Query 041054
Match_columns 298
No_of_seqs 493 out of 2051
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 04:59:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpm_A Engineered protein OR26 100.0 5.3E-30 1.8E-34 208.5 12.6 134 2-149 26-159 (169)
2 1d9s_A Cyclin-dependent kinase 99.9 6.3E-28 2.1E-32 188.6 7.3 131 3-148 2-133 (136)
3 2y1l_E Darpin-8.4; hydrolase-i 99.9 2.5E-26 8.6E-31 186.0 12.6 133 2-148 36-168 (169)
4 3c5r_A BARD-1, BRCA1-associate 99.9 4E-27 1.4E-31 184.1 6.2 132 3-149 1-132 (137)
5 1oy3_D Transcription factor in 99.9 5.9E-27 2E-31 203.8 7.5 209 6-240 2-252 (282)
6 3v31_A Ankyrin repeat family A 99.9 4.6E-26 1.6E-30 183.7 12.1 132 3-148 26-157 (167)
7 4b93_B Ankyrin repeat domain-c 99.9 2.9E-26 9.9E-31 200.0 11.2 134 2-149 75-208 (269)
8 3f6q_A Integrin-linked protein 99.9 4.4E-26 1.5E-30 186.2 11.1 134 3-150 29-162 (179)
9 3v30_A DNA-binding protein rfx 99.9 4.9E-26 1.7E-30 184.5 11.2 131 5-149 28-158 (172)
10 1ihb_A P18-INK4C(INK6), cyclin 99.9 3.3E-26 1.1E-30 183.4 9.8 134 2-149 27-160 (162)
11 2rfm_A Putative ankyrin repeat 99.9 5.7E-26 1.9E-30 187.5 10.7 131 3-147 58-188 (192)
12 1awc_B Protein (GA binding pro 99.9 8.7E-26 3E-30 179.7 11.1 128 3-145 25-152 (153)
13 3twr_A Tankyrase-2; ankyrin re 99.9 4.9E-26 1.7E-30 183.2 9.1 131 4-149 33-163 (165)
14 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1.3E-25 4.5E-30 178.9 10.5 130 3-148 26-155 (156)
15 2jab_A H10-2-G3; HER2, darpin, 99.9 7.1E-26 2.4E-30 176.9 8.5 126 9-148 10-135 (136)
16 1wdy_A 2-5A-dependent ribonucl 99.9 6.2E-26 2.1E-30 197.1 8.6 143 2-148 27-170 (285)
17 3kea_A K1L; tropism, ANK repea 99.9 2.2E-26 7.6E-31 202.2 5.7 199 5-242 23-224 (285)
18 1k1a_A B-cell lymphoma 3-encod 99.9 7.1E-25 2.4E-29 186.5 13.9 132 6-147 2-137 (241)
19 4gpm_A Engineered protein OR26 99.9 3.4E-25 1.2E-29 180.0 11.1 121 15-149 6-126 (169)
20 1yyh_A HN1;, notch 1, ankyrin 99.9 9.5E-26 3.3E-30 194.4 8.1 196 3-235 46-245 (253)
21 2rfm_A Putative ankyrin repeat 99.9 1.9E-25 6.4E-30 184.4 8.8 130 5-148 27-156 (192)
22 3aji_A 26S proteasome non-ATPa 99.9 2.9E-25 9.8E-30 188.0 9.9 192 4-232 31-224 (231)
23 3d9h_A CDNA FLJ77766, highly s 99.9 1.3E-25 4.6E-30 197.1 8.1 195 4-236 50-245 (285)
24 2f8y_A Notch homolog 1, transl 99.9 3.8E-25 1.3E-29 186.3 9.9 196 3-235 14-213 (223)
25 1n0r_A 4ANK, 4 ankyrin repeats 99.9 5.8E-25 2E-29 168.1 10.0 124 12-149 1-124 (126)
26 2xai_A ASB-9, ankyrin repeat a 99.9 1.4E-24 4.7E-29 188.0 13.6 193 2-235 25-219 (261)
27 3d9h_A CDNA FLJ77766, highly s 99.9 7.9E-25 2.7E-29 192.2 11.7 193 2-235 81-275 (285)
28 1bi7_B P16INK4A, MTS1, multipl 99.9 1.2E-25 4E-30 179.8 5.8 130 5-149 4-134 (156)
29 1n11_A Ankyrin; clathrin, BAND 99.9 1.1E-25 3.7E-30 208.6 6.0 134 2-149 3-136 (437)
30 3jxi_A Vanilloid receptor-rela 99.9 1.3E-25 4.5E-30 193.8 5.9 144 5-151 85-250 (260)
31 4hbd_A KN motif and ankyrin re 99.9 1.2E-24 4E-29 190.4 12.0 135 5-149 103-273 (276)
32 1yyh_A HN1;, notch 1, ankyrin 99.9 9.3E-25 3.2E-29 188.1 10.7 133 2-148 79-212 (253)
33 2xai_A ASB-9, ankyrin repeat a 99.9 1.9E-25 6.4E-30 193.5 6.3 191 12-240 2-193 (261)
34 2rfa_A Transient receptor pote 99.9 1.2E-24 4.2E-29 184.4 11.0 137 3-149 27-181 (232)
35 3utm_A Tankyrase-1; tankyrase, 99.9 5.3E-25 1.8E-29 197.0 9.1 210 2-238 47-305 (351)
36 3b7b_A Euchromatic histone-lys 99.9 3.5E-25 1.2E-29 188.2 7.5 195 4-235 2-199 (237)
37 3t8k_A Uncharacterized protein 99.9 5.9E-26 2E-30 187.4 2.1 129 5-147 29-175 (186)
38 1ikn_D Protein (I-kappa-B-alph 99.9 1.3E-24 4.3E-29 185.1 10.4 130 4-147 36-172 (236)
39 1k1a_A B-cell lymphoma 3-encod 99.9 3.8E-25 1.3E-29 188.1 7.2 197 2-235 35-238 (241)
40 3aaa_C Myotrophin, protein V-1 99.9 4.3E-25 1.5E-29 169.3 6.7 118 9-140 3-120 (123)
41 1n0q_A 3ANK, 3 ankyrin repeats 99.9 4.6E-24 1.6E-28 155.6 11.4 93 12-108 1-93 (93)
42 2f8y_A Notch homolog 1, transl 99.9 3.9E-24 1.3E-28 180.0 12.6 133 2-148 47-180 (223)
43 2etb_A Transient receptor pote 99.9 1.2E-24 4.2E-29 187.4 9.6 140 8-150 85-245 (256)
44 3aji_A 26S proteasome non-ATPa 99.9 3.2E-24 1.1E-28 181.5 11.8 134 2-149 62-195 (231)
45 1oy3_D Transcription factor in 99.9 1.8E-24 6.3E-29 188.0 10.5 90 49-148 157-247 (282)
46 3hra_A Ankyrin repeat family p 99.9 4.6E-24 1.6E-28 176.7 12.0 137 3-153 29-173 (201)
47 2rfa_A Transient receptor pote 99.9 4.4E-24 1.5E-28 180.9 12.0 140 7-150 69-221 (232)
48 1s70_B 130 kDa myosin-binding 99.9 5E-24 1.7E-28 187.3 12.2 132 3-148 63-254 (299)
49 1ikn_D Protein (I-kappa-B-alph 99.9 2.1E-24 7.3E-29 183.6 9.4 135 3-147 68-205 (236)
50 3b7b_A Euchromatic histone-lys 99.9 6.8E-24 2.3E-28 180.2 12.3 188 2-226 33-223 (237)
51 4b93_B Ankyrin repeat domain-c 99.9 5.6E-25 1.9E-29 191.8 5.4 123 2-138 108-230 (269)
52 2dzn_A Probable 26S proteasome 99.9 8.9E-24 3E-28 178.3 12.1 181 6-221 29-216 (228)
53 2fo1_E LIN-12 protein; beta-ba 99.9 2.6E-25 9E-30 202.6 2.8 205 2-235 155-368 (373)
54 3ljn_A Hypothetical protein; a 99.9 9.9E-25 3.4E-29 197.5 6.6 199 3-235 43-266 (364)
55 3hra_A Ankyrin repeat family p 99.9 7.5E-24 2.6E-28 175.5 10.9 121 12-146 4-126 (201)
56 3v31_A Ankyrin repeat family A 99.9 6.9E-24 2.4E-28 170.9 9.4 123 12-148 2-124 (167)
57 2etb_A Transient receptor pote 99.9 3.1E-24 1.1E-28 184.8 7.8 139 3-151 29-207 (256)
58 2dzn_A Probable 26S proteasome 99.9 2.4E-23 8.2E-28 175.7 13.1 135 4-152 62-202 (228)
59 3ehr_A Osteoclast-stimulating 99.9 6.9E-25 2.4E-29 185.2 3.1 132 6-151 66-198 (222)
60 2fo1_E LIN-12 protein; beta-ba 99.9 9.8E-25 3.3E-29 198.8 4.1 206 3-237 114-337 (373)
61 2pnn_A Transient receptor pote 99.9 5.2E-24 1.8E-28 185.3 8.4 139 9-150 97-257 (273)
62 3ljn_A Hypothetical protein; a 99.9 4.7E-24 1.6E-28 193.1 7.9 130 6-149 131-267 (364)
63 4g8k_A 2-5A-dependent ribonucl 99.9 2.1E-24 7.3E-29 193.3 5.5 223 11-236 23-296 (337)
64 2vge_A RELA-associated inhibit 99.9 3.9E-24 1.3E-28 182.1 6.7 132 6-151 14-149 (229)
65 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.7E-23 5.7E-28 169.3 9.8 127 9-149 10-136 (169)
66 1bi7_B P16INK4A, MTS1, multipl 99.9 1.2E-23 4.1E-28 168.0 8.5 117 2-133 34-151 (156)
67 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3.2E-24 1.1E-28 183.5 5.3 132 2-148 27-161 (239)
68 1s70_B 130 kDa myosin-binding 99.9 3.4E-23 1.2E-27 181.9 11.8 193 10-229 37-281 (299)
69 3kea_A K1L; tropism, ANK repea 99.9 2.7E-23 9.2E-28 182.5 11.1 189 2-235 53-243 (285)
70 1sw6_A Regulatory protein SWI6 99.9 6.8E-24 2.3E-28 189.9 7.2 146 2-151 119-309 (327)
71 2pnn_A Transient receptor pote 99.9 1.9E-23 6.6E-28 181.7 9.4 134 8-151 49-219 (273)
72 1ihb_A P18-INK4C(INK6), cyclin 99.9 2.1E-23 7.3E-28 167.0 8.7 125 11-150 3-127 (162)
73 3deo_A Signal recognition part 99.9 1.2E-23 3.9E-28 172.7 7.0 133 10-147 41-180 (183)
74 3utm_A Tankyrase-1; tankyrase, 99.9 8.8E-23 3E-27 182.5 13.0 133 2-148 80-302 (351)
75 2jab_A H10-2-G3; HER2, darpin, 99.9 1.2E-22 4.1E-27 158.4 12.1 101 2-106 36-136 (136)
76 1n11_A Ankyrin; clathrin, BAND 99.9 5.9E-23 2E-27 190.2 11.9 134 2-149 234-367 (437)
77 1d9s_A Cyclin-dependent kinase 99.9 1.8E-23 6.3E-28 163.1 6.8 102 2-108 34-136 (136)
78 3eu9_A Huntingtin-interacting 99.9 3.1E-23 1.1E-27 175.7 8.3 126 8-147 4-130 (240)
79 3jxi_A Vanilloid receptor-rela 99.9 1.8E-23 6.2E-28 180.3 6.9 139 3-151 32-211 (260)
80 3v30_A DNA-binding protein rfx 99.9 8.5E-23 2.9E-27 165.3 10.3 123 13-149 2-125 (172)
81 3twr_A Tankyrase-2; ankyrin re 99.9 4.3E-23 1.5E-27 165.9 8.3 128 8-149 3-131 (165)
82 1awc_B Protein (GA binding pro 99.9 5.5E-23 1.9E-27 163.4 8.3 122 13-149 2-123 (153)
83 3f6q_A Integrin-linked protein 99.9 1.1E-22 3.8E-27 165.9 10.3 125 11-149 3-128 (179)
84 2l6b_A NR1C; ankyrin, consensu 99.9 2.8E-23 9.6E-28 157.1 6.2 98 7-108 3-100 (115)
85 3ui2_A Signal recognition part 99.9 5.5E-23 1.9E-27 176.5 8.3 134 10-148 42-182 (244)
86 2vge_A RELA-associated inhibit 99.9 5.2E-25 1.8E-29 187.5 -5.3 139 3-145 44-207 (229)
87 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.1E-22 7.3E-27 160.2 9.5 123 13-150 2-125 (156)
88 4g8k_A 2-5A-dependent ribonucl 99.9 7.2E-22 2.5E-26 176.8 13.7 133 6-153 161-329 (337)
89 1wdy_A 2-5A-dependent ribonucl 99.9 5.2E-22 1.8E-26 172.2 12.0 128 10-151 145-279 (285)
90 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1E-21 3.5E-26 149.9 12.0 102 3-108 25-126 (126)
91 3eu9_A Huntingtin-interacting 99.9 3.9E-22 1.3E-26 168.9 9.2 123 11-147 74-198 (240)
92 2b0o_E UPLC1; arfgap, structur 99.9 1.1E-22 3.8E-27 180.1 4.9 117 3-139 174-299 (301)
93 1ycs_B 53BP2, P53BP2; ankyrin 99.9 9.5E-23 3.2E-27 174.3 4.0 165 10-209 2-167 (239)
94 3jue_A Arfgap with coiled-coil 99.9 4.6E-22 1.6E-26 180.7 8.7 131 7-149 193-324 (368)
95 1dcq_A PYK2-associated protein 99.8 1.7E-21 5.7E-26 170.7 9.4 128 13-150 130-262 (278)
96 1dcq_A PYK2-associated protein 99.8 3.2E-21 1.1E-25 168.9 10.8 100 6-109 162-264 (278)
97 2zgd_A 3 repeat synthetic anky 99.8 6.4E-21 2.2E-25 143.3 9.9 95 4-102 15-109 (110)
98 2b0o_E UPLC1; arfgap, structur 99.8 5.1E-21 1.7E-25 169.4 10.2 129 12-150 150-283 (301)
99 3lvq_E ARF-GAP with SH3 domain 99.8 3.5E-21 1.2E-25 181.8 9.6 127 14-150 133-264 (497)
100 1sw6_A Regulatory protein SWI6 99.8 3.2E-22 1.1E-26 179.0 1.9 121 2-136 153-326 (327)
101 3lvq_E ARF-GAP with SH3 domain 99.8 8.8E-21 3E-25 179.1 11.3 105 2-110 154-267 (497)
102 3aaa_C Myotrophin, protein V-1 99.8 6.4E-21 2.2E-25 145.9 8.2 90 2-95 29-118 (123)
103 3c5r_A BARD-1, BRCA1-associate 99.8 2.6E-21 8.9E-26 150.8 5.9 103 2-108 32-134 (137)
104 3ehr_A Osteoclast-stimulating 99.8 7.2E-21 2.5E-25 160.4 7.9 106 2-111 95-201 (222)
105 3jue_A Arfgap with coiled-coil 99.8 2.3E-20 7.7E-25 169.6 11.3 123 2-135 222-346 (368)
106 4hbd_A KN motif and ankyrin re 99.8 3.1E-20 1.1E-24 162.2 11.0 100 3-106 173-273 (276)
107 3deo_A Signal recognition part 99.8 4.1E-20 1.4E-24 151.4 10.9 93 3-98 66-158 (183)
108 3t8k_A Uncharacterized protein 99.8 6.6E-21 2.3E-25 157.0 5.4 100 2-105 64-176 (186)
109 3ui2_A Signal recognition part 99.8 8.9E-20 3E-24 156.4 10.8 100 3-105 67-182 (244)
110 2aja_A Ankyrin repeat family p 99.8 1.3E-20 4.4E-25 171.7 4.5 130 8-149 87-222 (376)
111 1n0q_A 3ANK, 3 ankyrin repeats 99.8 7.5E-20 2.6E-24 133.0 6.7 91 49-149 1-91 (93)
112 2aja_A Ankyrin repeat family p 99.8 9.6E-20 3.3E-24 165.9 1.5 120 8-149 123-248 (376)
113 2zgd_A 3 repeat synthetic anky 99.7 1.2E-17 4.2E-22 125.2 5.7 88 48-145 22-109 (110)
114 2l6b_A NR1C; ankyrin, consensu 99.7 8.9E-18 3.1E-22 126.6 4.3 96 47-152 6-102 (115)
115 2ea5_A Cell growth regulator w 98.8 2.7E-09 9.2E-14 72.3 2.6 49 172-235 14-63 (68)
116 2vje_A E3 ubiquitin-protein li 98.8 3E-09 1E-13 71.2 2.7 53 172-235 7-62 (64)
117 2vje_B MDM4 protein; proto-onc 98.7 4.7E-09 1.6E-13 70.0 3.2 54 172-236 6-62 (63)
118 4ic3_A E3 ubiquitin-protein li 98.6 1E-08 3.5E-13 70.7 1.5 49 172-235 23-72 (74)
119 2ysl_A Tripartite motif-contai 98.6 1E-07 3.5E-12 65.3 6.4 55 168-230 15-69 (73)
120 2ecg_A Baculoviral IAP repeat- 98.6 5.1E-09 1.7E-13 72.5 -0.4 48 171-233 23-71 (75)
121 2yho_A E3 ubiquitin-protein li 98.6 1.8E-08 6.1E-13 70.3 2.3 49 172-235 17-66 (79)
122 2d8t_A Dactylidin, ring finger 98.6 6.4E-08 2.2E-12 66.0 4.6 50 170-230 12-61 (71)
123 2ecn_A Ring finger protein 141 98.4 1E-07 3.6E-12 64.7 3.3 51 169-231 11-61 (70)
124 2csy_A Zinc finger protein 183 98.4 3.2E-07 1.1E-11 64.2 5.1 49 171-230 13-61 (81)
125 1e4u_A Transcriptional repress 98.4 1.3E-07 4.5E-12 65.7 3.0 52 172-233 10-65 (78)
126 2djb_A Polycomb group ring fin 98.4 2.4E-07 8.3E-12 63.3 4.4 51 169-230 11-62 (72)
127 2ecw_A Tripartite motif-contai 98.4 4.5E-07 1.5E-11 63.8 5.5 56 170-230 16-71 (85)
128 2ecy_A TNF receptor-associated 98.4 2.3E-07 7.9E-12 62.2 3.7 50 171-230 13-62 (66)
129 4ayc_A E3 ubiquitin-protein li 98.4 2.7E-07 9.2E-12 71.5 4.4 48 173-231 53-100 (138)
130 2yur_A Retinoblastoma-binding 98.3 3.1E-07 1.1E-11 63.1 3.7 51 169-228 11-62 (74)
131 2ea6_A Ring finger protein 4; 98.3 3.2E-07 1.1E-11 61.9 3.5 50 170-230 12-68 (69)
132 3ztg_A E3 ubiquitin-protein li 98.3 5E-07 1.7E-11 64.8 4.6 50 171-229 11-61 (92)
133 2egp_A Tripartite motif-contai 98.3 2.8E-07 9.4E-12 64.1 3.0 56 171-230 10-65 (79)
134 1chc_A Equine herpes virus-1 r 98.3 2.9E-07 9.9E-12 62.1 2.9 50 172-232 4-54 (68)
135 1iym_A EL5; ring-H2 finger, ub 98.3 3.2E-07 1.1E-11 59.0 3.0 47 172-229 4-54 (55)
136 2ct2_A Tripartite motif protei 98.3 7.1E-07 2.4E-11 63.3 4.9 53 170-230 12-68 (88)
137 1g25_A CDK-activating kinase a 98.3 3.5E-07 1.2E-11 61.1 3.0 51 172-232 2-57 (65)
138 2ecm_A Ring finger and CHY zin 98.3 3.6E-07 1.2E-11 58.8 2.8 47 172-229 4-54 (55)
139 2kiz_A E3 ubiquitin-protein li 98.3 6.9E-07 2.4E-11 60.3 4.4 51 171-232 12-65 (69)
140 1t1h_A Gspef-atpub14, armadill 98.3 6.6E-07 2.3E-11 62.0 4.3 51 171-231 6-56 (78)
141 2ecv_A Tripartite motif-contai 98.3 5.5E-07 1.9E-11 63.3 3.9 57 169-230 15-71 (85)
142 3fl2_A E3 ubiquitin-protein li 98.3 4.6E-07 1.6E-11 68.8 3.7 49 172-230 51-99 (124)
143 2xeu_A Ring finger protein 4; 98.3 3.8E-07 1.3E-11 60.5 2.8 52 172-234 2-60 (64)
144 3lrq_A E3 ubiquitin-protein li 98.3 3.4E-07 1.2E-11 66.8 2.6 49 172-230 21-70 (100)
145 3ng2_A RNF4, snurf, ring finge 98.3 3.9E-07 1.3E-11 61.9 2.7 48 172-230 9-63 (71)
146 2l0b_A E3 ubiquitin-protein li 98.2 4.8E-07 1.6E-11 64.8 3.1 48 172-230 39-89 (91)
147 2ep4_A Ring finger protein 24; 98.2 6.8E-07 2.3E-11 61.3 3.6 52 169-231 11-65 (74)
148 2ysj_A Tripartite motif-contai 98.2 1.7E-06 5.9E-11 57.2 5.3 48 169-224 16-63 (63)
149 1z6u_A NP95-like ring finger p 98.2 9.2E-07 3.1E-11 69.5 3.7 50 172-231 77-126 (150)
150 1bor_A Transcription factor PM 98.2 3E-07 1E-11 59.5 0.6 44 172-229 5-48 (56)
151 3t6p_A Baculoviral IAP repeat- 98.2 8.6E-07 2.9E-11 78.9 3.5 52 169-235 291-343 (345)
152 2ect_A Ring finger protein 126 98.1 8.3E-07 2.8E-11 61.5 2.4 49 171-230 13-64 (78)
153 2y1n_A E3 ubiquitin-protein li 98.1 1.3E-06 4.5E-11 78.4 4.1 53 173-235 332-384 (389)
154 2y43_A E3 ubiquitin-protein li 98.1 1.3E-06 4.4E-11 63.5 3.1 49 171-230 20-69 (99)
155 1x4j_A Ring finger protein 38; 98.1 1.1E-06 3.7E-11 60.4 2.4 49 171-230 21-72 (75)
156 2ckl_A Polycomb group ring fin 98.1 1.5E-06 5.2E-11 64.2 3.1 49 171-230 13-62 (108)
157 2ckl_B Ubiquitin ligase protei 98.1 2.1E-06 7.1E-11 68.5 3.8 48 172-229 53-101 (165)
158 3l11_A E3 ubiquitin-protein li 98.1 7.1E-07 2.4E-11 66.8 0.8 49 172-230 14-62 (115)
159 2ecj_A Tripartite motif-contai 98.0 4.1E-06 1.4E-10 54.3 4.1 47 170-224 12-58 (58)
160 3hct_A TNF receptor-associated 98.0 3.2E-06 1.1E-10 63.5 3.9 52 170-231 15-66 (118)
161 1jm7_A BRCA1, breast cancer ty 98.0 1.8E-06 6.3E-11 64.1 2.5 50 173-230 21-70 (112)
162 1v87_A Deltex protein 2; ring- 98.0 3.1E-06 1.1E-10 63.1 3.7 52 173-230 25-94 (114)
163 3knv_A TNF receptor-associated 97.9 2.5E-06 8.4E-11 66.3 1.9 51 169-229 27-77 (141)
164 4ap4_A E3 ubiquitin ligase RNF 97.9 4.9E-06 1.7E-10 63.6 3.4 56 171-237 5-67 (133)
165 2kr4_A Ubiquitin conjugation f 97.9 9.3E-06 3.2E-10 57.2 4.4 53 167-230 8-60 (85)
166 1rmd_A RAG1; V(D)J recombinati 97.9 5.6E-06 1.9E-10 61.9 3.5 49 172-230 22-70 (116)
167 2ecl_A Ring-box protein 2; RNF 97.9 1E-05 3.5E-10 56.5 4.3 48 173-231 15-77 (81)
168 2kre_A Ubiquitin conjugation f 97.9 1.9E-05 6.4E-10 57.4 5.4 53 167-230 23-75 (100)
169 1wgm_A Ubiquitin conjugation f 97.9 2.8E-05 9.5E-10 56.3 6.0 53 167-230 16-69 (98)
170 1jm7_B BARD1, BRCA1-associated 97.7 5.3E-06 1.8E-10 62.2 -0.4 45 172-229 21-66 (117)
171 2c2l_A CHIP, carboxy terminus 97.7 1.8E-05 6.3E-10 68.3 2.9 50 171-230 206-255 (281)
172 3hcs_A TNF receptor-associated 97.7 2.3E-05 7.8E-10 62.7 3.2 53 169-231 14-66 (170)
173 3htk_C E3 SUMO-protein ligase 97.6 0.00016 5.3E-09 61.2 7.4 57 167-232 175-234 (267)
174 3dpl_R Ring-box protein 1; ubi 97.5 5.7E-05 1.9E-09 55.4 3.6 46 172-228 36-99 (106)
175 4ap4_A E3 ubiquitin ligase RNF 97.5 6E-05 2.1E-09 57.3 3.1 55 170-235 69-130 (133)
176 2yu4_A E3 SUMO-protein ligase 97.4 0.00014 4.8E-09 52.1 3.8 54 172-230 6-63 (94)
177 2f42_A STIP1 homology and U-bo 97.4 0.00011 3.8E-09 58.9 3.5 51 171-231 104-154 (179)
178 1wim_A KIAA0161 protein; ring 97.3 7.7E-05 2.6E-09 53.4 2.2 53 172-227 4-61 (94)
179 4a0k_B E3 ubiquitin-protein li 97.2 7.2E-05 2.5E-09 55.7 0.4 46 172-228 47-110 (117)
180 2d8s_A Cellular modulator of i 96.5 0.0012 4E-08 45.7 2.5 49 172-229 14-69 (80)
181 3vk6_A E3 ubiquitin-protein li 96.4 0.0031 1E-07 44.8 4.1 50 176-235 4-54 (101)
182 3k1l_B Fancl; UBC, ring, RWD, 95.2 0.0046 1.6E-07 54.2 0.8 88 141-230 277-373 (381)
183 2bay_A PRE-mRNA splicing facto 94.4 0.0087 3E-07 38.9 0.5 52 174-236 4-56 (61)
184 2ct0_A Non-SMC element 1 homol 94.2 0.056 1.9E-06 36.4 4.1 49 172-229 14-63 (74)
185 1vyx_A ORF K3, K3RING; zinc-bi 93.7 0.036 1.2E-06 35.8 2.4 49 172-229 5-58 (60)
186 1weo_A Cellulose synthase, cat 83.0 1.2 4E-05 30.7 3.4 50 172-231 15-71 (93)
187 2cs3_A Protein C14ORF4, MY039 81.6 1 3.4E-05 30.3 2.6 56 170-225 12-71 (93)
188 2jun_A Midline-1; B-BOX, TRIM, 75.3 1.5 5E-05 30.9 2.2 31 173-203 3-36 (101)
189 2ko5_A Ring finger protein Z; 71.1 2.5 8.7E-05 29.4 2.4 49 172-232 27-75 (99)
190 2lri_C Autoimmune regulator; Z 61.7 16 0.00053 23.6 4.7 48 173-227 12-59 (66)
191 2l5u_A Chromodomain-helicase-D 58.8 16 0.00054 23.0 4.4 50 170-226 8-57 (61)
192 3nw0_A Non-structural maintena 51.3 13 0.00043 30.8 3.7 49 172-229 179-228 (238)
193 1wil_A KIAA1045 protein; ring 51.0 22 0.00076 24.1 4.1 54 172-225 14-74 (89)
194 2d8v_A Zinc finger FYVE domain 51.0 5.5 0.00019 25.7 1.1 31 172-203 7-38 (67)
195 2lbm_A Transcriptional regulat 47.5 15 0.00052 27.7 3.3 56 172-227 62-117 (142)
196 2zet_C Melanophilin; complex, 46.8 0.91 3.1E-05 35.0 -3.7 46 172-227 67-117 (153)
197 3ql9_A Transcriptional regulat 42.9 5.2 0.00018 29.8 0.0 56 172-227 56-111 (129)
198 3u5n_A E3 ubiquitin-protein li 41.0 10 0.00034 30.6 1.5 49 172-227 6-54 (207)
199 3o36_A Transcription intermedi 40.7 12 0.0004 29.5 1.8 49 172-227 3-51 (184)
200 2pv0_B DNA (cytosine-5)-methyl 39.7 22 0.00077 31.5 3.6 65 169-234 89-155 (386)
201 3zrh_A Ubiquitin thioesterase 35.8 46 0.0016 29.8 4.9 52 20-72 29-91 (454)
202 1z2q_A LM5-1; membrane protein 35.8 11 0.00038 25.5 0.8 32 169-200 17-52 (84)
203 2yql_A PHD finger protein 21A; 34.6 9.2 0.00031 23.7 0.2 48 172-226 8-55 (56)
204 3a1b_A DNA (cytosine-5)-methyl 32.1 30 0.001 26.6 2.8 61 169-230 75-137 (159)
205 1mm2_A MI2-beta; PHD, zinc fin 31.9 18 0.00063 22.7 1.3 48 172-227 8-56 (61)
206 3mpx_A FYVE, rhogef and PH dom 31.7 9.9 0.00034 34.2 0.0 54 171-228 373-430 (434)
207 2k16_A Transcription initiatio 31.5 30 0.001 22.6 2.4 51 172-229 17-70 (75)
208 3bya_B Glutamate [NMDA] recept 30.7 4.6 0.00016 20.2 -1.3 21 268-288 4-25 (26)
209 2puy_A PHD finger protein 21A; 28.8 11 0.00039 23.6 -0.1 49 172-227 4-52 (60)
210 3zrh_A Ubiquitin thioesterase 24.8 1.1E+02 0.0039 27.3 5.5 48 57-104 29-90 (454)
211 1fp0_A KAP-1 corepressor; PHD 24.8 33 0.0011 23.5 1.7 49 170-226 22-71 (88)
212 2csz_A Synaptotagmin-like prot 24.3 3.3 0.00011 27.7 -3.4 46 172-228 24-74 (76)
213 2yw8_A RUN and FYVE domain-con 23.9 11 0.00038 25.4 -0.9 29 172-200 18-50 (82)
214 1xwh_A Autoimmune regulator; P 23.6 22 0.00077 22.7 0.6 48 172-226 7-54 (66)
215 1joc_A EEA1, early endosomal a 23.4 17 0.0006 26.7 0.1 30 172-201 68-101 (125)
216 2l43_A N-teminal domain from h 22.9 48 0.0017 22.5 2.3 50 172-230 24-78 (88)
217 1gp8_A Protein (scaffolding pr 21.6 66 0.0023 18.2 2.2 17 17-33 17-33 (40)
218 1z60_A TFIIH basal transcripti 20.6 48 0.0017 20.8 1.7 40 174-224 16-58 (59)
219 2ro1_A Transcription intermedi 20.4 34 0.0012 27.0 1.2 47 174-227 3-49 (189)
220 1x4u_A Zinc finger, FYVE domai 20.2 15 0.00051 24.9 -0.9 29 172-200 13-45 (84)
221 2ku3_A Bromodomain-containing 20.1 76 0.0026 20.6 2.7 48 171-227 14-66 (71)
No 1
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=5.3e-30 Score=208.50 Aligned_cols=134 Identities=33% Similarity=0.426 Sum_probs=126.8
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV 81 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 81 (298)
.|+++|.+|..|+||||+|+..++.+++++|+++|++++.++. .|+||||+|+..|+.++|++|+++|++++.+|.
T Consensus 26 ~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~----~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~ 101 (169)
T 4gpm_A 26 NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS----DGRTPLHHAAENGHKEVVKLLISKGADVNAKDS 101 (169)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhcc----CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCC
Confidence 4789999999999999999999999999999999999999887 899999999999999999999999999999999
Q ss_pred CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054 82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT 149 (298)
Q Consensus 82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~ 149 (298)
.|+||||+|+..|+.+++++|+++|++ ++..|.+|+|||++|+..++.+++++|++.+
T Consensus 102 ~G~TpLh~A~~~g~~~~v~~Ll~~gad----------~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G 159 (169)
T 4gpm_A 102 DGRTPLHHAAENGHKEVVKLLISKGAD----------VNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159 (169)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCC----------ccccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 999999999999999999999999999 4567888999999999999999999887754
No 2
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=6.3e-28 Score=188.61 Aligned_cols=131 Identities=20% Similarity=0.176 Sum_probs=123.5
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS 82 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~ 82 (298)
+.++|.+|..|.||||+|+..|+.+++++|+++|++++..+. .|+||||+|+. |+.+++++|+++|++++.+|..
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~ 76 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNR----FGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPA 76 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTT
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCC----CCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCC
Confidence 468999999999999999999999999999999999998887 89999999999 9999999999999999999999
Q ss_pred -CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054 83 -GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG 148 (298)
Q Consensus 83 -g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~ 148 (298)
|.||||+|+..++.+++++|+++|+++ +..+..|.|||++|+..++.+++++|++.
