Query 041054
Match_columns 298
No_of_seqs 493 out of 2051
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 03:20:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041054.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041054hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4412 26S proteasome regulat 99.9 1.7E-27 3.7E-32 187.6 8.8 127 5-145 64-191 (226)
2 KOG4412 26S proteasome regulat 99.9 3.2E-27 7E-32 186.1 5.8 130 5-148 29-161 (226)
3 PHA02791 ankyrin-like protein; 99.9 9.3E-25 2E-29 191.8 9.1 200 6-244 23-225 (284)
4 KOG0509 Ankyrin repeat and DHH 99.9 2.5E-24 5.4E-29 198.5 9.6 136 3-151 68-204 (600)
5 PHA02791 ankyrin-like protein; 99.9 4.7E-23 1E-27 181.0 12.2 134 2-152 52-187 (284)
6 KOG0509 Ankyrin repeat and DHH 99.9 1.1E-23 2.3E-28 194.3 7.8 137 1-151 99-237 (600)
7 PHA02874 ankyrin repeat protei 99.9 4.6E-23 1E-27 192.9 10.3 196 2-234 113-310 (434)
8 PHA02743 Viral ankyrin protein 99.9 1.7E-22 3.8E-27 164.6 10.8 142 1-156 8-159 (166)
9 PHA02741 hypothetical protein; 99.9 1.5E-22 3.3E-27 165.5 10.3 132 5-150 13-156 (169)
10 PHA02878 ankyrin repeat protei 99.9 2.9E-22 6.3E-27 189.7 11.6 183 2-222 59-309 (477)
11 PHA02875 ankyrin repeat protei 99.9 5.2E-22 1.1E-26 184.6 12.8 140 2-151 24-194 (413)
12 PHA03095 ankyrin-like protein; 99.9 1.8E-22 3.9E-27 190.7 9.4 133 2-148 36-176 (471)
13 PHA02859 ankyrin repeat protei 99.9 8.7E-22 1.9E-26 166.4 11.9 134 5-151 43-185 (209)
14 PHA02878 ankyrin repeat protei 99.9 8.3E-22 1.8E-26 186.5 12.0 135 2-152 156-294 (477)
15 PHA03100 ankyrin repeat protei 99.9 5.4E-22 1.2E-26 187.9 9.7 199 2-237 95-307 (480)
16 PHA03100 ankyrin repeat protei 99.9 3.3E-22 7.1E-27 189.4 7.7 208 2-240 57-277 (480)
17 PHA02874 ankyrin repeat protei 99.9 1.3E-21 2.8E-26 183.1 10.0 132 3-148 25-179 (434)
18 PHA02875 ankyrin repeat protei 99.9 3.5E-21 7.7E-26 179.0 12.2 131 7-151 96-228 (413)
19 KOG0502 Integral membrane anky 99.9 1E-21 2.2E-26 159.6 6.9 128 4-145 151-278 (296)
20 KOG0510 Ankyrin repeat protein 99.8 1.8E-21 4E-26 183.2 9.4 208 2-239 143-403 (929)
21 PHA03095 ankyrin-like protein; 99.8 1.7E-21 3.7E-26 184.0 9.1 217 2-235 72-312 (471)
22 PHA02859 ankyrin repeat protei 99.8 4.7E-21 1E-25 161.9 10.6 122 2-137 75-203 (209)
23 PHA02716 CPXV016; CPX019; EVM0 99.8 5E-21 1.1E-25 185.9 11.6 137 2-152 201-393 (764)
24 PHA02946 ankyin-like protein; 99.8 5.9E-21 1.3E-25 178.6 11.6 146 2-152 61-236 (446)
25 PHA02798 ankyrin-like protein; 99.8 4E-21 8.7E-26 182.4 10.5 134 2-149 60-209 (489)
26 PHA02716 CPXV016; CPX019; EVM0 99.8 9.7E-21 2.1E-25 183.9 13.2 209 4-235 167-425 (764)
27 KOG0514 Ankyrin repeat protein 99.8 6.7E-22 1.5E-26 171.2 4.5 137 5-151 260-432 (452)
28 KOG0508 Ankyrin repeat protein 99.8 1.4E-21 3.1E-26 174.2 6.5 131 2-147 106-236 (615)
29 PHA02798 ankyrin-like protein; 99.8 8.7E-21 1.9E-25 180.1 12.0 149 2-154 98-287 (489)
30 PHA02884 ankyrin repeat protei 99.8 1.1E-20 2.3E-25 166.4 11.4 130 7-146 26-157 (300)
31 PHA02989 ankyrin repeat protei 99.8 5.3E-21 1.2E-25 181.8 9.0 217 2-235 59-311 (494)
32 PHA02736 Viral ankyrin protein 99.8 3.4E-21 7.5E-26 155.1 6.0 129 5-149 9-149 (154)
33 KOG0510 Ankyrin repeat protein 99.8 1.2E-20 2.6E-25 177.8 10.0 136 5-151 265-403 (929)
34 PHA02876 ankyrin repeat protei 99.8 1E-20 2.2E-25 186.5 9.3 203 2-240 262-470 (682)
35 PHA02743 Viral ankyrin protein 99.8 2.5E-20 5.4E-25 151.9 9.3 106 2-110 46-155 (166)
36 PHA02946 ankyin-like protein; 99.8 5.5E-20 1.2E-24 172.1 12.5 215 2-240 94-350 (446)
37 PHA02989 ankyrin repeat protei 99.8 3.6E-20 7.8E-25 176.1 11.2 106 2-111 97-213 (494)
38 PHA02876 ankyrin repeat protei 99.8 1.9E-20 4.1E-25 184.6 9.3 136 2-151 167-334 (682)
39 PHA02795 ankyrin-like protein; 99.8 4.4E-20 9.6E-25 168.8 10.5 136 2-149 140-285 (437)
40 PLN03192 Voltage-dependent pot 99.8 5.1E-20 1.1E-24 184.5 11.6 132 2-149 547-678 (823)
41 KOG0508 Ankyrin repeat protein 99.8 2.4E-20 5.2E-25 166.4 7.7 128 9-150 80-207 (615)
42 KOG0195 Integrin-linked kinase 99.8 4E-20 8.7E-25 156.0 8.1 120 3-136 24-143 (448)
43 KOG0512 Fetal globin-inducing 99.8 1.5E-19 3.3E-24 141.9 9.5 123 4-140 88-212 (228)
44 PHA02917 ankyrin-like protein; 99.8 1.6E-19 3.6E-24 175.5 11.1 136 2-151 57-256 (661)
45 PHA02741 hypothetical protein; 99.8 4.1E-19 8.8E-24 145.2 9.8 103 3-108 50-157 (169)
46 PHA02730 ankyrin-like protein; 99.8 6.3E-19 1.4E-23 168.5 12.3 210 5-234 32-258 (672)
47 PF12796 Ank_2: Ankyrin repeat 99.8 1.3E-18 2.9E-23 126.7 10.8 87 17-111 1-87 (89)
48 PHA02730 ankyrin-like protein; 99.8 1E-18 2.3E-23 167.0 11.5 133 2-149 368-521 (672)
49 KOG0507 CASK-interacting adapt 99.8 2.8E-19 6.1E-24 167.4 7.4 203 4-234 40-242 (854)
50 PHA02795 ankyrin-like protein; 99.8 8.1E-19 1.8E-23 160.6 10.1 135 2-152 99-248 (437)
51 PHA02884 ankyrin repeat protei 99.8 2.5E-18 5.4E-23 151.4 12.7 103 2-107 55-161 (300)
52 PHA02917 ankyrin-like protein; 99.8 1.5E-18 3.2E-23 168.9 12.4 147 3-153 22-224 (661)
53 PHA02736 Viral ankyrin protein 99.8 6E-19 1.3E-23 142.0 7.5 101 6-109 48-152 (154)
54 cd00204 ANK ankyrin repeats; 99.7 1.3E-17 2.9E-22 127.7 11.2 126 7-146 1-126 (126)
55 KOG4177 Ankyrin [Cell wall/mem 99.7 3.1E-18 6.7E-23 170.0 8.5 140 2-151 463-631 (1143)
56 KOG0512 Fetal globin-inducing 99.7 6.1E-18 1.3E-22 132.9 8.4 121 16-150 66-188 (228)
57 KOG0502 Integral membrane anky 99.7 2.5E-18 5.5E-23 139.9 5.3 134 3-152 119-253 (296)
58 PLN03192 Voltage-dependent pot 99.7 3.3E-17 7.1E-22 164.4 14.5 127 9-151 521-648 (823)
59 KOG4214 Myotrophin and similar 99.7 1.3E-17 2.8E-22 117.7 6.8 104 15-133 4-107 (117)
60 KOG0505 Myosin phosphatase, re 99.7 1.9E-17 4.1E-22 150.3 7.4 135 2-150 62-256 (527)
61 KOG4177 Ankyrin [Cell wall/mem 99.7 2.1E-17 4.5E-22 164.2 7.7 135 2-150 429-597 (1143)
62 KOG0505 Myosin phosphatase, re 99.7 1.8E-17 3.8E-22 150.5 5.9 124 2-135 95-273 (527)
63 TIGR00870 trp transient-recept 99.7 5.5E-16 1.2E-20 154.3 14.2 125 3-137 42-219 (743)
64 KOG3676 Ca2+-permeable cation 99.7 1.4E-16 3.1E-21 151.0 8.6 130 11-148 182-330 (782)
65 TIGR00870 trp transient-recept 99.7 8.9E-17 1.9E-21 160.0 7.3 135 10-147 125-278 (743)
66 PHA02792 ankyrin-like protein; 99.6 4.1E-16 8.9E-21 148.0 8.4 131 4-148 62-239 (631)
67 KOG0514 Ankyrin repeat protein 99.6 4.9E-16 1.1E-20 135.1 7.8 96 5-104 331-428 (452)
68 PHA02792 ankyrin-like protein; 99.6 1.8E-15 3.8E-20 143.7 10.9 112 12-135 338-452 (631)
69 COG0666 Arp FOG: Ankyrin repea 99.6 2.2E-15 4.8E-20 127.1 10.6 130 6-149 66-203 (235)
70 KOG1710 MYND Zn-finger and ank 99.6 2E-15 4.4E-20 127.5 8.7 98 4-104 36-133 (396)
71 PF12796 Ank_2: Ankyrin repeat 99.6 7E-15 1.5E-19 106.9 8.3 64 13-80 26-89 (89)
72 KOG0507 CASK-interacting adapt 99.6 7.9E-16 1.7E-20 144.6 3.9 146 2-153 71-217 (854)
73 PF13857 Ank_5: Ankyrin repeat 99.6 4E-15 8.7E-20 98.5 4.5 55 32-90 1-56 (56)
74 PTZ00322 6-phosphofructo-2-kin 99.5 1.4E-14 3E-19 141.9 8.7 86 16-105 85-170 (664)
75 KOG4214 Myotrophin and similar 99.5 1.4E-14 3.1E-19 102.3 6.0 81 5-90 27-107 (117)
76 PF13637 Ank_4: Ankyrin repeat 99.5 2.5E-14 5.3E-19 94.0 6.8 54 13-70 1-54 (54)
77 COG0666 Arp FOG: Ankyrin repea 99.5 4.1E-14 8.9E-19 119.3 9.6 101 2-106 95-203 (235)
78 PF13637 Ank_4: Ankyrin repeat 99.5 2E-14 4.3E-19 94.5 6.0 54 50-103 1-54 (54)
79 KOG0195 Integrin-linked kinase 99.5 7.2E-15 1.6E-19 124.4 2.1 117 21-151 8-126 (448)
80 cd00204 ANK ankyrin repeats; 99.5 5E-13 1.1E-17 102.0 11.8 97 3-103 30-126 (126)
81 PF13857 Ank_5: Ankyrin repeat 99.5 5.6E-14 1.2E-18 93.0 4.6 51 3-57 6-56 (56)
82 KOG0515 p53-interacting protei 99.4 3.3E-13 7.1E-18 122.4 7.9 90 17-110 554-643 (752)
83 KOG1710 MYND Zn-finger and ank 99.4 1.1E-12 2.5E-17 111.0 10.3 122 13-148 12-134 (396)
84 KOG4369 RTK signaling protein 99.4 5.4E-13 1.2E-17 129.7 6.7 203 3-238 780-984 (2131)
85 KOG3676 Ca2+-permeable cation 99.4 1.1E-12 2.3E-17 125.0 8.0 137 4-150 134-298 (782)
86 KOG4369 RTK signaling protein 99.4 2.1E-13 4.5E-18 132.5 2.2 191 11-236 755-949 (2131)
87 KOG0515 p53-interacting protei 99.3 2.5E-12 5.4E-17 116.8 7.2 95 4-102 574-671 (752)
88 PTZ00322 6-phosphofructo-2-kin 99.3 4.2E-12 9.1E-17 124.5 9.2 86 2-91 104-196 (664)
89 KOG0818 GTPase-activating prot 99.2 2.7E-11 5.8E-16 109.3 8.8 94 7-103 121-220 (669)
90 KOG0783 Uncharacterized conser 99.2 9.5E-12 2.1E-16 118.3 3.5 87 4-93 43-129 (1267)
91 KOG0506 Glutaminase (contains 99.0 3.7E-10 7.9E-15 101.7 5.0 95 8-106 501-596 (622)
92 PF13606 Ank_3: Ankyrin repeat 98.9 1.1E-09 2.4E-14 62.3 3.8 28 50-77 2-29 (30)
93 PF13606 Ank_3: Ankyrin repeat 98.9 1.2E-09 2.5E-14 62.2 3.9 30 12-41 1-30 (30)
94 KOG0705 GTPase-activating prot 98.9 2.9E-09 6.4E-14 98.0 7.9 93 17-109 628-720 (749)
95 PF00023 Ank: Ankyrin repeat H 98.9 2E-09 4.3E-14 62.9 4.3 31 50-80 2-32 (33)
96 PF00023 Ank: Ankyrin repeat H 98.9 2.7E-09 5.9E-14 62.3 4.3 33 12-44 1-33 (33)
97 PLN03208 E3 ubiquitin-protein 98.8 1.7E-08 3.8E-13 82.0 8.3 79 167-245 12-95 (193)
98 KOG0823 Predicted E3 ubiquitin 98.8 8.9E-09 1.9E-13 85.2 6.7 65 170-242 44-108 (230)
99 PF13920 zf-C3HC4_3: Zinc fing 98.8 2.2E-09 4.8E-14 69.0 2.1 47 173-230 2-49 (50)
100 KOG0782 Predicted diacylglycer 98.8 9.6E-09 2.1E-13 94.5 6.8 99 3-105 889-989 (1004)
101 KOG0522 Ankyrin repeat protein 98.7 1.9E-08 4.2E-13 92.1 6.9 87 15-105 22-110 (560)
102 KOG0783 Uncharacterized conser 98.7 4.2E-09 9.1E-14 100.7 1.8 94 28-135 32-128 (1267)
103 KOG0506 Glutaminase (contains 98.7 1E-08 2.2E-13 92.6 3.0 101 46-156 502-603 (622)
104 KOG2384 Major histocompatibili 98.6 9.2E-08 2E-12 76.9 6.3 76 3-82 2-78 (223)
105 KOG0522 Ankyrin repeat protein 98.6 1.2E-07 2.6E-12 87.0 7.0 65 4-72 46-110 (560)
106 KOG0782 Predicted diacylglycer 98.6 8.4E-08 1.8E-12 88.4 5.7 122 17-152 870-993 (1004)
107 KOG2164 Predicted E3 ubiquitin 98.5 5.7E-08 1.2E-12 89.0 3.2 87 173-267 186-274 (513)
108 KOG0818 GTPase-activating prot 98.5 1.2E-07 2.7E-12 86.1 5.2 83 53-145 136-219 (669)
109 KOG0521 Putative GTPase activa 98.5 1.2E-07 2.5E-12 93.6 4.6 89 11-103 654-742 (785)
110 KOG0705 GTPase-activating prot 98.4 5.2E-07 1.1E-11 83.5 6.0 65 8-76 656-720 (749)
111 KOG4265 Predicted E3 ubiquitin 98.4 2E-07 4.3E-12 82.0 2.8 58 171-239 288-346 (349)
112 KOG1785 Tyrosine kinase negati 98.3 2.8E-07 6E-12 81.6 3.1 99 128-235 313-422 (563)
113 KOG4172 Predicted E3 ubiquitin 98.3 1.5E-07 3.2E-12 59.3 0.7 48 174-231 8-56 (62)
114 KOG0317 Predicted E3 ubiquitin 98.3 3.2E-07 6.9E-12 78.3 2.8 48 173-231 239-286 (293)
115 KOG0520 Uncharacterized conser 98.3 2.2E-07 4.7E-12 91.5 1.3 132 5-145 566-699 (975)
116 KOG0511 Ankyrin repeat protein 98.3 2.7E-06 5.9E-11 75.2 7.2 70 14-87 37-106 (516)
117 KOG2384 Major histocompatibili 98.2 1.7E-06 3.6E-11 69.7 5.2 66 36-105 2-68 (223)
118 KOG0521 Putative GTPase activa 98.2 8.9E-07 1.9E-11 87.5 3.3 86 49-144 655-740 (785)
119 KOG3609 Receptor-activated Ca2 98.2 2.4E-06 5.1E-11 82.8 5.6 96 4-110 53-158 (822)
120 PHA02929 N1R/p28-like protein; 98.1 3.8E-06 8.2E-11 71.4 4.2 53 171-234 172-232 (238)
121 KOG0320 Predicted E3 ubiquitin 98.1 1.8E-06 4E-11 68.5 2.1 49 172-231 130-180 (187)
122 PF15227 zf-C3HC4_4: zinc fing 98.1 3.5E-06 7.6E-11 51.7 2.9 42 176-224 1-42 (42)
123 KOG3609 Receptor-activated Ca2 98.0 1.2E-05 2.6E-10 78.1 6.9 128 12-150 24-155 (822)
124 KOG4275 Predicted E3 ubiquitin 98.0 1.2E-06 2.7E-11 74.6 -0.0 46 173-233 300-346 (350)
125 COG5574 PEX10 RING-finger-cont 98.0 3.5E-06 7.7E-11 71.1 2.5 48 173-229 215-262 (271)
126 PF13923 zf-C3HC4_2: Zinc fing 98.0 6.1E-06 1.3E-10 49.9 2.5 38 176-224 1-39 (39)
127 KOG0511 Ankyrin repeat protein 97.9 1.6E-05 3.4E-10 70.6 5.4 58 51-108 37-94 (516)
128 KOG2505 Ankyrin repeat protein 97.9 8.7E-05 1.9E-09 68.1 9.4 69 25-93 403-473 (591)
129 PF00097 zf-C3HC4: Zinc finger 97.9 1.2E-05 2.7E-10 49.1 2.6 40 176-224 1-41 (41)
130 PF13639 zf-RING_2: Ring finge 97.9 9.3E-06 2E-10 50.5 2.1 40 175-225 2-44 (44)
131 PF14634 zf-RING_5: zinc-RING 97.8 2.3E-05 5E-10 48.7 3.8 40 176-226 2-44 (44)
132 PHA02926 zinc finger-like prot 97.8 6.3E-06 1.4E-10 68.0 1.5 62 167-233 164-234 (242)
133 cd00162 RING RING-finger (Real 97.8 3.2E-05 7E-10 47.7 3.6 44 175-228 1-45 (45)
134 KOG1571 Predicted E3 ubiquitin 97.8 8.4E-06 1.8E-10 71.9 1.0 49 169-232 301-350 (355)
135 TIGR00599 rad18 DNA repair pro 97.6 5.3E-05 1.1E-09 69.2 3.8 52 168-230 21-72 (397)
136 smart00184 RING Ring finger. E 97.5 0.00014 3E-09 43.1 3.9 39 176-224 1-39 (39)
137 KOG0520 Uncharacterized conser 97.5 5.4E-05 1.2E-09 75.1 3.0 97 4-105 599-702 (975)
138 KOG4692 Predicted E3 ubiquitin 97.5 8.2E-05 1.8E-09 65.3 3.0 56 169-235 418-473 (489)
139 COG5432 RAD18 RING-finger-cont 97.4 8.7E-05 1.9E-09 63.5 2.7 46 173-229 25-70 (391)
140 COG5236 Uncharacterized conser 97.4 0.00021 4.6E-09 62.6 4.2 55 172-235 60-114 (493)
141 TIGR00570 cdk7 CDK-activating 97.4 0.00017 3.7E-09 63.3 3.6 50 173-232 3-57 (309)
142 smart00248 ANK ankyrin repeats 97.3 0.00039 8.4E-09 37.5 3.9 27 50-76 2-28 (30)
143 smart00248 ANK ankyrin repeats 97.3 0.00046 1E-08 37.2 4.0 29 12-40 1-29 (30)
144 KOG0287 Postreplication repair 97.3 9.2E-05 2E-09 64.7 1.4 52 172-234 22-73 (442)
145 PF13445 zf-RING_UBOX: RING-ty 97.2 0.00018 3.9E-09 44.2 1.6 31 176-207 1-35 (43)
146 smart00504 Ubox Modified RING 97.2 0.00047 1E-08 46.2 3.4 46 174-230 2-47 (63)
147 PF12678 zf-rbx1: RING-H2 zinc 97.1 0.00048 1E-08 47.7 2.8 42 173-225 19-73 (73)
148 PF14447 Prok-RING_4: Prokaryo 96.9 0.0003 6.4E-09 45.0 0.6 46 172-230 6-51 (55)
149 KOG2177 Predicted E3 ubiquitin 96.6 0.001 2.3E-08 59.0 2.0 45 171-226 11-55 (386)
150 KOG0824 Predicted E3 ubiquitin 96.5 0.0015 3.2E-08 56.6 2.2 57 173-239 7-63 (324)
151 COG5540 RING-finger-containing 96.5 0.0021 4.5E-08 55.6 2.9 51 168-228 318-371 (374)
152 KOG1100 Predicted E3 ubiquitin 96.3 0.0013 2.9E-08 55.0 0.6 46 174-234 159-205 (207)
153 KOG2505 Ankyrin repeat protein 96.3 0.0059 1.3E-07 56.4 4.6 56 9-71 426-481 (591)
154 KOG0978 E3 ubiquitin ligase in 96.1 0.002 4.4E-08 62.4 1.1 54 166-229 636-689 (698)
155 COG5243 HRD1 HRD ubiquitin lig 96.1 0.0039 8.4E-08 55.4 2.4 48 171-229 285-345 (491)
156 KOG1039 Predicted E3 ubiquitin 96.1 0.0039 8.5E-08 56.0 2.4 60 171-234 159-226 (344)
157 COG5152 Uncharacterized conser 95.7 0.0054 1.2E-07 49.8 1.5 46 174-230 197-242 (259)
158 KOG4159 Predicted E3 ubiquitin 95.6 0.0061 1.3E-07 55.9 1.9 51 172-233 83-133 (398)
159 KOG4628 Predicted E3 ubiquitin 95.5 0.0059 1.3E-07 54.7 1.4 47 174-230 230-279 (348)
160 KOG0802 E3 ubiquitin ligase [P 95.3 0.0072 1.6E-07 58.4 1.4 51 172-233 290-345 (543)
161 KOG1813 Predicted E3 ubiquitin 95.0 0.0077 1.7E-07 52.1 0.5 48 174-232 242-289 (313)
162 PF04564 U-box: U-box domain; 95.0 0.023 4.9E-07 39.3 2.7 53 172-234 3-55 (73)
163 KOG0311 Predicted E3 ubiquitin 94.9 0.0063 1.4E-07 53.9 -0.4 54 168-231 38-92 (381)
164 PF05290 Baculo_IE-1: Baculovi 94.8 0.029 6.3E-07 42.8 3.0 49 173-229 80-132 (140)
165 PF12861 zf-Apc11: Anaphase-pr 94.5 0.071 1.5E-06 37.7 4.2 37 185-229 46-82 (85)
166 PF14835 zf-RING_6: zf-RING of 94.3 0.0098 2.1E-07 39.5 -0.4 43 173-228 7-50 (65)
167 PF06128 Shigella_OspC: Shigel 94.3 0.22 4.7E-06 41.9 7.3 95 13-108 179-279 (284)
168 KOG1002 Nucleotide excision re 93.9 0.11 2.4E-06 48.5 5.3 62 168-235 531-592 (791)
169 PF07800 DUF1644: Protein of u 93.0 0.18 3.9E-06 39.8 4.5 64 173-236 2-98 (162)
170 KOG4739 Uncharacterized protei 92.5 0.087 1.9E-06 44.6 2.3 42 175-229 5-48 (233)
171 KOG0297 TNF receptor-associate 92.2 0.063 1.4E-06 49.7 1.3 49 172-231 20-69 (391)
172 KOG0825 PHD Zn-finger protein 92.2 0.052 1.1E-06 53.0 0.7 54 173-237 123-179 (1134)
173 PF06128 Shigella_OspC: Shigel 91.7 0.39 8.5E-06 40.4 5.2 53 23-76 227-280 (284)
174 KOG2879 Predicted E3 ubiquitin 91.1 0.18 3.9E-06 43.4 2.6 54 170-232 236-290 (298)
175 KOG3002 Zn finger protein [Gen 90.7 0.14 3.1E-06 45.3 1.8 46 172-231 47-93 (299)
176 KOG1001 Helicase-like transcri 90.5 0.14 3E-06 50.6 1.8 52 174-235 455-506 (674)
177 PF11793 FANCL_C: FANCL C-term 90.5 0.033 7.2E-07 38.1 -1.8 56 174-229 3-66 (70)
178 KOG1734 Predicted RING-contain 89.7 0.17 3.7E-06 43.4 1.3 49 172-229 223-281 (328)
179 COG5219 Uncharacterized conser 89.1 0.18 4E-06 50.4 1.3 52 169-229 1465-1523(1525)
180 PF11929 DUF3447: Domain of un 89.0 0.58 1.3E-05 32.4 3.5 47 52-105 8-54 (76)
181 COG5222 Uncharacterized conser 88.8 0.31 6.8E-06 42.4 2.4 43 174-226 275-318 (427)
182 PF14570 zf-RING_4: RING/Ubox 87.6 0.51 1.1E-05 29.5 2.2 28 190-227 19-46 (48)
183 KOG1428 Inhibitor of type V ad 87.5 0.27 5.9E-06 51.4 1.4 64 170-234 3483-3549(3738)
184 KOG4185 Predicted E3 ubiquitin 87.1 0.36 7.8E-06 42.9 1.8 30 189-228 25-54 (296)
185 PF11929 DUF3447: Domain of un 87.0 1.3 2.9E-05 30.6 4.3 48 14-72 7-54 (76)
186 KOG0828 Predicted E3 ubiquitin 86.0 0.86 1.9E-05 42.5 3.6 50 170-229 568-634 (636)
187 KOG1814 Predicted E3 ubiquitin 84.1 0.72 1.6E-05 42.1 2.2 49 174-225 185-236 (445)
188 smart00744 RINGv The RING-vari 83.9 2.3 4.9E-05 26.8 3.9 42 175-225 1-49 (49)
189 COG5175 MOT2 Transcriptional r 83.5 1 2.2E-05 40.0 2.8 49 172-230 13-65 (480)
190 KOG0804 Cytoplasmic Zn-finger 82.9 0.89 1.9E-05 41.9 2.3 34 170-203 172-209 (493)
191 PF04641 Rtf2: Rtf2 RING-finge 82.8 1.4 3E-05 38.4 3.5 59 171-241 111-173 (260)
192 KOG0826 Predicted E3 ubiquitin 82.8 1.1 2.4E-05 39.7 2.7 74 141-226 269-343 (357)
193 PF03158 DUF249: Multigene fam 81.8 2.9 6.4E-05 34.1 4.7 87 12-104 75-191 (192)
194 KOG0827 Predicted E3 ubiquitin 81.3 1.8 3.8E-05 39.3 3.6 54 173-234 4-61 (465)
195 KOG3039 Uncharacterized conser 79.0 2.3 5.1E-05 36.1 3.4 56 170-236 218-277 (303)
196 KOG3800 Predicted E3 ubiquitin 78.9 1.6 3.6E-05 38.0 2.5 31 187-227 19-49 (300)
197 KOG2660 Locus-specific chromos 76.7 0.8 1.7E-05 40.6 -0.0 50 172-232 14-64 (331)
198 KOG0825 PHD Zn-finger protein 73.3 2.8 6E-05 41.6 2.7 62 167-233 93-158 (1134)
199 KOG3842 Adaptor protein Pellin 70.6 3.8 8.1E-05 36.2 2.6 43 185-229 372-414 (429)
200 PF14569 zf-UDP: Zinc-binding 69.9 5.2 0.00011 27.7 2.6 50 172-231 8-64 (80)
201 PF03158 DUF249: Multigene fam 69.6 9.7 0.00021 31.2 4.6 45 17-71 147-191 (192)
202 KOG4367 Predicted Zn-finger pr 68.8 4 8.7E-05 37.6 2.5 32 172-203 3-34 (699)
203 KOG1941 Acetylcholine receptor 68.0 4.1 8.9E-05 37.1 2.4 50 173-231 365-418 (518)
204 COG5220 TFB3 Cdk activating ki 67.0 1.4 2.9E-05 37.3 -0.7 48 172-229 9-64 (314)
205 KOG1493 Anaphase-promoting com 66.1 4.4 9.4E-05 27.9 1.7 30 191-228 51-80 (84)
206 PF10272 Tmpp129: Putative tra 64.1 16 0.00034 33.4 5.4 60 172-231 270-353 (358)
207 PF04710 Pellino: Pellino; In 60.7 2.8 6.1E-05 38.3 0.0 44 184-229 358-401 (416)
208 KOG3799 Rab3 effector RIM1 and 59.9 4.9 0.00011 30.8 1.2 55 172-230 64-119 (169)
209 PLN02436 cellulose synthase A 59.6 5.6 0.00012 41.2 1.9 51 172-232 35-92 (1094)
210 KOG2231 Predicted E3 ubiquitin 59.3 6.6 0.00014 38.7 2.2 55 175-234 2-57 (669)
211 KOG2932 E3 ubiquitin ligase in 58.7 4 8.8E-05 35.9 0.6 42 175-229 92-134 (389)
212 KOG1812 Predicted E3 ubiquitin 58.4 28 0.00061 32.2 6.1 32 172-203 145-180 (384)
213 KOG2817 Predicted E3 ubiquitin 57.4 7.2 0.00016 35.7 2.0 47 173-227 334-383 (394)
214 PF03854 zf-P11: P-11 zinc fin 57.3 3.9 8.4E-05 25.4 0.2 27 192-229 20-46 (50)
215 KOG4445 Uncharacterized conser 57.1 5.1 0.00011 35.2 0.9 55 175-229 120-186 (368)
216 PF05883 Baculo_RING: Baculovi 56.3 8.2 0.00018 29.9 1.9 31 173-203 26-65 (134)
217 PF11789 zf-Nse: Zinc-finger o 55.8 11 0.00024 24.5 2.2 43 172-223 10-53 (57)
218 PLN02189 cellulose synthase 52.8 9.6 0.00021 39.4 2.2 51 172-232 33-90 (1040)
219 COG3813 Uncharacterized protei 48.0 13 0.00028 25.2 1.6 28 192-232 28-55 (84)
220 KOG3579 Predicted E3 ubiquitin 46.2 13 0.00029 32.4 1.8 58 171-228 266-327 (352)
221 PF10367 Vps39_2: Vacuolar sor 45.2 10 0.00022 27.7 0.9 29 172-200 77-107 (109)
222 KOG2113 Predicted RNA binding 45.0 23 0.0005 31.5 3.0 47 173-232 343-390 (394)
223 KOG4218 Nuclear hormone recept 44.4 8.9 0.00019 34.4 0.5 52 172-226 14-75 (475)
224 PF14445 Prok-RING_2: Prokaryo 43.6 2.5 5.3E-05 26.5 -2.2 44 174-231 8-54 (57)
225 PLN02638 cellulose synthase A 43.2 28 0.00061 36.3 3.8 51 172-232 16-73 (1079)
226 PHA03096 p28-like protein; Pro 42.2 8.3 0.00018 34.1 -0.0 50 174-228 179-236 (284)
227 PLN02400 cellulose synthase 42.2 14 0.00029 38.6 1.5 51 172-232 35-92 (1085)
228 KOG4591 Uncharacterized conser 42.1 23 0.00049 29.5 2.4 45 50-94 222-271 (280)
229 PHA02825 LAP/PHD finger-like p 42.0 41 0.0009 26.8 3.8 47 172-228 7-58 (162)
230 PLN02195 cellulose synthase A 41.8 22 0.00048 36.7 2.8 48 172-229 5-59 (977)
231 KOG1709 Guanidinoacetate methy 41.1 17 0.00038 30.7 1.7 39 33-75 2-40 (271)
232 PF14169 YdjO: Cold-inducible 40.8 21 0.00045 23.4 1.7 24 207-230 28-51 (59)
233 PHA02862 5L protein; Provision 40.2 35 0.00076 26.8 3.1 46 174-229 3-53 (156)
234 KOG1595 CCCH-type Zn-finger pr 38.9 5.4 0.00012 37.8 -1.8 89 12-106 57-155 (528)
235 PLN02915 cellulose synthase A 38.1 29 0.00062 36.2 3.0 51 172-232 14-71 (1044)
236 KOG3161 Predicted E3 ubiquitin 37.6 16 0.00035 35.6 1.1 31 173-203 11-45 (861)
237 COG5194 APC11 Component of SCF 36.9 56 0.0012 22.8 3.3 35 183-228 46-80 (88)
238 KOG2068 MOT2 transcription fac 35.5 30 0.00065 31.0 2.4 47 173-230 249-299 (327)
239 PF06906 DUF1272: Protein of u 35.0 26 0.00057 22.6 1.4 24 194-230 30-53 (57)
240 KOG1815 Predicted E3 ubiquitin 33.6 33 0.00073 32.4 2.6 65 171-239 68-136 (444)
241 KOG1645 RING-finger-containing 33.4 35 0.00075 31.5 2.5 49 173-230 4-57 (463)
242 COG4855 Uncharacterized protei 33.3 16 0.00034 24.5 0.2 58 172-229 6-74 (76)
243 KOG3836 HLH transcription fact 32.2 12 0.00026 36.2 -0.6 38 65-102 411-448 (605)
244 KOG1818 Membrane trafficking a 31.7 83 0.0018 31.0 4.8 83 142-229 133-222 (634)
245 TIGR00595 priA primosomal prot 30.3 14 0.0003 35.6 -0.6 42 186-227 214-262 (505)
246 PF04423 Rad50_zn_hook: Rad50 29.6 17 0.00037 23.1 -0.1 11 220-230 22-32 (54)
247 KOG3053 Uncharacterized conser 28.6 43 0.00093 28.9 2.1 55 172-229 19-82 (293)
248 PF02318 FYVE_2: FYVE-type zin 28.1 3.9 8.5E-05 31.0 -3.8 44 173-226 54-102 (118)
249 TIGR02652 conserved hypothetic 27.9 27 0.00059 27.1 0.7 19 218-236 9-27 (163)
250 PF09237 GAGA: GAGA factor; I 27.5 26 0.00057 22.2 0.5 16 215-230 21-36 (54)
251 KOG4451 Uncharacterized conser 27.4 1.6E+02 0.0035 25.0 5.2 27 188-225 244-270 (286)
252 KOG3899 Uncharacterized conser 27.1 60 0.0013 28.6 2.7 45 191-235 325-371 (381)
253 KOG3842 Adaptor protein Pellin 27.0 44 0.00096 29.7 1.9 42 185-234 316-359 (429)
254 KOG2930 SCF ubiquitin ligase, 27.0 52 0.0011 24.2 2.0 33 184-227 74-106 (114)
255 KOG3970 Predicted E3 ubiquitin 26.3 96 0.0021 26.3 3.7 52 175-229 52-105 (299)
256 PF02891 zf-MIZ: MIZ/SP-RING z 26.1 21 0.00046 22.4 -0.1 45 176-227 5-50 (50)
257 PF09654 DUF2396: Protein of u 25.9 31 0.00067 26.8 0.7 19 218-236 6-24 (161)
258 PF07191 zinc-ribbons_6: zinc- 25.8 3.4 7.4E-05 28.1 -3.9 43 175-233 3-45 (70)
259 PF10235 Cript: Microtubule-as 25.1 30 0.00065 24.8 0.5 38 173-230 44-81 (90)
260 KOG1952 Transcription factor N 25.0 52 0.0011 33.4 2.2 54 172-229 190-247 (950)
261 PF10571 UPF0547: Uncharacteri 24.9 39 0.00084 18.1 0.8 10 220-229 2-11 (26)
262 KOG1709 Guanidinoacetate methy 24.8 64 0.0014 27.4 2.4 37 2-38 4-40 (271)
263 COG1198 PriA Primosomal protei 24.0 22 0.00048 35.7 -0.4 43 185-227 435-484 (730)
264 PRK11032 hypothetical protein; 23.8 20 0.00043 28.8 -0.7 27 185-226 124-150 (160)
265 smart00064 FYVE Protein presen 22.6 49 0.0011 21.9 1.2 30 172-201 9-42 (68)
266 KOG3039 Uncharacterized conser 22.2 54 0.0012 28.2 1.5 32 172-203 42-73 (303)
267 COG1379 PHP family phosphoeste 21.9 20 0.00044 32.1 -1.0 38 192-235 244-282 (403)
268 PF07295 DUF1451: Protein of u 21.5 20 0.00042 28.4 -1.1 10 217-226 129-138 (146)
269 KOG0298 DEAD box-containing he 21.1 29 0.00063 36.8 -0.3 44 171-225 1151-1195(1394)
270 KOG4362 Transcriptional regula 21.0 36 0.00079 33.7 0.3 49 173-229 21-69 (684)
271 PF10217 DUF2039: Uncharacteri 20.5 73 0.0016 23.0 1.7 35 173-226 55-89 (92)
272 KOG0383 Predicted helicase [Ge 20.4 73 0.0016 31.9 2.3 53 169-229 43-96 (696)
273 PF13240 zinc_ribbon_2: zinc-r 20.3 16 0.00035 18.9 -1.3 9 219-227 14-22 (23)
274 smart00834 CxxC_CXXC_SSSS Puta 20.1 63 0.0014 18.8 1.2 16 216-231 24-39 (41)
No 1
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.7e-27 Score=187.60 Aligned_cols=127 Identities=30% Similarity=0.303 Sum_probs=76.6
Q ss_pred CcccCCCCCCcHHHHHHHcCChHHHHHHHhC-CCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Q 041054 5 FVNIRDGRGATPLHLAARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSG 83 (298)
Q Consensus 5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g 83 (298)
.+|-+|..||||||.|+..|+.++|+.|+.+ |+++|..++ .|.|+||||+..|..+++++|+++|+.++.+|..|
T Consensus 64 ~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn----~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~ 139 (226)
T KOG4412|consen 64 KPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTN----GGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQG 139 (226)
T ss_pred CCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecC----CCcceehhhhcCChhhHHHHHHhcCCCCccccccc
Confidence 3455555666666666666666666666655 666666555 56666666666666666666666666666666666
Q ss_pred CcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHH
Q 041054 84 RIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNI 145 (298)
Q Consensus 84 ~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~l 145 (298)
.||||-|+.-|..+++++|+.+|+. ++..|..|.||||.|+..+..+...+|
T Consensus 140 qtplHRAAavGklkvie~Li~~~a~----------~n~qDk~G~TpL~~al~e~~~d~a~lL 191 (226)
T KOG4412|consen 140 QTPLHRAAAVGKLKVIEYLISQGAP----------LNTQDKYGFTPLHHALAEGHPDVAVLL 191 (226)
T ss_pred CchhHHHHhccchhhHHHHHhcCCC----------CCcccccCccHHHHHHhccCchHHHHH
Confidence 6666666666666666666666654 455566666666666555555544433
No 2
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.2e-27 Score=186.06 Aligned_cols=130 Identities=28% Similarity=0.289 Sum_probs=118.4
Q ss_pred CcccCCC-CCCcHHHHHHHcCChHHHHHHHhC-CCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCccccc
Q 041054 5 FVNIRDG-RGATPLHLAARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW-GADRLHRDV 81 (298)
Q Consensus 5 ~vn~~d~-~G~TpLh~Aa~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~ 81 (298)
.+|.+|. +|+||||+||..|+.++|.+|++. +..+|..+. .||||||+|+..|+.++|+.|+.+ |+|+|..+.
T Consensus 29 SL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDd----aGWtPlhia~s~g~~evVk~Ll~r~~advna~tn 104 (226)
T KOG4412|consen 29 SLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDD----AGWTPLHIAASNGNDEVVKELLNRSGADVNATTN 104 (226)
T ss_pred hhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccc----cCCchhhhhhhcCcHHHHHHHhcCCCCCcceecC
Confidence 4566666 999999999999999999999963 666666655 899999999999999999999999 999999999
Q ss_pred CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054 82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG 148 (298)
Q Consensus 82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~ 148 (298)
.|.|+||||+..|..+|+++|+++|+. +..+|..+.||||.|+..|+.+++++|...
