BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041054
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 4/101 (3%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN +D G TPLHLAAR+ E V +LL +GA V A G TPLHLAAR G ++
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD----KDGYTPLHLAAREGHLEI 116
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPAS 106
+ LL GAD +D G+ P+ +A++ H A +L A+
Sbjct: 117 VEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN +D G TPLHLAAR+ E V +LL +GA V A G TPLHLAAR G ++
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD----KDGYTPLHLAAREGHLEI 83
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAE 108
+ LL GAD +D G P +A + H +L A A+
Sbjct: 84 VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 20 AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
AAR + + V IL+ +GA V A G TPLHLAAR G ++ + LL GAD +
Sbjct: 9 AARAGQDDEVRILMANGADVNAKD----KDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 80 DVSGRIPYAVALKHKHGACAALLNPASAE 108
D G P +A + H +L A A+
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGAD 93
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN +D G TPLHLAAR E V +LL++GA V A G TPLHLAAR G ++
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD----KNGRTPLHLAARNGHLEV 83
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASA 107
++ LL GAD +D +GR P +A ++ H LL A A
Sbjct: 84 VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 4/96 (4%)
Query: 13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
G TPLHLAAR E V +LL++GA V A G TPLHLAAR G ++ ++ LL
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKD----KNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 73 GADRLHRDVSGRIPYAVALKHKHGACAALLNPASAE 108
GAD +D +GR P +A ++ H LL A A+
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 93
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 58/101 (57%), Gaps = 4/101 (3%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN +D G TPLHLAAR+ E V +LL +GA V A G TPLHLAAR G ++
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD----KDGYTPLHLAAREGHLEI 116
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPAS 106
+ LL GAD +D G+ P+ +A+ + + A +L A+
Sbjct: 117 VEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN +D G TPLHLAAR+ E V +LL +GA V A G TPLHLAAR G ++
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD----KDGYTPLHLAAREGHLEI 83
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAE 108
+ LL GAD +D G P +A + H +L A A+
Sbjct: 84 VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 20 AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
AAR + + V IL+ +GA V A G TPLHLAAR G ++ + LL GAD +
Sbjct: 9 AARAGQDDEVRILMANGADVNAKD----KDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 80 DVSGRIPYAVALKHKHGACAALLNPASAE 108
D G P +A + H +L A A+
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGAD 93
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 62/131 (47%), Gaps = 9/131 (6%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLHLAA E V +LL GA A G TPLHLAA G +
Sbjct: 30 VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD----SDGKTPLHLAAENGHKEV 85
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPS----PLKFISE 121
++ LL+ GAD +D G+ P +A ++ H LL A+P S PL E
Sbjct: 86 VKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLARE 145
Query: 122 L-NQEAKALLE 131
N+E LLE
Sbjct: 146 HGNEEVVKLLE 156
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 20 AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
AA + V LL++GA V AS G TPLHLAA G + ++ LL+ GAD +
Sbjct: 11 AAENGNKDRVKDLLENGADVNASD----SDGKTPLHLAAENGHKEVVKLLLSQGADPNAK 66
Query: 80 DVSGRIPYAVALKHKHGACAALLNPASAEP 109
D G+ P +A ++ H LL A+P
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLLLSQGADP 96
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN +D G TPLHLAAR+ E V +LL +GA V A G TPLHLAAR G ++
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD----KDGYTPLHLAAREGHLEI 95
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAE 108
+ LL GAD +D G P +A + H +L A A+
Sbjct: 96 VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 138
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN +D G TPLHLAAR+ E V +LL +GA V A G TPLHLAAR G ++
Sbjct: 73 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD----KDGYTPLHLAAREGHLEI 128
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
+ LL GAD +D G+ + +++ + + A +L
Sbjct: 129 VEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 20 AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
AAR + + V IL+ +GA V A G TPLHLAAR G ++ + LL GAD +
Sbjct: 21 AARAGQDDEVRILMANGADVNAKD----KDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 76
Query: 80 DVSGRIPYAVALKHKHGACAALLNPASAE 108
D G P +A + H +L A A+
Sbjct: 77 DKDGYTPLHLAAREGHLEIVEVLLKAGAD 105
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 67.0 bits (162), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/95 (44%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
G TPLHLAAR E V +LL++GA V A G TPLHLAAR G ++ ++ LL
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----GRTPLHLAARNGHLEVVKLLLEA 57
Query: 73 GADRLHRDVSGRIPYAVALKHKHGACAALLNPASA 107
GAD +D +GR P +A ++ H LL A A
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 58.2 bits (139), Expect = 5e-09, Method: Composition-based stats.
Identities = 34/69 (49%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN +D G TPLHLAAR E V +LL++GA V A G TPLHLAAR G ++
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----GRTPLHLAARNGHLEV 83
Query: 66 IRELLAWGA 74
++ LL GA
Sbjct: 84 VKLLLEAGA 92
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 50 GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAE 108
G TPLHLAAR G ++ ++ LL GAD +D +GR P +A ++ H LL A A+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN +D G TPLHLAAR+ E V +LL +GA V AS G TPLHLAA+ G ++
Sbjct: 73 VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASD----SHGFTPLHLAAKRGHLEI 128
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
+ LL GAD +D G+ + +++ + + A +L
Sbjct: 129 VEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN RD G TPLHLAA E V +LL +GA V A G TPLHLAAR G ++
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD----SLGVTPLHLAARRGHLEI 95
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKH 95
+ LL GAD D G P +A K H
Sbjct: 96 VEVLLKNGADVNASDSHGFTPLHLAAKRGH 125
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 20 AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
AAR + + V IL+ +GA V A G TPLHLAA G ++ + LL GAD +
Sbjct: 21 AARAGQDDEVRILMANGADVNARD----FTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK 76
Query: 80 DVSGRIPYAVALKHKH 95
D G P +A + H
Sbjct: 77 DSLGVTPLHLAARRGH 92
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 61/131 (46%), Gaps = 9/131 (6%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLH AA++ E V +L+ GA V A G TPLH AA+ G +
Sbjct: 30 VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD----SDGRTPLHYAAKEGHKEI 85
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPS----PLKFISE 121
++ L++ GAD +D GR P A K H LL A+ S PL E
Sbjct: 86 VKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLARE 145
Query: 122 L-NQEAKALLE 131
N+E LLE
Sbjct: 146 HGNEEIVKLLE 156
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 20 AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
AA + V L+++GA V AS G TPLH AA+ G + ++ L++ GAD +
Sbjct: 11 AAENGNKDRVKDLIENGADVNASD----SDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 80 DVSGRIPYAVALKHKHGACAALL 102
D GR P A K H LL
Sbjct: 67 DSDGRTPLHYAAKEGHKEIVKLL 89
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLHLAAR E V +LL +GA V A GSTPLHLAA+ G ++
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNA----LDFSGSTPLHLAAKRGHLEI 95
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKH 95
+ LL +GAD D G P +A H
Sbjct: 96 VEVLLKYGADVNADDTIGSTPLHLAADTGH 125
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G+TPLHLAA++ E V +LL GA V A GSTPLHLAA G ++
Sbjct: 73 VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADD----TIGSTPLHLAADTGHLEI 128
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
+ LL +GAD +D G+ + +++ + + A +L
Sbjct: 129 VEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 20 AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
AAR + + V IL+ +GA V A G TPLHLAAR G ++ + LL GAD
Sbjct: 21 AARAGQDDEVRILMANGADVNAED----TYGDTPLHLAARVGHLEIVEVLLKNGADVNAL 76
Query: 80 DVSGRIPYAVALKHKHGACAALL----NPASAEPLVWPSPLKFISE 121
D SG P +A K H +L +A+ + +PL ++
Sbjct: 77 DFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAAD 122
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 22/40 (55%)
Query: 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCA 41
Y VN D G+TPLHLAA E V +LL GA V A
Sbjct: 102 YGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNA 141
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG 61
Y VN D GATPLHLAA E V +LL GA V A G TPLHLAA G
Sbjct: 69 YGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKD----YEGFTPLHLAAYDG 124
Query: 62 SIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
++ + LL +GAD +D G+ + +++ + + A +L
Sbjct: 125 HLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLHLAA+ E V +LL GA V A + G+TPLHLAA G ++
Sbjct: 40 VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNA----WDNYGATPLHLAADNGHLEI 95
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKH 95
+ LL GAD +D G P +A H
Sbjct: 96 VEVLLKHGADVNAKDYEGFTPLHLAAYDGH 125
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
AAR + + V IL+ +GA V A+ G TPLHLAA+ G ++ + LL +GAD
Sbjct: 21 AARAGQDDEVRILMANGADVNATD----WLGHTPLHLAAKTGHLEIVEVLLKYGADVNAW 76
Query: 80 DVSGRIPYAVALKHKH 95
D G P +A + H
Sbjct: 77 DNYGATPLHLAADNGH 92
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 26/58 (44%)
Query: 57 AARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPS 114
AAR G D +R L+A GAD D G P +A K H +L A+ W +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDN 78
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D +G+TPLHLAA PE V +LL GA V A G TPLHLAA G ++