T Consensus 77 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~----------~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ 133 (136)
T 1d9s_A 77 TLTRPVHDAAREGFLDTLVVLHRAGARL----------DVCDAWGRLPVDLAEEQGHRDIARYLHAA 133 (136)
T ss_dssp TTBCHHHHHHHHTCHHHHHHHHHTCCCC----------CCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCC----------CccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 999999999999999999999999984 55677899999999999999999988764
No 3
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=2.5e-26 Score=186.01 Aligned_cols=133 Identities=32% Similarity=0.367 Sum_probs=122.2
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV 81 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 81 (298)
.+.++|.+|..|+||||+|+..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus 36 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~ 111 (169)
T 2y1l_E 36 NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH----AGMTPLRLAALFGHLEIVEVLLKNGADVNANDM 111 (169)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence 4678999999999999999999999999999999999988877 799999999999999999999999999999999
Q ss_pred CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054 82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG 148 (298)
Q Consensus 82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~ 148 (298)
.|.||||+|+..++.+++++|+++|++ ++..+..|.|||++|+..++.+++++|++-
T Consensus 112 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 168 (169)
T 2y1l_E 112 EGHTPLHLAAMFGHLEIVEVLLKNGAD----------VNAQDKFGKTAFDISIDNGNEDLAEILQKL 168 (169)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCC----------CCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 999999999999999999999999998 455677889999999999999999988763
No 4
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.93 E-value=4e-27 Score=184.06 Aligned_cols=132 Identities=23% Similarity=0.147 Sum_probs=118.7
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS 82 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~ 82 (298)
|.|+ .+|..|+||||+|+..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 75 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDH----AGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ 75 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGG
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCC
Confidence 4566 7899999999999999999999999999999998887 8999999999999999999999999999999999
Q ss_pred CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054 83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT 149 (298)
Q Consensus 83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~ 149 (298)
|.||||+|+..++.+++++|+++|++ ++..|..|.|||++|...+..++++++.+..
T Consensus 76 g~t~L~~A~~~~~~~~v~~Ll~~ga~----------~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 76 NDSPLHDAAKNGHVDIVKLLLSYGAS----------RNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp GCCHHHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCC----------CCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 99999999999999999999999998 4667889999999999999988888776654
No 5
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.93 E-value=5.9e-27 Score=203.83 Aligned_cols=209 Identities=19% Similarity=0.162 Sum_probs=165.8
Q ss_pred cccCCCCCCcHHHHHHHcCChHHHHHHHhCCCC---ccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGAL---VCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS 82 (298)
Q Consensus 6 vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~---~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~ 82 (298)
++.+|..|+||||+|+..|+.++|++|+++|++ ++..+. .|+||||+|+..|+.++|++|+++|++++.+|..
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~ 77 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQND----LGQTALHLAAILGEASTVEKLYAAGAGVLVAERG 77 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCT----TSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTT
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Confidence 688999999999999999999999999999988 666665 8999999999999999999999999999999999
Q ss_pred CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCC-------------------------------------hhhhhHhhHH
Q 041054 83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSP-------------------------------------LKFISELNQE 125 (298)
Q Consensus 83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~-------------------------------------~~~~~~~~~~ 125 (298)
|+||||+|+..++.+++++|++++++....... ...++..+..
T Consensus 78 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (282)
T 1oy3_D 78 GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD 157 (282)
T ss_dssp SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTT
T ss_pred CCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCC
Confidence 999999999999999999999998764322110 1124456778
Q ss_pred HHHHHHHHHHhhhHHHHHHHhc-CCCCCCCCCCCCCCCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHh
Q 041054 126 AKALLENALMEANKEREKNILK-GTAYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALC 204 (298)
Q Consensus 126 ~~t~L~~A~~~~~~~~~~~ll~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~ 204 (298)
|.||||+|+..++.+++++|++ ++++...... . +...-.+... .||..++..++..+
T Consensus 158 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--~-----------g~tpL~~A~~---------~~~~~~v~~Ll~~g 215 (282)
T 1oy3_D 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT--C-----------GRTPLHLAVE---------AQAASVLELLLKAG 215 (282)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT--T-----------CCCHHHHHHH---------TTCHHHHHHHHHTT
T ss_pred CcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC--C-----------CcCHHHHHHH---------cCCHHHHHHHHHcC
Confidence 9999999999999999888876 4443321110 0 0111111111 37888999999998
Q ss_pred hcCCCCCCCC-CCCCCCCcccccccceeEEEEeecCC
Q 041054 205 CHNKPNPTTA-CLTPPVCPFCRSTIAHLVVVKIENQE 240 (298)
Q Consensus 205 ~~~~~~~~~~-~~~~~~Cp~cr~~I~~~~~~~~~~~~ 240 (298)
+..+..+..+ ||++.++...+..|+++++......+
T Consensus 216 ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 252 (282)
T 1oy3_D 216 ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252 (282)
T ss_dssp CCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCC
T ss_pred CCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcC
Confidence 8877766666 99999999999999999987644433
No 6
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.93 E-value=4.6e-26 Score=183.74 Aligned_cols=132 Identities=25% Similarity=0.297 Sum_probs=124.7
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS 82 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~ 82 (298)
+.++|.+|..|+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..
T Consensus 26 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~ 101 (167)
T 3v31_A 26 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK----GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN 101 (167)
T ss_dssp SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT
T ss_pred CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCC----CCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCC
Confidence 578999999999999999999999999999999999998887 8999999999999999999999999999999999
Q ss_pred CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054 83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG 148 (298)
Q Consensus 83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~ 148 (298)
|.||||+|+..++.+++++|+++|+++ +..+..|.|||++|+..++.+++++|++.
T Consensus 102 g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (167)
T 3v31_A 102 GGTPLLYAVHGNHVKCVKMLLESGADP----------TIETDSGYNSMDLAVALGYRSVQQVIESH 157 (167)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC----------CCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence 999999999999999999999999984 55678899999999999999999988764
No 7
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.93 E-value=2.9e-26 Score=200.02 Aligned_cols=134 Identities=29% Similarity=0.373 Sum_probs=126.8
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV 81 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 81 (298)
.|+++|.+|.+|+||||+|+..|+.++|++|++.|++++..+. .|.||||+|+..++.+++++|++.|++++.+|.
T Consensus 75 ~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~----~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~ 150 (269)
T 4b93_B 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNA----DQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDL 150 (269)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCT----TCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT
T ss_pred CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCC----CCCCccccccccChHHHHHHHHHCCCCCCCCCC
Confidence 4789999999999999999999999999999999999998887 899999999999999999999999999999999
Q ss_pred CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054 82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT 149 (298)
Q Consensus 82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~ 149 (298)
.|+||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..++.+++++|++.+
T Consensus 151 ~g~TpL~~A~~~g~~~~v~~Ll~~gad----------vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G 208 (269)
T 4b93_B 151 SGNTPLIYACSGGHHELVALLLQHGAS----------INASNNKGNTALHEAVIEKHVFVVELLLLHG 208 (269)
T ss_dssp TCCCHHHHHHHTTCGGGHHHHHHTTCC----------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHCCCC----------CCccccCCCcHHHHHHHcCCHHHHHHHHHCC
Confidence 999999999999999999999999999 4667888999999999999999999887643
No 8
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.93 E-value=4.4e-26 Score=186.20 Aligned_cols=134 Identities=27% Similarity=0.281 Sum_probs=125.3
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS 82 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~ 82 (298)
+.+++.+|..|+||||+|+..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..
T Consensus 29 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~ 104 (179)
T 3f6q_A 29 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR----GDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH 104 (179)
T ss_dssp TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC
Confidence 568999999999999999999999999999999999998887 8999999999999999999999999999999999
Q ss_pred CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCC
Q 041054 83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTA 150 (298)
Q Consensus 83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~ 150 (298)
|.||||+|+..++.+++++|+++|+++ +..+..|.|||++|...++.+++++|++.+.
T Consensus 105 g~t~L~~A~~~~~~~~v~~Ll~~ga~~----------~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~ 162 (179)
T 3f6q_A 105 GNVPLHYACFWGQDQVAEDLVANGALV----------SICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162 (179)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCS----------SBCCTTSCCGGGGSCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCc----------chhccCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999984 5578889999999999999998888876543
No 9
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.93 E-value=4.9e-26 Score=184.49 Aligned_cols=131 Identities=26% Similarity=0.284 Sum_probs=123.4
Q ss_pred CcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCC
Q 041054 5 FVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGR 84 (298)
Q Consensus 5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~ 84 (298)
+++.+|..|+||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|.
T Consensus 28 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 103 (172)
T 3v30_A 28 LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAK----ERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG 103 (172)
T ss_dssp GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSC
T ss_pred cccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcc----cCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCC
Confidence 4889999999999999999999999999999999998887 899999999999999999999999999999999999
Q ss_pred cHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054 85 IPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT 149 (298)
Q Consensus 85 tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~ 149 (298)
||||+|+..++.+++++|+++|++ ++..+..|.|||++|+..++.+++++|++..
T Consensus 104 t~L~~A~~~~~~~~v~~Ll~~ga~----------~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (172)
T 3v30_A 104 TPLLYAVRGNHVKCVEALLARGAD----------LTTEADSGYTPMDLAVALGYRKVQQVIENHI 158 (172)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC----------ccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence 999999999999999999999998 4557788999999999999999999887643
No 10
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.93 E-value=3.3e-26 Score=183.40 Aligned_cols=134 Identities=25% Similarity=0.274 Sum_probs=124.4
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV 81 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 81 (298)
.+.++|.+|..|+||||+|+. |+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus 27 ~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 101 (162)
T 1ihb_A 27 NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDR----TGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN 101 (162)
T ss_dssp SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence 467899999999999999999 999999999999999998877 899999999999999999999999999999999
Q ss_pred CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054 82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT 149 (298)
Q Consensus 82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~ 149 (298)
.|.||||+|+..++.+++++|+++|+++ ++..+..|.|||++|+..++.+++++|++.+
T Consensus 102 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 160 (162)
T 1ihb_A 102 EGNLPLHLAAKEGHLRVVEFLVKHTASN---------VGHRNHKGDTACDLARLYGRNEVVSLMQANG 160 (162)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHSCCC---------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHccCCC---------CCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence 9999999999999999999999999974 2556778999999999999999999887654
No 11
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.93 E-value=5.7e-26 Score=187.49 Aligned_cols=131 Identities=24% Similarity=0.195 Sum_probs=95.4
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS 82 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~ 82 (298)
+.+++.+|..|+||||+|+..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..
T Consensus 58 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~ 133 (192)
T 2rfm_A 58 FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF----SGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE 133 (192)
T ss_dssp HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTT
T ss_pred ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence 356667777777777777777777777777777777766665 6777777777777777777777777777777777
Q ss_pred CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc
Q 041054 83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK 147 (298)
Q Consensus 83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~ 147 (298)
|.||||+|+..++.+++++|+++|++ ++..+..|.|||++|+..++.+++++|++
T Consensus 134 g~t~L~~A~~~~~~~~v~~Ll~~ga~----------~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 188 (192)
T 2rfm_A 134 GETPLIVASKYGRSEIVKKLLELGAD----------ISARDLTGLTAEASARIFGRQEVIKIFTE 188 (192)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCC----------TTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCC----------CCCcCCCCCCHHHHHHHhCcHHHHHHHHh
Confidence 77777777777777777777777776 34456677777777777777777777664
No 12
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.93 E-value=8.7e-26 Score=179.74 Aligned_cols=128 Identities=27% Similarity=0.326 Sum_probs=119.3
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS 82 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~ 82 (298)
+.+++ .|..|+||||+|+..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..
T Consensus 25 g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~ 99 (153)
T 1awc_B 25 GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK----VDRTPLHMAASEGHANIVEVLLKHGADVNAKDML 99 (153)
T ss_dssp TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT----TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT
T ss_pred CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----CCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCC
Confidence 34454 588999999999999999999999999999998887 8999999999999999999999999999999999
Q ss_pred CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHH
Q 041054 83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNI 145 (298)
Q Consensus 83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~l 145 (298)
|.||||+|+..++.+++++|+++|++ ++..+..|.|||++|+..++.+++++|
T Consensus 100 g~t~L~~A~~~~~~~~v~~Ll~~ga~----------~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 100 KMTALHWATEHNHQEVVELLIKYGAD----------VHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCC----------ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999999999999999999999998 456778899999999999999998876
No 13
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.93 E-value=4.9e-26 Score=183.20 Aligned_cols=131 Identities=25% Similarity=0.233 Sum_probs=96.1
Q ss_pred CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Q 041054 4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSG 83 (298)
Q Consensus 4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g 83 (298)
.+++..|..|+||||+|+..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus 33 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 108 (165)
T 3twr_A 33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK----GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK 108 (165)
T ss_dssp TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred CCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCC----CCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCC
Confidence 45566677777777777777777777777777777777666 67777777777777777777777777777777777
Q ss_pred CcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054 84 RIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT 149 (298)
Q Consensus 84 ~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~ 149 (298)
+||||+|+..++.+++++|+++|++ ++..+..|.|||++|.. ++.+++++|++.+
T Consensus 109 ~t~L~~A~~~~~~~~v~~Ll~~ga~----------~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g 163 (165)
T 3twr_A 109 FTPLHEAAAKGKYEICKLLLQHGAD----------PTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA 163 (165)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCC----------CcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence 7777777777777777777777777 34456677777777655 6667777776544
No 14
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.92 E-value=1.3e-25 Score=178.91 Aligned_cols=130 Identities=23% Similarity=0.290 Sum_probs=121.9
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS 82 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~ 82 (298)
+.+++.+|..|+||||+ +..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..
T Consensus 26 ~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~ 100 (156)
T 1bd8_A 26 LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDT----SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT 100 (156)
T ss_dssp CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT
T ss_pred CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCC----CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCC
Confidence 45889999999999999 999999999999999999998887 8999999999999999999999999999999999
Q ss_pred CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054 83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG 148 (298)
Q Consensus 83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~ 148 (298)
|.||||+|+..++.+++++|+++ ++ ++..+..|.|||++|+..++.+++++|++.
T Consensus 101 g~t~L~~A~~~~~~~~v~~Ll~~-~~----------~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 101 GALPIHLAVQEGHTAVVSFLAAE-SD----------LHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHTT-SC----------TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred CCcHHHHHHHhChHHHHHHHHhc-cC----------CCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 99999999999999999999999 77 456788899999999999999999998763
No 15
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=7.1e-26 Score=176.88 Aligned_cols=126 Identities=27% Similarity=0.268 Sum_probs=117.1
Q ss_pred CCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHH
Q 041054 9 RDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYA 88 (298)
Q Consensus 9 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~ 88 (298)
....|.||||+|+..|+.++|++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~ 85 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDE----YGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLH 85 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence 456789999999999999999999999999998877 8999999999999999999999999999999999999999
Q ss_pred HHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054 89 VALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG 148 (298)
Q Consensus 89 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~ 148 (298)
+|+..++.+++++|+++|++ ++..+..|.|||++|+..++.+++++|++.
T Consensus 86 ~A~~~~~~~~v~~Ll~~g~~----------~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 86 LAAFIGHLEIAEVLLKHGAD----------VNAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp HHHHHTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHcCCC----------CcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 99999999999999999998 456778899999999999999999988763
No 16
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.92 E-value=6.2e-26 Score=197.11 Aligned_cols=143 Identities=26% Similarity=0.247 Sum_probs=130.6
Q ss_pred CCCCcccC-CCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054 2 YARFVNIR-DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD 80 (298)
Q Consensus 2 ~~~~vn~~-d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d 80 (298)
.+.+++.+ +..|+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++..|
T Consensus 27 ~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 102 (285)
T 1wdy_A 27 GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK----NGATPFLLAAIAGSVKLLKLFLSKGADVNECD 102 (285)
T ss_dssp TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBC
T ss_pred cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence 35678877 88899999999999999999999999999998877 89999999999999999999999999999999
Q ss_pred cCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054 81 VSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG 148 (298)
Q Consensus 81 ~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~ 148 (298)
..|.||||+|+..++.+++++|+++|+++.............+..+.|+|+.|+..++.++++.|++.
T Consensus 103 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 170 (285)
T 1wdy_A 103 FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 170 (285)
T ss_dssp TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred cccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999999999999999998776655555566677889999999999999999988864
No 17
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.92 E-value=2.2e-26 Score=202.19 Aligned_cols=199 Identities=17% Similarity=0.043 Sum_probs=165.7
Q ss_pred CcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCC
Q 041054 5 FVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGR 84 (298)
Q Consensus 5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~ 84 (298)
++|.+|..|+||||+|+..|+.++|++|+++|++++..+ |+||||+|+..|+.+++++|+++|++++.+|..|+
T Consensus 23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~------g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~ 96 (285)
T 3kea_A 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE------NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGN 96 (285)
T ss_dssp TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT------TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC------CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence 689999999999999999999999999999999988763 79999999999999999999999999999999999
Q ss_pred cHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHH-HHHHHHHHHhhhHHHHHHHhcCCCCCCCCCCCCCCCC
Q 041054 85 IPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEA-KALLENALMEANKEREKNILKGTAYSLPSPSHSDVGA 163 (298)
Q Consensus 85 tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~-~t~L~~A~~~~~~~~~~~ll~~~~~~~~~p~~~~~~~ 163 (298)
||||+|+..|+.+++++|+++|++ ++..+..| .||||+|+..++.+++++|++.+.... ....
T Consensus 97 t~L~~A~~~g~~~~v~~Ll~~ga~----------~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~--- 160 (285)
T 3kea_A 97 TALYYAVDSGNMQTVKLFVKKNWR----------LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF---DLAI--- 160 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHCGG----------GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC---CCST---
T ss_pred cHHHHHHHcCCHHHHHHHHhcCCC----------CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc---cccC---
Confidence 999999999999999999999998 56777788 799999999999999999887653211 0000
Q ss_pred cccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CC-CCCCCcccccccceeEEEEeecCCC
Q 041054 164 DDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CL-TPPVCPFCRSTIAHLVVVKIENQED 241 (298)
Q Consensus 164 ~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~-~~~~Cp~cr~~I~~~~~~~~~~~~~ 241 (298)
+...-.+. ...||..+...++..+++.+..+..+ || ++.++...+..|+++++......+.
T Consensus 161 --------g~t~L~~A---------~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 161 --------LLSCIHIT---------IKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS 223 (285)
T ss_dssp --------HHHHHHHH---------HHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTT
T ss_pred --------CccHHHHH---------HHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 00000111 12388889999999999988777666 76 9999999999999999877554443
Q ss_pred C
Q 041054 242 A 242 (298)
Q Consensus 242 ~ 242 (298)
.
T Consensus 224 ~ 224 (285)
T 3kea_A 224 A 224 (285)
T ss_dssp T
T ss_pred C
Confidence 3
No 18
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.92 E-value=7.1e-25 Score=186.45 Aligned_cols=132 Identities=26% Similarity=0.300 Sum_probs=73.6
Q ss_pred cccCCCCCCcHHHHHHHcCChHHHHHHHh----CCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054 6 VNIRDGRGATPLHLAARQRRPECVHILLD----SGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV 81 (298)
Q Consensus 6 vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~----~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 81 (298)
++.+|.+|+||||+|+..|+.++|++|++ .|++++..+. .|+||||+|+..|+.+++++|++.|++++.+|.
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 77 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN----LRQTPLHLAVITTLPSVVRLLVTAGASPMALDR 77 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccc----cCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Confidence 34556666666666666666666666654 4556655554 566666666666666666666666666666666
Q ss_pred CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc
Q 041054 82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK 147 (298)
Q Consensus 82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~ 147 (298)
.|.||||+|+..++.+++++|+++++.... .++..+..+.|||++|+..++.+++++|++
T Consensus 78 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 137 (241)
T 1k1a_A 78 HGQTAAHLACEHRSPTCLRALLDSAAPGTL------DLEARNYDGLTALHVAVNTECQETVQLLLE 137 (241)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHSCTTSC------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCccc------cccccCcCCCcHHHHHHHcCCHHHHHHHHH
Confidence 666666666666666666666666552110 023334445555555555555555554443
No 19
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.92 E-value=3.4e-25 Score=180.02 Aligned_cols=121 Identities=30% Similarity=0.387 Sum_probs=114.5
Q ss_pred cHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcC
Q 041054 15 TPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHK 94 (298)
Q Consensus 15 TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~ 94 (298)
++|+.||+.|+.++|++||++|+++|.++. .|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~----~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g 81 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDS----DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG 81 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCC----CCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcC
Confidence 479999999999999999999999999887 8999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054 95 HGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT 149 (298)
Q Consensus 95 ~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~ 149 (298)
+.+++++|+++|++ ++..|.+|.||||+|+..++.+++++|++.+
T Consensus 82 ~~~~v~~Ll~~gad----------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g 126 (169)
T 4gpm_A 82 HKEVVKLLISKGAD----------VNAKDSDGRTPLHHAAENGHKEVVKLLISKG 126 (169)
T ss_dssp CHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CHHHHHHHHHCcCC----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 99999999999999 4667888999999999999999999887643
No 20
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.92 E-value=9.5e-26 Score=194.36 Aligned_cols=196 Identities=20% Similarity=0.186 Sum_probs=159.5
Q ss_pred CCCcc-cCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC-CCcccc
Q 041054 3 ARFVN-IRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGA-DRLHRD 80 (298)
Q Consensus 3 ~~~vn-~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga-d~~~~d 80 (298)
+.+++ ..|..|+||||+|+..|+.++|++|+++|++++..+. .|+||||+|+..|+.+++++|++.|+ +++.+|
T Consensus 46 g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~ 121 (253)
T 1yyh_A 46 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN----MGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121 (253)
T ss_dssp ------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCC
T ss_pred cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC
Confidence 34454 4589999999999999999999999999999998887 89999999999999999999999987 999999
Q ss_pred cCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC-CCCCCCCCCCC
Q 041054 81 VSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG-TAYSLPSPSHS 159 (298)
Q Consensus 81 ~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~-~~~~~~~p~~~ 159 (298)
..|.||||+|+..++.+++++|+++|++ ++..+..|.||||+|+..++.+++++|++. +++.... .
T Consensus 122 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~---~ 188 (253)
T 1yyh_A 122 HDGTTPLILAARLAVEGMLEDLINSHAD----------VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN---N 188 (253)
T ss_dssp TTCCCHHHHHHHHTCSSHHHHHHHTTCC----------TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCC---T
T ss_pred CCCCcHHHHHHHcChHHHHHHHHHcCCC----------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC---C
Confidence 9999999999999999999999999998 456778899999999999999999888765 3332210 0
Q ss_pred CCCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCcccccccceeEEEE
Q 041054 160 DVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRSTIAHLVVVK 235 (298)
Q Consensus 160 ~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I~~~~~~~ 235 (298)
. +...-.+... .||..+...++..++..+..+..+ ||++.++-..+..|+.++...
T Consensus 189 ~-----------g~tpL~~A~~---------~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~ 245 (253)
T 1yyh_A 189 R-----------EETPLFLAAR---------EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLE 245 (253)
T ss_dssp T-----------SCCHHHHHHH---------HTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC-
T ss_pred C-----------CCCHHHHHHH---------CCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 0 1111111112 278889999999988877666666 999999999999998887654
No 21
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.92 E-value=1.9e-25 Score=184.38 Aligned_cols=130 Identities=22% Similarity=0.219 Sum_probs=122.4
Q ss_pred CcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCC
Q 041054 5 FVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGR 84 (298)
Q Consensus 5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~ 84 (298)
.+|.+|..|+||||+|+..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|.
T Consensus 27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 102 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDI----EGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGK 102 (192)
T ss_dssp HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSC
T ss_pred HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccc----cCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence 4688999999999999999999999999999999988877 899999999999999999999999999999999999
Q ss_pred cHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054 85 IPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG 148 (298)
Q Consensus 85 tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~ 148 (298)
||||+|+..++.+++++|+++|+++ +..+..|.||||+|+..++.+++++|++.
T Consensus 103 t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 156 (192)
T 2rfm_A 103 TPLMWSIIFGYSEMSYFLLEHGANV----------NDRNLEGETPLIVASKYGRSEIVKKLLEL 156 (192)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCS----------SCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred cHHHHHHHcCCHHHHHHHHHCCCCC----------CCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 9999999999999999999999984 55678899999999999999999888765
No 22
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.92 E-value=2.9e-25 Score=188.04 Aligned_cols=192 Identities=18% Similarity=0.161 Sum_probs=152.8
Q ss_pred CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Q 041054 4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSG 83 (298)
Q Consensus 4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g 83 (298)
..++.+|..|+||||+|+..|+.++|++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus 31 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 106 (231)
T 3aji_A 31 SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD----AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG 106 (231)
T ss_dssp GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred hhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCC----CCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCC
Confidence 45788899999999999999999999999999999998877 89999999999999999999999999999999999
Q ss_pred CcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC-CCCCCCCCCCCCCC
Q 041054 84 RIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG-TAYSLPSPSHSDVG 162 (298)
Q Consensus 84 ~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~-~~~~~~~p~~~~~~ 162 (298)
.||||+|+..++.+++++|+++|+++ +..+..+.||||+|+..++.+++++|++. .++..... .
T Consensus 107 ~t~L~~A~~~~~~~~~~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---~-- 171 (231)
T 3aji_A 107 CTPLHYAASKNRHEIAVMLLEGGANP----------DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDT---E-- 171 (231)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT---T--
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCC----------CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCC---C--
Confidence 99999999999999999999999984 45677789999999999999998888764 33221100 0
Q ss_pred CcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCcccccccceeE
Q 041054 163 ADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRSTIAHLV 232 (298)
Q Consensus 163 ~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I~~~~ 232 (298)
+...-.+... .||..+...++..+++.+..+..+ ||++.+....+..|.+++
T Consensus 172 ---------g~t~L~~A~~---------~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL 224 (231)
T 3aji_A 172 ---------GNTPLHLACD---------EERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLA 224 (231)
T ss_dssp ---------SCCHHHHHHH---------TTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHH
T ss_pred ---------CCCHHHHHHH---------CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHH
Confidence 1111111112 277778888888877776555544 777777655555555443
No 23
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.92 E-value=1.3e-25 Score=197.12 Aligned_cols=195 Identities=17% Similarity=0.124 Sum_probs=153.6
Q ss_pred CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Q 041054 4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSG 83 (298)
Q Consensus 4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g 83 (298)
..++.+|..|+||||+|+..|+.++|++|++.|++++..+. .|+||||+|+..|+.++|++|+++|++++.+|..|
T Consensus 50 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g 125 (285)
T 3d9h_A 50 NPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA----DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 125 (285)
T ss_dssp CTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECT----TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTC
T ss_pred CcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC----CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCC
Confidence 34677899999999999999999999999999999998887 89999999999999999999999999999999999
Q ss_pred CcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC-CCCCCCCCCCCCC
Q 041054 84 RIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT-AYSLPSPSHSDVG 162 (298)
Q Consensus 84 ~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~-~~~~~~p~~~~~~ 162 (298)
.||||+|+..++.+++++|+++|+++.. +..+.|||++|+..++.+++++|++.+ ++..... .
T Consensus 126 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-----------~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~---~-- 189 (285)
T 3d9h_A 126 HTPLFNACVSGSWDCVNLLLQHGASVQP-----------ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKIS---H-- 189 (285)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSSC-----------SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBT---T--
T ss_pred CCHHHHHHHcCHHHHHHHHHHCCCCCCC-----------CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC---C--
Confidence 9999999999999999999999998542 234789999999999999888877643 3221000 0
Q ss_pred CcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEEe
Q 041054 163 ADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKI 236 (298)
Q Consensus 163 ~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~~ 236 (298)
+...-.+... .||..+...++..++..+.+....||++.++...+..|+++++...
T Consensus 190 ---------g~t~L~~A~~---------~~~~~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 245 (285)
T 3d9h_A 190 ---------LGTPLYLACE---------NQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFG 245 (285)
T ss_dssp ---------TBCHHHHHHH---------TTCHHHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred ---------CCCHHHHHHH---------cCcHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 0111111111 2777788888877766664333338888888888888888877653
No 24
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.92 E-value=3.8e-25 Score=186.27 Aligned_cols=196 Identities=20% Similarity=0.172 Sum_probs=158.4
Q ss_pred CCCcccC-CCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC-CCcccc
Q 041054 3 ARFVNIR-DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGA-DRLHRD 80 (298)
Q Consensus 3 ~~~vn~~-d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga-d~~~~d 80 (298)
+.+++.. |..|+||||+|+..|+.++|++|+++|++++..+. .|+||||+|+..|+.+++++|++.++ +++..+
T Consensus 14 g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~ 89 (223)
T 2f8y_A 14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN----MGRTPLHAAVSADAQGVFQILIRNRATDLDARM 89 (223)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCC
T ss_pred CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Confidence 4566654 89999999999999999999999999999998877 89999999999999999999999987 899999
Q ss_pred cCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC-CCCCCCCCCCC
Q 041054 81 VSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG-TAYSLPSPSHS 159 (298)
Q Consensus 81 ~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~-~~~~~~~p~~~ 159 (298)
..|.||||+|+..++.+++++|+++|++ ++..+..+.||||+|+..++.+++++|++. +++.....
T Consensus 90 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--- 156 (223)
T 2f8y_A 90 HDGTTPLILAARLAVEGMLEDLINSHAD----------VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN--- 156 (223)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTTCC----------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---
T ss_pred CCCCcHHHHHHHhCcHHHHHHHHHcCCC----------CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC---
Confidence 9999999999999999999999999998 455677899999999999999998888765 33221110
Q ss_pred CCCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCcccccccceeEEEE
Q 041054 160 DVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRSTIAHLVVVK 235 (298)
Q Consensus 160 ~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I~~~~~~~ 235 (298)
. +...-.+... .||..+...++..+++....+..+ +|++.++...+..|.++++..
T Consensus 157 ~-----------g~t~L~~A~~---------~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~ 213 (223)
T 2f8y_A 157 R-----------EETPLFLAAR---------EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY 213 (223)
T ss_dssp T-----------CCCHHHHHHH---------HTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred C-----------CcCHHHHHHH---------cCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHc
Confidence 0 0111111111 277888899988877766555555 888888888888888887654
No 25
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=5.8e-25 Score=168.14 Aligned_cols=124 Identities=38% Similarity=0.525 Sum_probs=116.2
Q ss_pred CCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHH
Q 041054 12 RGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVAL 91 (298)
Q Consensus 12 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~ 91 (298)
+|+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~ 76 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK----NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 76 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCC----CCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Confidence 589999999999999999999999999988877 8999999999999999999999999999999999999999999
Q ss_pred hcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054 92 KHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT 149 (298)
Q Consensus 92 ~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~ 149 (298)
..++.+++++|+++|++ ++..+..|.|||++|+..++.+++++|++.+
T Consensus 77 ~~~~~~~~~~Ll~~g~~----------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 124 (126)
T 1n0r_A 77 RNGHLEVVKLLLEAGAD----------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124 (126)
T ss_dssp HTTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred HcChHHHHHHHHHcCCC----------CcccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence 99999999999999998 4556788999999999999999999887643
No 26
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.92 E-value=1.4e-24 Score=188.00 Aligned_cols=193 Identities=23% Similarity=0.225 Sum_probs=148.2
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV 81 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 81 (298)
.+.++|.+|..|+||||+|+..|+.++|++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++. +.
T Consensus 25 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~ 99 (261)
T 2xai_A 25 QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA----DWHTPLFNACVSGSWDCVNLLLQHGASVQP-ES 99 (261)
T ss_dssp TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-SC
T ss_pred CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CC
Confidence 3678888999999999999999999999999999998888777 789999999999999999999999998875 44
Q ss_pred CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC-CCCCCCCCCCCC
Q 041054 82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG-TAYSLPSPSHSD 160 (298)
Q Consensus 82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~-~~~~~~~p~~~~ 160 (298)
.|.||||+|+..++.+++++|+++|++ ++..+..|.||||+|+..++.+++++|++. +++.. ...
T Consensus 100 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~----~~~ 165 (261)
T 2xai_A 100 DLASPIHEAARRGHVECVNSLIAYGGN----------IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ----GKG 165 (261)
T ss_dssp TTCCHHHHHHHTTCHHHHHHHHHTTCC----------TTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC----CBT
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHcCCC----------CCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC----CCC
Confidence 588999999999999999999999888 455677888999999999999988887764 33321 000
Q ss_pred CCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCcccccccceeEEEE
Q 041054 161 VGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRSTIAHLVVVK 235 (298)
Q Consensus 161 ~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I~~~~~~~ 235 (298)
+...-.+... .||..+...++..+++.+..+..+ ||++.++. +..|.++++..