T Consensus 105 ~G~T~LHyAagK~r~eIaqlLle~ga~----------i~~kD~~~qtplHRAAavGklkvie~Li~~ 161 (226)
T KOG4412|consen 105 GGQTCLHYAAGKGRLEIAQLLLEKGAL----------IRIKDKQGQTPLHRAAAVGKLKVIEYLISQ 161 (226)
T ss_pred CCcceehhhhcCChhhHHHHHHhcCCC----------CcccccccCchhHHHHhccchhhHHHHHhc
Confidence 999999999999999999999999998 678999999999999999999988877653
No 3
>PHA02791 ankyrin-like protein; Provisional
Probab=99.91 E-value=9.3e-25 Score=191.78 Aligned_cols=200 Identities=17% Similarity=0.064 Sum_probs=150.8
Q ss_pred cccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCc
Q 041054 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRI 85 (298)
Q Consensus 6 vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t 85 (298)
.+.+|.+|+||||+|+..|+.+++++|++.|++++.. .|+||||+|+..|+.++|++|++.|++++.+|..|+|
T Consensus 23 a~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~------d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~T 96 (284)
T PHA02791 23 AFKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLL------ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNT 96 (284)
T ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC------CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC
Confidence 3578999999999999999999999999999988764 3689999999999999999999999999999999999
Q ss_pred HHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHH-HHHHHHHHHhhhHHHHHHHhcCCCCCCCCCCCCCCCCc
Q 041054 86 PYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEA-KALLENALMEANKEREKNILKGTAYSLPSPSHSDVGAD 164 (298)
Q Consensus 86 pL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~-~t~L~~A~~~~~~~~~~~ll~~~~~~~~~p~~~~~~~~ 164 (298)
|||+|+..++.+++++|+++|++. +..+..| .|||++|+..++.+++++|+...... .+..
T Consensus 97 pLh~Aa~~g~~eivk~Ll~~gadi----------n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~------~d~~-- 158 (284)
T PHA02791 97 ALYYAVDSGNMQTVKLFVKKNWRL----------MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST------FDLA-- 158 (284)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCc----------CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc------cccc--
Confidence 999999999999999999999983 4445555 48888888888888888887642100 0000
Q ss_pred ccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CC-CCCCCcccccccceeEEEEeecCCCC
Q 041054 165 DNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CL-TPPVCPFCRSTIAHLVVVKIENQEDA 242 (298)
Q Consensus 165 ~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~-~~~~Cp~cr~~I~~~~~~~~~~~~~~ 242 (298)
.+ ..+-....--||..++.-++..+++.+..+..+ +| ++.++-..+..++++++......+..
T Consensus 159 ------~g---------~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~ 223 (284)
T PHA02791 159 ------IL---------LSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSV 223 (284)
T ss_pred ------cC---------ccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccC
Confidence 00 001111111277777777777776665554444 44 77788888888888877765554444
Q ss_pred Cc
Q 041054 243 DR 244 (298)
Q Consensus 243 ~~ 244 (298)
+.
T Consensus 224 ~~ 225 (284)
T PHA02791 224 NL 225 (284)
T ss_pred cc
Confidence 33
No 4
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.91 E-value=2.5e-24 Score=198.46 Aligned_cols=136 Identities=35% Similarity=0.395 Sum_probs=122.3
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS 82 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~ 82 (298)
+.+++..|.+|.|+||+||.+++++++++|+++||++|..... .+.||||||+++|+..+|++|+++|||++.+|..
T Consensus 68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~---l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~ 144 (600)
T KOG0509|consen 68 GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGV---LGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQ 144 (600)
T ss_pred CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCC---CCCCcchHHHHcCcHHHHHHHHHcCCCCceecCC
Confidence 6789999999999999999999999999999999999998864 7999999999999999999999999999999999
Q ss_pred CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc-CCCC
Q 041054 83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK-GTAY 151 (298)
Q Consensus 83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~-~~~~ 151 (298)
|.+|||+|++.++..++.+|+..+++ ++.+|.+|+|||++|+.++....+.+|++ ++.+
T Consensus 145 G~~~lHla~~~~~~~~vayll~~~~d----------~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~ 204 (600)
T KOG0509|consen 145 GLTPLHLAAQFGHTALVAYLLSKGAD----------IDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASL 204 (600)
T ss_pred CCcHHHHHHHhCchHHHHHHHHhccc----------CCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccc
Confidence 99999999999999999999999988 46678888888888888887774444444 4443
No 5
>PHA02791 ankyrin-like protein; Provisional
Probab=99.89 E-value=4.7e-23 Score=181.02 Aligned_cols=134 Identities=16% Similarity=0.129 Sum_probs=99.5
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV 81 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 81 (298)
.+++++.+| |+||||+|+..|+.++|++|++.|++++.++. .|+||||+|+..|+.+++++|+++|++++.++.
T Consensus 52 ~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~----~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~ 125 (284)
T PHA02791 52 AGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDD----KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGK 125 (284)
T ss_pred CcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCC
Confidence 355666654 67888888888888888888888888877776 788888888888888888888888888888777
Q ss_pred CCC-cHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc-CCCCC
Q 041054 82 SGR-IPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK-GTAYS 152 (298)
Q Consensus 82 ~g~-tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~-~~~~~ 152 (298)
.|+ ||||+|+..++.+++++|++++++.. ....|.||||+|+..++.+++++|++ |++..
T Consensus 126 ~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~-----------d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n 187 (284)
T PHA02791 126 TGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-----------DLAILLSCIHITIKNGHVDMMILLLDYMTSTN 187 (284)
T ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCccc-----------ccccCccHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 774 78888888888888888887765411 01235788888888888887776655 44443
No 6
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.89 E-value=1.1e-23 Score=194.27 Aligned_cols=137 Identities=32% Similarity=0.290 Sum_probs=127.0
Q ss_pred CCCCCcccCC-CCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 041054 1 GYARFVNIRD-GRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79 (298)
Q Consensus 1 ~~~~~vn~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~ 79 (298)
++|++||..+ .-+.||||+|+++|++.+|++|+++|||++..|. +|.||||+|++.|+.-+|-+||.+|+|++.+
T Consensus 99 ~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~----~G~~~lHla~~~~~~~~vayll~~~~d~d~~ 174 (600)
T KOG0509|consen 99 SHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDK----QGLTPLHLAAQFGHTALVAYLLSKGADIDLR 174 (600)
T ss_pred HcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecC----CCCcHHHHHHHhCchHHHHHHHHhcccCCCc
Confidence 4789999999 7799999999999999999999999999999998 8999999999999999999999999999999
Q ss_pred ccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhh-HHHHHHHHHHHHhhhHHHHHHHhcCCCC
Q 041054 80 DVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELN-QEAKALLENALMEANKEREKNILKGTAY 151 (298)
Q Consensus 80 d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~-~~~~t~L~~A~~~~~~~~~~~ll~~~~~ 151 (298)
|.+|+||||||+.+++...+..|+..++.. ...| ..|.||||+|+..++...+.+|+++++.
T Consensus 175 D~~grTpLmwAaykg~~~~v~~LL~f~a~~----------~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~ 237 (600)
T KOG0509|consen 175 DNNGRTPLMWAAYKGFALFVRRLLKFGASL----------LLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGAD 237 (600)
T ss_pred CCCCCCHHHHHHHhcccHHHHHHHHhcccc----------cccccccCCchHHHHHhcCCcceEehhhhcCCc
Confidence 999999999999999988899999999983 4444 8899999999999999988888887653
No 7
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.89 E-value=4.6e-23 Score=192.89 Aligned_cols=196 Identities=19% Similarity=0.181 Sum_probs=154.7
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV 81 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 81 (298)
.|.+++.+|..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..++.+++++|+++|++++..|.
T Consensus 113 ~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~----~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~ 188 (434)
T PHA02874 113 CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDD----NGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDN 188 (434)
T ss_pred CcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCC----CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC
Confidence 4678999999999999999999999999999999999998887 899999999999999999999999999999999
Q ss_pred CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCCCCCCCCCCCCC
Q 041054 82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDV 161 (298)
Q Consensus 82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~~~~~~p~~~~~ 161 (298)
.|.||||+|+..|+.+++++|+++|++ +...+..|.||||.|+..+. +.+.+|+.+++...... .+
T Consensus 189 ~g~tpL~~A~~~g~~~iv~~Ll~~g~~----------i~~~~~~g~TpL~~A~~~~~-~~i~~Ll~~~~in~~d~---~G 254 (434)
T PHA02874 189 NGESPLHNAAEYGDYACIKLLIDHGNH----------IMNKCKNGFTPLHNAIIHNR-SAIELLINNASINDQDI---DG 254 (434)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCC----------CcCCCCCCCCHHHHHHHCCh-HHHHHHHcCCCCCCcCC---CC
Confidence 999999999999999999999999998 35567789999999998765 45566666665432111 11
Q ss_pred CCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCccc-ccccceeEEE
Q 041054 162 GADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFC-RSTIAHLVVV 234 (298)
Q Consensus 162 ~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~c-r~~I~~~~~~ 234 (298)
...-...... . ++..+...++..+++.+..+..+ ||++.++-.. +..+.+.++.
T Consensus 255 -----------~TpLh~A~~~-------~-~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~ 310 (434)
T PHA02874 255 -----------STPLHHAINP-------P-CDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIA 310 (434)
T ss_pred -----------CCHHHHHHhc-------C-CcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHH
Confidence 0000000001 0 24557888888888877776666 9999988766 4444444443
No 8
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.88 E-value=1.7e-22 Score=164.59 Aligned_cols=142 Identities=17% Similarity=0.133 Sum_probs=122.8
Q ss_pred CCCCCcccCCCCCCcHHHHHHHcCCh----HHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHH---HHHHHHcC
Q 041054 1 GYARFVNIRDGRGATPLHLAARQRRP----ECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC---IRELLAWG 73 (298)
Q Consensus 1 ~~~~~vn~~d~~G~TpLh~Aa~~g~~----~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~---v~~Ll~~g 73 (298)
|++.+++..+.++.++||+||+.|+. +++++|++.|++++..+. .|+||||+|+..|+.+. +++|++.|
T Consensus 8 ~~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~----~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G 83 (166)
T PHA02743 8 GNNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDH----HGRQCTHMVAWYDRANAVMKIELLVNMG 83 (166)
T ss_pred ccchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCC----CCCcHHHHHHHhCccCHHHHHHHHHHcC
Confidence 46778888999999999999999998 666678889999887777 89999999999988654 89999999
Q ss_pred CCCcccc-cCCCcHHHHHHhcCcHHHHHHhcc-CCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc-CCC
Q 041054 74 ADRLHRD-VSGRIPYAVALKHKHGACAALLNP-ASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK-GTA 150 (298)
Q Consensus 74 ad~~~~d-~~g~tpL~~A~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~-~~~ 150 (298)
++++.+| ..|.||||+|+..++.+++++|+. .|++ ++..+.++.|||++|...++.+++++|++ +++
T Consensus 84 adin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad----------~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~ 153 (166)
T PHA02743 84 ADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVN----------LGAINYQHETAYHIAYKMRDRRMMEILRANGAV 153 (166)
T ss_pred CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCC----------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999998 589999999999999999999995 7988 46678899999999999999998888776 555
Q ss_pred CCCCCC
Q 041054 151 YSLPSP 156 (298)
Q Consensus 151 ~~~~~p 156 (298)
...+..
T Consensus 154 ~~~~~~ 159 (166)
T PHA02743 154 CDDPLS 159 (166)
T ss_pred CCCccc
Confidence 554433
No 9
>PHA02741 hypothetical protein; Provisional
Probab=99.88 E-value=1.5e-22 Score=165.53 Aligned_cols=132 Identities=19% Similarity=0.214 Sum_probs=117.8
Q ss_pred CcccCCCCCCcHHHHHHHcCChHHHHHHHh------CCCCccccCCCCCCCCChHHHHHHHcCC----HHHHHHHHHcCC
Q 041054 5 FVNIRDGRGATPLHLAARQRRPECVHILLD------SGALVCASTGGYGCPGSTPLHLAARGGS----IDCIRELLAWGA 74 (298)
Q Consensus 5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~------~ga~~~~~~~~~~~~g~TpLh~A~~~g~----~~~v~~Ll~~ga 74 (298)
.++.+|..|.||||+|+..|+.++|++|+. .|++++.++. .|+||||+|+..|+ .+++++|+++|+
T Consensus 13 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~----~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~ga 88 (169)
T PHA02741 13 MIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDD----AGQMCIHIAAEKHEAQLAAEIIDHLIELGA 88 (169)
T ss_pred HhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCC----CCCcHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 467889999999999999999999999864 3677887776 89999999999999 589999999999
Q ss_pred CCccccc-CCCcHHHHHHhcCcHHHHHHhcc-CCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCC
Q 041054 75 DRLHRDV-SGRIPYAVALKHKHGACAALLNP-ASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTA 150 (298)
Q Consensus 75 d~~~~d~-~g~tpL~~A~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~ 150 (298)
+++.++. .|+||||+|+..++.+++++|+. .|++ ++..+.+|+|||+.|...++.+++++|++-.+
T Consensus 89 din~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~----------~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~ 156 (169)
T PHA02741 89 DINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID----------LHFCNADNKSPFELAIDNEDVAMMQILREIVA 156 (169)
T ss_pred CCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC----------CCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999985 89999999999999999999997 5887 46678889999999999999999999887543
No 10
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.87 E-value=2.9e-22 Score=189.67 Aligned_cols=183 Identities=19% Similarity=0.129 Sum_probs=143.9
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChH------------------------------------------------------
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPE------------------------------------------------------ 27 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~------------------------------------------------------ 27 (298)
.|+++|.+|..|+||||+||..|+.+
T Consensus 59 ~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~ 138 (477)
T PHA02878 59 RGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDK 138 (477)
T ss_pred CCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhh
Confidence 47899999999999999999876543
Q ss_pred ----------HHHHHHhCCCCccccCCCCCCC-CChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcH
Q 041054 28 ----------CVHILLDSGALVCASTGGYGCP-GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHG 96 (298)
Q Consensus 28 ----------~v~~Ll~~ga~~~~~~~~~~~~-g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~ 96 (298)
++++|+++|++++..+. . |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.
T Consensus 139 ~~~~~~~~~~iv~~Ll~~gadin~~~~----~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~ 214 (477)
T PHA02878 139 KSKDDIIEAEITKLLLSYGADINMKDR----HKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNK 214 (477)
T ss_pred ccchhhHHHHHHHHHHHcCCCCCccCC----CCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCH
Confidence 56667777777777766 5 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHh-hhHHHHHHHhcC-CCCCCCCCCCCCCCCcccccccCCCc
Q 041054 97 ACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALME-ANKEREKNILKG-TAYSLPSPSHSDVGADDNISEASDTE 174 (298)
Q Consensus 97 ~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~-~~~~~~~~ll~~-~~~~~~~p~~~~~~~~~~~~~~~~~~ 174 (298)
+++++|+++|++ ++..+..|.||||+|+.. ++.+++++|++. ++...... ..+ .
T Consensus 215 ~iv~~Ll~~ga~----------in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~--~~g-----------~- 270 (477)
T PHA02878 215 PIVHILLENGAS----------TDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSY--ILG-----------L- 270 (477)
T ss_pred HHHHHHHHcCCC----------CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCC--CCC-----------C-
Confidence 999999999998 466788899999999976 578888877664 44322110 000 0
Q ss_pred ccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCc
Q 041054 175 LCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCP 222 (298)
Q Consensus 175 ~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp 222 (298)
++....+++..+...++..+++.+..+..+ ||++.++.
T Consensus 271 ----------TpLh~A~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~ 309 (477)
T PHA02878 271 ----------TALHSSIKSERKLKLLLEYGADINSLNSYKLTPLSSAVK 309 (477)
T ss_pred ----------CHHHHHccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence 000001355667888888888887777777 88888874
No 11
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.87 E-value=5.2e-22 Score=184.61 Aligned_cols=140 Identities=24% Similarity=0.208 Sum_probs=112.5
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCC------------------------------CCCCCCC
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTG------------------------------GYGCPGS 51 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~------------------------------~~~~~g~ 51 (298)
.|+++|.++..|.||||+|+..|+.++|++|+++|++++..+. ..+..|.
T Consensus 24 ~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~ 103 (413)
T PHA02875 24 IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGM 103 (413)
T ss_pred CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCC
Confidence 4678888888899999999999999999999998887765521 1123578
Q ss_pred hHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHH
Q 041054 52 TPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLE 131 (298)
Q Consensus 52 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~ 131 (298)
||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||
T Consensus 104 tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~----------~~~~d~~g~TpL~ 173 (413)
T PHA02875 104 TPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC----------LDIEDCCGCTPLI 173 (413)
T ss_pred CHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----------CCCCCCCCCCHHH
Confidence 888888888888888888888888888888888888888888888888888888887 3556778899999
Q ss_pred HHHHhhhHHHHHHHhc-CCCC
Q 041054 132 NALMEANKEREKNILK-GTAY 151 (298)
Q Consensus 132 ~A~~~~~~~~~~~ll~-~~~~ 151 (298)
+|+..++.+++++|++ |++.
T Consensus 174 ~A~~~g~~eiv~~Ll~~ga~~ 194 (413)
T PHA02875 174 IAMAKGDIAICKMLLDSGANI 194 (413)
T ss_pred HHHHcCCHHHHHHHHhCCCCC
Confidence 9999999998887766 4443
No 12
>PHA03095 ankyrin-like protein; Provisional
Probab=99.87 E-value=1.8e-22 Score=190.68 Aligned_cols=133 Identities=32% Similarity=0.346 Sum_probs=118.4
Q ss_pred CCCCcccCCCCCCcHHHHHHHcC---ChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcC-CHHHHHHHHHcCCCCc
Q 041054 2 YARFVNIRDGRGATPLHLAARQR---RPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG-SIDCIRELLAWGADRL 77 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g---~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g-~~~~v~~Ll~~gad~~ 77 (298)
+|+++|.+|..|.||||+|+..+ +.+++++|+++|+++|..+. .|+||||+|+..+ +.+++++|+++|++++
T Consensus 36 ~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~----~g~TpLh~A~~~~~~~~iv~lLl~~ga~in 111 (471)
T PHA03095 36 AGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPER----CGFTPLHLYLYNATTLDVIKLLIKAGADVN 111 (471)
T ss_pred cCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHcCCcHHHHHHHHHcCCCCC
Confidence 57899999999999999999998 99999999999999999888 8999999999999 5999999999999999
Q ss_pred ccccCCCcHHHHHH--hcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhh--hHHHHHHHhcC
Q 041054 78 HRDVSGRIPYAVAL--KHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEA--NKEREKNILKG 148 (298)
Q Consensus 78 ~~d~~g~tpL~~A~--~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~--~~~~~~~ll~~ 148 (298)
.+|..|.||||+|+ ..++.+++++|+++|+++ +..+..|.||||.|+..+ ..+++++|++.
T Consensus 112 ~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~----------~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~ 176 (471)
T PHA03095 112 AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV----------NALDLYGMTPLAVLLKSRNANVELLRLLIDA 176 (471)
T ss_pred CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC----------CccCCCCCCHHHHHHHcCCCCHHHHHHHHHc
Confidence 99999999999999 566889999999999984 556777888888887765 45666666654
No 13
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.87 E-value=8.7e-22 Score=166.41 Aligned_cols=134 Identities=17% Similarity=0.163 Sum_probs=115.5
Q ss_pred CcccCCCCCCcHHHHHHHcC--ChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCccc
Q 041054 5 FVNIRDGRGATPLHLAARQR--RPECVHILLDSGALVCASTGGYGCPGSTPLHLAARG---GSIDCIRELLAWGADRLHR 79 (298)
Q Consensus 5 ~vn~~d~~G~TpLh~Aa~~g--~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~---g~~~~v~~Ll~~gad~~~~ 79 (298)
.+|..|..|.||||+|+..+ +.+++++|+++|++++.++.. .|+||||+|+.. ++.+++++|+++|++++.+
T Consensus 43 ~~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~---~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~ 119 (209)
T PHA02859 43 FVNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRD---NNLSALHHYLSFNKNVEPEILKILIDSGSSITEE 119 (209)
T ss_pred hhhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCC---CCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCc
Confidence 36788999999999999855 899999999999999988632 699999998763 4799999999999999999
Q ss_pred ccCCCcHHHHHHh--cCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHH-HHHhhhHHHHHHHhc-CCCC
Q 041054 80 DVSGRIPYAVALK--HKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLEN-ALMEANKEREKNILK-GTAY 151 (298)
Q Consensus 80 d~~g~tpL~~A~~--~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~-A~~~~~~~~~~~ll~-~~~~ 151 (298)
|..|.||||+|+. .++.+++++|+++|++ ++.+|.+|.||||. |...++.+++++|++ |+++
T Consensus 120 d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad----------in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi 185 (209)
T PHA02859 120 DEDGKNLLHMYMCNFNVRINVIKLLIDSGVS----------FLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDI 185 (209)
T ss_pred CCCCCCHHHHHHHhccCCHHHHHHHHHcCCC----------cccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCC
Confidence 9999999999886 4689999999999999 56788899999996 455678888888775 4544
No 14
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.87 E-value=8.3e-22 Score=186.55 Aligned_cols=135 Identities=24% Similarity=0.299 Sum_probs=119.7
Q ss_pred CCCCcccCCCC-CCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054 2 YARFVNIRDGR-GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD 80 (298)
Q Consensus 2 ~~~~vn~~d~~-G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d 80 (298)
+|+++|.+|.. |+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..++.+++++|++.|++++.+|
T Consensus 156 ~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~----~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d 231 (477)
T PHA02878 156 YGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDK----TNNSPLHHAVKHYNKPIVHILLENGASTDARD 231 (477)
T ss_pred cCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCC----CCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCC
Confidence 58899999999 99999999999999999999999999998887 89999999999999999999999999999999
Q ss_pred cCCCcHHHHHHhc-CcHHHHHHhccCCCCCCCCCCChhhhhHhhH-HHHHHHHHHHHhhhHHHHHHHhc-CCCCC
Q 041054 81 VSGRIPYAVALKH-KHGACAALLNPASAEPLVWPSPLKFISELNQ-EAKALLENALMEANKEREKNILK-GTAYS 152 (298)
Q Consensus 81 ~~g~tpL~~A~~~-~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~-~~~t~L~~A~~~~~~~~~~~ll~-~~~~~ 152 (298)
..|.||||+|+.. ++.+++++|+++|+++. ..+. .|.||||.| .++.+++++|++ |+++.
T Consensus 232 ~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn----------~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin 294 (477)
T PHA02878 232 KCGNTPLHISVGYCKDYDILKLLLEHGVDVN----------AKSYILGLTALHSS--IKSERKLKLLLEYGADIN 294 (477)
T ss_pred CCCCCHHHHHHHhcCCHHHHHHHHHcCCCCC----------ccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCC
Confidence 9999999999975 78999999999999953 3343 689999999 455666776665 45543
No 15
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.86 E-value=5.4e-22 Score=187.87 Aligned_cols=199 Identities=19% Similarity=0.125 Sum_probs=153.6
Q ss_pred CCCCcccCCCCCCcHHHHHH--HcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCc
Q 041054 2 YARFVNIRDGRGATPLHLAA--RQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG--SIDCIRELLAWGADRL 77 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa--~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g--~~~~v~~Ll~~gad~~ 77 (298)
+|++++..|..|.||||+|+ ..|+.+++++|+++|++++..+. .|.||||+|+..+ +.+++++|+++|++++
T Consensus 95 ~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din 170 (480)
T PHA03100 95 YGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNS----DGENLLHLYLESNKIDLKILKLLIDKGVDIN 170 (480)
T ss_pred CCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCC----CCCcHHHHHHHcCCChHHHHHHHHHCCCCcc
Confidence 47788888888999999999 88899999999999988888776 7889999999988 8999999999999998
Q ss_pred ccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHH------HHHHHHHHHhhh--HHHHHHHhcC-
Q 041054 78 HRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEA------KALLENALMEAN--KEREKNILKG- 148 (298)
Q Consensus 78 ~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~------~t~L~~A~~~~~--~~~~~~ll~~- 148 (298)
.+|..|.||||+|+..++.+++++|+++|+++.. .+..+ .|+||.|+..++ .++++.|++.
T Consensus 171 ~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~----------~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g 240 (480)
T PHA03100 171 AKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINA----------GDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYG 240 (480)
T ss_pred cccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccC----------CCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcC
Confidence 8888899999999999999999999999888543 23333 899999999998 8888887765
Q ss_pred CCCCCCCCCCCCCCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCcccccc
Q 041054 149 TAYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRST 227 (298)
Q Consensus 149 ~~~~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~ 227 (298)
+++..... .+ ...-... .-.|+..+...++..+++.+..+..+ ||++.++-.++..
T Consensus 241 ~din~~d~---~g-----------~TpL~~A---------~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~ 297 (480)
T PHA03100 241 VPINIKDV---YG-----------FTPLHYA---------VYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKE 297 (480)
T ss_pred CCCCCCCC---CC-----------CCHHHHH---------HHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHH
Confidence 44322110 00 0000111 11367778888888888776666666 8999999999998
Q ss_pred cceeEEEEee
Q 041054 228 IAHLVVVKIE 237 (298)
Q Consensus 228 I~~~~~~~~~ 237 (298)
+.++++....
T Consensus 298 iv~~Ll~~g~ 307 (480)
T PHA03100 298 IFKLLLNNGP 307 (480)
T ss_pred HHHHHHhcCC
Confidence 8888887643
No 16
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.86 E-value=3.3e-22 Score=189.38 Aligned_cols=208 Identities=18% Similarity=0.087 Sum_probs=147.8
Q ss_pred CCCCcccCCCCCCcHHHH-----HHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHH--HcCCHHHHHHHHHcCC
Q 041054 2 YARFVNIRDGRGATPLHL-----AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAA--RGGSIDCIRELLAWGA 74 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~-----Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~--~~g~~~~v~~Ll~~ga 74 (298)
.|++++..+..|.||||+ |+..++.+++++|+++|++++..+. .|.||||+|+ ..|+.+++++|+++|+
T Consensus 57 ~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~----~g~tpL~~A~~~~~~~~~iv~~Ll~~g~ 132 (480)
T PHA03100 57 NGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDN----NGITPLLYAISKKSNSYSIVEYLLDNGA 132 (480)
T ss_pred cCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCC----CCCchhhHHHhcccChHHHHHHHHHcCC
Confidence 466777777788888888 8888888888888888888776665 6888888888 8888888888888888
Q ss_pred CCcccccCCCcHHHHHHhcC--cHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC-CC
Q 041054 75 DRLHRDVSGRIPYAVALKHK--HGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT-AY 151 (298)
Q Consensus 75 d~~~~d~~g~tpL~~A~~~~--~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~-~~ 151 (298)
+++..+..|.||||+|+..+ +.+++++|+++|++ ++..+..|.||||+|+..++.+++++|++.+ +.
T Consensus 133 ~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d----------in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~ 202 (480)
T PHA03100 133 NVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD----------INAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADI 202 (480)
T ss_pred CCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCC----------cccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCc
Confidence 88888888888888888888 78888888888877 3555667888888888888888888777643 32
Q ss_pred CCCCCCCCCCCCcccccccCCCcccccccccccceEEeCCCc--hhHHHHHHHHhhcCCCCCCCC-CCCCCCCccccccc
Q 041054 152 SLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGH--QMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRSTI 228 (298)
Q Consensus 152 ~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH--~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I 228 (298)
........ ....+ .. +.......|+ ..+...++..++..+..+..+ ||++.++-..+..+
T Consensus 203 ~~~~~~~~------------~~~~~----~t-~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~i 265 (480)
T PHA03100 203 NAGDIETL------------LFTIF----ET-PLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEF 265 (480)
T ss_pred cCCCCCCC------------cHHHH----Hh-HHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 21100000 00000 00 0000111256 668888988887776666666 99999999999999
Q ss_pred ceeEEEEeecCC
Q 041054 229 AHLVVVKIENQE 240 (298)
Q Consensus 229 ~~~~~~~~~~~~ 240 (298)
+++++......+
T Consensus 266 v~~Ll~~gad~n 277 (480)
T PHA03100 266 VKYLLDLGANPN 277 (480)
T ss_pred HHHHHHcCCCCC
Confidence 999988765443
No 17
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.86 E-value=1.3e-21 Score=183.10 Aligned_cols=132 Identities=20% Similarity=0.158 Sum_probs=98.2
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC--------
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGA-------- 74 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga-------- 74 (298)
+..+|..+..|.||||.|+..|+.++|++|++.|++++..+. .|.||||+|+..|+.+++++|+++|+
T Consensus 25 ~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~----~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~ 100 (434)
T PHA02874 25 GNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINT----KIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIP 100 (434)
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhc
Confidence 345677777888888888888888888888888888877665 67788888888877777777776554
Q ss_pred ---------------CCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhH
Q 041054 75 ---------------DRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANK 139 (298)
Q Consensus 75 ---------------d~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~ 139 (298)
+++.+|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..++.
T Consensus 101 ~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~----------n~~d~~g~tpLh~A~~~~~~ 170 (434)
T PHA02874 101 CIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV----------NIEDDNGCYPIHIAIKHNFF 170 (434)
T ss_pred cCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC----------CCcCCCCCCHHHHHHHCCcH
Confidence 45556777778888888888888888888877773 44556677777777777777
Q ss_pred HHHHHHhcC
Q 041054 140 EREKNILKG 148 (298)
Q Consensus 140 ~~~~~ll~~ 148 (298)
+++++|++.
T Consensus 171 ~iv~~Ll~~ 179 (434)
T PHA02874 171 DIIKLLLEK 179 (434)
T ss_pred HHHHHHHHC
Confidence 777766654
No 18
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.85 E-value=3.5e-21 Score=179.03 Aligned_cols=131 Identities=24% Similarity=0.245 Sum_probs=117.7
Q ss_pred ccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcH
Q 041054 7 NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIP 86 (298)
Q Consensus 7 n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp 86 (298)
+..+..|+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 96 ~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~----~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~Tp 171 (413)
T PHA02875 96 DVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNT----DKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTP 171 (413)
T ss_pred ccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 34567899999999999999999999999999998887 79999999999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHH-HHHHHHHHHhhhHHHHHHHhcC-CCC
Q 041054 87 YAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEA-KALLENALMEANKEREKNILKG-TAY 151 (298)
Q Consensus 87 L~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~-~t~L~~A~~~~~~~~~~~ll~~-~~~ 151 (298)
||+|+..|+.+++++|+++|+++.. .+..+ .+++++|+..++.+++++|++. ++.
T Consensus 172 L~~A~~~g~~eiv~~Ll~~ga~~n~----------~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~ 228 (413)
T PHA02875 172 LIIAMAKGDIAICKMLLDSGANIDY----------FGKNGCVAALCYAIENNKIDIVRLFIKRGADC 228 (413)
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCc----------CCCCCCchHHHHHHHcCCHHHHHHHHHCCcCc
Confidence 9999999999999999999999543 34444 5899999999999998888764 444
No 19
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.85 E-value=1e-21 Score=159.57 Aligned_cols=128 Identities=28% Similarity=0.299 Sum_probs=118.5
Q ss_pred CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Q 041054 4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSG 83 (298)
Q Consensus 4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g 83 (298)
..||..|+.|.|||++|+.+|++.+|++||+.||+++.... ...|+|++|++.|..++|++||.++.|+|..|.+|
T Consensus 151 n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk----~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNG 226 (296)
T KOG0502|consen 151 NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGK----YRESALSLATRGGYTDIVELLLTREVDVNVYDWNG 226 (296)
T ss_pred ccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhh----hhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCC
Confidence 56899999999999999999999999999999999998877 67899999999999999999999999999999999
Q ss_pred CcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHH
Q 041054 84 RIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNI 145 (298)
Q Consensus 84 ~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~l 145 (298)
-|||-+|++.+|.+|++.|+..|++ .+..+..|.+++..|+..|+..+...|
T Consensus 227 gTpLlyAvrgnhvkcve~Ll~sGAd----------~t~e~dsGy~~mdlAValGyr~Vqqvi 278 (296)
T KOG0502|consen 227 GTPLLYAVRGNHVKCVESLLNSGAD----------VTQEDDSGYWIMDLAVALGYRIVQQVI 278 (296)
T ss_pred CceeeeeecCChHHHHHHHHhcCCC----------cccccccCCcHHHHHHHhhhHHHHHHH
Confidence 9999999999999999999999999 466778899999999999988544333
No 20
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.85 E-value=1.8e-21 Score=183.20 Aligned_cols=208 Identities=23% Similarity=0.254 Sum_probs=139.5
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCC----------------------------------CC
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGG----------------------------------YG 47 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~----------------------------------~~ 47 (298)
|+.+||..|+.|.||||+||..++.+..+.|++.|+++...+.. .+
T Consensus 143 ~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~ 222 (929)
T KOG0510|consen 143 YGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDN 222 (929)
T ss_pred hcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhccccccc
Confidence 67899999999999999999999999889999999998766641 12
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCC---------------CcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCC
Q 041054 48 CPGSTPLHLAARGGSIDCIRELLAWGAD---------------RLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVW 112 (298)
Q Consensus 48 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad---------------~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~ 112 (298)
..|.||||.|+..|+.++++.+|+.|+. ++..|.+|.||||+|++.|+.++++.|+..|++
T Consensus 223 n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~---- 298 (929)
T KOG0510|consen 223 NEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS---- 298 (929)
T ss_pred CCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc----
Confidence 3556666666666666666666665432 223455666666666666666666666666666
Q ss_pred CCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCCCCCCCCCCCCCCCcccccccCCCcccccccccccceEEeCCC
Q 041054 113 PSPLKFISELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCG 192 (298)
Q Consensus 113 ~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CG 192 (298)
++.++.++.+|||.|+..|+...++.|++..+......++....+..+++. .-|
T Consensus 299 ------I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa--------------------~~g 352 (929)
T KOG0510|consen 299 ------INSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAA--------------------KSG 352 (929)
T ss_pred ------ccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhh--------------------hcC
Confidence 566666666677777766666666666553332221111111111111111 249
Q ss_pred chhHHHHHHHHhhcCCC----CCCCCCCCCCCCcccccccceeEEEEeecC
Q 041054 193 HQMCAQCTLALCCHNKP----NPTTACLTPPVCPFCRSTIAHLVVVKIENQ 239 (298)
Q Consensus 193 H~~C~~C~~~l~~~~~~----~~~~~~~~~~~Cp~cr~~I~~~~~~~~~~~ 239 (298)
|..|++-++..++.-.. ..-..|++|.+-......++++++.+....
T Consensus 353 H~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I 403 (929)
T KOG0510|consen 353 HDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADI 403 (929)
T ss_pred HHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence 99999999998887653 233339999999999999999988876554
No 21
>PHA03095 ankyrin-like protein; Provisional
Probab=99.85 E-value=1.7e-21 Score=183.96 Aligned_cols=217 Identities=21% Similarity=0.194 Sum_probs=144.7
Q ss_pred CCCCcccCCCCCCcHHHHHHHcC-ChHHHHHHHhCCCCccccCCCCCCCCChHHHHHH--HcCCHHHHHHHHHcCCCCcc
Q 041054 2 YARFVNIRDGRGATPLHLAARQR-RPECVHILLDSGALVCASTGGYGCPGSTPLHLAA--RGGSIDCIRELLAWGADRLH 78 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g-~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~--~~g~~~~v~~Ll~~gad~~~ 78 (298)
.|+++|.+|..|+||||+|+..+ +.+++++|+++|++++..+. .|+||||+|+ ..++.+++++|+++|++++.
T Consensus 72 ~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~----~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~ 147 (471)
T PHA03095 72 AGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDK----VGRTPLHVYLSGFNINPKVIRLLLRKGADVNA 147 (471)
T ss_pred CCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCC----CCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCc
Confidence 58899999999999999999999 59999999999999999887 8999999999 56789999999999999999
Q ss_pred cccCCCcHHHHHHhcC--cHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHh--hhHHHHHHHhc-CCCCCC
Q 041054 79 RDVSGRIPYAVALKHK--HGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALME--ANKEREKNILK-GTAYSL 153 (298)
Q Consensus 79 ~d~~g~tpL~~A~~~~--~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~--~~~~~~~~ll~-~~~~~~ 153 (298)
+|..|.||||+|+..+ +.+++++|+++|+++.. .+..|.|+||.++.. +..++++.|++ |.+...
T Consensus 148 ~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~----------~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~ 217 (471)
T PHA03095 148 LDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYA----------VDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAA 217 (471)
T ss_pred cCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcc----------cCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcc
Confidence 9999999999999876 67899999999998543 345556666665543 33444444433 222211
Q ss_pred CCCCCCCCCCcccccccCCC---cccccccccccceE------------EeCCCchhHHHHHHHHhhcCCCCCCCC-CCC
Q 041054 154 PSPSHSDVGADDNISEASDT---ELCCICFEQVCTIE------------VQDCGHQMCAQCTLALCCHNKPNPTTA-CLT 217 (298)
Q Consensus 154 ~~p~~~~~~~~~~~~~~~~~---~~C~IC~~~~~~~~------------~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~ 217 (298)
.. ..+.+..+.+..... .......+...++. ..-.|+..++..++..+++.+..+..+ ||+
T Consensus 218 ~d---~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl 294 (471)
T PHA03095 218 TD---MLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPL 294 (471)
T ss_pred cC---CCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHH
Confidence 00 000000000000000 00000000000000 011356666777777777666555555 777
Q ss_pred CCCCcccccccceeEEEE
Q 041054 218 PPVCPFCRSTIAHLVVVK 235 (298)
Q Consensus 218 ~~~Cp~cr~~I~~~~~~~ 235 (298)
+.++..++..|+++++..
T Consensus 295 ~~A~~~~~~~~v~~LL~~ 312 (471)
T PHA03095 295 SLMVRNNNGRAVRAALAK 312 (471)
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 777777777777766654
No 22
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.85 E-value=4.7e-21 Score=161.91 Aligned_cols=122 Identities=21% Similarity=0.255 Sum_probs=109.4
Q ss_pred CCCCcccCC-CCCCcHHHHHHHc---CChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHH--cCCHHHHHHHHHcCCC
Q 041054 2 YARFVNIRD-GRGATPLHLAARQ---RRPECVHILLDSGALVCASTGGYGCPGSTPLHLAAR--GGSIDCIRELLAWGAD 75 (298)
Q Consensus 2 ~~~~vn~~d-~~G~TpLh~Aa~~---g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~--~g~~~~v~~Ll~~gad 75 (298)
.|+++|.++ ..|+||||+|+.. ++.+++++|+++|+++|..+. .|.||||+|+. .++.+++++|+++|++
T Consensus 75 ~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~----~G~TpLh~a~~~~~~~~~iv~~Li~~gad 150 (209)
T PHA02859 75 NGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDE----DGKNLLHMYMCNFNVRINVIKLLIDSGVS 150 (209)
T ss_pred CCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCC----CCCCHHHHHHHhccCCHHHHHHHHHcCCC
Confidence 478999997 4899999998864 479999999999999999887 89999999986 4689999999999999
Q ss_pred CcccccCCCcHHHH-HHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhh
Q 041054 76 RLHRDVSGRIPYAV-ALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEA 137 (298)
Q Consensus 76 ~~~~d~~g~tpL~~-A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~ 137 (298)
++.+|..|.||||. |+..++.+++++|+++|++ ++.+|..|+|||++|..++
T Consensus 151 in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gad----------i~~~d~~g~tpl~la~~~~ 203 (209)
T PHA02859 151 FLNKDFDNNNILYSYILFHSDKKIFDFLTSLGID----------INETNKSGYNCYDLIKFRN 203 (209)
T ss_pred cccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCC----------CCCCCCCCCCHHHHHhhhh
Confidence 99999999999995 5678899999999999998 4667889999999998765
No 23
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.85 E-value=5e-21 Score=185.95 Aligned_cols=137 Identities=17% Similarity=0.197 Sum_probs=108.5
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCC--hHHHHHHHhCCCCccccCCCCCCCCChHHHHH----------------------
Q 041054 2 YARFVNIRDGRGATPLHLAARQRR--PECVHILLDSGALVCASTGGYGCPGSTPLHLA---------------------- 57 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~--~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A---------------------- 57 (298)
.|+++|.+|..|+||||+|+..|+ .++|++||++||++|.++. .|+||||+|
T Consensus 201 ~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~----~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n 276 (764)
T PHA02716 201 NGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCV----NGMSPIMTYIINIDNINPEITNIYIESLDGN 276 (764)
T ss_pred cCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCC----CCCCHHHHHHHhhhccCHHHHHHHHHhcccc
Confidence 467888888888888888888885 4888888888888888776 788888864
Q ss_pred ---------------HHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHh--cCcHHHHHHhccCCCCCCCCCCChhhhh
Q 041054 58 ---------------ARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALK--HKHGACAALLNPASAEPLVWPSPLKFIS 120 (298)
Q Consensus 58 ---------------~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~--~~~~~~~~~Ll~~ga~~~~~~~~~~~~~ 120 (298)
+..|+.+++++|++.|++++.+|..|+||||+|+. .++.+++++|+++|++ ++
T Consensus 277 ~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD----------IN 346 (764)
T PHA02716 277 KVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND----------LN 346 (764)
T ss_pred ccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC----------Cc
Confidence 34577888888888888888888888888888764 4577888888888887 46
Q ss_pred HhhHHHHHHHHHHHHh--------------hhHHHHHHHhc-CCCCC
Q 041054 121 ELNQEAKALLENALME--------------ANKEREKNILK-GTAYS 152 (298)
Q Consensus 121 ~~~~~~~t~L~~A~~~--------------~~~~~~~~ll~-~~~~~ 152 (298)
.+|..|.||||+|+.. ++.+++++|++ |+++.
