.61 Aligned_cols=39 Identities=33% Similarity=0.402 Sum_probs=28.3
Q ss_pred cchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 041050 56 SCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLT 94 (408)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 94 (408)
.....|+.++...|..+...|..+|.....+..-+.+++
T Consensus 54 ~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLT 92 (154)
T 2ocy_A 54 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 92 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888877777777777766666664
No 196
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=33.76 E-value=1.1e+02 Score=22.28 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhhhh
Q 041050 35 KTAEEELNKLKSRLGQY 51 (408)
Q Consensus 35 ~~~~~e~~~~~~~~~~~ 51 (408)
+.|=.||+.|+-.++++
T Consensus 22 E~L~qEi~~Lr~kv~el 38 (81)
T 3qh9_A 22 EELLQELRHLKIKVEEL 38 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666666665543
No 197
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=33.34 E-value=63 Score=25.23 Aligned_cols=14 Identities=29% Similarity=0.596 Sum_probs=6.5
Q ss_pred hhHhhHHHHHhHHH
Q 041050 58 RDAEMSKLHKTLED 71 (408)
Q Consensus 58 ~~~~~~~~~~~~~~ 71 (408)
++.||..+..+|++
T Consensus 76 LqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 76 LEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 198
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=33.34 E-value=66 Score=27.00 Aligned_cols=70 Identities=10% Similarity=0.113 Sum_probs=53.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcC-----CCCHHHHHHHHHHHHHhcc
Q 041050 142 LHKILSLLESEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRS-----FEDETIRRVAAGAIANLAM 211 (408)
Q Consensus 142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~-----~~~~~v~~~A~~aL~nLa~ 211 (408)
+..|..-+++.++.++..|+.+|-.+.. ++.....|.....+..|+.++.. ..+..|+..++..|..-+.
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5566677889999999999999998877 35566667777678889998862 2467899888888765544
No 199
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=32.91 E-value=1.4e+02 Score=21.74 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=21.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 041050 17 AEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESG 55 (408)
Q Consensus 17 ~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~ 55 (408)
++....|-..++.-+..-..++.|+..+|.+...+..+.
T Consensus 5 ~ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~ 43 (81)
T 2jee_A 5 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEV 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555666666666666655444333
No 200
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=32.62 E-value=1.7e+02 Score=22.57 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=4.9
Q ss_pred hhHHHHHHHHhh
Q 041050 78 KLEEEIVILRSQ 89 (408)
Q Consensus 78 ~~~~~~~~l~~~ 89 (408)
.+.+.+..|..+
T Consensus 94 ~L~~ql~~Lq~q 105 (110)
T 2v4h_A 94 YLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 201
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=32.30 E-value=1.4e+02 Score=22.23 Aligned_cols=54 Identities=26% Similarity=0.306 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhh
Q 041050 35 KTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQL 90 (408)
Q Consensus 35 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 90 (408)
+.+|.++..++.+-. ......+..++..+++++......+..++-++..|...+
T Consensus 33 ~~Le~~i~~l~~~~~--~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~ 86 (93)
T 3s4r_A 33 KILLAELEQLKGQGK--SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDI 86 (93)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544421 112224678888899999988888888887777654433
No 202
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=30.76 E-value=1.7e+02 Score=32.24 Aligned_cols=6 Identities=0% Similarity=0.523 Sum_probs=0.0
Q ss_pred HHHHHh
Q 041050 22 EIRKLL 27 (408)
Q Consensus 22 ~~~~~~ 27 (408)
+|...+
T Consensus 932 eLq~rL 937 (1080)
T 2dfs_A 932 QLQRKI 937 (1080)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 333333
No 203
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=30.68 E-value=1.1e+02 Score=21.81 Aligned_cols=32 Identities=22% Similarity=0.106 Sum_probs=22.4
Q ss_pred chhHhhHHHHHhHHHHHHHHhhhHHHHHHHHh
Q 041050 57 CRDAEMSKLHKTLEDETLQKRKLEEEIVILRS 88 (408)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 88 (408)
....|+....+-||.+..-|.+++-|+.--..