T Consensus 166 -----------g~t~Lh~A~~---------~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~--~~~~~~~ll~~ 219 (261)
T 2xai_A 166 -----------QDSPLHAVAR---------TASEELACLLMDFGADTQAKNAEGKRPVELVPP--ESPLAQLFLER 219 (261)
T ss_dssp -----------TBCHHHHHHH---------HTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT--TCTHHHHHHHC
T ss_pred -----------CCChHHHHHH---------cCCHHHHHHHHHcCCCCCCcCCCCCChhhhccc--cccHHHHHHhc
Confidence 0111111111 277788999999988887766666 99999884 34466655543
No 27
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.92 E-value=7.9e-25 Score=192.21 Aligned_cols=193 Identities=22% Similarity=0.207 Sum_probs=158.7
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV 81 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 81 (298)
.+.++|.+|..|+||||+|+..|+.++|++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++..+
T Consensus 81 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~- 155 (285)
T 3d9h_A 81 QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA----DWHTPLFNACVSGSWDCVNLLLQHGASVQPES- 155 (285)
T ss_dssp TTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCT----TCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-
T ss_pred CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-
Confidence 4678999999999999999999999999999999999998887 89999999999999999999999999998654
Q ss_pred CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC-CCCCCCCCCCC
Q 041054 82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT-AYSLPSPSHSD 160 (298)
Q Consensus 82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~-~~~~~~p~~~~ 160 (298)
.|.||||+|+..|+.+++++|+++|++ ++..+..|.|||++|+..++.+++++|++.+ ++.. ...
T Consensus 156 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~----~~~ 221 (285)
T 3d9h_A 156 DLASPIHEAARRGHVECVNSLIAYGGN----------IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ----GKG 221 (285)
T ss_dssp TTSCHHHHHHHHTCHHHHHHHHHTTCC----------TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC----CBT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCC----------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC----CCC
Confidence 599999999999999999999999998 4667888999999999999999999887753 3220 000
Q ss_pred CCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCcccccccceeEEEE
Q 041054 161 VGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRSTIAHLVVVK 235 (298)
Q Consensus 161 ~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I~~~~~~~ 235 (298)
+...-.+... .||..+...++..+++.+..+..+ ||++.++ .+..|.++++..
T Consensus 222 -----------g~t~L~~A~~---------~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~ 275 (285)
T 3d9h_A 222 -----------QDSPLHAVVR---------TASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLER 275 (285)
T ss_dssp -----------TBCHHHHHHH---------TTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHH
T ss_pred -----------CCCHHHHHHH---------cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHh
Confidence 0111111111 378888999999988877666666 9999998 346677766654
No 28
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=1.2e-25 Score=179.76 Aligned_cols=130 Identities=21% Similarity=0.144 Sum_probs=116.5
Q ss_pred CcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCC
Q 041054 5 FVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGR 84 (298)
Q Consensus 5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~ 84 (298)
.++..+..|.||||+|+..|+.++|++|+++|++++..+. .|+||||+|+ .|+.+++++|+++|++++.+|..|.
T Consensus 4 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ 78 (156)
T 1bi7_B 4 AAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNS----YGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATL 78 (156)
T ss_dssp ------CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCS----SSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTC
T ss_pred CccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----CCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCC
Confidence 4567789999999999999999999999999999998887 8999999985 9999999999999999999999999
Q ss_pred c-HHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054 85 I-PYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT 149 (298)
Q Consensus 85 t-pL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~ 149 (298)
| |||+|+..++.+++++|+++|+++ +..+..|.|||++|+..++.+++++|++.+
T Consensus 79 ttpL~~A~~~~~~~~v~~Ll~~ga~~----------~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g 134 (156)
T 1bi7_B 79 TRPVHDAAREGFLDTLVVLHRAGARL----------DVRDAWGRLPVDLAEELGHRDVARYLRAAA 134 (156)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCS----------SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC
T ss_pred cHHHHHHHHCCCHHHHHHHHHcCCCC----------cccCCCCCCHHHHHHHhCHHHHHHHHHHcC
Confidence 9 999999999999999999999984 556788999999999999999999887653
No 29
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.91 E-value=1.1e-25 Score=208.60 Aligned_cols=134 Identities=26% Similarity=0.229 Sum_probs=112.5
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV 81 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 81 (298)
+|+++|..|..|+||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.++|++|++.|++++.+|.
T Consensus 3 ~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~----~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~ 78 (437)
T 1n11_A 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNV----KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAK 78 (437)
T ss_dssp ------------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSS----CCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCT
T ss_pred CCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC
Confidence 5789999999999999999999999999999999999998877 799999999999999999999999999999999
Q ss_pred CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054 82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT 149 (298)
Q Consensus 82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~ 149 (298)
.|.||||+|+..|+.+++++|+++|+++ +..+..+.|||++|+..++.++++.|++..
T Consensus 79 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~----------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 136 (437)
T 1n11_A 79 DDQTPLHCAARIGHTNMVKLLLENNANP----------NLATTAGHTPLHIAAREGHVETVLALLEKE 136 (437)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHHTCCT----------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCCCHHHHHHHCCCHHHHHHHHhCCCCC----------CCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Confidence 9999999999999999999999999985 445667788999999999888888777643
No 30
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.91 E-value=1.3e-25 Score=193.79 Aligned_cols=144 Identities=24% Similarity=0.171 Sum_probs=122.7
Q ss_pred CcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCC----------CCCCCCChHHHHHHHcCCHHHHHHHHH---
Q 041054 5 FVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTG----------GYGCPGSTPLHLAARGGSIDCIRELLA--- 71 (298)
Q Consensus 5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~----------~~~~~g~TpLh~A~~~g~~~~v~~Ll~--- 71 (298)
.++.+|..|+||||+|+..|+.++|++||++|++++..+. ..+..|+||||+|+..|+.++|++|++
T Consensus 85 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 164 (260)
T 3jxi_A 85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH 164 (260)
T ss_dssp CBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred cccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 4556677999999999999999999999999999998872 001269999999999999999999999
Q ss_pred cCCCCcccccCCCcHHHHHHhcCc---------HHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHH
Q 041054 72 WGADRLHRDVSGRIPYAVALKHKH---------GACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKERE 142 (298)
Q Consensus 72 ~gad~~~~d~~g~tpL~~A~~~~~---------~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~ 142 (298)
+|++++.+|..|+||||+|+..++ .+++++|+++|+++... ....+..+..|.||||+|+..++.+++
T Consensus 165 ~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~---~~~~~~~d~~g~tpL~~A~~~g~~~~v 241 (260)
T 3jxi_A 165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPD---TNLEALLNNDGLSPLMMAAKTGKIGIF 241 (260)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTT---CCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred cCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccc---cchhhcccCCCCCHHHHHHHcCCHHHH
Confidence 999999999999999999998877 69999999999973211 011256788999999999999999999
Q ss_pred HHHhcCCCC
Q 041054 143 KNILKGTAY 151 (298)
Q Consensus 143 ~~ll~~~~~ 151 (298)
++|++.+..
T Consensus 242 ~~Ll~~g~~ 250 (260)
T 3jxi_A 242 QHIIRREIA 250 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhCCC
Confidence 988776543
No 31
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.91 E-value=1.2e-24 Score=190.36 Aligned_cols=135 Identities=31% Similarity=0.358 Sum_probs=100.4
Q ss_pred CcccCCCCCCcHHHHHHHcCChHHHHHHHhCCC-CccccCCC----------------------------------CCCC
Q 041054 5 FVNIRDGRGATPLHLAARQRRPECVHILLDSGA-LVCASTGG----------------------------------YGCP 49 (298)
Q Consensus 5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga-~~~~~~~~----------------------------------~~~~ 49 (298)
.+|.+|..|+||||+|+..|+.++|++|++.|+ +++..+.. .+..
T Consensus 103 ~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~ 182 (276)
T 4hbd_A 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQA 182 (276)
T ss_dssp HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTT
T ss_pred cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCC
Confidence 488999999999999999999999999999998 77765541 1234
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhcc-CCCCCCCCCCChhhhhHhhHHHHH
Q 041054 50 GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNP-ASAEPLVWPSPLKFISELNQEAKA 128 (298)
Q Consensus 50 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~t 128 (298)
|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|++ .|++ ++..|..|.|
T Consensus 183 g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad----------~~~~d~~g~T 252 (276)
T 4hbd_A 183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD----------ISLTDRDGST 252 (276)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCC----------TTCCCTTSCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC----------CcCcCCCCCC
Confidence 6677777777777777777777777777777777777777777777777777776 6666 3445666777
Q ss_pred HHHHHHHhhhHHHHHHHhcCC
Q 041054 129 LLENALMEANKEREKNILKGT 149 (298)
Q Consensus 129 ~L~~A~~~~~~~~~~~ll~~~ 149 (298)
||++|+..++.+++++|++..
T Consensus 253 pL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 253 ALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHhcc
Confidence 777777777777777666543
No 32
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.91 E-value=9.3e-25 Score=188.13 Aligned_cols=133 Identities=28% Similarity=0.230 Sum_probs=107.7
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCC-CccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGA-LVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD 80 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga-~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d 80 (298)
.|++++.+|..|+||||+|+..|+.+++++|+++++ +++..+. .|.||||+|+..|+.+++++|++.|++++.+|
T Consensus 79 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d 154 (253)
T 1yyh_A 79 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH----DGTTPLILAARLAVEGMLEDLINSHADVNAVD 154 (253)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCT----TCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBC
T ss_pred cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC----CCCcHHHHHHHcChHHHHHHHHHcCCCCCCcC
Confidence 467788888888888888888888888888888876 7776666 68888888888888888888888888888888
Q ss_pred cCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054 81 VSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG 148 (298)
Q Consensus 81 ~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~ 148 (298)
..|.||||+|+..++.+++++|+++|++ ++..+..|.|||++|+..++.+++++|++.
T Consensus 155 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 212 (253)
T 1yyh_A 155 DLGKSALHWAAAVNNVDAAVVLLKNGAN----------KDMQNNREETPLFLAAREGSYETAKVLLDH 212 (253)
T ss_dssp TTSCBHHHHHHHHTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC----------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 8888888888888888888888888887 345567778888888888888877777664
No 33
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.91 E-value=1.9e-25 Score=193.49 Aligned_cols=191 Identities=17% Similarity=0.156 Sum_probs=154.7
Q ss_pred CCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHH
Q 041054 12 RGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVAL 91 (298)
Q Consensus 12 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~ 91 (298)
+|+||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 77 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA----DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNAC 77 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT----TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 689999999999999999999999999998887 8999999999999999999999999999999999999999999
Q ss_pred hcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC-CCCCCCCCCCCCCCccccccc
Q 041054 92 KHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT-AYSLPSPSHSDVGADDNISEA 170 (298)
Q Consensus 92 ~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~-~~~~~~p~~~~~~~~~~~~~~ 170 (298)
..|+.+++++|+++|+++.. +.++.|||++|+..++.+++++|++.+ ++..... .
T Consensus 78 ~~~~~~~v~~Ll~~g~~~~~-----------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---~---------- 133 (261)
T 2xai_A 78 VSGSWDCVNLLLQHGASVQP-----------ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKIS---H---------- 133 (261)
T ss_dssp HHTCHHHHHHHHHTTCCSSC-----------SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBT---T----------
T ss_pred HcCCHHHHHHHHHCCCCCCC-----------CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCC---C----------
Confidence 99999999999999998542 234889999999999999999887653 3221100 0
Q ss_pred CCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEEeecCC
Q 041054 171 SDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQE 240 (298)
Q Consensus 171 ~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~~~~~~ 240 (298)
+...-.+... .||..+...++..++..+.+....||+|.++...+..|+++++......+
T Consensus 134 -g~t~L~~A~~---------~~~~~~v~~Ll~~g~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~ 193 (261)
T 2xai_A 134 -LGTPLYLACE---------NQQRACVKKLLESGADVNQGKGQDSPLHAVARTASEELACLLMDFGADTQ 193 (261)
T ss_dssp -TBCHHHHHHH---------TTCHHHHHHHHHHTCCTTCCBTTBCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred -CCCHHHHHHH---------hCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 0011011111 27888999999998887754333499999999999999999987644433
No 34
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.91 E-value=1.2e-24 Score=184.41 Aligned_cols=137 Identities=24% Similarity=0.272 Sum_probs=121.0
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccC-CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCAST-GGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV 81 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~-~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 81 (298)
+.++|.+|..|+||||+|+..|+.++|++|+++|+++.... ...|..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus 27 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 106 (232)
T 2rfa_A 27 GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARAT 106 (232)
T ss_dssp CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCC
T ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccC
Confidence 78999999999999999999999999999999999863221 22334899999999999999999999999999998876
Q ss_pred -------------CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHH----HH
Q 041054 82 -------------SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKERE----KN 144 (298)
Q Consensus 82 -------------~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~----~~ 144 (298)
.|.||||+|+..|+.+++++|+++|++ ++..|..|.||||+|+..++.+++ ++
T Consensus 107 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----------~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~ 176 (232)
T 2rfa_A 107 GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD----------IRAQDSLGNTVLHILILQPNKTFACQMYNL 176 (232)
T ss_dssp SGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHTCSCHHHHHHHHHH
T ss_pred CcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC----------CCCCCCCCCCHHHHHHHcCChHHHHHHHHH
Confidence 799999999999999999999999998 466788899999999999998876 66
Q ss_pred HhcCC
Q 041054 145 ILKGT 149 (298)
Q Consensus 145 ll~~~ 149 (298)
|++.+
T Consensus 177 Ll~~g 181 (232)
T 2rfa_A 177 LLSYD 181 (232)
T ss_dssp HHHTT
T ss_pred HHhcC
Confidence 66543
No 35
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.91 E-value=5.3e-25 Score=197.01 Aligned_cols=210 Identities=21% Similarity=0.163 Sum_probs=163.3
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV 81 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 81 (298)
.+.+++.+|..|+||||+|+..|+.++|++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++..|.
T Consensus 47 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~ 122 (351)
T 3utm_A 47 LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDK----GGLVPLHNACSYGHYEVTELLLKHGACVNAMDL 122 (351)
T ss_dssp TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC----CCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
Confidence 4678899999999999999999999999999999999998887 899999999999999999999999999999999
Q ss_pred CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChh----hh--------------------------------------
Q 041054 82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLK----FI-------------------------------------- 119 (298)
Q Consensus 82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~----~~-------------------------------------- 119 (298)
.|.||||+|+..++.+++++|+++|+++........ ..
T Consensus 123 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 202 (351)
T 3utm_A 123 WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEI 202 (351)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhc
Confidence 999999999999999999999999999776432111 00
Q ss_pred --hHhhHHHHHHHHHHHHh---hhHHHHHHHhcC-CCCCCCCCCCCCCCCcccccccCCCcccccccccccceEEeCCCc
Q 041054 120 --SELNQEAKALLENALME---ANKEREKNILKG-TAYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGH 193 (298)
Q Consensus 120 --~~~~~~~~t~L~~A~~~---~~~~~~~~ll~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH 193 (298)
...+..+.|+||+|+.. +..+++++|++. .++..... . +...-.+.. -.||
T Consensus 203 ~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~---~-----------g~t~L~~A~---------~~g~ 259 (351)
T 3utm_A 203 INFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNK---D-----------FMTPLHVAA---------ERAH 259 (351)
T ss_dssp TTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCT---T-----------CCCHHHHHH---------HTTC
T ss_pred ccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCC---C-----------CCCHHHHHH---------HcCC
Confidence 01134456888888887 556777776654 33321110 0 001111111 1378
Q ss_pred hhHHHHHHHHhhcCCCCCCCC-CCCCCCCcccccccceeEEEEeec
Q 041054 194 QMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRSTIAHLVVVKIEN 238 (298)
Q Consensus 194 ~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I~~~~~~~~~~ 238 (298)
..+...++..++..+..+..+ ||++.++..++..|+++++.....
T Consensus 260 ~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad 305 (351)
T 3utm_A 260 NDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD 305 (351)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 888888988888777666665 999999999999999998876443
No 36
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.91 E-value=3.5e-25 Score=188.19 Aligned_cols=195 Identities=17% Similarity=0.134 Sum_probs=157.0
Q ss_pred CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Q 041054 4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSG 83 (298)
Q Consensus 4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g 83 (298)
.+++.+|..|+||||+|+..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|++.|++++.++..|
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 77 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSE----DQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG 77 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTS
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCC----CCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCC
Confidence 36889999999999999999999999999999999998877 79999999999999999999999999999999999
Q ss_pred CcHHHHHHhcCcHHHHHHhccCC-CCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC-CCCCCCCCCCCC
Q 041054 84 RIPYAVALKHKHGACAALLNPAS-AEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT-AYSLPSPSHSDV 161 (298)
Q Consensus 84 ~tpL~~A~~~~~~~~~~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~-~~~~~~p~~~~~ 161 (298)
.||||+|+..++.+++++|++++ .+ ++..+..+.|||++|+..++.+++++|++.+ ++..... .
T Consensus 78 ~t~L~~A~~~~~~~~~~~Ll~~~~~~----------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~---~- 143 (237)
T 3b7b_A 78 STCLHLAAKKGHYEVVQYLLSNGQMD----------VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDN---E- 143 (237)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTTTCCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---T-
T ss_pred CcHHHHHHHcCCHHHHHHHHhCCCCC----------cccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCC---C-
Confidence 99999999999999999999998 55 3556677899999999999999888887643 3221110 0
Q ss_pred CCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCcccccccceeEEEE
Q 041054 162 GADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRSTIAHLVVVK 235 (298)
Q Consensus 162 ~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I~~~~~~~ 235 (298)
+...-.++.. .|+..+...++..++..+..+..+ ||++.++...+..|.++++..
T Consensus 144 ----------g~t~L~~A~~---------~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 199 (237)
T 3b7b_A 144 ----------ENICLHWAAF---------SGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR 199 (237)
T ss_dssp ----------SCCHHHHHHH---------HCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred ----------CCCHHHHHHH---------CCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHc
Confidence 0011011111 266677788877776666555555 888888888888888887754
No 37
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=5.9e-26 Score=187.42 Aligned_cols=129 Identities=14% Similarity=0.032 Sum_probs=116.1
Q ss_pred CcccCC-CCCCcHHHHHHHcCCh----HHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCC------HHHHHHHHHcC
Q 041054 5 FVNIRD-GRGATPLHLAARQRRP----ECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGS------IDCIRELLAWG 73 (298)
Q Consensus 5 ~vn~~d-~~G~TpLh~Aa~~g~~----~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~------~~~v~~Ll~~g 73 (298)
+++.++ ..|+||||+|+..++. +++++||++|+++|.++. .|+||||+|+..++ .+++++|+++|
T Consensus 29 ~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~----~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~G 104 (186)
T 3t8k_A 29 GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTK----EGTTLFFPLFQGGGNDITGTTELCKIFLEKG 104 (186)
T ss_dssp SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCT----TCCCTHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCC----CCCcHHHHHHHcCCcchhhHHHHHHHHHHCC
Confidence 456666 7799999999999975 599999999999999987 89999999999887 68899999999
Q ss_pred CCCcccccCCC-cHHHHHHhcC-----cHHHHHHhcc-CCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHh
Q 041054 74 ADRLHRDVSGR-IPYAVALKHK-----HGACAALLNP-ASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNIL 146 (298)
Q Consensus 74 ad~~~~d~~g~-tpL~~A~~~~-----~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll 146 (298)
++++.+|..|. ||||+|+..+ +.+++++|++ +|++ ++.+|..|+|||++|...++.+++++|+
T Consensus 105 adin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad----------~~~~d~~G~TpL~~A~~~~~~~~v~~L~ 174 (186)
T 3t8k_A 105 ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ----------LLIKDKWGLTALEFVKRCQKPIALKMME 174 (186)
T ss_dssp CCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC----------TTCCCTTSCCHHHHHHTTTCHHHHHHHH
T ss_pred CCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC----------CcccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 99999999999 9999999954 4569999999 9999 5778899999999999999999988876
Q ss_pred c
Q 041054 147 K 147 (298)
Q Consensus 147 ~ 147 (298)
.
T Consensus 175 ~ 175 (186)
T 3t8k_A 175 D 175 (186)
T ss_dssp H
T ss_pred H
Confidence 5
No 38
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.91 E-value=1.3e-24 Score=185.07 Aligned_cols=130 Identities=25% Similarity=0.280 Sum_probs=72.5
Q ss_pred CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC------Cc
Q 041054 4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGAD------RL 77 (298)
Q Consensus 4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad------~~ 77 (298)
.++|.+|..|+||||+|+..|+.++|++|+++|++++..+. .|+||||+|+..|+.+++++|++.|++ ++
T Consensus 36 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~ 111 (236)
T 1ikn_D 36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF----RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILK 111 (236)
T ss_dssp CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCT----TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGG
T ss_pred HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----CCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhh
Confidence 35566666666666666666666666666666666655554 455555555555555555555555544 34
Q ss_pred ccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhH-HHHHHHHHHHHhhhHHHHHHHhc
Q 041054 78 HRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQ-EAKALLENALMEANKEREKNILK 147 (298)
Q Consensus 78 ~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~-~~~t~L~~A~~~~~~~~~~~ll~ 147 (298)
..+..|.||||+|+..++.+++++|+++|+++ +..+. .|.||||+|+..++.+++++|++
T Consensus 112 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 172 (236)
T 1ikn_D 112 ATNYNGHTCLHLASIHGYLGIVELLVSLGADV----------NAQEPCNGRTALHLAVDLQNPDLVSLLLK 172 (236)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT----------TCCCTTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 44455555555555555555555555555552 22333 45555555555555555554444
No 39
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.91 E-value=3.8e-25 Score=188.14 Aligned_cols=197 Identities=20% Similarity=0.158 Sum_probs=161.5
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC----CCc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGA----DRL 77 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga----d~~ 77 (298)
.+.++|.+|..|+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.++ +++
T Consensus 35 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~ 110 (241)
T 1k1a_A 35 GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR----HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE 110 (241)
T ss_dssp TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTT
T ss_pred cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccc
Confidence 3678999999999999999999999999999999999998877 89999999999999999999999998 899
Q ss_pred ccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhh-HHHHHHHHHHHHhhhHHHHHHHhcC-CCCCCCC
Q 041054 78 HRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELN-QEAKALLENALMEANKEREKNILKG-TAYSLPS 155 (298)
Q Consensus 78 ~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~-~~~~t~L~~A~~~~~~~~~~~ll~~-~~~~~~~ 155 (298)
..|..|.||||+|+..++.+++++|+++|+++ +..+ ..+.||||+|+..++.+++++|++. +++....
T Consensus 111 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 180 (241)
T 1k1a_A 111 ARNYDGLTALHVAVNTECQETVQLLLERGADI----------DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQM 180 (241)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT----------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBC
T ss_pred ccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc----------ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 99999999999999999999999999999984 4445 6799999999999999999988775 3322110
Q ss_pred CCCCCCCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCcccccccceeEEE
Q 041054 156 PSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRSTIAHLVVV 234 (298)
Q Consensus 156 p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I~~~~~~ 234 (298)
. .+...-.+... .||..+...++..+++.+..+..+ ||++.+.-..+..|.+.+..
T Consensus 181 ~--------------~g~t~L~~A~~---------~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~ 237 (241)
T 1k1a_A 181 Y--------------SGSSALHSASG---------RGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKAT 237 (241)
T ss_dssp T--------------TSCBHHHHHHH---------HTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC---
T ss_pred C--------------CCCCHHHHHHH---------cCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhcc
Confidence 0 01111111112 278889999999988877666666 99999999999888888776
Q ss_pred E
Q 041054 235 K 235 (298)
Q Consensus 235 ~ 235 (298)
.
T Consensus 238 ~ 238 (241)
T 1k1a_A 238 R 238 (241)
T ss_dssp -
T ss_pred C
Confidence 4
No 40
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.91 E-value=4.3e-25 Score=169.32 Aligned_cols=118 Identities=23% Similarity=0.216 Sum_probs=105.8
Q ss_pred CCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHH
Q 041054 9 RDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYA 88 (298)
Q Consensus 9 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~ 88 (298)
.+..|.||||+|+..|+.+++++|++.|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus 3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~ 78 (123)
T 3aaa_C 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLE----GGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLL 78 (123)
T ss_dssp ----CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCT----TSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred cccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCC----CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence 356789999999999999999999999999998887 8999999999999999999999999999999999999999
Q ss_pred HHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHH
Q 041054 89 VALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKE 140 (298)
Q Consensus 89 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~ 140 (298)
+|+..++.+++++|+++|++ ++..+.+|.|||++|...+..+
T Consensus 79 ~A~~~~~~~~v~~Ll~~ga~----------~~~~~~~g~t~l~~A~~~~~~~ 120 (123)
T 3aaa_C 79 SAVYEGHVSCVKLLLSKGAD----------KTVKGPDGLTAFEATDNQAIKA 120 (123)
T ss_dssp HHHHHTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHCCCHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCC----------CCCcCCCCCCHHHHhCCHHHHH
Confidence 99999999999999999998 4567888999999995444443
No 41
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.91 E-value=4.6e-24 Score=155.56 Aligned_cols=93 Identities=45% Similarity=0.621 Sum_probs=88.7
Q ss_pred CCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHH
Q 041054 12 RGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVAL 91 (298)
Q Consensus 12 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~ 91 (298)
+|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~ 76 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK----NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 76 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence 589999999999999999999999999999887 8999999999999999999999999999999999999999999
Q ss_pred hcCcHHHHHHhccCCCC
Q 041054 92 KHKHGACAALLNPASAE 108 (298)
Q Consensus 92 ~~~~~~~~~~Ll~~ga~ 108 (298)
..++.+++++|+++|++
T Consensus 77 ~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 77 RNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HTTCHHHHHHHHHTTCC
T ss_pred HcCCHHHHHHHHHcCCC
Confidence 99999999999999874
No 42
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.91 E-value=3.9e-24 Score=180.02 Aligned_cols=133 Identities=28% Similarity=0.233 Sum_probs=102.6
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCC-CccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGA-LVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD 80 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga-~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d 80 (298)
.+.+++.+|..|+||||+|+..|+.+++++|+++++ +++..+. .|.||||+|+..++.+++++|+++|++++.+|
T Consensus 47 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~ 122 (223)
T 2f8y_A 47 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH----DGTTPLILAARLAVEGMLEDLINSHADVNAVD 122 (223)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCT----TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBC
T ss_pred cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC----CCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcC
Confidence 356778888888888888888888888888888776 6666655 67888888888888888888888888888888
Q ss_pred cCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054 81 VSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG 148 (298)
Q Consensus 81 ~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~ 148 (298)
..|.||||+|+..++.+++++|+++|+++ +..+..|.|||++|+..++.+++++|++.
T Consensus 123 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 180 (223)
T 2f8y_A 123 DLGKSALHWAAAVNNVDAAVVLLKNGANK----------DMQNNREETPLFLAAREGSYETAKVLLDH 180 (223)
T ss_dssp TTSCBHHHHHHHTTCHHHHHHHHHTTCCT----------TCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCC----------CCcCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence 88888888888888888888888887773 44566677777777777777777766554
No 43
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.91 E-value=1.2e-24 Score=187.38 Aligned_cols=140 Identities=24% Similarity=0.181 Sum_probs=120.3
Q ss_pred cCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCC---------CCCCCChHHHHHHHcCCHHHHHHHHH---cCCC
Q 041054 8 IRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGG---------YGCPGSTPLHLAARGGSIDCIRELLA---WGAD 75 (298)
Q Consensus 8 ~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~---------~~~~g~TpLh~A~~~g~~~~v~~Ll~---~gad 75 (298)
.+|..|+||||+|+..|+.++|++|+++|++++..+.. .|..|.||||+|+..|+.++|++|++ +|++
T Consensus 85 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~ 164 (256)
T 2etb_A 85 DEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS 164 (256)
T ss_dssp STTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC
T ss_pred cccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC
Confidence 35578999999999999999999999999999988762 11129999999999999999999999 9999
Q ss_pred CcccccCCCcHHHHHHh--cCcHH-------HHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHh
Q 041054 76 RLHRDVSGRIPYAVALK--HKHGA-------CAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNIL 146 (298)
Q Consensus 76 ~~~~d~~g~tpL~~A~~--~~~~~-------~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll 146 (298)
++.+|..|+||||+|+. .++.+ ++++|+++|+++... ....+..|..|.|||++|+..++.+++++|+
T Consensus 165 ~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~---~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll 241 (256)
T 2etb_A 165 LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPT---VQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241 (256)
T ss_dssp TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTT---CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccc---cccccccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999 78888 999999999983110 0111667889999999999999999999888
Q ss_pred cCCC
Q 041054 147 KGTA 150 (298)
Q Consensus 147 ~~~~ 150 (298)
+.+.
T Consensus 242 ~~g~ 245 (256)
T 2etb_A 242 QREF 245 (256)
T ss_dssp HHHH
T ss_pred hCCC
Confidence 7543
No 44
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.91 E-value=3.2e-24 Score=181.55 Aligned_cols=134 Identities=28% Similarity=0.231 Sum_probs=125.4
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV 81 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 81 (298)
.+.+++.+|..|+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..++.+++++|+++|++++.+|.
T Consensus 62 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~ 137 (231)
T 3aji_A 62 LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQ----NGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137 (231)
T ss_dssp TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred hCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence 4678999999999999999999999999999999999998877 899999999999999999999999999999999
Q ss_pred CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054 82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT 149 (298)
Q Consensus 82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~ 149 (298)
.|.||||+|+..++.+++++|+++|+++ +..+..|.||||+|+..++.+++++|++.+
T Consensus 138 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 195 (231)
T 3aji_A 138 YDATAMHRAAAKGNLKMVHILLFYKAST----------NIQDTEGNTPLHLACDEERVEEAKFLVTQG 195 (231)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCCS----------CCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCc----------cccCCCCCCHHHHHHHCCCHHHHHHHHHCC
Confidence 9999999999999999999999999984 556778999999999999999988887653
No 45
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.91 E-value=1.8e-24 Score=188.03 Aligned_cols=90 Identities=26% Similarity=0.304 Sum_probs=67.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC-CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHH
Q 041054 49 PGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS-GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAK 127 (298)
Q Consensus 49 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~-g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 127 (298)
.|.||||+|+..|+.++|++|+++|++++.++.. |+||||+|+..++.+++++|+++|++ ++.++..|.
T Consensus 157 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad----------~~~~d~~g~ 226 (282)
T 1oy3_D 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD----------PTARMYGGR 226 (282)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSC
T ss_pred CCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC----------CcccccCCC
Confidence 5777777777777777777777777777777644 77777777777777777777777777 345667778
Q ss_pred HHHHHHHHhhhHHHHHHHhcC
Q 041054 128 ALLENALMEANKEREKNILKG 148 (298)
Q Consensus 128 t~L~~A~~~~~~~~~~~ll~~ 148 (298)
|||++|+..++.+++++|++.
T Consensus 227 tpL~~A~~~~~~~~v~~Ll~~ 247 (282)
T 1oy3_D 227 TPLGSALLRPNPILARLLRAH 247 (282)
T ss_dssp CHHHHHHTSSCHHHHHHHHHT
T ss_pred CHHHHHHHcCCcHHHHHHHHc
Confidence 888888888888877776653
No 46
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.91 E-value=4.6e-24 Score=176.74 Aligned_cols=137 Identities=21% Similarity=0.207 Sum_probs=117.6
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHH-HcCCCCccccc
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELL-AWGADRLHRDV 81 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll-~~gad~~~~d~ 81 (298)
+.++|.+|..|+||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|+ ..+++++..|.
T Consensus 29 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~ 104 (201)
T 3hra_A 29 TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNS----ISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNR 104 (201)
T ss_dssp TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCT
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHhccCcccccccC
Confidence 358899999999999999999999999999999999998877 7999999999999999999999 55779999999
Q ss_pred CCCcHHHHHHhcCcHHHHHHhccCC-CCCCCCCCChhhhhHhhHHHHHHHHHHHHhhh-----HHHHHHHh-cCCCCCC
Q 041054 82 SGRIPYAVALKHKHGACAALLNPAS-AEPLVWPSPLKFISELNQEAKALLENALMEAN-----KEREKNIL-KGTAYSL 153 (298)
Q Consensus 82 ~g~tpL~~A~~~~~~~~~~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~-----~~~~~~ll-~~~~~~~ 153 (298)
.|.||||+|+..++.+++++|+++| ++ ++..+..|.||||+|+..+. .+++++|+ .|+++..
T Consensus 105 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 105 YGGNALIPAAEKGHIDNVKLLLEDGRED----------IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp TSCCSHHHHHHTTCHHHHHHHHHHCCCC----------TTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCC----------cCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc
Confidence 9999999999999999999999998 66 45567788889999887776 77776665 4677654
No 47
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.91 E-value=4.4e-24 Score=180.94 Aligned_cols=140 Identities=24% Similarity=0.227 Sum_probs=123.1
Q ss_pred ccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCC---------CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCc
Q 041054 7 NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGG---------YGCPGSTPLHLAARGGSIDCIRELLAWGADRL 77 (298)
Q Consensus 7 n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~---------~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~ 77 (298)
+.+|..|+||||+|+..|+.+++++|+++|++++..+.. .|..|.||||+|+..|+.+++++|+++|++++
T Consensus 69 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 148 (232)
T 2rfa_A 69 TSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR 148 (232)
T ss_dssp CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred cccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 678889999999999999999999999999999886541 13369999999999999999999999999999
Q ss_pred ccccCCCcHHHHHHhcCcHHHH----HHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCC
Q 041054 78 HRDVSGRIPYAVALKHKHGACA----ALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTA 150 (298)
Q Consensus 78 ~~d~~g~tpL~~A~~~~~~~~~----~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~ 150 (298)
.+|..|+||||+|+..++.+++ ++|+++|+++... ...+..+..|.|||++|+..++.+++++|++.+.
