Query 041051
Match_columns 168
No_of_seqs 170 out of 1337
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 04:55:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041051.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041051hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a2e_A Ginkbilobin-2; domain 2 100.0 2.2E-30 7.6E-35 179.6 11.7 103 61-165 6-108 (108)
2 2e79_A Ginkbilobin-2; DUF26 fo 100.0 4.5E-30 1.5E-34 178.1 11.9 107 57-165 2-108 (108)
3 3a2e_A Ginkbilobin-2; domain 2 99.8 3.6E-20 1.2E-24 128.1 5.4 52 1-52 57-108 (108)
4 2e79_A Ginkbilobin-2; DUF26 fo 99.8 1.7E-19 5.9E-24 124.6 5.4 52 1-52 57-108 (108)
5 2kto_A LCHB; lichenicidin VK21 29.2 58 0.002 16.4 2.6 18 17-34 10-27 (32)
6 1gff_3 Bacteriophage G4 capsid 21.4 39 0.0013 16.0 1.0 11 32-42 11-21 (26)
7 1m06_J J protein, small core p 13.3 30 0.001 16.5 -0.5 10 32-41 10-19 (26)
8 2xk0_A Polycomb protein PCL; t 11.8 92 0.0031 18.8 1.2 12 41-52 42-53 (69)
9 1weo_A Cellulose synthase, cat 11.1 81 0.0028 20.2 0.9 19 126-144 44-62 (93)
10 2bid_A Protein (BID); programm 10.0 2E+02 0.0069 20.8 2.7 22 12-33 122-143 (197)
No 1
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.97 E-value=2.2e-30 Score=179.58 Aligned_cols=103 Identities=24% Similarity=0.475 Sum_probs=94.3
Q ss_pred eeeecccccCcchhhhhHHHHHHHHHHHHHhccCCCceeeeeeecccCCcceEEEEEecCCCCChhchHHHHHHHHhhcc
Q 041051 61 KYFMWNVNNVSNRVTFNQKSKELLSRLANEASGNPKLYAAGELELNEESKKKIYGLAQCTRDLSYNDCKMCLDRIIGDLP 140 (168)
Q Consensus 61 ~~~~~~~~~~~~~~~f~~~~~~ll~~l~~~a~~s~~~fa~~~~~~~~~~~~~vYglaQC~~Dls~~~C~~CL~~a~~~~~ 140 (168)
..+.||.++++.++.|+++|+.||..|+.+++.++.+|+++..+.. ++++||||+||+|||++++|..||+.++.+|+
T Consensus 6 v~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~--~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~~ 83 (108)
T 3a2e_A 6 VSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSG--GAPTAYGRATCKQSISQSDCTACLSNLVNRIF 83 (108)
T ss_dssp EEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCST--TCCCEEEEEEECTTSCHHHHHHHHHHHHTTHH
T ss_pred eeeecCCCccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCC--CCceEEEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 4577888899999999999999999999998876677888776543 67899999999999999999999999999999
Q ss_pred ccCCCCcceEEEcCceeEEEecCCC
Q 041051 141 SCCDGKQGGRVITASCIINYEIYPF 165 (168)
Q Consensus 141 ~~c~~~~g~~v~~~~C~lRy~~~~F 165 (168)
++|++++||+||+++|+||||+++|
T Consensus 84 ~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 84 SICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHCCCCceEEEECCCEEEEEeCCcC
Confidence 9999999999999999999999998
No 2
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.97 E-value=4.5e-30 Score=178.06 Aligned_cols=107 Identities=23% Similarity=0.461 Sum_probs=95.9
Q ss_pred cCCceeeecccccCcchhhhhHHHHHHHHHHHHHhccCCCceeeeeeecccCCcceEEEEEecCCCCChhchHHHHHHHH