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD----TDGWTPLHLAADNGHLEI 95
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKH 95
+ LL +GAD +D G P +A H
Sbjct: 96 VEVLLKYGADVNAQDAYGLTPLHLAADRGH 125
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN RD G TPLHLAA E V +LL GA V A YG TPLHLAA G ++
Sbjct: 73 VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDA-YGL---TPLHLAADRGHLEI 128
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
+ LL GAD +D G+ + +++ + + A +L
Sbjct: 129 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 20 AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
AAR + + V IL+ +GA V A + GSTPLHLAA G + + LL GAD R
Sbjct: 21 AARAGQDDEVRILMANGADVNA----HDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 80 DVSGRIPYAVALKHKH 95
D G P +A + H
Sbjct: 77 DTDGWTPLHLAADNGH 92
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 23/41 (56%)
Query: 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCAS 42
Y VN +D G TPLHLAA + E V +LL GA V A
Sbjct: 102 YGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQ 142
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLHLAA E V +LL +GA V AS G TPLHLAA G ++
Sbjct: 40 VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD----LTGITPLHLAAATGHLEI 95
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKH 95
+ LL GAD D G P +A K+ H
Sbjct: 96 VEVLLKHGADVNAYDNDGHTPLHLAAKYGH 125
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLHLAA E V +LL GA V A Y G TPLHLAA+ G ++
Sbjct: 73 VNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNA----YDNDGHTPLHLAAKYGHLEI 128
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
+ LL GAD +D G+ + +++ + + A +L
Sbjct: 129 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG 61
YA VN D G TPLHLAA + E V +LL GA V A G TPLHLAA G
Sbjct: 69 YAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMD----YQGYTPLHLAAEDG 124
Query: 62 SIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
++ + LL +GAD +D G+ + +++ + + A +L
Sbjct: 125 HLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLHL E + +LL A V AS G TPLHLAA G ++
Sbjct: 40 VNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD----KSGWTPLHLAAYRGHLEI 95
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKH 95
+ LL +GAD D G P +A + H
Sbjct: 96 VEVLLKYGADVNAMDYQGYTPLHLAAEDGH 125
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 20 AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
AAR + + V IL+ +GA V A+ G TPLHL G ++ I LL + AD
Sbjct: 21 AARAGQDDEVRILMANGADVNAND----WFGITPLHLVVNNGHLEIIEVLLKYAADVNAS 76
Query: 80 DVSGRIPYAVALKHKH 95
D SG P +A H
Sbjct: 77 DKSGWTPLHLAAYRGH 92
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLHLAA++ E V +LL GA V AS G TPLHLAA G ++
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD----SWGRTPLHLAATVGHLEI 95
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
+ LL +GAD +D G+ + +++ + + A +L
Sbjct: 96 VEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLHLAA++ E V +LL GA V AS G TPLHLAA G ++
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD----IWGRTPLHLAATVGHLEI 95
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
+ LL +GAD +D G+ + +++ + + A +L
Sbjct: 96 VEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 20 AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
A R + + V IL+ +GA V A G TPLHLAA+ G ++ + LL GAD
Sbjct: 21 ATRAGQDDEVRILMANGADVNA----MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 80 DVSGRIPYAVA 90
D+ GR P +A
Sbjct: 77 DIWGRTPLHLA 87
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D +G TPLHLAA E V +LL GA V A + GSTPLHLAA G ++
Sbjct: 40 VNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNA----HDNDGSTPLHLAALFGHLEI 95
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
+ LL GAD +D G+ + +++ + + A +L
Sbjct: 96 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 57 AARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKH 95
AAR G D +R L+A GAD D G P +A + H
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDH 59
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 7 NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
N D G TPLH AA E V +LL GA A G TPLH AA G + +
Sbjct: 31 NASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD----SDGRTPLHYAAENGHKEIV 86
Query: 67 RELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPS----PLKFISEL 122
+ LL+ GAD +D GR P A ++ H LL A+P S PL E
Sbjct: 87 KLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREH 146
Query: 123 -NQEAKALLE 131
N+E LLE
Sbjct: 147 GNEEIVKLLE 156
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 20 AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
AA + V LL++GA AS G TPLH AA G + ++ LL+ GAD +
Sbjct: 11 AAENGNKDRVKDLLENGADPNASD----SDGRTPLHYAAENGHKEIVKLLLSKGADPNAK 66
Query: 80 DVSGRIPYAVALKHKHGACAALLNPASAEPLVWPS----PLKFISE 121
D GR P A ++ H LL A+P S PL + +E
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAE 112
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLHLAA E V +LL +GA V A+ G TPLHLAA G ++
Sbjct: 73 VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATD----TYGFTPLHLAADAGHLEI 128
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
+ LL +GAD +D G+ + +++ + + A +L
Sbjct: 129 VEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLHLAA + E V +LL GA V A+ G TPLHLAA G ++
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD----KMGDTPLHLAALYGHLEI 95
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKH 95
+ LL GAD D G P +A H
Sbjct: 96 VEVLLKNGADVNATDTYGFTPLHLAADAGH 125
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 20 AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
AAR + + V IL+ +GA V A G TPLHLAA G ++ + LL GAD
Sbjct: 21 AARAGQDDEVRILMANGADVNAED----DSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 80 DVSGRIPYAVALKHKH 95
D G P +A + H
Sbjct: 77 DKMGDTPLHLAALYGH 92
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLHLAA E V +LL GA V A+ G TPLHLAA G ++
Sbjct: 40 VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD----VYGFTPLHLAAMTGHLEI 95
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKH 95
+ LL +GAD D++G P +A H
Sbjct: 96 VEVLLKYGADVNAFDMTGSTPLHLAADEGH 125
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
V+ D G TPLHLAA E V +LL GA V A + GSTPLHLAA G ++
Sbjct: 73 VDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNA----FDMTGSTPLHLAADEGHLEI 128
Query: 66 IRELLAWGADRLHRDVSGRIPYAVAL 91
+ LL +GAD +D G+ + +++
Sbjct: 129 VEVLLKYGADVNAQDKFGKTAFDISI 154
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 23/40 (57%)
Query: 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCA 41
Y VN D G+TPLHLAA + E V +LL GA V A
Sbjct: 102 YGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNA 141
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLHLAA++ E V +LL GA V A G TPLHLAA G ++
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD----IWGRTPLHLAATVGHLEI 95
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
+ LL +GAD +D G+ + +++ + + A +L
Sbjct: 96 VEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 20 AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
A R + + V IL+ +GA V A G TPLHLAA+ G ++ + LL GAD R
Sbjct: 21 ATRAGQDDEVRILMANGADVNA----MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR 76
Query: 80 DVSGRIPYAVA 90
D+ GR P +A
Sbjct: 77 DIWGRTPLHLA 87
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLHLAA E V +LL +GA V A Y GSTPLHLAA G ++
Sbjct: 40 VNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNA----YDTLGSTPLHLAAHFGHLEI 95
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKH 95
+ LL GAD +D +G P +A H
Sbjct: 96 VEVLLKNGADVNAKDDNGITPLHLAANRGH 125
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G+TPLHLAA E V +LL +GA V A G TPLHLAA G ++
Sbjct: 73 VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDN----GITPLHLAANRGHLEI 128
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
+ LL +GAD +D G+ + +++ + + A +L
Sbjct: 129 VEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 59/131 (45%), Gaps = 9/131 (6%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLH AA E V +L+ GA V A G TPLH AA G +
Sbjct: 30 VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD----SDGRTPLHHAAENGHKEV 85
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPS----PLKFISE 121
++ L++ GAD +D GR P A ++ H LL A+ S PL E
Sbjct: 86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLARE 145
Query: 122 L-NQEAKALLE 131
N+E LLE
Sbjct: 146 HGNEEVVKLLE 156
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 20 AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
AA + V L+++GA V AS G TPLH AA G + ++ L++ GAD +
Sbjct: 11 AAENGNKDRVKDLIENGADVNASD----SDGRTPLHHAAENGHKEVVKLLISKGADVNAK 66
Query: 80 DVSGRIPYAVALKHKHGACAALL 102
D GR P A ++ H LL
Sbjct: 67 DSDGRTPLHHAAENGHKEVVKLL 89
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLHLAA + E V +LL +GA V AS G TPLHLAA G ++
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD----SAGITPLHLAAYDGHLEI 87
Query: 66 IRELLAWGADRLHRDVSGRIPYAVA 90
+ LL GAD D +G P +A
Sbjct: 88 VEVLLKHGADVNAYDRAGWTPLHLA 112
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLHLAA E V +LL GA V A Y G TPLHLAA G ++
Sbjct: 65 VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNA----YDRAGWTPLHLAALSGQLEI 120
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
+ LL GAD +D G + +++ A +L
Sbjct: 121 VEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 20 AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
AA + + V IL+ +GA V A+ G TPLHLAA G ++ + LL GAD
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDN----GLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 80 DVSGRIPYAVALKHKH 95
D +G P +A H
Sbjct: 69 DSAGITPLHLAAYDGH 84
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLHLAA E V +LL GA V AS G TPLHLAA G ++
Sbjct: 40 VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD----VFGYTPLHLAAYWGHLEI 95
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALK 92
+ LL GAD D G P +A K
Sbjct: 96 VEVLLKNGADVNAMDSDGMTPLHLAAK 122
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
V+ D G TPLHLAA E V +LL +GA V A G TPLHLAA+ G ++