T Consensus 23 ~~r~e~~~ql~EYq~LlniKl~Le~EIatYRk 54 (74)
T 2xv5_A 23 EMRARMQQQLDEYQELLDIKLALDMEIHAYRK 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777888888888888877754433
No 204
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=30.49 E-value=1.7e+02 Score=21.96 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhh
Q 041050 35 KTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQL 90 (408)
Q Consensus 35 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 90 (408)
+.|.+....+..++.+..........|+..++|+++.....-+..++-+...+..+
T Consensus 19 e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kL 74 (101)
T 3u59_A 19 ENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444333333335567888888888866555555555554444443
No 205
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=29.87 E-value=1.3e+02 Score=20.14 Aligned_cols=47 Identities=13% Similarity=0.091 Sum_probs=22.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHH
Q 041050 19 DIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKL 65 (408)
Q Consensus 19 ~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (408)
.+..+...++...........++...+..+.+...+.....+++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544555555555555555544444433334444433
No 206
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=29.85 E-value=76 Score=18.88 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=16.1
Q ss_pred HhHHHHHHHHhhhHHHHHHHHhhhh
Q 041050 67 KTLEDETLQKRKLEEEIVILRSQLL 91 (408)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~~~l~ 91 (408)
.|.+.+...+..++.++..|++.+.
T Consensus 7 ~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 7 AKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 3445556666677777777776654
No 207
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=29.73 E-value=2.6e+02 Score=23.81 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=58.9
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 041050 15 SAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLT 94 (408)
Q Consensus 15 ~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 94 (408)
+..++++.-+...+.-..++..++.|++.-+..-.++. +.+..++..+.|+..++..+-..+..++...+..+....
T Consensus 7 s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE---~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~ 83 (189)
T 2v71_A 7 SLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELE---AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY 83 (189)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888888887766633232 234677778888888888888888888877777766665
Q ss_pred HHHHH
Q 041050 95 FEADQ 99 (408)
Q Consensus 95 ~~~~~ 99 (408)
.+..+
T Consensus 84 ~e~~~ 88 (189)
T 2v71_A 84 AQSYK 88 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 208
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=28.95 E-value=80 Score=18.86 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=16.9
Q ss_pred HhHHHHHHHHhhhHHHHHHHHhhhh
Q 041050 67 KTLEDETLQKRKLEEEIVILRSQLL 91 (408)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~~~l~ 91 (408)
.|.+.+...+..++.++..|++.+.
T Consensus 8 ~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 8 XKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 4455566777777888877777654
No 209
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=28.29 E-value=81 Score=29.38 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=27.9
Q ss_pred chhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 041050 57 CRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLT 94 (408)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 94 (408)
..+..+.+...+++.|...|..+|.-+.-++....-+.