T Consensus 149 ~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~----~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 149 AQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLK----SLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp CCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSC----CGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhh----hhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence 9999999999999999999988 9999999975321 1124678899999999999999999998877543
No 48
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.91 E-value=5e-24 Score=187.30 Aligned_cols=132 Identities=23% Similarity=0.241 Sum_probs=109.0
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc-
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV- 81 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~- 81 (298)
|.++|.+|..|+||||+|+..|+.++|++|+++|++++..+. .|+||||+|+..|+.++|++|+++|++++..|.
T Consensus 63 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~----~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~ 138 (299)
T 1s70_B 63 GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN----EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSE 138 (299)
T ss_dssp CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC
Confidence 577888888999999999999999999999999988888776 788999999999999999999999888876653
Q ss_pred -----------------------------------------------------------CCCcHHHHHHhcCcHHHHHHh
Q 041054 82 -----------------------------------------------------------SGRIPYAVALKHKHGACAALL 102 (298)
Q Consensus 82 -----------------------------------------------------------~g~tpL~~A~~~~~~~~~~~L 102 (298)
.|.||||+|+..|+.+++++|
T Consensus 139 g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L 218 (299)
T 1s70_B 139 GDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218 (299)
T ss_dssp SCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHH
T ss_pred CCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHH
Confidence 356777778888888888888
Q ss_pred ccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054 103 NPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG 148 (298)
Q Consensus 103 l~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~ 148 (298)
+++|++ ++..|..|.||||+|+..++.+++++|++.
T Consensus 219 l~~g~d----------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ 254 (299)
T 1s70_B 219 IQARYD----------VNIKDYDGWTPLHAAAHWGKEEACRILVEN 254 (299)
T ss_dssp HTTTCC----------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHcCCC----------CCCcCCCCCcHHHHHHhcCCHHHHHHHHHc
Confidence 888887 355677788888888888888888777664
No 49
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.90 E-value=2.1e-24 Score=183.63 Aligned_cols=135 Identities=23% Similarity=0.265 Sum_probs=70.9
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCcccc--CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCAS--TGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD 80 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~--~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d 80 (298)
|++++.+|..|+||||+|+..|+.+++++|+++|++++.. ....+..|.||||+|+..|+.+++++|+++|++++.++
T Consensus 68 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 147 (236)
T 1ikn_D 68 GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE 147 (236)
T ss_dssp CCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 4455555555555555555555555555555555432110 01111245555555555555555555555555555555
Q ss_pred c-CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc
Q 041054 81 V-SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK 147 (298)
Q Consensus 81 ~-~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~ 147 (298)
. .|.||||+|+..++.+++++|+++|++ ++..+..|.|||++|+..++.+++++|++
T Consensus 148 ~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~----------~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~ 205 (236)
T 1ikn_D 148 PCNGRTALHLAVDLQNPDLVSLLLKCGAD----------VNRVTYQGYSPYQLTWGRPSTRIQQQLGQ 205 (236)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHTTTCC----------SCCCCTTCCCGGGGCTTSSCHHHHHHHHT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------CCcccCCCCCHHHHHHccCchHHHHHHHH
Confidence 4 555555555555555555555555555 23344555555555555555555555444
No 50
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.90 E-value=6.8e-24 Score=180.21 Aligned_cols=188 Identities=21% Similarity=0.171 Sum_probs=153.5
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCcccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWG-ADRLHRD 80 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d 80 (298)
.|.+++..|..|+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.| ++++..|
T Consensus 33 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~ 108 (237)
T 3b7b_A 33 AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA----EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD 108 (237)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCT----TSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCC
T ss_pred cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCC----CCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCC
Confidence 4678999999999999999999999999999999999998877 8999999999999999999999998 8999999
Q ss_pred cCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC-CCCCCCCCCC
Q 041054 81 VSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT-AYSLPSPSHS 159 (298)
Q Consensus 81 ~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~-~~~~~~p~~~ 159 (298)
..|.||||+|+..++.+++++|+++|+++ +..+..+.||||+|+..++.+++++|++.+ ++.... .
T Consensus 109 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~---~ 175 (237)
T 3b7b_A 109 DGGWTPMIWATEYKHVDLVKLLLSKGSDI----------NIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN---I 175 (237)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCC---T
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCCC----------CccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcC---C
Confidence 99999999999999999999999999984 556778899999999999999999887653 322110 0
Q ss_pred CCCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCccccc
Q 041054 160 DVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRS 226 (298)
Q Consensus 160 ~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~ 226 (298)
. +...-.++.. .|+..+...++..++.....+..+ ||++.++...+.
T Consensus 176 ~-----------g~t~L~~A~~---------~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 176 H-----------GDSPLHIAAR---------ENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV 223 (237)
T ss_dssp T-----------CCCHHHHHHH---------TTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHH
T ss_pred C-----------CCCHHHHHHH---------hCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHH
Confidence 0 0111111112 277778888888877776666555 888887766553
No 51
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.90 E-value=5.6e-25 Score=191.84 Aligned_cols=123 Identities=28% Similarity=0.302 Sum_probs=116.1
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV 81 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 81 (298)
.+++++.++..|.||||+|+..++.+++++|+++|++++..+. .|+||||+|+..|+.++|++|+++|++++.+|.
T Consensus 108 ~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~----~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~ 183 (269)
T 4b93_B 108 HGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDL----SGNTPLIYACSGGHHELVALLLQHGASINASNN 183 (269)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT----TCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCT
T ss_pred cCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHCCCHHHHHHHHHCCCCCCcccc
Confidence 4688999999999999999999999999999999999999887 899999999999999999999999999999999
Q ss_pred CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhh
Q 041054 82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEAN 138 (298)
Q Consensus 82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~ 138 (298)
.|+||||+|+..|+.+++++|+++|+++ +.+|.+|+|||++|+.++.
T Consensus 184 ~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~----------~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 184 KGNTALHEAVIEKHVFVVELLLLHGASV----------QVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp TSCBHHHHHHHTTCHHHHHHHHHTTCCS----------CCCCTTSCCSGGGSCTTCH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCCC----------CCcCCCCCCHHHHHHhCCc
Confidence 9999999999999999999999999994 5678899999999987654
No 52
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.90 E-value=8.9e-24 Score=178.31 Aligned_cols=181 Identities=15% Similarity=0.081 Sum_probs=137.8
Q ss_pred cccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCcc--c-cCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC--CCCcccc
Q 041054 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVC--A-STGGYGCPGSTPLHLAARGGSIDCIRELLAWG--ADRLHRD 80 (298)
Q Consensus 6 vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~--~-~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g--ad~~~~d 80 (298)
++.+|..|+||||+|+..|+.+++++|+++|++++ . .+. .|+||||+|+..|+.+++++|+++| ++++..|
T Consensus 29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 104 (228)
T 2dzn_A 29 LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDD----SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT 104 (228)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCT----TSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCC
T ss_pred cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCC----CCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCC
Confidence 44588999999999999999999999999995444 3 333 7999999999999999999999998 8889999
Q ss_pred cCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCCCCCCCCCCCC
Q 041054 81 VSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSD 160 (298)
Q Consensus 81 ~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~~~~~~p~~~~ 160 (298)
..|.||||+|+..++.+++++|+++|+++ +..+..|.||||+|+..++.+++++|++.+........ ..
T Consensus 105 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d-~~ 173 (228)
T 2dzn_A 105 NQGVTCLHLAVGKKWFEVSQFLIENGASV----------RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD-KQ 173 (228)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCS----------CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCC-TT
T ss_pred cCCCCHHHHHHHcCCHhHHHHHHHcCCCc----------cccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcC-CC
Confidence 99999999999999999999999999984 55677889999999999999999888875521111110 00
Q ss_pred CCCcccccccCCCcccccccccccceEEeCCCchhHHHHHH-HHhhcCCCCCCCC-CCCCCCC
Q 041054 161 VGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTL-ALCCHNKPNPTTA-CLTPPVC 221 (298)
Q Consensus 161 ~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~-~l~~~~~~~~~~~-~~~~~~C 221 (298)
+...-.+... .||..+...++ ..++..+..+..+ ||++.+.
T Consensus 174 -----------g~t~L~~A~~---------~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~ 216 (228)
T 2dzn_A 174 -----------GWTPLFHALA---------EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216 (228)
T ss_dssp -----------SCCHHHHHHH---------TTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCS
T ss_pred -----------CCCHHHHHHH---------cCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHH
Confidence 0111111111 37888888888 7777766555555 7777764
No 53
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.90 E-value=2.6e-25 Score=202.59 Aligned_cols=205 Identities=17% Similarity=0.070 Sum_probs=165.7
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC---CCCcc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWG---ADRLH 78 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g---ad~~~ 78 (298)
.|+++|.+|..|+||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.| ++++.
T Consensus 155 ~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 230 (373)
T 2fo1_E 155 AGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNK----SERSALHQAAANRDFGMMVYMLNSTKLKGDIEE 230 (373)
T ss_dssp TCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT----TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSC
T ss_pred cCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCC----CCCCHHHHHHHCCCHHHHHHHHhcCccccChhh
Confidence 4789999999999999999999999999999999999998887 8999999999999999999999998 89999
Q ss_pred cccCCCcHHHHHHhcC---cHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC--CCCCC
Q 041054 79 RDVSGRIPYAVALKHK---HGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG--TAYSL 153 (298)
Q Consensus 79 ~d~~g~tpL~~A~~~~---~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~--~~~~~ 153 (298)
.|..|.||||+|+..+ +.+++++|+++|+++..... ......+..|.||||+|+..++.+++++|++. .++..
T Consensus 231 ~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~--~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~ 308 (373)
T 2fo1_E 231 LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA--ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK 308 (373)
T ss_dssp CCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG--GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTC
T ss_pred cCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccc--cccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccC
Confidence 9999999999999998 89999999999998654221 11123466789999999999999999998853 33322
Q ss_pred CCCCCCCCCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCcccccccceeE
Q 041054 154 PSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRSTIAHLV 232 (298)
Q Consensus 154 ~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I~~~~ 232 (298)
... . +...-.+... .||..++..++..++..+..+..+ |+++.++-..+..|++++
T Consensus 309 ~d~---~-----------g~TpL~~A~~---------~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~L 365 (373)
T 2fo1_E 309 QDE---D-----------GKTPIMLAAQ---------EGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365 (373)
T ss_dssp CCT---T-----------CCCHHHHHHH---------HTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred cCC---C-----------CCCHHHHHHH---------cCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 111 0 0111111111 388889999999988877666666 999999999998888877
Q ss_pred EEE
Q 041054 233 VVK 235 (298)
Q Consensus 233 ~~~ 235 (298)
+..
T Consensus 366 l~~ 368 (373)
T 2fo1_E 366 DRC 368 (373)
T ss_dssp HTT
T ss_pred Hhc
Confidence 543
No 54
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.90 E-value=9.9e-25 Score=197.53 Aligned_cols=199 Identities=14% Similarity=0.063 Sum_probs=144.2
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHc----CCCCcc
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW----GADRLH 78 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~----gad~~~ 78 (298)
|.++|.+|..|+||||+|+..|+.++|++|+++|++++.. .|.||||+|+..|+.++|++|++. |++++.
T Consensus 43 g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~------~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 116 (364)
T 3ljn_A 43 GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW------HGQKPIHLAVMANKTDLVVALVEGAKERGQMPES 116 (364)
T ss_dssp TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCB------TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc------CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHH
Confidence 5667777777777777777777777777777777754432 467777777777777777777777 666666
Q ss_pred -----------------cccCCCcHHHHHHhcC--cHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhH
Q 041054 79 -----------------RDVSGRIPYAVALKHK--HGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANK 139 (298)
Q Consensus 79 -----------------~d~~g~tpL~~A~~~~--~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~ 139 (298)
.|..|.||||+|+..| +.+++++|+++|++ ++..+..|.|||++|+..++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~----------~~~~d~~g~t~L~~A~~~g~~ 186 (364)
T 3ljn_A 117 LLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS----------PTAKDKADETPLMRAMEFRNR 186 (364)
T ss_dssp HHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC----------TTCCCTTSCCHHHHHHHTTCH
T ss_pred HHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC----------CcccCCCCCCHHHHHHHcCCH
Confidence 8888999999999999 89999999999988 455677889999999999999
Q ss_pred HHHHHHhcCCCC-CCCCCCCCCCCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCC
Q 041054 140 EREKNILKGTAY-SLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLT 217 (298)
Q Consensus 140 ~~~~~ll~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~ 217 (298)
+++++|++.+.. ........+. .+...-.+ ....||..++..++..+++.+..+..+ ||+
T Consensus 187 ~~v~~Ll~~g~~~~~~~~~~~~~---------~g~t~L~~---------A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 248 (364)
T 3ljn_A 187 EALDLMMDTVPSKSSLRLDYANK---------QGNSHLHW---------AILINWEDVAMRFVEMGIDVNMEDNEHTVPL 248 (364)
T ss_dssp HHHHHHHHHCSCSSSCCTTCCCT---------TCCCTTHH---------HHTTTCHHHHHHHHTTTCCTTCCCTTSCCHH
T ss_pred HHHHHHHhcccccccccccccCC---------CCCcHHHH---------HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 988888764321 1100110100 00011011 112388889999999988887766666 999
Q ss_pred CCCCcccccccceeEEEE
Q 041054 218 PPVCPFCRSTIAHLVVVK 235 (298)
Q Consensus 218 ~~~Cp~cr~~I~~~~~~~ 235 (298)
+.+|-..+..|+++++..
T Consensus 249 ~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 249 YLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHHHTCCHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHc
Confidence 999999999999998875
No 55
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.90 E-value=7.5e-24 Score=175.48 Aligned_cols=121 Identities=23% Similarity=0.243 Sum_probs=61.7
Q ss_pred CCCcHHHHHHHcCChHHHHHHHhCCC-CccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHH
Q 041054 12 RGATPLHLAARQRRPECVHILLDSGA-LVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVA 90 (298)
Q Consensus 12 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga-~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A 90 (298)
.+.||||.|+..|+.+.|+.||..+. +++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A 79 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDT----EGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA 79 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 44555555555555555555555433 4444443 455555555555555555555555555555555555555555
Q ss_pred HhcCcHHHHHHhc-cCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHh
Q 041054 91 LKHKHGACAALLN-PASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNIL 146 (298)
Q Consensus 91 ~~~~~~~~~~~Ll-~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll 146 (298)
+..++.+++++|+ ..+++ ++..+..+.||||+|+..++.+++++|+
T Consensus 80 ~~~~~~~~~~~Ll~~~~~~----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 126 (201)
T 3hra_A 80 GAQGRTEILAYMLKHATPD----------LNKHNRYGGNALIPAAEKGHIDNVKLLL 126 (201)
T ss_dssp HHTTCHHHHHHHHHHSCCC----------TTCCCTTSCCSHHHHHHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHhccCcc----------cccccCCCCcHHHHHHHcCCHHHHHHHH
Confidence 5555555555555 22333 2333444455555555555555444443
No 56
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.90 E-value=6.9e-24 Score=170.91 Aligned_cols=123 Identities=19% Similarity=0.175 Sum_probs=116.2
Q ss_pred CCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHH
Q 041054 12 RGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVAL 91 (298)
Q Consensus 12 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~ 91 (298)
.|.||||+|+..|+.+++++|++.|++++..+. .|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 77 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDE----EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLAC 77 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCC----CCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence 589999999999999999999999999988887 8999999999999999999999999999999999999999999
Q ss_pred hcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054 92 KHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG 148 (298)
Q Consensus 92 ~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~ 148 (298)
..++.+++++|+++|++ ++..+..|.||||+|+..++.+++++|++.
T Consensus 78 ~~~~~~~v~~Ll~~g~~----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 124 (167)
T 3v31_A 78 SKGYTDIVKMLLDCGVD----------VNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124 (167)
T ss_dssp HHTCHHHHHHHHHHTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHCCCC----------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 99999999999999998 456678899999999999999999988764
No 57
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.90 E-value=3.1e-24 Score=184.85 Aligned_cols=139 Identities=21% Similarity=0.296 Sum_probs=121.3
Q ss_pred CCCccc----CCCCCCcHHHHHHHc---CChHHHHHHHhCCCCccccC-------CCCCCCCChHHHHHHHcCCHHHHHH
Q 041054 3 ARFVNI----RDGRGATPLHLAARQ---RRPECVHILLDSGALVCAST-------GGYGCPGSTPLHLAARGGSIDCIRE 68 (298)
Q Consensus 3 ~~~vn~----~d~~G~TpLh~Aa~~---g~~~~v~~Ll~~ga~~~~~~-------~~~~~~g~TpLh~A~~~g~~~~v~~ 68 (298)
+.++|. +|..|+||||+|+.. |+.++|++|++.|++++... ...|..|+||||+|+..|+.++|++
T Consensus 29 g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~ 108 (256)
T 2etb_A 29 SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKL 108 (256)
T ss_dssp TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHH
T ss_pred CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHH
Confidence 577887 899999999999999 99999999999998876433 1223479999999999999999999
Q ss_pred HHHcCCCCcccccC-------------CCcHHHHHHhcCcHHHHHHhcc---CCCCCCCCCCChhhhhHhhHHHHHHHHH
Q 041054 69 LLAWGADRLHRDVS-------------GRIPYAVALKHKHGACAALLNP---ASAEPLVWPSPLKFISELNQEAKALLEN 132 (298)
Q Consensus 69 Ll~~gad~~~~d~~-------------g~tpL~~A~~~~~~~~~~~Ll~---~ga~~~~~~~~~~~~~~~~~~~~t~L~~ 132 (298)
|+++|++++.+|.. |.||||+|+..|+.+++++|++ +|++ ++..|.+|.||||+
T Consensus 109 Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~----------~n~~d~~g~TpLh~ 178 (256)
T 2etb_A 109 LVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS----------LEATDSLGNTVLHA 178 (256)
T ss_dssp HHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC----------TTCCCTTSCCHHHH
T ss_pred HHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC----------cCccCCCCCCHHHH
Confidence 99999999999986 9999999999999999999999 8998 46678899999999
Q ss_pred HHH--hhhHH-------HHHHHhc-CCCC
Q 041054 133 ALM--EANKE-------REKNILK-GTAY 151 (298)
Q Consensus 133 A~~--~~~~~-------~~~~ll~-~~~~ 151 (298)
|+. .++.+ ++++|++ |+++
T Consensus 179 A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~ 207 (256)
T 2etb_A 179 LVMIADNSPENSALVIHMYDGLLQMGARL 207 (256)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence 998 67776 7777766 4443
No 58
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.90 E-value=2.4e-23 Score=175.66 Aligned_cols=135 Identities=24% Similarity=0.227 Sum_probs=122.9
Q ss_pred CCccc-CCCCCCcHHHHHHHcCChHHHHHHHhCC--CCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054 4 RFVNI-RDGRGATPLHLAARQRRPECVHILLDSG--ALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD 80 (298)
Q Consensus 4 ~~vn~-~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g--a~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d 80 (298)
.+++. +|..|+||||+|+..|+.+++++|+++| ++++..+. .|.||||+|+..|+.+++++|+++|++++.+|
T Consensus 62 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~ 137 (228)
T 2dzn_A 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN----QGVTCLHLAVGKKWFEVSQFLIENGASVRIKD 137 (228)
T ss_dssp CCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCc----CCCCHHHHHHHcCCHhHHHHHHHcCCCccccC
Confidence 45555 8899999999999999999999999998 77777776 89999999999999999999999999999999
Q ss_pred cCCCcHHHHHHhcCcHHHHHHhccCC-CCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHh-c-CCCCC
Q 041054 81 VSGRIPYAVALKHKHGACAALLNPAS-AEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNIL-K-GTAYS 152 (298)
Q Consensus 81 ~~g~tpL~~A~~~~~~~~~~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll-~-~~~~~ 152 (298)
..|.||||+|+..++.+++++|+++| ++ ++..+..|.||||+|+..++.+++++|+ + |+++.
T Consensus 138 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~ 202 (228)
T 2dzn_A 138 KFNQIPLHRAASVGSLKLIELLCGLGKSA----------VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202 (228)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHTTTCCC----------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhcCccc----------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999 76 4567888999999999999999999887 4 56544
No 59
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.90 E-value=6.9e-25 Score=185.18 Aligned_cols=132 Identities=23% Similarity=0.145 Sum_probs=116.6
Q ss_pred cccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCcccccCCC
Q 041054 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW-GADRLHRDVSGR 84 (298)
Q Consensus 6 vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~ 84 (298)
++..|..|.||||+|+..|+.++|++|++.|++++..+. .|+||||+|+..|+.++|++|++. |++++.+|..|+
T Consensus 66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~ 141 (222)
T 3ehr_A 66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK----AGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGD 141 (222)
T ss_dssp HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSC
T ss_pred ccccccccccccccccccCcHHHHHHHHhCCCCccccCC----CCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCC
Confidence 445677899999999999999999999999999998887 899999999999999999999999 999999999999
Q ss_pred cHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCCC
Q 041054 85 IPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTAY 151 (298)
Q Consensus 85 tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~~ 151 (298)
||||+|+..|+.+++++|+++|++ ++..+.+|.|||++|+..+..++++.++.....
T Consensus 142 tpL~~A~~~~~~~~v~~Ll~~ga~----------~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~ 198 (222)
T 3ehr_A 142 TALHAAAWKGYADIVQLLLAKGAR----------TDLRNIEKKLAFDMATNAACASLLKKKQGTDAV 198 (222)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCC----------SCCCCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC----------CccccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence 999999999999999999999999 456788899999999999999988888775543
No 60
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.90 E-value=9.8e-25 Score=198.81 Aligned_cols=206 Identities=17% Similarity=0.116 Sum_probs=160.6
Q ss_pred CCCcccCC-CCCCcHHHHHHHcCChHHHHHHH--------hCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC
Q 041054 3 ARFVNIRD-GRGATPLHLAARQRRPECVHILL--------DSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWG 73 (298)
Q Consensus 3 ~~~vn~~d-~~G~TpLh~Aa~~g~~~~v~~Ll--------~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g 73 (298)
..++|.+| ..|+||||+|+..|+.++|++|+ +.|+++|..+. .|+||||+|+..|+.++|++|+++|
T Consensus 114 ~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~----~g~TpL~~A~~~g~~~iv~~Ll~~g 189 (373)
T 2fo1_E 114 RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC----DENTPLMLAVLARRRRLVAYLMKAG 189 (373)
T ss_dssp TTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred cccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCC----CCCCHHHHHHHcChHHHHHHHHHCC
Confidence 35788898 79999999999999998888776 88999999887 8999999999999999999999999
Q ss_pred CCCcccccCCCcHHHHHHhcCcHHHHHHhccCC---CCCCCCCCChhhhhHhhHHHHHHHHHHHHhh---hHHHHHHHhc
Q 041054 74 ADRLHRDVSGRIPYAVALKHKHGACAALLNPAS---AEPLVWPSPLKFISELNQEAKALLENALMEA---NKEREKNILK 147 (298)
Q Consensus 74 ad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~g---a~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~---~~~~~~~ll~ 147 (298)
++++.+|..|.||||+|+..|+.+++++|++++ ++ ++..+..|.|+|++|+..+ ..+++++|++
T Consensus 190 a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~----------~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~ 259 (373)
T 2fo1_E 190 ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD----------IEELDRNGMTALMIVAHNEGRDQVASAKLLVE 259 (373)
T ss_dssp CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT----------TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHH
T ss_pred CCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccC----------hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHH
Confidence 999999999999999999999999999999987 45 4566888999999999987 7888877765
Q ss_pred -CCCCCCCCCCCCCCCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHh-hcCCCCCCCC-CCCCCCCccc
Q 041054 148 -GTAYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALC-CHNKPNPTTA-CLTPPVCPFC 224 (298)
Q Consensus 148 -~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~-~~~~~~~~~~-~~~~~~Cp~c 224 (298)
+.++........+ .....+...-.+ ..-.||..++..++..+ +..+..+..+ ||++.++-.+
T Consensus 260 ~g~~~~~~~~~~~~------~~d~~g~t~Lh~---------A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g 324 (373)
T 2fo1_E 260 KGAKVDYDGAARKD------SEKYKGRTALHY---------AAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG 324 (373)
T ss_dssp HTCCSSCCSGGGTS------SSSCCCCCTHHH---------HHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHT
T ss_pred CCCCcccccccccC------cccccCCCHHHH---------HHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcC
Confidence 4544321110000 000000011011 11247888888888775 6666555555 9999999999
Q ss_pred ccccceeEEEEee
Q 041054 225 RSTIAHLVVVKIE 237 (298)
Q Consensus 225 r~~I~~~~~~~~~ 237 (298)
+..|+++++....
T Consensus 325 ~~~iv~~Ll~~ga 337 (373)
T 2fo1_E 325 RIEVVMYLIQQGA 337 (373)
T ss_dssp CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCC
Confidence 9999999987543
No 61
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.90 E-value=5.2e-24 Score=185.28 Aligned_cols=139 Identities=23% Similarity=0.145 Sum_probs=120.0
Q ss_pred CCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCC----------CCCCCCChHHHHHHHcCCHHHHHHHHH---cCCC
Q 041054 9 RDGRGATPLHLAARQRRPECVHILLDSGALVCASTG----------GYGCPGSTPLHLAARGGSIDCIRELLA---WGAD 75 (298)
Q Consensus 9 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~----------~~~~~g~TpLh~A~~~g~~~~v~~Ll~---~gad 75 (298)
+|..|+||||+|+..|+.++|++||++|++++..+. ..+..|.||||+|+..|+.++|++|++ +|++
T Consensus 97 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad 176 (273)
T 2pnn_A 97 SYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD 176 (273)
T ss_dssp TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC
T ss_pred ccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC
Confidence 678999999999999999999999999999998774 111259999999999999999999999 9999
Q ss_pred CcccccCCCcHHHHHHhcCc---------HHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHh
Q 041054 76 RLHRDVSGRIPYAVALKHKH---------GACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNIL 146 (298)
Q Consensus 76 ~~~~d~~g~tpL~~A~~~~~---------~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll 146 (298)
++.+|..|+||||+|+..++ .+++++|+++|+++.... ..++..+..|.|||++|+..++.+++++|+
T Consensus 177 ~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~---~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll 253 (273)
T 2pnn_A 177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL---KLEEITNRKGLTPLALAASSGKIGVLAYIL 253 (273)
T ss_dssp TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTC---CGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccccc---ccccccCCCCCCHHHHHHHhChHHHHHHHH
Confidence 99999999999999999888 799999999998732110 111347889999999999999999998887
Q ss_pred cCCC
Q 041054 147 KGTA 150 (298)
Q Consensus 147 ~~~~ 150 (298)
+.+.
T Consensus 254 ~~ga 257 (273)
T 2pnn_A 254 QREI 257 (273)
T ss_dssp HHHT
T ss_pred HCCC
Confidence 7544
No 62
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.89 E-value=4.7e-24 Score=193.07 Aligned_cols=130 Identities=18% Similarity=0.129 Sum_probs=122.1
Q ss_pred cccCCCCCCcHHHHHHHcC--ChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC-----Ccc
Q 041054 6 VNIRDGRGATPLHLAARQR--RPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGAD-----RLH 78 (298)
Q Consensus 6 vn~~d~~G~TpLh~Aa~~g--~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad-----~~~ 78 (298)
++.+|..|+||||+|+..| +.++|++|+++|++++..+. .|+||||+|+..|+.++|++|+++|++ ++.
T Consensus 131 ~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~----~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~ 206 (364)
T 3ljn_A 131 SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK----ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY 206 (364)
T ss_dssp TEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTC
T ss_pred cccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCC----CCCCHHHHHHHcCCHHHHHHHHhcccccccccccc
Confidence 3448899999999999999 99999999999999999887 899999999999999999999999999 999
Q ss_pred cccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054 79 RDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT 149 (298)
Q Consensus 79 ~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~ 149 (298)
+|..|+||||+|+..|+.+++++|+++|++ ++..|..|.|||++|+..++.+++++|++.+
T Consensus 207 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad----------~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~ 267 (364)
T 3ljn_A 207 ANKQGNSHLHWAILINWEDVAMRFVEMGID----------VNMEDNEHTVPLYLSVRAAMVLLTKELLQKT 267 (364)
T ss_dssp CCTTCCCTTHHHHTTTCHHHHHHHHTTTCC----------TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHS
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----------CCCCCCCCCCHHHHHHHhChHHHHHHHHHcC
Confidence 999999999999999999999999999999 4667889999999999999999999988754
No 63
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.89 E-value=2.1e-24 Score=193.31 Aligned_cols=223 Identities=19% Similarity=0.121 Sum_probs=146.9
Q ss_pred CCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCC--------------
Q 041054 11 GRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADR-------------- 76 (298)
Q Consensus 11 ~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~-------------- 76 (298)
.+|.|+||.|++.|++++|++||++|+++|.++.. .|+||||+|+..|+.++|++||++|+++
T Consensus 23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~---~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~ 99 (337)
T 4g8k_A 23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE---GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA 99 (337)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT---TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCC---CCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHH
Confidence 35778888888888888888888888888877652 4888888888888888888888887754
Q ss_pred -------------------cccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhh
Q 041054 77 -------------------LHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEA 137 (298)
Q Consensus 77 -------------------~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~ 137 (298)
+..|..|.||||+|+..++.+++++|+++|+++.............+..|.||||+|+..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g 179 (337)
T 4g8k_A 100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 179 (337)
T ss_dssp HHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred HhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Confidence 4567789999999999999999999999999987766655556667778999999999999
Q ss_pred hHHHHHHHhc--CCCCCCCCCCCCCCCCccccc-ccCC-CcccccccccccceEEe------------CCCchhHHHHHH
Q 041054 138 NKEREKNILK--GTAYSLPSPSHSDVGADDNIS-EASD-TELCCICFEQVCTIEVQ------------DCGHQMCAQCTL 201 (298)
Q Consensus 138 ~~~~~~~ll~--~~~~~~~~p~~~~~~~~~~~~-~~~~-~~~C~IC~~~~~~~~~~------------~CGH~~C~~C~~ 201 (298)
+.+++++|+. |+++................. .... .....+.++..+++... ..|+..+...++
T Consensus 180 ~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll 259 (337)
T 4g8k_A 180 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 259 (337)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHH
Confidence 9999999874 555443221111000000000 0000 00111122222222111 145555555554
Q ss_pred HH-hhcCCCCCCCC-CCCCCCCcccccccceeEEEEe
Q 041054 202 AL-CCHNKPNPTTA-CLTPPVCPFCRSTIAHLVVVKI 236 (298)
Q Consensus 202 ~l-~~~~~~~~~~~-~~~~~~Cp~cr~~I~~~~~~~~ 236 (298)
.. ++..+..+..+ ||++.+|-..+..|+++|+...