Sbjct: 73 VDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMD----SDGMTPLHLAAKWGYLEI 128
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
+ LL GAD +D G+ + +++ + + A +L
Sbjct: 129 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 20 AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
AAR + + V IL+ +GA V A+ G+TPLHLAA G ++ + LL GAD
Sbjct: 21 AARAGQDDEVRILMANGADVNAADN----TGTTPLHLAAYSGHLEIVEVLLKHGADVDAS 76
Query: 80 DVSGRIPYAVALKHKH 95
DV G P +A H
Sbjct: 77 DVFGYTPLHLAAYWGH 92
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLHLAA + E V +LL +GA V A+ G TPLHLAA G ++
Sbjct: 73 VNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNAND----HNGFTPLHLAANIGHLEI 128
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
+ LL GAD +D G+ + +++ + + A +L
Sbjct: 129 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLHLAA E V +LL +GA V A G TPLHLAA G ++
Sbjct: 40 VNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD----SLGVTPLHLAADRGHLEV 95
Query: 66 IRELLAWGADRLHRDVSGRIPYAVA 90
+ LL GAD D +G P +A
Sbjct: 96 VEVLLKNGADVNANDHNGFTPLHLA 120
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 20 AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
AAR + + V IL+ +GA V AS G TPLHLAA G ++ + LL GAD
Sbjct: 21 AARAGQDDEVRILMANGADVNASD----HVGWTPLHLAAYFGHLEIVEVLLKNGADVNAD 76
Query: 80 DVSGRIPYAVALKHKH 95
D G P +A H
Sbjct: 77 DSLGVTPLHLAADRGH 92
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLHLAA E V +LL +GA V A G TPLHL A G ++
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNA----IDAIGETPLHLVAMYGHLEI 95
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
+ LL GAD +D G+ + +++ + + A +L
Sbjct: 96 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
G TPLH AA+ E V LL GA V A + G+TPLHLAA+ G + ++ LLA
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARS----KDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 73 GADRLHRDVSGRIPYAVALKHKHGACAALLNPASAE 108
GAD R G P +A K+ H LL+ A+
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN R G TPLHLAA+ E V +LL GA V A + G+TP HLA + G +
Sbjct: 35 VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS----KDGNTPEHLAKKNGHHEI 90
Query: 66 IRELLAWGAD 75
++ L A GAD
Sbjct: 91 VKLLDAKGAD 100
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLHLAA E V +LL +GA V A+ G G TPLHLAA ++
Sbjct: 40 VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNAT----GNTGRTPLHLAAWADHLEI 95
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
+ LL GAD +D G+ + +++ + + A +L
Sbjct: 96 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 7 NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
N D G TPLH+AA E V +LL +GA V A G+TPLHLAA G ++ +
Sbjct: 29 NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD----TNGTTPLHLAASLGHLEIV 84
Query: 67 RELLAWGADRLHRDVSGRIPYAVA 90
LL +GAD +D +G P +A
Sbjct: 85 EVLLKYGADVNAKDATGITPLYLA 108
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLHLAA E V +LL GA V A G TPL+LAA G ++
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKD----ATGITPLYLAAYWGHLEI 116
Query: 66 IRELLAWGADRLHRDVSGRIPYAVAL 91
+ LL GAD +D G+ + +++
Sbjct: 117 VEVLLKHGADVNAQDKFGKTAFDISI 142
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 20 AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
AAR + + V IL+ +GA Y G TPLH+AA G ++ + LL GAD
Sbjct: 9 AARAGQDDEVRILMANGA----DANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV 64
Query: 80 DVSGRIPYAVALKHKH 95
D +G P +A H
Sbjct: 65 DTNGTTPLHLAASLGH 80
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 22/41 (53%)
Query: 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCAS 42
Y VN +D G TPL+LAA E V +LL GA V A
Sbjct: 90 YGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQ 130
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLHLAA E V +LL GA V A GSTPLHLAA G ++
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNA----IDIXGSTPLHLAALIGHLEI 95
Query: 66 IRELLAWGADRLHRDVSGRIPYAVA 90
+ LL GAD D G P +A
Sbjct: 96 VEVLLKHGADVNAVDTWGDTPLHLA 120
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G+TPLHLAA E V +LL GA V A G TPLHLAA G ++
Sbjct: 73 VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNA----VDTWGDTPLHLAAIMGHLEI 128
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
+ LL GAD +D G+ + +++ + + A +L
Sbjct: 129 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 20 AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
AAR + + V IL+ +GA V A+ G TPLHLAA G ++ + LL GAD
Sbjct: 21 AARAGQDDEVRILMANGADVNATD----ASGLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 80 DVSGRIPYAVA 90
D+ G P +A
Sbjct: 77 DIXGSTPLHLA 87
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
Query: 57 AARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKH----------KHGACAALLNPAS 106
AAR G D +R L+A GAD D SG P +A + KHGA ++
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 107 AEPL 110
+ PL
Sbjct: 81 STPL 84
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLHLAA E V +LL GA V A GSTPLHLAA G ++
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNA----IDIMGSTPLHLAALIGHLEI 95
Query: 66 IRELLAWGADRLHRDVSGRIPYAVA 90
+ LL GAD D G P +A
Sbjct: 96 VEVLLKHGADVNAVDTWGDTPLHLA 120
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G+TPLHLAA E V +LL GA V A G TPLHLAA G ++
Sbjct: 73 VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNA----VDTWGDTPLHLAAIMGHLEI 128
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
+ LL GAD +D G+ + +++ + + A +L
Sbjct: 129 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 20 AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
AAR + + V IL+ +GA V A+ G TPLHLAA G ++ + LL GAD
Sbjct: 21 AARAGQDDEVRILMANGADVNATD----ASGLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 80 DVSGRIPYAVA 90
D+ G P +A
Sbjct: 77 DIMGSTPLHLA 87
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 57 AARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKH 95
AAR G D +R L+A GAD D SG P +A + H
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGH 59
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLHLAA+ E V +LL GA V A G TPLHLAA G ++
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDN----FGITPLHLAAIRGHLEI 95
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
+ LL GAD +D G+ + +++ + + A +L
Sbjct: 96 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 20 AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
AAR + + V IL+ +GA V A G TPLHLAA+ G ++ + LL +GAD
Sbjct: 21 AARAGQDDEVRILMANGADVNA----LDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE 76
Query: 80 DVSGRIPYAVA 90
D G P +A
Sbjct: 77 DNFGITPLHLA 87
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 22/41 (53%)
Query: 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCAS 42
Y VN D G TPLHLAA + E V +LL GA V A
Sbjct: 69 YGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQ 109
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPLHLAA E V +LL +GA V A G TPL LAA G ++
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA----VDHAGMTPLRLAALFGHLEI 95
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKH 95
+ LL GAD D+ G P +A H
Sbjct: 96 VEVLLKNGADVNANDMEGHTPLHLAAMFGH 125
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G TPL LAA E V +LL +GA V A+ G TPLHLAA G ++
Sbjct: 73 VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND----MEGHTPLHLAAMFGHLEI 128
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
+ LL GAD +D G+ + +++ + + A +L
Sbjct: 129 VEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 57 AARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKH 95
AAR G D +R L+A GAD D SG P +A + H
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGH 59
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN +D G TPL+LA E V +LL +GA V A G TPLHLAA G ++
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD----AIGFTPLHLAAFIGHLEI 95
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
LL GAD +D G+ + +++ + + A +L
Sbjct: 96 AEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 57 AARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKH 95
AAR G D +R L+A GAD +D G P +A H H
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGH 59
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 7 NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
N++D G TPLH A + V +LL ALV +T GY +PLH AA+ G +D +
Sbjct: 37 NVKDHAGWTPLHEACNHGHLKVVELLLQHKALV--NTTGY--QNDSPLHDAAKNGHVDIV 92
Query: 67 RELLAWGADRLHRDVSGRIP 86
+ LL++GA R ++ G P
Sbjct: 93 KLLLSYGASRNAVNIFGLRP 112
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 50 GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
G T LH+A+ G I + LL G+D +D +G P A H H LL
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELL 62
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN+ G++PLH+AA R + + +LL GA + G + PLHLA + G
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGA----NAGARNADQAVPLHLACQQGHFQV 134
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
++ LL A +D+SG P A H ALL
Sbjct: 135 VKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALL 171
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 44/105 (41%), Gaps = 14/105 (13%)
Query: 9 RDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRE 68
R+ A PLHLA +Q + V LLDS A G+TPL A GG + +
Sbjct: 115 RNADQAVPLHLACQQGHFQVVKCLLDSNA----KPNKKDLSGNTPLIYACSGGHHELVAL 170
Query: 69 LLAWGAD----------RLHRDVSGRIPYAVALKHKHGACAALLN 103
LL GA LH V + + V L HGA +LN
Sbjct: 171 LLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLN 215
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 50 GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEP 109
GS+PLH+AA G D I LL GA+ R+ +P +A + H L ++A+P
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP 145
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 20 AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
AAR + + V IL+ +GA V A GSTPLHLAAR G ++ ++ LL GAD +
Sbjct: 31 AARAGQDDEVRILMANGADVAAKD----KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 80 DVSGRIPYAVALKHKHGACAALL 102
D G+ + +++ + + A +L
Sbjct: 87 DKFGKTAFDISIDNGNEDLAEIL 109
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCA 41