T Consensus 28 ~~E~~Yn~~~dKmeqE~lrRRkLENSIdElKG~IRcFA 65 (333)
T 4etp_B 28 KQEKFYNDTYNTVCKELLRSRRLENSIIEQKGTMRVYA 65 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCcEEEEE
Confidence 34455566777888888999999988888777665553
No 210
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=28.08 E-value=4.5e+02 Score=25.97 Aligned_cols=112 Identities=15% Similarity=0.177 Sum_probs=79.2
Q ss_pred HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCH-H-HHHHHHHHHHHH
Q 041050 175 EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDP-Q-TLRMVAGAIANL 252 (408)
Q Consensus 175 ~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-~-v~~~a~~aL~nL 252 (408)
+.+.+.=.+.-++.-|.+ .++.+...|+.+|. . ..-++.+..++.+..|+.++.+.+.+ + +...+-.++..|
T Consensus 110 d~VLevysve~i~~aL~S-~~~~l~~~~ckVI~----~-s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~L 183 (500)
T 3vld_A 110 DDVLEVYSAEDLVKALRS-EIDPLKVAACRVIE----N-SQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERL 183 (500)
T ss_dssp HHHHHHSCHHHHHHHHTS-SCHHHHHHHHHHHH----T-CSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhc-CChHHHHHHHHHhc----c-cCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHc
Confidence 445666678889999986 47888888999888 3 66778888999999999988654332 3 777777888888
Q ss_pred hCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 041050 253 CGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANF 293 (408)
Q Consensus 253 ~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL 293 (408)
+.+.-.|..+.+ ..++.+..+=++.++-+.......+.-+
T Consensus 184 ssdeLirrril~-nnl~lL~~vK~~~~~i~~sRLLdll~il 223 (500)
T 3vld_A 184 STDELIRRRLFD-NNLPYLVSVKGRMETVSFVRLIDFLTIE 223 (500)
T ss_dssp TTSHHHHHHHHT-TTHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHH-HhHHHHHHHhcCCCceeHHHHHHHHHHH
Confidence 877767777775 4566555554556666555444444443
No 211
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=27.86 E-value=3.2e+02 Score=24.27 Aligned_cols=16 Identities=6% Similarity=0.152 Sum_probs=8.6
Q ss_pred hHhhHHHHHhHHHHHH
Q 041050 59 DAEMSKLHKTLEDETL 74 (408)
Q Consensus 59 ~~~~~~~~~~~~~~~~ 74 (408)
..++.+.+++|+..-.
T Consensus 129 ~~~l~KaKk~Y~~~~~ 144 (301)
T 2efk_A 129 FKQLENSKRKFERDCR 144 (301)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455556666655443
No 212
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=27.83 E-value=1.8e+02 Score=21.23 Aligned_cols=19 Identities=32% Similarity=0.260 Sum_probs=8.2
Q ss_pred HHhhhHHHHHHHHhhhhhh
Q 041050 75 QKRKLEEEIVILRSQLLQL 93 (408)
Q Consensus 75 ~~~~~~~~~~~l~~~l~~~ 93 (408)
.+..+.++...|+.....|
T Consensus 49 ~~~~L~~en~qLk~E~~~w 67 (81)
T 2jee_A 49 QREELERENNHLKEQQNGW 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333
No 213
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=27.64 E-value=1e+02 Score=18.59 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=15.0
Q ss_pred hHHHHHHHHhhhHHHHHHHHhhhhh
Q 041050 68 TLEDETLQKRKLEEEIVILRSQLLQ 92 (408)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~l~~~l~~ 92 (408)
+.+.+...+..++.++..|++.+.+
T Consensus 9 KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 9 KVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 3444555556667777777766654
No 214
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=27.53 E-value=1.4e+02 Score=21.71 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=18.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 041050 26 LLQNEIHMRKTAEEELNKLKSRLGQYTESG 55 (408)
Q Consensus 26 ~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~ 55 (408)
.+++=-.++..||+.|..++..+++.+.+-
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~s~~~q 43 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEEARAER 43 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444556678888888888777554433
No 215
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=27.51 E-value=88 Score=18.72 Aligned_cols=24 Identities=17% Similarity=0.128 Sum_probs=14.7
Q ss_pred hHHHHHHHHhhhHHHHHHHHhhhh
Q 041050 68 TLEDETLQKRKLEEEIVILRSQLL 91 (408)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~l~~~l~ 91 (408)
|.+.+...+..++.++..|++.+.
T Consensus 9 KVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 9 KGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHc
Confidence 344455666667777777776654
No 216
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=27.01 E-value=1.5e+02 Score=20.26 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=26.5
Q ss_pred chhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhh
Q 041050 57 CRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLL 91 (408)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 91 (408)
.++.|...+++-++.+.+.|..+|+.+..+.++..