T Consensus 260 ~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G 296 (337)
T 4g8k_A 260 EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG 296 (337)
T ss_dssp TSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS
T ss_pred HhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 43 33444444444 8888888888888888887653
No 64
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.89 E-value=3.9e-24 Score=182.09 Aligned_cols=132 Identities=17% Similarity=0.079 Sum_probs=119.1
Q ss_pred cccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCc
Q 041054 6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRI 85 (298)
Q Consensus 6 vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t 85 (298)
.+..+..|.||||+|+..|+.++|++|++.|++++..+. .|+||||+|+..|+.++|++|+++|++++.+|..|+|
T Consensus 14 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~----~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t 89 (229)
T 2vge_A 14 ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNE----EGITALHNAICGANYSIVDFLITAGANVNSPDSHGWT 89 (229)
T ss_dssp CCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred ccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC
Confidence 345566788899999999999999999999999998887 8999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhh-HHHHHHHHHH--HHhhhHHHHHHHhcC-CCC
Q 041054 86 PYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELN-QEAKALLENA--LMEANKEREKNILKG-TAY 151 (298)
Q Consensus 86 pL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~-~~~~t~L~~A--~~~~~~~~~~~ll~~-~~~ 151 (298)
|||+|+..|+.+++++|+++|+++ +..+ ..|.|||++| +..++.+++++|++. +++
T Consensus 90 pLh~A~~~g~~~~v~~Ll~~ga~~----------~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~ 149 (229)
T 2vge_A 90 PLHCAASCNDTVICMALVQHGAAI----------FATTLSDGATAFEKCDPYREGYADCATYLADVEQSM 149 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCT----------TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCc----------ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc
Confidence 999999999999999999999994 4443 5899999999 899999998888764 443
No 65
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.89 E-value=1.7e-23 Score=169.30 Aligned_cols=127 Identities=31% Similarity=0.325 Sum_probs=116.5
Q ss_pred CCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHH
Q 041054 9 RDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYA 88 (298)
Q Consensus 9 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~ 88 (298)
....+.|+||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 85 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDA----SGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLR 85 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHH
Confidence 345678999999999999999999999999998877 8999999999999999999999999999999999999999
Q ss_pred HHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054 89 VALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT 149 (298)
Q Consensus 89 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~ 149 (298)
+|+..++.+++++|+++|++ ++..+..+.||||+|+..++.+++++|++.+
T Consensus 86 ~A~~~~~~~~~~~Ll~~g~~----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 136 (169)
T 2y1l_E 86 LAALFGHLEIVEVLLKNGAD----------VNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136 (169)
T ss_dssp HHHHTTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHcCCC----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 99999999999999999998 4556778999999999999999999887753
No 66
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.89 E-value=1.2e-23 Score=167.99 Aligned_cols=117 Identities=26% Similarity=0.258 Sum_probs=96.5
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCCh-HHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGST-PLHLAARGGSIDCIRELLAWGADRLHRD 80 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~T-pLh~A~~~g~~~~v~~Ll~~gad~~~~d 80 (298)
.+.++|.+|..|+||||+|+ .|+.+++++|+++|++++..+. .|+| |||+|+..|+.+++++|+++|++++.+|
T Consensus 34 ~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~----~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d 108 (156)
T 1bi7_B 34 AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADP----ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD 108 (156)
T ss_dssp TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCT----TTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCC
T ss_pred cCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCC----CCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccC
Confidence 47889999999999999985 9999999999999999999887 7999 9999999999999999999999999999
Q ss_pred cCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHH
Q 041054 81 VSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENA 133 (298)
Q Consensus 81 ~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A 133 (298)
..|.||||+|+..++.+++++|+++|++ ++..+..+.|+.+.+
T Consensus 109 ~~g~tpl~~A~~~~~~~~v~~Ll~~ga~----------~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 109 AWGRLPVDLAEELGHRDVARYLRAAAGG----------TRGSNHARIDAAEGP 151 (156)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHSSCC---------------------------
T ss_pred CCCCCHHHHHHHhCHHHHHHHHHHcCCC----------CCccCcCcCcccccC
Confidence 9999999999999999999999999999 466777888877643
No 67
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.89 E-value=3.2e-24 Score=183.50 Aligned_cols=132 Identities=14% Similarity=0.098 Sum_probs=111.7
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV 81 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 81 (298)
.|++++.. ..|.||||+|+..|+.++|++||+.|++++..+. .|+||||+|+..|+.++|++|+++|++++.+|.
T Consensus 27 ~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~ 101 (239)
T 1ycs_B 27 HGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPND----EGITALHNAVCAGHTEIVKFLVQFGVNVNAADS 101 (239)
T ss_dssp -----------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCT----TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT
T ss_pred cCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC
Confidence 35667754 6889999999999999999999999999998887 899999999999999999999999999999999
Q ss_pred CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHH-HHHHHH--HHhhhHHHHHHHhcC
Q 041054 82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAK-ALLENA--LMEANKEREKNILKG 148 (298)
Q Consensus 82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~-t~L~~A--~~~~~~~~~~~ll~~ 148 (298)
.|+||||+|+..++.+++++|+++|+++ +..+..+. |||++| +..++.+++++|+..
T Consensus 102 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~----------~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~ 161 (239)
T 1ycs_B 102 DGWTPLHCAASCNNVQVCKFLVESGAAV----------FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161 (239)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCT----------TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCc----------ceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence 9999999999999999999999999994 44555555 999999 677888888887764
No 68
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.89 E-value=3.4e-23 Score=181.91 Aligned_cols=193 Identities=18% Similarity=0.112 Sum_probs=148.8
Q ss_pred CCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHH
Q 041054 10 DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAV 89 (298)
Q Consensus 10 d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~ 89 (298)
+..|.||||+|+..|+.++|++||++|++++..+. .|.||||+|+..|+.++|++|+++|++++.+|..|.||||+
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~ 112 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANV----DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHA 112 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCT----TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence 45678999999999999999999999999998887 89999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHhccCCCCCCCCC----CChhhhhH--------------------------------------------
Q 041054 90 ALKHKHGACAALLNPASAEPLVWP----SPLKFISE-------------------------------------------- 121 (298)
Q Consensus 90 A~~~~~~~~~~~Ll~~ga~~~~~~----~~~~~~~~-------------------------------------------- 121 (298)
|+..|+.+++++|+++|+++.... +|.+....
T Consensus 113 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (299)
T 1s70_B 113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND 192 (299)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcch
Confidence 999999999999999999876543 22221100
Q ss_pred --hhHHHHHHHHHHHHhhhHHHHHHHhcCC-CCCCCCCCCCCCCCcccccccCCCcccccccccccceEEeCCCchhHHH
Q 041054 122 --LNQEAKALLENALMEANKEREKNILKGT-AYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQ 198 (298)
Q Consensus 122 --~~~~~~t~L~~A~~~~~~~~~~~ll~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~ 198 (298)
.+..|.||||+|+..++.+++++|++.+ ++.... .. +...-.++.. .||..+..
T Consensus 193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d---~~-----------g~tpL~~A~~---------~~~~~~v~ 249 (299)
T 1s70_B 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD---YD-----------GWTPLHAAAH---------WGKEEACR 249 (299)
T ss_dssp CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCC---TT-----------CCCHHHHHHH---------TTCHHHHH
T ss_pred hhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcC---CC-----------CCcHHHHHHh---------cCCHHHHH
Confidence 1234678999999999999888887643 322110 00 0111111111 37888999
Q ss_pred HHHHHhhcCCCCCCCC-CCCCCCCcccccccc
Q 041054 199 CTLALCCHNKPNPTTA-CLTPPVCPFCRSTIA 229 (298)
Q Consensus 199 C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I~ 229 (298)
.++..+++.+..+..+ ||++.++......|.
T Consensus 250 ~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~l~ 281 (299)
T 1s70_B 250 ILVENLCDMEAVNKVGQTAFDVADEDILGYLE 281 (299)
T ss_dssp HHHHTTCCTTCCCTTSCCTTTSCCSGGGHHHH
T ss_pred HHHHcCCCCCCcCCCCCCHHHHHHHHHHHHHH
Confidence 9999988877666666 999999765444433
No 69
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.89 E-value=2.7e-23 Score=182.46 Aligned_cols=189 Identities=13% Similarity=0.075 Sum_probs=145.9
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV 81 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 81 (298)
.|+++|.+| |+||||+|+..|+.++|++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus 53 ~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~ 126 (285)
T 3kea_A 53 AGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDD----KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGK 126 (285)
T ss_dssp TTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSS
T ss_pred CCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC----CCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCC
Confidence 466777774 99999999999999999999999999998887 899999999999999999999999999999999
Q ss_pred CC-CcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC-CCCCCCCCCCC
Q 041054 82 SG-RIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG-TAYSLPSPSHS 159 (298)
Q Consensus 82 ~g-~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~-~~~~~~~p~~~ 159 (298)
.| .||||+|+..++.+++++|+++|++... ...|.||||+|+..++.+++++|++. +++........
T Consensus 127 ~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-----------~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~ 195 (285)
T 3kea_A 127 TGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD-----------LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLF 195 (285)
T ss_dssp SGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC-----------CSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCcccc-----------ccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCC
Confidence 99 8999999999999999999999987321 12789999999999999998888764 44332111000
Q ss_pred CCCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054 160 DVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK 235 (298)
Q Consensus 160 ~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~ 235 (298)
+ ..-.+... .||..+...++..+++.+... ..+++..+..|+++++..
T Consensus 196 ---t----------~~L~~A~~---------~~~~~~v~~Ll~~gad~~~~~------~~a~~~~~~~iv~~Ll~~ 243 (285)
T 3kea_A 196 ---I----------PDIKLAID---------NKDIEMLQALFKYDINIYSAN------LENVLLDDAEIAKMIIEK 243 (285)
T ss_dssp ---C----------TTHHHHHH---------HTCHHHHHHHTTSCBCSTTTT------GGGGTTTCHHHHHHHHHH
T ss_pred ---C----------hHHHHHHH---------cCCHHHHHHHHHcCCCCCCCC------hhhhhcCCHHHHHHHHHc
Confidence 0 00011111 266667777777655554322 355667777777777654
No 70
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.89 E-value=6.8e-24 Score=189.93 Aligned_cols=146 Identities=18% Similarity=0.114 Sum_probs=122.4
Q ss_pred CCCCccc-CCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCC---HHHHHHHHHcC-CCC
Q 041054 2 YARFVNI-RDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGS---IDCIRELLAWG-ADR 76 (298)
Q Consensus 2 ~~~~vn~-~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~---~~~v~~Ll~~g-ad~ 76 (298)
.+.++|. +|..|+||||+|+..|+.++|++||++|++++..+. .|+||||+|+..|+ .++++.|++++ +++
T Consensus 119 ~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~----~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~ 194 (327)
T 1sw6_A 119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN----MGESCLVKAVKSVNNYDSGTFEALLDYLYPCL 194 (327)
T ss_dssp SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCT----TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGG
T ss_pred cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----CCCCHHHHHHHhcccccHHHHHHHHHhhhccc
Confidence 4688999 899999999999999999999999999999998887 89999999999998 78889999986 789
Q ss_pred cccccCCCcHHHHHHh----cCcHHHHHHhccC--------------------CCCCCCCC----CChh-----------
Q 041054 77 LHRDVSGRIPYAVALK----HKHGACAALLNPA--------------------SAEPLVWP----SPLK----------- 117 (298)
Q Consensus 77 ~~~d~~g~tpL~~A~~----~~~~~~~~~Ll~~--------------------ga~~~~~~----~~~~----------- 117 (298)
+.+|..|+||||+|+. .++.+++++|++. |+++.... +|..
T Consensus 195 ~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~ 274 (327)
T 1sw6_A 195 ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN 274 (327)
T ss_dssp GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHh
Confidence 9999999999999999 8999999999876 45544332 1111
Q ss_pred hhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC-CCC
Q 041054 118 FISELNQEAKALLENALMEANKEREKNILKG-TAY 151 (298)
Q Consensus 118 ~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~-~~~ 151 (298)
.++..+..|.||||+|+..++.+++++|++. +++
T Consensus 275 ~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~ 309 (327)
T 1sw6_A 275 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP 309 (327)
T ss_dssp TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 2566788899999999999999999888764 443
No 71
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.89 E-value=1.9e-23 Score=181.67 Aligned_cols=134 Identities=24% Similarity=0.234 Sum_probs=115.4
Q ss_pred cCCCCCCcHHHHHHHc---CChHHHHHHHhCCCC-------ccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCc
Q 041054 8 IRDGRGATPLHLAARQ---RRPECVHILLDSGAL-------VCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRL 77 (298)
Q Consensus 8 ~~d~~G~TpLh~Aa~~---g~~~~v~~Ll~~ga~-------~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~ 77 (298)
.+|..|+||||+|+.. |+.++|++||++|++ ++......|..|+||||+|+..|+.++|++|+++|++++
T Consensus 49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~ 128 (273)
T 2pnn_A 49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ 128 (273)
T ss_dssp SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 4588999999999987 999999999999876 333222334489999999999999999999999999999
Q ss_pred cccc--------------CCCcHHHHHHhcCcHHHHHHhcc---CCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhh--
Q 041054 78 HRDV--------------SGRIPYAVALKHKHGACAALLNP---ASAEPLVWPSPLKFISELNQEAKALLENALMEAN-- 138 (298)
Q Consensus 78 ~~d~--------------~g~tpL~~A~~~~~~~~~~~Ll~---~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~-- 138 (298)
.++. .|.||||+|+..|+.+++++|++ +|++ ++..+..|.||||+|+..++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad----------~~~~d~~g~tpLh~A~~~~~~~ 198 (273)
T 2pnn_A 129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD----------ISARDSVGNTVLHALVEVADNT 198 (273)
T ss_dssp CCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC----------TTCCCTTSCCHHHHHHHHCCSC
T ss_pred ccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC----------ceeeCCCCCcHHHHHHHccCcc
Confidence 9997 79999999999999999999999 8998 46678899999999999876
Q ss_pred -------HHHHHHHhc-CCCC
Q 041054 139 -------KEREKNILK-GTAY 151 (298)
Q Consensus 139 -------~~~~~~ll~-~~~~ 151 (298)
.+++++|++ |+++
T Consensus 199 ~~~~~~~~~~v~~Ll~~ga~~ 219 (273)
T 2pnn_A 199 VDNTKFVTSMYNEILILGAKL 219 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhc
Confidence 677776665 4443
No 72
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.89 E-value=2.1e-23 Score=166.96 Aligned_cols=125 Identities=24% Similarity=0.164 Sum_probs=115.1
Q ss_pred CCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHH
Q 041054 11 GRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVA 90 (298)
Q Consensus 11 ~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A 90 (298)
....||||+|+..|+.+++++|+++|++++..+. .|+||||+|+. |+.+++++|++.|++++.+|..|.||||+|
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 77 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNG----FGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDA 77 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCT----TSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhCCCCccccCc----cCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 3467999999999999999999999999998877 89999999999 999999999999999999999999999999
Q ss_pred HhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCC
Q 041054 91 LKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTA 150 (298)
Q Consensus 91 ~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~ 150 (298)
+..++.+++++|+++|++ ++..+..|.||||+|+..++.+++++|++.+.
T Consensus 78 ~~~~~~~~v~~Ll~~g~~----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 127 (162)
T 1ihb_A 78 ARAGFLDTLQTLLEFQAD----------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127 (162)
T ss_dssp HHHTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHcCCHHHHHHHHHcCCC----------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccC
Confidence 999999999999999998 45667889999999999999999998887544
No 73
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.89 E-value=1.2e-23 Score=172.65 Aligned_cols=133 Identities=23% Similarity=0.171 Sum_probs=106.9
Q ss_pred CCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc-cCCCcHHH
Q 041054 10 DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD-VSGRIPYA 88 (298)
Q Consensus 10 d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~tpL~ 88 (298)
|..|+||||+|+..|+.+++++|++ |++++..+. .|+||||+|+..|+.+++++|+++|++++.+| ..|+||||
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~ 115 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDE----NGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH 115 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHH
Confidence 5688999999999999999999999 999998887 89999999999999999999999999999998 88999999
Q ss_pred HHHhcCcHHHHHHhccCCCCCCCCC----CChhhhhHh--hHHHHHHHHHHHHhhhHHHHHHHhc
Q 041054 89 VALKHKHGACAALLNPASAEPLVWP----SPLKFISEL--NQEAKALLENALMEANKEREKNILK 147 (298)
Q Consensus 89 ~A~~~~~~~~~~~Ll~~ga~~~~~~----~~~~~~~~~--~~~~~t~L~~A~~~~~~~~~~~ll~ 147 (298)
+|+..++.+++++|+++|+++.... +|.++.... ...+.++|++|...+..+++++|.+
T Consensus 116 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~~~~~i~~~L~~ 180 (183)
T 3deo_A 116 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEG 180 (183)
T ss_dssp HHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcccccHHHHHHHcCHHHHHHHHHH
Confidence 9999999999999999999964432 122221111 1122344555555566666666643
No 74
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.89 E-value=8.8e-23 Score=182.53 Aligned_cols=133 Identities=26% Similarity=0.287 Sum_probs=92.3
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC------
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGAD------ 75 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad------ 75 (298)
.|.++|.+|..|+||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++
T Consensus 80 ~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 155 (351)
T 3utm_A 80 HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDL----WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC 155 (351)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred cCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC
Confidence 3566777777777777777777777777777777777776665 566777777766666666666665554
Q ss_pred --------------------------------------------------------------------------------
Q 041054 76 -------------------------------------------------------------------------------- 75 (298)
Q Consensus 76 -------------------------------------------------------------------------------- 75 (298)
T Consensus 156 ~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~ 235 (351)
T 3utm_A 156 HGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLR 235 (351)
T ss_dssp TSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHH
T ss_pred CCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHH
Confidence
Q ss_pred ----CcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054 76 ----RLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG 148 (298)
Q Consensus 76 ----~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~ 148 (298)
++.+|..|.||||+|+..|+.+++++|+++|++ ++..|..|.||||+|+..++.+++++|++.
T Consensus 236 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~----------~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ 302 (351)
T 3utm_A 236 KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK----------MNALDSLGQTALHRAALAGHLQTCRLLLSY 302 (351)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred cCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 445556666777777777777777777777666 344566777888888888877777776654
No 75
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=1.2e-22 Score=158.41 Aligned_cols=101 Identities=35% Similarity=0.428 Sum_probs=96.6
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV 81 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 81 (298)
.+.++|.+|..|+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus 36 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 111 (136)
T 2jab_A 36 NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDA----IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK 111 (136)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCC
Confidence 4788999999999999999999999999999999999998887 899999999999999999999999999999999
Q ss_pred CCCcHHHHHHhcCcHHHHHHhccCC
Q 041054 82 SGRIPYAVALKHKHGACAALLNPAS 106 (298)
Q Consensus 82 ~g~tpL~~A~~~~~~~~~~~Ll~~g 106 (298)
.|.||||+|+..++.+++++|+++|
T Consensus 112 ~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 112 FGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999999999999999999875
No 76
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.88 E-value=5.9e-23 Score=190.18 Aligned_cols=134 Identities=26% Similarity=0.292 Sum_probs=121.4
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV 81 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 81 (298)
++.++|.+|..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus 234 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~ 309 (437)
T 1n11_A 234 YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK----SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR 309 (437)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT----TCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCS
T ss_pred cCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCC
Confidence 4678888999999999999999999999999999999888777 799999999999999999999999999999999
Q ss_pred CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054 82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT 149 (298)
Q Consensus 82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~ 149 (298)
.|+||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..++.+++++|++.+
T Consensus 310 ~g~t~L~~A~~~g~~~~v~~Ll~~gad----------~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g 367 (437)
T 1n11_A 310 MGYTPLHVASHYGNIKLVKFLLQHQAD----------VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367 (437)
T ss_dssp SCCCHHHHHHHSSCSHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhcCCC----------CCCCCCCCCCHHHHHHHCChHHHHHHHHHCc
Confidence 999999999999999999999999998 4567788999999999999999999888754
No 77
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.88 E-value=1.8e-23 Score=163.07 Aligned_cols=102 Identities=25% Similarity=0.271 Sum_probs=98.1
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCC-CChHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCP-GSTPLHLAARGGSIDCIRELLAWGADRLHRD 80 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~-g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d 80 (298)
.+.++|.+|..|+||||+|+. |+.+++++|+++|++++..+. . |+||||+|+..|+.+++++|+++|++++.+|
T Consensus 34 ~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~----~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d 108 (136)
T 1d9s_A 34 AGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADP----ATLTRPVHDAAREGFLDTLVVLHRAGARLDVCD 108 (136)
T ss_dssp TTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBT----TTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCS
T ss_pred cCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCC----CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence 467899999999999999999 999999999999999999887 7 9999999999999999999999999999999
Q ss_pred cCCCcHHHHHHhcCcHHHHHHhccCCCC
Q 041054 81 VSGRIPYAVALKHKHGACAALLNPASAE 108 (298)
Q Consensus 81 ~~g~tpL~~A~~~~~~~~~~~Ll~~ga~ 108 (298)
..|.||||+|+..++.+++++|+++|++
T Consensus 109 ~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 109 AWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp SSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999999999999875
No 78
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.88 E-value=3.1e-23 Score=175.69 Aligned_cols=126 Identities=19% Similarity=0.100 Sum_probs=59.6
Q ss_pred cCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc-CCCcH
Q 041054 8 IRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV-SGRIP 86 (298)
Q Consensus 8 ~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~-~g~tp 86 (298)
..|..|.||||+|+..|+.+++++|++.|++++..+. .|.||||+|+..|+.+++++|++.|++++..+. .|.||
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~ 79 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDK----ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP 79 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCH
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCC----CCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCCh
Confidence 3444445555555555555555555555544444443 445555555555555555555555544443322 24455
Q ss_pred HHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc
Q 041054 87 YAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK 147 (298)
Q Consensus 87 L~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~ 147 (298)
||+|+..++.+++++|+++|+++ +..+..+.|||+.|+..++.++++.|++
T Consensus 80 L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 130 (240)
T 3eu9_A 80 LHWATRQGHLSMVVQLMKYGADP----------SLIDGEGCSCIHLAAQFGHTSIVAYLIA 130 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHcCCCC----------cccCCCCCCHHHHHHHcCHHHHHHHHHh
Confidence 55555555555555555544442 2233344445555555444444444433
No 79
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.88 E-value=1.8e-23 Score=180.33 Aligned_cols=139 Identities=19% Similarity=0.204 Sum_probs=116.1
Q ss_pred CCCcccCC----CCCCcHHHHHH---HcCChHHHHHHHhCCCCcc-------ccCCCCCCCCChHHHHHHHcCCHHHHHH
Q 041054 3 ARFVNIRD----GRGATPLHLAA---RQRRPECVHILLDSGALVC-------ASTGGYGCPGSTPLHLAARGGSIDCIRE 68 (298)
Q Consensus 3 ~~~vn~~d----~~G~TpLh~Aa---~~g~~~~v~~Ll~~ga~~~-------~~~~~~~~~g~TpLh~A~~~g~~~~v~~ 68 (298)
+.+++..+ ..|+||||+|+ ..|+.++|++|++.|++++ ......|..|+||||+|+..|+.++|++
T Consensus 32 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~ 111 (260)
T 3jxi_A 32 KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVEL 111 (260)
T ss_dssp TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHH
T ss_pred CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 45666554 77999999999 6799999999999986632 2222333479999999999999999999
Q ss_pred HHHcCCCCcccc--------------cCCCcHHHHHHhcCcHHHHHHhcc---CCCCCCCCCCChhhhhHhhHHHHHHHH
Q 041054 69 LLAWGADRLHRD--------------VSGRIPYAVALKHKHGACAALLNP---ASAEPLVWPSPLKFISELNQEAKALLE 131 (298)
Q Consensus 69 Ll~~gad~~~~d--------------~~g~tpL~~A~~~~~~~~~~~Ll~---~ga~~~~~~~~~~~~~~~~~~~~t~L~ 131 (298)
|+++|++++.++ ..|.||||+|+..|+.+++++|++ +|++ ++..|..|.||||
T Consensus 112 Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~----------~~~~d~~g~TpLh 181 (260)
T 3jxi_A 112 LVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD----------LRRQDSRGNTVLH 181 (260)
T ss_dssp HHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC----------TTCCCTTSCCHHH
T ss_pred HHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC----------CcccCCCCCcHHH
Confidence 999999999998 589999999999999999999999 8898 4667889999999
Q ss_pred HHHHhhh---------HHHHHHHhc-CCCC
Q 041054 132 NALMEAN---------KEREKNILK-GTAY 151 (298)
Q Consensus 132 ~A~~~~~---------~~~~~~ll~-~~~~ 151 (298)
+|+..++ .+++++|++ |+++
T Consensus 182 ~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~ 211 (260)
T 3jxi_A 182 ALVAIADNTRENTKFVTKMYDLLLIKCAKL 211 (260)
T ss_dssp HHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence 9997766 577776665 4543
No 80
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.88 E-value=8.5e-23 Score=165.30 Aligned_cols=123 Identities=22% Similarity=0.204 Sum_probs=112.7
Q ss_pred CCcHHHHHHHcCChHHHHHHHhCCCC-ccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHH
Q 041054 13 GATPLHLAARQRRPECVHILLDSGAL-VCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVAL 91 (298)
Q Consensus 13 G~TpLh~Aa~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~ 91 (298)
+.||||+|+..|+.++++.|++.+.+ ++..+. .|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 77 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDE----RGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLAS 77 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCT----TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHH
Confidence 57899999999999999999999877 676666 8999999999999999999999999999999999999999999
Q ss_pred hcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054 92 KHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT 149 (298)
Q Consensus 92 ~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~ 149 (298)
..++.+++++|+++|++ ++..+..|.||||+|+..++.+++++|++.+
T Consensus 78 ~~~~~~~v~~Ll~~g~~----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 125 (172)
T 3v30_A 78 TGGYTDIVGLLLERDVD----------INIYDWNGGTPLLYAVRGNHVKCVEALLARG 125 (172)
T ss_dssp HTTCHHHHHHHHTTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHcCCC----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 99999999999999998 4567788999999999999999999887643
No 81
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.88 E-value=4.3e-23 Score=165.93 Aligned_cols=128 Identities=26% Similarity=0.222 Sum_probs=114.1
Q ss_pred cCCCCCCcHHHHHHHcCChHHHHHHHhC-CCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcH
Q 041054 8 IRDGRGATPLHLAARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIP 86 (298)
Q Consensus 8 ~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp 86 (298)
..|..|.||||.|+..|+.++|+.|++. +.+++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus 3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 78 (165)
T 3twr_A 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG----RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVP 78 (165)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTT----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccccc----CCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCH
Confidence 3577899999999999999999999985 555555555 79999999999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054 87 YAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT 149 (298)
Q Consensus 87 L~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~ 149 (298)
||+|+..++.+++++|+++|++ ++..+..+.||||+|+..++.+++++|++.+
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 131 (165)
T 3twr_A 79 LHNACSYGHYEVAELLVKHGAV----------VNVADLWKFTPLHEAAAKGKYEICKLLLQHG 131 (165)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHcCcHHHHHHHHhCCCC----------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 9999999999999999999998 4556778999999999999999998887653
No 82
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.88 E-value=5.5e-23 Score=163.41 Aligned_cols=122 Identities=26% Similarity=0.272 Sum_probs=112.2
Q ss_pred CCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHh
Q 041054 13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALK 92 (298)
Q Consensus 13 G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~ 92 (298)
..||||.|+..|+.++|++|+++|++++. +. .|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 76 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFTT-DW----LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAAS 76 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCCC-CT----TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCCc-CC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 46899999999999999999999998763 33 79999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054 93 HKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT 149 (298)
Q Consensus 93 ~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~ 149 (298)
.++.+++++|+++|++ ++..+..|.||||+|+..++.+++++|++.+
T Consensus 77 ~~~~~~v~~Ll~~g~~----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 123 (153)
T 1awc_B 77 EGHANIVEVLLKHGAD----------VNAKDMLKMTALHWATEHNHQEVVELLIKYG 123 (153)
T ss_dssp HTCHHHHHHHHTTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cChHHHHHHHHHcCCC----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 9999999999999998 4566788999999999999999999887653
No 83
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.88 E-value=1.1e-22 Score=165.89 Aligned_cols=125 Identities=19% Similarity=0.237 Sum_probs=113.0
Q ss_pred CCCCcHHHHHHHcCChHHHHHHHhC-CCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHH
Q 041054 11 GRGATPLHLAARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAV 89 (298)
Q Consensus 11 ~~G~TpLh~Aa~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~ 89 (298)
..+.++||.|+..|+.++|++|++. +.+++..+. .|+||||+|+..|+.+++++|++.|++++.+|..|.||||+
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDD----HGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHL 78 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCC----CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 4688999999999999999999998 677887776 89999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054 90 ALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT 149 (298)
Q Consensus 90 A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~ 149 (298)
|+..++.+++++|+++|++ ++..+..|.||||+|+..++.+++++|++.+
T Consensus 79 A~~~~~~~~v~~Ll~~g~~----------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 128 (179)
T 3f6q_A 79 AASHGHRDIVQKLLQYKAD----------INAVNEHGNVPLHYACFWGQDQVAEDLVANG 128 (179)
T ss_dssp HHHTTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHcCCC----------CCccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 9999999999999999998 4667788999999999999999999887653
No 84
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.88 E-value=2.8e-23 Score=157.13 Aligned_cols=98 Identities=40% Similarity=0.505 Sum_probs=94.4
Q ss_pred ccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcH
Q 041054 7 NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIP 86 (298)
Q Consensus 7 n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp 86 (298)
..+|.+|+||||+|+..|+.+++++|+++|++++..+. .|+||||+|+..++.+++++|+++|++++.+|..|.||
T Consensus 3 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tp 78 (115)
T 2l6b_A 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK----DGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTP 78 (115)
T ss_dssp -CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCS----SSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCT
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----CCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCH
Confidence 36799999999999999999999999999999998887 89999999999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHhccCCCC
Q 041054 87 YAVALKHKHGACAALLNPASAE 108 (298)
Q Consensus 87 L~~A~~~~~~~~~~~Ll~~ga~ 108 (298)
||+|+..++.+++++|+++|++
T Consensus 79 l~~A~~~~~~~~~~~Ll~~ga~ 100 (115)
T 2l6b_A 79 EHLAKKNGHHEIVKLLDAKGAD 100 (115)
T ss_dssp THHHHTTTCHHHHHHHHTTSSS
T ss_pred HHHHHHCCCHHHHHHHHHcCCC
Confidence 9999999999999999999998
No 85
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.88 E-value=5.5e-23 Score=176.50 Aligned_cols=134 Identities=23% Similarity=0.156 Sum_probs=113.3
Q ss_pred CCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc-cCCCcHHH
Q 041054 10 DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD-VSGRIPYA 88 (298)
Q Consensus 10 d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~tpL~ 88 (298)
+..|.||||+|+..|+.++|++||+ |+++|..+. .|+||||+|+..|+.++|++|+++|++++.+| ..|+||||
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~ 116 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDE----NGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH 116 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCT----TSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCC----CCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHH
Confidence 3578999999999999999999999 999999887 89999999999999999999999999999998 78999999
Q ss_pred HHHhcCcHHHHHHhccCCCCCCCCC----CChhhhhH--hhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054 89 VALKHKHGACAALLNPASAEPLVWP----SPLKFISE--LNQEAKALLENALMEANKEREKNILKG 148 (298)
Q Consensus 89 ~A~~~~~~~~~~~Ll~~ga~~~~~~----~~~~~~~~--~~~~~~t~L~~A~~~~~~~~~~~ll~~ 148 (298)
+|+..|+.+++++|+++|+++.... +|.++... ....+.++|++|+..++.+++++|++.
T Consensus 117 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 117 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHh
Confidence 9999999999999999999975542 23322221 123345677777788999988888763
No 86
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.87 E-value=5.2e-25 Score=187.53 Aligned_cols=139 Identities=19% Similarity=0.140 Sum_probs=120.6
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc-c
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD-V 81 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~ 81 (298)
+.++|.+|..|+||||+|+..|+.++|++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.++ .
T Consensus 44 g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~----~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~ 119 (229)
T 2vge_A 44 MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDS----HGWTPLHCAASCNDTVICMALVQHGAAIFATTLS 119 (229)
T ss_dssp SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSS
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCC
Confidence 678999999999999999999999999999999999999887 89999999999999999999999999999987 5
Q ss_pred CCCcHHHHH--HhcCcHHHHHHhccCCCCCCCCCCC--------------------hh--hhhHhhHHHHHHHHHHHHhh
Q 041054 82 SGRIPYAVA--LKHKHGACAALLNPASAEPLVWPSP--------------------LK--FISELNQEAKALLENALMEA 137 (298)
Q Consensus 82 ~g~tpL~~A--~~~~~~~~~~~Ll~~ga~~~~~~~~--------------------~~--~~~~~~~~~~t~L~~A~~~~ 137 (298)
.|+||||+| +..++.+++++|+++|+++...... .. .++.+|.+|.|||++|+..+
T Consensus 120 ~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g 199 (229)
T 2vge_A 120 DGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHG 199 (229)
T ss_dssp TTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETT
T ss_pred CCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccccccCccccccccccccCCCcccHHHHHHHcC
Confidence 999999999 9999999999999998876543210 00 13455777888888888888
Q ss_pred hHHHHHHH
Q 041054 138 NKEREKNI 145 (298)
Q Consensus 138 ~~~~~~~l 145 (298)
+.++++..