V +D G+TPLHLAAR E V +LL++GA V A
Sbjct: 50 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA 85
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 57 AARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAE 108
AAR G D +R L+A GAD +D +G P +A ++ H LL A A+
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 7 NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
N+ + G TPLHL A++ +L+ G +V A+T G TPLH+A+ G+I +
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT----RMGYTPLHVASHYGNIKLV 327
Query: 67 RELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEP 109
+ LL AD + G P A + H LL A P
Sbjct: 328 KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP 370
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
G TPLH+A + V +LL G S G TPLH+AA+ ++ R LL +
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGG----SPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 234
Query: 73 GADRLHRDVSGRIPYAVALKHKHGACAALL 102
G V G P +A + H ALL
Sbjct: 235 GGSANAESVQGVTPLHLAAQEGHAEMVALL 264
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 61/132 (46%), Gaps = 12/132 (9%)
Query: 7 NIRDGRGATPLHLAARQRRPECVHILLDSGA-LVCASTGGYGCPGSTPLHLAARGGSIDC 65
N+ G TPLH+AAR+ E V LL+ A C + G+ TPLH+AA+ G +
Sbjct: 107 NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGF-----TPLHVAAKYGKVRV 161
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPL--VWP--SPLKFISE 121
LL A +G P VA+ H + LL P P W +PL ++
Sbjct: 162 AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAK 221
Query: 122 LNQ--EAKALLE 131
NQ A++LL+
Sbjct: 222 QNQVEVARSLLQ 233
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
G TPLH+AA+Q + E LL G S G TPLHLAA+ G + + LL+
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGG----SANAESVQGVTPLHLAAQEGHAEMVALLLSK 267
Query: 73 GADRLHRDVSGRIPYAVALKHKHGACAALL 102
A+ + SG P + + H A +L
Sbjct: 268 QANGNLGNKSGLTPLHLVAQEGHVPVADVL 297
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN + TPLH AAR V +LL++ A +T G TPLH+AAR G ++
Sbjct: 73 VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT----TAGHTPLHIAAREGHVET 128
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEP 109
+ LL A + G P VA K+ A LL A P
Sbjct: 129 VLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP 172
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 7 NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
N+ + + TPLH+AAR E LL + A V A TPLH AAR G + +
Sbjct: 41 NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK----AKDDQTPLHCAARIGHTNMV 96
Query: 67 RELLAWGADRLHRDVSGRIPYAVALKHKH 95
+ LL A+ +G P +A + H
Sbjct: 97 KLLLENNANPNLATTAGHTPLHIAAREGH 125
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGC-PGSTPLHLAARG 60
Y N +G TPLHLAA++ E V +LL A G G G TPLHL A+
Sbjct: 234 YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQA-----NGNLGNKSGLTPLHLVAQE 288
Query: 61 GSIDCIRELLAWGADRLHRDVSGRIPY 87
G + L+ G + D + R+ Y
Sbjct: 289 GHVPVADVLIKHG---VMVDATTRMGY 312
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
G TPLH+A+ + V LL A V A T G +PLH AA+ G D + LL
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTK----LGYSPLHQAAQQGHTDIVTLLLKN 366
Query: 73 GADRLHRDVSGRIPYAVA 90
GA G P A+A
Sbjct: 367 GASPNEVSSDGTTPLAIA 384
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN + G +PLH AA+Q + V +LL +G AS G+TPL +A R G I
Sbjct: 337 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG----ASPNEVSSDGTTPLAIAKRLGYISV 392
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 15 TPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELL 70
TPLH+A+ V LL GA S TPLH+AAR G + + LL
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGA----SPNVSNVKVETPLHMAARAGHTEVAKYLL 67
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 49/121 (40%), Gaps = 31/121 (25%)
Query: 5 FVNIRDGRGATPLHLAARQRRPECVHILLDSGA------------LVCASTGGY------ 46
VN D RG TPL A+ E V LL+ GA L ASTGGY
Sbjct: 28 LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGL 87
Query: 47 -----------GCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPY--AVALKH 93
G TPL A RG + C+ LLA GAD SG P AVAL +
Sbjct: 88 LLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGY 147
Query: 94 K 94
+
Sbjct: 148 R 148
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 7 NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
N++D G +P+H AAR + + +L++ GA V A GS P+HLA R G +
Sbjct: 68 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNA----LDSTGSLPIHLAIREGHSSVV 123
Query: 67 RELLAWGADRLHRDVSGRIPYAVA 90
LA +D HRD SG P +A
Sbjct: 124 -SFLAPESDLHHRDASGLTPLELA 146
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 50 GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPAS 106
G++P+H AAR G +D ++ L+ GAD D +G +P +A++ H + + L P S
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPES 130
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 7 NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
N++D G +P+H AAR + + +L++ GA V A GS P+HLA R G +
Sbjct: 70 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNA----LDSTGSLPIHLAIREGHSSVV 125
Query: 67 RELLAWGADRLHRDVSGRIPYAVA 90
LA +D HRD SG P +A
Sbjct: 126 -SFLAPESDLHHRDASGLTPLELA 148
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 50 GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPAS 106
G++P+H AAR G +D ++ L+ GAD D +G +P +A++ H + + L P S
Sbjct: 76 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPES 132
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 20 AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
AAR + + V IL+ +GA V A GSTPLHLAAR G ++ ++ LL GAD +
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKN----GSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 80 DVSGRIPYAVALKHKHGACAALL 102
D G+ + +++ + + A +L
Sbjct: 69 DKFGKTAFDISIDNGNEDLAEIL 91
Score = 37.0 bits (84), Expect = 0.013, Method: Composition-based stats.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCA 41
V +D G+TPLHLAAR E V +LL++GA V A
Sbjct: 32 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNA 67
Score = 34.3 bits (77), Expect = 0.093, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 57 AARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAE 108
AAR G D +R L+A GAD +D +G P +A ++ H LL A A+
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
+N D G +PLH A R+ R V +L+ GA + G TPLHLAA G D
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG----DDTPLHLAASHGHRDI 87
Query: 66 IRELLAWGADRLHRDVSGRIPYAVA 90
+++LL + AD + G +P A
Sbjct: 88 VQKLLQYKADINAVNEHGNVPLHYA 112
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
+N+ + TPLHLAA + V LL A + A G+ PLH A G
Sbjct: 65 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE----HGNVPLHYACFWGQDQV 120
Query: 66 IRELLAWGA 74
+L+A GA
Sbjct: 121 AEDLVANGA 129
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
+N D G +PLH A R+ R V +L+ GA + G TPLHLAA G D
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG----DDTPLHLAASHGHRDI 82
Query: 66 IRELLAWGADRLHRDVSGRIPYAVA 90
+++LL + AD + G +P A
Sbjct: 83 VQKLLQYKADINAVNEHGNVPLHYA 107
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
+N+ + TPLHLAA + V LL A + A G+ PLH A G
Sbjct: 60 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE----HGNVPLHYACFWGQDQV 115
Query: 66 IRELLAWGA 74
+L+A GA
Sbjct: 116 AEDLVANGA 124
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 48/121 (39%), Gaps = 31/121 (25%)
Query: 5 FVNIRDGRGATPLHLAARQRRPECVHILLDSGA------------LVCASTGGY------ 46
VN D RG TPL A+ E V LL+ GA L ASTGGY
Sbjct: 28 LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGL 87
Query: 47 -----------GCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPY--AVALKH 93
G TPL A G + C+ LLA GAD SG P AVAL +
Sbjct: 88 LLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGY 147
Query: 94 K 94
+
Sbjct: 148 R 148
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 20 AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
AAR + + V IL+ +GA V A G TPLHLAAR G ++ + LL GAD +
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKD----GYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 80 DVSGRIPYAVALKHKHGACAALLNPAS 106
D G+ + +++ + + A +L A+
Sbjct: 65 DKFGKTAFDISIDNGNEDLAEILQKAA 91
Score = 38.9 bits (89), Expect = 0.003, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCA 41
VN +D G TPLHLAAR+ E V +LL +GA V A
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 63
Score = 31.2 bits (69), Expect = 0.77, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 57 AARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAE 108
AAR G D +R L+A GAD +D G P +A + H +L A A+
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN +D G TPL + E + LL+ GA + G TPL +A++ G +
Sbjct: 94 VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA----NVNDRNLEGETPLIVASKYGRSEI 149
Query: 66 IRELLAWGADRLHRDVSG 83
+++LL GAD RD++G
Sbjct: 150 VKKLLELGADISARDLTG 167
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
+N D G T LH AA E V+ILL + A+ TPL LAAR GS +
Sbjct: 144 INAADNSGKTALHWAAAVNNTEAVNILL----MHHANRDAQDDKDETPLFLAAREGSYEA 199
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLN 103
+ LL A+R D R+P VA + H LL+
Sbjct: 200 SKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLD 237
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 14/141 (9%)
Query: 7 NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
N +D G TPLH A ILL + A + G+TPL LAAR +
Sbjct: 78 NSQDNTGRTPLHAAVAADAMGVFQILLRNRA---TNLNARMHDGTTPLILAARLAIEGMV 134
Query: 67 RELLAWGADRLHRDVSGR--IPYAVALKHKHGACAALLNPAS--AEPLVWPSPLKFIS-- 120
+L+ AD D SG+ + +A A+ + L++ A+ A+ +PL F++
Sbjct: 135 EDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPL-FLAAR 193
Query: 121 ELNQEA-KALLENALMEANKE 140
E + EA KALL+N AN+E
Sbjct: 194 EGSYEASKALLDNF---ANRE 211
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGS 62
A +N R G TPL LAAR V L+ + A + A+ G T LH AA +
Sbjct: 108 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADN----SGKTALHWAAAVNN 163
Query: 63 IDCIRELLAWGADRLHRDVSGRIPYAVALKH-KHGACAALLN 103
+ + LL A+R +D P +A + + A ALL+
Sbjct: 164 TEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLD 205