T Consensus 18 eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n 52 (61)
T 3l4f_A 18 ELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMN 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34455667777888888999999999988877754
No 217
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=26.98 E-value=3.8e+02 Score=24.77 Aligned_cols=98 Identities=15% Similarity=0.085 Sum_probs=66.3
Q ss_pred cCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhC--CHHHHHHHHcC------CCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050 150 ESEDANVRIHAVKVVANLAA-EEANQEKIVEAG--GLSSLLMLLRS------FEDETIRRVAAGAIANLAMNAEANQELI 220 (408)
Q Consensus 150 ~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g--~i~~L~~lL~~------~~~~~v~~~A~~aL~nLa~~~~~~~~~i 220 (408)
.+.++.+++.|+++++..-. +|.....|.+.- -+..++.-|.. .....+.+.-+++|-.|..++...
T Consensus 80 ~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F---- 155 (315)
T 3qml_C 80 ENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL---- 155 (315)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC----
T ss_pred ccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh----
Confidence 45677899999999997766 777666665532 24444443321 124567777889999999883212
Q ss_pred HhcCcHHHHHHHhhcCC--CHHHHHHHHHHHHHHh
Q 041050 221 MAQGGISLLSTTAADAE--DPQTLRMVAGAIANLC 253 (408)
Q Consensus 221 ~~~g~i~~Lv~lL~~~~--~~~v~~~a~~aL~nL~ 253 (408)
...|+..|..++. .. ++.+++.++..+..+-
T Consensus 156 -~~~~m~~L~~ly~-~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 156 -PIYSTVVLQNVYE-RNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp ---CCHHHHHHHHH-HTTTCHHHHHHHHHHHHHHH
T ss_pred -hhccHHHHHHHHc-cCCCCHHHHHHHHHHHHHHc
Confidence 2457788888764 35 8899999988888765
No 218
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=26.83 E-value=1.1e+02 Score=22.55 Aligned_cols=15 Identities=40% Similarity=0.492 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHh
Q 041050 34 RKTAEEELNKLKSRL 48 (408)
Q Consensus 34 ~~~~~~e~~~~~~~~ 48 (408)
++.-.+.+.+||+.+
T Consensus 35 rqkekEqL~~LKkkl 49 (84)
T 1gmj_A 35 RARAKEQLAALKKHK 49 (84)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555555543
No 219
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=26.70 E-value=90 Score=18.67 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=15.0
Q ss_pred HhHHHHHHHHhhhHHHHHHHHhhhh
Q 041050 67 KTLEDETLQKRKLEEEIVILRSQLL 91 (408)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~~~l~ 91 (408)
-|.+.+...+..++.++..|++.+.
T Consensus 8 dKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 8 DKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhc
Confidence 3444555666667777777766553
No 220
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=26.65 E-value=1.9e+02 Score=32.03 Aligned_cols=71 Identities=13% Similarity=0.094 Sum_probs=27.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhh
Q 041050 20 IAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQL 90 (408)
Q Consensus 20 ~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 90 (408)
+..+...++......+.+++++..++.+..++.........++.++...++....+...+++.+..+...+
T Consensus 866 L~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~el 936 (1184)
T 1i84_S 866 LQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARI 936 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444333322222233333333333333334444444444444433
No 221
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=26.56 E-value=2e+02 Score=21.30 Aligned_cols=54 Identities=20% Similarity=0.355 Sum_probs=32.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHH
Q 041050 18 EDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLED 71 (408)
Q Consensus 18 ~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (408)
...+-+..-+|.|...++.+-.+-..+++.+..+..+++.-...+.+++-++.+
T Consensus 4 n~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd 57 (101)
T 1d7m_A 4 NRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888877776665555555555555555555445555555555443
No 222
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=26.36 E-value=2.1e+02 Score=21.49 Aligned_cols=59 Identities=20% Similarity=0.222 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhhH
Q 041050 30 EIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLTF 95 (408)
Q Consensus 30 e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 95 (408)
+..+.+..-+.+..|+.|+. -+.++|..=+.-=+.....++.+.+.+..|..++..+..