Q 041051 57 DNGTKYFMWNVNNVSNRVTFNQKSKELLSRLANEASGNPKLYAAGELELNEESKKKIYGLAQCTRDLSYNDCKMCLDRII 136 (168)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~f~~~~~~ll~~l~~~a~~s~~~fa~~~~~~~~~~~~~vYglaQC~~Dls~~~C~~CL~~a~ 136 (168)
++.+.++.|+.++++.++.|++++..||.+|+.+++.++.+|++++++.+ +.++||||+||+|||++++|..||+.++
T Consensus 2 ~t~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~f~~~~~g~~--~~~~vYgl~qC~~Dls~~~C~~Cl~~a~ 79 (108)
T 2e79_A 2 NTAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSG--GAPTAYGRATCKQSISQSDCTACLSNLV 79 (108)
T ss_dssp CCCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCCT--TCCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceeeeeeCCCCeeCCcchHHHHHHHHHHHHHHHhhcCCcccEEEecCCC--CCCcEEEEEecCCCCChHHHHHHHHHHH
Confidence 34566788888888989999999999999999998765567888876552 3479999999999999999999999999
Q ss_pred hhccccCCCCcceEEEcCceeEEEecCCC
Q 041051 137 GDLPSCCDGKQGGRVITASCIINYEIYPF 165 (168)
Q Consensus 137 ~~~~~~c~~~~g~~v~~~~C~lRy~~~~F 165 (168)
.+++++|++++||+||+++|+||||+++|
T Consensus 80 ~~~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 80 NRIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp TTHHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHHHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 99999999999999999999999999998
No 3
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.80 E-value=3.6e-20 Score=128.07 Aligned_cols=52 Identities=29% Similarity=0.672 Sum_probs=51.1
Q ss_pred CEeEEecCCCChhchHHHHHHHHHHHHhhCCCCceEEEEccccEEEEecCcc
Q 041051 1 NGLALCRGDVSASDCKRCVADAVSTIRKSCPYSKSAKIFYDNCMFKYSNDNF 52 (168)
Q Consensus 1 ygl~~CrgD~~~~~C~~Cv~~A~~~~~~~Cp~~~~a~i~~d~C~lrys~~~f 52 (168)
|||+|||+|+++++|+.||+.|+.+|.+.||++++|+||+|.|+|||++++|
T Consensus 57 ygl~qC~~Dls~~~C~~Cl~~a~~~~~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 57 YGRATCKQSISQSDCTACLSNLVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTTHHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHCCCCceEEEECCCEEEEEeCCcC
Confidence 8999999999999999999999999999999999999999999999999987
No 4
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.78 E-value=1.7e-19 Score=124.64 Aligned_cols=52 Identities=29% Similarity=0.672 Sum_probs=50.9
Q ss_pred CEeEEecCCCChhchHHHHHHHHHHHHhhCCCCceEEEEccccEEEEecCcc
Q 041051 1 NGLALCRGDVSASDCKRCVADAVSTIRKSCPYSKSAKIFYDNCMFKYSNDNF 52 (168)
Q Consensus 1 ygl~~CrgD~~~~~C~~Cv~~A~~~~~~~Cp~~~~a~i~~d~C~lrys~~~f 52 (168)
|||+|||||+++++|+.||+.|+.++.+.||++++|+||++.|+|||++++|
T Consensus 57 Ygl~qC~~Dls~~~C~~Cl~~a~~~~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 57 YGRATCKQSISQSDCTACLSNLVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTTHHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred EEEEecCCCCChHHHHHHHHHHHHHHHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999987
No 5
