Query 041051
Match_columns 168
No_of_seqs 170 out of 1337
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 04:55:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041051.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041051hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cupa3 g.39.1.3 (A:8-34) Four 18.0 19 0.0014 16.3 0.7 8 37-44 20-27 (27)
2 d1f32a_ d.62.1.1 (A:) Pepsin i 10.9 62 0.0046 20.8 2.0 20 27-46 62-81 (147)
3 d1g25a_ g.44.1.1 (A:) TFIIH Ma 10.7 32 0.0023 18.6 0.4 20 13-32 29-48 (65)
4 d1cl4a_ g.40.1.1 (A:) Nucleoca 10.1 8.5 0.00062 18.5 -2.0 20 27-46 2-21 (32)
5 d2bida_ f.1.4.1 (A:) Proapopto 9.0 1.1E+02 0.0079 20.5 2.7 23 11-33 121-143 (197)
6 d1wiga2 g.39.1.3 (A:33-73) Act 8.6 49 0.0035 16.5 0.6 11 147-157 18-28 (41)
7 d1vqoe2 d.141.1.1 (E:80-172) R 8.5 51 0.0037 19.7 0.8 28 19-46 62-90 (93)
8 d1ha9a_ g.3.2.1 (A:) Trypsin i 7.4 37 0.0027 16.0 -0.2 7 116-122 12-18 (34)
9 d2o35a1 a.293.1.1 (A:2-80) Hyp 7.1 67 0.0049 18.4 0.8 11 126-136 39-49 (79)
10 d1weoa_ g.44.1.1 (A:) Cellulos 7.1 81 0.0059 18.5 1.2 19 126-144 44-62 (93)
No 1
>d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.95 E-value=19 Score=16.27 Aligned_cols=8 Identities=25% Similarity=0.974 Sum_probs=5.8
Q ss_pred EEEccccE
Q 041051 37 KIFYDNCM 44 (168)
Q Consensus 37 ~i~~d~C~ 44 (168)
+.|.|.||
T Consensus 20 r~wh~~cf 27 (27)
T d2cupa3 20 RFWHDTCF 27 (27)
T ss_dssp EEEETTTC
T ss_pred cccccccC
Confidence 56888885
No 2
>d1f32a_ d.62.1.1 (A:) Pepsin inhibitor-3 {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Probab=10.93 E-value=62 Score=20.77 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=15.7
Q ss_pred HhhCCCCceEEEEccccEEE
Q 041051 27 RKSCPYSKSAKIFYDNCMFK 46 (168)
Q Consensus 27 ~~~Cp~~~~a~i~~d~C~lr 46 (168)
.+-|...-.-..++|+||++
T Consensus 62 PsFCt~~DTtq~yFdgCmVq 81 (147)
T d1f32a_ 62 PPFCGPQDMKMFNFVGCSVL 81 (147)
T ss_dssp CGGGCCTTCEEEEETTEEEE
T ss_pred CCCCCcCcceEEEEeeeEEE
Confidence 35688877777788999997
No 3
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.72 E-value=32 Score=18.59 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=16.0
Q ss_pred hchHHHHHHHHHHHHhhCCC
Q 041051 13 SDCKRCVADAVSTIRKSCPY 32 (168)
Q Consensus 13 ~~C~~Cv~~A~~~~~~~Cp~ 32 (168)
.-|..|+..-+..-...||.
T Consensus 29 ~fc~~Ci~~~~~~~~~~CP~ 48 (65)
T d1g25a_ 29 TLCESCVDLLFVRGAGNCPE 48 (65)
T ss_dssp CEEHHHHHHHHHTTSSSCTT
T ss_pred HhhHHHHHHHhCcCcCCCCC
Confidence 45899999998766667996
No 4
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=10.14 E-value=8.5 Score=18.50 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=15.7
Q ss_pred HhhCCCCceEEEEccccEEE
Q 041051 27 RKSCPYSKSAKIFYDNCMFK 46 (168)
Q Consensus 27 ~~~Cp~~~~a~i~~d~C~lr 46 (168)
..+||.=+.+..|-.+|.-+
T Consensus 2 P~lCPrC~kG~HWa~~Crsk 21 (32)
T d1cl4a_ 2 PGLCPRCKRGKHWANECKSK 21 (32)
T ss_dssp CCSCSSCSSCSSCSTTCCCT
T ss_pred CccCccccCcchHHHHhhhh
Confidence 35799989999998888543
No 5
>d2bida_ f.1.4.1 (A:) Proapoptotic molecule Bid {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.03 E-value=1.1e+02 Score=20.45 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=18.4
Q ss_pred ChhchHHHHHHHHHHHHhhCCCC
Q 041051 11 SASDCKRCVADAVSTIRKSCPYS 33 (168)
Q Consensus 11 ~~~~C~~Cv~~A~~~~~~~Cp~~ 33 (168)
+-.+=+.|+++|...+.+.+|..