T Consensus 31 ~~~q~~~~~E~i~vLk~Qv~-------IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~~ 89 (94)
T 3jsv_C 31 EAEQHKIVMETVPVLKAQAD-------IYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKV 89 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566666666654 233333322222222234455666666777666665553
No 223
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.11 E-value=3e+02 Score=27.39 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=20.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 041050 17 AEDIAEIRKLLQNEIHMRKTAEEELNKLKSRL 48 (408)
Q Consensus 17 ~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~ 48 (408)
.+.|.+|+..+++=.+.++..+.-++.+...|
T Consensus 63 tkrINELKnqLEdlsKnsKdseqy~k~~~E~L 94 (562)
T 3ghg_A 63 TNRINKLKNSLFEYQKNNKDSHSLTTNIMEIL 94 (562)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Confidence 45677777777776666666555555555554
No 224
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=25.46 E-value=3.5e+02 Score=23.86 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=17.4
Q ss_pred hHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhh
Q 041050 59 DAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQ 92 (408)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 92 (408)
.+|+..+.+.++........+++++.-+......
T Consensus 89 ~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~ 122 (256)
T 3na7_A 89 ERELRSLNIEEDIAKERSNQANREIENLQNEIKR 122 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544444433
No 225
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=24.94 E-value=2.8e+02 Score=22.52 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=57.6
Q ss_pred hCCchhHHHHHhcccHHHHHHhhc------CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCc
Q 041050 253 CGNDKLQMKLRSEGGIRALLGMVR------CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGA 326 (408)
Q Consensus 253 ~~~~~~~~~i~~~g~l~~L~~lL~------~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~ 326 (408)
......+..+++.|++..+-..|. -++..+++....+|.+|-. + +..+.+.|+
T Consensus 48 l~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI------------------~---~e~Lk~Sgl 106 (145)
T 2xpp_A 48 LMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKI------------------H---KEHLVTSGV 106 (145)
T ss_dssp HTCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC------------------C---HHHHHHHCH
T ss_pred HhhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCC------------------C---HHHhhcCCC
Confidence 356677899999999999999885 2467899999999999853 1 345666666
Q ss_pred HHHHHHhccC--CCHHHHHHHHHHHHHHc
Q 041050 327 LPWIVQNANN--EAAPIRRHIELALCHLA 353 (408)
Q Consensus 327 l~~Lv~lL~~--~~~~v~~~a~~aL~~La 353 (408)
-..++-+-++ +.++.++.|-..+...+
T Consensus 107 Gkvv~~l~k~~~et~~nk~la~~Li~~Ws 135 (145)
T 2xpp_A 107 GKIVYFYSINPKESKEVRASAKALVQKWT 135 (145)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHH
T ss_pred CcchhhhhcCCccCHHHHHHHHHHHHHHH
Confidence 5555555544 47788888887776544
No 226
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=24.92 E-value=54 Score=24.64 Aligned_cols=17 Identities=41% Similarity=0.522 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhhh
Q 041050 34 RKTAEEELNKLKSRLGQ 50 (408)
Q Consensus 34 ~~~~~~e~~~~~~~~~~ 50 (408)
++++|+||..||.+|+.
T Consensus 70 Kq~YEeEI~rLr~eLe~ 86 (92)
T 3vp9_A 70 KDAYEEEIKHLKLGLEQ 86 (92)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47788888888888764
No 227
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=24.21 E-value=6.6e+02 Score=27.67 Aligned_cols=134 Identities=8% Similarity=-0.013 Sum_probs=77.6
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh-cCCCHHHHHHHHHHHHHHhC------CchhHH
Q 041050 188 MLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAA-DAEDPQTLRMVAGAIANLCG------NDKLQM 260 (408)
Q Consensus 188 ~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~v~~~a~~aL~nL~~------~~~~~~ 260 (408)
.++..+.+...|..|-..|-++-.+ + ++...+...|. .+.++.++..++.+|-|... +++.+.