>2kto_A LCHB; lichenicidin VK21, lantibiotics, antibiotic, lanthioni thioester, two-component lantibiotic system; HET: 2KT DBU DBB; NMR {Bacillus licheniformis}
Probab=29.20 E-value=58 Score=16.42 Aligned_cols=18 Identities=28% Similarity=0.696 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhhCCCCc
Q 041051 17 RCVADAVSTIRKSCPYSK 34 (168)
Q Consensus 17 ~Cv~~A~~~~~~~Cp~~~ 34 (168)
.|+..++.....+||..|
T Consensus 10 ~Ci~a~v~vsaa~CPTTK 27 (32)
T 2kto_A 10 TCIXAGVXVAASLCPXXK 27 (32)
T ss_dssp HHHHHHHHHHHHHSTTSS
T ss_pred ceEeEEEEEeeeecccch
Confidence 588888888788999754
No 6
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=21.39 E-value=39 Score=16.02 Aligned_cols=11 Identities=36% Similarity=0.622 Sum_probs=8.7
Q ss_pred CCceEEEEccc
Q 041051 32 YSKSAKIFYDN 42 (168)
Q Consensus 32 ~~~~a~i~~d~ 42 (168)
.+|+|+.||-+
T Consensus 11 r~kgarlwyvg 21 (26)
T 1gff_3 11 KSKGARLWYVG 21 (26)
T ss_pred CCCceEEEEec
Confidence 47999999853
No 7
>1m06_J J protein, small core protein; bacteriophage, virion; HET: 3DR; 3.50A {Enterobacteria phage ALPHA3}
Probab=13.30 E-value=30 Score=16.49 Aligned_cols=10 Identities=30% Similarity=0.600 Sum_probs=8.1
Q ss_pred CCceEEEEcc
Q 041051 32 YSKSAKIFYD 41 (168)
Q Consensus 32 ~~~~a~i~~d 41 (168)
.+|+|+.||-
T Consensus 10 r~kgarlwyv 19 (26)
T 1m06_J 10 RRKGARLWYV 19 (26)
T ss_dssp CCSSSCCCCS
T ss_pred cCCceEEEEE
Confidence 4689999985
No 8
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=11.77 E-value=92 Score=18.83 Aligned_cols=12 Identities=8% Similarity=0.476 Sum_probs=9.5
Q ss_pred cccEEEEecCcc
Q 041051 41 DNCMFKYSNDNF 52 (168)
Q Consensus 41 d~C~lrys~~~f 52 (168)
+.|++||.+++-
T Consensus 42 ~~ClV~FeD~S~ 53 (69)
T 2xk0_A 42 DQYLIRFDDQSE 53 (69)
T ss_dssp SCEEEEETTCCE
T ss_pred ceEEEEecCCcc
Confidence 469999998763
No 9
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=11.11 E-value=81 Score=20.19 Aligned_cols=19 Identities=16% Similarity=0.431 Sum_probs=17.5
Q ss_pred hchHHHHHHHHhhccccCC
Q 041051 126 NDCKMCLDRIIGDLPSCCD 144 (168)
Q Consensus 126 ~~C~~CL~~a~~~~~~~c~ 144 (168)
.-|+.|+..-..+-.+.||
T Consensus 44 PvCrpCyEYErkeG~q~Cp 62 (93)
T 1weo_A 44 PACRPCYEYERREGTQNCP 62 (93)
T ss_dssp CCCHHHHHHHHHTSCSSCT
T ss_pred hhhHHHHHHHHhccCcccc
Confidence 5799999999999999998
No 10
>2bid_A Protein (BID); programmed cell death, apoptosis regulation and amplification; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=9.96 E-value=2e+02 Score=20.83 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=18.1
Q ss_pred hhchHHHHHHHHHHHHhhCCCC
Q 041051 12 ASDCKRCVADAVSTIRKSCPYS 33 (168)
Q Consensus 12 ~~~C~~Cv~~A~~~~~~~Cp~~ 33 (168)
..+=+.|+++|...+.+.+|..
T Consensus 122 EEdrr~~LAaaleql~Qt~P~D 143 (197)
T 2bid_A 122 EEDRNRDLATALEQLLQAYPRD 143 (197)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHHHHHHHCCCc
Confidence 4455679999999999999963
Done!