T Consensus 347 ~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn 393 (764)
T PHA02716 347 EPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADIT 393 (764)
T ss_pred cCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCC
Confidence 6788999999998652 46788877766 44443
No 24
>PHA02946 ankyin-like protein; Provisional
Probab=99.85 E-value=5.9e-21 Score=178.62 Aligned_cols=146 Identities=21% Similarity=0.190 Sum_probs=117.4
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCcc-
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG--SIDCIRELLAWGADRLH- 78 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g--~~~~v~~Ll~~gad~~~- 78 (298)
.|+++|.+|..|+||||+|+..|+.++|++||++|+++|.++. .|+||||+|+..+ ..+++++|+++|++++.
T Consensus 61 ~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~----~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~ 136 (446)
T PHA02946 61 RGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDK----QHKTPLYYLSGTDDEVIERINLLVQYGAKINNS 136 (446)
T ss_pred CcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCC----CCCCHHHHHHHcCCchHHHHHHHHHcCCCcccc
Confidence 5789999999999999999999999999999999999998887 8999999998865 47899999999999985
Q ss_pred cccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCC----CChh---------------------hhhHhhHHHHHHHHHH
Q 041054 79 RDVSGRIPYAVALKHKHGACAALLNPASAEPLVWP----SPLK---------------------FISELNQEAKALLENA 133 (298)
Q Consensus 79 ~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~----~~~~---------------------~~~~~~~~~~t~L~~A 133 (298)
.|..|.|||+ |+..++.+++++|++.|+++.... +|.+ .++..|.+|.||||+|
T Consensus 137 ~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~A 215 (446)
T PHA02946 137 VDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIV 215 (446)
T ss_pred cCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 5788888886 556678888888888887754332 1111 1234577888999999
Q ss_pred HHhh--hHHHHHHHhcCCCCC
Q 041054 134 LMEA--NKEREKNILKGTAYS 152 (298)
Q Consensus 134 ~~~~--~~~~~~~ll~~~~~~ 152 (298)
+..+ +.+++++|+.++++.
T Consensus 216 a~~~~~~~~iv~lLl~gadin 236 (446)
T PHA02946 216 CSKTVKNVDIINLLLPSTDVN 236 (446)
T ss_pred HHcCCCcHHHHHHHHcCCCCC
Confidence 8875 677888877776654
No 25
>PHA02798 ankyrin-like protein; Provisional
Probab=99.84 E-value=4e-21 Score=182.40 Aligned_cols=134 Identities=22% Similarity=0.214 Sum_probs=117.7
Q ss_pred CCCCcccCCCCCCcHHHHHHHc-----CChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcC---CHHHHHHHHHcC
Q 041054 2 YARFVNIRDGRGATPLHLAARQ-----RRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG---SIDCIRELLAWG 73 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~-----g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g---~~~~v~~Ll~~g 73 (298)
+|+++|.+|..|.||||.|+.+ ++.+++++|+++|+++|.++. .|+||||+|+..+ +.+++++|+++|
T Consensus 60 ~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~----~G~TpLh~a~~~~~~~~~~iv~~Ll~~G 135 (489)
T PHA02798 60 LGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNS----DGETPLYCLLSNGYINNLEILLFMIENG 135 (489)
T ss_pred CCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCC----CcCcHHHHHHHcCCcChHHHHHHHHHcC
Confidence 6899999999999999999864 678999999999999999988 8999999999975 789999999999
Q ss_pred CCCcccccCCCcHHHHHHhcCc---HHHHHHhccCCCCCCCCCCChhhhhHh-hHHHHHHHHHHHHhh----hHHHHHHH
Q 041054 74 ADRLHRDVSGRIPYAVALKHKH---GACAALLNPASAEPLVWPSPLKFISEL-NQEAKALLENALMEA----NKEREKNI 145 (298)
Q Consensus 74 ad~~~~d~~g~tpL~~A~~~~~---~~~~~~Ll~~ga~~~~~~~~~~~~~~~-~~~~~t~L~~A~~~~----~~~~~~~l 145 (298)
++++.+|..|.||||+|+..++ .+++++|+++|+++ +.. +..+.||||.++..+ +.+++++|
T Consensus 136 advn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi----------n~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~L 205 (489)
T PHA02798 136 ADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI----------NTHNNKEKYDTLHCYFKYNIDRIDADILKLF 205 (489)
T ss_pred CCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCc----------ccccCcCCCcHHHHHHHhccccCCHHHHHHH
Confidence 9999999999999999999988 99999999999984 333 346788999887653 67778777
Q ss_pred hcCC
Q 041054 146 LKGT 149 (298)
Q Consensus 146 l~~~ 149 (298)
++.+
T Consensus 206 i~~G 209 (489)
T PHA02798 206 VDNG 209 (489)
T ss_pred HHCC
Confidence 6643
No 26
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.84 E-value=9.7e-21 Score=183.92 Aligned_cols=209 Identities=13% Similarity=0.115 Sum_probs=150.9
Q ss_pred CCcccC-CCCCCcHHHHHHH--cCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCC--HHHHHHHHHcCCCCcc
Q 041054 4 RFVNIR-DGRGATPLHLAAR--QRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGS--IDCIRELLAWGADRLH 78 (298)
Q Consensus 4 ~~vn~~-d~~G~TpLh~Aa~--~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~--~~~v~~Ll~~gad~~~ 78 (298)
+++|.+ |..|.||||+|+. +++.++|++|+++|+++|.++. .|.||||+|+..|+ .++|++|+++||+++.
T Consensus 167 ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~----~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~ 242 (764)
T PHA02716 167 VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNN----HLITPLHTYLITGNVCASVIKKIIELGGDMDM 242 (764)
T ss_pred CCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCC----CCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCC
Confidence 789998 9999999999864 4678999999999999999887 89999999999995 5999999999999999
Q ss_pred cccCCCcHHHHHH-------------------------------------hcCcHHHHHHhccCCCCCCCCCCChhhhhH
Q 041054 79 RDVSGRIPYAVAL-------------------------------------KHKHGACAALLNPASAEPLVWPSPLKFISE 121 (298)
Q Consensus 79 ~d~~g~tpL~~A~-------------------------------------~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~ 121 (298)
+|..|+||||+|+ ..|+.+++++|+++|++ ++.
T Consensus 243 kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd----------IN~ 312 (764)
T PHA02716 243 KCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK----------LHY 312 (764)
T ss_pred CCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc----------eec
Confidence 9999999999763 34667788888888887 567
Q ss_pred hhHHHHHHHHHHHHh--hhHHHHHHHhcC-CCCCCCCCCCCCCCCcccccccCCCcccccccccccceEEeCCCchhHHH
Q 041054 122 LNQEAKALLENALME--ANKEREKNILKG-TAYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQ 198 (298)
Q Consensus 122 ~~~~~~t~L~~A~~~--~~~~~~~~ll~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~ 198 (298)
+|..|+||||+|+.. ++.+++++|++. +++.... ..+.+..+.+.. ..+.....+......+|..+..
T Consensus 313 kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD---~~G~TPLH~A~~------~lav~~~ld~~~~~~~~~eVVk 383 (764)
T PHA02716 313 KDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPD---NIGNTVLHTYLS------MLSVVNILDPETDNDIRLDVIQ 383 (764)
T ss_pred cCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCC---CCCCCHHHHHHH------hhhhhccccccccccChHHHHH
Confidence 788999999998754 467888877664 4433211 111111110000 0011111111122357888999
Q ss_pred HHHHHhhcCCCCCCCC-CCCCC-CCc---ccccccceeEEEE
Q 041054 199 CTLALCCHNKPNPTTA-CLTPP-VCP---FCRSTIAHLVVVK 235 (298)
Q Consensus 199 C~~~l~~~~~~~~~~~-~~~~~-~Cp---~cr~~I~~~~~~~ 235 (298)
.++..++........+ ||++. +|. .+...|+++++..
T Consensus 384 lLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~ 425 (764)
T PHA02716 384 CLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISD 425 (764)
T ss_pred HHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhC
Confidence 9999988887666666 89983 343 3456677666553
No 27
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.84 E-value=6.7e-22 Score=171.20 Aligned_cols=137 Identities=31% Similarity=0.366 Sum_probs=119.2
Q ss_pred CcccCCCCCCcHHHHHHHcCChHHHHHHHhCC-CCccccCCCC----------------------------------CCC
Q 041054 5 FVNIRDGRGATPLHLAARQRRPECVHILLDSG-ALVCASTGGY----------------------------------GCP 49 (298)
Q Consensus 5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g-a~~~~~~~~~----------------------------------~~~ 49 (298)
-||.-|.+|+|+||||+.++++++|+.||+.| .+++.++..- -..
T Consensus 260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~ 339 (452)
T KOG0514|consen 260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQH 339 (452)
T ss_pred HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhh
Confidence 37889999999999999999999999999986 4566555210 046
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccC-CCCCCCCCCChhhhhHhhHHHHH
Q 041054 50 GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPA-SAEPLVWPSPLKFISELNQEAKA 128 (298)
Q Consensus 50 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~t 128 (298)
|+|+||+|+.+|+.++|+.||..|||+|.+|.+|-|+|+.|+.+||.+|+++||.. +.+ +...|.+|.|
T Consensus 340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd----------~sLtD~DgST 409 (452)
T KOG0514|consen 340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCD----------ISLTDVDGST 409 (452)
T ss_pred cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCccc----------ceeecCCCch
Confidence 99999999999999999999999999999999999999999999999999999976 333 5678999999
Q ss_pred HHHHHHHhhhHHHHHHHhcCCCC
Q 041054 129 LLENALMEANKEREKNILKGTAY 151 (298)
Q Consensus 129 ~L~~A~~~~~~~~~~~ll~~~~~ 151 (298)
+|.+|+..++.++..+|....++
T Consensus 410 Al~IAleagh~eIa~mlYa~~n~ 432 (452)
T KOG0514|consen 410 ALSIALEAGHREIAVMLYAHMNI 432 (452)
T ss_pred hhhhHHhcCchHHHHHHHHHHHh
Confidence 99999999999998888766554
No 28
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.84 E-value=1.4e-21 Score=174.19 Aligned_cols=131 Identities=22% Similarity=0.201 Sum_probs=117.3
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV 81 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 81 (298)
.|++||....-.-|||..||..|+.++|++|+++|+|++..+. .|.|.||+|+.+|+.+++++|++.|||+|.++.
T Consensus 106 ~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~Ianr----hGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~ 181 (615)
T KOG0508|consen 106 RGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANR----HGHTCLMIACYKGHVDIAQYLLEQGADVNAKSY 181 (615)
T ss_pred hcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCccccc----CCCeeEEeeeccCchHHHHHHHHhCCCcchhcc
Confidence 3578888888888999999999999999999999999998888 899999999999999999999999999999999
Q ss_pred CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc
Q 041054 82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK 147 (298)
Q Consensus 82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~ 147 (298)
.|+|+||.+++.|+.+++++|+.+|+. ..+|..|.|||..|...+..+++..|++
T Consensus 182 kGNTALH~caEsG~vdivq~Ll~~ga~-----------i~~d~~GmtPL~~Aa~tG~~~iVe~L~~ 236 (615)
T KOG0508|consen 182 KGNTALHDCAESGSVDIVQLLLKHGAK-----------IDVDGHGMTPLLLAAVTGHTDIVERLLQ 236 (615)
T ss_pred cCchHHHhhhhcccHHHHHHHHhCCce-----------eeecCCCCchHHHHhhhcchHHHHHHhc
Confidence 999999999999999999999999987 4567779999999999999888888775
No 29
>PHA02798 ankyrin-like protein; Provisional
Probab=99.84 E-value=8.7e-21 Score=180.09 Aligned_cols=149 Identities=16% Similarity=0.112 Sum_probs=126.8
Q ss_pred CCCCcccCCCCCCcHHHHHHHcC---ChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCC---HHHHHHHHHcCCC
Q 041054 2 YARFVNIRDGRGATPLHLAARQR---RPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGS---IDCIRELLAWGAD 75 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g---~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~---~~~v~~Ll~~gad 75 (298)
+|+++|.+|..|+||||+|+..+ +.+++++|+++|++++..+. .|.||||+|+..++ .+++++|+++|++
T Consensus 98 ~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~----~g~tpL~~a~~~~~~~~~~vv~~Ll~~gad 173 (489)
T PHA02798 98 NGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDK----DGFTMLQVYLQSNHHIDIEIIKLLLEKGVD 173 (489)
T ss_pred CCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCC----CCCcHHHHHHHcCCcchHHHHHHHHHhCCC
Confidence 58999999999999999999886 78999999999999999888 89999999999988 9999999999999
Q ss_pred Ccccc-cCCCcHHHHHHhc----CcHHHHHHhccCCCCCCCCCC----Ch-------------------------hhhhH
Q 041054 76 RLHRD-VSGRIPYAVALKH----KHGACAALLNPASAEPLVWPS----PL-------------------------KFISE 121 (298)
Q Consensus 76 ~~~~d-~~g~tpL~~A~~~----~~~~~~~~Ll~~ga~~~~~~~----~~-------------------------~~~~~ 121 (298)
++.++ ..|.||||.++.. ++.+++++|+++|+++..... +. ..++.
T Consensus 174 in~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~ 253 (489)
T PHA02798 174 INTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQ 253 (489)
T ss_pred cccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCC
Confidence 99885 4689999998764 478999999999998765321 10 02345
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhc-CCCCCCC
Q 041054 122 LNQEAKALLENALMEANKEREKNILK-GTAYSLP 154 (298)
Q Consensus 122 ~~~~~~t~L~~A~~~~~~~~~~~ll~-~~~~~~~ 154 (298)
+|..|.||||+|+..++.+++++|++ |+++...
T Consensus 254 ~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~ 287 (489)
T PHA02798 254 VDELGFNPLYYSVSHNNRKIFEYLLQLGGDINII 287 (489)
T ss_pred cCcCCccHHHHHHHcCcHHHHHHHHHcCCccccc
Confidence 78899999999999999998777654 8887653
No 30
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.84 E-value=1.1e-20 Score=166.38 Aligned_cols=130 Identities=19% Similarity=0.140 Sum_probs=111.9
Q ss_pred ccCCCCCCcH-HHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc-cCCC
Q 041054 7 NIRDGRGATP-LHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD-VSGR 84 (298)
Q Consensus 7 n~~d~~G~Tp-Lh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~ 84 (298)
-.+|..|+|+ ||.|+..|+.+++++|+++|++++.++...+..|.||||+|+..++.+++++|+++||+++.++ ..|.
T Consensus 26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~ 105 (300)
T PHA02884 26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKI 105 (300)
T ss_pred hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCC
Confidence 4578888885 5566677899999999999999998753223379999999999999999999999999999864 5799
Q ss_pred cHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHh
Q 041054 85 IPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNIL 146 (298)
Q Consensus 85 tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll 146 (298)
||||+|+..++.+++++|+.+|++ ++.++..|.|||+.|+..++.+++.++.
T Consensus 106 TpLh~Aa~~~~~eivklLL~~GAd----------in~kd~~G~TpL~~A~~~~~~~~~~~~~ 157 (300)
T PHA02884 106 TPLYISVLHGCLKCLEILLSYGAD----------INIQTNDMVTPIELALMICNNFLAFMIC 157 (300)
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCC----------CCCCCCCCCCHHHHHHHhCChhHHHHhc
Confidence 999999999999999999999999 4667888999999999888777665443
No 31
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.84 E-value=5.3e-21 Score=181.77 Aligned_cols=217 Identities=13% Similarity=0.040 Sum_probs=149.6
Q ss_pred CCCCcccCCCCCCcHHHHHHH------cCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHc---CCHHHHHHHHHc
Q 041054 2 YARFVNIRDGRGATPLHLAAR------QRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARG---GSIDCIRELLAW 72 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~------~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~---g~~~~v~~Ll~~ 72 (298)
.|++||.++ .+.||||.|+. .++.++|++||++|+++|..+. .|.||||.|+.. ++.+++++|+++
T Consensus 59 ~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~----~g~tpL~~a~~~~~~~~~eiv~~Ll~~ 133 (494)
T PHA02989 59 NGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTF----NGVSPIVCFIYNSNINNCDMLRFLLSK 133 (494)
T ss_pred cCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCC----CCCcHHHHHHHhcccCcHHHHHHHHHC
Confidence 588999887 57999998875 4788999999999999998887 799999988765 678999999999
Q ss_pred CCCC-cccccCCCcHHHHHHhc--CcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhh----hHHHHHHH
Q 041054 73 GADR-LHRDVSGRIPYAVALKH--KHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEA----NKEREKNI 145 (298)
Q Consensus 73 gad~-~~~d~~g~tpL~~A~~~--~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~----~~~~~~~l 145 (298)
|||+ +.+|..|+||||+|+.. ++.+++++|+++|+++.. ..+..+.|||+.|+..+ +.+++++|
T Consensus 134 Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~---------~~~~~g~tpL~~a~~~~~~~~~~~iv~~L 204 (494)
T PHA02989 134 GINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFE---------KTSLYGLTPMNIYLRNDIDVISIKVIKYL 204 (494)
T ss_pred CCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc---------cccccCCChHHHHHhcccccccHHHHHHH
Confidence 9999 78899999999998754 578999999999998432 14667889999887654 88877776
Q ss_pred hc-CCCCCCCCCCCCCCCCcccccccCCC---ccccc---ccccccceEE------------eCCCchhHHHHHHHHhhc
Q 041054 146 LK-GTAYSLPSPSHSDVGADDNISEASDT---ELCCI---CFEQVCTIEV------------QDCGHQMCAQCTLALCCH 206 (298)
Q Consensus 146 l~-~~~~~~~~p~~~~~~~~~~~~~~~~~---~~C~I---C~~~~~~~~~------------~~CGH~~C~~C~~~l~~~ 206 (298)
++ |++....... .....+....... ..+.. -+....++.. ...||...+..++..+++
T Consensus 205 l~~Ga~vn~~~~~---~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gad 281 (494)
T PHA02989 205 IKKGVNIETNNNG---SESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDD 281 (494)
T ss_pred HhCCCCccccCCc---cccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCC
Confidence 55 5554432210 0000000000000 00000 0000011111 113677778888888888
Q ss_pred CCCCCCCC-CCCCCCCcccccccceeEEEE
Q 041054 207 NKPNPTTA-CLTPPVCPFCRSTIAHLVVVK 235 (298)
Q Consensus 207 ~~~~~~~~-~~~~~~Cp~cr~~I~~~~~~~ 235 (298)
.+..+..+ ||++.++..++..|+++++..
T Consensus 282 in~~d~~G~TpL~~A~~~~~~~iv~~LL~~ 311 (494)
T PHA02989 282 IYNVSKDGDTVLTYAIKHGNIDMLNRILQL 311 (494)
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 77776666 889999888888888877754
No 32
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.83 E-value=3.4e-21 Score=155.05 Aligned_cols=129 Identities=20% Similarity=0.236 Sum_probs=106.4
Q ss_pred CcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCC-------ccccCCCCCCCCChHHHHHHHcCCH---HHHHHHHHcCC
Q 041054 5 FVNIRDGRGATPLHLAARQRRPECVHILLDSGAL-------VCASTGGYGCPGSTPLHLAARGGSI---DCIRELLAWGA 74 (298)
Q Consensus 5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~-------~~~~~~~~~~~g~TpLh~A~~~g~~---~~v~~Ll~~ga 74 (298)
+.+.+|..|.||||+|++.|+. +.+++..+.. ++..+. .|.||||+|+..|+. +++++|++.|+
T Consensus 9 ~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~----~g~t~Lh~a~~~~~~~~~e~v~~Ll~~ga 82 (154)
T PHA02736 9 FASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNR----HGKQCVHIVSNPDKADPQEKLKLLMEWGA 82 (154)
T ss_pred HHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcC----CCCEEEEeecccCchhHHHHHHHHHHcCC
Confidence 4678899999999999999984 3444333222 122333 899999999999987 46899999999
Q ss_pred CCcccc-cCCCcHHHHHHhcCcHHHHHHhcc-CCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054 75 DRLHRD-VSGRIPYAVALKHKHGACAALLNP-ASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT 149 (298)
Q Consensus 75 d~~~~d-~~g~tpL~~A~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~ 149 (298)
+++.+| ..|.||||+|+..++.+++++|+. .|++ ++..+..|.|||++|...++.+++++|++.+
T Consensus 83 din~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d----------~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~g 149 (154)
T PHA02736 83 DINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVN----------MEILNYAFKTPYYVACERHDAKMMNILRAKG 149 (154)
T ss_pred CccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC----------CccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 999998 489999999999999999999997 4887 4667889999999999999999888877643
No 33
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.83 E-value=1.2e-20 Score=177.82 Aligned_cols=136 Identities=32% Similarity=0.384 Sum_probs=120.6
Q ss_pred CcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHH-cC-CCCcccccC
Q 041054 5 FVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLA-WG-ADRLHRDVS 82 (298)
Q Consensus 5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~-~g-ad~~~~d~~ 82 (298)
.||..|.+|.||||+|++.|+++.|+.|+..|++++.++. ++.||||.||..|+.++|+.||+ .| ..++..|-.
T Consensus 265 lv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~----d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~ 340 (929)
T KOG0510|consen 265 LVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNK----DEESPLHFAAIYGRINTVERLLQESDTRLLNESDLH 340 (929)
T ss_pred HhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCC----CCCCchHHHHHcccHHHHHHHHhCcCcccccccccc
Confidence 4788999999999999999999999999999999999987 89999999999999999999999 53 456888999
Q ss_pred CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHH-hcCCCC
Q 041054 83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNI-LKGTAY 151 (298)
Q Consensus 83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~l-l~~~~~ 151 (298)
|+||||+|++.||..++++|++.|+.... ..+.|.+|.|+||.|+..++...+..| .+|+++
T Consensus 341 g~tpLHlaa~~gH~~v~qlLl~~GA~~~~-------~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I 403 (929)
T KOG0510|consen 341 GMTPLHLAAKSGHDRVVQLLLNKGALFLN-------MSEADSDGNTALHLAAKYGNTSAVQKLISHGADI 403 (929)
T ss_pred CCCchhhhhhcCHHHHHHHHHhcChhhhc-------ccccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence 99999999999999999999999998431 115599999999999999999866655 556665
No 34
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.83 E-value=1e-20 Score=186.46 Aligned_cols=203 Identities=21% Similarity=0.206 Sum_probs=155.5
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCCh-HHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcC-CHHHHHHHHHcCCCCccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRP-ECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG-SIDCIRELLAWGADRLHR 79 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~-~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g-~~~~v~~Ll~~gad~~~~ 79 (298)
.|.++|..|..|+||||+|+..++. +++++|++.|++++..+. .|.||||+|+..| +.+++++|+..|++++..
T Consensus 262 ~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~----~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~ 337 (682)
T PHA02876 262 AGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNI----KGETPLYLMAKNGYDTENIRTLIMLGADVNAA 337 (682)
T ss_pred CCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCC----CCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCc
Confidence 3678899999999999999999986 689999999999998887 8999999999999 699999999999999999
Q ss_pred ccCCCcHHHHHHhc-CcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC-CCCCCCCC
Q 041054 80 DVSGRIPYAVALKH-KHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT-AYSLPSPS 157 (298)
Q Consensus 80 d~~g~tpL~~A~~~-~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~-~~~~~~p~ 157 (298)
|..|.||||+|+.. ++.+++++|+++|++ ++..+..|.||||+|+..++.+++++|++.+ +......
T Consensus 338 d~~g~TpLh~A~~~~~~~~iv~lLl~~gad----------in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~- 406 (682)
T PHA02876 338 DRLYITPLHQASTLDRNKDIVITLLELGAN----------VNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQ- 406 (682)
T ss_pred ccCCCcHHHHHHHhCCcHHHHHHHHHcCCC----------CccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCC-
Confidence 99999999999985 578899999999998 4667888999999999999999888887643 3221110
Q ss_pred CCCCCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCcc-cccccceeEEEE
Q 041054 158 HSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPF-CRSTIAHLVVVK 235 (298)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~-cr~~I~~~~~~~ 235 (298)
...+..+ -.+| ..++..+...++..++..+..+..+ ||++.++.. |+..|+++++..
T Consensus 407 --~g~T~Lh---------~A~~----------~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~ 465 (682)
T PHA02876 407 --KIGTALH---------FALC----------GTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDN 465 (682)
T ss_pred --CCCchHH---------HHHH----------cCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHC
Confidence 0000000 0000 1123346677777777766666666 888888863 566788877766
Q ss_pred eecCC
Q 041054 236 IENQE 240 (298)
Q Consensus 236 ~~~~~ 240 (298)
....+
T Consensus 466 Gad~n 470 (682)
T PHA02876 466 GADVN 470 (682)
T ss_pred CCCCC
Confidence 54443
No 35
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.82 E-value=2.5e-20 Score=151.86 Aligned_cols=106 Identities=22% Similarity=0.245 Sum_probs=96.5
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHH---HHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPEC---VHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLA-WGADRL 77 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~---v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~ 77 (298)
.+.+++.+|..|+||||+|+..|+.+. +++|+++|+++|.++.. .|.||||+|+..++.+++++|+. .|++++
T Consensus 46 ~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~---~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~ 122 (166)
T PHA02743 46 DGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELG---TGNTLLHIAASTKNYELAEWLCRQLGVNLG 122 (166)
T ss_pred cchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCC---CCCcHHHHHHHhCCHHHHHHHHhccCCCcc
Confidence 356788899999999999999998654 79999999999988631 69999999999999999999996 799999
Q ss_pred ccccCCCcHHHHHHhcCcHHHHHHhccCCCCCC
Q 041054 78 HRDVSGRIPYAVALKHKHGACAALLNPASAEPL 110 (298)
Q Consensus 78 ~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~ 110 (298)
.+|..|.||||+|+..++.+++++|+.+|++..
T Consensus 123 ~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~ 155 (166)
T PHA02743 123 AINYQHETAYHIAYKMRDRRMMEILRANGAVCD 155 (166)
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999853
No 36
>PHA02946 ankyin-like protein; Provisional
Probab=99.82 E-value=5.5e-20 Score=172.09 Aligned_cols=215 Identities=13% Similarity=0.069 Sum_probs=135.1
Q ss_pred CCCCcccCCCCCCcHHHHHHHcC--ChHHHHHHHhCCCCcccc-CC----------------------------CCCCCC
Q 041054 2 YARFVNIRDGRGATPLHLAARQR--RPECVHILLDSGALVCAS-TG----------------------------GYGCPG 50 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g--~~~~v~~Ll~~ga~~~~~-~~----------------------------~~~~~g 50 (298)
.|+++|.+|..|+||||+|+..+ ..+++++|+++|++++.. +. ..|..|
T Consensus 94 ~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G 173 (446)
T PHA02946 94 HGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFG 173 (446)
T ss_pred CcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCC
Confidence 57888889999999999888765 378888888888888742 22 112356
Q ss_pred ChHHHHHHHcC--CHHHHHHHHHcCCCCcccccCCCcHHHHHHhcC--cHHHHHHhccCCCCCCCCCCChhhhhHhhHHH
Q 041054 51 STPLHLAARGG--SIDCIRELLAWGADRLHRDVSGRIPYAVALKHK--HGACAALLNPASAEPLVWPSPLKFISELNQEA 126 (298)
Q Consensus 51 ~TpLh~A~~~g--~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~--~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~ 126 (298)
+||||+|+..+ +.+++++|+++|++++.+|..|.||||+|+..+ +.+++++|++ |++ ++.+|..|
T Consensus 174 ~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gad----------in~~d~~G 242 (446)
T PHA02946 174 KNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STD----------VNKQNKFG 242 (446)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCC----------CCCCCCCC
Confidence 66666665533 356677777777777777777777777777664 5667777664 565 56678899
Q ss_pred HHHHHHHHHhhhH-HHHHHHhcCCCCCCCCCCCCCCCCcccccccCCCccccccccc------ccceEEeCCCchhHHHH
Q 041054 127 KALLENALMEANK-EREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICFEQ------VCTIEVQDCGHQMCAQC 199 (298)
Q Consensus 127 ~t~L~~A~~~~~~-~~~~~ll~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~------~~~~~~~~CGH~~C~~C 199 (298)
.||||+|+..++. +++++|+..++.....+... ...........+.... .+-....--||..++..
T Consensus 243 ~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~-------a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~ 315 (446)
T PHA02946 243 DSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNI-------CIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKY 315 (446)
T ss_pred CCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHH-------HHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHH
Confidence 9999999998874 67777766544221000000 0000000000001111 11111112488889998
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEEeecCC
Q 041054 200 TLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQE 240 (298)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~~~~~~ 240 (298)
++..... ..||++.+.-.....++++++......+
T Consensus 316 Ll~~~~~------~~t~L~~A~~~~~~~~v~~Ll~~ga~~n 350 (446)
T PHA02946 316 LLDNDII------CEDAMYYAVLSEYETMVDYLLFNHFSVD 350 (446)
T ss_pred HHHCCCc------cccHHHHHHHhCHHHHHHHHHHCCCCCC
Confidence 8875332 2489999999999999998887654433
No 37
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.82 E-value=3.6e-20 Score=176.10 Aligned_cols=106 Identities=18% Similarity=0.259 Sum_probs=72.3
Q ss_pred CCCCcccCCCCCCcHHHHHHHc---CChHHHHHHHhCCCCc-cccCCCCCCCCChHHHHHHHc--CCHHHHHHHHHcCCC
Q 041054 2 YARFVNIRDGRGATPLHLAARQ---RRPECVHILLDSGALV-CASTGGYGCPGSTPLHLAARG--GSIDCIRELLAWGAD 75 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~---g~~~~v~~Ll~~ga~~-~~~~~~~~~~g~TpLh~A~~~--g~~~~v~~Ll~~gad 75 (298)
+|+++|.+|..|+||||.|+.. ++.++|++|+++|+++ +..+. .|+||||+|+.. ++.++|++|+++|++
T Consensus 97 ~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~----~g~tpLh~a~~~~~~~~~iv~~Ll~~Gad 172 (494)
T PHA02989 97 FGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNS----RGYNLLHMYLESFSVKKDVIKILLSFGVN 172 (494)
T ss_pred CCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCC----CCCCHHHHHHHhccCCHHHHHHHHHcCCC
Confidence 5677777777777887776654 5677777777777777 55555 677777776543 466777777777777
Q ss_pred Ccc-cccCCCcHHHHHHhcC----cHHHHHHhccCCCCCCC
Q 041054 76 RLH-RDVSGRIPYAVALKHK----HGACAALLNPASAEPLV 111 (298)
Q Consensus 76 ~~~-~d~~g~tpL~~A~~~~----~~~~~~~Ll~~ga~~~~ 111 (298)
++. .+..|.||||+|+..+ +.+++++|+++|+++..
T Consensus 173 i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~ 213 (494)
T PHA02989 173 LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIET 213 (494)
T ss_pred ccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccc
Confidence 766 4556667766665543 56666666666666543
No 38
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.82 E-value=1.9e-20 Score=184.63 Aligned_cols=136 Identities=21% Similarity=0.180 Sum_probs=115.4
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHH-----------
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELL----------- 70 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll----------- 70 (298)
.|+++|.+|..|+||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..++.+++++|+
T Consensus 167 ~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~----~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~ 242 (682)
T PHA02876 167 GGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIAL----DDLSVLECAVDSKNIDTIKAIIDNRSNINKNDL 242 (682)
T ss_pred CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCC----CCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcH
Confidence 5789999999999999999999999999999999999998877 7899999999988877766554
Q ss_pred ------------------HcCCCCcccccCCCcHHHHHHhcCcH-HHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHH
Q 041054 71 ------------------AWGADRLHRDVSGRIPYAVALKHKHG-ACAALLNPASAEPLVWPSPLKFISELNQEAKALLE 131 (298)
Q Consensus 71 ------------------~~gad~~~~d~~g~tpL~~A~~~~~~-~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~ 131 (298)
+.|++++..|..|.||||+|+..++. +++++|++.|++ ++..+..|.||||
T Consensus 243 ~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gad----------in~~d~~g~TpLh 312 (682)
T PHA02876 243 SLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGAD----------VNAKNIKGETPLY 312 (682)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCC----------CCCcCCCCCCHHH
Confidence 55667888888999999999999885 689999999998 4566788999999
Q ss_pred HHHHhh-hHHHHHHHhc-CCCC
Q 041054 132 NALMEA-NKEREKNILK-GTAY 151 (298)
Q Consensus 132 ~A~~~~-~~~~~~~ll~-~~~~ 151 (298)
+|+..+ ..+.+++|+. |++.
T Consensus 313 ~Aa~~g~~~~~v~~Ll~~gadi 334 (682)
T PHA02876 313 LMAKNGYDTENIRTLIMLGADV 334 (682)
T ss_pred HHHHhCCCHHHHHHHHHcCCCC
Confidence 999988 4676666654 4443
No 39
>PHA02795 ankyrin-like protein; Provisional
Probab=99.82 E-value=4.4e-20 Score=168.81 Aligned_cols=136 Identities=12% Similarity=0.046 Sum_probs=114.4
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCC--CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTG--GYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~--~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~ 79 (298)
+|++++.. ++.||||.|+..++.+++++|+++|++...... ..+..+.|++|.|+..++.+++++|+++||+++.+
T Consensus 140 ~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~k 217 (437)
T PHA02795 140 HGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQL 217 (437)
T ss_pred CCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcC
Confidence 68888874 448899999999999999999999875322211 11124789999999999999999999999999999
Q ss_pred ccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhh--------HHHHHHHhcCC
Q 041054 80 DVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEAN--------KEREKNILKGT 149 (298)
Q Consensus 80 d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~--------~~~~~~ll~~~ 149 (298)
|..|.||||+|+..|+.+++++|+++|++ ++.++..|.||||.|+..++ .+++++|++.+
T Consensus 218 D~~G~TpLh~Aa~~g~~eiVelLL~~GAd----------IN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~g 285 (437)
T PHA02795 218 DAGGRTLLYRAIYAGYIDLVSWLLENGAN----------VNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREP 285 (437)
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCCCC----------CCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCC
Confidence 99999999999999999999999999999 57788899999999999884 57888877643
No 40
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.82 E-value=5.1e-20 Score=184.49 Aligned_cols=132 Identities=20% Similarity=0.206 Sum_probs=108.5
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV 81 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 81 (298)
.|.++|..|..|+||||+|+..|+.+++++|+++|+++|..+. .|+||||+|+..|+.+++++|++.++..+. .
T Consensus 547 ~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~----~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~ 620 (823)
T PLN03192 547 AKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDA----NGNTALWNAISAKHHKIFRILYHFASISDP--H 620 (823)
T ss_pred CCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCC----CCCCHHHHHHHhCCHHHHHHHHhcCcccCc--c
Confidence 3677888888888888888888888888888888888887776 788888888888888888888887765543 3
Q ss_pred CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054 82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT 149 (298)
Q Consensus 82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~ 149 (298)
.+.++||+|+..|+.+++++|+++|++ ++..|.+|.||||.|+..++.+++++|++.+
T Consensus 621 ~~~~~L~~Aa~~g~~~~v~~Ll~~Gad----------in~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G 678 (823)
T PLN03192 621 AAGDLLCTAAKRNDLTAMKELLKQGLN----------VDSEDHQGATALQVAMAEDHVDMVRLLIMNG 678 (823)
T ss_pred cCchHHHHHHHhCCHHHHHHHHHCCCC----------CCCCCCCCCCHHHHHHHCCcHHHHHHHHHcC
Confidence 466888888888888888888888888 4667888999999999999999888887643
No 41
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.82 E-value=2.4e-20 Score=166.41 Aligned_cols=128 Identities=26% Similarity=0.297 Sum_probs=120.9
Q ss_pred CCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHH
Q 041054 9 RDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYA 88 (298)
Q Consensus 9 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~ 88 (298)
....|-+||-.|+..||+++|+.|+.+|+++|..+. ...|||--|+..|+.++|++|+++|+|++..|..|.|.||
T Consensus 80 e~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~----TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLm 155 (615)
T KOG0508|consen 80 ETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTR----TNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLM 155 (615)
T ss_pred cccCCCchhhHHhccCcHHHHHHHHHhcCccccccc----cCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEE
Confidence 356799999999999999999999999999998887 6789999999999999999999999999999999999999
Q ss_pred HHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCC
Q 041054 89 VALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTA 150 (298)
Q Consensus 89 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~ 150 (298)
+|+.+|+.+|+++|++.|++ ++.++..|.|+||.++..++.+++++|++.+.
T Consensus 156 Ia~ykGh~~I~qyLle~gAD----------vn~ks~kGNTALH~caEsG~vdivq~Ll~~ga 207 (615)
T KOG0508|consen 156 IACYKGHVDIAQYLLEQGAD----------VNAKSYKGNTALHDCAESGSVDIVQLLLKHGA 207 (615)
T ss_pred eeeccCchHHHHHHHHhCCC----------cchhcccCchHHHhhhhcccHHHHHHHHhCCc
Confidence 99999999999999999999 68889999999999999999999999987543
No 42
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.81 E-value=4e-20 Score=155.96 Aligned_cols=120 Identities=30% Similarity=0.335 Sum_probs=110.6
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS 82 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~ 82 (298)
..|+|.-|.+|.+|||+||+.||..+|+.||..|+.+|..+. ...||||+|+..|+.++|+.|++..+|+|..+..
T Consensus 24 ehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnm----gddtplhlaaahghrdivqkll~~kadvnavneh 99 (448)
T KOG0195|consen 24 EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNM----GDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEH 99 (448)
T ss_pred ccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccC----CCCcchhhhhhcccHHHHHHHHHHhcccchhhcc
Confidence 357899999999999999999999999999999999998876 4679999999999999999999999999999999
Q ss_pred CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHh
Q 041054 83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALME 136 (298)
Q Consensus 83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~ 136 (298)
|+||||||+..|...+++-|+..|+- ++.-++.|.|||+.|.-.
T Consensus 100 gntplhyacfwgydqiaedli~~ga~----------v~icnk~g~tpldkakp~ 143 (448)
T KOG0195|consen 100 GNTPLHYACFWGYDQIAEDLISCGAA----------VNICNKKGMTPLDKAKPM 143 (448)
T ss_pred CCCchhhhhhhcHHHHHHHHHhccce----------eeecccCCCCchhhhchH
Confidence 99999999999999999999999997 566788888888887543
No 43
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.81 E-value=1.5e-19 Score=141.85 Aligned_cols=123 Identities=30% Similarity=0.285 Sum_probs=104.3
Q ss_pred CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Q 041054 4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSG 83 (298)
Q Consensus 4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g 83 (298)
..||.+|.+|.||||-|+.+||.++|+.|+..||+++.++. .||||||-|+.-.+.+++.+||++|+|+|......
T Consensus 88 n~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~----~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ 163 (228)
T KOG0512|consen 88 NHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTN----EGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGL 163 (228)
T ss_pred ccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccc----cCccchhhhhcccchhHHHHHHhccCccccccccc
Confidence 45899999999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred CcHHHHHHhcCcH-HHHHHhcc-CCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHH
Q 041054 84 RIPYAVALKHKHG-ACAALLNP-ASAEPLVWPSPLKFISELNQEAKALLENALMEANKE 140 (298)
Q Consensus 84 ~tpL~~A~~~~~~-~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~ 140 (298)
.||||+|+...+. ..+.+|+. .+..| ..++..+.|++.+|-+.+-..
T Consensus 164 ltpLhlaa~~rn~r~t~~~Ll~dryi~p----------g~~nn~eeta~~iARRT~~s~ 212 (228)
T KOG0512|consen 164 LTPLHLAAGNRNSRDTLELLLHDRYIHP----------GLKNNLEETAFDIARRTSMSH 212 (228)
T ss_pred chhhHHhhcccchHHHHHHHhhccccCh----------hhhcCccchHHHHHHHhhhhH
Confidence 9999999987654 44555544 34442 445677889998887775444
No 44
>PHA02917 ankyrin-like protein; Provisional
Probab=99.80 E-value=1.6e-19 Score=175.54 Aligned_cols=136 Identities=13% Similarity=0.096 Sum_probs=109.9
Q ss_pred CCCCcccCCCCCCcHHHHHHHcC-----------------------------------ChHHHHHHHhCCCCccccCCCC
Q 041054 2 YARFVNIRDGRGATPLHLAARQR-----------------------------------RPECVHILLDSGALVCASTGGY 46 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g-----------------------------------~~~~v~~Ll~~ga~~~~~~~~~ 46 (298)
.|++++.+|..|+||||+|+..| +.++|++|+++|+++|..+.