T Consensus 19 ~~~~p~~~~~~r~~Ae~~L~~~~~~-p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~ 88 (1204)
T 3a6p_A 19 VMMDPNSTQRYRLEALKFCEEFKEK-C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV 88 (1204)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHHHH-C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH
T ss_pred HHhCCCCChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 3344324667888888887776544 2 24444444443 55678899999999998861 334444
Q ss_pred HHHhcccHHHHHHhhc---CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC
Q 041050 261 KLRSEGGIRALLGMVR---CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE 337 (408)
Q Consensus 261 ~i~~~g~l~~L~~lL~---~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~ 337 (408)
.|.+ ..+..+..... ...+.++...+.+++.++..+-. ..+ .+.++.|+.++.+
T Consensus 89 ~Ir~-~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p---------------~~W------p~ll~~L~~~~~~- 145 (1204)
T 3a6p_A 89 YLKN-SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP---------------QHW------PDMLIELDTLSKQ- 145 (1204)
T ss_dssp HHHH-HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST---------------TTC------TTHHHHHHHHHHT-
T ss_pred HHHH-HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc---------------ccc------hHHHHHHHHHhcC-
Confidence 4443 33443333211 14578888899999998862100 111 2456666666654
Q ss_pred CHHHHHHHHHHHHHHcc
Q 041050 338 AAPIRRHIELALCHLAQ 354 (408)
Q Consensus 338 ~~~v~~~a~~aL~~La~ 354 (408)
++..+..+..+|..++.
T Consensus 146 ~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 146 GETQTELVMFILLRLAE 162 (1204)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34445556666666653
No 228
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.94 E-value=1.8e+02 Score=28.29 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=11.1
Q ss_pred hcccccchhHhhHHHHHhHHHHHHH
Q 041050 51 YTESGSCRDAEMSKLHKTLEDETLQ 75 (408)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (408)
+++....+...+.+...+|++...+
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 454 LKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHhcccHHHHHHHH
Confidence 3333334444444444555554433
No 229
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=23.55 E-value=1.4e+02 Score=37.07 Aligned_cols=25 Identities=4% Similarity=0.158 Sum_probs=10.1
Q ss_pred hHhhHHHHHhHHHHHHHHhhhHHHH
Q 041050 59 DAEMSKLHKTLEDETLQKRKLEEEI 83 (408)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (408)
++++.+++.+|+....++..++.++
T Consensus 2041 e~~l~~L~~~~~~~~~ek~~L~~e~ 2065 (3245)
T 3vkg_A 2041 EKSIATYKEEYATLIRETEQIKTES 2065 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443333
No 230
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=23.43 E-value=1.8e+02 Score=20.44 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=9.3
Q ss_pred CCCchHHHHHHHHHhHHHHHHH
Q 041050 13 GASAAEDIAEIRKLLQNEIHMR 34 (408)
Q Consensus 13 ~~~~~~~~~~~~~~~~~e~~~~ 34 (408)
++++.+-....-+.|+.|+..+
T Consensus 9 ~~~~~~~~~~~l~~Lr~eL~~K 30 (75)
T 3a7o_A 9 IVSHDDALLNTLAILQKELKSK 30 (75)
T ss_dssp ---CHHHHHHHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHHH
Confidence 3445444444555555555433
No 231
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=23.23 E-value=1.8e+02 Score=21.82 Aligned_cols=79 Identities=22% Similarity=0.305 Sum_probs=31.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhh--hHHHH
Q 041050 21 AEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQL--TFEAD 98 (408)
Q Consensus 21 ~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~ 98 (408)
..+++-++.|...+. .++..|+.++.........-+.++.+++. +..+.....+.+..|+-|..-. .|.++
T Consensus 2 ~~~~~~~~~~~~~~~---~ei~~L~~~L~~AEeaL~~KQ~~ideLKe----~i~q~~~~~E~i~vL~aQ~~iY~~DF~aE 74 (96)
T 3fx0_A 2 SHMKSSVVGSERKRG---MQLEDLKQQLQQAEEALVAKQEVIDKLKE----EAEQHKIVMETVPVLKAQADIYKADFQAE 74 (96)
T ss_dssp ---------------------------CCSSTTTTTTTTTHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344555555554444 37788888876544444444555666555 3344445566677777775544 46666
Q ss_pred H-HHhhhhc
Q 041050 99 Q-MQKCLER 106 (408)
Q Consensus 99 ~-~r~~~~~ 106 (408)
+ +|.++-.