T Consensus 121 seEd~r~~LAaale~l~qt~P~d 143 (197)
T d2bida_ 121 SEEDRNRDLATALEQLLQAYPRD 143 (197)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCS
T ss_pred cHHHHHHHHHHHHHHHHHHCCCc
Confidence 34455779999999999999963
No 6
>d1wiga2 g.39.1.3 (A:33-73) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.63 E-value=49 Score=16.50 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=8.6
Q ss_pred cceEEEcCcee
Q 041051 147 QGGRVITASCI 157 (168)
Q Consensus 147 ~g~~v~~~~C~ 157 (168)
+|..||-|.|.
T Consensus 18 QGs~IWHP~C~ 28 (41)
T d1wiga2 18 QGSSIWHPACR 28 (41)
T ss_dssp ETTEEECTTHH
T ss_pred cCCceeCCccc
Confidence 57888888874
No 7
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=8.54 E-value=51 Score=19.65 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhCCC-CceEEEEccccEEE
Q 041051 19 VADAVSTIRKSCPY-SKSAKIFYDNCMFK 46 (168)
Q Consensus 19 v~~A~~~~~~~Cp~-~~~a~i~~d~C~lr 46 (168)
|.+.++.|.+.|-- .++-+++.|+.++-
T Consensus 62 V~qtAA~Ieq~t~vk~kD~R~FlDGIYv~ 90 (93)
T d1vqoe2 62 VGQTAADIEQLTRINDKDVRVFQDGVYIT 90 (93)
T ss_dssp HHHHHHHHHHTTCCSSSCTTTCCCEEEEE
T ss_pred HHHHHHHHHHhhccCCCCccEeecCEEEE
Confidence 56677788888884 57888888888763
No 8
>d1ha9a_ g.3.2.1 (A:) Trypsin inhibitor {Spiny bitter cucumber (Momordica cochinchinensis), MCOTI-II [TaxId: 3674]}
Probab=7.45 E-value=37 Score=15.96 Aligned_cols=7 Identities=57% Similarity=1.227 Sum_probs=5.5
Q ss_pred EEecCCC
Q 041051 116 LAQCTRD 122 (168)
Q Consensus 116 laQC~~D 122 (168)
|-||++|
T Consensus 12 lkkcrrd 18 (34)
T d1ha9a_ 12 LKKCRRD 18 (34)
T ss_dssp CCBCSSG
T ss_pred HHHhccc
Confidence 5688888
No 9
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=7.10 E-value=67 Score=18.43 Aligned_cols=11 Identities=27% Similarity=0.658 Sum_probs=7.8
Q ss_pred hchHHHHHHHH
Q 041051 126 NDCKMCLDRII 136 (168)
Q Consensus 126 ~~C~~CL~~a~ 136 (168)
.-|++||+.=.
T Consensus 39 GFCRNCLskWy 49 (79)
T d2o35a1 39 GFCRNCLSNWY 49 (79)
T ss_dssp SCCHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45999998633
No 10
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=7.05 E-value=81 Score=18.50 Aligned_cols=19 Identities=16% Similarity=0.431 Sum_probs=17.0
Q ss_pred hchHHHHHHHHhhccccCC
Q 041051 126 NDCKMCLDRIIGDLPSCCD 144 (168)
Q Consensus 126 ~~C~~CL~~a~~~~~~~c~ 144 (168)
.-|+.|..--..+-.+.||
T Consensus 44 PvCrpCyEYErkeG~q~Cp 62 (93)
T d1weoa_ 44 PACRPCYEYERREGTQNCP 62 (93)
T ss_dssp CCCHHHHHHHHHTSCSSCT
T ss_pred ccchHHHHHHHhccCccCc
Confidence 5699999999999999998
Done!