T Consensus 57 ~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~-- 134 (661)
T PHA02917 57 SGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCE-- 134 (661)
T ss_pred CCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCC--
Confidence 47888999999999999887654 45677778888888887776
Q ss_pred CCCCChHHHHHH--HcCCHHHHHHHHHcCCCCccccc---CC-----------CcHHHHHHh-----------cCcHHHH
Q 041054 47 GCPGSTPLHLAA--RGGSIDCIRELLAWGADRLHRDV---SG-----------RIPYAVALK-----------HKHGACA 99 (298)
Q Consensus 47 ~~~g~TpLh~A~--~~g~~~~v~~Ll~~gad~~~~d~---~g-----------~tpL~~A~~-----------~~~~~~~ 99 (298)
.|+||||+|+ ..|+.++|++|+++||+++.+|. .| .||||+|+. .++.+++
T Consensus 135 --~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv 212 (661)
T PHA02917 135 --NHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVV 212 (661)
T ss_pred --CCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHH
Confidence 7899998543 46889999999999998876553 23 489998875 4578899
Q ss_pred HHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhH--HHHHHHhcCCCC
Q 041054 100 ALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANK--EREKNILKGTAY 151 (298)
Q Consensus 100 ~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~--~~~~~ll~~~~~ 151 (298)
++|+++|++ ++.++.+|.||||+|+..++. +++++|++|++.
T Consensus 213 ~~Li~~Gad----------vn~~d~~G~TpLh~A~~~g~~~~eivk~Li~g~d~ 256 (661)
T PHA02917 213 KCLINHGIK----------PSSIDKNYCTALQYYIKSSHIDIDIVKLLMKGIDN 256 (661)
T ss_pred HHHHHCCCC----------cccCCCCCCcHHHHHHHcCCCcHHHHHHHHhCCcc
Confidence 999999988 577889999999999999974 799999988754
No 45
>PHA02741 hypothetical protein; Provisional
Probab=99.79 E-value=4.1e-19 Score=145.20 Aligned_cols=103 Identities=27% Similarity=0.325 Sum_probs=95.2
Q ss_pred CCCcccCCCCCCcHHHHHHHcCC----hHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCc
Q 041054 3 ARFVNIRDGRGATPLHLAARQRR----PECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLA-WGADRL 77 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~----~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~ 77 (298)
+++++.+|..|+||||+|+..|+ .+++++|+++|++++.++.. .|+||||+|+..++.+++++|++ .|++++
T Consensus 50 ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~---~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~ 126 (169)
T PHA02741 50 AAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEML---EGDTALHLAAHRRDHDLAEWLCCQPGIDLH 126 (169)
T ss_pred hhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcC---CCCCHHHHHHHcCCHHHHHHHHhCCCCCCC
Confidence 57899999999999999999999 58999999999999987631 69999999999999999999998 599999
Q ss_pred ccccCCCcHHHHHHhcCcHHHHHHhccCCCC
Q 041054 78 HRDVSGRIPYAVALKHKHGACAALLNPASAE 108 (298)
Q Consensus 78 ~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~ 108 (298)
..|..|+||||+|+..++.+++++|+++++.
T Consensus 127 ~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~ 157 (169)
T PHA02741 127 FCNADNKSPFELAIDNEDVAMMQILREIVAT 157 (169)
T ss_pred cCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999988664
No 46
>PHA02730 ankyrin-like protein; Provisional
Probab=99.79 E-value=6.3e-19 Score=168.50 Aligned_cols=210 Identities=14% Similarity=0.075 Sum_probs=155.5
Q ss_pred Ccc-cCCCCCCcHHHHHHHcC---ChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCC--CC
Q 041054 5 FVN-IRDGRGATPLHLAARQR---RPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG--SIDCIRELLAWGA--DR 76 (298)
Q Consensus 5 ~vn-~~d~~G~TpLh~Aa~~g---~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g--~~~~v~~Ll~~ga--d~ 76 (298)
++| .+|..|+||||+|+..+ +.++|++||++||+++..+. .|+||||+|+..+ +.++|++|++.|+ ++
T Consensus 32 ~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~----~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~ 107 (672)
T PHA02730 32 NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNN----EGLTPLGVYSKRKYVKSQIVHLLISSYSNASN 107 (672)
T ss_pred chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCC----CCCChHHHHHHcCCCcHHHHHHHHhcCCCCCc
Confidence 567 88999999999999997 59999999999999999887 8999999999976 7999999999965 55
Q ss_pred cccccCCCcHHHHHHh--cCcHHHHHHhcc-CCCCCCCCCCChhhhhHhh-HHHHHHHHHHHHhhhHHHHHHHhcCCCCC
Q 041054 77 LHRDVSGRIPYAVALK--HKHGACAALLNP-ASAEPLVWPSPLKFISELN-QEAKALLENALMEANKEREKNILKGTAYS 152 (298)
Q Consensus 77 ~~~d~~g~tpL~~A~~--~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~-~~~~t~L~~A~~~~~~~~~~~ll~~~~~~ 152 (298)
+..+..+.+||+.++. +++.+++++|+. .+++|... .+..+ ..+.+++..+...++.+++++|++.+...
T Consensus 108 ~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~------~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v 181 (672)
T PHA02730 108 ELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKN------TNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYS 181 (672)
T ss_pred ccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhh------hhhhccccchhhhhHhcCCCchHHHHHHHHcCCcc
Confidence 7788789999999888 899999999996 66774310 01111 26889999999999999999988865432
Q ss_pred CCCCCCCCCCCcccccccCCCccc--ccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCC--CCCcccccc
Q 041054 153 LPSPSHSDVGADDNISEASDTELC--CICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTP--PVCPFCRST 227 (298)
Q Consensus 153 ~~~p~~~~~~~~~~~~~~~~~~~C--~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~--~~Cp~cr~~ 227 (298)
. +..-. ....+...| ..+..-..... ..-.+.-.+.+++..+++.+..+..+ ||+| .+|...+.+
T Consensus 182 ~----g~~~~-----~~~~~~~~c~~~l~~~il~~~~-~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~e 251 (672)
T PHA02730 182 T----GYVFR-----SCMYDSDRCKNSLHYYILSHRE-SESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIE 251 (672)
T ss_pred c----ccccc-----cccccCCccchhHHHHHHhhhh-hhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHH
Confidence 1 11000 001122344 11100000000 12245669999999999988777777 9998 577666689
Q ss_pred cceeEEE
Q 041054 228 IAHLVVV 234 (298)
Q Consensus 228 I~~~~~~ 234 (298)
|+++|+.
T Consensus 252 iv~~Li~ 258 (672)
T PHA02730 252 IVKLLIK 258 (672)
T ss_pred HHHHHHh
Confidence 9999887
No 47
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.79 E-value=1.3e-18 Score=126.70 Aligned_cols=87 Identities=31% Similarity=0.413 Sum_probs=80.3
Q ss_pred HHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcH
Q 041054 17 LHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHG 96 (298)
Q Consensus 17 Lh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~ 96 (298)
||+|++.|+.+++++|++.+.+++. |.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..++.
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~--------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 72 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL--------GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNL 72 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS--------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHH
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC--------CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCH
Confidence 8999999999999999999987765 67999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCC
Q 041054 97 ACAALLNPASAEPLV 111 (298)
Q Consensus 97 ~~~~~Ll~~ga~~~~ 111 (298)
+++++|+++|+++..
T Consensus 73 ~~~~~Ll~~g~~~~~ 87 (89)
T PF12796_consen 73 EIVKLLLEHGADVNI 87 (89)
T ss_dssp HHHHHHHHTTT-TTS
T ss_pred HHHHHHHHcCCCCCC
Confidence 999999999998643
No 48
>PHA02730 ankyrin-like protein; Provisional
Probab=99.78 E-value=1e-18 Score=167.02 Aligned_cols=133 Identities=11% Similarity=0.044 Sum_probs=112.6
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCC----hHHHHHHHhCCC--CccccCCCCCCCCChHHHH---HHHcC---------CH
Q 041054 2 YARFVNIRDGRGATPLHLAARQRR----PECVHILLDSGA--LVCASTGGYGCPGSTPLHL---AARGG---------SI 63 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~----~~~v~~Ll~~ga--~~~~~~~~~~~~g~TpLh~---A~~~g---------~~ 63 (298)
+|+++|.. ..|+||||+|+..++ .+++++|+++|+ +++..+. .|.||||. |...+ ..
T Consensus 368 ~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~----~G~T~Lh~~i~a~~~n~~~~~~e~~~~ 442 (672)
T PHA02730 368 NGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSN----NGRLCMYGLILSRFNNCGYHCYETILI 442 (672)
T ss_pred CCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCcccccccc----CCCchHhHHHHHHhccccccccchhHH
Confidence 68999985 799999999998875 899999999998 5777776 79999994 33332 23
Q ss_pred HHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhH-HHHHHHHHHHHh--hhHH
Q 041054 64 DCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQ-EAKALLENALME--ANKE 140 (298)
Q Consensus 64 ~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~-~~~t~L~~A~~~--~~~~ 140 (298)
+++++|+.+||+++.+|..|.||||+|+..++.+++++|+++|++ ++..+. .|.|||+.|... ++.+
T Consensus 443 ~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAd----------IN~~d~~~g~TaL~~Aa~~~~~~~e 512 (672)
T PHA02730 443 DVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGAS----------VNTTSRSIINTAIQKSSYRRENKTK 512 (672)
T ss_pred HHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCC----------CCCCCCcCCcCHHHHHHHhhcCcHH
Confidence 579999999999999999999999999999999999999999999 456665 589999999874 5778
Q ss_pred HHHHHhcCC
Q 041054 141 REKNILKGT 149 (298)
Q Consensus 141 ~~~~ll~~~ 149 (298)
++++|+..+
T Consensus 513 Iv~~LLs~g 521 (672)
T PHA02730 513 LVDLLLSYH 521 (672)
T ss_pred HHHHHHHcC
Confidence 877776543
No 49
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.78 E-value=2.8e-19 Score=167.43 Aligned_cols=203 Identities=21% Similarity=0.232 Sum_probs=164.2
Q ss_pred CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Q 041054 4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSG 83 (298)
Q Consensus 4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g 83 (298)
..+|..|.+|.|+||.|+.+|+.+++++|+++.+-++..+. .|.+|||+|+++|+.++|+.|+.++..+|..+..|
T Consensus 40 ds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~----kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~ 115 (854)
T KOG0507|consen 40 DSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDT----KGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIEN 115 (854)
T ss_pred ccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhc----cCcceEEehhhcCcchHHHHHHhcccCCCcccccC
Confidence 35788999999999999999999999999999999888886 89999999999999999999999999999999999
Q ss_pred CcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCCCCCCCCCCCCCCC
Q 041054 84 RIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGA 163 (298)
Q Consensus 84 ~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~~~~~~p~~~~~~~ 163 (298)
.||||.|++++|.+++.+|+.+|++|.+ .|+.++|+|..|+..+..+++..|+.. ++..+.. ...+
T Consensus 116 ~tplhlaaqhgh~dvv~~Ll~~~adp~i----------~nns~~t~ldlA~qfgr~~Vvq~ll~~-~~~~~~~--~~~~- 181 (854)
T KOG0507|consen 116 ETPLHLAAQHGHLEVVFYLLKKNADPFI----------RNNSKETVLDLASRFGRAEVVQMLLQK-KFPVQSS--LRVG- 181 (854)
T ss_pred cCccchhhhhcchHHHHHHHhcCCCccc----------cCcccccHHHHHHHhhhhHHHHHHhhh-ccchhhc--ccCC-
Confidence 9999999999999999999999999754 678899999999999999999998877 4433321 1111
Q ss_pred cccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEE
Q 041054 164 DDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVV 234 (298)
Q Consensus 164 ~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~ 234 (298)
.. .+.-....|..-- ..-||..|++-+++.+-+.+.....+|.+|.+---....++++++.
T Consensus 182 -~~-~~~~~~~~plHla--------akngh~~~~~~ll~ag~din~~t~~gtalheaalcgk~evvr~ll~ 242 (854)
T KOG0507|consen 182 -DI-KRPFPAIYPLHLA--------AKNGHVECMQALLEAGFDINYTTEDGTALHEAALCGKAEVVRFLLE 242 (854)
T ss_pred -CC-CCCCCCcCCcchh--------hhcchHHHHHHHHhcCCCcccccccchhhhhHhhcCcchhhhHHHh
Confidence 10 0111111111111 1138999999998887777766666688888888788888888775
No 50
>PHA02795 ankyrin-like protein; Provisional
Probab=99.78 E-value=8.1e-19 Score=160.56 Aligned_cols=135 Identities=11% Similarity=0.038 Sum_probs=117.7
Q ss_pred CCCCcc------cCCCCCCcHHHHHHH--cCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC
Q 041054 2 YARFVN------IRDGRGATPLHLAAR--QRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWG 73 (298)
Q Consensus 2 ~~~~vn------~~d~~G~TpLh~Aa~--~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g 73 (298)
.++++| .++..++|+||+|+. .|+.++|++|+++||+++.. .+.||||+|+..++.+++++|+++|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~------~~~t~lh~A~~~~~~eIVk~Lls~G 172 (437)
T PHA02795 99 KNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI------ECLNAYFRGICKKESSVVEFILNCG 172 (437)
T ss_pred cccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC------CCCCHHHHHHHcCcHHHHHHHHhcC
Confidence 466777 788899999999999 89999999999999999874 3589999999999999999999999
Q ss_pred CCCccc------ccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc
Q 041054 74 ADRLHR------DVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK 147 (298)
Q Consensus 74 ad~~~~------d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~ 147 (298)
++.... +..+.|++|.|...++.+++++|+++|++ ++.++..|.||||+|+..++.+++++|++
T Consensus 173 a~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD----------IN~kD~~G~TpLh~Aa~~g~~eiVelLL~ 242 (437)
T PHA02795 173 IPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED----------INQLDAGGRTLLYRAIYAGYIDLVSWLLE 242 (437)
T ss_pred CcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC----------cCcCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 854322 23478999999999999999999999999 67889999999999999999998888776
Q ss_pred C-CCCC
Q 041054 148 G-TAYS 152 (298)
Q Consensus 148 ~-~~~~ 152 (298)
. +++.
T Consensus 243 ~GAdIN 248 (437)
T PHA02795 243 NGANVN 248 (437)
T ss_pred CCCCCC
Confidence 4 4443
No 51
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.78 E-value=2.5e-18 Score=151.42 Aligned_cols=103 Identities=20% Similarity=0.209 Sum_probs=93.3
Q ss_pred CCCCcccCC----CCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCc
Q 041054 2 YARFVNIRD----GRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRL 77 (298)
Q Consensus 2 ~~~~vn~~d----~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~ 77 (298)
+|+++|.++ ..|.||||+|+..++.+++++|+++||++|..+.. .|.||||+|+..++.+++++|++.|++++
T Consensus 55 ~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~---~g~TpLh~Aa~~~~~eivklLL~~GAdin 131 (300)
T PHA02884 55 LGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEE---AKITPLYISVLHGCLKCLEILLSYGADIN 131 (300)
T ss_pred CCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 688999874 68999999999999999999999999999986431 69999999999999999999999999999
Q ss_pred ccccCCCcHHHHHHhcCcHHHHHHhccCCC
Q 041054 78 HRDVSGRIPYAVALKHKHGACAALLNPASA 107 (298)
Q Consensus 78 ~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga 107 (298)
.+|..|.||||+|+..++.+++.++...+.
T Consensus 132 ~kd~~G~TpL~~A~~~~~~~~~~~~~~~~~ 161 (300)
T PHA02884 132 IQTNDMVTPIELALMICNNFLAFMICDNEI 161 (300)
T ss_pred CCCCCCCCHHHHHHHhCChhHHHHhcCCcc
Confidence 999999999999999999888877765443
No 52
>PHA02917 ankyrin-like protein; Provisional
Probab=99.78 E-value=1.5e-18 Score=168.88 Aligned_cols=147 Identities=18% Similarity=0.098 Sum_probs=113.3
Q ss_pred CCCcccCCCCCCcHHHHHHHc---CChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcC------------------
Q 041054 3 ARFVNIRDGRGATPLHLAARQ---RRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG------------------ 61 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~---g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g------------------ 61 (298)
+..++.+|.+|+||||+|+.. |+.++|++||+.|++++..+. .|+||||+|+..|
T Consensus 22 ~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~----~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~ 97 (661)
T PHA02917 22 RDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNW----RQLTPLEEYTNSRHVKVNKDIAMALLEATGY 97 (661)
T ss_pred cCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCC----CCCCHHHHHHHcCChhHHHHHHHHHHhccCC
Confidence 455678899999999998655 889999999999999998776 7999999777643
Q ss_pred -----------------CHHHHHHHHHcCCCCcccccCCCcHHHHHH--hcCcHHHHHHhccCCCCCCCCCCCh----hh
Q 041054 62 -----------------SIDCIRELLAWGADRLHRDVSGRIPYAVAL--KHKHGACAALLNPASAEPLVWPSPL----KF 118 (298)
Q Consensus 62 -----------------~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~--~~~~~~~~~~Ll~~ga~~~~~~~~~----~~ 118 (298)
+.++|++|+++|+|++.+|..|+||||+|+ ..++.+++++|+++|+++....... .+
T Consensus 98 ~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~ 177 (661)
T PHA02917 98 SNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAY 177 (661)
T ss_pred CCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccc
Confidence 567889999999999999999999999654 5789999999999999964311000 00
Q ss_pred hhHhhHHHHHHHHHHHH-----------hhhHHHHHHHhc-CCCCCC
Q 041054 119 ISELNQEAKALLENALM-----------EANKEREKNILK-GTAYSL 153 (298)
Q Consensus 119 ~~~~~~~~~t~L~~A~~-----------~~~~~~~~~ll~-~~~~~~ 153 (298)
.......+.|+||+|+. .++.+++++|+. |+++..
T Consensus 178 ~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~ 224 (661)
T PHA02917 178 DDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSS 224 (661)
T ss_pred ccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCccc
Confidence 11122345799999976 346788887764 666554
No 53
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.77 E-value=6e-19 Score=141.99 Aligned_cols=101 Identities=21% Similarity=0.255 Sum_probs=92.1
Q ss_pred cccCCCCCCcHHHHHHHcCCh---HHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCccccc
Q 041054 6 VNIRDGRGATPLHLAARQRRP---ECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW-GADRLHRDV 81 (298)
Q Consensus 6 vn~~d~~G~TpLh~Aa~~g~~---~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~ 81 (298)
++.+|..|+||||+|+..|+. +++++|++.|++++.++.. .|+||||+|+..++.+++++|+.. |++++.+|.
T Consensus 48 ~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~---~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~ 124 (154)
T PHA02736 48 VLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERV---FGNTPLHIAVYTQNYELATWLCNQPGVNMEILNY 124 (154)
T ss_pred HHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCC---CCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccC
Confidence 345789999999999999987 4688999999999987632 699999999999999999999984 999999999
Q ss_pred CCCcHHHHHHhcCcHHHHHHhccCCCCC
Q 041054 82 SGRIPYAVALKHKHGACAALLNPASAEP 109 (298)
Q Consensus 82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~ 109 (298)
.|.||||+|+..++.+++++|+.+|++.
T Consensus 125 ~g~tpL~~A~~~~~~~i~~~Ll~~ga~~ 152 (154)
T PHA02736 125 AFKTPYYVACERHDAKMMNILRAKGAQC 152 (154)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 9999999999999999999999999874
No 54
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.75 E-value=1.3e-17 Score=127.70 Aligned_cols=126 Identities=37% Similarity=0.503 Sum_probs=113.2
Q ss_pred ccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcH
Q 041054 7 NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIP 86 (298)
Q Consensus 7 n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp 86 (298)
+.+|.+|+||||+|+..++.+++++|++.+.+.+..+. .|.||||+|+..++.+++++|++.|++++..+..|.||
T Consensus 1 ~~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~----~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 76 (126)
T cd00204 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDN----DGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTP 76 (126)
T ss_pred CCcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCC----CCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 35678899999999999999999999999998766666 79999999999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHh
Q 041054 87 YAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNIL 146 (298)
Q Consensus 87 L~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll 146 (298)
+|+|+..++.+++++|+.++.+ ....+..+.++++.|...+..+.++.|+
T Consensus 77 l~~a~~~~~~~~~~~L~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~Ll 126 (126)
T cd00204 77 LHLAARNGNLDVVKLLLKHGAD----------VNARDKDGRTPLHLAAKNGHLEVVKLLL 126 (126)
T ss_pred HHHHHHcCcHHHHHHHHHcCCC----------CcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence 9999999999999999999865 3556677889999999998888877663
No 55
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.74 E-value=3.1e-18 Score=170.03 Aligned_cols=140 Identities=31% Similarity=0.318 Sum_probs=116.9
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCC-----------------------------CCCCCCCh
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTG-----------------------------GYGCPGST 52 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~-----------------------------~~~~~g~T 52 (298)
|+.++|..-..|.||||.|+..|+.++++.|++.++..+.... ..+..|+|
T Consensus 463 ~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~T 542 (1143)
T KOG4177|consen 463 YGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYT 542 (1143)
T ss_pred cCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccc
Confidence 6777888888888888888888888877777776643332221 11237899
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHH
Q 041054 53 PLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLEN 132 (298)
Q Consensus 53 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~ 132 (298)
|||+|+..|+..+|++||++|||++.+++.|+||||.|+..|+.+|+.+|+++|++ ++..+.++.|||++
T Consensus 543 pLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~----------vna~d~~g~TpL~i 612 (1143)
T KOG4177|consen 543 PLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGAS----------VNAADLDGFTPLHI 612 (1143)
T ss_pred hHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCC----------CCcccccCcchhHH
Confidence 99999999999999999999999999999999999999999999999999999999 57788999999999
Q ss_pred HHHhhhHHHHHHHhcCCCC
Q 041054 133 ALMEANKEREKNILKGTAY 151 (298)
Q Consensus 133 A~~~~~~~~~~~ll~~~~~ 151 (298)
|...+...++++++.....
T Consensus 613 A~~lg~~~~~k~l~~~~~~ 631 (1143)
T KOG4177|consen 613 AVRLGYLSVVKLLKVVTAT 631 (1143)
T ss_pred HHHhcccchhhHHHhccCc
Confidence 9999999999888775543
No 56
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.74 E-value=6.1e-18 Score=132.89 Aligned_cols=121 Identities=27% Similarity=0.243 Sum_probs=107.3
Q ss_pred HHHHHHHcCChHHHHHHHhCCCC-ccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcC
Q 041054 16 PLHLAARQRRPECVHILLDSGAL-VCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHK 94 (298)
Q Consensus 16 pLh~Aa~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~ 94 (298)
-+.+|+..+....|+.||+..++ +|.++. .|+||||-|+++|+.+||+.|+..||+++.+...|+||||-|+..+
T Consensus 66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~----D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWn 141 (228)
T KOG0512|consen 66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDE----DEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWN 141 (228)
T ss_pred HHHHHHhhccHHHHHHHHHhcccccccccc----ccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhccc
Confidence 36789999999999999988665 677777 8999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHH-HHHHHhcCCC
Q 041054 95 HGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKE-REKNILKGTA 150 (298)
Q Consensus 95 ~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~-~~~~ll~~~~ 150 (298)
+.+++-+|+++|++ +++......||||.|+...+.. .+.+|+...-
T Consensus 142 N~~va~~LLqhgaD----------VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dry 188 (228)
T KOG0512|consen 142 NFEVAGRLLQHGAD----------VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRY 188 (228)
T ss_pred chhHHHHHHhccCc----------ccccccccchhhHHhhcccchHHHHHHHhhccc
Confidence 99999999999999 6778888899999999876554 6666665543
No 57
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.73 E-value=2.5e-18 Score=139.86 Aligned_cols=134 Identities=21% Similarity=0.161 Sum_probs=117.9
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS 82 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~ 82 (298)
+.-.|..+--+++|+++++...+++.+..|.++ .+|..+. .|.|||+||+.+|++++|++||+.|||++..-+.
T Consensus 119 ~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De----~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~ 192 (296)
T KOG0502|consen 119 GARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDE----FGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKY 192 (296)
T ss_pred cccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCccc----cCchHhHHHHhcCchHHHHHHHHcCCChhhhhhh
Confidence 455778888899999999998888887766654 4556666 8999999999999999999999999999999999
Q ss_pred CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC-CCCC
Q 041054 83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG-TAYS 152 (298)
Q Consensus 83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~-~~~~ 152 (298)
..|+|.+|...|..+++++|+..+.+ ++..|.+|.|||-+|++.++.++++.|+.. ++..
T Consensus 193 resALsLAt~ggytdiV~lLL~r~vd----------VNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t 253 (296)
T KOG0502|consen 193 RESALSLATRGGYTDIVELLLTREVD----------VNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVT 253 (296)
T ss_pred hhhhHhHHhcCChHHHHHHHHhcCCC----------cceeccCCCceeeeeecCChHHHHHHHHhcCCCcc
Confidence 99999999999999999999999998 678899999999999999999988877765 4443
No 58
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.73 E-value=3.3e-17 Score=164.39 Aligned_cols=127 Identities=25% Similarity=0.229 Sum_probs=113.2
Q ss_pred CCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHH
Q 041054 9 RDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYA 88 (298)
Q Consensus 9 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~ 88 (298)
.+..+.++||.||..|+.++++.|++.|+++|..+. .|+||||+|+..|+.+++++|+++|++++.+|.+|+||||
T Consensus 521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~----~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~ 596 (823)
T PLN03192 521 DDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDS----KGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALW 596 (823)
T ss_pred CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHH
Confidence 344678999999999999999999999999998887 8999999999999999999999999999999999999999
Q ss_pred HHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC-CCC
Q 041054 89 VALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG-TAY 151 (298)
Q Consensus 89 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~-~~~ 151 (298)
+|+..|+.+++++|++.++... ...+.++|+.|+..++.++++.|++. +++
T Consensus 597 ~A~~~g~~~iv~~L~~~~~~~~------------~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi 648 (823)
T PLN03192 597 NAISAKHHKIFRILYHFASISD------------PHAAGDLLCTAAKRNDLTAMKELLKQGLNV 648 (823)
T ss_pred HHHHhCCHHHHHHHHhcCcccC------------cccCchHHHHHHHhCCHHHHHHHHHCCCCC
Confidence 9999999999999998876521 23456899999999999988887764 443
No 59
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.72 E-value=1.3e-17 Score=117.69 Aligned_cols=104 Identities=26% Similarity=0.356 Sum_probs=93.3
Q ss_pred cHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcC
Q 041054 15 TPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHK 94 (298)
Q Consensus 15 TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~ 94 (298)
--+++++++|.++-|+..+..|.++|..-+ |+||||||+-.|.++++++|+..||+++.+|++|-|||--|+..|
T Consensus 4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~g-----gR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEG 78 (117)
T KOG4214|consen 4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIYG-----GRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEG 78 (117)
T ss_pred hhHhhhhccCcHHHHHHHHHccccHHHHhC-----CcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHh
Confidence 457899999999999999999988887764 999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHH
Q 041054 95 HGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENA 133 (298)
Q Consensus 95 ~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A 133 (298)
|.+|+++|++.|++. ....++|.+.++.+
T Consensus 79 H~~cVklLL~~GAdr----------t~~~PdG~~~~eat 107 (117)
T KOG4214|consen 79 HRDCVKLLLQNGADR----------TIHAPDGTALIEAT 107 (117)
T ss_pred hHHHHHHHHHcCccc----------ceeCCCchhHHhhc
Confidence 999999999999994 44566676666543
No 60
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.70 E-value=1.9e-17 Score=150.31 Aligned_cols=135 Identities=27% Similarity=0.305 Sum_probs=110.5
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCc----
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRL---- 77 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~---- 77 (298)
.+..+|..+.+|.|+||.++...+.++|++|+++|++||..++ .||||||.|+..|++.++++|+.+||++.
T Consensus 62 ~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~----e~wtPlhaaascg~~~i~~~li~~gA~~~avNs 137 (527)
T KOG0505|consen 62 RGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDN----EGWTPLHAAASCGYLNIVEYLIQHGANLLAVNS 137 (527)
T ss_pred cCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCcccccc----ccCCcchhhcccccHHHHHHHHHhhhhhhhccC
Confidence 4567788888999999999999999999999999999998888 89999999999999999999988775432
Q ss_pred -------------------------------------------------------ccccCCCcHHHHHHhcCcHHHHHHh
Q 041054 78 -------------------------------------------------------HRDVSGRIPYAVALKHKHGACAALL 102 (298)
Q Consensus 78 -------------------------------------------------------~~d~~g~tpL~~A~~~~~~~~~~~L 102 (298)
..+..|-|.||+|+.+|..+++++|
T Consensus 138 dg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lL 217 (527)
T KOG0505|consen 138 DGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALL 217 (527)
T ss_pred CCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHH
Confidence 2334578888888889999999999
Q ss_pred ccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc-CCC
Q 041054 103 NPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK-GTA 150 (298)
Q Consensus 103 l~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~-~~~ 150 (298)
+++|.+ .+.+|.+|++|||.|+..+..++.++|.. +++
T Consensus 218 l~ag~~----------~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~ 256 (527)
T KOG0505|consen 218 LQAGYS----------VNIKDYDGWTPLHAAAHWGQEDACELLVEHGAD 256 (527)
T ss_pred HHhccC----------cccccccCCCcccHHHHhhhHhHHHHHHHhhcc
Confidence 988888 46678888999999988888887766554 444
No 61
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.70 E-value=2.1e-17 Score=164.24 Aligned_cols=135 Identities=28% Similarity=0.326 Sum_probs=121.4
Q ss_pred CCCCcccCCCCCCcHHHHHHHcC-ChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHH---------
Q 041054 2 YARFVNIRDGRGATPLHLAARQR-RPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLA--------- 71 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g-~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~--------- 71 (298)
.+++++..|..|.||+|+|+..| ..+....+++.|+++|.... .|.||||+|+..|+.++++.|++
T Consensus 429 ~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~----~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~ 504 (1143)
T KOG4177|consen 429 RGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSK----QGFTPLHLAAQEGHTEVVQLLLEGGANDNLDA 504 (1143)
T ss_pred cCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhcc----ccCcchhhhhccCCchHHHHhhhcCCccCccc
Confidence 47889999999999999999999 89999999999999999888 78999999988888887777775
Q ss_pred ------------------------cCCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHH
Q 041054 72 ------------------------WGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAK 127 (298)
Q Consensus 72 ------------------------~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 127 (298)
+|++++.++.+|.||||+|+..|+.++|++|+++|++ ++.+++.|+
T Consensus 505 ~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAd----------v~ak~~~G~ 574 (1143)
T KOG4177|consen 505 KKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGAD----------VNAKDKLGY 574 (1143)
T ss_pred hhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcc----------ccccCCCCC
Confidence 4567778888999999999999999999999999999 677889999
Q ss_pred HHHHHHHHhhhHHHHHHHhcCCC
Q 041054 128 ALLENALMEANKEREKNILKGTA 150 (298)
Q Consensus 128 t~L~~A~~~~~~~~~~~ll~~~~ 150 (298)
||||.|+..+..+++.+|++.+.
T Consensus 575 TPLH~Aa~~G~~~i~~LLlk~GA 597 (1143)
T KOG4177|consen 575 TPLHQAAQQGHNDIAELLLKHGA 597 (1143)
T ss_pred ChhhHHHHcChHHHHHHHHHcCC
Confidence 99999999999998888877544
No 62
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.69 E-value=1.8e-17 Score=150.48 Aligned_cols=124 Identities=27% Similarity=0.284 Sum_probs=109.5
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCC----------------------------------
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYG---------------------------------- 47 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~---------------------------------- 47 (298)
+|++||..|..||||||.|+-.||..++++|+++|+++...+...+
T Consensus 95 ~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e 174 (527)
T KOG0505|consen 95 NGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEE 174 (527)
T ss_pred hcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhH
Confidence 7899999999999999999999999999999999987655442211
Q ss_pred ---------------------CCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccCC
Q 041054 48 ---------------------CPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPAS 106 (298)
Q Consensus 48 ---------------------~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~g 106 (298)
..|-|+||.|+.+|..++.++|+++|.+++.+|.+|+||||.|+..|..+++++|+++|
T Consensus 175 ~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~g 254 (527)
T KOG0505|consen 175 QTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHG 254 (527)
T ss_pred HHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhh
Confidence 34899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhhhHhhHHHHHHHHHHHH
Q 041054 107 AEPLVWPSPLKFISELNQEAKALLENALM 135 (298)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~~~t~L~~A~~ 135 (298)
++ ++.....|.+|+..|..
T Consensus 255 a~----------~d~~t~~g~~p~dv~de 273 (527)
T KOG0505|consen 255 AD----------MDAKTKMGETPLDVADE 273 (527)
T ss_pred cc----------cchhhhcCCCCccchhh
Confidence 98 45566667777666654
No 63
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.67 E-value=5.5e-16 Score=154.31 Aligned_cols=125 Identities=26% Similarity=0.268 Sum_probs=105.8
Q ss_pred CCCcccCCCCCCcHHH-HHHHcCChHHHHHHHhCCCCcc--------------------------------------ccC
Q 041054 3 ARFVNIRDGRGATPLH-LAARQRRPECVHILLDSGALVC--------------------------------------AST 43 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh-~Aa~~g~~~~v~~Ll~~ga~~~--------------------------------------~~~ 43 (298)
+.++|..|..|+|||| .|+.+++.+++++|+++|+..+ ...
T Consensus 42 ~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~ 121 (743)
T TIGR00870 42 KLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQY 121 (743)
T ss_pred ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhcccc
Confidence 5688999999999999 8889999999999999884100 000
Q ss_pred CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc--------------cCCCcHHHHHHhcCcHHHHHHhccCCCCC
Q 041054 44 GGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD--------------VSGRIPYAVALKHKHGACAALLNPASAEP 109 (298)
Q Consensus 44 ~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d--------------~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~ 109 (298)
...+..|.||||+|+..|+.++|++|+++|++++.++ ..|.||||+|+..++.+++++|+++|++
T Consensus 122 ~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad- 200 (743)
T TIGR00870 122 TSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD- 200 (743)
T ss_pred ccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc-
Confidence 0011359999999999999999999999999998753 2589999999999999999999999998
Q ss_pred CCCCCChhhhhHhhHHHHHHHHHHHHhh
Q 041054 110 LVWPSPLKFISELNQEAKALLENALMEA 137 (298)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~t~L~~A~~~~ 137 (298)
++..|..|.|+||.|+..+
T Consensus 201 ---------in~~d~~g~T~Lh~A~~~~ 219 (743)
T TIGR00870 201 ---------ILTADSLGNTLLHLLVMEN 219 (743)
T ss_pred ---------hhhHhhhhhHHHHHHHhhh
Confidence 6788999999999999886
No 64
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.67 E-value=1.4e-16 Score=150.95 Aligned_cols=130 Identities=30% Similarity=0.266 Sum_probs=116.9
Q ss_pred CCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCC-------------------CCCCChHHHHHHHcCCHHHHHHHHH
Q 041054 11 GRGATPLHLAARQRRPECVHILLDSGALVCASTGGY-------------------GCPGSTPLHLAARGGSIDCIRELLA 71 (298)
Q Consensus 11 ~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~-------------------~~~g~TpLh~A~~~g~~~~v~~Ll~ 71 (298)
..|.||||+|+.+.+.++|++||+.||||+.+..+. =+.|..||.+||..++.+++++|++
T Consensus 182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~ 261 (782)
T KOG3676|consen 182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA 261 (782)
T ss_pred hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence 479999999999999999999999999999654210 1368899999999999999999999
Q ss_pred cCCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054 72 WGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG 148 (298)
Q Consensus 72 ~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~ 148 (298)
+|||++.+|..|+|.||..+.+-..+|..+++++|+++. ....|..|.|||..|+..++.++.+.|++.
T Consensus 262 ~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l--------~~v~N~qgLTPLtLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 262 HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANAL--------EHVRNNQGLTPLTLAAKLGKKEMFQHILER 330 (782)
T ss_pred cCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCcc--------ccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence 999999999999999999999999999999999999832 356789999999999999999998888776
No 65
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.66 E-value=8.9e-17 Score=159.96 Aligned_cols=135 Identities=26% Similarity=0.158 Sum_probs=111.4
Q ss_pred CCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCC----------CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 041054 10 DGRGATPLHLAARQRRPECVHILLDSGALVCASTGG----------YGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79 (298)
Q Consensus 10 d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~----------~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~ 79 (298)
+..|.||||+||..|+.++|++||++|++++..... ....|.||||+|+..|+.+++++|+++|+|++.+
T Consensus 125 ~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~ 204 (743)
T TIGR00870 125 FTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTA 204 (743)
T ss_pred cCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhH
Confidence 357999999999999999999999999999965421 1135899999999999999999999999999999
Q ss_pred ccCCCcHHHHHHhcC---------cHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc
Q 041054 80 DVSGRIPYAVALKHK---------HGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK 147 (298)
Q Consensus 80 d~~g~tpL~~A~~~~---------~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~ 147 (298)
|..|+||||+|+..+ ...+.++++..++.... +.......|.+|.|||+.|+..++.++.+++++
T Consensus 205 d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~---~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~ 278 (743)
T TIGR00870 205 DSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRD---SKELEVILNHQGLTPLKLAAKEGRIVLFRLKLA 278 (743)
T ss_pred hhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCC---hHhhhhhcCCCCCCchhhhhhcCCccHHHHHHH
Confidence 999999999999986 23466677666554221 112224568889999999999999999998877
No 66
>PHA02792 ankyrin-like protein; Provisional
Probab=99.64 E-value=4.1e-16 Score=147.97 Aligned_cols=131 Identities=11% Similarity=0.073 Sum_probs=86.3
Q ss_pred CCcccCCCCCCcHHHHH-HHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHH-cCCHHHHHHHHHcCCCCc----
Q 041054 4 RFVNIRDGRGATPLHLA-ARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAAR-GGSIDCIRELLAWGADRL---- 77 (298)
Q Consensus 4 ~~vn~~d~~G~TpLh~A-a~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~-~g~~~~v~~Ll~~gad~~---- 77 (298)
..++..+.+|.+++|+- ..+|+.|+|++|+.+||++|..++ .|.||||+|+. .++.|++++|++.||++.
T Consensus 62 ~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n----~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~ 137 (631)
T PHA02792 62 SSVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLEINSIKN----GINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQ 137 (631)
T ss_pred hCCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCCcccccC----CCCcceeEeecCCCChHHHHHHHHCCCCcccccc
Confidence 34556666677777654 355677777777777777776665 56677777754 577777777777776522
Q ss_pred --------------------------------ccccCCCcHHHHHHhcC-------cHHHHHHhccCCCCCCCCCCChhh
Q 041054 78 --------------------------------HRDVSGRIPYAVALKHK-------HGACAALLNPASAEPLVWPSPLKF 118 (298)
Q Consensus 78 --------------------------------~~d~~g~tpL~~A~~~~-------~~~~~~~Ll~~ga~~~~~~~~~~~ 118 (298)
..|..|.||||+|+..+ +.+++++|+++|++
T Consensus 138 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~---------- 207 (631)
T PHA02792 138 YGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKE---------- 207 (631)
T ss_pred cCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCC----------
Confidence 23445777777777776 67777777777776
Q ss_pred hhHhhHHHHHHHHHHHHhh--hHHHHHHHhcC
Q 041054 119 ISELNQEAKALLENALMEA--NKEREKNILKG 148 (298)
Q Consensus 119 ~~~~~~~~~t~L~~A~~~~--~~~~~~~ll~~ 148 (298)
++..+..|.||||+|+... ..+++++|...
T Consensus 208 ~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~ 239 (631)
T PHA02792 208 MRYYTYREHTTLYYYVDKCDIKREIFDALFDS 239 (631)
T ss_pred cCccCCCCChHHHHHHHcccchHHHHHHHHhc
Confidence 4555666777777777766 56666666554
No 67
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.64 E-value=4.9e-16 Score=135.06 Aligned_cols=96 Identities=34% Similarity=0.391 Sum_probs=89.5
Q ss_pred CcccCC-CCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCcccccC
Q 041054 5 FVNIRD-GRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW-GADRLHRDVS 82 (298)
Q Consensus 5 ~vn~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~ 82 (298)
+||++- ..|+|+||+|+.+|+.++|+.||..|||+|.++. +|.|+||.|+.+||.|+|++||.. ++|+...|.+
T Consensus 331 nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDd----DGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~D 406 (452)
T KOG0514|consen 331 DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDD----DGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVD 406 (452)
T ss_pred CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccC----CccHHHhhhhhhChHHHHHHHhccCcccceeecCC
Confidence 577665 4699999999999999999999999999999998 899999999999999999999988 8999999999
Q ss_pred CCcHHHHHHhcCcHHHHHHhcc
Q 041054 83 GRIPYAVALKHKHGACAALLNP 104 (298)
Q Consensus 83 g~tpL~~A~~~~~~~~~~~Ll~ 104 (298)
|-|+|.+|...||.+|.-+|-.