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 10 DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIREL 69
DGR +TPLHLAA R V +LL GA V A G G PLH A G + L
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG----GLVPLHNACSYGHYEVTELL 110
Query: 70 LAWGA 74
L GA
Sbjct: 111 LKHGA 115
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN ++ TPLH+AA + + + +L GA + A G T LH AA G +
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA----LDSLGQTALHRAALAGHLQT 295
Query: 66 IRELLAWGAD 75
R LL++G+D
Sbjct: 296 CRLLLSYGSD 305
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
G TPLH+A + E V +L D+GA + C G TPLHLA + + LL
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT--C-GRTPLHLAVEAQAASVLELLLKA 214
Query: 73 GADRLHRDVSGRIPYAVALKHKHGACAALL 102
GAD R GR P AL + A LL
Sbjct: 215 GADPTARMYGGRTPLGSALLRPNPILARLL 244
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAAR 59
++++++ G T LHLAA V L +GA V + G G T LHLA R
Sbjct: 36 EYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERG----GHTALHLACR 87
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
G TPLH+A + E V +L D+GA + C G TPLHLA + + LL
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT--C-GRTPLHLAVEAQAASVLELLLKA 214
Query: 73 GADRLHRDVSGRIPYAVALKHKHGACAALL 102
GAD R GR P AL + A LL
Sbjct: 215 GADPTARMYGGRTPLGSALLRPNPILARLL 244
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAAR 59
++++++ G T LHLAA V L +GA V + G G T LHLA R
Sbjct: 36 EYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERG----GHTALHLACR 87
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 5 FVNIRDGRGATPLHLAARQRRPECVHILLDSGAL--VCASTGGYGCPGSTPLHLAARGGS 62
V+ +D G+T LHLAA++ E V LL +G + C GG+ TP+ A
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGW-----TPMIWATEYKH 123
Query: 63 IDCIRELLAWGADRLHRD 80
+D ++ LL+ G+D RD
Sbjct: 124 VDLVKLLLSKGSDINIRD 141
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
+NIRD LH AA + ILL A C G +PLH+AAR DC
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILL---AAKC-DLHAVNIHGDSPLHIAARENRYDC 192
Query: 66 IRELLAWGADRLHRDVSGRIP 86
+ L+ +D ++ G P
Sbjct: 193 VVLFLSRDSDVTLKNKEGETP 213
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 30/118 (25%)
Query: 15 TPLHLAARQRRPECVHILLDSGALVCASTGGYGCP------------------------- 49
+PLH AA + H+L+ +GA + + P
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 50 ----GSTPLHLAARGGSIDCIRELLAWGADRLH-RDVSGRIPYAVALKHKHGACAALL 102
GST LHLAA+ G + ++ LL+ G ++ +D G P A ++KH LL
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 65/144 (45%), Gaps = 14/144 (9%)
Query: 6 VNIRD--GRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSI 63
VN RD GR +TPLH AA R V LL GA V A G G PLH A G
Sbjct: 37 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG----GLVPLHNACSYGHY 92
Query: 64 DCIRELLAWGADRLHRDVSGRIP-YAVALKHKHGACAALLNPASAEPLV----WPSPLKF 118
+ L+ GA D+ P + A K K+ C LL A+P +PL
Sbjct: 93 EVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDL 151
Query: 119 ISELNQEAKALL--ENALMEANKE 140
+ + + + + LL + AL++A K+
Sbjct: 152 VKDGDTDIQDLLRGDAALLDAAKK 175
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 10 DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIREL 69
D G +PLHLAA+ +LL +G A T TPLH+AA G + + L
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK----VDRTPLHMAASEGHANIVEVL 86
Query: 70 LAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
L GAD +D+ A +H H LL
Sbjct: 87 LKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 10 DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIREL 69
D T LH AA R + V + GA+V G STPLH A R G + + +L
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLN---STPLHWATRQGHLSMVVQL 95
Query: 70 LAWGAD 75
+ +GAD
Sbjct: 96 MKYGAD 101
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 14 ATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWG 73
+TPLH A RQ V L+ GA + G GC + +HLAA+ G + L+A G
Sbjct: 77 STPLHWATRQGHLSMVVQLMKYGA-DPSLIDGEGC---SCIHLAAQFGHTSIVAYLIAKG 132
Query: 74 ADRLHRDVSGRIPYAVALKHKH 95
D D +G P A H
Sbjct: 133 QDVDMMDQNGMTPLMWAAYRTH 154
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 7 NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
N++D G +P+H AAR + + +L++ GA V G G+ P+HLA + G +
Sbjct: 68 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG----TGALPIHLAVQEGHTAVV 123
Query: 67 RELLAWGADRLHRDVSGRIPYAVALK 92
LA +D RD G P +AL+
Sbjct: 124 -SFLAAESDLHRRDARGLTPLELALQ 148
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 50 GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPAS 106
G++P+H AAR G +D ++ L+ GAD D +G +P +A++ H A + L S
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES 130
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN+ DG GA P+HLA ++ V L L G TPL LA + G+ D
Sbjct: 100 VNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGL-----TPLELALQRGAQDL 154
Query: 66 I 66
+
Sbjct: 155 V 155
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 7 NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
N++D G +P+H AAR + + +L++ GA V G G+ P+HLA + G +
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG----TGALPIHLAVQEGHTAVV 117
Query: 67 RELLAWGADRLHRDVSGRIPYAVALK 92
LA +D RD G P +AL+
Sbjct: 118 -SFLAAESDLHRRDARGLTPLELALQ 142
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 48 CPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPAS 106
G++P+H AAR G +D ++ L+ GAD D +G +P +A++ H A + L S
Sbjct: 66 TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES 124
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN+ DG GA P+HLA ++ V L L G TPL LA + G+ D
Sbjct: 94 VNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRD-----ARGLTPLELALQRGAQDL 148
Query: 66 I 66
+
Sbjct: 149 V 149
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 56/136 (41%), Gaps = 30/136 (22%)
Query: 1 GYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCP-------GS-- 51
G+A VNI +PLH A CV ILL GA V T + P GS
Sbjct: 26 GWA--VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWD 83
Query: 52 -------------------TPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALK 92
+P+H AAR G ++C+ L+A+G + H+ P +A +
Sbjct: 84 CVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACE 143
Query: 93 HKHGACAALLNPASAE 108
++ AC L + A+
Sbjct: 144 NQQRACVKKLLESGAD 159
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG 61
Y ++ + TPL+LA ++ CV LL+SGA V G +PLH AR
Sbjct: 123 YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKG-----QDSPLHAVARTA 177
Query: 62 SIDCIRELLAWGADRLHRDVSGRIPYAVA 90
S + L+ +GAD ++ G+ P +
Sbjct: 178 SEELACLLMDFGADTQAKNAEGKRPVELV 206
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 15 TPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGA 74
+P+H AA + L+ G V T + +PLH A GG + C++ LL GA
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADH----VSPLHEACLGGHLSCVKILLKHGA 60
Query: 75 D 75
Sbjct: 61 Q 61
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
+N D G TPL AA + V LL +GA G + L LA G D
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA----DPQLLGKGRESALSLACSKGYTDI 100
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLV 111
++ LL G D D +G P A+ H C +L + A+P +
Sbjct: 101 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 146
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
+N D G TPL AA + V LL +GA G + L LA G D
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA----DPQLLGKGRESALSLACSKGYTDI 82
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLV 111
++ LL G D D +G P A+ H C +L + A+P +
Sbjct: 83 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 128
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
+N D G TPL AA + V LL +GA G + L LA G D
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA----DPQLLGKGRESALSLACSKGYTDI 84
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLV 111
++ LL G D D +G P A+ H C +L + A+P +
Sbjct: 85 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 130
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 63/157 (40%), Gaps = 27/157 (17%)
Query: 8 IRDGRGATPLHLAARQRRPECVHILLDS-------GALVCASTGGYGCPGSTPLHLAARG 60
+RD RG TPLHLA Q V +L S L + G+ C LHLA+
Sbjct: 73 LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC-----LHLASIH 127
Query: 61 GSIDCIRELLAWGAD-----------RLHRDVSGRIPYAVALKHKHGACAALLNPASAEP 109
G + + L++ GAD LH V + P V+L K GA + P
Sbjct: 128 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187
Query: 110 --LVWPSPLKFISELNQEAKALLENALMEANKEREKN 144
L W P I + Q + LEN M E E++
Sbjct: 188 YQLTWGRPSTRIQQ--QLGQLTLENLQMLPESEDEES 222
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN +D G +PLH+AA R E V LL GA V A GC TPLH AA +
Sbjct: 66 VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN-GC---TPLHYAASKNRHEI 121
Query: 66 IRELLAWGAD 75
LL GA+
Sbjct: 122 AVMLLEGGAN 131
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 9 RDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRE 68
+D AT +H AA + + +HILL AST G+TPLHLA ++ +
Sbjct: 135 KDHYEATAMHRAAAKGNLKMIHILL----YYKASTNIQDTEGNTPLHLACDEERVEEAKL 190
Query: 69 LLAWGADRLHRDVSGRIPYAVA 90
L++ GA + + P VA
Sbjct: 191 LVSQGASIYIENKEEKTPLQVA 212
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARG 60
Y NI+D G TPLHLA + R E +L+ GA + TPL +A G
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENK----EEKTPLQVAKGG 215
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 10 DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIREL 69
D T LH A E V LL G V G +PLH+AA G + ++ L
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA----GWSPLHIAASAGRDEIVKAL 92
Query: 70 LAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEP 109
L GA + +G P A A +L A P
Sbjct: 93 LGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 6 VNIRD--GRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSI 63
VN RD GR +TPLH AA R V LL GA V A G G PLH A G
Sbjct: 33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG----GLVPLHNACSYGHY 88
Query: 64 DCIRELLAWGADRLHRDVSGRIP-YAVALKHKHGACAALLNPASAEPLV----WPSPLKF 118
+ L+ GA D+ P + A K K+ C LL A+P +PL
Sbjct: 89 EVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDL 147