T Consensus 200 ~~~~v~~~ 207 (229)
T 2vge_A 200 QEGYVPRN 207 (229)
T ss_dssp EEEEEEGG
T ss_pred Ccceeehh
Confidence 87766543
No 87
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.87 E-value=2.1e-22 Score=160.18 Aligned_cols=123 Identities=21% Similarity=0.098 Sum_probs=113.4
Q ss_pred CCcHHHHHHHcCChHHHHHHHhC-CCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHH
Q 041054 13 GATPLHLAARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVAL 91 (298)
Q Consensus 13 G~TpLh~Aa~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~ 91 (298)
|.||||+|+..|+.+++++|++. +.+++..+. .|+||||+ +..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~----~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 76 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNR----FGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAA 76 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCT----TSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCC----CCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 56999999999999999999999 447887776 89999999 9999999999999999999999999999999999
Q ss_pred hcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCC
Q 041054 92 KHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTA 150 (298)
Q Consensus 92 ~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~ 150 (298)
..|+.+++++|+++|+++ +..+..|.||||+|+..++.+++++|++.++
T Consensus 77 ~~~~~~~v~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 125 (156)
T 1bd8_A 77 RTGFLDTLKVLVEHGADV----------NVPDGTGALPIHLAVQEGHTAVVSFLAAESD 125 (156)
T ss_dssp HTTCHHHHHHHHHTTCCS----------CCCCTTSCCHHHHHHHHTCHHHHHHHHTTSC
T ss_pred HcCcHHHHHHHHHcCCCC----------CCcCCCCCcHHHHHHHhChHHHHHHHHhccC
Confidence 999999999999999984 5567789999999999999999999987743
No 88
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.87 E-value=7.2e-22 Score=176.83 Aligned_cols=133 Identities=28% Similarity=0.257 Sum_probs=79.5
Q ss_pred cccCCCCCCcHHHHHHHcCChHHHHHHHh-CCCCccccCCC---------------------------------CCCCCC
Q 041054 6 VNIRDGRGATPLHLAARQRRPECVHILLD-SGALVCASTGG---------------------------------YGCPGS 51 (298)
Q Consensus 6 vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~-~ga~~~~~~~~---------------------------------~~~~g~ 51 (298)
.+..+..|.||||+|+..|+.++|++||+ .|++++..+.. .|..|+
T Consensus 161 ~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~ 240 (337)
T 4g8k_A 161 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 240 (337)
T ss_dssp ---CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGC
T ss_pred cccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCC
Confidence 34445555555555555555555555553 35555544320 112567
Q ss_pred hHHHHHHHcCCHHHHHHHHHc-CCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHH
Q 041054 52 TPLHLAARGGSIDCIRELLAW-GADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALL 130 (298)
Q Consensus 52 TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L 130 (298)
||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++|+++.. ++||
T Consensus 241 t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~---------------~~~L 305 (337)
T 4g8k_A 241 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC---------------GDLV 305 (337)
T ss_dssp CHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT---------------CCHH
T ss_pred CHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC---------------CCHH
Confidence 777777777777777777764 677777777777777777777777777777777776421 2367
Q ss_pred HHHHHhhhHHHHHHHhc-CCCCCC
Q 041054 131 ENALMEANKEREKNILK-GTAYSL 153 (298)
Q Consensus 131 ~~A~~~~~~~~~~~ll~-~~~~~~ 153 (298)
++|+..++.+++++|++ |+++..
T Consensus 306 ~~A~~~~~~~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 306 MTARRNYDHSLVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCC--
T ss_pred HHHHHcCCHHHHHHHHHCcCCCCC
Confidence 77777777776666554 444443
No 89
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.87 E-value=5.2e-22 Score=172.25 Aligned_cols=128 Identities=30% Similarity=0.281 Sum_probs=119.0
Q ss_pred CCCCCcHHHHHHHcCChHHHHHHHhC-CCCccccCCCCCCCCChHHHHHHHcCC----HHHHHHHHHcCCCCcccccCCC
Q 041054 10 DGRGATPLHLAARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAARGGS----IDCIRELLAWGADRLHRDVSGR 84 (298)
Q Consensus 10 d~~G~TpLh~Aa~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~g~TpLh~A~~~g~----~~~v~~Ll~~gad~~~~d~~g~ 84 (298)
+..|.||||+|+..|+.+++++|+++ |++++..+. .|.||||+|+..++ .+++++|+++|++++.+|..|.
T Consensus 145 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~ 220 (285)
T 1wdy_A 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN----MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 220 (285)
T ss_dssp TCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCT----TSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSC
T ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCC----CCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCC
Confidence 88899999999999999999999998 999998887 89999999999999 9999999999999999999999
Q ss_pred cHHHHHHhcCcHHHHHHhcc-CCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc-CCCC
Q 041054 85 IPYAVALKHKHGACAALLNP-ASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK-GTAY 151 (298)
Q Consensus 85 tpL~~A~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~-~~~~ 151 (298)
||||+|+..++.+++++|++ +|++ ++..+..|.|||++|+..++.+++++|++ |+++
T Consensus 221 t~L~~A~~~~~~~~v~~Ll~~~g~~----------~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~ 279 (285)
T 1wdy_A 221 TPLILAVEKKHLGLVQRLLEQEHIE----------INDTDSDGKTALLLAVELKLKKIAELLCKRGAST 279 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHSSSCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCS
T ss_pred cHHHHHHHcCCHHHHHHHHhccCCC----------ccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC
Confidence 99999999999999999999 7888 46678899999999999999999888876 4543
No 90
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.87 E-value=1e-21 Score=149.95 Aligned_cols=102 Identities=44% Similarity=0.592 Sum_probs=98.2
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS 82 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~ 82 (298)
+.+++.+|..|.||||+|+..++.+++++|+++|++++..+. .|.||||+|+..++.+++++|+++|++++.+|..
T Consensus 25 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~----~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 100 (126)
T 1n0r_A 25 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK----NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN 100 (126)
T ss_dssp TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCC----CCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCC
Confidence 578899999999999999999999999999999999998887 8999999999999999999999999999999999
Q ss_pred CCcHHHHHHhcCcHHHHHHhccCCCC
Q 041054 83 GRIPYAVALKHKHGACAALLNPASAE 108 (298)
Q Consensus 83 g~tpL~~A~~~~~~~~~~~Ll~~ga~ 108 (298)
|.|||++|+..++.+++++|+++|++
T Consensus 101 g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 101 GRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 99999999999999999999999985
No 91
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.86 E-value=3.9e-22 Score=168.87 Aligned_cols=123 Identities=27% Similarity=0.243 Sum_probs=75.2
Q ss_pred CCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHH
Q 041054 11 GRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVA 90 (298)
Q Consensus 11 ~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A 90 (298)
..|+||||+|+..|+.+++++|++.|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 74 ~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a 149 (240)
T 3eu9_A 74 DLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDG----EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWA 149 (240)
T ss_dssp TTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCC----CCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHH
Confidence 3366666666666666666666666666666554 566666666666666666666666666666666666666666
Q ss_pred HhcCc-HHHHHHhccCCCCCCCCCCChhhhhHhhH-HHHHHHHHHHHhhhHHHHHHHhc
Q 041054 91 LKHKH-GACAALLNPASAEPLVWPSPLKFISELNQ-EAKALLENALMEANKEREKNILK 147 (298)
Q Consensus 91 ~~~~~-~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~-~~~t~L~~A~~~~~~~~~~~ll~ 147 (298)
+..++ .+++++|++.|+++. ..+. .+.||||+|+..++.+++++|++
T Consensus 150 ~~~~~~~~~~~~L~~~~~~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 198 (240)
T 3eu9_A 150 AYRTHSVDPTRLLLTFNVSVN----------LGDKYHKNTALHWAVLAGNTTVISLLLE 198 (240)
T ss_dssp HHHCCSSTTHHHHHHTTCCTT----------CCCTTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHhCChHHHHHHHHhcCCCcc----------hhhccCCCcHHHHHHHcCCHHHHHHHHH
Confidence 64443 566666666666532 2222 44556666666666555554443
No 92
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.86 E-value=1.1e-22 Score=180.14 Aligned_cols=117 Identities=24% Similarity=0.237 Sum_probs=101.4
Q ss_pred CCCccc------CCCCCCcHHHHHHHc---CChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC
Q 041054 3 ARFVNI------RDGRGATPLHLAARQ---RRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWG 73 (298)
Q Consensus 3 ~~~vn~------~d~~G~TpLh~Aa~~---g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g 73 (298)
+.+++. .|..|+||||+|+.. ++.++|++||++|+++|..+. .|+||||+|+..|+.++|++|+++|
T Consensus 174 g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~----~G~TpLh~A~~~g~~~~v~~Ll~~g 249 (301)
T 2b0o_E 174 GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA----DGNTALHYAALYNQPDCLKLLLKGR 249 (301)
T ss_dssp TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 567777 699999999999997 899999999999999999887 8999999999999999999999999
Q ss_pred CCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhH
Q 041054 74 ADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANK 139 (298)
Q Consensus 74 ad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~ 139 (298)
++++.+|..|.|||++|+..++.+++++|+++|++ .+.||||+|+..+..
T Consensus 250 ad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~----------------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 250 ALVGTVNEAGETALDIARKKHHKECEELLEQAQAG----------------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp CCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH----------------TTSSCCC--------
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC----------------CCCChhHHHHhcCCc
Confidence 99999999999999999999999999999988764 357889988877653
No 93
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.86 E-value=9.5e-23 Score=174.30 Aligned_cols=165 Identities=15% Similarity=0.051 Sum_probs=104.2
Q ss_pred CCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHH
Q 041054 10 DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAV 89 (298)
Q Consensus 10 d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~ 89 (298)
+..|.||||.|+..++.+.++.||++|++++... .|.||||+|+..|+.++|++|++.|++++.+|..|.||||+
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~~-----~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~ 76 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-----LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHN 76 (239)
T ss_dssp ----------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCcccCc-----hhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 4579999999999999999999999999998653 68999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC-CCCCCCCCCCCCCCCccccc
Q 041054 90 ALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG-TAYSLPSPSHSDVGADDNIS 168 (298)
Q Consensus 90 A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~-~~~~~~~p~~~~~~~~~~~~ 168 (298)
|+..|+.+++++|+++|++ ++..|..|.||||+|+..++.+++++|++. +++.......
T Consensus 77 A~~~g~~~~v~~Ll~~ga~----------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~---------- 136 (239)
T 1ycs_B 77 AVCAGHTEIVKFLVQFGVN----------VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSD---------- 136 (239)
T ss_dssp HHHHTCHHHHHHHHHHTCC----------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSS----------
T ss_pred HHHcCCHHHHHHHHHcCCC----------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCC----------
Confidence 9999999999999999998 566788899999999999999999988765 4332211100
Q ss_pred ccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCC
Q 041054 169 EASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKP 209 (298)
Q Consensus 169 ~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~ 209 (298)
....-.+|.. ..-||..|...++..++....
T Consensus 137 ---~~t~l~~a~~-------~~~g~~~~~~~Ll~~~a~~~~ 167 (239)
T 1ycs_B 137 ---MQTAADKCEE-------MEEGYTQCSQFLYGVQEKMGI 167 (239)
T ss_dssp ---CCCHHHHCCS-------SSTTCCCHHHHHHHHHHHTTT
T ss_pred ---CcchHHHHHH-------hhhccHHHHHHHHHhhhcccc
Confidence 0011112210 112888899999999887764
No 94
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.86 E-value=4.6e-22 Score=180.68 Aligned_cols=131 Identities=24% Similarity=0.186 Sum_probs=117.0
Q ss_pred ccCCCCCCcHHHHHHHc-CChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCc
Q 041054 7 NIRDGRGATPLHLAARQ-RRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRI 85 (298)
Q Consensus 7 n~~d~~G~TpLh~Aa~~-g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t 85 (298)
+..+..+.|+||+|+.. ++.++|++||++|++++..+.. ..|.||||+|+..|+.++|++|+++|++++.+|..|+|
T Consensus 193 ~l~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~--~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~T 270 (368)
T 3jue_A 193 DLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGG--QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRG 270 (368)
T ss_dssp ----CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTT--TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred ccccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccc--cCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence 33445667899999999 9999999999999999987721 17999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054 86 PYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT 149 (298)
Q Consensus 86 pL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~ 149 (298)
|||+|+..++.+++++|+++|++ ++..|.+|.|||++|+..++.+++++|+...
T Consensus 271 pLh~A~~~g~~~~v~~LL~~Gad----------~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~ 324 (368)
T 3jue_A 271 PLHHATILGHTGLACLFLKRGAD----------LGARDSEGRDPLTIAMETANADIVTLLRLAK 324 (368)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHCcCC----------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999999999 4667889999999999999999999887654
No 95
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.85 E-value=1.7e-21 Score=170.66 Aligned_cols=128 Identities=18% Similarity=0.144 Sum_probs=114.8
Q ss_pred CCcHHHHHHHcCChHHHHHHHhCCCCcccc--CCCCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCcccccCCCcHH
Q 041054 13 GATPLHLAARQRRPECVHILLDSGALVCAS--TGGYGCPGSTPLHLAARG---GSIDCIRELLAWGADRLHRDVSGRIPY 87 (298)
Q Consensus 13 G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~--~~~~~~~g~TpLh~A~~~---g~~~~v~~Ll~~gad~~~~d~~g~tpL 87 (298)
..++|+.|+..|+.+.++.|++.|++++.. ....|..|+||||+|+.. |+.+++++|+++|++++.+|..|+|||
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpL 209 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL 209 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHH
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHH
Confidence 357899999999999999999999997654 222234799999999999 899999999999999999999999999
Q ss_pred HHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCC
Q 041054 88 AVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTA 150 (298)
Q Consensus 88 ~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~ 150 (298)
|+|+..|+.+++++|+++|++ ++..|.+|.|||++|+..++.+++++|++.+.
T Consensus 210 h~A~~~g~~~~v~~Ll~~gad----------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 262 (278)
T 1dcq_A 210 HYCCLTDNAECLKLLLRGKAS----------IEIANESGETPLDIAKRLKHEHCEELLTQALS 262 (278)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHcCCC----------CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 999999999999999999999 46678899999999999999999999887654
No 96
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.85 E-value=3.2e-21 Score=168.86 Aligned_cols=100 Identities=29% Similarity=0.387 Sum_probs=95.7
Q ss_pred cccCCCCCCcHHHHHHHc---CChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054 6 VNIRDGRGATPLHLAARQ---RRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS 82 (298)
Q Consensus 6 vn~~d~~G~TpLh~Aa~~---g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~ 82 (298)
++..|..|+||||+|+.. |+.++|++|+++|+++|.++. .|+||||+|+..|+.++|++|+++|++++.+|..
T Consensus 162 l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~----~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~ 237 (278)
T 1dcq_A 162 LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG----KGSTALHYCCLTDNAECLKLLLRGKASIEIANES 237 (278)
T ss_dssp CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred ccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCC
Confidence 566689999999999999 899999999999999999887 8999999999999999999999999999999999
Q ss_pred CCcHHHHHHhcCcHHHHHHhccCCCCC
Q 041054 83 GRIPYAVALKHKHGACAALLNPASAEP 109 (298)
Q Consensus 83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~ 109 (298)
|.||||+|+..|+.+++++|+++|++.
T Consensus 238 g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 238 GETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 999999999999999999999998874
No 97
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.84 E-value=6.4e-21 Score=143.33 Aligned_cols=95 Identities=33% Similarity=0.429 Sum_probs=85.8
Q ss_pred CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Q 041054 4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSG 83 (298)
Q Consensus 4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g 83 (298)
..++..|.+|.||||+|+..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus 15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~----~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g 90 (110)
T 2zgd_A 15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDK----NGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90 (110)
T ss_dssp -------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred CcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCC
Confidence 44667889999999999999999999999999999998887 89999999999999999999999999999999999
Q ss_pred CcHHHHHHhcCcHHHHHHh
Q 041054 84 RIPYAVALKHKHGACAALL 102 (298)
Q Consensus 84 ~tpL~~A~~~~~~~~~~~L 102 (298)
+||||+|+..++.+++++|
T Consensus 91 ~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 91 KTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CCHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHh
Confidence 9999999999999999987
No 98
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.84 E-value=5.1e-21 Score=169.45 Aligned_cols=129 Identities=19% Similarity=0.156 Sum_probs=114.0
Q ss_pred CCCcHHHHHHHcCChHHHHHHHhCCCCccccCC--CCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCcccccCCCcH
Q 041054 12 RGATPLHLAARQRRPECVHILLDSGALVCASTG--GYGCPGSTPLHLAARG---GSIDCIRELLAWGADRLHRDVSGRIP 86 (298)
Q Consensus 12 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~--~~~~~g~TpLh~A~~~---g~~~~v~~Ll~~gad~~~~d~~g~tp 86 (298)
...++||.|+..|+.+.|+.|++.|++++.... ..+..|+||||+|+.. ++.+++++|+++|++++.+|..|+||
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~Tp 229 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 229 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCH
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 345779999999999999999999999987310 0123799999999997 89999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCC
Q 041054 87 YAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTA 150 (298)
Q Consensus 87 L~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~ 150 (298)
||+|+..|+.+++++|+++|+++ +.+|..|.|||++|+..++.+++++|++.+.
T Consensus 230 Lh~A~~~g~~~~v~~Ll~~gad~----------~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga 283 (301)
T 2b0o_E 230 LHYAALYNQPDCLKLLLKGRALV----------GTVNEAGETALDIARKKHHKECEELLEQAQA 283 (301)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCC----------SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC----------CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC
Confidence 99999999999999999999994 5678889999999999999999998877543
No 99
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.84 E-value=3.5e-21 Score=181.82 Aligned_cols=127 Identities=20% Similarity=0.182 Sum_probs=98.2
Q ss_pred CcHHHHHHHcCChHHHHHHHhCCCCccccCC--CCCCCCChHHHHHHH---cCCHHHHHHHHHcCCCCcccccCCCcHHH
Q 041054 14 ATPLHLAARQRRPECVHILLDSGALVCASTG--GYGCPGSTPLHLAAR---GGSIDCIRELLAWGADRLHRDVSGRIPYA 88 (298)
Q Consensus 14 ~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~--~~~~~g~TpLh~A~~---~g~~~~v~~Ll~~gad~~~~d~~g~tpL~ 88 (298)
.+.||.|+..|+.+.|+.||+.|+++|.... ..|..|+||||+|+. .|+.++|++|+++|+++|.+|..|+||||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh 212 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH 212 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence 3678888888888888888888888876611 112368888888855 78888888888888888888888888888
Q ss_pred HHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCC
Q 041054 89 VALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTA 150 (298)
Q Consensus 89 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~ 150 (298)
+|+..|+.+++++|+++|++ ++..|.+|.||||+|+..++.+++++|++.+.
T Consensus 213 ~A~~~g~~~~v~~Ll~~ga~----------~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga 264 (497)
T 3lvq_E 213 YAALYNQPDCLKLLLKGRAL----------VGTVNEAGETALDIARKKHHKECEELLEQAQA 264 (497)
T ss_dssp HHTTTTCHHHHHHHHHTCCC----------CSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHcCCC----------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence 88888888888888888887 35567778888888888888887777766443
No 100
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.84 E-value=3.2e-22 Score=179.03 Aligned_cols=121 Identities=15% Similarity=-0.012 Sum_probs=108.9
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCC---hHHHHHHHhCC-CCccccCCCCCCCCChHHHHHHH----cCCHHHHHHHHHcC
Q 041054 2 YARFVNIRDGRGATPLHLAARQRR---PECVHILLDSG-ALVCASTGGYGCPGSTPLHLAAR----GGSIDCIRELLAWG 73 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~---~~~v~~Ll~~g-a~~~~~~~~~~~~g~TpLh~A~~----~g~~~~v~~Ll~~g 73 (298)
.|+++|.+|..|+||||+|+..|+ .++++.|++.+ ++++..+. .|+||||+|+. .|+.+++++|++.+
T Consensus 153 ~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~----~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~ 228 (327)
T 1sw6_A 153 HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS----MNRTILHHIIITSGMTGCSAAAKYYLDIL 228 (327)
T ss_dssp TTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECT----TCCCHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred cCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCC----CCCCHHHHHHHHccccccHHHHHHHHHHH
Confidence 578999999999999999999998 78888888886 77888887 89999999999 99999999999874
Q ss_pred C---------------------------------------------CCcccccCCCcHHHHHHhcCcHHHHHHhccCCCC
Q 041054 74 A---------------------------------------------DRLHRDVSGRIPYAVALKHKHGACAALLNPASAE 108 (298)
Q Consensus 74 a---------------------------------------------d~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~ 108 (298)
+ +++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 229 ~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad 308 (327)
T 1sw6_A 229 MGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD 308 (327)
T ss_dssp HHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 3 5788899999999999999999999999999999
Q ss_pred CCCCCCChhhhhHhhHHHHHHHHHHHHh
Q 041054 109 PLVWPSPLKFISELNQEAKALLENALME 136 (298)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~t~L~~A~~~ 136 (298)
++.+|..|+||||+|+..
T Consensus 309 ----------~~~~d~~G~TpL~~A~~~ 326 (327)
T 1sw6_A 309 ----------PFIANKSGLRPVDFGAGL 326 (327)
T ss_dssp ----------TTCCCTTSCCGGGGTCC-
T ss_pred ----------CcccCCCCCCHHHHHHhc
Confidence 466788999999998754
No 101
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.83 E-value=8.8e-21 Score=179.12 Aligned_cols=105 Identities=27% Similarity=0.322 Sum_probs=97.6
Q ss_pred CCCCcccC------CCCCCcHHHHHHH---cCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHc
Q 041054 2 YARFVNIR------DGRGATPLHLAAR---QRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72 (298)
Q Consensus 2 ~~~~vn~~------d~~G~TpLh~Aa~---~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ 72 (298)
.|+++|.+ |..|+||||+|+. .|+.++|++||++|+++|..+. .|+||||+|+..|+.++|++|+++
T Consensus 154 ~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~----~g~TpLh~A~~~g~~~~v~~Ll~~ 229 (497)
T 3lvq_E 154 NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA----DGNTALHYAALYNQPDCLKLLLKG 229 (497)
T ss_dssp TTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCS----SSCCHHHHHTTTTCHHHHHHHHHT
T ss_pred hcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCC----CCCcHHHHHHHcCCHHHHHHHHHc
Confidence 36778877 8999999999976 9999999999999999999988 899999999999999999999999
Q ss_pred CCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCC
Q 041054 73 GADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPL 110 (298)
Q Consensus 73 gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~ 110 (298)
||+++.+|..|+||||+|+..|+.+++++|+++|+++.
T Consensus 230 ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 267 (497)
T 3lvq_E 230 RALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF 267 (497)
T ss_dssp CCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC---
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999854
No 102
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.83 E-value=6.4e-21 Score=145.88 Aligned_cols=90 Identities=29% Similarity=0.337 Sum_probs=84.2
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV 81 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 81 (298)
.+.++|.+|..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus 29 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~----~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~ 104 (123)
T 3aaa_C 29 KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK----HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGP 104 (123)
T ss_dssp TTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred cCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence 4678999999999999999999999999999999999999887 899999999999999999999999999999999
Q ss_pred CCCcHHHHHHhcCc
Q 041054 82 SGRIPYAVALKHKH 95 (298)
Q Consensus 82 ~g~tpL~~A~~~~~ 95 (298)
.|.|||++|...+.
T Consensus 105 ~g~t~l~~A~~~~~ 118 (123)
T 3aaa_C 105 DGLTAFEATDNQAI 118 (123)
T ss_dssp TSCCHHHHCCCHHH
T ss_pred CCCCHHHHhCCHHH
Confidence 99999999954433
No 103
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.83 E-value=2.6e-21 Score=150.79 Aligned_cols=103 Identities=28% Similarity=0.370 Sum_probs=93.3
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV 81 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 81 (298)
++.+++.+|..|+||||+|+..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus 32 ~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~ 107 (137)
T 3c5r_A 32 NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGY----QNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI 107 (137)
T ss_dssp TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCG----GGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence 4678999999999999999999999999999999999998887 899999999999999999999999999999999
Q ss_pred CCCcHHHHHHhcCcHHHHHHhccCCCC
Q 041054 82 SGRIPYAVALKHKHGACAALLNPASAE 108 (298)
Q Consensus 82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~ 108 (298)
.|.|||++|+..+..+++++|.+.+..
T Consensus 108 ~g~tpl~~A~~~~~~~~l~~l~~~~~s 134 (137)
T 3c5r_A 108 FGLRPVDYTDDESMKSLLLLPEKNESS 134 (137)
T ss_dssp TSCCGGGGCCCHHHHHHHSCC------
T ss_pred CCCCHHHHHhhccHHHHHhhccccccC
Confidence 999999999999999999988776553
No 104
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.83 E-value=7.2e-21 Score=160.41 Aligned_cols=106 Identities=24% Similarity=0.223 Sum_probs=92.1
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhC-CCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054 2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD 80 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d 80 (298)
.+.++|.+|..|+||||+|+..|+.++|++|+++ |++++..+. .|+||||+|+..|+.++|++|+++|++++.+|
T Consensus 95 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~----~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~ 170 (222)
T 3ehr_A 95 NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNK----LGDTALHAAAWKGYADIVQLLLAKGARTDLRN 170 (222)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCT----TSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCC
T ss_pred CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccc
Confidence 4678999999999999999999999999999999 999999887 89999999999999999999999999999999
Q ss_pred cCCCcHHHHHHhcCcHHHHHHhccCCCCCCC
Q 041054 81 VSGRIPYAVALKHKHGACAALLNPASAEPLV 111 (298)
Q Consensus 81 ~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~ 111 (298)
..|.|||++|+..++.++++.|+..++....
T Consensus 171 ~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~ 201 (222)
T 3ehr_A 171 IEKKLAFDMATNAACASLLKKKQGTDAVRTL 201 (222)
T ss_dssp TTSCCHHHHCCSHHHHHHHC-----------
T ss_pred CCCCCHHHHhcchhHHHHHHHHhccchhhhc
Confidence 9999999999999999999999999997543
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.82 E-value=2.3e-20 Score=169.56 Aligned_cols=123 Identities=26% Similarity=0.242 Sum_probs=97.8
Q ss_pred CCCCcccCC--CCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 041054 2 YARFVNIRD--GRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79 (298)
Q Consensus 2 ~~~~vn~~d--~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~ 79 (298)
.|+++|..| ..|+||||+|+..|+.++|++||++|+++|..+. .|+||||+|+..|+.++|++|+++|++++.+
T Consensus 222 ~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~----~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~ 297 (368)
T 3jue_A 222 HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS----AGRGPLHHATILGHTGLACLFLKRGADLGAR 297 (368)
T ss_dssp TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC----CCCCHHHHHHHcCcHHHHHHHHHCcCCCCCc
Confidence 478899998 8999999999999999999999999999998887 8999999999999999999999999999999
Q ss_pred ccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHH
Q 041054 80 DVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALM 135 (298)
Q Consensus 80 d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~ 135 (298)
|..|.||||+|+..++.+++++|+..+..... ....+..+.++++.+..
T Consensus 298 d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~-------~~~~~~~~~t~l~i~~~ 346 (368)
T 3jue_A 298 DSEGRDPLTIAMETANADIVTLLRLAKMREAE-------AAQGQAGDETYLDIFRD 346 (368)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------------
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc-------ccccCCCCCCHHHHHHH
Confidence 99999999999999999999999988754211 12345556677766543
No 106
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.82 E-value=3.1e-20 Score=162.20 Aligned_cols=100 Identities=28% Similarity=0.250 Sum_probs=95.3
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCccccc
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLA-WGADRLHRDV 81 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~ 81 (298)
+.+++..|..|+||||+|+..|+.++|++||++|+++|.++. .|+||||+|+..|+.++|++|++ .|++++.+|.
T Consensus 173 g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~----~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~ 248 (276)
T 4hbd_A 173 GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDD----DGSTALMCACEHGHKEIAGLLLAVPSCDISLTDR 248 (276)
T ss_dssp SCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCT
T ss_pred CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC----CCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCC
Confidence 467788899999999999999999999999999999999887 89999999999999999999999 8999999999
Q ss_pred CCCcHHHHHHhcCcHHHHHHhccCC
Q 041054 82 SGRIPYAVALKHKHGACAALLNPAS 106 (298)
Q Consensus 82 ~g~tpL~~A~~~~~~~~~~~Ll~~g 106 (298)
.|.||||+|+..|+.+++++|+++.
T Consensus 249 ~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 249 DGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 9999999999999999999999864
No 107
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.82 E-value=4.1e-20 Score=151.37 Aligned_cols=93 Identities=27% Similarity=0.270 Sum_probs=85.8
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS 82 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~ 82 (298)
+.++|.+|..|+||||+|+..|+.+++++|+++|++++..+.. .|+||||+|+..|+.+++++|+++|++++.+|..
T Consensus 66 ~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~---~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~ 142 (183)
T 3deo_A 66 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR---GGLTALHMAAGYVRPEVVEALVELGADIEVEDER 142 (183)
T ss_dssp TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSS---SSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT
T ss_pred cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCC---CCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCC
Confidence 5689999999999999999999999999999999999988732 7999999999999999999999999999999999
Q ss_pred CCcHHHHHHhcCcHHH
Q 041054 83 GRIPYAVALKHKHGAC 98 (298)
Q Consensus 83 g~tpL~~A~~~~~~~~ 98 (298)
|.||||+|+..++.+.
T Consensus 143 g~tpl~~A~~~~~~~~ 158 (183)
T 3deo_A 143 GLTALELAREILKTTP 158 (183)
T ss_dssp SCCHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHhccCcc
Confidence 9999999998755433
No 108
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.82 E-value=6.6e-21 Score=157.03 Aligned_cols=100 Identities=15% Similarity=0.094 Sum_probs=93.1
Q ss_pred CCCCcccCCCCCCcHHHHHHHcCC------hHHHHHHHhCCCCccccCCCCCCCCC-hHHHHHHHcC-----CHHHHHHH
Q 041054 2 YARFVNIRDGRGATPLHLAARQRR------PECVHILLDSGALVCASTGGYGCPGS-TPLHLAARGG-----SIDCIREL 69 (298)
Q Consensus 2 ~~~~vn~~d~~G~TpLh~Aa~~g~------~~~v~~Ll~~ga~~~~~~~~~~~~g~-TpLh~A~~~g-----~~~~v~~L 69 (298)
.|++||.+|..|+||||+|+..++ .+++++||++|+++|.++. .|+ ||||+|+..+ +.+++++|
T Consensus 64 ~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~----~g~ttpLh~A~~~~~~~~~~~~iv~~L 139 (186)
T 3t8k_A 64 KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYK----PYKIVVFKNIFNYFVDENEMIPLYKLI 139 (186)
T ss_dssp TTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBG----GGTBCTTGGGGGCCSCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCC----CcCchHHHHHHHcCCChhhHHHHHHHH
Confidence 589999999999999999999987 5889999999999999988 899 9999999944 46799999
Q ss_pred HH-cCCCCcccccCCCcHHHHHHhcCcHHHHHHhccC
Q 041054 70 LA-WGADRLHRDVSGRIPYAVALKHKHGACAALLNPA 105 (298)
Q Consensus 70 l~-~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ 105 (298)
++ +|++++.+|..|.||||+|+..++.+++++|.++
T Consensus 140 l~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~ 176 (186)
T 3t8k_A 140 FSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176 (186)
T ss_dssp HTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred HHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 99 9999999999999999999999999999999876
No 109
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.81 E-value=8.9e-20 Score=156.43 Aligned_cols=100 Identities=26% Similarity=0.267 Sum_probs=89.5
Q ss_pred CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054 3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS 82 (298)
Q Consensus 3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~ 82 (298)
+.++|.+|..|+||||+|+..|+.++|++|+++|++++..+.. .|+||||+|+..|+.++|++|+++|++++.+|..
T Consensus 67 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~ 143 (244)
T 3ui2_A 67 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR---GGLTALHMAAGYVRPEVVEALVELGADIEVEDER 143 (244)
T ss_dssp TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSS---SCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence 5689999999999999999999999999999999999988832 7999999999999999999999999999999999
Q ss_pred CCcHHHHHHh----------------cCcHHHHHHhccC
Q 041054 83 GRIPYAVALK----------------HKHGACAALLNPA 105 (298)
Q Consensus 83 g~tpL~~A~~----------------~~~~~~~~~Ll~~ 105 (298)
|.||||+|+. .|+.+++++|+++
T Consensus 144 g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 144 GLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp CCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHh
Confidence 9999999984 4556666666553
No 110
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.80 E-value=1.3e-20 Score=171.69 Aligned_cols=130 Identities=11% Similarity=0.019 Sum_probs=106.5
Q ss_pred cCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCC---cccccCCC
Q 041054 8 IRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADR---LHRDVSGR 84 (298)
Q Consensus 8 ~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~---~~~d~~g~ 84 (298)
.++.+++||||+|+..|+.++|++|+++|+.....+ ..+..|.||||+|+..|+.++|++|+++|+++ +..+.+ .
T Consensus 87 ~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~-~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~ 164 (376)
T 2aja_A 87 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK-VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-Y 164 (376)
T ss_dssp HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC---CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-H
T ss_pred HcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHH-HhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-C
Confidence 355677899999999999999999999998322111 11125789999999999999999999999863 333333 8
Q ss_pred cHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhH--hhHHHHHHHHHHH-HhhhHHHHHHHhcCC
Q 041054 85 IPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISE--LNQEAKALLENAL-MEANKEREKNILKGT 149 (298)
Q Consensus 85 tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~--~~~~~~t~L~~A~-~~~~~~~~~~ll~~~ 149 (298)
||||+|+..|+.+++++|+++|++ +.. .+..|.|||++|+ ..++.+++++|++.+
T Consensus 165 TpLh~Aa~~G~~eiv~~Ll~~ga~----------~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g 222 (376)
T 2aja_A 165 HAFRLAAENGHLHVLNRLCELAPT----------EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP 222 (376)
T ss_dssp HHHHHHHHTTCHHHHHHHHHSCGG----------GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCc----------cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC
Confidence 999999999999999999999997 455 8899999999999 999999999998744
No 111
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.79 E-value=7.5e-20 Score=132.99 Aligned_cols=91 Identities=33% Similarity=0.466 Sum_probs=84.1
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHH
Q 041054 49 PGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKA 128 (298)
Q Consensus 49 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t 128 (298)
.|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..++.+++++|+++|++ ++..|.+|.|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----------~~~~d~~g~t 70 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD----------VNAKDKNGRT 70 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSCC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------CCccCCCCCC
Confidence 389999999999999999999999999999999999999999999999999999999998 4667888999
Q ss_pred HHHHHHHhhhHHHHHHHhcCC
Q 041054 129 LLENALMEANKEREKNILKGT 149 (298)
Q Consensus 129 ~L~~A~~~~~~~~~~~ll~~~ 149 (298)
||++|+..++.+++++|++.+
T Consensus 71 ~l~~A~~~~~~~~~~~Ll~~g 91 (93)
T 1n0q_A 71 PLHLAARNGHLEVVKLLLEAG 91 (93)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcC
Confidence 999999999999999887654
No 112
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.75 E-value=9.6e-20 Score=165.93 Aligned_cols=120 Identities=12% Similarity=0.081 Sum_probs=105.0
Q ss_pred cCCCCCCcHHHHHHHcCChHHHHHHHhCCCCc---cccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcc--cccC
Q 041054 8 IRDGRGATPLHLAARQRRPECVHILLDSGALV---CASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLH--RDVS 82 (298)
Q Consensus 8 ~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~---~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~--~d~~ 82 (298)
..|..|.||||+|+..|+.++|++|+++|+++ +.... ++||||+|+..|+.++|++|+++|++++. .|..