T Consensus 407 gSTAl~IAleagh~eIa~mlYa 428 (452)
T KOG0514|consen 407 GSTALSIALEAGHREIAVMLYA 428 (452)
T ss_pred CchhhhhHHhcCchHHHHHHHH
Confidence 9999999999999999887743
No 68
>PHA02792 ankyrin-like protein; Provisional
Probab=99.62 E-value=1.8e-15 Score=143.69 Aligned_cols=112 Identities=14% Similarity=0.135 Sum_probs=99.1
Q ss_pred CCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHH---HHHHHHHcCCCCcccccCCCcHHH
Q 041054 12 RGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID---CIRELLAWGADRLHRDVSGRIPYA 88 (298)
Q Consensus 12 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~---~v~~Ll~~gad~~~~d~~g~tpL~ 88 (298)
.+..+++.||..|+.++|++|+++||+++..+.. ..+.||||+|+.....+ ++++|+++||+++.+|..|.||||
T Consensus 338 ~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~--g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh 415 (631)
T PHA02792 338 KHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDN--IINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILY 415 (631)
T ss_pred CcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCC--CCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHH
Confidence 3667899999999999999999999999988761 02579999988776654 688999999999999999999999
Q ss_pred HHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHH
Q 041054 89 VALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALM 135 (298)
Q Consensus 89 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~ 135 (298)
+|+..++.+++++|+++|++ ++.++..|.|||+.|..
T Consensus 416 ~Aa~~~n~eivelLLs~GAD----------IN~kD~~G~TpL~~A~~ 452 (631)
T PHA02792 416 YCIESHSVSLVEWLIDNGAD----------INITTKYGSTCIGICVI 452 (631)
T ss_pred HHHHcCCHHHHHHHHHCCCC----------CCCcCCCCCCHHHHHHH
Confidence 99999999999999999999 57788899999999976
No 69
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.62 E-value=2.2e-15 Score=127.09 Aligned_cols=130 Identities=35% Similarity=0.397 Sum_probs=118.5
Q ss_pred cccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCC-----HHHHHHHHHcCC---CCc
Q 041054 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGS-----IDCIRELLAWGA---DRL 77 (298)
Q Consensus 6 vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~-----~~~v~~Ll~~ga---d~~ 77 (298)
.+..+..+.+++|.++..+..+++++|+..|++++..+. .|.||||+|+..++ .+++++|++.|+ +.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~ 141 (235)
T COG0666 66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDA----DGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNN 141 (235)
T ss_pred cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccC----CCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcc
Confidence 345667799999999999999999999999999988887 89999999999999 999999999999 666
Q ss_pred ccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054 78 HRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT 149 (298)
Q Consensus 78 ~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~ 149 (298)
.+|..|.||||+|+..|+.+++++|++.|+++ ...+..+.|+++.|...+..+.++.+.+..
T Consensus 142 ~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~----------~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 142 LRDEDGNTPLHWAALNGDADIVELLLEAGADP----------NSRNSYGVTALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred ccCCCCCchhHHHHHcCchHHHHHHHhcCCCC----------cccccCCCcchhhhcccchHHHHHHHHhcC
Confidence 67999999999999999999999999999984 445889999999999999999888887754
No 70
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.61 E-value=2e-15 Score=127.54 Aligned_cols=98 Identities=36% Similarity=0.378 Sum_probs=92.1
Q ss_pred CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Q 041054 4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSG 83 (298)
Q Consensus 4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g 83 (298)
+.||.+|..|.|+|..|+..|+.+.|++||+.|+|+|..... .++||||+|+..|+.++.++|++.|+.+...|.-|
T Consensus 36 r~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg---~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvg 112 (396)
T KOG1710|consen 36 RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHG---TLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVG 112 (396)
T ss_pred hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCccccc---ccccHHHHHHHcCCchHHHHHHhccCccccccchh
Confidence 568999999999999999999999999999999999986654 78999999999999999999999999999999999
Q ss_pred CcHHHHHHhcCcHHHHHHhcc
Q 041054 84 RIPYAVALKHKHGACAALLNP 104 (298)
Q Consensus 84 ~tpL~~A~~~~~~~~~~~Ll~ 104 (298)
+|+-..|+.-|+.+||..+..
T Consensus 113 rTAaqmAAFVG~H~CV~iINN 133 (396)
T KOG1710|consen 113 RTAAQMAAFVGHHECVAIINN 133 (396)
T ss_pred hhHHHHHHHhcchHHHHHHhc
Confidence 999999999999999887744
No 71
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.58 E-value=7e-15 Score=106.91 Aligned_cols=64 Identities=39% Similarity=0.573 Sum_probs=59.2
Q ss_pred CCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054 13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD 80 (298)
Q Consensus 13 G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d 80 (298)
|.||||+|+..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|
T Consensus 26 ~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 26 GNTALHYAAENGNLEIVKLLLENGADINSQDK----NGNTALHYAAENGNLEIVKLLLEHGADVNIRN 89 (89)
T ss_dssp SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BST----TSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcccccccCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 89999999999999999999999999999987 89999999999999999999999999999875
No 72
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.58 E-value=7.9e-16 Score=144.57 Aligned_cols=146 Identities=25% Similarity=0.254 Sum_probs=121.7
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV 81 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 81 (298)
|.+.++..|..|.+|||+|+++|+.++|++||.++..+|.... +|.||||.|+..|+.+++.+|+.+|+|+-.+|.
T Consensus 71 ~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~----e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nn 146 (854)
T KOG0507|consen 71 YEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNI----ENETPLHLAAQHGHLEVVFYLLKKNADPFIRNN 146 (854)
T ss_pred chhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccc----cCcCccchhhhhcchHHHHHHHhcCCCccccCc
Confidence 4566788999999999999999999999999999988888877 899999999999999999999999999999999
Q ss_pred CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc-CCCCCC
Q 041054 82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK-GTAYSL 153 (298)
Q Consensus 82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~-~~~~~~ 153 (298)
.+.|+|.+|++.|..+++++|++....... ..+.. ...++..+.++||.|..+++.+++..|+. |.+++.
T Consensus 147 s~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~-~~~~~-~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~ 217 (854)
T KOG0507|consen 147 SKETVLDLASRFGRAEVVQMLLQKKFPVQS-SLRVG-DIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINY 217 (854)
T ss_pred ccccHHHHHHHhhhhHHHHHHhhhccchhh-cccCC-CCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCccc
Confidence 999999999999999999999887222111 11111 23345567789999999999998887766 455443
No 73
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.56 E-value=4e-15 Score=98.46 Aligned_cols=55 Identities=45% Similarity=0.578 Sum_probs=26.8
Q ss_pred HHhCC-CCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHH
Q 041054 32 LLDSG-ALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVA 90 (298)
Q Consensus 32 Ll~~g-a~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A 90 (298)
||++| ++++..+. .|+||||+|+..|+.++|++|++.|++++.+|..|+||||+|
T Consensus 1 LL~~~~~~~n~~d~----~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDK----YGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---T----TS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCC----CCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 46666 66666666 677888888888888888888877888888888888888776
No 74
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.54 E-value=1.4e-14 Score=141.88 Aligned_cols=86 Identities=30% Similarity=0.398 Sum_probs=83.5
Q ss_pred HHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCc
Q 041054 16 PLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKH 95 (298)
Q Consensus 16 pLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~ 95 (298)
.||.|+..|+.+.|++|++.|+++|..+. .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++
T Consensus 85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~----~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~ 160 (664)
T PTZ00322 85 ELCQLAASGDAVGARILLTGGADPNCRDY----DGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGF 160 (664)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCC----CCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCc
Confidence 58899999999999999999999998887 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccC
Q 041054 96 GACAALLNPA 105 (298)
Q Consensus 96 ~~~~~~Ll~~ 105 (298)
.+++++|+.+
T Consensus 161 ~~iv~~Ll~~ 170 (664)
T PTZ00322 161 REVVQLLSRH 170 (664)
T ss_pred HHHHHHHHhC
Confidence 9999999998
No 75
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.53 E-value=1.4e-14 Score=102.35 Aligned_cols=81 Identities=33% Similarity=0.380 Sum_probs=72.8
Q ss_pred CcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCC
Q 041054 5 FVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGR 84 (298)
Q Consensus 5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~ 84 (298)
+||..= .|+||||||+-+|..+++++|+..||+++.++. .|.|||.-|+..||.+||++||..|||...+..+|.
T Consensus 27 nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDK----ygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~ 101 (117)
T KOG4214|consen 27 NVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDK----YGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGT 101 (117)
T ss_pred cHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccc----cCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCch
Confidence 444433 799999999999999999999999999999988 899999999999999999999999999999888888
Q ss_pred cHHHHH
Q 041054 85 IPYAVA 90 (298)
Q Consensus 85 tpL~~A 90 (298)
+.+..+
T Consensus 102 ~~~eat 107 (117)
T KOG4214|consen 102 ALIEAT 107 (117)
T ss_pred hHHhhc
Confidence 766543
No 76
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.53 E-value=2.5e-14 Score=94.02 Aligned_cols=54 Identities=50% Similarity=0.733 Sum_probs=28.4
Q ss_pred CCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHH
Q 041054 13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELL 70 (298)
Q Consensus 13 G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll 70 (298)
|+||||+|++.|+.+++++|+++|.+++.++. .|+||||+|+..|+.+++++||
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~----~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDE----DGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-T----TS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHccCHHHHHHHC
Confidence 45566666666666666666666666555544 5666666666666666666554
No 77
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.53 E-value=4.1e-14 Score=119.32 Aligned_cols=101 Identities=36% Similarity=0.412 Sum_probs=93.9
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCC-----hHHHHHHHhCCC---CccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC
Q 041054 2 YARFVNIRDGRGATPLHLAARQRR-----PECVHILLDSGA---LVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWG 73 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~-----~~~v~~Ll~~ga---~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g 73 (298)
.+.+++.+|..|.||||+|+..++ .+++++||+.|+ ..+..+. .|+||||+|+..|+.+++++|++.|
T Consensus 95 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~----~g~tpl~~A~~~~~~~~~~~ll~~~ 170 (235)
T COG0666 95 SGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE----DGNTPLHWAALNGDADIVELLLEAG 170 (235)
T ss_pred cCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC----CCCchhHHHHHcCchHHHHHHHhcC
Confidence 367889999999999999999999 999999999999 4444455 8999999999999999999999999
Q ss_pred CCCcccccCCCcHHHHHHhcCcHHHHHHhccCC
Q 041054 74 ADRLHRDVSGRIPYAVALKHKHGACAALLNPAS 106 (298)
Q Consensus 74 ad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~g 106 (298)
++++..+..|.|++++|+..++.+++.+|+..+
T Consensus 171 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 171 ADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred CCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence 999999999999999999999999999999875
No 78
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.53 E-value=2e-14 Score=94.46 Aligned_cols=54 Identities=39% Similarity=0.550 Sum_probs=46.6
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhc
Q 041054 50 GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLN 103 (298)
Q Consensus 50 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll 103 (298)
|+||||+|+..|+.+++++|++.|++++.+|.+|+||||+|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 689999999999999999999999999999999999999999999999999985
No 79
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.49 E-value=7.2e-15 Score=124.39 Aligned_cols=117 Identities=22% Similarity=0.315 Sum_probs=98.1
Q ss_pred HHcCChHHHHHHHhC-CCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHH
Q 041054 21 ARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACA 99 (298)
Q Consensus 21 a~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~ 99 (298)
|+.|+.-.|++-|+. .-|.|.-++ .|.+|||||++.|+..+|+.|+.+|+.+|..+....||||+|+.+||.+++
T Consensus 8 cregna~qvrlwld~tehdln~gdd----hgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdiv 83 (448)
T KOG0195|consen 8 CREGNAFQVRLWLDDTEHDLNVGDD----HGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIV 83 (448)
T ss_pred hhcCCeEEEEEEecCcccccccccc----cCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHH
Confidence 455555445544443 556666665 899999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHh-cCCCC
Q 041054 100 ALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNIL-KGTAY 151 (298)
Q Consensus 100 ~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll-~~~~~ 151 (298)
+.|+++.++ ++..+..|.||||+|+..+...+.+-|+ .|+..
T Consensus 84 qkll~~kad----------vnavnehgntplhyacfwgydqiaedli~~ga~v 126 (448)
T KOG0195|consen 84 QKLLSRKAD----------VNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAV 126 (448)
T ss_pred HHHHHHhcc----------cchhhccCCCchhhhhhhcHHHHHHHHHhcccee
Confidence 999999998 7889999999999999999888655554 45543
No 80
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.48 E-value=5e-13 Score=102.04 Aligned_cols=97 Identities=46% Similarity=0.634 Sum_probs=90.1
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS 82 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~ 82 (298)
+.+++.+|..|.||||+|+..++.+++++|++.+++++..+. .|.||+|+|+..++.+++++|+..+.+++..+..
T Consensus 30 ~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~----~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~ 105 (126)
T cd00204 30 GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDK----DGNTPLHLAARNGNLDVVKLLLKHGADVNARDKD 105 (126)
T ss_pred CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCC----CCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCC
Confidence 445578899999999999999999999999999988887775 7999999999999999999999999999999999
Q ss_pred CCcHHHHHHhcCcHHHHHHhc
Q 041054 83 GRIPYAVALKHKHGACAALLN 103 (298)
Q Consensus 83 g~tpL~~A~~~~~~~~~~~Ll 103 (298)
+.||+++|...++.+++++|+
T Consensus 106 ~~~~l~~~~~~~~~~~~~~Ll 126 (126)
T cd00204 106 GRTPLHLAAKNGHLEVVKLLL 126 (126)
T ss_pred CCCHHHHHHhcCCHHHHHHhC
Confidence 999999999999999999885
No 81
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.47 E-value=5.6e-14 Score=92.96 Aligned_cols=51 Identities=47% Similarity=0.589 Sum_probs=33.7
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHH
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLA 57 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A 57 (298)
..++|.+|..|.||||+||.+|+.++|++||+.|++++.++. .|+||||+|
T Consensus 6 ~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~----~G~Tpl~~A 56 (56)
T PF13857_consen 6 PADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDK----DGQTPLHYA 56 (56)
T ss_dssp T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---T----TS--HHHH-
T ss_pred cCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcC----CCCCHHHhC
Confidence 378999999999999999999999999999999999999998 899999997
No 82
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=3.3e-13 Score=122.41 Aligned_cols=90 Identities=21% Similarity=0.202 Sum_probs=83.7
Q ss_pred HHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcH
Q 041054 17 LHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHG 96 (298)
Q Consensus 17 Lh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~ 96 (298)
|.-|+..|.+++|+..+..--|+...++ +|.||||-|+..||.+||++||++|+++|..|.+||||||.|+.-++.
T Consensus 554 LLDaaLeGEldlVq~~i~ev~DpSqpNd----EGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv 629 (752)
T KOG0515|consen 554 LLDAALEGELDLVQRIIYEVTDPSQPND----EGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNV 629 (752)
T ss_pred HHhhhhcchHHHHHHHHHhhcCCCCCCc----cchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCch
Confidence 4558899999999999988778877777 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCC
Q 041054 97 ACAALLNPASAEPL 110 (298)
Q Consensus 97 ~~~~~Ll~~ga~~~ 110 (298)
.+++.|+++|+-.+
T Consensus 630 ~~ckqLVe~Gaavf 643 (752)
T KOG0515|consen 630 PMCKQLVESGAAVF 643 (752)
T ss_pred HHHHHHHhccceEE
Confidence 99999999999743
No 83
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.42 E-value=1.1e-12 Score=111.04 Aligned_cols=122 Identities=22% Similarity=0.157 Sum_probs=107.5
Q ss_pred CCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcc-cccCCCcHHHHHH
Q 041054 13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLH-RDVSGRIPYAVAL 91 (298)
Q Consensus 13 G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~-~d~~g~tpL~~A~ 91 (298)
-..||.-++-.|..+....||+---++|..|. .|+|+|..|+..|+.++|++||+.|+|+|. ++..+.||||+|+
T Consensus 12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~----sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAA 87 (396)
T KOG1710|consen 12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDP----SGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAA 87 (396)
T ss_pred hhhHHHHHHccCcHHHHHHHHHHhhhhhccCC----CcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHH
Confidence 46799999999999999999987666888887 899999999999999999999999999987 4566999999999
Q ss_pred hcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054 92 KHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG 148 (298)
Q Consensus 92 ~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~ 148 (298)
..|+.++.++|++.|+.+. ..|.-|+|+-..|+.-|+-+.+..|-..
T Consensus 88 LSGn~dvcrllldaGa~~~----------~vNsvgrTAaqmAAFVG~H~CV~iINN~ 134 (396)
T KOG1710|consen 88 LSGNQDVCRLLLDAGARMY----------LVNSVGRTAAQMAAFVGHHECVAIINNH 134 (396)
T ss_pred HcCCchHHHHHHhccCccc----------cccchhhhHHHHHHHhcchHHHHHHhcc
Confidence 9999999999999999954 4677889999999998888877766443
No 84
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.38 E-value=5.4e-13 Score=129.72 Aligned_cols=203 Identities=22% Similarity=0.205 Sum_probs=128.5
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS 82 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~ 82 (298)
|+++..+|+.|.+||++|+-.||..+|+.||.+-++++.+.+. .+.|+|.+|+..|..++|++||..|++-..++-.
T Consensus 780 ganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdr---tkdt~lSlacsggr~~vvelLl~~gankehrnvs 856 (2131)
T KOG4369|consen 780 GANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDR---TKDTMLSLACSGGRTRVVELLLNAGANKEHRNVS 856 (2131)
T ss_pred cccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhccc---ccCceEEEecCCCcchHHHHHHHhhccccccchh
Confidence 4666777777777777777777777777777777777665442 6777777777777777777777777777777777
Q ss_pred CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc-CCCCCCCCCCCCCC
Q 041054 83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK-GTAYSLPSPSHSDV 161 (298)
Q Consensus 83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~-~~~~~~~~p~~~~~ 161 (298)
..|||.+|...|+.+++.+|+.+|++.+. ..-.+-|..||..|.++++.+..+.|++ |.+++-..+..-.
T Consensus 857 DytPlsla~Sggy~~iI~~llS~GseInS--------rtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrn- 927 (2131)
T KOG4369|consen 857 DYTPLSLARSGGYTKIIHALLSSGSEINS--------RTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRN- 927 (2131)
T ss_pred hcCchhhhcCcchHHHHHHHhhccccccc--------ccccccCcchhhhhhhccccHHHHHHhcccchhccccccccc-
Confidence 77777777777777777777777766322 1223456678888888888776666555 3333322211110
Q ss_pred CCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCcccccccceeEEEEeec
Q 041054 162 GADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRSTIAHLVVVKIEN 238 (298)
Q Consensus 162 ~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I~~~~~~~~~~ 238 (298)
..+=.-|+. |....+..+|+.-+..--...++ ||+...-..+.-.+-++|++....
T Consensus 928 -----------Taltla~fq----------gr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad 984 (2131)
T KOG4369|consen 928 -----------TALTLALFQ----------GRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGAD 984 (2131)
T ss_pred -----------cceeecccc----------CcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccc
Confidence 011111222 33344555666655655555555 777777777777777777765443
No 85
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.37 E-value=1.1e-12 Score=125.00 Aligned_cols=137 Identities=25% Similarity=0.249 Sum_probs=112.3
Q ss_pred CCcccCCCCCCcHHHHHHHc---CChHHHHHHHhCCC-CccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 041054 4 RFVNIRDGRGATPLHLAARQ---RRPECVHILLDSGA-LVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79 (298)
Q Consensus 4 ~~vn~~d~~G~TpLh~Aa~~---g~~~~v~~Ll~~ga-~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~ 79 (298)
.+++.+..-|+|.||.|..+ ++.++++.||+.-. -+|..-....+.|.||||+|+.+.+.++|++|++.|||++++
T Consensus 134 w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aR 213 (782)
T KOG3676|consen 134 WKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHAR 213 (782)
T ss_pred hccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhH
Confidence 46778888999999999974 46689999998632 233322222347999999999999999999999999999864
Q ss_pred ---------cc--------------CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHh
Q 041054 80 ---------DV--------------SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALME 136 (298)
Q Consensus 80 ---------d~--------------~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~ 136 (298)
|. .|..||.+|+--++.+|+++|+++||| ++..|.+|.|.||..+..
T Consensus 214 a~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd----------~~aqDS~GNTVLH~lVi~ 283 (782)
T KOG3676|consen 214 ACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD----------PNAQDSNGNTVLHMLVIH 283 (782)
T ss_pred hhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC----------CCccccCCChHHHHHHHH
Confidence 11 377899999999999999999999999 477899999999999999
Q ss_pred hhHHHHHHHhc-CCC
Q 041054 137 ANKEREKNILK-GTA 150 (298)
Q Consensus 137 ~~~~~~~~ll~-~~~ 150 (298)
-..++-.+++. +++
T Consensus 284 ~~~~My~~~L~~ga~ 298 (782)
T KOG3676|consen 284 FVTEMYDLALELGAN 298 (782)
T ss_pred HHHHHHHHHHhcCCC
Confidence 88888777665 444
No 86
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.36 E-value=2.1e-13 Score=132.54 Aligned_cols=191 Identities=19% Similarity=0.099 Sum_probs=157.7
Q ss_pred CCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcc-cccCCCcHHHH
Q 041054 11 GRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLH-RDVSGRIPYAV 89 (298)
Q Consensus 11 ~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~-~d~~g~tpL~~ 89 (298)
.+-.|+|-.||..||.|.|++|+..|+++..++. .|.+||.+|+-.||..+|+.|+.+.++++. .|..+.|+|.+
T Consensus 755 ~n~~t~LT~acaggh~e~vellv~rganiehrdk----kgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSl 830 (2131)
T KOG4369|consen 755 PNIKTNLTSACAGGHREEVELLVVRGANIEHRDK----KGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSL 830 (2131)
T ss_pred ccccccccccccCccHHHHHHHHHhccccccccc----ccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEE
Confidence 3457999999999999999999999999999888 899999999999999999999999999987 56779999999
Q ss_pred HHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC-CCCCCCCCCCCCCCccccc
Q 041054 90 ALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT-AYSLPSPSHSDVGADDNIS 168 (298)
Q Consensus 90 A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~-~~~~~~p~~~~~~~~~~~~ 168 (298)
|+..|+.+++++||.+|++ ...++....|||..|..-+..+++..|+..+ .++...-++.. .
T Consensus 831 acsggr~~vvelLl~~gan----------kehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklg--i----- 893 (2131)
T KOG4369|consen 831 ACSGGRTRVVELLLNAGAN----------KEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLG--I----- 893 (2131)
T ss_pred ecCCCcchHHHHHHHhhcc----------ccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccC--c-----
Confidence 9999999999999999998 4667888899999999999999998887654 33322211111 0
Q ss_pred ccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC--CCCCCCCcccccccceeEEEEe
Q 041054 169 EASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA--CLTPPVCPFCRSTIAHLVVVKI 236 (298)
Q Consensus 169 ~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~--~~~~~~Cp~cr~~I~~~~~~~~ 236 (298)
.+.....--||+.-+.-++.-+.+.+.+-.|. |.+..+|+..|..++.+|++.-
T Consensus 894 --------------sPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~ 949 (2131)
T KOG4369|consen 894 --------------SPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQ 949 (2131)
T ss_pred --------------chhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHh
Confidence 01111122399998888888888887776666 8999999999999999988743
No 87
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=2.5e-12 Score=116.77 Aligned_cols=95 Identities=25% Similarity=0.268 Sum_probs=83.8
Q ss_pred CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc-cC
Q 041054 4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD-VS 82 (298)
Q Consensus 4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~ 82 (298)
.|+...+..|.|+||-|+-.||.++|++||+.|+++|..|. +||||||.||..+++.+++.|++.|+-+.... .+
T Consensus 574 ~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DS----dGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSD 649 (752)
T KOG0515|consen 574 TDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADS----DGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSD 649 (752)
T ss_pred cCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccC----CCCchhhhhhhcCchHHHHHHHhccceEEeeeccc
Confidence 36677889999999999999999999999999999999998 89999999999999999999999999887654 45
Q ss_pred CCcHHHHHH--hcCcHHHHHHh
Q 041054 83 GRIPYAVAL--KHKHGACAALL 102 (298)
Q Consensus 83 g~tpL~~A~--~~~~~~~~~~L 102 (298)
+.||..-+- +.|...|.++|
T Consensus 650 meTa~eKCee~eeGY~~CsqyL 671 (752)
T KOG0515|consen 650 METAAEKCEEMEEGYDQCSQYL 671 (752)
T ss_pred ccchhhhcchhhhhHHHHHHHH
Confidence 788876543 45788888888
No 88
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.32 E-value=4.2e-12 Score=124.50 Aligned_cols=86 Identities=30% Similarity=0.359 Sum_probs=79.5
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-------CC
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW-------GA 74 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~-------ga 74 (298)
.|+++|.+|..|+||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|+++ |+
T Consensus 104 ~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~----~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga 179 (664)
T PTZ00322 104 GGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK----DGKTPLELAEENGFREVVQLLSRHSQCHFELGA 179 (664)
T ss_pred CCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHCCcHHHHHHHHhCCCcccccCC
Confidence 4789999999999999999999999999999999999999887 899999999999999999999999 89
Q ss_pred CCcccccCCCcHHHHHH
Q 041054 75 DRLHRDVSGRIPYAVAL 91 (298)
Q Consensus 75 d~~~~d~~g~tpL~~A~ 91 (298)
+++..+..|.+|+..+.
T Consensus 180 ~~~~~~~~g~~~~~~~~ 196 (664)
T PTZ00322 180 NAKPDSFTGKPPSLEDS 196 (664)
T ss_pred CCCccccCCCCccchhh
Confidence 99888888887776553
No 89
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=99.24 E-value=2.7e-11 Score=109.34 Aligned_cols=94 Identities=34% Similarity=0.349 Sum_probs=86.2
Q ss_pred ccCCCCCCcH------HHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054 7 NIRDGRGATP------LHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD 80 (298)
Q Consensus 7 n~~d~~G~Tp------Lh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d 80 (298)
-.+|.+|.|. ||..++.|+.++.-.||..||++|+.... .|.||||+|++.|+.--+++|+-+|||+...|
T Consensus 121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpe---kg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d 197 (669)
T KOG0818|consen 121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPE---KGNTPLHVAAKAGQILQAELLAVYGADPGAQD 197 (669)
T ss_pred CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcc---cCCchhHHHHhccchhhhhHHhhccCCCCCCC
Confidence 4578888776 89999999999999999999999998875 79999999999999999999999999999999
Q ss_pred cCCCcHHHHHHhcCcHHHHHHhc
Q 041054 81 VSGRIPYAVALKHKHGACAALLN 103 (298)
Q Consensus 81 ~~g~tpL~~A~~~~~~~~~~~Ll 103 (298)
..|+||+.+|-..||.++++-|+
T Consensus 198 ~~GmtP~~~AR~~gH~~laeRl~ 220 (669)
T KOG0818|consen 198 SSGMTPVDYARQGGHHELAERLV 220 (669)
T ss_pred CCCCcHHHHHHhcCchHHHHHHH
Confidence 99999999999999988776554
No 90
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.19 E-value=9.5e-12 Score=118.26 Aligned_cols=87 Identities=31% Similarity=0.417 Sum_probs=82.5
Q ss_pred CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Q 041054 4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSG 83 (298)
Q Consensus 4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g 83 (298)
...|++|..|+|+||+|+..+...++++||++|++++.+|.. .|+||||-|+..|+++|+-+||.+|+.+..+|+.|
T Consensus 43 n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~E---SG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeg 119 (1267)
T KOG0783|consen 43 NLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEE---SGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEG 119 (1267)
T ss_pred hhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeecccc---ccchHhhHhhhhchHHHHHHHHhcCCceEEecccC
Confidence 347899999999999999999999999999999999999985 79999999999999999999999999999999999
Q ss_pred CcHHHHHHhc
Q 041054 84 RIPYAVALKH 93 (298)
Q Consensus 84 ~tpL~~A~~~ 93 (298)
.+||.+-++-
T Consensus 120 lsplq~~~r~ 129 (1267)
T KOG0783|consen 120 LSPLQFLSRV 129 (1267)
T ss_pred CCHHHHHhhc
Confidence 9999988773
No 91
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=99.00 E-value=3.7e-10 Score=101.70 Aligned_cols=95 Identities=24% Similarity=0.256 Sum_probs=87.9
Q ss_pred cCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCcccccCCCcH
Q 041054 8 IRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW-GADRLHRDVSGRIP 86 (298)
Q Consensus 8 ~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~tp 86 (298)
.++.++..++++|++.|++..++.+.-.|.|++..+. +.+|+||.||..|+.+++++|++. +.+++.+|..|+||
T Consensus 501 ~~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~Dy----D~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtP 576 (622)
T KOG0506|consen 501 PRENDTVINVMYAAKNGDLSALRRFALQGMDLETKDY----DDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTP 576 (622)
T ss_pred cccccchhhhhhhhhcCCHHHHHHHHHhccccccccc----ccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCc
Confidence 4556778899999999999999999999999998887 789999999999999999999987 99999999999999
Q ss_pred HHHHHhcCcHHHHHHhccCC
Q 041054 87 YAVALKHKHGACAALLNPAS 106 (298)
Q Consensus 87 L~~A~~~~~~~~~~~Ll~~g 106 (298)
|.-|...+|.+++++|-++.
T Consensus 577 lDdA~~F~h~~v~k~L~~~~ 596 (622)
T KOG0506|consen 577 LDDAKHFKHKEVVKLLEEAQ 596 (622)
T ss_pred chHhHhcCcHHHHHHHHHHh
Confidence 99999999999999997653
No 92
>PF13606 Ank_3: Ankyrin repeat
Probab=98.94 E-value=1.1e-09 Score=62.33 Aligned_cols=28 Identities=54% Similarity=0.818 Sum_probs=15.6
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCCc
Q 041054 50 GSTPLHLAARGGSIDCIRELLAWGADRL 77 (298)
Q Consensus 50 g~TpLh~A~~~g~~~~v~~Ll~~gad~~ 77 (298)
|+||||+|+..|+.++|++||++|+|+|
T Consensus 2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 2 GNTPLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 4555555555555555555555555554
No 93
>PF13606 Ank_3: Ankyrin repeat
Probab=98.94 E-value=1.2e-09 Score=62.22 Aligned_cols=30 Identities=53% Similarity=0.645 Sum_probs=27.6
Q ss_pred CCCcHHHHHHHcCChHHHHHHHhCCCCccc
Q 041054 12 RGATPLHLAARQRRPECVHILLDSGALVCA 41 (298)
Q Consensus 12 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~ 41 (298)
+|+||||+||..|+.++|++||++|+|+|.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 589999999999999999999999999873
No 94
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.92 E-value=2.9e-09 Score=97.99 Aligned_cols=93 Identities=26% Similarity=0.289 Sum_probs=81.2
Q ss_pred HHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcH
Q 041054 17 LHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHG 96 (298)
Q Consensus 17 Lh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~ 96 (298)
|.-|+...++..+-+||.+|..........+-.|.|+||+|++.|++.+.++|+=+|+|+-.+|.+|+|+|.||-+.|..
T Consensus 628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq 707 (749)
T KOG0705|consen 628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ 707 (749)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence 56778888899999999998765443332333789999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCC
Q 041054 97 ACAALLNPASAEP 109 (298)
Q Consensus 97 ~~~~~Ll~~ga~~ 109 (298)
+|+.+|+++|..+
T Consensus 708 ec~d~llq~gcp~ 720 (749)
T KOG0705|consen 708 ECIDVLLQYGCPD 720 (749)
T ss_pred HHHHHHHHcCCCc
Confidence 9999999999864
No 95
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.91 E-value=2e-09 Score=62.85 Aligned_cols=31 Identities=52% Similarity=0.721 Sum_probs=19.2
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054 50 GSTPLHLAARGGSIDCIRELLAWGADRLHRD 80 (298)
Q Consensus 50 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d 80 (298)
|+||||+|+..|+.+++++|+++|++++.+|
T Consensus 2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d 32 (33)
T PF00023_consen 2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD 32 (33)
T ss_dssp SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence 5566666666666666666666666666554
No 96
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.89 E-value=2.7e-09 Score=62.27 Aligned_cols=33 Identities=42% Similarity=0.674 Sum_probs=30.8
Q ss_pred CCCcHHHHHHHcCChHHHHHHHhCCCCccccCC
Q 041054 12 RGATPLHLAARQRRPECVHILLDSGALVCASTG 44 (298)
Q Consensus 12 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~ 44 (298)
+|+||||+|+..|+.+++++||++|++++.+++
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 589999999999999999999999999998763
No 97
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.82 E-value=1.7e-08 Score=82.01 Aligned_cols=79 Identities=24% Similarity=0.500 Sum_probs=57.2
Q ss_pred ccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCC-----CCCCCCCCCCCcccccccceeEEEEeecCCC
Q 041054 167 ISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPN-----PTTACLTPPVCPFCRSTIAHLVVVKIENQED 241 (298)
Q Consensus 167 ~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~-----~~~~~~~~~~Cp~cr~~I~~~~~~~~~~~~~ 241 (298)
+....+...|.||++...+.+..+|||.+|..|+..+....+.. ..........||.||..|+...+..+..+..
T Consensus 12 ~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg~ 91 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRGQ 91 (193)
T ss_pred eccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccCC
Confidence 34445678899999999999999999999999998753322110 0011234579999999999988888777765
Q ss_pred CCcc
Q 041054 242 ADRD 245 (298)
Q Consensus 242 ~~~~ 245 (298)
...+
T Consensus 92 ~~~~ 95 (193)
T PLN03208 92 KAPQ 95 (193)
T ss_pred CCCC
Confidence 4443
No 98
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=8.9e-09 Score=85.18 Aligned_cols=65 Identities=22% Similarity=0.418 Sum_probs=54.2
Q ss_pred cCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEEeecCCCC
Q 041054 170 ASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQEDA 242 (298)
Q Consensus 170 ~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~~~~~~~~ 242 (298)
....-.|.||+|...+.++..|||.+|+.|+..+-.. .+....||+|+..|+.-.++.+..+...
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~--------~~~~~~cPVCK~~Vs~~~vvPlYGrG~~ 108 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQT--------RPNSKECPVCKAEVSIDTVVPLYGRGSK 108 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhh--------cCCCeeCCccccccccceEEeeeccCCC
Confidence 3456789999999999999999999999999655222 3445778999999999999999998763
No 99
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.80 E-value=2.2e-09 Score=68.99 Aligned_cols=47 Identities=36% Similarity=0.820 Sum_probs=39.8
Q ss_pred CcccccccccccceEEeCCCch-hHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 173 TELCCICFEQVCTIEVQDCGHQ-MCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 173 ~~~C~IC~~~~~~~~~~~CGH~-~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
...|.||++...++.+.||||. +|..|+..+.. ....||+||++|++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-----------~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLK-----------RKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-----------TTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-----------cCCCCCcCChhhcC
Confidence 4689999999999999999999 79999999855 23789999999976
No 100
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.80 E-value=9.6e-09 Score=94.53 Aligned_cols=99 Identities=26% Similarity=0.263 Sum_probs=87.3
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCC--ccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGAL--VCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD 80 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~--~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d 80 (298)
|-++-.++.+..|.||+|+..|+-++|++||++|.. ++..+. .|.|+||-|+..++..+.++|++.||.+...|
T Consensus 889 gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de----~get~lhkaa~~~~r~vc~~lvdagasl~ktd 964 (1004)
T KOG0782|consen 889 GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADE----TGETALHKAACQRNRAVCQLLVDAGASLRKTD 964 (1004)
T ss_pred CCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhh----hhhHHHHHHHHhcchHHHHHHHhcchhheecc
Confidence 345667888999999999999999999999999853 333444 79999999999999999999999999999999
Q ss_pred cCCCcHHHHHHhcCcHHHHHHhccC
Q 041054 81 VSGRIPYAVALKHKHGACAALLNPA 105 (298)
Q Consensus 81 ~~g~tpL~~A~~~~~~~~~~~Ll~~ 105 (298)
..|.||-.-|-+.|..+++.+|-..
T Consensus 965 ~kg~tp~eraqqa~d~dlaayle~r 989 (1004)
T KOG0782|consen 965 SKGKTPQERAQQAGDPDLAAYLESR 989 (1004)
T ss_pred cCCCChHHHHHhcCCchHHHHHhhh
Confidence 9999999999999999999998543
No 101
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.74 E-value=1.9e-08 Score=92.09 Aligned_cols=87 Identities=28% Similarity=0.354 Sum_probs=71.4
Q ss_pred cHHHHHHHcCChHHHHHHHhC--CCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHh
Q 041054 15 TPLHLAARQRRPECVHILLDS--GALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALK 92 (298)
Q Consensus 15 TpLh~Aa~~g~~~~v~~Ll~~--ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~ 92 (298)
-|||+++.....+-+..++.. ...++..+. .|.||||+|+..|+.+.++.|+.+||++..+|+.|++|||-|+.
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~----~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~ 97 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDP----PGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVS 97 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccC----CCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHH
Confidence 359999988887777664443 344555554 79999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHhccC
Q 041054 93 HKHGACAALLNPA 105 (298)
Q Consensus 93 ~~~~~~~~~Ll~~ 105 (298)
.|+.+++..++.+
T Consensus 98 ~g~~q~i~~vlr~ 110 (560)
T KOG0522|consen 98 TGNEQIITEVLRH 110 (560)
T ss_pred cCCHHHHHHHHHH
Confidence 9998877766554
No 102
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.72 E-value=4.2e-09 Score=100.68 Aligned_cols=94 Identities=20% Similarity=0.174 Sum_probs=78.8
Q ss_pred HHHHHHhC-CCC-ccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC-CCcHHHHHHhcCcHHHHHHhcc
Q 041054 28 CVHILLDS-GAL-VCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS-GRIPYAVALKHKHGACAALLNP 104 (298)
Q Consensus 28 ~v~~Ll~~-ga~-~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~-g~tpL~~A~~~~~~~~~~~Ll~ 104 (298)
-++-++.. +.+ .|..|. .|+|+||+|+..+..+++++||++|+|++.+|.. |+||||-|+..|+.+|+-+|+.
T Consensus 32 qlk~F~~k~c~n~anikD~----~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~ 107 (1267)
T KOG0783|consen 32 QLKGFSEKSCQNLANIKDR----YGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLS 107 (1267)
T ss_pred HHHHHHHHhhhhhhhHHHh----hccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHh
Confidence 34444443 322 445555 8999999999999999999999999999999975 9999999999999999999999
Q ss_pred CCCCCCCCCCChhhhhHhhHHHHHHHHHHHH
Q 041054 105 ASAEPLVWPSPLKFISELNQEAKALLENALM 135 (298)
Q Consensus 105 ~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~ 135 (298)
+|+. ...+|++|..||..-.+
T Consensus 108 ~g~S----------L~i~Dkeglsplq~~~r 128 (1267)
T KOG0783|consen 108 KGRS----------LRIKDKEGLSPLQFLSR 128 (1267)
T ss_pred cCCc----------eEEecccCCCHHHHHhh
Confidence 9987 56688999999976554
No 103
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.68 E-value=1e-08 Score=92.58 Aligned_cols=101 Identities=20% Similarity=0.186 Sum_probs=88.0
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccC-CCCCCCCCCChhhhhHhhH
Q 041054 46 YGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPA-SAEPLVWPSPLKFISELNQ 124 (298)
Q Consensus 46 ~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~-ga~~~~~~~~~~~~~~~~~ 124 (298)
.+..+.-++++|++.|.+..++.+.-.|.|++.+|.+.+|+||+|+..|+.+++++|++. +.+| ..+|.
T Consensus 502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~----------~~kDR 571 (622)
T KOG0506|consen 502 RENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDP----------DPKDR 571 (622)
T ss_pred ccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCC----------Chhhc
Confidence 344678899999999999999999999999999999999999999999999999999986 4442 66899
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhcCCCCCCCCC
Q 041054 125 EAKALLENALMEANKEREKNILKGTAYSLPSP 156 (298)
Q Consensus 125 ~~~t~L~~A~~~~~~~~~~~ll~~~~~~~~~p 156 (298)
+|+|||..|...++.+++++|.+-.......|
T Consensus 572 w~rtPlDdA~~F~h~~v~k~L~~~~~~y~~~~ 603 (622)
T KOG0506|consen 572 WGRTPLDDAKHFKHKEVVKLLEEAQYPYTLMP 603 (622)
T ss_pred cCCCcchHhHhcCcHHHHHHHHHHhcccccCc
Confidence 99999999999999999999887655443333
No 104
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=98.61 E-value=9.2e-08 Score=76.89 Aligned_cols=76 Identities=29% Similarity=0.325 Sum_probs=67.4
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCC-CCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSG-ALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV 81 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g-a~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 81 (298)
+.+||.+|..||||||.|+..|..+.+.+|+.+| +.|...+. .|.+++.+|-+.|..++|..|.+.-.+-...+.