Query: 119 ISELNQEAKALL 130
+ + + + + LL
Sbjct: 148 VKDGDTDIQDLL 159
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 6 VNIRD--GRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSI 63
VN RD GR +TPLH AA R V LL GA V A G G PLH A G
Sbjct: 35 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG----GLVPLHNACSYGHY 90
Query: 64 DCIRELLAWGADRLHRDVSGRIP-YAVALKHKHGACAALLNPASAEPLV----WPSPLKF 118
+ L+ GA D+ P + A K K+ C LL A+P +PL
Sbjct: 91 EVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDL 149
Query: 119 ISELNQEAKALL 130
+ + + + + LL
Sbjct: 150 VKDGDTDIQDLL 161
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN +D G +PLH+AA R E V LL GA V A GC TPLH AA +
Sbjct: 67 VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN-GC---TPLHYAASKNRHEI 122
Query: 66 IRELLAWGAD 75
LL GA+
Sbjct: 123 AVMLLEGGAN 132
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 9 RDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRE 68
+D AT +H AA + + +HILL AST G+TPLHLA ++ +
Sbjct: 136 KDHYEATAMHRAAAKGNLKMIHILL----YYKASTNIQDTEGNTPLHLACDEERVEEAKL 191
Query: 69 LLAWGADRLHRDVSGRIPYAVA 90
L++ GA + + P VA
Sbjct: 192 LVSQGASIYIENKEEKTPLQVA 213
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARG 60
Y NI+D G TPLHLA + R E +L+ GA + TPL +A G
Sbjct: 162 YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENK----EEKTPLQVAKGG 216
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Query: 15 TPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGA 74
T LH A E V LL G V G +PLH+AA G + ++ LL GA
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDDA----GWSPLHIAASAGRDEIVKALLGKGA 98
Query: 75 DRLHRDVSGRIPYAVALKHKHGACAALLNPASAEP 109
+ +G P A A +L A P
Sbjct: 99 QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 133
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 53/131 (40%), Gaps = 28/131 (21%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCP-------GS------- 51
VNI +PLH A CV ILL GA V T + P GS
Sbjct: 85 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 144
Query: 52 --------------TPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGA 97
+P+H AAR G ++C+ L+A+G + H+ P +A +++ A
Sbjct: 145 LQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRA 204
Query: 98 CAALLNPASAE 108
C L + A+
Sbjct: 205 CVKKLLESGAD 215
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG 61
Y ++ + TPL+LA ++ CV LL+SGA V G +PLH R
Sbjct: 179 YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKG-----QDSPLHAVVRTA 233
Query: 62 SIDCIRELLAWGADRLHRDVSGRIP 86
S + L+ +GAD ++ G+ P
Sbjct: 234 SEELACLLMDFGADTQAKNAEGKRP 258
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN +D G +PLH+AA R E V LL GA V A GC TPLH AA +
Sbjct: 66 VNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQN-GC---TPLHYAASKNRHEI 121
Query: 66 IRELLAWGAD 75
LL GA+
Sbjct: 122 AVMLLEGGAN 131
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 9 RDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRE 68
+D AT +H AA + + VHILL AST G+TPLHLA ++ +
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILL----FYKASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 69 LLAWGADRLHRDVSGRIPYAVA 90
L+ GA + + P VA
Sbjct: 191 LVTQGASIYIENKEEKTPLQVA 212
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG 61
Y NI+D G TPLHLA + R E L+ GA + TPL +A G
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENK----EEKTPLQVAK--G 214
Query: 62 SIDCIRELLAWGAD 75
+ I + LA G +
Sbjct: 215 GLGLILKRLAEGEE 228
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 10 DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIREL 69
D T LH A E V LL G V G +PLH+AA G + ++ L
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA----GWSPLHIAASAGRDEIVKAL 92
Query: 70 LAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEP 109
L GA + +G P A A +L A P
Sbjct: 93 LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
+N +G T LHLA ++ E L+++GA V PLH AA GS+
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKF----NQIPLHRAASVGSLKL 155
Query: 66 IRELLAWGADRLH-RDVSGRIPYAVALKHKHGACAALL 102
I L G ++ +D G P AL HG A LL
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN + G TPLH AA + R E +LL+ G A+ +T +H AA G++
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGG----ANPDAKDHYDATAMHRAAAKGNLKM 154
Query: 66 IRELLAWGADRLHRDVSGRIPYAVA 90
+ LL + A +D G P +A
Sbjct: 155 VHILLFYKASTNIQDTEGNTPLHLA 179
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 9 RDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRE 68
+D AT +H AA + + VHILL AST G+TPLHLA ++ +
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILL----FYKASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 69 LLAWGADRLHRDVSGRIPYAVA 90
L+ GA + + P VA
Sbjct: 191 LVTQGASIYIENKEEKTPLQVA 212
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN +D G +PLH+AA E V LL GA V A GC TPLH AA +
Sbjct: 66 VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQN-GC---TPLHYAASKNRHEI 121
Query: 66 IRELLAWGAD 75
LL GA+
Sbjct: 122 AVMLLEGGAN 131
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG 61
Y NI+D G TPLHLA + R E L+ GA + TPL +A G
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENK----EEKTPLQVAK--G 214
Query: 62 SIDCIRELLAWGAD 75
+ I + LA G +
Sbjct: 215 GLGLILKRLAEGEE 228
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 10 DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIREL 69
D T LH A E V LL G V G +PLH+AA G + ++ L
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA----GWSPLHIAASAGXDEIVKAL 92
Query: 70 LAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEP 109
L GA + +G P A A +L A P
Sbjct: 93 LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
+N +G T LHLA ++ E L+++GA V PLH AA GS+
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKF----NQIPLHRAASVGSLKL 155
Query: 66 IRELLAWGADRLH-RDVSGRIPYAVALKHKHGACAALL 102
I L G ++ +D G P AL HG A LL
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
+N +G T LHLA ++ E L+++GA V PLH AA GS+
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKF----NQIPLHRAASVGSLKL 155
Query: 66 IRELLAWGADRLH-RDVSGRIPYAVALKHKHGACAALL 102
I L G ++ +D G P AL HG A LL
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 10 DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIREL 69
D G T HLA R P C+ LLDS A G T LH+A + ++ L
Sbjct: 76 DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 135
Query: 70 LAWGADRLHRDV-SGRIPYAVALKHKHGACAALL 102
L GAD D+ SGR P A+++ + LL
Sbjct: 136 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 10 DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIREL 69
D G TPLH+A Q VH L++ Y TPLHLA +R L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 70 LAWGADRLHRDVSGRIPYAVALKHKHGACA-ALLNPAS 106
+ GA + D G+ +A +H+ C ALL+ A+
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAA 103
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
V+I+ GR +PL A V +LL GA V A GS+ LH A+ G +
Sbjct: 145 VDIKSGR--SPLIHAVENNSLSMVQLLLQHGANVNAQM----YSGSSALHSASGRGLLPL 198
Query: 66 IRELLAWGADRLHRDVSGRIPYAVA 90
+R L+ GAD ++ P VA
Sbjct: 199 VRTLVRSGADSSLKNCHNDTPLMVA 223
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSI 63
R ++I + TPLHLA P V +L+ +G AS G T HLA S
Sbjct: 37 RELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG----ASPMALDRHGQTAAHLACEHRSP 92
Query: 64 DCIRELLAWGA 74
C+R LL A
Sbjct: 93 TCLRALLDSAA 103
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 6 VNIRDGRGA-TPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID 64
VN ++ G TPLH A + R + V +LL GA G+TP LAA GS+
Sbjct: 31 VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN----GATPFLLAAIAGSVK 86
Query: 65 CIRELLAWGAD 75
++ L+ GAD
Sbjct: 87 LLKLFLSKGAD 97
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 20 AARQRRPECVHILLDSGALVC--ASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRL 77
A + + V LL+ GA V GG+ TPLH A + D + LL GAD +
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGW-----TPLHNAVQMSREDIVELLLRHGADPV 66
Query: 78 HRDVSGRIPYAVA 90
R +G P+ +A
Sbjct: 67 LRKKNGATPFLLA 79
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 16/73 (21%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAA------- 58
VN+R RG TPL LA ++ V LL+ + T G T L LA
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT---DSDGKTALLLAVELKLKKI 268
Query: 59 ------RGGSIDC 65
RG S DC
Sbjct: 269 AELLCKRGASTDC 281
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 8 IRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIR 67
+R G GAT L AA + E + ILLD + G L++ ++ I
Sbjct: 144 LRKG-GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT 202
Query: 68 ELLA-WGADRLHRDVSGRIPYAVALKHKH 95
LL GAD R G+ P +A++ KH
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKH 231
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 6 VNIRDGRGA-TPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID 64
VN ++ G TPLH A + R + V +LL GA G+TP LAA GS+
Sbjct: 51 VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN----GATPFILAAIAGSVK 106
Query: 65 CIRELLAWGAD 75
++ L+ GAD
Sbjct: 107 LLKLFLSKGAD 117
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 20 AARQRRPECVHILLDSGALVC--ASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRL 77
A + + V LL+ GA V GG+ TPLH A + D + LL GAD +
Sbjct: 32 AVQNEDVDLVQQLLEGGANVNFQEEEGGW-----TPLHNAVQMSREDIVELLLRHGADPV 86
Query: 78 HRDVSGRIPYAVA 90
R +G P+ +A
Sbjct: 87 LRKKNGATPFILA 99
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 16/73 (21%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAA------- 58
VN+R RG TPL LA ++ V LL+ + T G T L LA
Sbjct: 232 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT---DSDGKTALLLAVELKLKKI 288
Query: 59 ------RGGSIDC 65
RG S DC
Sbjct: 289 AELLCKRGASTDC 301
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 8 IRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIR 67
+R G GAT L AA + E + ILLD + G L++ ++ I
Sbjct: 164 LRKG-GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT 222
Query: 68 ELLA-WGADRLHRDVSGRIPYAVALKHKH 95
LL GAD R G+ P +A++ KH
Sbjct: 223 HLLLDHGADVNVRGERGKTPLILAVEKKH 251
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 59/148 (39%), Gaps = 27/148 (18%)