T Consensus 75 RaaREk~~~ 83 (96)
T 3fx0_A 75 RQAREKLAE 83 (96)
T ss_dssp HHHHHHTSS
T ss_pred HHHHHHHHh
Confidence 6 6665543
No 232
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=22.76 E-value=64 Score=28.12 Aligned_cols=62 Identities=13% Similarity=0.056 Sum_probs=45.2
Q ss_pred cHHHHHHhccCCCHHHHHHHHHHHHHHccCc--hhHHHHHhCCcHHHHHHHHhcCCHHHHHHHH
Q 041050 326 ALPWIVQNANNEAAPIRRHIELALCHLAQHE--VNAREMISGGALWELVRISRDCSREDIRSLA 387 (408)
Q Consensus 326 ~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~--~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A 387 (408)
++..|.+.+.+.++.++..|...|-.+..+- .-...+.+...+..|+.++....+..++..+
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~ki 106 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKM 106 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHH
Confidence 4557777888899999999999999988873 3345555666888888888765544444433
No 233
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=22.70 E-value=7.4 Score=30.31 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHH
Q 041050 35 KTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDET 73 (408)
Q Consensus 35 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (408)
+.+|.++..++.+.+.+..+++.+..|+..++.+|+.+.
T Consensus 61 ~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~ 99 (107)
T 3a5t_A 61 EELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQ 99 (107)
T ss_dssp HHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666667777777777777777777777654
No 234
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=22.40 E-value=2.9e+02 Score=22.49 Aligned_cols=70 Identities=9% Similarity=0.117 Sum_probs=48.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCchhHHHHHhcccHHH-HHHhhc---CCCHHHHHHHHHHHHHhhc
Q 041050 226 ISLLSTTAADAEDPQTLRMVAGAIANLC--GNDKLQMKLRSEGGIRA-LLGMVR---CGHPDVLSQVARGIANFAK 295 (408)
Q Consensus 226 i~~Lv~lL~~~~~~~v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~-L~~lL~---~~~~~v~~~a~~aL~nL~~ 295 (408)
+..|..-|.+..++.+...|+..|-.+. +.+..+..+.+...+.- |+.++. .++..|+..+...+..-+.
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 3455555544567888888888887777 33677777878788887 788773 2345788888877777653
No 235
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=22.25 E-value=1.1e+02 Score=19.63 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=28.3
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHhccHhhHHHHHh
Q 041050 367 ALWELVRISRDCSREDIRSLAHRTLSSSLTFRAEMRR 403 (408)
Q Consensus 367 ~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~~~~~~~ 403 (408)
++..|++-+++++......-...+|.++|...+.+-+
T Consensus 2 aLqqLl~tlksp~sp~qqqqvl~ILksnPqLMAAfIk 38 (47)
T 1zoq_C 2 ALQDLLRTLKSPSSPQQQQQVLNILKSNPQLMAAFIK 38 (47)
T ss_dssp HHHHHHHTCCSCCCHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHcCHHHHHHHHH
Confidence 4566777778777666777788999999998876643
No 236
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=21.82 E-value=1.7e+02 Score=19.39 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=16.9
Q ss_pred hhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhh
Q 041050 58 RDAEMSKLHKTLEDETLQKRKLEEEIVILRSQ 89 (408)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (408)
...++.+++..|......-...-+.+..++.+
T Consensus 24 ~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 24 KTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555444
No 237
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=21.78 E-value=1.3e+02 Score=17.41 Aligned_cols=30 Identities=33% Similarity=0.379 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHH
Q 041050 39 EELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDET 73 (408)
Q Consensus 39 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (408)
+|+.++++.+= +. ...-|+++++|++..+.