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~----ssldaaqlaek~g~~~fvh~lfe~~~ets~p~n 77 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDE----SSLDAAQLAEKGGAQAFVHSLFENDRETSHPMN 77 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCccccccccc----ccchHHHHHHhcChHHHHHHHHHHhccCCCccc
Confidence 4689999999999999999999999999999999 88887777 899999999999999999999998655555444
Q ss_pred C
Q 041054 82 S 82 (298)
Q Consensus 82 ~ 82 (298)
.
T Consensus 78 s 78 (223)
T KOG2384|consen 78 S 78 (223)
T ss_pred C
Confidence 3
No 105
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.58 E-value=1.2e-07 Score=87.00 Aligned_cols=65 Identities=40% Similarity=0.539 Sum_probs=60.4
Q ss_pred CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHc
Q 041054 4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72 (298)
Q Consensus 4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ 72 (298)
..|+.+|..|.||||+|+..|+.+.++.|+.+||++..+++ .||+|||.|+..|+.+++..++.+
T Consensus 46 ~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~----~gWs~L~EAv~~g~~q~i~~vlr~ 110 (560)
T KOG0522|consen 46 LVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNN----EGWSPLHEAVSTGNEQIITEVLRH 110 (560)
T ss_pred ceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcccccc----ccccHHHHHHHcCCHHHHHHHHHH
Confidence 46889999999999999999999999999999999999888 899999999999999988877754
No 106
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.57 E-value=8.4e-08 Score=88.45 Aligned_cols=122 Identities=17% Similarity=0.154 Sum_probs=102.4
Q ss_pred HHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC--CcccccCCCcHHHHHHhcC
Q 041054 17 LHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGAD--RLHRDVSGRIPYAVALKHK 94 (298)
Q Consensus 17 Lh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad--~~~~d~~g~tpL~~A~~~~ 94 (298)
|..|+..+++--++.+-.+|.++-.++. .-.|-||+|+..|+-++|++||++|.. ++..|..|.|+||-|+..+
T Consensus 870 il~av~~~D~~klqE~h~~gg~ll~~~~----~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~ 945 (1004)
T KOG0782|consen 870 ILRAVLSSDLMKLQETHLNGGSLLIQGP----DHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQR 945 (1004)
T ss_pred HHHHHHhccHHHHHHHHhcCCceEeeCc----chhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhc
Confidence 5566777766656666667777766666 678999999999999999999999864 5667889999999999999
Q ss_pred cHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCCCC
Q 041054 95 HGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTAYS 152 (298)
Q Consensus 95 ~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~~~ 152 (298)
+..+.++|++.|+. +...|..|+||-+.|-..+..+....|....++.
T Consensus 946 ~r~vc~~lvdagas----------l~ktd~kg~tp~eraqqa~d~dlaayle~rq~yk 993 (1004)
T KOG0782|consen 946 NRAVCQLLVDAGAS----------LRKTDSKGKTPQERAQQAGDPDLAAYLESRQNYK 993 (1004)
T ss_pred chHHHHHHHhcchh----------heecccCCCChHHHHHhcCCchHHHHHhhhhchh
Confidence 99999999999998 5677889999999999999999888887666654
No 107
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=5.7e-08 Score=88.95 Aligned_cols=87 Identities=30% Similarity=0.533 Sum_probs=65.6
Q ss_pred CcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce--eEEEEeecCCCCCccccccC
Q 041054 173 TELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH--LVVVKIENQEDADRDIGDIS 250 (298)
Q Consensus 173 ~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~--~~~~~~~~~~~~~~~~~~~~ 250 (298)
...|.||++.+.......|||.+|..|++.+|.... .-.+..||.|+..|.- +..+.+......++ .....
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~------~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~-l~~~~ 258 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSA------IKGPCSCPICRSTITLKDLLPVFIEDDQKKEE-LKLHQ 258 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhc------ccCCccCCchhhhccccceeeeeeccccccHH-HHHHh
Confidence 678999999999999999999999999999987772 4567899999999998 77777766543333 22233
Q ss_pred CcccccccccccCCCCC
Q 041054 251 SPKLRKARKSRNFSEGS 267 (298)
Q Consensus 251 ~~~~~~~r~~~~~~~~~ 267 (298)
.|+. -.++++.|.+..
T Consensus 259 ~~ng-~~~~~r~F~~d~ 274 (513)
T KOG2164|consen 259 DPNG-IPDYNRRFSGDP 274 (513)
T ss_pred cccC-CCccccceecCc
Confidence 3333 456777776544
No 108
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.51 E-value=1.2e-07 Score=86.06 Aligned_cols=83 Identities=23% Similarity=0.250 Sum_probs=73.7
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcccccC-CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHH
Q 041054 53 PLHLAARGGSIDCIRELLAWGADRLHRDVS-GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLE 131 (298)
Q Consensus 53 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~-g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~ 131 (298)
-||-.++.|+.++.-.||..||++|..+.. |.||||+|++.|+.--+++|+-|||+ +...|.+|.||+.
T Consensus 136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD----------~~a~d~~GmtP~~ 205 (669)
T KOG0818|consen 136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD----------PGAQDSSGMTPVD 205 (669)
T ss_pred HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC----------CCCCCCCCCcHHH
Confidence 489999999999999999999999997754 99999999999999999999999999 4678999999999
Q ss_pred HHHHhhhHHHHHHH
Q 041054 132 NALMEANKEREKNI 145 (298)
Q Consensus 132 ~A~~~~~~~~~~~l 145 (298)
+|-..|+-++.+.|
T Consensus 206 ~AR~~gH~~laeRl 219 (669)
T KOG0818|consen 206 YARQGGHHELAERL 219 (669)
T ss_pred HHHhcCchHHHHHH
Confidence 99888876654433
No 109
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.48 E-value=1.2e-07 Score=93.58 Aligned_cols=89 Identities=33% Similarity=0.429 Sum_probs=77.4
Q ss_pred CCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHH
Q 041054 11 GRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVA 90 (298)
Q Consensus 11 ~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A 90 (298)
..|.|+||.|+..+..-.+++||++|+++|..+. .|.||||.+...|+...+..|+++|++.+..+.+|.+||++|
T Consensus 654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~----~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a 729 (785)
T KOG0521|consen 654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDS----KGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIA 729 (785)
T ss_pred hcccchhhhhhccchHHHHHHHHhcCCcchhhhc----cCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHH
Confidence 4678999999999999999999999999988887 799999999999999999999999999999999999999999
Q ss_pred HhcCcHHHHHHhc
Q 041054 91 LKHKHGACAALLN 103 (298)
Q Consensus 91 ~~~~~~~~~~~Ll 103 (298)
....+.+++-+|.
T Consensus 730 ~~~~~~d~~~l~~ 742 (785)
T KOG0521|consen 730 MEAANADIVLLLR 742 (785)
T ss_pred hhhccccHHHHHh
Confidence 8776666655553
No 110
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.39 E-value=5.2e-07 Score=83.52 Aligned_cols=65 Identities=37% Similarity=0.530 Sum_probs=60.3
Q ss_pred cCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCC
Q 041054 8 IRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADR 76 (298)
Q Consensus 8 ~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~ 76 (298)
..+.+|+|+||+||+.|++.+.++|+=+|+|+-..+. .|+|+|.||-..|.-+|+..|+.+|+..
T Consensus 656 ~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda----~g~t~l~yar~a~sqec~d~llq~gcp~ 720 (749)
T KOG0705|consen 656 CGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDA----HGRTALFYARQAGSQECIDVLLQYGCPD 720 (749)
T ss_pred ccCCCCcchhhhhhhhcchhHHHHHHHhCccceeccc----CCchhhhhHhhcccHHHHHHHHHcCCCc
Confidence 3466789999999999999999999999999999988 8999999999999999999999999753
No 111
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2e-07 Score=82.02 Aligned_cols=58 Identities=26% Similarity=0.645 Sum_probs=49.5
Q ss_pred CCCcccccccccccceEEeCCCchh-HHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEEeecC
Q 041054 171 SDTELCCICFEQVCTIEVQDCGHQM-CAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQ 239 (298)
Q Consensus 171 ~~~~~C~IC~~~~~~~~~~~CGH~~-C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~~~~~ 239 (298)
.....|.||+....+..+.||.|.+ |..|+..| .-++-.||.||++|.+++-...+..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~L-----------r~q~n~CPICRqpi~~ll~i~~~~~ 346 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSL-----------RYQTNNCPICRQPIEELLEIYVNKE 346 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHH-----------HHhhcCCCccccchHhhheeccccc
Confidence 3467899999999999999999999 99999888 3345679999999999998875543
No 112
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.34 E-value=2.8e-07 Score=81.63 Aligned_cols=99 Identities=29% Similarity=0.457 Sum_probs=67.1
Q ss_pred HHHHHHHHhhhHHHHHHHhcCCCCCCCCCCCCCCCCcccc-----------cccCCCcccccccccccceEEeCCCchhH
Q 041054 128 ALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNI-----------SEASDTELCCICFEQVCTIEVQDCGHQMC 196 (298)
Q Consensus 128 t~L~~A~~~~~~~~~~~ll~~~~~~~~~p~~~~~~~~~~~-----------~~~~~~~~C~IC~~~~~~~~~~~CGH~~C 196 (298)
.+|..|+..|.+|-..+.-.|.+.+.....-.+....+.+ +..+.-++|.||.++..++...||||.+|
T Consensus 313 KpL~QaL~eG~keGFYlyPdGr~~npdLt~l~~~~p~d~i~VtqEQyeLYceMgsTFeLCKICaendKdvkIEPCGHLlC 392 (563)
T KOG1785|consen 313 KPLFQALLEGHKEGFYLYPDGRDQNPDLTGLCQPPPQDRIKVTQEQYELYCEMGSTFELCKICAENDKDVKIEPCGHLLC 392 (563)
T ss_pred cHHHHHHHhccccceEECCCCccCCCChhhccCCCcccceeeeHHHHHHHHHccchHHHHHHhhccCCCcccccccchHH
Confidence 4677888888887666666665554322222221112211 33445589999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054 197 AQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK 235 (298)
Q Consensus 197 ~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~ 235 (298)
..|+..+ .+++ ....|||||-+|...-.+.
T Consensus 393 t~CLa~W-Q~sd--------~gq~CPFCRcEIKGte~vi 422 (563)
T KOG1785|consen 393 TSCLAAW-QDSD--------EGQTCPFCRCEIKGTEPVI 422 (563)
T ss_pred HHHHHhh-cccC--------CCCCCCceeeEecccccee
Confidence 9999555 3332 2478999999998665443
No 113
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.5e-07 Score=59.28 Aligned_cols=48 Identities=33% Similarity=0.781 Sum_probs=41.5
Q ss_pred cccccccccccceEEeCCCchh-HHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054 174 ELCCICFEQVCTIEVQDCGHQM-CAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL 231 (298)
Q Consensus 174 ~~C~IC~~~~~~~~~~~CGH~~-C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~ 231 (298)
..|.||++.+-+.+..-|||+. |-.|.++++. .++-.||.||++|...
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~----------~~~g~CPiCRapi~dv 56 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKK----------ALHGCCPICRAPIKDV 56 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHH----------ccCCcCcchhhHHHHH
Confidence 6799999999999999999998 9999999943 3457899999998654
No 114
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=3.2e-07 Score=78.32 Aligned_cols=48 Identities=31% Similarity=0.841 Sum_probs=40.6
Q ss_pred CcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054 173 TELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL 231 (298)
Q Consensus 173 ~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~ 231 (298)
.-.|.+|++...+....||||.||..|++.+|... ..||.||....--
T Consensus 239 ~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek-----------~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 239 TRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEK-----------AECPLCREKFQPS 286 (293)
T ss_pred CCceEEEecCCCCCCcCcCcchHHHHHHHHHHccc-----------cCCCcccccCCCc
Confidence 46899999999999999999999999998885443 4699999776543
No 115
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.29 E-value=2.2e-07 Score=91.55 Aligned_cols=132 Identities=17% Similarity=0.069 Sum_probs=98.7
Q ss_pred CcccCCCCCCcHHHHHHHcCChHHHHHHHhC-CCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCcccccC
Q 041054 5 FVNIRDGRGATPLHLAARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW-GADRLHRDVS 82 (298)
Q Consensus 5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~ 82 (298)
.+......|+|-||+++..++.-+++.+++- |......+. .|.--+|+ |..++.+++-+|+.+ |..++.+|..
T Consensus 566 ~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~----d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~ 640 (975)
T KOG0520|consen 566 LSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDR----DGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRN 640 (975)
T ss_pred ccccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcc----cCCChhhH-hhhcCCceeEEEEeecccccccccCC
Confidence 4455667899999999999999999999986 544444444 67777888 555667776666655 8899999999
Q ss_pred CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHH
Q 041054 83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNI 145 (298)
Q Consensus 83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~l 145 (298)
|+||||||..+|+..++..|++.|+++.+...|. ...+.|.|+-..|..++...+.-.|
T Consensus 641 G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps----~~~p~g~ta~~la~s~g~~gia~~l 699 (975)
T KOG0520|consen 641 GWTPLHWAAFRGREKLVASLIELGADPGAVTDPS----PETPGGKTAADLARANGHKGIAGYL 699 (975)
T ss_pred CCcccchHhhcCHHHHHHHHHHhccccccccCCC----CCCCCCCchhhhhhcccccchHHHH
Confidence 9999999999999999999999999887654442 2234456666666655555544433
No 116
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.26 E-value=2.7e-06 Score=75.24 Aligned_cols=70 Identities=29% Similarity=0.234 Sum_probs=61.7
Q ss_pred CcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHH
Q 041054 14 ATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPY 87 (298)
Q Consensus 14 ~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 87 (298)
.--|..||+.|+.+.|+.|++.|.++|..+. ...+||.+|...||.++|++|+++||-...-.-+|...+
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~----fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~ 106 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDR----FDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCH 106 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhc----ccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhh
Confidence 3458899999999999999999999999998 789999999999999999999999997766555666543
No 117
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=98.25 E-value=1.7e-06 Score=69.74 Aligned_cols=66 Identities=27% Similarity=0.079 Sum_probs=61.0
Q ss_pred CCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCcccccCCCcHHHHHHhcCcHHHHHHhccC
Q 041054 36 GALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWG-ADRLHRDVSGRIPYAVALKHKHGACAALLNPA 105 (298)
Q Consensus 36 ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ 105 (298)
+.++|..|. .||||||.|+..|+.+.|.+|+.+| +++...|..+.+++.+|-+.|+.+++..|.++
T Consensus 2 e~~in~rD~----fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~ 68 (223)
T KOG2384|consen 2 EGNINARDA----FGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN 68 (223)
T ss_pred CCCccchhh----hcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence 356777777 8999999999999999999999999 99999999999999999999999999999766
No 118
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.19 E-value=8.9e-07 Score=87.47 Aligned_cols=86 Identities=30% Similarity=0.348 Sum_probs=77.1
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHH
Q 041054 49 PGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKA 128 (298)
Q Consensus 49 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t 128 (298)
.|.|+||.|+..+..-++++|++.|+++|..|..|+||||.+...|+...+.+|+++|+++ +..+.++++
T Consensus 655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~----------~a~~~~~~~ 724 (785)
T KOG0521|consen 655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADP----------NAFDPDGKL 724 (785)
T ss_pred cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccc----------cccCccCcc
Confidence 5899999999999999999999999999999999999999999999999999999999995 567889999
Q ss_pred HHHHHHHhhhHHHHHH
Q 041054 129 LLENALMEANKEREKN 144 (298)
Q Consensus 129 ~L~~A~~~~~~~~~~~ 144 (298)
+|++|....+.+++-+
T Consensus 725 ~l~~a~~~~~~d~~~l 740 (785)
T KOG0521|consen 725 PLDIAMEAANADIVLL 740 (785)
T ss_pred hhhHHhhhccccHHHH
Confidence 9999977755444433
No 119
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.18 E-value=2.4e-06 Score=82.79 Aligned_cols=96 Identities=24% Similarity=0.177 Sum_probs=80.7
Q ss_pred CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCc------
Q 041054 4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRL------ 77 (298)
Q Consensus 4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~------ 77 (298)
-++|.+|.-|+++|+.|+.+.+.+++++|+++...+ + -+|.+|+..|..++|++|+.+-....
T Consensus 53 lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~----g-------dALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~ 121 (822)
T KOG3609|consen 53 LNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE----G-------DALLLAIAVGSVPLVELLLVHFVDAPYLERSG 121 (822)
T ss_pred cchhccChHhhhceecccccccHHHHHHHhcCcccc----c-------hHHHHHHHHHHHHHHHHHHhcccccchhcccc
Confidence 368999999999999999999999999999987543 1 38999999999999999998743321
Q ss_pred ----ccccCCCcHHHHHHhcCcHHHHHHhccCCCCCC
Q 041054 78 ----HRDVSGRIPYAVALKHKHGACAALLNPASAEPL 110 (298)
Q Consensus 78 ----~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~ 110 (298)
..-..+.|||.+|+..++.+|+++|+..|+...
T Consensus 122 d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~ 158 (822)
T KOG3609|consen 122 DANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP 158 (822)
T ss_pred ccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence 122347899999999999999999999998743
No 120
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.07 E-value=3.8e-06 Score=71.40 Aligned_cols=53 Identities=26% Similarity=0.648 Sum_probs=39.6
Q ss_pred CCCcccccccccccc--------eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEE
Q 041054 171 SDTELCCICFEQVCT--------IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVV 234 (298)
Q Consensus 171 ~~~~~C~IC~~~~~~--------~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~ 234 (298)
+....|.||++.... ....+|||.||..|+..+-. ....||+||..+......
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-----------~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-----------EKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-----------cCCCCCCCCCEeeEEeee
Confidence 346789999997543 24568999999999977622 236899999988865543
No 121
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.8e-06 Score=68.54 Aligned_cols=49 Identities=35% Similarity=0.741 Sum_probs=38.8
Q ss_pred CCcccccccccccceE--EeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054 172 DTELCCICFEQVCTIE--VQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL 231 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~--~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~ 231 (298)
....|.|||+.....+ ...|||.||.+|+..+-... ..||.||..|+.-
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~-----------~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT-----------NKCPTCRKKITHK 180 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHhC-----------CCCCCcccccchh
Confidence 3478999999877654 47899999999998873333 6899999888753
No 122
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.06 E-value=3.5e-06 Score=51.74 Aligned_cols=42 Identities=29% Similarity=0.638 Sum_probs=30.8
Q ss_pred cccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccc
Q 041054 176 CCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFC 224 (298)
Q Consensus 176 C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~c 224 (298)
|.||++-..+.+..+|||.||..|+..++..... ....||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~-------~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSG-------SGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSS-------ST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCC-------cCCCCcCC
Confidence 7899999999999999999999999999665532 11678887
No 123
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.02 E-value=1.2e-05 Score=78.06 Aligned_cols=128 Identities=17% Similarity=0.047 Sum_probs=96.0
Q ss_pred CCCcHHHHHHHcCChHHHHHHHhCCC----CccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHH
Q 041054 12 RGATPLHLAARQRRPECVHILLDSGA----LVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPY 87 (298)
Q Consensus 12 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga----~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 87 (298)
.+.--...|+..|+.-.|+..++... ++|..+. -|+++|++|+.+.+.+++++|+++.... .| +|
T Consensus 24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~----lGr~al~iai~nenle~~eLLl~~~~~~--gd-----AL 92 (822)
T KOG3609|consen 24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDP----LGRLALHIAIDNENLELQELLLDTSSEE--GD-----AL 92 (822)
T ss_pred hhhHHHHHHHHcCChHHHHHHHHhccccccchhccCh----HhhhceecccccccHHHHHHHhcCcccc--ch-----HH
Confidence 34445678999999999999988643 3444554 8999999999999999999999997665 33 89
Q ss_pred HHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCC
Q 041054 88 AVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTA 150 (298)
Q Consensus 88 ~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~ 150 (298)
-+|+..+...++++++.+.....-.......-...-..+.|||..|+..++.|+++.|++.+.
T Consensus 93 L~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~ 155 (822)
T KOG3609|consen 93 LLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGH 155 (822)
T ss_pred HHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCC
Confidence 999999999999999988543211111111111223456799999999999999998876543
No 124
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=1.2e-06 Score=74.60 Aligned_cols=46 Identities=33% Similarity=0.858 Sum_probs=41.8
Q ss_pred CcccccccccccceEEeCCCchh-HHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEE
Q 041054 173 TELCCICFEQVCTIEVQDCGHQM-CAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVV 233 (298)
Q Consensus 173 ~~~C~IC~~~~~~~~~~~CGH~~-C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~ 233 (298)
..+|.||++.+.+-.+.+|||++ |.+|...+ .-||+||+.|.+.+-
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm---------------~eCPICRqyi~rvvr 346 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM---------------NECPICRQYIVRVVR 346 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc---------------ccCchHHHHHHHHHh
Confidence 67999999999999999999999 99999887 689999999987543
No 125
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=3.5e-06 Score=71.14 Aligned_cols=48 Identities=29% Similarity=0.726 Sum_probs=40.1
Q ss_pred CcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 173 TELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 173 ~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
.-.|.||++..-.....+|||.||..|++..|...+. ..||.||+.+.
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~---------~~CplCRak~~ 262 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKY---------EFCPLCRAKVY 262 (271)
T ss_pred ccceeeeecccCCcccccccchhhHHHHHHHHHhhcc---------ccCchhhhhcc
Confidence 3569999999999999999999999999986555442 66999997643
No 126
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.96 E-value=6.1e-06 Score=49.89 Aligned_cols=38 Identities=34% Similarity=0.947 Sum_probs=30.4
Q ss_pred cccccccccce-EEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccc
Q 041054 176 CCICFEQVCTI-EVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFC 224 (298)
Q Consensus 176 C~IC~~~~~~~-~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~c 224 (298)
|.||++...+. .+.+|||.+|.+|+..+-.. . ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~----------~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-N----------PKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-T----------SB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-c----------CCCcCC
Confidence 78999998887 78999999999999888444 2 689987
No 127
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.93 E-value=1.6e-05 Score=70.57 Aligned_cols=58 Identities=26% Similarity=0.201 Sum_probs=55.2
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCC
Q 041054 51 STPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAE 108 (298)
Q Consensus 51 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~ 108 (298)
.--|..|++.|..+.|+.|++.|.++|.+|....+||.+|..-||.+++++|+++||-
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi 94 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI 94 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence 4468899999999999999999999999999999999999999999999999999984
No 128
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.87 E-value=8.7e-05 Score=68.09 Aligned_cols=69 Identities=26% Similarity=0.382 Sum_probs=57.9
Q ss_pred ChHHHHHHHhCCCCccccCC--CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhc
Q 041054 25 RPECVHILLDSGALVCASTG--GYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKH 93 (298)
Q Consensus 25 ~~~~v~~Ll~~ga~~~~~~~--~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~ 93 (298)
-...|++|.+++++.|..-. ..+..-.|+||+|+..|..++|.+||+.|+|+..+|..|+||+.++...
T Consensus 403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nk 473 (591)
T KOG2505|consen 403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANK 473 (591)
T ss_pred chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccccH
Confidence 36788899999888765432 2334578999999999999999999999999999999999999998733
No 129
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.85 E-value=1.2e-05 Score=49.05 Aligned_cols=40 Identities=30% Similarity=0.766 Sum_probs=33.3
Q ss_pred cccccccccceE-EeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccc
Q 041054 176 CCICFEQVCTIE-VQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFC 224 (298)
Q Consensus 176 C~IC~~~~~~~~-~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~c 224 (298)
|.||++...... ..+|||.+|..|+..+..... ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~---------~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSG---------SVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTS---------SSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcC---------CccCCcC
Confidence 789999988887 999999999999999977422 2679887
No 130
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.85 E-value=9.3e-06 Score=50.47 Aligned_cols=40 Identities=33% Similarity=0.725 Sum_probs=31.8
Q ss_pred ccccccccc---cceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccc
Q 041054 175 LCCICFEQV---CTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCR 225 (298)
Q Consensus 175 ~C~IC~~~~---~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr 225 (298)
.|.||++.. ..+...+|||.||..|+..+-... ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-----------~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-----------NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-----------SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-----------CcCCccC
Confidence 589999876 357888899999999998885443 4899997
No 131
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.85 E-value=2.3e-05 Score=48.69 Aligned_cols=40 Identities=38% Similarity=0.904 Sum_probs=31.7
Q ss_pred cccccccc---cceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccc
Q 041054 176 CCICFEQV---CTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRS 226 (298)
Q Consensus 176 C~IC~~~~---~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~ 226 (298)
|.+|++.. ....+.+|||.+|..|+..+- .....||+|++
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-----------~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-----------GKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhc-----------CCCCCCcCCCC
Confidence 67777776 347888999999999998882 33478999984
No 132
>PHA02926 zinc finger-like protein; Provisional
Probab=97.84 E-value=6.3e-06 Score=68.01 Aligned_cols=62 Identities=23% Similarity=0.570 Sum_probs=44.1
Q ss_pred ccccCCCcccccccccccc---------eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEE
Q 041054 167 ISEASDTELCCICFEQVCT---------IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVV 233 (298)
Q Consensus 167 ~~~~~~~~~C~IC~~~~~~---------~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~ 233 (298)
+...+.+..|.||++..-. ....+|+|.||..|+..+..... .+.....||.||........
T Consensus 164 ~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~-----~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 164 VYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRR-----ETGASDNCPICRTRFRNITM 234 (242)
T ss_pred HHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhcc-----ccCcCCcCCCCcceeeeecc
Confidence 3455667899999987422 35668999999999987744321 23445789999987765443
No 133
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.76 E-value=3.2e-05 Score=47.68 Aligned_cols=44 Identities=32% Similarity=0.782 Sum_probs=33.0
Q ss_pred ccccccccc-cceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccc
Q 041054 175 LCCICFEQV-CTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228 (298)
Q Consensus 175 ~C~IC~~~~-~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I 228 (298)
.|.||++.. ......+|||.+|..|+..+... ....||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~----------~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS----------GKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHh----------CcCCCCCCCCcC
Confidence 388999887 44455569999999999877443 236799999764
No 134
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=8.4e-06 Score=71.95 Aligned_cols=49 Identities=33% Similarity=0.845 Sum_probs=42.4
Q ss_pred ccCCCcccccccccccceEEeCCCchh-HHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054 169 EASDTELCCICFEQVCTIEVQDCGHQM-CAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV 232 (298)
Q Consensus 169 ~~~~~~~C~IC~~~~~~~~~~~CGH~~-C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~ 232 (298)
+.+-...|.||.++.-...+.||||+. |..|...+ +.||+||+.|...+
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l---------------~~CPvCR~rI~~~~ 350 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHL---------------PQCPVCRQRIRLVR 350 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEEchHHHhhC---------------CCCchhHHHHHHHH
Confidence 445568999999999999999999999 88888777 77999999987654
No 135
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.60 E-value=5.3e-05 Score=69.17 Aligned_cols=52 Identities=23% Similarity=0.564 Sum_probs=41.9
Q ss_pred cccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 168 SEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 168 ~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
........|.||++.....+..+|||.||..|+..+... ...||.|+..+..
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-----------~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-----------QPKCPLCRAEDQE 72 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-----------CCCCCCCCCcccc
Confidence 344456799999999888889999999999999876322 2479999998764
No 136
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.53 E-value=0.00014 Score=43.10 Aligned_cols=39 Identities=33% Similarity=0.815 Sum_probs=31.0
Q ss_pred cccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccc
Q 041054 176 CCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFC 224 (298)
Q Consensus 176 C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~c 224 (298)
|.||++........+|||.+|..|+..+... ....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~----------~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKS----------GNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHh----------CcCCCCCC
Confidence 6789998888899999999999999776441 22568876
No 137
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.53 E-value=5.4e-05 Score=75.11 Aligned_cols=97 Identities=23% Similarity=0.223 Sum_probs=76.1
Q ss_pred CCcccCCCCCCcHHHHHHHcCChHHHHHHH-hCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcc----
Q 041054 4 RFVNIRDGRGATPLHLAARQRRPECVHILL-DSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLH---- 78 (298)
Q Consensus 4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll-~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~---- 78 (298)
......|.+|...+|+ |..++.++.-+|+ -.|..+++++. .|+||||||+..|+..++..|++.|++...
T Consensus 599 ~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~----~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdp 673 (975)
T KOG0520|consen 599 SGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDR----NGWTPLHWAAFRGREKLVASLIELGADPGAVTDP 673 (975)
T ss_pred cCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccC----CCCcccchHhhcCHHHHHHHHHHhccccccccCC
Confidence 3445667788888888 4556666665554 45888888888 899999999999999999999998886543
Q ss_pred --cccCCCcHHHHHHhcCcHHHHHHhccC
Q 041054 79 --RDVSGRIPYAVALKHKHGACAALLNPA 105 (298)
Q Consensus 79 --~d~~g~tpL~~A~~~~~~~~~~~Ll~~ 105 (298)
.+-.|.|+-.+|..+|+..+.-+|-+.
T Consensus 674 s~~~p~g~ta~~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 674 SPETPGGKTAADLARANGHKGIAGYLSEK 702 (975)
T ss_pred CCCCCCCCchhhhhhcccccchHHHHhhh
Confidence 334589999999999998888777554
No 138
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=8.2e-05 Score=65.30 Aligned_cols=56 Identities=25% Similarity=0.607 Sum_probs=46.5
Q ss_pred ccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054 169 EASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK 235 (298)
Q Consensus 169 ~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~ 235 (298)
..++...|.||...+.+.++.||+|+-|..|+...-.+. +.|-+|++.|....+..
T Consensus 418 p~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~-----------k~CFfCktTv~~~~ld~ 473 (489)
T KOG4692|consen 418 PDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC-----------KRCFFCKTTVIDVILDK 473 (489)
T ss_pred CCcccccCcceecccchhhccCCCCchHHHHHHHHHhcC-----------CeeeEecceeeehhccc
Confidence 335678999999999999999999999999998874444 78999999988654443
No 139
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.44 E-value=8.7e-05 Score=63.47 Aligned_cols=46 Identities=30% Similarity=0.644 Sum_probs=39.9
Q ss_pred CcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 173 TELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 173 ~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
...|.||-+........+|||.||.-|+... --.++.||.||.+--
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~h-----------L~~qp~CP~Cr~~~~ 70 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRH-----------LGTQPFCPVCREDPC 70 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHH-----------hcCCCCCccccccHH
Confidence 4689999999999999999999999999877 445689999997654
No 140
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.36 E-value=0.00021 Score=62.61 Aligned_cols=55 Identities=27% Similarity=0.607 Sum_probs=47.7
Q ss_pred CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK 235 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~ 235 (298)
+.+.|.||.....-....||+|++|..|.+++.+-.+. .-|++||+.-...+...
T Consensus 60 en~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~---------K~C~~CrTE~e~V~fT~ 114 (493)
T COG5236 60 ENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQ---------KGCPLCRTETEAVVFTA 114 (493)
T ss_pred ccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhc---------cCCCccccccceEEEec
Confidence 56899999999999999999999999999998776653 78999998887776654
No 141
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.35 E-value=0.00017 Score=63.26 Aligned_cols=50 Identities=24% Similarity=0.546 Sum_probs=36.0
Q ss_pred Cccccccccc---ccc--eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054 173 TELCCICFEQ---VCT--IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV 232 (298)
Q Consensus 173 ~~~C~IC~~~---~~~--~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~ 232 (298)
...|.+|... ... ..+.+|||.+|..|+..++.... ..||.|+..+..--
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~----------~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGS----------GSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCC----------CCCCCCCCccchhh
Confidence 4689999984 222 12237999999999999864432 58999998777543
No 142
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=97.34 E-value=0.00039 Score=37.53 Aligned_cols=27 Identities=52% Similarity=0.834 Sum_probs=13.1
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCC
Q 041054 50 GSTPLHLAARGGSIDCIRELLAWGADR 76 (298)
Q Consensus 50 g~TpLh~A~~~g~~~~v~~Ll~~gad~ 76 (298)
|.||||+|+..++.+++++|++.|.++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~ 28 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGADI 28 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 344555555555555555555444433
No 143
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=97.31 E-value=0.00046 Score=37.20 Aligned_cols=29 Identities=52% Similarity=0.715 Sum_probs=23.9
Q ss_pred CCCcHHHHHHHcCChHHHHHHHhCCCCcc
Q 041054 12 RGATPLHLAARQRRPECVHILLDSGALVC 40 (298)
Q Consensus 12 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~ 40 (298)
.|.||||+|+..++.++++.|++.+.+++
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 47888999988899999999888877654
No 144
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.31 E-value=9.2e-05 Score=64.65 Aligned_cols=52 Identities=29% Similarity=0.611 Sum_probs=43.8
Q ss_pred CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEE
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVV 234 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~ 234 (298)
...-|.||++-+......||||.||.-|+..+ ---++.||.|+.++.+..+.
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~-----------L~~~p~CP~C~~~~~Es~Lr 73 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKF-----------LSYKPQCPTCCVTVTESDLR 73 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHH-----------hccCCCCCceecccchhhhh
Confidence 35689999999999999999999999999887 33458899999888766554
No 145
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.21 E-value=0.00018 Score=44.21 Aligned_cols=31 Identities=39% Similarity=0.759 Sum_probs=20.0
Q ss_pred cccccccccc----eEEeCCCchhHHHHHHHHhhcC
Q 041054 176 CCICFEQVCT----IEVQDCGHQMCAQCTLALCCHN 207 (298)
Q Consensus 176 C~IC~~~~~~----~~~~~CGH~~C~~C~~~l~~~~ 207 (298)
|.||.+ ..+ ....+|||.+|..|+..+....
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 678888 555 6778899999999999997755
No 146
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.16 E-value=0.00047 Score=46.17 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=39.3
Q ss_pred cccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 174 ELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 174 ~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
..|.||.+...+.+..+|||.+|..|+..+... ...||+|+..++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-----------~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-----------HGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-----------CCCCCCCcCCCCh
Confidence 469999999999999999999999999888544 2679999988754
No 147
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.07 E-value=0.00048 Score=47.74 Aligned_cols=42 Identities=33% Similarity=0.792 Sum_probs=30.8
Q ss_pred Ccccccccccc-------------cceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccc
Q 041054 173 TELCCICFEQV-------------CTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCR 225 (298)
Q Consensus 173 ~~~C~IC~~~~-------------~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr 225 (298)
.+.|.||++.. +.+...+|||.|...|+..+- .....||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl-----------~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWL-----------KQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHH-----------TTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHH-----------hcCCcCCCCC
Confidence 34599998876 556777899999999997773 2235899997
No 148
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.92 E-value=0.0003 Score=45.00 Aligned_cols=46 Identities=26% Similarity=0.548 Sum_probs=37.2
Q ss_pred CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
.+..|..|......-.+.||||.+|..|-- ......||+|.+.|..
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~-------------~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFP-------------GERYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccceeeccccC-------------hhhccCCCCCCCcccC
Confidence 356788999998889999999999999972 2345789999988753
No 149
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.001 Score=59.01 Aligned_cols=45 Identities=31% Similarity=0.723 Sum_probs=39.1
Q ss_pred CCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccc
Q 041054 171 SDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRS 226 (298)
Q Consensus 171 ~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~ 226 (298)
.++..|.||++........+|||.+|..|+..++. ....||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-----------~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-----------GPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcCccccccchHhHHHHHHhcC-----------CCcCCcccCC
Confidence 35789999999998889999999999999988855 2389999994
No 150
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0015 Score=56.57 Aligned_cols=57 Identities=21% Similarity=0.417 Sum_probs=45.3
Q ss_pred CcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEEeecC
Q 041054 173 TELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQ 239 (298)
Q Consensus 173 ~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~~~~~ 239 (298)
...|.||....-..+..+|+|.||--|+...-...+ ..|++||.+|.+....+-...
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk----------~~CavCR~pids~i~~~psl~ 63 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDK----------KTCAVCRFPIDSTIDFEPSLK 63 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCC----------CCCceecCCCCcchhcchhhh
Confidence 467999999988889999999999999966633333 459999999998877654443
No 151
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.0021 Score=55.63 Aligned_cols=51 Identities=27% Similarity=0.600 Sum_probs=38.6
Q ss_pred cccCCCcccccccccccc---eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccc
Q 041054 168 SEASDTELCCICFEQVCT---IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228 (298)
Q Consensus 168 ~~~~~~~~C~IC~~~~~~---~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I 228 (298)
.+....-.|.||++..-. ..+.||.|.|-..|+..+--.-+ -+||+||++|
T Consensus 318 ~ea~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~----------~~CPvCrt~i 371 (374)
T COG5540 318 VEADKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYS----------NKCPVCRTAI 371 (374)
T ss_pred HhcCCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhc----------ccCCccCCCC
Confidence 344555789999998643 68899999998889866633233 6899999876
No 152
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0013 Score=55.04 Aligned_cols=46 Identities=35% Similarity=0.707 Sum_probs=38.9
Q ss_pred cccccccccccceEEeCCCchh-HHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEE
Q 041054 174 ELCCICFEQVCTIEVQDCGHQM-CAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVV 234 (298)
Q Consensus 174 ~~C~IC~~~~~~~~~~~CGH~~-C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~ 234 (298)
..|..|.+....+...||.|.. |..|...+ ..||+|+..+...+.+
T Consensus 159 ~~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~---------------~~CPiC~~~~~s~~~v 205 (207)
T KOG1100|consen 159 RSCRKCGEREATVLLLPCRHLCLCGICDESL---------------RICPICRSPKTSSVEV 205 (207)
T ss_pred ccceecCcCCceEEeecccceEecccccccC---------------ccCCCCcChhhceeec
Confidence 3499999999999999999999 99998434 6699999888776544
No 153
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.26 E-value=0.0059 Score=56.44 Aligned_cols=56 Identities=34% Similarity=0.449 Sum_probs=46.9
Q ss_pred CCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHH
Q 041054 9 RDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLA 71 (298)
Q Consensus 9 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~ 71 (298)
.|..--|+||+|+.+|..++|.+||+.|+|+...+. .|.||..+++ +.++-..++.
T Consensus 426 ~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~----~Grtpy~ls~---nkdVk~~F~a 481 (591)
T KOG2505|consen 426 NDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDG----AGRTPYSLSA---NKDVKSIFIA 481 (591)
T ss_pred cccccchHHHHHHhcchHHHHHHHHHhcCCchhccc----CCCCcccccc---cHHHHHHHHH
Confidence 344567999999999999999999999999999998 8999999987 4555554543
No 154
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.002 Score=62.43 Aligned_cols=54 Identities=20% Similarity=0.559 Sum_probs=44.2
Q ss_pred cccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 166 NISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 166 ~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
.+....+...|.+|..+.-+.+...|||.||..|....-. .+..+||.|-....
T Consensus 636 Elk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~e----------tRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 636 ELKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYE----------TRQRKCPKCNAAFG 689 (698)
T ss_pred HHHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHH----------HhcCCCCCCCCCCC
Confidence 3566777899999999999999999999999999965522 34589999997654
No 155
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.0039 Score=55.44 Aligned_cols=48 Identities=23% Similarity=0.651 Sum_probs=37.1
Q ss_pred CCCcccccccccccc-------------eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 171 SDTELCCICFEQVCT-------------IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 171 ~~~~~C~IC~~~~~~-------------~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
.+...|.||+|..-. +...||||.+--+|+..++-.. ..||.||.+++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-----------QTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-----------QTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-----------cCCCcccCccc
Confidence 345789999998322 3567899999999998874444 78999999965
No 156
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.0039 Score=55.98 Aligned_cols=60 Identities=25% Similarity=0.566 Sum_probs=45.0
Q ss_pred CCCcccccccccccceE-----E---eCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEE
Q 041054 171 SDTELCCICFEQVCTIE-----V---QDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVV 234 (298)
Q Consensus 171 ~~~~~C~IC~~~~~~~~-----~---~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~ 234 (298)
+....|.||++...... + .+|-|.+|..|+..+-+... ..+.....||+||..+......
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q----~~~~~sksCP~CRv~s~~v~pS 226 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQ----FESKTSKSCPFCRVPSSFVNPS 226 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhc----cccccccCCCcccCcccccccc
Confidence 45689999999977766 5 77999999999977622111 1466779999999887765444
No 157
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.67 E-value=0.0054 Score=49.82 Aligned_cols=46 Identities=26% Similarity=0.613 Sum_probs=38.0
Q ss_pred cccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 174 ELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 174 ~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
-.|.||...-...++..|||.||..|.+.-.... ..|-+|+...-.
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg-----------~~C~~Cgk~t~G 242 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG-----------DECGVCGKATYG 242 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhccC-----------Ccceecchhhcc
Confidence 5899999999999999999999999998773333 679999865443
No 158
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.0061 Score=55.89 Aligned_cols=51 Identities=27% Similarity=0.716 Sum_probs=41.8
Q ss_pred CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEE
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVV 233 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~ 233 (298)
.+-.|.||+......+..||||.+|..|+.+. .+ ....||.||.++.++..