Query: 8 IRDGRGATPLHLAARQRRPECVHILLDS-------GALVCASTGGYGCPGSTPLHLAARG 60
+RD RG TPLHLA Q V +L S L + G+ C LHLA+
Sbjct: 70 LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC-----LHLASIH 124
Query: 61 GSIDCIRELLAWGAD-----------RLHRDVSGRIPYAVALKHKHGACAALLNPASAEP 109
G + + L++ GAD LH V + P V+L K GA + P
Sbjct: 125 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 184
Query: 110 --LVWPSPLKFISELNQEAKALLENALM 135
L W P I + Q + LEN M
Sbjct: 185 YQLTWGRPSTRIQQ--QLGQLTLENLQM 210
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 18/68 (26%)
Query: 1 GYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCP-------GSTP 53
G F+N ++ TPLHLA +PE LL G GC G+TP
Sbjct: 30 GDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL-----------GAGCDPELRDFRGNTP 78
Query: 54 LHLAARGG 61
LHLA G
Sbjct: 79 LHLACEQG 86
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat
Domain
Length = 232
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSG-ALVCASTGGYGCPGSTPLHLAARGGSID 64
V+ R G T LH+AA E +L+++ LV G T LH+A +++
Sbjct: 30 VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVN 89
Query: 65 CIRELLAWGA 74
+R LLA GA
Sbjct: 90 LVRALLARGA 99
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 15 TPLHLAARQRRPECVHI---LLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLA 71
T LHLA R +HI L+ + + TG GST LH + +C++ LL
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG----KGSTALHYCCLTDNAECLKLLLR 226
Query: 72 WGADRLHRDVSGRIPYAVALKHKHGACAALLNPA 105
A + SG P +A + KH C LL A
Sbjct: 227 GKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 45/134 (33%), Gaps = 39/134 (29%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVC----ASTGGYG-------------- 47
VNI D G T LH + V LLDSG VC + GY
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSG--VCKVDKQNRAGYSPIMLTALATLKTQD 161
Query: 48 -------------------CPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYA 88
G T L LA G +D ++ LLA AD +D G
Sbjct: 162 DIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALM 221
Query: 89 VALKHKHGACAALL 102
A +H H A LL
Sbjct: 222 CACEHGHKEIAGLL 235
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G + LH AA + +LL +GA + TPL LAAR GS +
Sbjct: 41 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA----NKDMQNNKEETPLFLAAREGSYET 96
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLN 103
+ LL A+R D R+P +A + H LL+
Sbjct: 97 AKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 134
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 50 GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEP 109
G PLH AA G ++ + LL GAD D P A+ H +C LL A+
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 99
Query: 110 LV-WPSPLK-FISELNQEAKALLE 131
V P L F + NQ KALL+
Sbjct: 100 TVKGPDGLTAFEATDNQAIKALLQ 123
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G + LH AA + +LL +GA + TPL LAAR GS +
Sbjct: 115 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA----NKDMQNNKEETPLFLAAREGSYET 170
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLN 103
+ LL A+R D R+P +A + H LL+
Sbjct: 171 AKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 208
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 50 GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVAL 91
G T LHLAAR D + LL AD +D GR P A+
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAV 63
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGS 62
A N D G T LHLAAR R + LL++ A G TPLH A +
Sbjct: 12 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDN----MGRTPLHAAVSADA 67
Query: 63 IDCIRELL 70
+ LL
Sbjct: 68 QGVFQILL 75
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G + LH AA + +LL +GA + TPL LAAR GS +
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA----NKDMQNNREETPLFLAAREGSYET 205
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLN 103
+ LL A+R D R+P +A + H LL+
Sbjct: 206 AKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 16/99 (16%)
Query: 6 VNIRDGRGATPLHLAA-------------RQRRPECVHILLDSGALVCASTGGYGCPGST 52
VN+R G TPL +A+ + P + + GA + T G T
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTD---RTGET 59
Query: 53 PLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVAL 91
LHLAAR D + LL AD +D GR P A+
Sbjct: 60 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 7 NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
NI+D G TPLH A IL+ + A G+TPL LAAR +
Sbjct: 84 NIQDNMGRTPLHAAVSADAQGVFQILIRNRA---TDLDARMHDGTTPLILAARLAVEGML 140
Query: 67 RELLAWGAD 75
+L+ AD
Sbjct: 141 EDLINSHAD 149
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 33.1 bits (74), Expect = 0.20, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Query: 170 ASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228
S +LC IC E ++++ CGH MC C A + CPFCR I
Sbjct: 23 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQG----------CPFCRCEI 71
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G + LH AA + +LL +GA + TPL LAAR GS +
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA----NKDMQNNREETPLFLAAREGSYET 205
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLN 103
+ LL A+R D R+P +A + H LL+
Sbjct: 206 AKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 16/99 (16%)
Query: 6 VNIRDGRGATPLHLAA-------------RQRRPECVHILLDSGALVCASTGGYGCPGST 52
VN+R G TPL +A+ + P + + GA + T G+T
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTD---RTGAT 59
Query: 53 PLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVAL 91
LHLAA D + LL AD +D GR P A+
Sbjct: 60 ALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 7 NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
NI+D G TPLH A IL+ + A G+TPL LAAR +
Sbjct: 84 NIQDNMGRTPLHAAVSADAQGVFQILIRNRA---TDLDARMHDGTTPLILAARLAVEGML 140
Query: 67 RELLAWGAD 75
+L+ AD
Sbjct: 141 EDLINSHAD 149
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G + LH AA + +LL +GA + TPL LAAR GS +
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA----NKDMQNNREETPLFLAAREGSYET 173
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLN 103
+ LL A+R D R+P +A + H LL+
Sbjct: 174 AKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 211
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 50 GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVAL 91
G T LHLAAR D + LL AD +D GR P A+
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 66
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLA 57
A N D G T LHLAAR R + LL++ A G TPLH A
Sbjct: 15 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEA----SADANIQDNMGRTPLHAA 65
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex
Including Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter
Dna Sequence
Length = 256
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 16/99 (16%)
Query: 6 VNIRDGRGATPLHLAA-------------RQRRPECVHILLDSGALVCASTGGYGCPGST 52
VN+R G TPL +A+ + P + + GA + T G T
Sbjct: 4 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTD---RTGET 60
Query: 53 PLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVAL 91
LHLAAR D + LL AD +D GR P A+
Sbjct: 61 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 99
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G + LH AA + +LL +GA + TPL LAAR GS +
Sbjct: 151 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA----NKDMQNNREETPLFLAAREGSYET 206
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLN 103
+ LL A+R D R+P +A + H LL+
Sbjct: 207 AKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 244
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 7 NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
NI+D G TPLH A IL+ + A G+TPL LAAR +
Sbjct: 85 NIQDNMGRTPLHAAVSADAQGVFQILIRNRA---TDLDARMHDGTTPLILAARLAVEGML 141
Query: 67 RELLAWGAD 75
+L+ AD
Sbjct: 142 EDLINSHAD 150
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VN D G+T L+ A + V L + G T LH AA G D
Sbjct: 99 VNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLG---DTALHAAAWKGYADI 155
Query: 66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
++ LLA GA R++ ++ + A + ACA+LL
Sbjct: 156 VQLLLAKGARTDLRNIEKKLAFDXA---TNAACASLL 189
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 12 RGATPLHLAARQRRPECVHILLDSGALVCASTGG------YGCP----GSTPLHLAARGG 61
+G T LH+A +R V +L+++GA V A+ G G P G PL LAA
Sbjct: 100 KGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159
Query: 62 SIDCIRELL--AWG-ADRLHRDVSG 83
+ ++ LL +W AD RD G
Sbjct: 160 QLAIVKFLLQNSWQPADISARDSVG 184
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Query: 170 ASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228
S +LC IC E ++++ CGH MC C A + CPFCR I
Sbjct: 335 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQG----------CPFCRCEI 383
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 50 GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEP 109
G PLH AA G ++ + LL GAD D P A+ H +C LL A+
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 94
Query: 110 LV-WPSPLKFISEL-NQEAKALLE 131
V P L + NQ KALL+
Sbjct: 95 TVKGPDGLTALEATDNQAIKALLQ 118
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 31.6 bits (70), Expect = 0.51, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Query: 170 ASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228
S +LC IC E ++++ CGH MC C + CPFCR I
Sbjct: 21 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQG----------CPFCRCEI 69
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 31.2 bits (69), Expect = 0.66, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Query: 170 ASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228
S +LC IC E ++++ CGH MC C + CPFCR I
Sbjct: 24 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQG----------CPFCRCEI 72
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 12 RGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCP---------GSTPLHLAARGGS 62
RG + LH+A +R +CV +L+++GA V A G G PL LAA
Sbjct: 94 RGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQ 153
Query: 63 IDCIRELL 70
D + LL
Sbjct: 154 WDVVSYLL 161
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Query: 170 ASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228