T Consensus 4 eelekkfkelw--kg---prrgeieelhkkfheli 33 (35)
T 1qp6_A 4 EELEKKFKELW--KG---PRRGEIEELHKKFHELI 33 (35)
T ss_dssp HHHHHHHHHHH--SS---SCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cC---CccchHHHHHHHHHHHh
Confidence 34555555432 22 34678999999988754
No 238
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=21.77 E-value=2.2e+02 Score=20.72 Aligned_cols=49 Identities=18% Similarity=0.100 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHH
Q 041050 39 EELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILR 87 (408)
Q Consensus 39 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (408)
-++...+..+.++..+......++....+-||.+..-|.+++-||.--.
T Consensus 28 ~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYR 76 (86)
T 1x8y_A 28 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3444444555544444455667777777888888888888887775433
No 239
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=21.14 E-value=4e+02 Score=23.01 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=11.3
Q ss_pred hHhhHHHHHhHHHHHHHHhhhHHHH
Q 041050 59 DAEMSKLHKTLEDETLQKRKLEEEI 83 (408)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (408)
..++.++.+.|+.....+...|.++
T Consensus 152 ~~~~~~l~~qlE~~v~~K~~~E~~L 176 (213)
T 1ik9_A 152 LRDWNDVQGRFEKAVSAKEALETDL 176 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 240
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=20.99 E-value=3e+02 Score=24.31 Aligned_cols=38 Identities=11% Similarity=0.196 Sum_probs=19.3
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 041050 16 AAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTE 53 (408)
Q Consensus 16 ~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~ 53 (408)
..++..-+.+-++.-..+...+|+++..+...++..+.
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~ 125 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSE 125 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555443333
No 241
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=20.80 E-value=1.4e+02 Score=21.67 Aligned_cols=43 Identities=14% Similarity=0.272 Sum_probs=19.4
Q ss_pred hhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhhHHHHHHHhh
Q 041050 61 EMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLTFEADQMQKC 103 (408)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~ 103 (408)
.+..++..+++-...|..+..++..+...|.---++-...|..
T Consensus 28 ~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqg 70 (79)
T 3cvf_A 28 QLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREG 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3334444444444445555555555555544433333333433
No 242
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=20.45 E-value=4.5e+02 Score=23.26 Aligned_cols=14 Identities=7% Similarity=0.309 Sum_probs=6.3
Q ss_pred HhhHHHHHhHHHHH
Q 041050 60 AEMSKLHKTLEDET 73 (408)
Q Consensus 60 ~~~~~~~~~~~~~~ 73 (408)
.++.+++++|+...
T Consensus 137 ~~l~KaK~~Y~~~~ 150 (305)
T 2efl_A 137 KQLESSKRRFERDC 150 (305)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 243
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=20.41 E-value=1.9e+02 Score=23.70 Aligned_cols=69 Identities=10% Similarity=0.063 Sum_probs=49.1
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHH-HHHHHcC--CCCHHHHHHHHHHHHHhc
Q 041050 142 LHKILSLLE-SEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSS-LLMLLRS--FEDETIRRVAAGAIANLA 210 (408)
Q Consensus 142 v~~Ll~lL~-s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~-L~~lL~~--~~~~~v~~~A~~aL~nLa 210 (408)
+..|..-|+ +.++.++..|+.+|-.+.. ++.....+....-+.. |+.++.. ..+..|+..++..|..-+
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 455666676 5889999999999988876 4666666766666777 7888742 234678887777765443
No 244
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=20.09 E-value=1.5e+02 Score=17.57 Aligned_cols=24 Identities=17% Similarity=0.065 Sum_probs=13.2
Q ss_pred hHHHHHHHHhhhHHHHHHHHhhhh
Q 041050 68 TLEDETLQKRKLEEEIVILRSQLL 91 (408)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~l~~~l~ 91 (408)
|.+.++..+..++.++..+++.+.
T Consensus 8 KVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 8 KIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhc
Confidence 334445555566666666665543
Done!