T Consensus 83 sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~-ld----------~~~~cp~Cr~~l~e~~~ 133 (398)
T KOG4159|consen 83 SEFECCVCSRALYPPVVTPCGHSFCLECLDRS-LD----------QETECPLCRDELVELPA 133 (398)
T ss_pred chhhhhhhHhhcCCCccccccccccHHHHHHH-hc----------cCCCCcccccccccchH
Confidence 45789999999999999999999999998774 22 33789999999886433
No 159
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.0059 Score=54.67 Aligned_cols=47 Identities=26% Similarity=0.653 Sum_probs=34.3
Q ss_pred ccccccccccc---ceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 174 ELCCICFEQVC---TIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 174 ~~C~IC~~~~~---~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
..|+||+|.-. .+...||.|.+-..|.- .|. +.....||+|++.|-.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CID-----pWL-----~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCID-----PWL-----TQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccch-----hhH-----hhcCccCCCCCCcCCC
Confidence 59999999744 47889999999777773 232 2233679999985544
No 160
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.0072 Score=58.41 Aligned_cols=51 Identities=29% Similarity=0.696 Sum_probs=41.1
Q ss_pred CCcccccccccccc-----eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEE
Q 041054 172 DTELCCICFEQVCT-----IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVV 233 (298)
Q Consensus 172 ~~~~C~IC~~~~~~-----~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~ 233 (298)
..+.|.||.+.... ....+|||.++..|+..+..-. ..||+||..+..-..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~-----------qtCP~CR~~~~~~~~ 345 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ-----------QTCPTCRTVLYDYVL 345 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh-----------CcCCcchhhhhcccc
Confidence 46899999999888 7899999999999998884443 689999984443333
No 161
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.0077 Score=52.06 Aligned_cols=48 Identities=25% Similarity=0.501 Sum_probs=39.2
Q ss_pred cccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054 174 ELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV 232 (298)
Q Consensus 174 ~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~ 232 (298)
..|.||....-..++..|||.||..|.+.- -.....|++|.+++-...
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~-----------~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKP-----------YQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccc-----------cccCCcceeccccccccc
Confidence 569999999999999999999999999666 222368999997765443
No 162
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=94.96 E-value=0.023 Score=39.30 Aligned_cols=53 Identities=21% Similarity=0.199 Sum_probs=39.1
Q ss_pred CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEE
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVV 234 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~ 234 (298)
++..|.|+.+-..+.+..++||.++..|+...-... +..||+|+..+....+.
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~----------~~~~P~t~~~l~~~~l~ 55 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQN----------GGTDPFTRQPLSESDLI 55 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTT----------SSB-TTT-SB-SGGGSE
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcC----------CCCCCCCCCcCCcccce
Confidence 567899999999999999999999999998874442 47899999888864433
No 163
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.0063 Score=53.89 Aligned_cols=54 Identities=20% Similarity=0.543 Sum_probs=40.1
Q ss_pred cccCCCcccccccccccc-eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054 168 SEASDTELCCICFEQVCT-IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL 231 (298)
Q Consensus 168 ~~~~~~~~C~IC~~~~~~-~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~ 231 (298)
........|.||++-... +....|+|.||.+|+...-...+ .-||.||+..+.-
T Consensus 38 ~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn----------~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 38 AMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGN----------NECPTCRKKLVSK 92 (381)
T ss_pred HHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcC----------CCCchHHhhcccc
Confidence 444456789999997554 55666999999999976644444 6899999877643
No 164
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=94.79 E-value=0.029 Score=42.78 Aligned_cols=49 Identities=29% Similarity=0.648 Sum_probs=40.4
Q ss_pred CcccccccccccceEEeC----CCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 173 TELCCICFEQVCTIEVQD----CGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 173 ~~~C~IC~~~~~~~~~~~----CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
.-.|.||.+...+..+.. ||-..|-.|-..||.+.. +++.||.|++...
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~--------~ypvCPvCkTSFK 132 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCN--------LYPVCPVCKTSFK 132 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcc--------cCCCCCccccccc
Confidence 467999999887765544 999999999999998886 6899999996543
No 165
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=94.51 E-value=0.071 Score=37.69 Aligned_cols=37 Identities=22% Similarity=0.568 Sum_probs=26.5
Q ss_pred ceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 185 TIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 185 ~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
.++.-.|+|.|-..|++..-.... ....||.||++..
T Consensus 46 plv~g~C~H~FH~hCI~kWl~~~~--------~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 46 PLVWGKCSHNFHMHCILKWLSTQS--------SKGQCPMCRQPWK 82 (85)
T ss_pred ceeeccCccHHHHHHHHHHHcccc--------CCCCCCCcCCeee
Confidence 345556999999999988733321 1369999998653
No 166
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=94.32 E-value=0.0098 Score=39.46 Aligned_cols=43 Identities=26% Similarity=0.685 Sum_probs=20.6
Q ss_pred CcccccccccccceE-EeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccc
Q 041054 173 TELCCICFEQVCTIE-VQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228 (298)
Q Consensus 173 ~~~C~IC~~~~~~~~-~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I 228 (298)
...|.+|.+-...++ ...|.|.||..|+-.. ....||+|+.+-
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~-------------~~~~CPvC~~Pa 50 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDC-------------IGSECPVCHTPA 50 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGG-------------TTTB-SSS--B-
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHh-------------cCCCCCCcCChH
Confidence 356889998877764 6889999999999332 113599999654
No 167
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=94.30 E-value=0.22 Score=41.90 Aligned_cols=95 Identities=15% Similarity=0.061 Sum_probs=65.5
Q ss_pred CCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHH--cCCHHHHHHHHHcC-CCCcc---cccCCCcH
Q 041054 13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAAR--GGSIDCIRELLAWG-ADRLH---RDVSGRIP 86 (298)
Q Consensus 13 G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~--~g~~~~v~~Ll~~g-ad~~~---~d~~g~tp 86 (298)
-.++|-+|..++..+++.+||.+= ....++-..=..+.--+-|+.. ..+..+++++|++| +++|. +-+.|.|-
T Consensus 179 A~~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtM 257 (284)
T PF06128_consen 179 AHQAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTM 257 (284)
T ss_pred HHHHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchH
Confidence 457888888888999999998751 1111110000012333444433 45677889999987 45654 45679999
Q ss_pred HHHHHhcCcHHHHHHhccCCCC
Q 041054 87 YAVALKHKHGACAALLNPASAE 108 (298)
Q Consensus 87 L~~A~~~~~~~~~~~Ll~~ga~ 108 (298)
|.-|++.++.+++.+|+++||-
T Consensus 258 LDNA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 258 LDNAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred HHhHHhcCcHHHHHHHHHcCcc
Confidence 9999999999999999999994
No 168
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=93.87 E-value=0.11 Score=48.54 Aligned_cols=62 Identities=16% Similarity=0.348 Sum_probs=44.7
Q ss_pred cccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054 168 SEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK 235 (298)
Q Consensus 168 ~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~ 235 (298)
.+..++..|.+|.+..-+.....|-|.||.-|+...--.- .-.....||.|+.+++-.+..+
T Consensus 531 ~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f------~~~~nvtCP~C~i~LsiDlse~ 592 (791)
T KOG1002|consen 531 DENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESF------MENNNVTCPVCHIGLSIDLSEP 592 (791)
T ss_pred ccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhh------hcccCCCCccccccccccccch
Confidence 3455678999999999999999999999999994331110 0112278999998877554443
No 169
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=93.02 E-value=0.18 Score=39.83 Aligned_cols=64 Identities=22% Similarity=0.442 Sum_probs=41.1
Q ss_pred CcccccccccccceEEeCCC-------chhH------HHHHHHHhhcCC-CCCCC-------------------CCCCCC
Q 041054 173 TELCCICFEQVCTIEVQDCG-------HQMC------AQCTLALCCHNK-PNPTT-------------------ACLTPP 219 (298)
Q Consensus 173 ~~~C~IC~~~~~~~~~~~CG-------H~~C------~~C~~~l~~~~~-~~~~~-------------------~~~~~~ 219 (298)
...|.|||+.+-..+..-|. -.+| ..|+-.+..... ..+.. ......
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 81 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL 81 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence 35799999998887766632 2222 567766543321 11111 133578
Q ss_pred CCcccccccceeEEEEe
Q 041054 220 VCPFCRSTIAHLVVVKI 236 (298)
Q Consensus 220 ~Cp~cr~~I~~~~~~~~ 236 (298)
+||+||.+|..+.++..
T Consensus 82 ~CPLCRG~V~GWtvve~ 98 (162)
T PF07800_consen 82 ACPLCRGEVKGWTVVEP 98 (162)
T ss_pred cCccccCceeceEEchH
Confidence 99999999999999864
No 170
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.55 E-value=0.087 Score=44.57 Aligned_cols=42 Identities=33% Similarity=0.828 Sum_probs=28.2
Q ss_pred cccccccc--ccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 175 LCCICFEQ--VCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 175 ~C~IC~~~--~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
.|..|.-. .-..-...|+|.+|..|.-.- ....||.|+..|.
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~-------------~~~~C~lCkk~ir 48 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKAS-------------SPDVCPLCKKSIR 48 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccC-------------Cccccccccceee
Confidence 35555544 334566779999999999222 1228999998844
No 171
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=92.24 E-value=0.063 Score=49.69 Aligned_cols=49 Identities=31% Similarity=0.729 Sum_probs=39.9
Q ss_pred CCcccccccccccceEEe-CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054 172 DTELCCICFEQVCTIEVQ-DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL 231 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~-~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~ 231 (298)
+...|.+|..-..+.... .|||.+|..|+... ...+..||.|+..+..-
T Consensus 20 ~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~-----------~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDPVQTTTCGHRFCAGCLLES-----------LSNHQKCPVCRQELTQA 69 (391)
T ss_pred ccccCccccccccCCCCCCCCCCcccccccchh-----------hccCcCCcccccccchh
Confidence 457899999999998884 99999999999666 33478999998766543
No 172
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=92.19 E-value=0.052 Score=52.98 Aligned_cols=54 Identities=17% Similarity=0.406 Sum_probs=39.5
Q ss_pred Ccccccccccccc---eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEEee
Q 041054 173 TELCCICFEQVCT---IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIE 237 (298)
Q Consensus 173 ~~~C~IC~~~~~~---~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~~~ 237 (298)
...|.+|+....+ ....+|+|.||..|+..++... ..||.||....+..+..-.
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a-----------qTCPiDR~EF~~v~V~eS~ 179 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA-----------QTCPVDRGEFGEVKVLEST 179 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc-----------ccCchhhhhhheeeeeccc
Confidence 4567777665443 4556699999999998884444 6899999988887776433
No 173
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=91.73 E-value=0.39 Score=40.43 Aligned_cols=53 Identities=21% Similarity=0.192 Sum_probs=42.5
Q ss_pred cCChHHHHHHHhCC-CCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCC
Q 041054 23 QRRPECVHILLDSG-ALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADR 76 (298)
Q Consensus 23 ~g~~~~v~~Ll~~g-a~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~ 76 (298)
..+..+++++|.+| +++|..-...+ .|.|-|--|...++.+++.+||++||-.
T Consensus 227 ~a~~kvL~~Fi~~Glv~vN~~F~~~N-SGdtMLDNA~Ky~~~emi~~Llk~GA~~ 280 (284)
T PF06128_consen 227 SASYKVLEYFINRGLVDVNKKFQKVN-SGDTMLDNAMKYKNSEMIAFLLKYGAIS 280 (284)
T ss_pred CCcHHHHHHHHhccccccchhhhccC-CcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence 34678888889887 56775443322 7999999999999999999999999854
No 174
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.06 E-value=0.18 Score=43.39 Aligned_cols=54 Identities=22% Similarity=0.543 Sum_probs=39.5
Q ss_pred cCCCcccccccccccceE-EeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054 170 ASDTELCCICFEQVCTIE-VQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV 232 (298)
Q Consensus 170 ~~~~~~C~IC~~~~~~~~-~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~ 232 (298)
.+....|.+|-+.+..+- ..+|||..|--|+..-+... ....||.|......+.
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~---------asf~Cp~Cg~~~~~lq 290 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWD---------ASFTCPLCGENVEPLQ 290 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcch---------hhcccCccCCCCcchh
Confidence 345678999999888764 45599999999996653322 2367999998776554
No 175
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.66 E-value=0.14 Score=45.33 Aligned_cols=46 Identities=33% Similarity=0.727 Sum_probs=36.1
Q ss_pred CCcccccccccccc-eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054 172 DTELCCICFEQVCT-IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL 231 (298)
Q Consensus 172 ~~~~C~IC~~~~~~-~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~ 231 (298)
+...|.||++.... +-+-+-||..|..|...+ ...||+||.+|..+
T Consensus 47 ~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~--------------~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV--------------SNKCPTCRLPIGNI 93 (299)
T ss_pred hhccCchhhccCcccceecCCCcEehhhhhhhh--------------cccCCccccccccH
Confidence 45789999998655 455567999999999444 58899999988743
No 176
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.54 E-value=0.14 Score=50.59 Aligned_cols=52 Identities=23% Similarity=0.712 Sum_probs=41.1
Q ss_pred cccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054 174 ELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK 235 (298)
Q Consensus 174 ~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~ 235 (298)
..|.+|++ .......+|||.+|.+|+...--.... ..||.||..|.+..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~---------~~~~~cr~~l~~~~l~s 506 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSEN---------APCPLCRNVLKEKKLLS 506 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccC---------CCCcHHHHHHHHHHHhh
Confidence 78999999 777889999999999999776333321 28999999988765554
No 177
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=90.51 E-value=0.033 Score=38.14 Aligned_cols=56 Identities=20% Similarity=0.430 Sum_probs=22.6
Q ss_pred ccccccccccc------ceEEe--CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 174 ELCCICFEQVC------TIEVQ--DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 174 ~~C~IC~~~~~------~~~~~--~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
..|.||+...- .+... .|+..+=..||..+-...........+....||+|+.+|+
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 46888987643 12222 3776666667655544332222223566778999999885
No 178
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.66 E-value=0.17 Score=43.40 Aligned_cols=49 Identities=22% Similarity=0.660 Sum_probs=38.4
Q ss_pred CCcccccccccccceE----------EeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 172 DTELCCICFEQVCTIE----------VQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~----------~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
+...|.+|-.+.-..+ ...|+|.+-..|+...|--++. +.||+|+..|.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKk---------qtCPYCKekVd 281 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKK---------QTCPYCKEKVD 281 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCC---------CCCchHHHHhh
Confidence 3578999988754433 3449999999999999888875 89999997664
No 179
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.08 E-value=0.18 Score=50.41 Aligned_cols=52 Identities=25% Similarity=0.623 Sum_probs=38.9
Q ss_pred ccCCCccccccccccc-------ceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 169 EASDTELCCICFEQVC-------TIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 169 ~~~~~~~C~IC~~~~~-------~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
..++.+.|.||..-.. ...+.-|.|.+-..|+..+.+.+.. -.||.||..|+
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~---------s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSAR---------SNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCC---------CCCCccccccc
Confidence 3456789999976433 3344459999999999888666653 68999998875
No 180
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=88.97 E-value=0.58 Score=32.45 Aligned_cols=47 Identities=21% Similarity=0.145 Sum_probs=26.0
Q ss_pred hHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccC
Q 041054 52 TPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPA 105 (298)
Q Consensus 52 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ 105 (298)
.-|..|+..|+.|+++.+++.+ .++ ...+..|+...+.+++++|++.
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence 3456666666666666666543 111 2246666666666666666554
No 181
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.84 E-value=0.31 Score=42.36 Aligned_cols=43 Identities=23% Similarity=0.532 Sum_probs=30.9
Q ss_pred cccccccccccceEEe-CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccc
Q 041054 174 ELCCICFEQVCTIEVQ-DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRS 226 (298)
Q Consensus 174 ~~C~IC~~~~~~~~~~-~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~ 226 (298)
..|..|..-.....-. -|||.+|.+|+-..--.++ ..||.|++
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsD----------f~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSD----------FKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhcc----------ccCCCccc
Confidence 5777766554444444 5999999999965544455 89999997
No 182
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=87.63 E-value=0.51 Score=29.54 Aligned_cols=28 Identities=32% Similarity=0.800 Sum_probs=15.4
Q ss_pred CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccc
Q 041054 190 DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRST 227 (298)
Q Consensus 190 ~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~ 227 (298)
+||++.|..|...+-.+. .-.||-||.+
T Consensus 19 ~Cgf~IC~~C~~~i~~~~----------~g~CPgCr~~ 46 (48)
T PF14570_consen 19 ECGFQICRFCYHDILENE----------GGRCPGCREP 46 (48)
T ss_dssp TTS----HHHHHHHTTSS-----------SB-TTT--B
T ss_pred cCCCcHHHHHHHHHHhcc----------CCCCCCCCCC
Confidence 499999999998884433 3789999975
No 183
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=87.47 E-value=0.27 Score=51.43 Aligned_cols=64 Identities=25% Similarity=0.571 Sum_probs=48.6
Q ss_pred cCCCccccccccc---ccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEE
Q 041054 170 ASDTELCCICFEQ---VCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVV 234 (298)
Q Consensus 170 ~~~~~~C~IC~~~---~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~ 234 (298)
......|.||+.. .+.....+|+|.|-.+|...+--.-|..|.. +-....||.|..+|....+.
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRI-tF~FisCPiC~n~InH~~Lk 3549 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRI-TFGFISCPICKNKINHIVLK 3549 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCee-EEeeeecccccchhhhHHHH
Confidence 3445899999976 4557888999999888887776666754433 45667899999999977654
No 184
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.09 E-value=0.36 Score=42.90 Aligned_cols=30 Identities=40% Similarity=1.065 Sum_probs=26.2
Q ss_pred eCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccc
Q 041054 189 QDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228 (298)
Q Consensus 189 ~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I 228 (298)
..|||.+|..|+..+....+ +.||+||.+.
T Consensus 25 l~c~h~~c~~c~~~l~~~~~----------i~cpfcR~~~ 54 (296)
T KOG4185|consen 25 LKCGHTICQNCASKLLGNSR----------ILCPFCRETT 54 (296)
T ss_pred cccCceehHhHHHHHhcCce----------eeccCCCCcc
Confidence 33999999999999977777 7899999885
No 185
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=86.97 E-value=1.3 Score=30.57 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=40.3
Q ss_pred CcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHc
Q 041054 14 ATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72 (298)
Q Consensus 14 ~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ 72 (298)
..-|.+|+..|+.++++.+++.+ .+ -...|..|+..-+-+++++|++.
T Consensus 7 ~~tl~~Ai~GGN~eII~~c~~~~-~~----------~~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 7 KKTLEYAIIGGNFEIINICLKKN-KP----------DNDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh-cc----------HHHHHHHHHHHhhHHHHHHHHHh
Confidence 34689999999999999999765 11 13579999999999999999987
No 186
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.00 E-value=0.86 Score=42.53 Aligned_cols=50 Identities=28% Similarity=0.608 Sum_probs=35.1
Q ss_pred cCCCcccccccccccc-----------------eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 170 ASDTELCCICFEQVCT-----------------IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 170 ~~~~~~C~IC~~~~~~-----------------~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
......|.||+..... .-+.||-|.+-.+|++..--.-+ -.||.||.++-
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~yk----------l~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYK----------LICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhc----------ccCCccCCCCC
Confidence 3456789999976332 22458999999999987722122 48999998764
No 187
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.08 E-value=0.72 Score=42.08 Aligned_cols=49 Identities=24% Similarity=0.545 Sum_probs=32.6
Q ss_pred cccccccccccc---eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccc
Q 041054 174 ELCCICFEQVCT---IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCR 225 (298)
Q Consensus 174 ~~C~IC~~~~~~---~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr 225 (298)
-.|.||++...- +.+.||+|.+|..|+...--..- ..+......||-+.
T Consensus 185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i---~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQI---QEGQVSCLKCPDPK 236 (445)
T ss_pred ccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhh---hcceeeeecCCCCC
Confidence 579999987543 78999999999999865422211 11234446676544
No 188
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=83.93 E-value=2.3 Score=26.77 Aligned_cols=42 Identities=19% Similarity=0.509 Sum_probs=28.5
Q ss_pred ccccccc--cccceEEeCCC-----chhHHHHHHHHhhcCCCCCCCCCCCCCCCcccc
Q 041054 175 LCCICFE--QVCTIEVQDCG-----HQMCAQCTLALCCHNKPNPTTACLTPPVCPFCR 225 (298)
Q Consensus 175 ~C~IC~~--~~~~~~~~~CG-----H~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr 225 (298)
.|.||++ ........||. |.+=..|+..+-.... ...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~---------~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESG---------NKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcC---------CCcCCCCC
Confidence 4889986 44556788885 6777778766644332 14799885
No 189
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=83.51 E-value=1 Score=40.01 Aligned_cols=49 Identities=24% Similarity=0.575 Sum_probs=35.3
Q ss_pred CCcccccccccccc--eE--EeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 172 DTELCCICFEQVCT--IE--VQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 172 ~~~~C~IC~~~~~~--~~--~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
++..|..|++..-. .. .-+||-++|.-|.-.+-.+- .-+||-||+....
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~l----------ngrcpacrr~y~d 65 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNL----------NGRCPACRRKYDD 65 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhc----------cCCChHhhhhccc
Confidence 45669999987432 23 34589999999997774443 3789999987664
No 190
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.91 E-value=0.89 Score=41.94 Aligned_cols=34 Identities=21% Similarity=0.552 Sum_probs=25.9
Q ss_pred cCCCcccccccccccc----eEEeCCCchhHHHHHHHH
Q 041054 170 ASDTELCCICFEQVCT----IEVQDCGHQMCAQCTLAL 203 (298)
Q Consensus 170 ~~~~~~C~IC~~~~~~----~~~~~CGH~~C~~C~~~l 203 (298)
..+...|.||+++.-. +....|-|.|=.+|+..+
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w 209 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW 209 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhc
Confidence 3456789999998543 578889999966888555
No 191
>PF04641 Rtf2: Rtf2 RING-finger
Probab=82.76 E-value=1.4 Score=38.42 Aligned_cols=59 Identities=14% Similarity=0.353 Sum_probs=45.2
Q ss_pred CCCcccccccccc----cceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEEeecCCC
Q 041054 171 SDTELCCICFEQV----CTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQED 241 (298)
Q Consensus 171 ~~~~~C~IC~~~~----~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~~~~~~~ 241 (298)
.....|.|..... ..+...+|||.++..++..+- . ...||.|..+....-++.++....
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~----------~~~Cp~c~~~f~~~DiI~Lnp~~e 173 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--K----------SKKCPVCGKPFTEEDIIPLNPPEE 173 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--c----------cccccccCCccccCCEEEecCCcc
Confidence 3457787776554 347778999999999998882 1 256999999999888888776555
No 192
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=82.75 E-value=1.1 Score=39.70 Aligned_cols=74 Identities=18% Similarity=0.418 Sum_probs=44.9
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCCcccccccCCCcccccccccccce-EEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCC
Q 041054 141 REKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTI-EVQDCGHQMCAQCTLALCCHNKPNPTTACLTPP 219 (298)
Q Consensus 141 ~~~~ll~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~-~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~ 219 (298)
..+++....+...|.|.+..- ..+...-..+.+.|.+|+....+. +..--|-.+|-.|....- ..+.
T Consensus 269 ~~~~~k~~l~~p~PpPPh~~~-~se~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv-----------~~~~ 336 (357)
T KOG0826|consen 269 NQRKIKSTLDPPIPPPPHKQY-NSESELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYV-----------VNYG 336 (357)
T ss_pred HHHhhccCCCCCCCcCChhhc-ccccccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHH-----------HhcC
Confidence 444455555555566553322 222234455678999999875553 333359999999997772 2456
Q ss_pred CCccccc
Q 041054 220 VCPFCRS 226 (298)
Q Consensus 220 ~Cp~cr~ 226 (298)
+||+=.-
T Consensus 337 ~CPVT~~ 343 (357)
T KOG0826|consen 337 HCPVTGY 343 (357)
T ss_pred CCCccCC
Confidence 7886443
No 193
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=81.83 E-value=2.9 Score=34.13 Aligned_cols=87 Identities=16% Similarity=0.122 Sum_probs=58.1
Q ss_pred CCCcHHHHHHHcCChHHHHHHHhCCCCccccC------CCCC-----------------CCCC-------hHHHHHHHcC
Q 041054 12 RGATPLHLAARQRRPECVHILLDSGALVCAST------GGYG-----------------CPGS-------TPLHLAARGG 61 (298)
Q Consensus 12 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~------~~~~-----------------~~g~-------TpLh~A~~~g 61 (298)
..++.+-.||+..+.++|+++-+.=.-.+..+ ...| ..+. .-|.+|+..|
T Consensus 75 ~~q~LFElAC~~qkydiV~WI~qnL~i~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kg 154 (192)
T PF03158_consen 75 LNQELFELACEEQKYDIVKWIGQNLHIYNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKG 154 (192)
T ss_pred HHHHHHHHHHHHccccHHHHHhhccCCCCchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCC
Confidence 34566778999999999999844311111000 0000 0011 1356788899
Q ss_pred CHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhcc
Q 041054 62 SIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNP 104 (298)
Q Consensus 62 ~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~ 104 (298)
-...|...+++|.+++. ++|..|+..++..++.+++.
T Consensus 155 ll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~ 191 (192)
T PF03158_consen 155 LLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR 191 (192)
T ss_pred CHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence 99988888899887754 68999999999998888764
No 194
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.31 E-value=1.8 Score=39.30 Aligned_cols=54 Identities=20% Similarity=0.431 Sum_probs=35.3
Q ss_pred Ccccccccccccce---EEe-CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEE
Q 041054 173 TELCCICFEQVCTI---EVQ-DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVV 234 (298)
Q Consensus 173 ~~~C~IC~~~~~~~---~~~-~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~ 234 (298)
...|.||.+-.... ... .|||.|-..|+..+-.... -...||.|+-..-...+.
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~P--------s~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDP--------SNRGCPICQIKLQERHVA 61 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCC--------ccCCCCceeecccceeee
Confidence 46799997665543 222 2999999999977733322 226899999555554444
No 195
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.01 E-value=2.3 Score=36.13 Aligned_cols=56 Identities=16% Similarity=0.297 Sum_probs=42.9
Q ss_pred cCCCcccccccccccc----eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEEe
Q 041054 170 ASDTELCCICFEQVCT----IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKI 236 (298)
Q Consensus 170 ~~~~~~C~IC~~~~~~----~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~~ 236 (298)
.+..-+|.+|.+.... ....+|||.+|..|...| -+.-..||+|..++..--++..
T Consensus 218 ~s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEkl-----------ir~D~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 218 ASKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKL-----------IRKDMVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred hccceecccchhhhcCccceEEeccCCcEeeHHHHHHh-----------ccccccccCCCCcCcccceEee
Confidence 3356789999887544 678899999999999888 4555789999988876655543
No 196
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=78.89 E-value=1.6 Score=37.97 Aligned_cols=31 Identities=26% Similarity=0.792 Sum_probs=23.8
Q ss_pred EEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccc
Q 041054 187 EVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRST 227 (298)
Q Consensus 187 ~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~ 227 (298)
-+.+|||.+|.+|.-.+-..+. ..||.|-..
T Consensus 19 ~in~C~H~lCEsCvd~iF~~g~----------~~CpeC~~i 49 (300)
T KOG3800|consen 19 MINECGHRLCESCVDRIFSLGP----------AQCPECMVI 49 (300)
T ss_pred eeccccchHHHHHHHHHHhcCC----------CCCCcccch
Confidence 3448999999999987744444 789988744
No 197
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=76.70 E-value=0.8 Score=40.59 Aligned_cols=50 Identities=20% Similarity=0.509 Sum_probs=37.2
Q ss_pred CCcccccccccccce-EEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054 172 DTELCCICFEQVCTI-EVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV 232 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~-~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~ 232 (298)
....|.+|..-.-+. -...|=|.||..|++..--. ...||.|...|-...
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-----------~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-----------SKYCPTCDIVIHKTH 64 (331)
T ss_pred cceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-----------hccCCccceeccCcc
Confidence 456788887765554 34459999999999888433 378999998877664
No 198
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=73.26 E-value=2.8 Score=41.56 Aligned_cols=62 Identities=13% Similarity=0.181 Sum_probs=41.8
Q ss_pred ccccCCCccccccccc----ccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEE
Q 041054 167 ISEASDTELCCICFEQ----VCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVV 233 (298)
Q Consensus 167 ~~~~~~~~~C~IC~~~----~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~ 233 (298)
.++......|.+|+.. .....+..|+|.+|..|+..+.-.-- .++.+..|+||..-|..+--
T Consensus 93 ~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~-----~~~k~c~H~FC~~Ci~sWsR 158 (1134)
T KOG0825|consen 93 TAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLE-----ESEKHTAHYFCEECVGSWSR 158 (1134)
T ss_pred cccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhh-----ccccccccccHHHHhhhhhh
Confidence 3444445677788777 44445556999999999977632222 36777888998887776543
No 199
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=70.60 E-value=3.8 Score=36.20 Aligned_cols=43 Identities=26% Similarity=0.505 Sum_probs=26.9
Q ss_pred ceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 185 TIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 185 ~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
+-.+.||||+. ..-....|+... -|...-.-+.+||||-+.++
T Consensus 372 thaF~PCGHv~-sekt~~YWs~ip-lPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 372 THAFNPCGHVC-SEKTVKYWSQIP-LPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred ccccCCccccc-chhhhhHhhcCc-CCCccccccccCcchhhhhc
Confidence 34567799975 444555555442 22222567889999997665
No 200
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=69.94 E-value=5.2 Score=27.68 Aligned_cols=50 Identities=22% Similarity=0.606 Sum_probs=20.6
Q ss_pred CCcccccccccccc-------eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054 172 DTELCCICFEQVCT-------IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL 231 (298)
Q Consensus 172 ~~~~C~IC~~~~~~-------~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~ 231 (298)
....|.||-+..-. +....|+--+|..|...=..... ..||.|++.-.+.
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~----------q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGN----------QVCPQCKTRYKRH 64 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-----------SB-TTT--B----
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCc----------ccccccCCCcccc
Confidence 35689999887442 45556888889999855544444 8999999665543
No 201
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=69.63 E-value=9.7 Score=31.20 Aligned_cols=45 Identities=20% Similarity=0.047 Sum_probs=39.6
Q ss_pred HHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHH
Q 041054 17 LHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLA 71 (298)
Q Consensus 17 Lh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~ 71 (298)
|..|+..|-...|...|++|.+++ .+.|..|+..++..++.+++.
T Consensus 147 l~~a~~kgll~F~letlkygg~~~----------~~vls~Av~ynhRkIL~yfi~ 191 (192)
T PF03158_consen 147 LEKAAAKGLLPFVLETLKYGGNVD----------IIVLSQAVKYNHRKILDYFIR 191 (192)
T ss_pred HHHHHHCCCHHHHHHHHHcCCccc----------HHHHHHHHHhhHHHHHHHhhc
Confidence 678999999999999999987653 389999999999999998874
No 202
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=68.82 E-value=4 Score=37.61 Aligned_cols=32 Identities=19% Similarity=0.523 Sum_probs=28.8
Q ss_pred CCcccccccccccceEEeCCCchhHHHHHHHH
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLAL 203 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l 203 (298)
++..|.||..-..+....+|||..|..|++..
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~ 34 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARNI 34 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHhh
Confidence 56789999998889999999999999999765
No 203
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=68.04 E-value=4.1 Score=37.08 Aligned_cols=50 Identities=22% Similarity=0.531 Sum_probs=35.1
Q ss_pred Ccccccccccc----cceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054 173 TELCCICFEQV----CTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL 231 (298)
Q Consensus 173 ~~~C~IC~~~~----~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~ 231 (298)
+.-|..|-+.. -.....||.|.|-..|+...--..- ...||.||.-++.+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~---------~rsCP~CrklrSs~ 418 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNG---------TRSCPNCRKLRSSM 418 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCC---------CCCCccHHHHHhhc
Confidence 46788887753 3467889999998888865532222 26799999666544
No 204
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=67.01 E-value=1.4 Score=37.33 Aligned_cols=48 Identities=25% Similarity=0.626 Sum_probs=32.0
Q ss_pred CCcccccccccc---cc--eEEeC-CCchhHHHHHHHHhhcCCCCCCCCCCCCCCCc--ccccccc
Q 041054 172 DTELCCICFEQV---CT--IEVQD-CGHQMCAQCTLALCCHNKPNPTTACLTPPVCP--FCRSTIA 229 (298)
Q Consensus 172 ~~~~C~IC~~~~---~~--~~~~~-CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp--~cr~~I~ 229 (298)
....|.+|.... ++ +..-| |-|.+|.+|.-++- +..+..|| -|..-+-
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIF----------s~GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIF----------SRGPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHh----------cCCCCCCCCccHHHHHH
Confidence 345799997542 22 33444 99999999998873 34457898 6765443
No 205
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=66.12 E-value=4.4 Score=27.92 Aligned_cols=30 Identities=33% Similarity=0.691 Sum_probs=19.5
Q ss_pred CCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccc
Q 041054 191 CGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228 (298)
Q Consensus 191 CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I 228 (298)
|-|.|-..|+++...... ....||.||++-
T Consensus 51 C~h~fh~hCI~~wl~~~t--------sq~~CPmcRq~~ 80 (84)
T KOG1493|consen 51 CLHAFHAHCILKWLNTPT--------SQGQCPMCRQTW 80 (84)
T ss_pred HHHHHHHHHHHHHhcCcc--------ccccCCcchhee
Confidence 777777777766532221 227899999753
No 206
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=64.14 E-value=16 Score=33.39 Aligned_cols=60 Identities=18% Similarity=0.426 Sum_probs=37.2
Q ss_pred CCcccccccccccceEEe-CC---------------------CchhHHHHHHHHhhcCCCCCCCC--CCCCCCCcccccc
Q 041054 172 DTELCCICFEQVCTIEVQ-DC---------------------GHQMCAQCTLALCCHNKPNPTTA--CLTPPVCPFCRST 227 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~-~C---------------------GH~~C~~C~~~l~~~~~~~~~~~--~~~~~~Cp~cr~~ 227 (298)
+.+.|.-|+...+++... .| .-+=|..|+-++-+.-.-+.... -.....||.||+.
T Consensus 270 e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~ 349 (358)
T PF10272_consen 270 ELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAK 349 (358)
T ss_pred ccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccc
Confidence 457788887776665433 22 22339999977755543222223 5667889999987
Q ss_pred ccee
Q 041054 228 IAHL 231 (298)
Q Consensus 228 I~~~ 231 (298)
.--+
T Consensus 350 FCil 353 (358)
T PF10272_consen 350 FCIL 353 (358)
T ss_pred ceee
Confidence 5443
No 207
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=60.67 E-value=2.8 Score=38.25 Aligned_cols=44 Identities=20% Similarity=0.409 Sum_probs=0.0
Q ss_pred cceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 184 CTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 184 ~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
++..+.||||..=......+ +.... |.....-+.+||||-..+.
T Consensus 358 pthaF~PCGHv~SekTa~yW-s~i~l-PhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 358 PTHAFNPCGHVCSEKTAKYW-SQIPL-PHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp ----------------------------------------------
T ss_pred Cceeecccccccchhhhhhh-hcCCC-CCCcccccccCCcccCccc
Confidence 45678889998744444333 33321 1122466789999998776
No 208
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.92 E-value=4.9 Score=30.83 Aligned_cols=55 Identities=25% Similarity=0.576 Sum_probs=35.1
Q ss_pred CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCcccccccce
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRSTIAH 230 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I~~ 230 (298)
+...|.||... .....|||. |..|-+++|+......+.. --..|+|-.|+....-
T Consensus 64 ddatC~IC~KT---KFADG~GH~-C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~i 119 (169)
T KOG3799|consen 64 DDATCGICHKT---KFADGCGHN-CSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEI 119 (169)
T ss_pred cCcchhhhhhc---ccccccCcc-cchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHH
Confidence 35689999865 334558885 5666677776654333332 3556899999966543
No 209
>PLN02436 cellulose synthase A
Probab=59.61 E-value=5.6 Score=41.17 Aligned_cols=51 Identities=18% Similarity=0.546 Sum_probs=37.7
Q ss_pred CCcccccccccc-------cceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054 172 DTELCCICFEQV-------CTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV 232 (298)
Q Consensus 172 ~~~~C~IC~~~~-------~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~ 232 (298)
....|.||-|.. .-+.+-.||-.+|..|...-....+ ..||.|++.-.+..
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~----------~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGN----------QACPQCKTRYKRIK 92 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCC----------ccCcccCCchhhcc
Confidence 356999999985 2366667999999999954433333 89999998877544
No 210
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.33 E-value=6.6 Score=38.65 Aligned_cols=55 Identities=25% Similarity=0.528 Sum_probs=40.2
Q ss_pred ccccccccccceEEeCCCc-hhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEE
Q 041054 175 LCCICFEQVCTIEVQDCGH-QMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVV 234 (298)
Q Consensus 175 ~C~IC~~~~~~~~~~~CGH-~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~ 234 (298)
.|.||....--+....||| ..|+.|.+++-.-.. ..--...||+||..+......
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~-----~~~~~~~~~vcr~~~~~~s~~ 57 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELN-----NRKCSNECPVCRREVETKSNG 57 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcc-----cccccccCcccccceeeeccc
Confidence 4899999988888899999 569999988833222 122356789999877665554
No 211
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=58.71 E-value=4 Score=35.94 Aligned_cols=42 Identities=21% Similarity=0.654 Sum_probs=27.4
Q ss_pred ccccccccccc-eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 175 LCCICFEQVCT-IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 175 ~C~IC~~~~~~-~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
.|--|--.... -...||.|.||..|+..- . -+.||.|-..|.
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~---~----------dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARSD---S----------DKICPLCDDRVQ 134 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhcC---c----------cccCcCcccHHH
Confidence 34444333332 256789999999999443 2 267999986665
No 212
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.41 E-value=28 Score=32.25 Aligned_cols=32 Identities=34% Similarity=0.790 Sum_probs=23.1
Q ss_pred CCcccccccccccc----eEEeCCCchhHHHHHHHH
Q 041054 172 DTELCCICFEQVCT----IEVQDCGHQMCAQCTLAL 203 (298)
Q Consensus 172 ~~~~C~IC~~~~~~----~~~~~CGH~~C~~C~~~l 203 (298)
....|.||+..... .....|+|.+|.+|....
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ 180 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQH 180 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHH
Confidence 35789999933222 235669999999999765
No 213
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.42 E-value=7.2 Score=35.66 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=33.5
Q ss_pred Ccccccccccccc---eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccc
Q 041054 173 TELCCICFEQVCT---IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRST 227 (298)
Q Consensus 173 ~~~C~IC~~~~~~---~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~ 227 (298)
.-.|.|-.++..+ +-...|||..|.+-+-++...+ .+..+||+|=..
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng--------~~sfKCPYCP~e 383 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNG--------SQSFKCPYCPVE 383 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCC--------CeeeeCCCCCcc
Confidence 3577777776443 5667799999999998883333 235899999643
No 214
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=57.34 E-value=3.9 Score=25.41 Aligned_cols=27 Identities=22% Similarity=0.698 Sum_probs=18.5
Q ss_pred CchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 192 GHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 192 GH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
-|..|..|+-.+ -.....||+|..++-
T Consensus 20 dHYLCl~CLt~m-----------l~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 20 DHYLCLNCLTLM-----------LSRSDRCPICGKPLP 46 (50)
T ss_dssp S-EEEHHHHHHT------------SSSSEETTTTEE--
T ss_pred chhHHHHHHHHH-----------hccccCCCcccCcCc
Confidence 488899999887 334478999987653
No 215
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=57.11 E-value=5.1 Score=35.20 Aligned_cols=55 Identities=24% Similarity=0.458 Sum_probs=32.3
Q ss_pred ccccccccccceEEeCCCchhHHHHHHHHhhc--------C-CCCC---CCCCCCCCCCcccccccc
Q 041054 175 LCCICFEQVCTIEVQDCGHQMCAQCTLALCCH--------N-KPNP---TTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 175 ~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~--------~-~~~~---~~~~~~~~~Cp~cr~~I~ 229 (298)
.|.+|+.....+...+|-|.+-..|+.+.-.+ . +... .+..+....||+||..|.
T Consensus 120 ICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 120 ICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred EEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 44555555556789999999955665332111 0 0000 112455567999998876
No 216
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=56.26 E-value=8.2 Score=29.86 Aligned_cols=31 Identities=29% Similarity=0.647 Sum_probs=23.6
Q ss_pred Ccccccccccccc---eEEeCCC------chhHHHHHHHH
Q 041054 173 TELCCICFEQVCT---IEVQDCG------HQMCAQCTLAL 203 (298)
Q Consensus 173 ~~~C~IC~~~~~~---~~~~~CG------H~~C~~C~~~l 203 (298)
...|.||++.... ++...|| |++|.+|..++
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRW 65 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHH
Confidence 4579999998665 5555555 67799999877
No 217
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=55.78 E-value=11 Score=24.53 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=25.7
Q ss_pred CCcccccccccccceEE-eCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcc
Q 041054 172 DTELCCICFEQVCTIEV-QDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPF 223 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~-~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~ 223 (298)
-...|.|.+....+.+. ..|||.+....++.+-. ......||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~---------~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQ---------RNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCT---------TTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHH---------hcCCCCCCC
Confidence 45678888888777655 58999999999988831 233477887
No 218
>PLN02189 cellulose synthase
Probab=52.79 E-value=9.6 Score=39.44 Aligned_cols=51 Identities=24% Similarity=0.625 Sum_probs=37.4
Q ss_pred CCccccccccccc-------ceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054 172 DTELCCICFEQVC-------TIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV 232 (298)
Q Consensus 172 ~~~~C~IC~~~~~-------~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~ 232 (298)
....|.||-|..- -+.+..||-.+|..|...-...++ ..||.|++.-.+..