S +LC IC E ++++ CGH MC C + CPFCR I
Sbjct: 329 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQG----------CPFCRCEI 377
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Query: 170 ASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228
S +LC IC E ++++ CGH MC C + CPFCR I
Sbjct: 331 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQG----------CPFCRCEI 379
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Query: 170 ASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228
S +LC IC E ++++ CGH MC C + CPFCR I
Sbjct: 331 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQG----------CPFCRCEI 379
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Query: 170 ASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228
S +LC IC E ++++ CGH MC C + CPFCR I
Sbjct: 329 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQG----------CPFCRCEI 377
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 3 ARF-VNIRDGRGATPLHLAARQRRPECVHILLDS 35
AR+ VNI+D G TPLH AA + E IL+++
Sbjct: 221 ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
+N + G T LH A + V L+++GA + G PLH AA G +D
Sbjct: 66 INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN----EGWIPLHAAASCGYLDI 121
Query: 66 IRELLAWGA 74
L++ GA
Sbjct: 122 AEYLISQGA 130
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELL 70
G T LH AA +P+C+ +LL ALV G G T L +A + +C ELL
Sbjct: 207 GNTALHYAALYNQPDCLKLLLKGRALV----GTVNEAGETALDIARKKHHKEC-EELL 259
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 24 RRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSG 83
R + + LD ++ G T L++AAR G+I + LL +GAD + SG
Sbjct: 257 ERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSG 316
Query: 84 RIP 86
P
Sbjct: 317 LRP 319
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 50 GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALK----HKHGACAALLN 103
G+TPLH +++ ++ L+ G++RL+ D G A+K + G ALL+
Sbjct: 131 GNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 188
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 19/110 (17%)
Query: 126 AKALLENALMEANKEREKNIL--KGTAYSLPSPSHSDVGADDNISEASDTELCCICFEQV 183
A + +N+L E + KN+ K Y +P+ S + ++ + + C +C ++
Sbjct: 247 AANIFKNSLKEIDSTLYKNLFVDKNMKY-IPTEDVSGLSLEEQLRRLQEERTCKVCMDKE 305
Query: 184 CTIEVQDCGHQ-MCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV 232
++ CGH +C +C +L CP CR I V
Sbjct: 306 VSVVFIPCGHLVVCQECAPSL---------------RKCPICRGIIKGTV 340
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 15 TPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGA 74
TP AAR+ + + LL+ + G T L A GS C+R L GA
Sbjct: 47 TPWWTAARKADEQALSQLLEDRDVDAVDENG-----RTALLFVAGLGSDKCVRLLAEAGA 101
Query: 75 DRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLV 111
D HRD+ G L H A A + P E LV
Sbjct: 102 DLDHRDMRG------GLTALHMA-AGYVRPEVVEALV 131
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 9 RDGRGA-TPLHLAARQRRPECVHILLDSGA 37
RD RG T LH+AA RPE V L++ GA
Sbjct: 106 RDMRGGLTALHMAAGYVRPEVVEALVELGA 135
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VNI D G PLHLAA++ V L+ A ++ G G T LA G +
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA---SNVGHRNHKGDTACDLARLYGRNEV 152
Query: 66 IRELLAWGA 74
+ + A GA
Sbjct: 153 VSLMQANGA 161
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VNI D G PLHLAA++ V L+ A ++ G G T LA G +
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA---SNVGHRNHKGDTACDLARLYGRNEV 152
Query: 66 IRELLAWGA 74
+ + A GA
Sbjct: 153 VSLMQANGA 161
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VNI D G PLHLAA++ V L+ A ++ G G T LA G +
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA---SNVGHRNHKGDTACDLARLYGRNEV 152
Query: 66 IRELLAWGA 74
+ + A GA
Sbjct: 153 VSLMQANGA 161
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VNI D G PLHLAA++ V L+ A ++ G G T LA G +
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA---SNVGHRNHKGDTACDLARLYGRNEV 152
Query: 66 IRELLAWGA 74
+ + A GA
Sbjct: 153 VSLMQANGA 161
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCAST 43
VN D G TPLH AA + L++SGA V A T
Sbjct: 96 VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
VNI D G PLHLAA++ V L+ A ++ G G T LA G +
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA---SNVGHRNHKGDTACDLARLYGRNEV 152
Query: 66 IRELLAWGA 74
+ + A GA
Sbjct: 153 VSLMQANGA 161
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCAST 43
VN D G TPLH AA + L++SGA V A T
Sbjct: 96 VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133
>pdb|2ECY|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger)" Domain Of Tnf Receptor-Associated Factor 3
Length = 66
Score = 29.6 bits (65), Expect = 2.3, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 162 GADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTAC 215
G+ + D C C +C+ + +CGH+ C C AL + P TAC
Sbjct: 4 GSSGFVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPK-CTAC 56
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 9 RDGRGA-TPLHLAARQRRPECVHILLDSGA 37
RD RG T LH+AA RPE V L++ GA
Sbjct: 105 RDMRGGLTALHMAAGYVRPEVVEALVELGA 134
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 15 TPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGA 74
TP AAR+ + + LL+ + G T L A GS C+R L GA
Sbjct: 46 TPWWTAARKADEQALSQLLEDRDVDAVDENG-----RTALLFVAGLGSDKCVRLLAEAGA 100
Query: 75 DRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLV 111
D HRD+ G L H A A + P E LV
Sbjct: 101 DLDHRDMRG------GLTALHMA-AGYVRPEVVEALV 130
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 9 RDGRGATPLHLAARQRRPECVHILLDSGALVCA 41
+D G TP+ LAA++ R E V L+ GA V A
Sbjct: 309 QDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEA 341
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 12 RGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLA 71
+G T LH AA+ V L+ ++ G TP+ LAA+ G I+ + L+
Sbjct: 278 KGRTALHYAAQVSNXPIVKYLVGEKG---SNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQ 334
Query: 72 WGA 74
GA
Sbjct: 335 QGA 337
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELL 70
G T LH AA +P+C+ +LL ALV G G T L +A + +C ELL
Sbjct: 226 GNTALHYAALYNQPDCLKLLLKGRALV----GTVNEAGETALDIARKKHHKEC-EELL 278
>pdb|3IRS|A Chain A, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3IRS|B Chain B, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3IRS|C Chain C, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|A Chain A, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|B Chain B, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|C Chain C, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|D Chain D, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|E Chain E, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|F Chain F, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|G Chain G, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|H Chain H, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|I Chain I, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|J Chain J, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|K Chain K, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|L Chain L, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
Length = 291
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGST 52
R VN+ G ATP+H+ R+ P D+G V TGG P T
Sbjct: 120 RIVNLEPGVWATPMHVDDRRLYP-LYAFCEDNGIPVIMMTGGNAGPDIT 167
>pdb|2C2P|A Chain A, The Crystal Structure Of Mismatch Specific Uracil-Dna
Glycosylase (Mug) From Deinococcus Radiodurans
Length = 199
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 56 LAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPA-------SAE 108
+A R +D AW D L R V P VA K GA L P +
Sbjct: 85 VAKRHSGVDAALPGEAWRPDELRRKVEHYRPRIVAFTSKRGASETLGVPTGKLPYGPQPQ 144
Query: 109 PLVWPS 114
PL WP+
Sbjct: 145 PLDWPA 150
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 14 ATPLHLAARQRRPECVHILLDSGALVC-ASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
ATPL A LL +GA V A + G G PLH A G L
Sbjct: 236 ATPLIQATAANSLLACEFLLQNGANVNQADSAGRG-----PLHHATILGHTGLACLFLKR 290
Query: 73 GADRLHRDVSGRIPYAVALKHKHGACAALL 102
GAD RD GR P +A++ + LL
Sbjct: 291 GADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 14 ATPLHLAARQRRPECVHILLDSGALVC-ASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
ATPL A LL +GA V A + G G PLH A G L
Sbjct: 236 ATPLIQATAANSLLACEFLLQNGANVNQADSAGRG-----PLHHATILGHTGLACLFLKR 290
Query: 73 GADRLHRDVSGRIPYAVALKHKHGACAALL 102
GAD RD GR P +A++ + LL
Sbjct: 291 GADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 14 ATPLHLAARQRRPECVHILLDSGALVC-ASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
ATPL A LL +GA V A + G G PLH A G L
Sbjct: 236 ATPLIQATAANSLLACEFLLQNGANVNQADSAGRG-----PLHHATILGHTGLACLFLKR 290
Query: 73 GADRLHRDVSGRIPYAVALKHKHGACAALL 102
GAD RD GR P +A++ + LL
Sbjct: 291 GADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 27.7 bits (60), Expect = 8.5, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 16/71 (22%)
Query: 159 SDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQ-MCAQCTLALCCHNKPNPTTACLT 217
SD+ ++ + + C +C ++ +I CGH +C C +L
Sbjct: 10 SDLPVEEQLRRLQEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSL-------------- 55
Query: 218 PPVCPFCRSTI 228
CP CRSTI
Sbjct: 56 -RKCPICRSTI 65
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 51 STPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPAS 106
+ P+H AAR G +D + L GA RD GR+P +A + H A L A+
Sbjct: 79 TRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA 134
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 51 STPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPAS 106
+ P+H AAR G +D + L GA RD GR+P +A + H A L A+
Sbjct: 79 TRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,732,238
Number of Sequences: 62578
Number of extensions: 338960
Number of successful extensions: 1201
Number of sequences better than 100.0: 142
Number of HSP's better than 100.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 655
Number of HSP's gapped (non-prelim): 344
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)