T Consensus 123 ~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~-----~~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~ 197 (376)
T 2aja_A 123 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE-----NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE 197 (376)
T ss_dssp --CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH-----HHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHH
T ss_pred HhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCC-----CCCHHHHHHHCCCHHHHHHHHHcCCccchhccCCC
Confidence 44567889999999999999999999999863 33332 38999999999999999999999999988 8999
Q ss_pred CCcHHHHHH-hcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054 83 GRIPYAVAL-KHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT 149 (298)
Q Consensus 83 g~tpL~~A~-~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~ 149 (298)
|.||||+|+ ..|+.+++++|+++|+ .+.|+|+.|+..++.+++++|++.+
T Consensus 198 g~TpL~~Aa~~~G~~eiv~~Ll~~ga-----------------~~~taL~~Aa~~g~~evv~lL~~~g 248 (376)
T 2aja_A 198 NYYAFRWAAVGRGHHNVINFLLDCPV-----------------MLAYAEIHEFEYGEKYVNPFIARHV 248 (376)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHTTSHH-----------------HHHHHHHCTTTTTTTTHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHhCCC-----------------ccchHHHHHHHCCCHHHHHHHHhcC
Confidence 999999999 9999999999998643 3889999999999999999887653
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.70 E-value=1.2e-17 Score=125.21 Aligned_cols=88 Identities=26% Similarity=0.319 Sum_probs=83.2
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHH
Q 041054 48 CPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAK 127 (298)
Q Consensus 48 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 127 (298)
..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++.+++++|+++|++ ++..+..|.
T Consensus 22 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~----------~~~~d~~g~ 91 (110)
T 2zgd_A 22 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD----------VXAQDKFGK 91 (110)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSC
T ss_pred CccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------ccccccCCC
Confidence 3799999999999999999999999999999999999999999999999999999999998 466788899
Q ss_pred HHHHHHHHhhhHHHHHHH
Q 041054 128 ALLENALMEANKEREKNI 145 (298)
Q Consensus 128 t~L~~A~~~~~~~~~~~l 145 (298)
|||++|+..++.+++++|
T Consensus 92 tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 92 TAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CHHHHHHHHTCHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHh
Confidence 999999999999998876
No 114
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.69 E-value=8.9e-18 Score=126.58 Aligned_cols=96 Identities=27% Similarity=0.355 Sum_probs=87.3
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHH
Q 041054 47 GCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEA 126 (298)
Q Consensus 47 ~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~ 126 (298)
|..|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++.+++++|+++|++ ++..+..|
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------~~~~d~~g 75 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD----------VNARSKDG 75 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC----------TTCCCTTC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC----------CcccCCCC
Confidence 34899999999999999999999999999999999999999999999999999999999998 45667889
Q ss_pred HHHHHHHHHhhhHHHHHHHhc-CCCCC
Q 041054 127 KALLENALMEANKEREKNILK-GTAYS 152 (298)
Q Consensus 127 ~t~L~~A~~~~~~~~~~~ll~-~~~~~ 152 (298)
.|||++|+..++.+++++|++ |+++.
T Consensus 76 ~tpl~~A~~~~~~~~~~~Ll~~ga~~n 102 (115)
T 2l6b_A 76 NTPEHLAKKNGHHEIVKLLDAKGADVN 102 (115)
T ss_dssp CCTTHHHHTTTCHHHHHHHHTTSSSHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCCC
Confidence 999999999999999888876 45443
No 115
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=2.7e-09 Score=72.30 Aligned_cols=49 Identities=20% Similarity=0.652 Sum_probs=43.3
Q ss_pred CCcccccccccccceEEeCCCch-hHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQ-MCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK 235 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~-~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~ 235 (298)
+...|.||++...++.+.||||. +|..|+..+ ..||+||..|...+..+
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~---------------~~CP~CR~~i~~~~~i~ 63 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF---------------QQCPMCRQFVQESFALS 63 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC---------------SSCTTTCCCCCCEECCC
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC---------------CCCCCCCcchhceEEee
Confidence 46789999999999999999999 799999866 78999999999876544
No 116
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.76 E-value=3e-09 Score=71.23 Aligned_cols=53 Identities=28% Similarity=0.531 Sum_probs=44.4
Q ss_pred CCcccccccccccceEEe--CCCch-hHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054 172 DTELCCICFEQVCTIEVQ--DCGHQ-MCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK 235 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~--~CGH~-~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~ 235 (298)
+...|.||++...+..+. ||||. +|..|+..+... ...||+||+.|...+...
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-----------~~~CPiCR~~i~~~i~i~ 62 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-----------NKPCPVCRQPIQMIVLTY 62 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-----------TCCCTTTCCCCCEEEEEE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-----------CCcCCCcCcchhceEeee
Confidence 456899999999999887 99999 599999888432 257999999999877665
No 117
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.74 E-value=4.7e-09 Score=69.98 Aligned_cols=54 Identities=24% Similarity=0.507 Sum_probs=44.1
Q ss_pred CCcccccccccccceEEe--CCCch-hHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEEe
Q 041054 172 DTELCCICFEQVCTIEVQ--DCGHQ-MCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKI 236 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~--~CGH~-~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~~ 236 (298)
....|.||++...+..+. ||||. +|..|+..+.... ..||+||..|...+..+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-----------~~CPiCR~~i~~~i~i~~ 62 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-----------ASCPICKKEIQLVIKVFI 62 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-----------CBCTTTCCBCCEEEEEEE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC-----------CcCCCcCchhhceEEEec
Confidence 356899999998877666 99999 6999999884322 589999999998877653
No 118
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.59 E-value=1e-08 Score=70.70 Aligned_cols=49 Identities=33% Similarity=0.775 Sum_probs=42.6
Q ss_pred CCcccccccccccceEEeCCCch-hHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQ-MCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK 235 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~-~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~ 235 (298)
+...|.||++......+.||||. +|..|+..+ ..||+||..|...+.++
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~~~i~ 72 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV---------------DKCPMCYTVITFKQKIL 72 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC---------------SBCTTTCCBCSEEEECB
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC---------------ccCCCcCcCccCcEEEe
Confidence 45789999999999999999999 899999554 78999999999876544
No 119
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=1e-07 Score=65.29 Aligned_cols=55 Identities=22% Similarity=0.629 Sum_probs=43.6
Q ss_pred cccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 168 SEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 168 ~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
....+...|.||++........+|||.||..|+..+... ......||+||..|..
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~--------~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGET--------SCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSS--------SCSCCCCSSSCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHc--------CCCCCCCCCCCCcCCc
Confidence 344567899999999999888999999999999888331 1234689999988764
No 120
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=5.1e-09 Score=72.45 Aligned_cols=48 Identities=33% Similarity=0.786 Sum_probs=41.5
Q ss_pred CCCcccccccccccceEEeCCCch-hHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEE
Q 041054 171 SDTELCCICFEQVCTIEVQDCGHQ-MCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVV 233 (298)
Q Consensus 171 ~~~~~C~IC~~~~~~~~~~~CGH~-~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~ 233 (298)
.+...|.||++....+.+.||||. +|..|+..+ ..||+||..|...+.
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~~~ 71 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV---------------DKCPMCYTVITFKQK 71 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC---------------SBCTTTCCBCCCCCB
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC---------------CCCccCCceecCcEE
Confidence 345789999999999999999999 899999665 789999999987543
No 121
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.57 E-value=1.8e-08 Score=70.33 Aligned_cols=49 Identities=35% Similarity=0.830 Sum_probs=42.8
Q ss_pred CCcccccccccccceEEeCCCch-hHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQ-MCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK 235 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~-~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~ 235 (298)
+...|.||++...++.+.||||. +|..|+..+ +.||+||..|...+...
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~~~i~ 66 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL---------------QSCPVCRSRVEHVQHVY 66 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC---------------SBCTTTCCBCCEEEECB
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc---------------CcCCCCCchhhCeEEEE
Confidence 34689999999999999999999 799999655 69999999999976554
No 122
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=6.4e-08 Score=66.01 Aligned_cols=50 Identities=22% Similarity=0.537 Sum_probs=41.3
Q ss_pred cCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 170 ASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 170 ~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
..+...|.||++........+|||.||..|+..+. .....||+||..|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~-----------~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGAS-----------WLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCT-----------TCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHH-----------HCCCcCcCcCchhCH
Confidence 34567899999999999999999999999997762 223689999988864
No 123
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=1e-07 Score=64.69 Aligned_cols=51 Identities=27% Similarity=0.722 Sum_probs=41.4
Q ss_pred ccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054 169 EASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL 231 (298)
Q Consensus 169 ~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~ 231 (298)
...+...|.||++.... ...+|||.||..|+..+. .....||+||..|...
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWS-----------DRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSS-----------CCCSSCHHHHHCTTCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHH-----------HCcCcCCCcCCcccCC
Confidence 33456789999999888 889999999999997762 2357899999888743
No 124
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=3.2e-07 Score=64.17 Aligned_cols=49 Identities=24% Similarity=0.518 Sum_probs=41.7
Q ss_pred CCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 171 SDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 171 ~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
.....|.||++........+|||.||..|+..+... ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-----------~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-----------TPRCYICDQPTGG 61 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-----------CSBCSSSCCBCCS
T ss_pred CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-----------CCcCCCcCccccc
Confidence 346789999999999999999999999999888543 2679999999863
No 125
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.40 E-value=1.3e-07 Score=65.65 Aligned_cols=52 Identities=27% Similarity=0.586 Sum_probs=39.6
Q ss_pred CCccccccccccc--ceEEeC--CCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEE
Q 041054 172 DTELCCICFEQVC--TIEVQD--CGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVV 233 (298)
Q Consensus 172 ~~~~C~IC~~~~~--~~~~~~--CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~ 233 (298)
+...|.||++... +..+.| |||.+|..|+..++... ...||.||..+....+
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~----------~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE----------NGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSS----------CSBCTTTCCBCSSCSS
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcC----------CCCCCCCCCccCCCch
Confidence 5678999999762 344555 99999999999885432 2689999998886433
No 126
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=2.4e-07 Score=63.26 Aligned_cols=51 Identities=24% Similarity=0.553 Sum_probs=41.5
Q ss_pred ccCCCcccccccccccceEEe-CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 169 EASDTELCCICFEQVCTIEVQ-DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 169 ~~~~~~~C~IC~~~~~~~~~~-~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
...+...|.||++...+.... +|||.||..|+..+.... ..||+||..|..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 62 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS-----------NRCPKCNIVVHQ 62 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC-----------SSCTTTCCCCCS
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC-----------CcCCCcCcccCc
Confidence 344567899999998887776 999999999998875432 689999988765
No 127
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.38 E-value=4.5e-07 Score=63.80 Aligned_cols=56 Identities=25% Similarity=0.517 Sum_probs=44.3
Q ss_pred cCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 170 ASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 170 ~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
..+...|.||++........+|||.||..|+..+..... .......||.||..+..
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-----~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNR-----NTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSB-----CTTSCBCCTTTCCCCCT
T ss_pred CccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhcc-----CCCCCCCCCCCCCcCCH
Confidence 345678999999998888999999999999988765532 01224789999988874
No 128
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=2.3e-07 Score=62.20 Aligned_cols=50 Identities=30% Similarity=0.784 Sum_probs=41.2
Q ss_pred CCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 171 SDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 171 ~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
.+...|.||++........+|||.+|..|+..+.... ...||.||..|..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~----------~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSS----------SPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTS----------SCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhC----------cCCCCCCCcCCCh
Confidence 4567899999998888889999999999998885322 2679999988764
No 129
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.37 E-value=2.7e-07 Score=71.53 Aligned_cols=48 Identities=27% Similarity=0.589 Sum_probs=40.2
Q ss_pred CcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054 173 TELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL 231 (298)
Q Consensus 173 ~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~ 231 (298)
...|.||++....+...+|||.||..|+..+... ...||+||..|...
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-----------KIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-----------CSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCCceECCCCCCccHHHHHHHHHc-----------CCcCCCCCCcCCCC
Confidence 3579999999999999999999999999877322 36799999998654
No 130
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.34 E-value=3.1e-07 Score=63.09 Aligned_cols=51 Identities=25% Similarity=0.592 Sum_probs=41.4
Q ss_pred ccCCCcccccccccccceEEeC-CCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccc
Q 041054 169 EASDTELCCICFEQVCTIEVQD-CGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228 (298)
Q Consensus 169 ~~~~~~~C~IC~~~~~~~~~~~-CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I 228 (298)
...+...|.||++........+ |||.||..|+..+..... ...||+||..+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~---------~~~CP~Cr~~~ 62 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD---------EHTCPTCHQND 62 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSS---------SSCCSSSCCSS
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcC---------CCcCCCCCCcC
Confidence 3445688999999999999999 999999999988865432 25799999853
No 131
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=3.2e-07 Score=61.88 Aligned_cols=50 Identities=36% Similarity=0.769 Sum_probs=40.1
Q ss_pred cCCCcccccccccccce-------EEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 170 ASDTELCCICFEQVCTI-------EVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 170 ~~~~~~C~IC~~~~~~~-------~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
..+...|.||++..... ...+|||.||..|+..+... ...||+||..|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----------ANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-----------CSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-----------CCCCCCCCCccCc
Confidence 34567899999987664 88899999999999887443 2589999988763
No 132
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.32 E-value=5e-07 Score=64.77 Aligned_cols=50 Identities=26% Similarity=0.613 Sum_probs=41.7
Q ss_pred CCCcccccccccccceEEeC-CCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 171 SDTELCCICFEQVCTIEVQD-CGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 171 ~~~~~C~IC~~~~~~~~~~~-CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
.+...|.||++...+....+ |||.||..|+..+..... ...||.||..+.
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~---------~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD---------EHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCT---------TCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcC---------CCcCcCCCCcCC
Confidence 45689999999999999999 999999999988865432 268999998863
No 133
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.31 E-value=2.8e-07 Score=64.08 Aligned_cols=56 Identities=25% Similarity=0.538 Sum_probs=41.9
Q ss_pred CCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 171 SDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 171 ~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
.+...|.||++........+|||.||..|+..+..... ........||.||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~----~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAV----TSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCS----SSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcc----cCCCCCCcCCCCCCcCCH
Confidence 35678999999988888899999999999965532211 112346789999988764
No 134
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.31 E-value=2.9e-07 Score=62.06 Aligned_cols=50 Identities=30% Similarity=0.698 Sum_probs=40.6
Q ss_pred CCcccccccccccc-eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054 172 DTELCCICFEQVCT-IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV 232 (298)
Q Consensus 172 ~~~~C~IC~~~~~~-~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~ 232 (298)
....|.||++.... +...+|||.+|..|+..+.... ..||.||..+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~ 54 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-----------PTCPLCKVPVESVV 54 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-----------CSTTTTCCCCCCEE
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-----------CcCcCCChhhHhhh
Confidence 35689999999877 5889999999999998764322 57999999998653
No 135
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.31 E-value=3.2e-07 Score=59.03 Aligned_cols=47 Identities=28% Similarity=0.673 Sum_probs=36.8
Q ss_pred CCcccccccccccc---eEEeC-CCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 172 DTELCCICFEQVCT---IEVQD-CGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 172 ~~~~C~IC~~~~~~---~~~~~-CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
+...|.||++.... +...+ |||.||..|+..+. .....||+||..|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~-----------~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL-----------GSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTT-----------TTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHH-----------HcCCcCcCCCCEeE
Confidence 45689999998766 66666 99999999997762 22367999998874
No 136
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=7.1e-07 Score=63.28 Aligned_cols=53 Identities=28% Similarity=0.636 Sum_probs=42.1
Q ss_pred cCCCcccccccccccc----eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 170 ASDTELCCICFEQVCT----IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 170 ~~~~~~C~IC~~~~~~----~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
..+...|.||++.... ....+|||.||..|+..+..... ....||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~--------~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI--------NGVRCPFCSKITRI 68 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS--------SCBCCTTTCCCBCC
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC--------CCcCCCCCCCcccc
Confidence 3456789999999887 88889999999999988865431 23789999987653
No 137
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.29 E-value=3.5e-07 Score=61.11 Aligned_cols=51 Identities=25% Similarity=0.537 Sum_probs=38.3
Q ss_pred CCcccccccc-cccce----EEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054 172 DTELCCICFE-QVCTI----EVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV 232 (298)
Q Consensus 172 ~~~~C~IC~~-~~~~~----~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~ 232 (298)
++..|.||++ ..... ...+|||.+|..|+..+..... ..||.||..+..-.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGA----------GNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTS----------SSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCC----------CcCCCCCCcccccc
Confidence 3568999999 33332 4679999999999988854332 67999999887543
No 138
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.28 E-value=3.6e-07 Score=58.75 Aligned_cols=47 Identities=28% Similarity=0.634 Sum_probs=38.5
Q ss_pred CCcccccccccccc----eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 172 DTELCCICFEQVCT----IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 172 ~~~~C~IC~~~~~~----~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
+...|.||++.... +...+|||.||..|+..+.... ..||+||..|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-----------YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-----------CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-----------CcCCCCCCcCC
Confidence 45789999998754 7889999999999998774433 67999998875
No 139
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.28 E-value=6.9e-07 Score=60.34 Aligned_cols=51 Identities=25% Similarity=0.534 Sum_probs=39.8
Q ss_pred CCCcccccccccc---cceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054 171 SDTELCCICFEQV---CTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV 232 (298)
Q Consensus 171 ~~~~~C~IC~~~~---~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~ 232 (298)
.....|.||++.. ..+...+|||.||..|+..+.... ..||+||..|...+
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-----------KKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-----------SBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-----------CCCcCcCccccCcC
Confidence 3567899997765 456788999999999998875443 46999999887644
No 140
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.28 E-value=6.6e-07 Score=62.02 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=42.6
Q ss_pred CCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054 171 SDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL 231 (298)
Q Consensus 171 ~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~ 231 (298)
.+...|.||++...+....+|||.||..|+..+.... ...||.||..+...
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~----------~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG----------HKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT----------CCBCTTTCCBCSSC
T ss_pred cccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHC----------cCCCCCCcCCCChh
Confidence 3567899999999999999999999999998885432 37899999888643
No 141
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=5.5e-07 Score=63.34 Aligned_cols=57 Identities=26% Similarity=0.533 Sum_probs=43.5
Q ss_pred ccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 169 EASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 169 ~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
...+...|.||++........+|||.+|..|+..+...... ......||+||..+..
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~-----~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSML-----DKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHH-----TTSCCCCTTTCCSSCS
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhc-----CCCCCcCCCCCCccCH
Confidence 34456789999999888888899999999999887554110 0124789999988874
No 142
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.27 E-value=4.6e-07 Score=68.82 Aligned_cols=49 Identities=27% Similarity=0.503 Sum_probs=41.4
Q ss_pred CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
+...|.||++........+|||.||..|+..+..... ..||.||..+..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQV----------FSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTC----------CBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCc----------CCCCCCCccCCC
Confidence 4578999999999999999999999999988765322 589999988864
No 143
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.27 E-value=3.8e-07 Score=60.55 Aligned_cols=52 Identities=31% Similarity=0.652 Sum_probs=41.0
Q ss_pred CCcccccccccccce-------EEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEE
Q 041054 172 DTELCCICFEQVCTI-------EVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVV 234 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~-------~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~ 234 (298)
+...|.||++..... ...+|||.+|..|+..+.... ..||+||..+..-.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKINHKRYH 60 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC-----------SBCTTTCCBCTTTCEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC-----------CCCCCCCccCCcccee
Confidence 356899999987654 788999999999998875442 5899999998764443
No 144
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.26 E-value=3.4e-07 Score=66.81 Aligned_cols=49 Identities=22% Similarity=0.648 Sum_probs=41.9
Q ss_pred CCcccccccccccceEE-eCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 172 DTELCCICFEQVCTIEV-QDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~-~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
+...|.||++....... .+|||.||..|+..+..... ..||.||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~----------~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR----------AQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC----------SBCTTTCCBCCG
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc----------CCCCCCCCcCCH
Confidence 45789999999999888 99999999999988866553 589999998853
No 145
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.26 E-value=3.9e-07 Score=61.93 Aligned_cols=48 Identities=35% Similarity=0.780 Sum_probs=39.3
Q ss_pred CCcccccccccccce-------EEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 172 DTELCCICFEQVCTI-------EVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~-------~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
+...|.||++..... ...+|||.+|..|+..+.... ..||+||..+..
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-----------SBCTTTCCBCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-----------CCCCCCCCccCh
Confidence 467899999987665 889999999999998874432 589999988764
No 146
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.25 E-value=4.8e-07 Score=64.83 Aligned_cols=48 Identities=21% Similarity=0.479 Sum_probs=38.4
Q ss_pred CCcccccccccccc---eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 172 DTELCCICFEQVCT---IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 172 ~~~~C~IC~~~~~~---~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
+...|.||++.... +...+|||.||..|+..+... ...||+||..|..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-----------~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-----------SGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-----------TCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-----------CCcCcCcCccCCC
Confidence 46789999987665 777899999999999887322 2589999988764
No 147
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=6.8e-07 Score=61.29 Aligned_cols=52 Identities=27% Similarity=0.665 Sum_probs=39.4
Q ss_pred ccCCCcccccccccccc---eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054 169 EASDTELCCICFEQVCT---IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL 231 (298)
Q Consensus 169 ~~~~~~~C~IC~~~~~~---~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~ 231 (298)
+......|.||++.... +...+|||.||..|+..+.... ..||+||..|..+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-----------~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-----------KVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-----------SBCTTTCCBCSSC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-----------CcCCCcCcccccc
Confidence 33456789999998643 4455999999999998874432 4799999888754
No 148
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=1.7e-06 Score=57.24 Aligned_cols=48 Identities=25% Similarity=0.650 Sum_probs=38.4
Q ss_pred ccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccc
Q 041054 169 EASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFC 224 (298)
Q Consensus 169 ~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~c 224 (298)
...+...|.||++........+|||.||..|+..+..... ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--------~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC--------GFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCS--------SCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCC--------CCCcCcCC
Confidence 3445688999999999998999999999999988865321 23679987
No 149
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.18 E-value=9.2e-07 Score=69.47 Aligned_cols=50 Identities=24% Similarity=0.536 Sum_probs=42.0
Q ss_pred CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL 231 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~ 231 (298)
+...|.||++.....+..+|||.||..|+..+..... ..||.||..|...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQV----------FSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTC----------CBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCC----------CcCCCCCccCCCC
Confidence 3568999999999999999999999999988865432 5799999887753
No 150
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.17 E-value=3e-07 Score=59.53 Aligned_cols=44 Identities=23% Similarity=0.550 Sum_probs=37.3
Q ss_pred CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
+...|.||++........+|||.||..|+.. ....||+||..+.
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~--------------~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA--------------SGMQCPICQAPWP 48 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS--------------SSSSCSSCCSSSS
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHcc--------------CCCCCCcCCcEee
Confidence 4678999999999999999999999999833 2368999998775
No 151
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.16 E-value=8.6e-07 Score=78.94 Aligned_cols=52 Identities=27% Similarity=0.724 Sum_probs=44.2
Q ss_pred ccCCCcccccccccccceEEeCCCch-hHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054 169 EASDTELCCICFEQVCTIEVQDCGHQ-MCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK 235 (298)
Q Consensus 169 ~~~~~~~C~IC~~~~~~~~~~~CGH~-~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~ 235 (298)
...+...|.||++....+...||||. +|..|+..+ ..||.||..|...+...
T Consensus 291 ~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~---------------~~CP~CR~~i~~~~~i~ 343 (345)
T 3t6p_A 291 RLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL---------------RKCPICRGIIKGTVRTF 343 (345)
T ss_dssp HHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC---------------SBCTTTCCBCCEEEECC
T ss_pred hCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC---------------CcCCCCCCCccCeEEee
Confidence 34456899999999999999999999 899999655 78999999999876543
No 152
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.14 E-value=8.3e-07 Score=61.52 Aligned_cols=49 Identities=20% Similarity=0.550 Sum_probs=37.7
Q ss_pred CCCccccccccccc---ceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 171 SDTELCCICFEQVC---TIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 171 ~~~~~C~IC~~~~~---~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
.+...|.||++... .+...+|||.||..|+..+... ...||+||..|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-----------HDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-----------TCSCTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-----------CCcCcCcCCccCC
Confidence 35678999987654 3466799999999999887422 2589999988765
No 153
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.13 E-value=1.3e-06 Score=78.38 Aligned_cols=53 Identities=32% Similarity=0.704 Sum_probs=43.9
Q ss_pred CcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054 173 TELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK 235 (298)
Q Consensus 173 ~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~ 235 (298)
...|.||++....+...||||.+|..|+..+.... ...||.||..|.......
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~----------~~~CP~CR~~i~~~~~i~ 384 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE----------GQGCPFCRCEIKGTEPIV 384 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHT----------CSBCTTTCCBCCEEEECS
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcC----------CCCCCCCCCccCCceeEe
Confidence 36899999999999999999999999997764322 268999999998865543
No 154
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.11 E-value=1.3e-06 Score=63.52 Aligned_cols=49 Identities=29% Similarity=0.651 Sum_probs=40.4
Q ss_pred CCCcccccccccccceEEe-CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 171 SDTELCCICFEQVCTIEVQ-DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 171 ~~~~~C~IC~~~~~~~~~~-~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
.+...|.||++........ +|||.||..|+..+... ...||.||..+..
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-----------~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-----------KTQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-----------CCBCTTTCCBCCG
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-----------CCCCCCCCCcCCh
Confidence 3457899999998888777 89999999999887432 2689999988875
No 155
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.11 E-value=1.1e-06 Score=60.44 Aligned_cols=49 Identities=29% Similarity=0.683 Sum_probs=38.3
Q ss_pred CCCcccccccccccc---eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 171 SDTELCCICFEQVCT---IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 171 ~~~~~C~IC~~~~~~---~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
.+...|.||++.... +...+|||.||..|+..+.... ..||+||..|..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-----------~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-----------RTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-----------SSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-----------CcCcCcCCcCCC
Confidence 356789999977544 4778999999999998774432 579999988754
No 156
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.09 E-value=1.5e-06 Score=64.22 Aligned_cols=49 Identities=18% Similarity=0.562 Sum_probs=41.1
Q ss_pred CCCcccccccccccceEEe-CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 171 SDTELCCICFEQVCTIEVQ-DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 171 ~~~~~C~IC~~~~~~~~~~-~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
.+...|.||++...+.... +|||.||..|+..+.... ..||.||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-----------KYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-----------SBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-----------CcCcCCCccccc
Confidence 4567899999999888887 999999999998874332 689999998875
No 157
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.08 E-value=2.1e-06 Score=68.55 Aligned_cols=48 Identities=25% Similarity=0.713 Sum_probs=40.5
Q ss_pred CCcccccccccccceEEe-CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 172 DTELCCICFEQVCTIEVQ-DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~-~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
+...|.||++........ +|||.||..|+..+..... ..||.||..|.
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGN----------KECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTC----------CBCTTTCCBCC
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCc----------CCCCCCCCcCC
Confidence 456899999999888777 9999999999988865432 67999999985
No 158
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.06 E-value=7.1e-07 Score=66.82 Aligned_cols=49 Identities=27% Similarity=0.682 Sum_probs=39.9
Q ss_pred CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
+...|.||++........+|||.||..|+..+... ....||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~----------~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEK----------ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCT----------TTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhH----------CcCCCCCCCcccCc
Confidence 45789999999999999999999999999555221 13689999998874
No 159
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=4.1e-06 Score=54.28 Aligned_cols=47 Identities=23% Similarity=0.587 Sum_probs=37.1
Q ss_pred cCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccc
Q 041054 170 ASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFC 224 (298)
Q Consensus 170 ~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~c 224 (298)
..+...|.||++........+|||.||..|+..+.... .....||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL--------ERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSS--------CCSCCCSCC
T ss_pred cccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhc--------CCCCCCCCC
Confidence 34567899999999888889999999999998874321 124689987
No 160
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.03 E-value=3.2e-06 Score=63.54 Aligned_cols=52 Identities=19% Similarity=0.446 Sum_probs=42.8
Q ss_pred cCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054 170 ASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL 231 (298)
Q Consensus 170 ~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~ 231 (298)
..+...|.||++........+|||.||..|+..+..... ..||.||..|...
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG----------HKCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC----------SBCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCC----------CCCCCCCCCcCHH
Confidence 345678999999999989999999999999988755443 3899999888653
No 161
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.03 E-value=1.8e-06 Score=64.11 Aligned_cols=50 Identities=32% Similarity=0.733 Sum_probs=40.6
Q ss_pred CcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 173 TELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 173 ~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
...|.||++........+|||.||..|+..+..... ....||.||..+..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--------~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK--------GPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSS--------SSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCC--------CCCCCcCCCCcCCH
Confidence 457999999988888899999999999988855432 22689999988764
No 162
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.02 E-value=3.1e-06 Score=63.10 Aligned_cols=52 Identities=27% Similarity=0.647 Sum_probs=38.3
Q ss_pred Ccccccccccccc------------------eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 173 TELCCICFEQVCT------------------IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 173 ~~~C~IC~~~~~~------------------~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
...|.||++.... +...+|||.||..|+..+..... ......||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~------~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN------KDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC------CSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc------CCCCCcCCCCCCccCC
Confidence 4589999998643 33789999999999988854322 1234789999977654
No 163
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.95 E-value=2.5e-06 Score=66.27 Aligned_cols=51 Identities=20% Similarity=0.455 Sum_probs=42.2
Q ss_pred ccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 169 EASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 169 ~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
...+...|.||++........+|||.||..|+..+..... ..||.||.+|.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~----------~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGP----------QNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSC----------EECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCC----------CCCCCCCCccc
Confidence 4456689999999999999999999999999988854332 58999998763
No 164
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.94 E-value=4.9e-06 Score=63.56 Aligned_cols=56 Identities=34% Similarity=0.647 Sum_probs=44.7
Q ss_pred CCCcccccccccccce-------EEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEEee
Q 041054 171 SDTELCCICFEQVCTI-------EVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIE 237 (298)
Q Consensus 171 ~~~~~C~IC~~~~~~~-------~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~~~ 237 (298)
.+...|.||++..... ...+|||.||..|+..+... ...||+||..+....+..+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~~~l~~l~ 67 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----------ANTCPTCRKKINHKRYHPIY 67 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-----------CSBCTTTCCBCTTTCEEECB
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-----------CCCCCCCCCcCccccccccc
Confidence 3567899999987765 88999999999999887432 25899999999876666543
No 165
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.92 E-value=9.3e-06 Score=57.23 Aligned_cols=53 Identities=19% Similarity=0.109 Sum_probs=44.9
Q ss_pred ccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 167 ISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 167 ~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
.....+...|.||++-..+.+..+|||.+|..|+..++... ..||+|+..+..
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~-----------~~cP~~~~~l~~ 60 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNS-----------PTDPFNRQMLTE 60 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHC-----------SBCTTTCCBCCG
T ss_pred hhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcC-----------CCCCCCcCCCCh
Confidence 44556788999999999999999999999999998886632 679999988764
No 166
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.92 E-value=5.6e-06 Score=61.94 Aligned_cols=49 Identities=24% Similarity=0.456 Sum_probs=41.5
Q ss_pred CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
+...|.||++...+....+|||.||..|+..+..... ..||.||..|..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMG----------SYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC----------SBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCc----------CcCCCCCCCCCH
Confidence 4578999999999999999999999999988865532 579999988764
No 167
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=1e-05 Score=56.46 Aligned_cols=48 Identities=23% Similarity=0.518 Sum_probs=34.2
Q ss_pred Ccccccccccccc--------------e-EEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054 173 TELCCICFEQVCT--------------I-EVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL 231 (298)
Q Consensus 173 ~~~C~IC~~~~~~--------------~-~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~ 231 (298)
...|.||++.... + ...+|||.|+..|+..+ ......||+||+.+..-
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~W-----------l~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLW-----------VKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHH-----------TTTCCBCTTTCCBCCEE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHH-----------HHhCCCCCCcCCCcchh
Confidence 4567777776533 3 44469999999999887 22336899999887543
No 168
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.87 E-value=1.9e-05 Score=57.42 Aligned_cols=53 Identities=21% Similarity=0.123 Sum_probs=44.3
Q ss_pred ccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 167 ISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 167 ~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
.....+...|.||++-..+.+..+|||.+|..|+..++.. +..||+|+.++..