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~----------q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGT----------QNCPQCKTRYKRLK 90 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCC----------ccCcccCCchhhcc
Confidence 3568999998843 256666999999999955433343 89999998877544
No 219
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.96 E-value=13 Score=25.25 Aligned_cols=28 Identities=21% Similarity=0.522 Sum_probs=20.8
Q ss_pred CchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054 192 GHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV 232 (298)
Q Consensus 192 GH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~ 232 (298)
.|.||..|.... ++-.||.|...++.--
T Consensus 28 EcTFCadCae~~-------------l~g~CPnCGGelv~RP 55 (84)
T COG3813 28 ECTFCADCAENR-------------LHGLCPNCGGELVARP 55 (84)
T ss_pred eeehhHhHHHHh-------------hcCcCCCCCchhhcCc
Confidence 367899999533 5688999998776543
No 220
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.15 E-value=13 Score=32.36 Aligned_cols=58 Identities=21% Similarity=0.527 Sum_probs=38.1
Q ss_pred CCCcccccccccccceEEeCC----CchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccc
Q 041054 171 SDTELCCICFEQVCTIEVQDC----GHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228 (298)
Q Consensus 171 ~~~~~C~IC~~~~~~~~~~~C----GH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I 228 (298)
.....|.+|.++.-+.-|..| .|.||..|....-.........-.|-..+||+-...|
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdkCPLvgS~v 327 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDKCPLVGSNV 327 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCCCCcCcccCCcc
Confidence 344778999999888777776 7999999986653333221111156667777655443
No 221
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=45.21 E-value=10 Score=27.68 Aligned_cols=29 Identities=24% Similarity=0.630 Sum_probs=22.6
Q ss_pred CCccccccccccc--ceEEeCCCchhHHHHH
Q 041054 172 DTELCCICFEQVC--TIEVQDCGHQMCAQCT 200 (298)
Q Consensus 172 ~~~~C~IC~~~~~--~~~~~~CGH~~C~~C~ 200 (298)
+...|.+|..... ...+.||||.+...|.
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~ 107 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCI 107 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEecccc
Confidence 3567999988755 4788899999877775
No 222
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=44.96 E-value=23 Score=31.46 Aligned_cols=47 Identities=11% Similarity=-0.024 Sum_probs=36.5
Q ss_pred CcccccccccccceEEeCCCchh-HHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054 173 TELCCICFEQVCTIEVQDCGHQM-CAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV 232 (298)
Q Consensus 173 ~~~C~IC~~~~~~~~~~~CGH~~-C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~ 232 (298)
...|..|-.........+|||-+ |..|+-. .. .+.||.|....-.++
T Consensus 343 ~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~---s~----------~~~~~~c~~~~~~~~ 390 (394)
T KOG2113|consen 343 SLKGTSAGFGLLSTIWSGGNMNLSPGSLASA---SA----------SPTSSTCDHNDHTLV 390 (394)
T ss_pred hcccccccCceeeeEeecCCcccChhhhhhc---cc----------CCccccccccceeee
Confidence 36799999999999999999998 9999841 22 267999987654443
No 223
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=44.40 E-value=8.9 Score=34.38 Aligned_cols=52 Identities=25% Similarity=0.407 Sum_probs=30.7
Q ss_pred CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCC----------CCCCCCCCccccc
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTT----------ACLTPPVCPFCRS 226 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~----------~~~~~~~Cp~cr~ 226 (298)
..+.|.+|-++..-.- =|-.-|.+|--.+-.....+... .....++||+||=
T Consensus 14 l~ElCPVCGDkVSGYH---YGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRF 75 (475)
T KOG4218|consen 14 LGELCPVCGDKVSGYH---YGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRF 75 (475)
T ss_pred cccccccccCccccce---eeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhH
Confidence 4689999999854321 13334888864443332222111 1467789999993
No 224
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=43.58 E-value=2.5 Score=26.54 Aligned_cols=44 Identities=23% Similarity=0.407 Sum_probs=27.3
Q ss_pred cccccccccccceEE---eCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054 174 ELCCICFEQVCTIEV---QDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL 231 (298)
Q Consensus 174 ~~C~IC~~~~~~~~~---~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~ 231 (298)
-.|-.|.+..+.... .-||.+.|..|... ....|..|..-|.-.
T Consensus 8 y~CDLCn~~~p~~~LRQCvlCGRWaC~sCW~d--------------eYY~CksC~Gii~lh 54 (57)
T PF14445_consen 8 YSCDLCNSSHPISELRQCVLCGRWACNSCWQD--------------EYYTCKSCNGIINLH 54 (57)
T ss_pred HhHHhhcccCcHHHHHHHhhhchhhhhhhhhh--------------hHhHHHhhhchhhhh
Confidence 346666666554332 33899999999732 246788777655433
No 225
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=43.15 E-value=28 Score=36.34 Aligned_cols=51 Identities=20% Similarity=0.480 Sum_probs=37.8
Q ss_pred CCccccccccccc-------ceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054 172 DTELCCICFEQVC-------TIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV 232 (298)
Q Consensus 172 ~~~~C~IC~~~~~-------~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~ 232 (298)
....|.||-|..- -+.+..||--+|..|...=...+ ...||.|++.-.+..
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG----------~q~CPqCktrYkr~k 73 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDG----------NQSCPQCKTKYKRHK 73 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcC----------CccCCccCCchhhhc
Confidence 3569999998843 36677799999999984443333 389999998877554
No 226
>PHA03096 p28-like protein; Provisional
Probab=42.21 E-value=8.3 Score=34.06 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=31.3
Q ss_pred cccccccccccc--------eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccc
Q 041054 174 ELCCICFEQVCT--------IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228 (298)
Q Consensus 174 ~~C~IC~~~~~~--------~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I 228 (298)
..|.||++..-. -....|-|.+|..|...+-... ..+.+-+-||.|+..+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~-----~~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTES-----LYKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhh-----hhcccCccccchhhHH
Confidence 468999987543 2344599999999997653321 1244445566665444
No 227
>PLN02400 cellulose synthase
Probab=42.19 E-value=14 Score=38.57 Aligned_cols=51 Identities=20% Similarity=0.508 Sum_probs=37.2
Q ss_pred CCccccccccccc-------ceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054 172 DTELCCICFEQVC-------TIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV 232 (298)
Q Consensus 172 ~~~~C~IC~~~~~-------~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~ 232 (298)
....|.||-|..- -+.+..|+--+|..|...=. ......||.|++.-.+..
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYER----------keGnq~CPQCkTrYkR~K 92 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYER----------KDGTQCCPQCKTRYRRHK 92 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheec----------ccCCccCcccCCcccccc
Confidence 3569999999843 36677799999999983332 333489999998887654
No 228
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=42.05 E-value=23 Score=29.49 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=33.7
Q ss_pred CChHHHHHHHcCCHHHHH-HHHHcCCC----CcccccCCCcHHHHHHhcC
Q 041054 50 GSTPLHLAARGGSIDCIR-ELLAWGAD----RLHRDVSGRIPYAVALKHK 94 (298)
Q Consensus 50 g~TpLh~A~~~g~~~~v~-~Ll~~gad----~~~~d~~g~tpL~~A~~~~ 94 (298)
-..|||-|+.-+..+++- ++++..+. +|..|.+|..+|.+|..+.
T Consensus 222 Te~~LHk~iki~REDVl~LYfie~dakiP~~LNd~D~nG~~ALdiAL~~~ 271 (280)
T KOG4591|consen 222 TENPLHKAIKIEREDVLFLYFIEMDAKIPGILNDADHNGALALDIALCRE 271 (280)
T ss_pred CcchhHHhhhccccceeeehhhhccccccccccccCCCchHHHHHHHHHH
Confidence 456999999988888764 56666544 4667888999999887654
No 229
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=41.98 E-value=41 Score=26.83 Aligned_cols=47 Identities=15% Similarity=0.387 Sum_probs=29.6
Q ss_pred CCcccccccccccceEEeCCCc-----hhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccc
Q 041054 172 DTELCCICFEQVCTIEVQDCGH-----QMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH-----~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I 228 (298)
....|.||.+... ....||.= ++=.+|+..+.... ....|+.|+.+.
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s---------~~~~CeiC~~~Y 58 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTS---------KNKSCKICNGPY 58 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcC---------CCCcccccCCeE
Confidence 3568999998864 45567643 22455665553333 347899999665
No 230
>PLN02195 cellulose synthase A
Probab=41.80 E-value=22 Score=36.67 Aligned_cols=48 Identities=21% Similarity=0.512 Sum_probs=35.6
Q ss_pred CCcccccccccc-------cceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 172 DTELCCICFEQV-------CTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 172 ~~~~C~IC~~~~-------~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
....|.||-+.. ..+.+..||--+|..|...=-.. ....||.|++.-.
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~e----------g~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKE----------GRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhc----------CCccCCccCCccc
Confidence 456899999853 33677779999999998444333 3489999997776
No 231
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=41.12 E-value=17 Score=30.74 Aligned_cols=39 Identities=23% Similarity=0.069 Sum_probs=23.9
Q ss_pred HhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Q 041054 33 LDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGAD 75 (298)
Q Consensus 33 l~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad 75 (298)
++.|+.-|..+. ...|+=-+|...++.+..+.|++.|+.
T Consensus 2 le~ga~wn~id~----~n~t~gd~a~ern~~rly~~lv~~gv~ 40 (271)
T KOG1709|consen 2 LEYGAGWNFIDY----ENKTVGDLALERNQSRLYRRLVEAGVP 40 (271)
T ss_pred cccCCCccccCh----hhCCchHHHHHccHHHHHHHHHHcCCc
Confidence 455665555555 556666666666666666666666653
No 232
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=40.77 E-value=21 Score=23.43 Aligned_cols=24 Identities=25% Similarity=0.560 Sum_probs=15.4
Q ss_pred CCCCCCCCCCCCCCCcccccccce
Q 041054 207 NKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 207 ~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
+|-..-+.....+.||+|.++.++
T Consensus 28 gWmR~nFs~~~~p~CPlC~s~M~~ 51 (59)
T PF14169_consen 28 GWMRDNFSFEEEPVCPLCKSPMVS 51 (59)
T ss_pred cccccccccCCCccCCCcCCcccc
Confidence 333333445566899999977653
No 233
>PHA02862 5L protein; Provisional
Probab=40.23 E-value=35 Score=26.76 Aligned_cols=46 Identities=17% Similarity=0.450 Sum_probs=30.0
Q ss_pred cccccccccccceEEeCCCc-----hhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 174 ELCCICFEQVCTIEVQDCGH-----QMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 174 ~~C~IC~~~~~~~~~~~CGH-----~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
..|.||.+..- ....||.= ++-..|+.++-.++ ....|+.|+.+..
T Consensus 3 diCWIC~~~~~-e~~~PC~C~GS~K~VHq~CL~~WIn~S---------~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCD-ERNNFCGCNEEYKVVHIKCMQLWINYS---------KKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCC-CCcccccccCcchhHHHHHHHHHHhcC---------CCcCccCCCCeEE
Confidence 57999998753 33577653 22566776654333 3489999997663
No 234
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=38.87 E-value=5.4 Score=37.84 Aligned_cols=89 Identities=15% Similarity=0.015 Sum_probs=60.0
Q ss_pred CCCcHHHHHHHcCChHHHHHHHhCC-CCccccCCCCCCCCChHHHHHHH---cCCHHHHHHHHHcCCCCcccccCCCcH-
Q 041054 12 RGATPLHLAARQRRPECVHILLDSG-ALVCASTGGYGCPGSTPLHLAAR---GGSIDCIRELLAWGADRLHRDVSGRIP- 86 (298)
Q Consensus 12 ~G~TpLh~Aa~~g~~~~v~~Ll~~g-a~~~~~~~~~~~~g~TpLh~A~~---~g~~~~v~~Ll~~gad~~~~d~~g~tp- 86 (298)
+.+|||+.|+++|..+++.+++..+ .++|-.-. +|.. |.++. .+.++.+..|+.+++..+..|..|.-+
T Consensus 57 ~qR~~~~v~~~~Gs~~~~~~i~~~~~~e~~~~C~----~~~~--~C~~~g~s~~~~e~~~hL~~~k~~~~~tda~g~~~~ 130 (528)
T KOG1595|consen 57 NQRRRRPVARRDGSFNYSPDIYCTKYDEVTGICP----DGDE--HCAVLGRSVGDTERTYHLRYYKTLPCVTDARGNCVK 130 (528)
T ss_pred ccccccchhhhcCccccccceeecchhhccccCC----CCcc--cchhcccccCCcceeEeccccccccCccccCCCccc
Confidence 5689999999999999999887654 44544443 3444 44444 466778888888899888888877755
Q ss_pred --HHHHHhcC---cHHHHHHhccCC
Q 041054 87 --YAVALKHK---HGACAALLNPAS 106 (298)
Q Consensus 87 --L~~A~~~~---~~~~~~~Ll~~g 106 (298)
||.|...+ ...+++.|++.+
T Consensus 131 ~v~~~~~~~~~~~~r~~~~~l~e~~ 155 (528)
T KOG1595|consen 131 NVLHCAFAHGPNDLRPPVEDLLELQ 155 (528)
T ss_pred CcccccccCCccccccHHHHHHhcc
Confidence 44444433 334556665554
No 235
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=38.11 E-value=29 Score=36.16 Aligned_cols=51 Identities=22% Similarity=0.541 Sum_probs=37.5
Q ss_pred CCccccccccccc-------ceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054 172 DTELCCICFEQVC-------TIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV 232 (298)
Q Consensus 172 ~~~~C~IC~~~~~-------~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~ 232 (298)
....|.||-|..- -+.+..|+--+|..|...=... ....||.|++.-.+..
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~----------g~~~cp~c~t~y~~~~ 71 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSE----------GNQCCPQCNTRYKRHK 71 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhc----------CCccCCccCCchhhhc
Confidence 4678999998843 3666779999999998443333 3489999998887554
No 236
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.65 E-value=16 Score=35.64 Aligned_cols=31 Identities=32% Similarity=0.767 Sum_probs=22.2
Q ss_pred Cccccccccccc----ceEEeCCCchhHHHHHHHH
Q 041054 173 TELCCICFEQVC----TIEVQDCGHQMCAQCTLAL 203 (298)
Q Consensus 173 ~~~C~IC~~~~~----~~~~~~CGH~~C~~C~~~l 203 (298)
...|-||+.... ..+..-|||..|..|+..+
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l 45 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL 45 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhH
Confidence 356778854433 3556669999999999766
No 237
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=36.88 E-value=56 Score=22.84 Aligned_cols=35 Identities=26% Similarity=0.502 Sum_probs=25.2
Q ss_pred ccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccc
Q 041054 183 VCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228 (298)
Q Consensus 183 ~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I 228 (298)
.|.++---|-|.|=..|+.+.-.. .-.||.+|++-
T Consensus 46 eC~v~wG~CnHaFH~HCI~rWL~T-----------k~~CPld~q~w 80 (88)
T COG5194 46 ECPVVWGVCNHAFHDHCIYRWLDT-----------KGVCPLDRQTW 80 (88)
T ss_pred cceEEEEecchHHHHHHHHHHHhh-----------CCCCCCCCcee
Confidence 344555569999999998776332 36899999764
No 238
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=35.52 E-value=30 Score=31.00 Aligned_cols=47 Identities=26% Similarity=0.639 Sum_probs=34.3
Q ss_pred Ccccccccccc----cceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 173 TELCCICFEQV----CTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 173 ~~~C~IC~~~~----~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
...|.+|.+.. ......+||+..|..|+... ...+..||.||.+..+
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~-----------~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTI-----------SDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcc-----------cccCCCCCccCCcccc
Confidence 46788988743 34566679999999999888 4444789999944433
No 239
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=35.01 E-value=26 Score=22.62 Aligned_cols=24 Identities=29% Similarity=0.819 Sum_probs=18.3
Q ss_pred hhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 194 QMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 194 ~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
.||..|...+ ++..||.|...+++
T Consensus 30 TFC~~C~e~~-------------l~~~CPNCgGelv~ 53 (57)
T PF06906_consen 30 TFCADCAETM-------------LNGVCPNCGGELVR 53 (57)
T ss_pred cccHHHHHHH-------------hcCcCcCCCCcccc
Confidence 4699999665 46789999977654
No 240
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.65 E-value=33 Score=32.39 Aligned_cols=65 Identities=23% Similarity=0.424 Sum_probs=41.0
Q ss_pred CCCcccccccccccc-eEEeCCCchhHHHHHHHH-hhcCCCCCCCCCCCCCCCc--ccccccceeEEEEeecC
Q 041054 171 SDTELCCICFEQVCT-IEVQDCGHQMCAQCTLAL-CCHNKPNPTTACLTPPVCP--FCRSTIAHLVVVKIENQ 239 (298)
Q Consensus 171 ~~~~~C~IC~~~~~~-~~~~~CGH~~C~~C~~~l-~~~~~~~~~~~~~~~~~Cp--~cr~~I~~~~~~~~~~~ 239 (298)
.....|-||++.... +....|||.+|..|.... .....-++. .. ..|| -|...+....+..+...
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~---~~-i~cp~~~C~a~v~~~~i~~~~s~ 136 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEE---AK-IKCPAHGCPALVGEDTVEKLVSD 136 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeecccc---cc-ccCCCCCccccCCCceeeeecCC
Confidence 346789999998874 888899999999998653 111111111 11 3454 67776666655555444
No 241
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.40 E-value=35 Score=31.53 Aligned_cols=49 Identities=31% Similarity=0.632 Sum_probs=33.5
Q ss_pred Ccccccccccccc-----eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 173 TELCCICFEQVCT-----IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 173 ~~~C~IC~~~~~~-----~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
...|.||++.-.. ++...|||.|=.+|...+- +.. ....||.|...-..
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl-~k~--------~~~~cp~c~~katk 57 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWL-GKK--------TKMQCPLCSGKATK 57 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHH-hhh--------hhhhCcccCChhHH
Confidence 4679999987432 5666799999888876553 211 22689999866543
No 242
>COG4855 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.34 E-value=16 Score=24.51 Aligned_cols=58 Identities=21% Similarity=0.342 Sum_probs=37.4
Q ss_pred CCcccccccccccce----EEeCCCchhHHHHHHHHhhcCC----CCCCC---CCCCCCCCcccccccc
Q 041054 172 DTELCCICFEQVCTI----EVQDCGHQMCAQCTLALCCHNK----PNPTT---ACLTPPVCPFCRSTIA 229 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~----~~~~CGH~~C~~C~~~l~~~~~----~~~~~---~~~~~~~Cp~cr~~I~ 229 (298)
.-..|.+|.++..+. ...-||-..|..=+.+-=--.| |-|.. ++.....|+.|+..|.
T Consensus 6 ~~mKCY~C~eeGKDtdAV~iCIVCG~GlC~EHli~eE~p~w~G~YP~p~k~~K~~lpRilC~~C~~a~~ 74 (76)
T COG4855 6 NMMKCYDCAEEGKDTDAVGICIVCGMGLCMEHLIREETPMWGGGYPFPAKKLKKTLPRILCVECHEAIK 74 (76)
T ss_pred hhhHHHHHHHhCCCcccEEEEEEeCchHHHHHHHhhhcccccCCCCCcchhhhccCCceeeHHHHHHhh
Confidence 345678888776653 3445999999988866433333 22222 2677788999987654
No 243
>KOG3836 consensus HLH transcription factor EBF/Olf-1 and related DNA binding proteins [Transcription]
Probab=32.24 E-value=12 Score=36.21 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=17.2
Q ss_pred HHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHh
Q 041054 65 CIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102 (298)
Q Consensus 65 ~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~L 102 (298)
.+-.|++.++.++..|..+.+|+|++...|..++.+.+
T Consensus 411 ~v~~lik~~~~~~~~d~f~~~p~~~~~~sgdp~~~~~~ 448 (605)
T KOG3836|consen 411 LVFTLIKKGAHPNDDDKFGFTPLHIPQISGDPRIIQLL 448 (605)
T ss_pred ceeeeecccCccchhcccccccccccCCCCCHHHhhhh
Confidence 33334444444444444444444444444444444443
No 244
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.68 E-value=83 Score=31.03 Aligned_cols=83 Identities=22% Similarity=0.400 Sum_probs=48.7
Q ss_pred HHHHhcCCCCCCCCCCCCCC-CCcccccccCCCcccccccccccce----EEeCCCchhHHHHHHHHhhcCCCCCCCC--
Q 041054 142 EKNILKGTAYSLPSPSHSDV-GADDNISEASDTELCCICFEQVCTI----EVQDCGHQMCAQCTLALCCHNKPNPTTA-- 214 (298)
Q Consensus 142 ~~~ll~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~C~IC~~~~~~~----~~~~CGH~~C~~C~~~l~~~~~~~~~~~-- 214 (298)
...+++++.+.++.....+. -..+..+.-.+.+.|..|...+... -...||-.||.+|...-+. -|..+
T Consensus 133 t~~~lk~~g~~Fpe~~e~d~mf~~~~~pdW~D~~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~----lP~~Gi~ 208 (634)
T KOG1818|consen 133 TYQKLKGGGHVFPELDENDAMFDAETAPDWIDSEECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLT----LPKLGIE 208 (634)
T ss_pred HHHHHhcCCccccccccchhhhcccCCcccccccccceeeeeeeeccccccccccchhhccCccccccC----ccccccc
Confidence 33456677777766655442 1112334455667898888776543 3445999999999854422 23333
Q ss_pred CCCCCCCcccccccc
Q 041054 215 CLTPPVCPFCRSTIA 229 (298)
Q Consensus 215 ~~~~~~Cp~cr~~I~ 229 (298)
.+. ..|-.|....+
T Consensus 209 ~~V-RVCd~C~E~l~ 222 (634)
T KOG1818|consen 209 KPV-RVCDSCYELLT 222 (634)
T ss_pred ccc-eehhhhHHHhh
Confidence 333 67888854443
No 245
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.31 E-value=14 Score=35.62 Aligned_cols=42 Identities=29% Similarity=0.673 Sum_probs=26.4
Q ss_pred eEEeCCCchh-HHHHHHHHhhcCCCCCC------CCCCCCCCCcccccc
Q 041054 186 IEVQDCGHQM-CAQCTLALCCHNKPNPT------TACLTPPVCPFCRST 227 (298)
Q Consensus 186 ~~~~~CGH~~-C~~C~~~l~~~~~~~~~------~~~~~~~~Cp~cr~~ 227 (298)
+.+..|||.. |..|-..|--|...+.- ...+.++.||.|...
T Consensus 214 ~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 214 LLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSE 262 (505)
T ss_pred eEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCC
Confidence 4556688888 88887666444322111 114667899999864
No 246
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=29.56 E-value=17 Score=23.13 Aligned_cols=11 Identities=27% Similarity=1.041 Sum_probs=5.7
Q ss_pred CCcccccccce
Q 041054 220 VCPFCRSTIAH 230 (298)
Q Consensus 220 ~Cp~cr~~I~~ 230 (298)
.||+|.+++..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 89999988753
No 247
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.65 E-value=43 Score=28.93 Aligned_cols=55 Identities=22% Similarity=0.408 Sum_probs=34.9
Q ss_pred CCcccccccccccc----eEEeCCC-----chhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 172 DTELCCICFEQVCT----IEVQDCG-----HQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 172 ~~~~C~IC~~~~~~----~~~~~CG-----H~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
.+-.|.||+....+ ..+.||. ||+-.+|+ ..|-+.+-. ........||.|+++-.
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL-~rWiDEK~~--~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCL-SRWIDEKQR--GNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHH-HHHHhHHhc--CCCCceeechhhcchhe
Confidence 45678999976554 3566764 55566666 444444322 22677889999997654
No 248
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=28.10 E-value=3.9 Score=30.97 Aligned_cols=44 Identities=20% Similarity=0.481 Sum_probs=29.8
Q ss_pred Ccccccccccc-----cceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccc
Q 041054 173 TELCCICFEQV-----CTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRS 226 (298)
Q Consensus 173 ~~~C~IC~~~~-----~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~ 226 (298)
...|.+|.... ......+|+|.+|..|.... .....|.|.+|+.
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~----------~~~~~WlC~vC~k 102 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYS----------KKEPIWLCKVCQK 102 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEET----------SSSCCEEEHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCcC----------CCCCCEEChhhHH
Confidence 45799997753 23567789999999988541 1344588999985
No 249
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=27.94 E-value=27 Score=27.12 Aligned_cols=19 Identities=32% Similarity=0.702 Sum_probs=16.0
Q ss_pred CCCCcccccccceeEEEEe
Q 041054 218 PPVCPFCRSTIAHLVVVKI 236 (298)
Q Consensus 218 ~~~Cp~cr~~I~~~~~~~~ 236 (298)
...||.||+.|..+.+...
T Consensus 9 ei~CPhCRQ~ipALtLTDt 27 (163)
T TIGR02652 9 EIRCPHCRQNIPALTLTDT 27 (163)
T ss_pred cCcCchhhcccchheecce
Confidence 4689999999999988743
No 250
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=27.49 E-value=26 Score=22.24 Aligned_cols=16 Identities=31% Similarity=0.864 Sum_probs=8.6
Q ss_pred CCCCCCCcccccccce
Q 041054 215 CLTPPVCPFCRSTIAH 230 (298)
Q Consensus 215 ~~~~~~Cp~cr~~I~~ 230 (298)
+..+..||.|...|..
T Consensus 21 S~~PatCP~C~a~~~~ 36 (54)
T PF09237_consen 21 SEQPATCPICGAVIRQ 36 (54)
T ss_dssp TS--EE-TTT--EESS
T ss_pred cCCCCCCCcchhhccc
Confidence 6778899999987753
No 251
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=27.39 E-value=1.6e+02 Score=25.01 Aligned_cols=27 Identities=30% Similarity=0.909 Sum_probs=19.4
Q ss_pred EeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccc
Q 041054 188 VQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCR 225 (298)
Q Consensus 188 ~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr 225 (298)
+.|---..|.+|-..+ |-+. +.||+|+
T Consensus 244 qqpppMK~ClsChqqI--HRNA---------PiCPlCK 270 (286)
T KOG4451|consen 244 QQPPPMKVCLSCHQQI--HRNA---------PICPLCK 270 (286)
T ss_pred cCCCcchHHHHHHHHH--hcCC---------CCCcchh
Confidence 3444455699999888 4443 8899998
No 252
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.06 E-value=60 Score=28.60 Aligned_cols=45 Identities=20% Similarity=0.359 Sum_probs=27.4
Q ss_pred CCchhHHHHHHHHhhcCCCCCCC-C-CCCCCCCcccccccceeEEEE
Q 041054 191 CGHQMCAQCTLALCCHNKPNPTT-A-CLTPPVCPFCRSTIAHLVVVK 235 (298)
Q Consensus 191 CGH~~C~~C~~~l~~~~~~~~~~-~-~~~~~~Cp~cr~~I~~~~~~~ 235 (298)
|.-+-|.+|+..+-..-..+-.. . -.....||.||+..--+-+.-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~~ 371 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVHC 371 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeeeE
Confidence 55555999997764432211111 1 456688999998876555543
No 253
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=27.00 E-value=44 Score=29.74 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=30.6
Q ss_pred ceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccc--ccceeEEE
Q 041054 185 TIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRS--TIAHLVVV 234 (298)
Q Consensus 185 ~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~--~I~~~~~~ 234 (298)
.-+...|||.. +.|.|.......+....||.|+. +++.+-+-
T Consensus 316 P~vYl~CGHV~--------G~H~WG~~e~~g~~~r~CPmC~~~gp~V~L~lG 359 (429)
T KOG3842|consen 316 PWVYLNCGHVH--------GYHNWGVRENTGQRERECPMCRVVGPYVPLWLG 359 (429)
T ss_pred CeEEEeccccc--------cccccccccccCcccCcCCeeeeecceeeeecc
Confidence 45667799974 45888888888899999999994 44444433
No 254
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=26.97 E-value=52 Score=24.18 Aligned_cols=33 Identities=27% Similarity=0.543 Sum_probs=22.9
Q ss_pred cceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccc
Q 041054 184 CTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRST 227 (298)
Q Consensus 184 ~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~ 227 (298)
|++.--.|.|.|=..|+-+. ......||+|.++
T Consensus 74 C~VaWG~CNHaFH~hCisrW-----------lktr~vCPLdn~e 106 (114)
T KOG2930|consen 74 CTVAWGVCNHAFHFHCISRW-----------LKTRNVCPLDNKE 106 (114)
T ss_pred eEEEeeecchHHHHHHHHHH-----------HhhcCcCCCcCcc
Confidence 44555669999977777555 2233789999764
No 255
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.34 E-value=96 Score=26.28 Aligned_cols=52 Identities=19% Similarity=0.385 Sum_probs=35.7
Q ss_pred cccccccccc--ceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 175 LCCICFEQVC--TIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 175 ~C~IC~~~~~--~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
-|..|..... +.....|-|.+-..|+-+..+.- |.+..|....||-|-.+|-
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~l---PanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANL---PANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhC---CCcCCCCcccCCCCCCccC
Confidence 4566654433 34556699999999986665443 3445688899999998874
No 256
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=26.12 E-value=21 Score=22.42 Aligned_cols=45 Identities=20% Similarity=0.504 Sum_probs=16.5
Q ss_pred cccccccccc-eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccc
Q 041054 176 CCICFEQVCT-IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRST 227 (298)
Q Consensus 176 C~IC~~~~~~-~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~ 227 (298)
|.+....... +.-..|.|..|.+-...+-... ....|.||.|.++
T Consensus 5 CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~-------~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 5 CPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQ-------RTPKWKCPICNKP 50 (50)
T ss_dssp -TTTSSB-SSEEEETT--SS--EEHHHHHHHHH-------HS---B-TTT---
T ss_pred CCCCCCEEEeCccCCcCcccceECHHHHHHHhh-------ccCCeECcCCcCc
Confidence 4444444333 4556699998766643331111 1122999999863
No 257
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=25.95 E-value=31 Score=26.76 Aligned_cols=19 Identities=37% Similarity=0.746 Sum_probs=15.9
Q ss_pred CCCCcccccccceeEEEEe
Q 041054 218 PPVCPFCRSTIAHLVVVKI 236 (298)
Q Consensus 218 ~~~Cp~cr~~I~~~~~~~~ 236 (298)
...||.||+.|..+.+...
T Consensus 6 ei~CPhCRq~ipALtLTDt 24 (161)
T PF09654_consen 6 EIQCPHCRQTIPALTLTDT 24 (161)
T ss_pred cCcCchhhcccchheecce
Confidence 3689999999999988743
No 258
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=25.75 E-value=3.4 Score=28.06 Aligned_cols=43 Identities=28% Similarity=0.624 Sum_probs=22.5
Q ss_pred ccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEE
Q 041054 175 LCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVV 233 (298)
Q Consensus 175 ~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~ 233 (298)
.|..|... +.... ||..|..|...+ .+...||.|+.++..+..
T Consensus 3 ~CP~C~~~---L~~~~-~~~~C~~C~~~~------------~~~a~CPdC~~~Le~LkA 45 (70)
T PF07191_consen 3 TCPKCQQE---LEWQG-GHYHCEACQKDY------------KKEAFCPDCGQPLEVLKA 45 (70)
T ss_dssp B-SSS-SB---EEEET-TEEEETTT--EE------------EEEEE-TTT-SB-EEEEE
T ss_pred cCCCCCCc---cEEeC-CEEECccccccc------------eecccCCCcccHHHHHHH
Confidence 46666555 22222 677788888554 233679999988877654
No 259
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=25.10 E-value=30 Score=24.84 Aligned_cols=38 Identities=26% Similarity=0.682 Sum_probs=28.2
Q ss_pred CcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 173 TELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 173 ~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
...|.+|-..... =||..|-.|+... -.|..|-..|..
T Consensus 44 ~~~C~~CK~~v~q-----~g~~YCq~CAYkk---------------GiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQ-----PGAKYCQTCAYKK---------------GICAMCGKKILD 81 (90)
T ss_pred Ccccccccccccc-----CCCccChhhhccc---------------CcccccCCeecc
Confidence 4579999877321 2778899998666 789999987743
No 260
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=24.99 E-value=52 Score=33.41 Aligned_cols=54 Identities=20% Similarity=0.372 Sum_probs=37.4
Q ss_pred CCcccccccccccc----eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 172 DTELCCICFEQVCT----IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 172 ~~~~C~IC~~~~~~----~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
....|+||.+.... -....|-|.|=..|+..++.. .....+..|.||.|+..-.
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs----~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARS----SEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHH----hhhccCccccCCcccchhc
Confidence 44689999987543 344559999977888777655 1122568899999994433
No 261
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=24.85 E-value=39 Score=18.12 Aligned_cols=10 Identities=30% Similarity=1.002 Sum_probs=8.0
Q ss_pred CCcccccccc
Q 041054 220 VCPFCRSTIA 229 (298)
Q Consensus 220 ~Cp~cr~~I~ 229 (298)
.||.|+..|.
T Consensus 2 ~CP~C~~~V~ 11 (26)
T PF10571_consen 2 TCPECGAEVP 11 (26)
T ss_pred cCCCCcCCch
Confidence 5999998874
No 262
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=24.76 E-value=64 Score=27.44 Aligned_cols=37 Identities=22% Similarity=0.177 Sum_probs=32.2
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCC
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGAL 38 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~ 38 (298)
+|+--|..|....|+=-+|.+.++.+..+.|++.|+.
T Consensus 4 ~ga~wn~id~~n~t~gd~a~ern~~rly~~lv~~gv~ 40 (271)
T KOG1709|consen 4 YGAGWNFIDYENKTVGDLALERNQSRLYRRLVEAGVP 40 (271)
T ss_pred cCCCccccChhhCCchHHHHHccHHHHHHHHHHcCCc
Confidence 5677788888899999999999999999999998874
No 263
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=24.04 E-value=22 Score=35.74 Aligned_cols=43 Identities=28% Similarity=0.587 Sum_probs=29.1
Q ss_pred ceEEeCCCchh-HHHHHHHHhhcCCCCCCC------CCCCCCCCcccccc
Q 041054 185 TIEVQDCGHQM-CAQCTLALCCHNKPNPTT------ACLTPPVCPFCRST 227 (298)
Q Consensus 185 ~~~~~~CGH~~-C~~C~~~l~~~~~~~~~~------~~~~~~~Cp~cr~~ 227 (298)
.+.+..|||.+ |.+|-..+--|...+--. ..+.+..||.|...
T Consensus 435 ~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 435 LLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred eeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 45666699999 999976554444332111 15788999999987
No 264
>PRK11032 hypothetical protein; Provisional
Probab=23.85 E-value=20 Score=28.77 Aligned_cols=27 Identities=22% Similarity=0.581 Sum_probs=16.8
Q ss_pred ceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccc
Q 041054 185 TIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRS 226 (298)
Q Consensus 185 ~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~ 226 (298)
..+...|||..+..- +...+.||.|..
T Consensus 124 ~LvC~~Cg~~~~~~~---------------p~~i~pCp~C~~ 150 (160)
T PRK11032 124 NLVCEKCHHHLAFYT---------------PEVLPLCPKCGH 150 (160)
T ss_pred eEEecCCCCEEEecC---------------CCcCCCCCCCCC
Confidence 345566777765322 344588999984
No 265
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.15 E-value=54 Score=28.19 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=28.2
Q ss_pred CCcccccccccccceEEeCCCchhHHHHHHHH
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLAL 203 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l 203 (298)
.-..|..|+....+.+..+=||.||..|++..
T Consensus 42 ~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ 73 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVITPDGYLFDREAILEY 73 (303)
T ss_pred CcceeeeecccccCCccCCCCeeeeHHHHHHH
Confidence 34678999999999999999999999998776
No 267
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=21.95 E-value=20 Score=32.05 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=23.4
Q ss_pred Cchh-HHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054 192 GHQM-CAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK 235 (298)
Q Consensus 192 GH~~-C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~ 235 (298)
-|+- |..|-..+- ....-.+.|+||.|...|.+=+...
T Consensus 244 Y~~TAC~rC~t~y~------le~A~~~~wrCpkCGg~ikKGV~dR 282 (403)
T COG1379 244 YHLTACSRCYTRYS------LEEAKSLRWRCPKCGGKIKKGVSDR 282 (403)
T ss_pred hhHHHHHHhhhccC------cchhhhhcccCcccccchhhhHHHH
Confidence 3554 999984440 0001345699999999887655543
No 268
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=21.48 E-value=20 Score=28.36 Aligned_cols=10 Identities=40% Similarity=0.979 Sum_probs=7.7
Q ss_pred CCCCCccccc
Q 041054 217 TPPVCPFCRS 226 (298)
Q Consensus 217 ~~~~Cp~cr~ 226 (298)
.-+.||.|..
T Consensus 129 ~l~~Cp~C~~ 138 (146)
T PF07295_consen 129 RLPPCPKCGH 138 (146)
T ss_pred cCCCCCCCCC
Confidence 4588999984
No 269
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=21.08 E-value=29 Score=36.81 Aligned_cols=44 Identities=27% Similarity=0.753 Sum_probs=34.0
Q ss_pred CCCccccccccccc-ceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccc
Q 041054 171 SDTELCCICFEQVC-TIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCR 225 (298)
Q Consensus 171 ~~~~~C~IC~~~~~-~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr 225 (298)
.+...|.||.+-.+ .-...-|||..|..|...+-. .+..||.|.
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~-----------~~s~~~~~k 1195 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLY-----------ASSRCPICK 1195 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHH-----------HhccCcchh
Confidence 34568999999877 456777999999999977733 336788888
No 270
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=20.95 E-value=36 Score=33.72 Aligned_cols=49 Identities=29% Similarity=0.555 Sum_probs=37.8
Q ss_pred CcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 173 TELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 173 ~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
...|-||+...-......|-|.||..|+... ..+ +.....||+|+..+.
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~--f~~------~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKL--FES------KKGPKQCALCKSDIE 69 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhce--eec------cCccccchhhhhhhh
Confidence 4568899998888888899999999998655 333 233688999996665
No 271
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=20.50 E-value=73 Score=22.98 Aligned_cols=35 Identities=26% Similarity=0.636 Sum_probs=27.2
Q ss_pred CcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccc
Q 041054 173 TELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRS 226 (298)
Q Consensus 173 ~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~ 226 (298)
...|..|.+..-... -|..|..|+..+ ..|+.|..
T Consensus 55 p~kC~~C~qktVk~A----Yh~iC~~Ca~~~---------------~vCaKC~k 89 (92)
T PF10217_consen 55 PKKCNKCQQKTVKHA----YHVICDPCAKEL---------------KVCAKCGK 89 (92)
T ss_pred CccccccccchHHHH----HHHHHHHHHHhh---------------ccCcccCC
Confidence 467889988744332 588899999999 88999874
No 272
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=20.40 E-value=73 Score=31.91 Aligned_cols=53 Identities=21% Similarity=0.402 Sum_probs=30.5
Q ss_pred ccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCcccccccc
Q 041054 169 EASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRSTIA 229 (298)
Q Consensus 169 ~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I~ 229 (298)
...+.+.|.||.+..-.+. |..|-..+-++.-..|.+. ...-+.|+.|..++.
T Consensus 43 ~~~~~e~c~ic~~~g~~l~--------c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~ 96 (696)
T KOG0383|consen 43 DDAEQEACRICADGGELLW--------CDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKN 96 (696)
T ss_pred chhhhhhhhhhcCCCcEEE--------eccccHHHHHHccCCCCCcCCccceeeeeeccCCC
Confidence 3456789999999955444 5555555544444444444 222277777744444
No 273
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=20.26 E-value=16 Score=18.92 Aligned_cols=9 Identities=33% Similarity=1.021 Sum_probs=4.8
Q ss_pred CCCcccccc
Q 041054 219 PVCPFCRST 227 (298)
Q Consensus 219 ~~Cp~cr~~ 227 (298)
..||.|..+
T Consensus 14 ~fC~~CG~~ 22 (23)
T PF13240_consen 14 KFCPNCGTP 22 (23)
T ss_pred cchhhhCCc
Confidence 456666544
No 274
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=20.12 E-value=63 Score=18.78 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=11.8
Q ss_pred CCCCCCccccccccee
Q 041054 216 LTPPVCPFCRSTIAHL 231 (298)
Q Consensus 216 ~~~~~Cp~cr~~I~~~ 231 (298)
.....||.|...+.++
T Consensus 24 ~~~~~CP~Cg~~~~r~ 39 (41)
T smart00834 24 DPLATCPECGGDVRRL 39 (41)
T ss_pred CCCCCCCCCCCcceec
Confidence 3457899999876554
Done!