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-----------~~~cP~~~~~l~~ 75 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-----------SPTDPFNRQTLTE 75 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-----------CSBCSSSCCBCCT
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-----------CCCCCCCCCCCCh
Confidence 3445677899999999999999999999999999888542 3689999988764
No 169
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.85 E-value=2.8e-05 Score=56.29 Aligned_cols=53 Identities=19% Similarity=0.119 Sum_probs=44.3
Q ss_pred ccccCCCcccccccccccceEEeCCC-chhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 167 ISEASDTELCCICFEQVCTIEVQDCG-HQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 167 ~~~~~~~~~C~IC~~~~~~~~~~~CG-H~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
.....++..|.||++-..+.+..+|| |.+|..|+..++.. +..||+|+..+..
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-----------~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-----------DQTDPFNRSPLTM 69 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-----------SCBCTTTCSBCCT
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-----------CCCCCCCCCCCCh
Confidence 34456778999999999999999999 99999999888442 3589999988764
No 170
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.66 E-value=5.3e-06 Score=62.21 Aligned_cols=45 Identities=20% Similarity=0.462 Sum_probs=37.9
Q ss_pred CCcccccccccccceEEe-CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 172 DTELCCICFEQVCTIEVQ-DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~-~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
+...|.||++........ +|||.||..|+..+.. ..||.||..+.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-------------~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-------------TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-------------TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-------------CCCcCCCCcCc
Confidence 457899999999998888 9999999999966621 57999998864
No 171
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.66 E-value=1.8e-05 Score=68.26 Aligned_cols=50 Identities=16% Similarity=0.044 Sum_probs=42.5
Q ss_pred CCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 171 SDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 171 ~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
.+...|.||++-..+++..+|||.+|..|+..+..... ..||+|+.++..
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~----------~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG----------HFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC----------SSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCC----------CCCcCCCCCCch
Confidence 35678999999999999999999999999988876543 349999988864
No 172
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.65 E-value=2.3e-05 Score=62.73 Aligned_cols=53 Identities=19% Similarity=0.435 Sum_probs=43.6
Q ss_pred ccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054 169 EASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL 231 (298)
Q Consensus 169 ~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~ 231 (298)
...+...|.||++...+....+|||.||..|+..+..... ..||.||..|...
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG----------HKCPVDNEILLEN 66 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC----------SBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCC----------CCCCCCccCcchh
Confidence 3445689999999999999999999999999988754432 4899999888763
No 173
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00016 Score=61.16 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=45.4
Q ss_pred ccccCCCcccccccccccceEEe-CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcc--cccccceeE
Q 041054 167 ISEASDTELCCICFEQVCTIEVQ-DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPF--CRSTIAHLV 232 (298)
Q Consensus 167 ~~~~~~~~~C~IC~~~~~~~~~~-~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~--cr~~I~~~~ 232 (298)
+........|.||++...+++.. .|||.||..|+..++... ..+.||. |+..+..--
T Consensus 175 v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~---------~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 175 IEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGY---------TTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp CCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTC---------SCEECSGGGCSCEECGGG
T ss_pred ecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhC---------CCCCCCcccccCcCchhh
Confidence 45566778999999999998875 999999999999986532 1268999 998776433
No 174
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.53 E-value=5.7e-05 Score=55.43 Aligned_cols=46 Identities=24% Similarity=0.475 Sum_probs=34.8
Q ss_pred CCccccccccccc------------------ceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccc
Q 041054 172 DTELCCICFEQVC------------------TIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228 (298)
Q Consensus 172 ~~~~C~IC~~~~~------------------~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I 228 (298)
+.+.|.||++... .+...+|||.|+..|+..+-. .+..||+||+..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-----------~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-----------TRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-----------TCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-----------cCCcCcCCCCcc
Confidence 4567888877643 256689999999999977722 247899999875
No 175
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.46 E-value=6e-05 Score=57.33 Aligned_cols=55 Identities=33% Similarity=0.650 Sum_probs=42.8
Q ss_pred cCCCcccccccccccce-------EEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054 170 ASDTELCCICFEQVCTI-------EVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK 235 (298)
Q Consensus 170 ~~~~~~C~IC~~~~~~~-------~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~ 235 (298)
..+...|.||++..... ...+|||.||..|+..+.... ..||+||..|..--+..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~~~~ 130 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKINHKRYHP 130 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-----------SBCTTTCCBCCGGGEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-----------CCCCCCCCcCChhccee
Confidence 34567899999986654 788999999999998874433 58999999987654433
No 176
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.36 E-value=0.00014 Score=52.08 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=41.5
Q ss_pred CCcccccccccccceEEeC-CCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcc--cccc-cce
Q 041054 172 DTELCCICFEQVCTIEVQD-CGHQMCAQCTLALCCHNKPNPTTACLTPPVCPF--CRST-IAH 230 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~-CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~--cr~~-I~~ 230 (298)
+...|.||++...+.+..+ |||.+|..|+..++..... ......||+ |+.. +..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~-----~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQK-----RKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHT-----TTCCBCCCSTTCCCCCBCG
T ss_pred cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccC-----cCCCCCCCcCcCcccccCH
Confidence 4678999999999999996 9999999999988765310 112367999 9865 543
No 177
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.35 E-value=0.00011 Score=58.93 Aligned_cols=51 Identities=16% Similarity=0.008 Sum_probs=42.6
Q ss_pred CCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054 171 SDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL 231 (298)
Q Consensus 171 ~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~ 231 (298)
++...|.||++-..+++..+|||.+|..|+..+..... ..||+|+.++...
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~----------~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG----------HFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC----------SBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCC----------CCCCCCcCCCChh
Confidence 35678999999999999999999999999988866532 3599999877653
No 178
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.33 E-value=7.7e-05 Score=53.44 Aligned_cols=53 Identities=17% Similarity=0.374 Sum_probs=36.7
Q ss_pred CCcccccccccccceE---EeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcc--cccc
Q 041054 172 DTELCCICFEQVCTIE---VQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPF--CRST 227 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~---~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~--cr~~ 227 (298)
+...|.||++...... ..+|||.||..|+...+...-. .+......||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~---~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIK---EGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHH---HCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhh---cCCcccccCccccCCCC
Confidence 4567999998865432 2489999999999887654210 01123578999 9977
No 179
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.16 E-value=7.2e-05 Score=55.75 Aligned_cols=46 Identities=22% Similarity=0.462 Sum_probs=1.0
Q ss_pred CCcccccccccccc------------------eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccc
Q 041054 172 DTELCCICFEQVCT------------------IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228 (298)
Q Consensus 172 ~~~~C~IC~~~~~~------------------~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I 228 (298)
..+.|.||++.... +...+|||.|+..|+..+ ......||+||...
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~W-----------l~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRW-----------LKTRQVCPLDNREW 110 (117)
T ss_dssp CC-------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHH-----------HHcCCcCCCCCCee
Confidence 45789999987543 233589999999999665 22346899999874
No 180
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.54 E-value=0.0012 Score=45.68 Aligned_cols=49 Identities=16% Similarity=0.440 Sum_probs=35.8
Q ss_pred CCcccccccccc--cceEEeCCC-----chhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 172 DTELCCICFEQV--CTIEVQDCG-----HQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 172 ~~~~C~IC~~~~--~~~~~~~CG-----H~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
+...|.||++.. ......||. |.|...|+..+-.... ...||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~---------~~~CplCr~~~~ 69 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD---------TRCCELCKYEFI 69 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC---------CSBCSSSCCBCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC---------CCCCCCCCCeee
Confidence 467899999754 234568996 9999999877754432 258999997764
No 181
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.43 E-value=0.0031 Score=44.85 Aligned_cols=50 Identities=18% Similarity=0.459 Sum_probs=38.2
Q ss_pred cccccccccc-eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054 176 CCICFEQVCT-IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK 235 (298)
Q Consensus 176 C~IC~~~~~~-~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~ 235 (298)
|-+|--.... ....||.|.||-.|+..+..... ..||.|+.+|.++-...
T Consensus 4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~----------k~Cp~C~~~V~rVe~~~ 54 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGD----------KMCPGCSDPVQRIEQCT 54 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTC----------CBCTTTCCBCSEEEEEE
T ss_pred cCccCCCeEEEeeeccccccHHHHHHHHHHhccC----------CCCcCcCCeeeeeEEec
Confidence 5555544443 47889999999999988755544 68999999999987754
No 182
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.19 E-value=0.0046 Score=54.18 Aligned_cols=88 Identities=23% Similarity=0.343 Sum_probs=48.8
Q ss_pred HHHHHhcCCCC-CCCCCCCCCCCCcccccccCCCcccccccccccc------eEE--eCCCchhHHHHHHHHhhcCCCCC
Q 041054 141 REKNILKGTAY-SLPSPSHSDVGADDNISEASDTELCCICFEQVCT------IEV--QDCGHQMCAQCTLALCCHNKPNP 211 (298)
Q Consensus 141 ~~~~ll~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~------~~~--~~CGH~~C~~C~~~l~~~~~~~~ 211 (298)
+.+-|..--.+ .+|+|........ ..+..+...|.||++.... ... ..|||.|-..|+..+-.......
T Consensus 277 i~eNL~~IL~i~~fP~p~~~~~~~~--~e~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sR 354 (381)
T 3k1l_B 277 IHKNLLRMFDLCYFPMPDWSDGPKL--DEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGK 354 (381)
T ss_dssp HHHHHHHHTTCSSCCCCCGGGCCSC--TTCCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSS
T ss_pred HHHHHHHHhCccccCCCcccccccc--cccccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCcc
Confidence 34444444444 5666654432100 1122356789999976544 222 26999998888866533221111
Q ss_pred CCCCCCCCCCcccccccce
Q 041054 212 TTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 212 ~~~~~~~~~Cp~cr~~I~~ 230 (298)
..-...+-.||+||.+|+.
T Consensus 355 qSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 355 TFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CTTTCCEEECTTTCCEEEG
T ss_pred ccccccCCCCCCCCCcCCc
Confidence 1113445679999998863
No 183
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=94.42 E-value=0.0087 Score=38.89 Aligned_cols=52 Identities=12% Similarity=0.031 Sum_probs=41.6
Q ss_pred cccccccccccceEEe-CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEEe
Q 041054 174 ELCCICFEQVCTIEVQ-DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKI 236 (298)
Q Consensus 174 ~~C~IC~~~~~~~~~~-~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~~ 236 (298)
..|.|+++-..+.+.. +|||.++..|+..+-... ..||+.+.++...-+...
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-----------~~cP~t~~~L~~~~Lip~ 56 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-----------GNDPITNEPLSIEEIVEI 56 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-----------SBCTTTCCBCCGGGCEEC
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-----------CCCcCCcCCCChhhcEEC
Confidence 5799999999999988 899999999998874432 359999988876655543
No 184
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.16 E-value=0.056 Score=36.45 Aligned_cols=49 Identities=24% Similarity=0.619 Sum_probs=35.0
Q ss_pred CCcccccccccccc-eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 172 DTELCCICFEQVCT-IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 172 ~~~~C~IC~~~~~~-~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
....|.||.+.... .....|+|.|=..|+.++.... ....||.||....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~---------~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSN---------AEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTC---------SSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhc---------CCCCCCCCcCcCC
Confidence 45789999987653 3444899999999997773221 1268999996654
No 185
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=93.74 E-value=0.036 Score=35.75 Aligned_cols=49 Identities=20% Similarity=0.533 Sum_probs=33.3
Q ss_pred CCcccccccccccceEEeCCC--c---hhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 172 DTELCCICFEQVCTIEVQDCG--H---QMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CG--H---~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
+...|.||++........||. + .+=..|+..+-.... ...||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~---------~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR---------NTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT---------CSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC---------CCccCCCCCeee
Confidence 567899999875555568854 3 456677766644322 268999997753
No 186
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=83.01 E-value=1.2 Score=30.70 Aligned_cols=50 Identities=26% Similarity=0.641 Sum_probs=39.1
Q ss_pred CCccccccccccc-------ceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054 172 DTELCCICFEQVC-------TIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL 231 (298)
Q Consensus 172 ~~~~C~IC~~~~~-------~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~ 231 (298)
....|.||-+..- .+....|+--+|..|...-....+ ..||.|.+...+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~----------q~CpqCktrYkr~ 71 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGT----------QNCPQCKTRYKRL 71 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSC----------SSCTTTCCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccC----------ccccccCCccccc
Confidence 4579999999843 355666999999999987766666 8999999887654
No 187
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=81.65 E-value=1 Score=30.34 Aligned_cols=56 Identities=20% Similarity=0.420 Sum_probs=34.4
Q ss_pred cCCCcccccccccccceEEeC----CCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccc
Q 041054 170 ASDTELCCICFEQVCTIEVQD----CGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCR 225 (298)
Q Consensus 170 ~~~~~~C~IC~~~~~~~~~~~----CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr 225 (298)
......|.+|.++.-+.-+.. -+|.||-.|....-....+....-.|-..+||.-.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~kCpL~g 71 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVG 71 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCCBCSS
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCccccCC
Confidence 345678999999877654444 48999999986654333322222255556666543
No 188
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=75.27 E-value=1.5 Score=30.95 Aligned_cols=31 Identities=23% Similarity=0.502 Sum_probs=24.4
Q ss_pred Cccccccccc---ccceEEeCCCchhHHHHHHHH
Q 041054 173 TELCCICFEQ---VCTIEVQDCGHQMCAQCTLAL 203 (298)
Q Consensus 173 ~~~C~IC~~~---~~~~~~~~CGH~~C~~C~~~l 203 (298)
+..|.||.+. .+.....+|+|.+|..|+...
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4679999963 344455999999999999875
No 189
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=71.07 E-value=2.5 Score=29.40 Aligned_cols=49 Identities=20% Similarity=0.508 Sum_probs=34.4
Q ss_pred CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV 232 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~ 232 (298)
+..-|..|+-.... .+.=.-|..|..|+-.+ -.....||+|..++-.-+
T Consensus 27 G~~nCKsCWf~~k~-LV~C~dHYLCl~CLtlm-----------L~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 27 GPQFCKSCWFENKG-LVECNNHYLCLNCLTLL-----------LSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp CCCCCCSSCSCCSS-EEECSSCEEEHHHHHHT-----------CSSSSEETTTTEECCCCS
T ss_pred CcccChhhccccCC-eeeecchhhHHHHHHHH-----------HhhccCCcccCCcCCcce
Confidence 45789889766543 23334799999999888 334478999997765443
No 190
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=61.66 E-value=16 Score=23.61 Aligned_cols=48 Identities=19% Similarity=0.402 Sum_probs=32.5
Q ss_pred CcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccc
Q 041054 173 TELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRST 227 (298)
Q Consensus 173 ~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~ 227 (298)
...|.+|.+....+....|...+-..|+. +.-..-....|.|+.|...
T Consensus 12 ~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~-------P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDGTDVLRCTHCAAAFHWRCHF-------PAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCCTTCEECSSSCCEECHHHHC-------TTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCCCeEEECCCCCCceecccCC-------CccCcCCCCCEECccccCC
Confidence 35699999887777777788888888871 1111113456999999753
No 191
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=58.76 E-value=16 Score=23.04 Aligned_cols=50 Identities=20% Similarity=0.405 Sum_probs=31.6
Q ss_pred cCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccc
Q 041054 170 ASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRS 226 (298)
Q Consensus 170 ~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~ 226 (298)
......|.+|......+....|-..+-..|+. +.-.......|.||.|..
T Consensus 8 ~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~-------p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQGGEIILCDTCPRAYHMVCLD-------PDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCCSSEEECSSSSCEEEHHHHC-------TTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCCCcEEECCCCChhhhhhccC-------CCCCCCCCCceECccccc
Confidence 34567899998876555666677666666661 111112345799999975
No 192
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=51.29 E-value=13 Score=30.79 Aligned_cols=49 Identities=24% Similarity=0.619 Sum_probs=34.3
Q ss_pred CCcccccccccccc-eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 172 DTELCCICFEQVCT-IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 172 ~~~~C~IC~~~~~~-~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
....|.+|.+-... .....|+|.+=..|+..+..+. ....||.|+....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~---------~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSN---------AEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTC---------SSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhC---------CCCCCCCCCCCCC
Confidence 35789999887554 3444599999888987763322 2368999997543
No 193
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=51.01 E-value=22 Score=24.15 Aligned_cols=54 Identities=17% Similarity=0.329 Sum_probs=34.9
Q ss_pred CCcccccccccc--cceEEeCCCchhHHHHHHHHhhcCCC--CCCC---CCCCCCCCcccc
Q 041054 172 DTELCCICFEQV--CTIEVQDCGHQMCAQCTLALCCHNKP--NPTT---ACLTPPVCPFCR 225 (298)
Q Consensus 172 ~~~~C~IC~~~~--~~~~~~~CGH~~C~~C~~~l~~~~~~--~~~~---~~~~~~~Cp~cr 225 (298)
....|.||-.-. ......-|+..+=..|+.+++--... .-.. .|...|.|+.|.
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred CCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 456888887443 23344558888888888887444332 2222 278899999993
No 194
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=50.95 E-value=5.5 Score=25.70 Aligned_cols=31 Identities=35% Similarity=0.843 Sum_probs=26.1
Q ss_pred CCcccccccccccceEEeCC-CchhHHHHHHHH
Q 041054 172 DTELCCICFEQVCTIEVQDC-GHQMCAQCTLAL 203 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~C-GH~~C~~C~~~l 203 (298)
+..-|.||.+. +++....| |-.+|..|...+
T Consensus 7 e~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED-ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC-CCEEETTTTSEEECSSHHHHH
T ss_pred CCCeeEEeCCC-CeEEecCCCCceehHHHHHHH
Confidence 45679999998 77999999 666699999888
No 195
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=47.50 E-value=15 Score=27.71 Aligned_cols=56 Identities=20% Similarity=0.312 Sum_probs=36.7
Q ss_pred CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccc
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRST 227 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~ 227 (298)
....|.+|.+..-.+....|-..||..|+...-..............|.||.|+..
T Consensus 62 ~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 62 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 46789999999888888899999999999643110000000002235999999843
No 196
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=46.82 E-value=0.91 Score=35.05 Aligned_cols=46 Identities=20% Similarity=0.511 Sum_probs=33.7
Q ss_pred CCcccccccccc-----cceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccc
Q 041054 172 DTELCCICFEQV-----CTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRST 227 (298)
Q Consensus 172 ~~~~C~IC~~~~-----~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~ 227 (298)
+...|.+|.... ......+|.|.+|..|.... + ....|.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~-----~-----~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAH-----P-----EEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECC-----S-----SSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccccc-----C-----CCCcEeeHHHHHH
Confidence 357899999873 34677889999999888322 1 3356999999854
No 197
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=42.87 E-value=5.2 Score=29.79 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=35.9
Q ss_pred CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccc
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRST 227 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~ 227 (298)
....|.+|.+..-.+....|-..||..|+...-............-.|.|++|+..
T Consensus 56 ~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 56 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 45679999998777777889999999999753100000000001234999999754
No 198
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=40.97 E-value=10 Score=30.59 Aligned_cols=49 Identities=18% Similarity=0.472 Sum_probs=29.8
Q ss_pred CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccc
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRST 227 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~ 227 (298)
....|.+|.+..-.+....|...+-..|+ .|.-.......|.||.|+..
T Consensus 6 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl-------~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 6 NEDWCAVCQNGGDLLCCEKCPKVFHLTCH-------VPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SCSSBTTTCCCEEEEECSSSSCEECTTTS-------SSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCceEEcCCCCCccCCccC-------CCCCCCCCCCCEEeCceeCc
Confidence 45779999887655555566655555554 11111113456999999954
No 199
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=40.71 E-value=12 Score=29.51 Aligned_cols=49 Identities=20% Similarity=0.491 Sum_probs=28.1
Q ss_pred CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccc
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRST 227 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~ 227 (298)
+...|.+|.+..-.+....|...+-..|+ .|.-.......|.||.|+..
T Consensus 3 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~-------~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCH-------VPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCCSSCEECSSSSCEECTTTS-------SSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCCCCCeeeecCCCCcccCcccc-------CCCCCCCCCCCEECccccCc
Confidence 34679999877555555556644444443 11111113456999999954
No 200
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=39.68 E-value=22 Score=31.53 Aligned_cols=65 Identities=17% Similarity=0.378 Sum_probs=43.7
Q ss_pred ccCCCcccccccccccceEEe--CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEE
Q 041054 169 EASDTELCCICFEQVCTIEVQ--DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVV 234 (298)
Q Consensus 169 ~~~~~~~C~IC~~~~~~~~~~--~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~ 234 (298)
+.+...-|.+|.+....+... .|...+|..|+..+-.-.-... ....-.|.|-.|......-++.
T Consensus 89 ~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~-i~~~d~W~Cf~C~p~p~~~ll~ 155 (386)
T 2pv0_B 89 DDGYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGK-VHAMSNWVCYLCLPSSRSGLLQ 155 (386)
T ss_dssp SSSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHH-HHHCSSCCCTTTSSCCEETTEE
T ss_pred CCCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHH-hhccCCceEEEcCCcchHhhhh
Confidence 345567899999988878888 8999999999976631110000 0023459999999876444443
No 201
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=35.83 E-value=46 Score=29.79 Aligned_cols=52 Identities=21% Similarity=0.198 Sum_probs=40.9
Q ss_pred HHHcCChHHHHHHHhCCCCccccCC-----------CCCCCCChHHHHHHHcCCHHHHHHHHHc
Q 041054 20 AARQRRPECVHILLDSGALVCASTG-----------GYGCPGSTPLHLAARGGSIDCIRELLAW 72 (298)
Q Consensus 20 Aa~~g~~~~v~~Ll~~ga~~~~~~~-----------~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ 72 (298)
.+..|+...|+.-+..|.+++-+-. ..| .|.|-+|+|++..+-+++..|+.-
T Consensus 29 gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~-~g~tlvhlair~~r~~~l~~ll~~ 91 (454)
T 3zrh_A 29 GVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFD-VGYTLVHLAIRFQRQDMLAILLTE 91 (454)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCC-TTCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccc-cCchhhhhhhhhhhhhHHHHhhhc
Confidence 3467899999999988887663321 122 699999999999999999999873
No 202
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=35.80 E-value=11 Score=25.55 Aligned_cols=32 Identities=28% Similarity=0.654 Sum_probs=23.0
Q ss_pred ccCCCcccccccccccce----EEeCCCchhHHHHH
Q 041054 169 EASDTELCCICFEQVCTI----EVQDCGHQMCAQCT 200 (298)
Q Consensus 169 ~~~~~~~C~IC~~~~~~~----~~~~CGH~~C~~C~ 200 (298)
...+...|.+|...+... -...||+.+|..|.
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs 52 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCS 52 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGG
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHh
Confidence 334567899998886543 33459999999987
No 203
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.64 E-value=9.2 Score=23.66 Aligned_cols=48 Identities=19% Similarity=0.492 Sum_probs=25.6
Q ss_pred CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccc
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRS 226 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~ 226 (298)
+...|.+|......+....|...+-..|+ . +.-.......|.||.|..
T Consensus 8 ~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl------~-ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKSGQLLMCDTCSRVYHLDCL------D-PPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCSSCCEECSSSSCEECSSSS------S-SCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCCCeEEEcCCCCcceECccC------C-CCcCCCCCCceEChhhhC
Confidence 45779999887544444445544433333 1 100111335788998864
No 204
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=32.07 E-value=30 Score=26.60 Aligned_cols=61 Identities=16% Similarity=0.335 Sum_probs=40.2
Q ss_pred ccCCCcccccccccccceEEe--CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 169 EASDTELCCICFEQVCTIEVQ--DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 169 ~~~~~~~C~IC~~~~~~~~~~--~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
+.+...-|.+|.+....+... .|-..||..|+..+-....... ....-.|.|..|......
T Consensus 75 eDG~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~-i~~~d~W~Cy~C~P~~l~ 137 (159)
T 3a1b_A 75 DDGYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQA-AIKEDPWNCYMCGHKGTY 137 (159)
T ss_dssp TTSSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHH-HHTSSSCCCTTTCSSCEE
T ss_pred CCCCcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHH-HhccCCCEEEecCCccHH
Confidence 344567899999987666666 6999999999977632211000 013456889999865533
No 205
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=31.92 E-value=18 Score=22.74 Aligned_cols=48 Identities=23% Similarity=0.515 Sum_probs=24.9
Q ss_pred CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCcccccc
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRST 227 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~ 227 (298)
....|.+|.+....+....|...+-..|+ . + +.+. ....|.||.|...
T Consensus 8 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl------~-p-pl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDGGELLCCDTCPSSYHIHCL------N-P-PLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCCSSCBCCSSSCCCBCSSSS------S-S-CCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCCCCEEEcCCCCHHHccccc------C-C-CcCcCCCCccCChhhcCc
Confidence 45678999876433333334333322232 1 1 1111 3457999999854
No 206
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=31.68 E-value=9.9 Score=34.17 Aligned_cols=54 Identities=19% Similarity=0.403 Sum_probs=0.0
Q ss_pred CCCcccccccccccc----eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccc
Q 041054 171 SDTELCCICFEQVCT----IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228 (298)
Q Consensus 171 ~~~~~C~IC~~~~~~----~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I 228 (298)
.+...|.+|...... --...||+.+|..|..... +-+.........|-.|...+
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~----~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY----PLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee----eCCCCCCCcCEecHHHHHHH
Confidence 345679999876543 2345599999999985431 11111223346788887654
No 207
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=31.50 E-value=30 Score=22.57 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=29.7
Q ss_pred CCcccccccccc---cceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054 172 DTELCCICFEQV---CTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229 (298)
Q Consensus 172 ~~~~C~IC~~~~---~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~ 229 (298)
+...|.+|.... ..+....|..++=..|+ ..... ......+.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv-----~~~~~--~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCV-----GIMAA--PPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHH-----TCSSC--CCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccC-----CCCcc--CCCCCCEEChhccCchh
Confidence 345688887652 23455567777766666 11111 11235799999987654
No 208
>3bya_B Glutamate [NMDA] receptor subunit zeta-1 peptide; calmodulin, EF hand motif, NR1, N-methyl-D-aspartate recepto glutamate, central nervous system; 1.85A {Homo sapiens} PDB: 2hqw_B
Probab=30.65 E-value=4.6 Score=20.20 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=13.4
Q ss_pred CCcccchhhh-hccCCCCcccc
Q 041054 268 SSFKGLSTSF-SKMGGRGSGRI 288 (298)
Q Consensus 268 ~~~~~~~~~~-~~~~~~~~~~~ 288 (298)
.+|++.+++. ++++.|+|.++
T Consensus 4 asfr~istslass~krrrsskv 25 (26)
T 3bya_B 4 ATFRAITSTLASSFKRRRSSKX 25 (26)
T ss_pred hhHHHHHHHHHHHHHHhhhccc
Confidence 4677777666 45777776553
No 209
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=28.84 E-value=11 Score=23.59 Aligned_cols=49 Identities=18% Similarity=0.482 Sum_probs=26.7
Q ss_pred CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccc
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRST 227 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~ 227 (298)
+...|.+|......+....|...+-..|+ . +.-.......|.||.|...
T Consensus 4 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl------~-ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCL------D-PPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCCSSCEECSSSSCEECGGGS------S-SCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCCCcEEEcCCCCcCEECCcC------C-CCcCCCCCCceEChhccCh
Confidence 45678888876544555555544433444 1 1001113357889998754
No 210
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=24.83 E-value=1.1e+02 Score=27.29 Aligned_cols=48 Identities=17% Similarity=0.172 Sum_probs=38.6
Q ss_pred HHHcCCHHHHHHHHHcCCCCccc--------------ccCCCcHHHHHHhcCcHHHHHHhcc
Q 041054 57 AARGGSIDCIRELLAWGADRLHR--------------DVSGRIPYAVALKHKHGACAALLNP 104 (298)
Q Consensus 57 A~~~g~~~~v~~Ll~~gad~~~~--------------d~~g~tpL~~A~~~~~~~~~~~Ll~ 104 (298)
.+..|+...|+.-+..|.|++.+ -..|.|-+|+|++..+.+++.+|+.
T Consensus 29 gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 29 GVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 34578999999888888776543 1259999999999999999888875
No 211
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=24.79 E-value=33 Score=23.53 Aligned_cols=49 Identities=14% Similarity=0.380 Sum_probs=27.0
Q ss_pred cCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCccccc
Q 041054 170 ASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRS 226 (298)
Q Consensus 170 ~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~ 226 (298)
......|.+|....-.+....|-..+=..|+ .| +.+. ....|.||.|..
T Consensus 22 d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl-------~P-pL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 22 DDSATICRVCQKPGDLVMCNQCEFCFHLDCH-------LP-ALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSSCCSSSCSSSCCEECTTSSCEECTTSS-------ST-TCCCCCSSSCCCCSCCC
T ss_pred CCCCCcCcCcCCCCCEEECCCCCCceecccC-------CC-CCCCCcCCCcCCccccC
Confidence 3456789999987543444444333322222 11 1112 456799999984
No 212
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.26 E-value=3.3 Score=27.71 Aligned_cols=46 Identities=20% Similarity=0.516 Sum_probs=32.9
Q ss_pred CCcccccccccccc-----eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccc
Q 041054 172 DTELCCICFEQVCT-----IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228 (298)
Q Consensus 172 ~~~~C~IC~~~~~~-----~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I 228 (298)
.+-.|..|...... .....|.|.+|..|-+.. +...|.|-+|....
T Consensus 24 ~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~-----------~~~~W~C~VC~k~~ 74 (76)
T 2csz_A 24 SDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQE-----------SNGTWRCKVCSGPS 74 (76)
T ss_dssp CCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEEC-----------STTCEEEHHHHSSC
T ss_pred CccchhhhCccccccccCCCcCcccChhhcccccccC-----------CCCCEEEeeCchhh
Confidence 45689999888654 456679999999997544 22458888887654
No 213
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=23.89 E-value=11 Score=25.42 Aligned_cols=29 Identities=24% Similarity=0.794 Sum_probs=21.5
Q ss_pred CCcccccccccccce----EEeCCCchhHHHHH
Q 041054 172 DTELCCICFEQVCTI----EVQDCGHQMCAQCT 200 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~----~~~~CGH~~C~~C~ 200 (298)
+...|.+|...+... -...||..+|..|.
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs 50 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCS 50 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGG
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHh
Confidence 456799998876543 34459999999998
No 214
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=23.63 E-value=22 Score=22.68 Aligned_cols=48 Identities=17% Similarity=0.352 Sum_probs=25.9
Q ss_pred CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccc
Q 041054 172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRS 226 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~ 226 (298)
+...|.+|.+....+....|...+-..|+ . +.-.......|.||.|..
T Consensus 7 ~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl------~-ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDGGELICCDGCPRAFHLACL------S-PPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCCSSCEECSSCCCEECTTTS------S-SCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCCCCEEEcCCCChhhccccc------C-CCcCcCCCCCeECccccC
Confidence 45678899876544444455544333333 1 100111335789999974
No 215
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=23.41 E-value=17 Score=26.65 Aligned_cols=30 Identities=23% Similarity=0.739 Sum_probs=22.1
Q ss_pred CCcccccccccccce----EEeCCCchhHHHHHH
Q 041054 172 DTELCCICFEQVCTI----EVQDCGHQMCAQCTL 201 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~----~~~~CGH~~C~~C~~ 201 (298)
+...|.+|...+... -...||+.+|..|..
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 356799998876543 444599999999973
No 216
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=22.91 E-value=48 Score=22.54 Aligned_cols=50 Identities=16% Similarity=0.368 Sum_probs=30.0
Q ss_pred CCcccccccccc-----cceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054 172 DTELCCICFEQV-----CTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230 (298)
Q Consensus 172 ~~~~C~IC~~~~-----~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~ 230 (298)
+...|.||.+.. ..+....|.-.+=..|+. . .. -....|.||.|......
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~-p----~~----vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYG-V----PY----IPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHT-C----SS----CCSSCCCCHHHHHHTTS
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCC-C----Cc----cCCCceECccccCccch
Confidence 457899998764 334445566555555551 1 11 12357999999865443
No 217
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=21.60 E-value=66 Score=18.22 Aligned_cols=17 Identities=24% Similarity=0.147 Sum_probs=10.9
Q ss_pred HHHHHHcCChHHHHHHH
Q 041054 17 LHLAARQRRPECVHILL 33 (298)
Q Consensus 17 Lh~Aa~~g~~~~v~~Ll 33 (298)
+..||..|+.+.++.|-
T Consensus 17 iyvA~seGd~etv~~Le 33 (40)
T 1gp8_A 17 MDAAASKGDVETYRKLK 33 (40)
T ss_dssp HHHHHTTSCHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHH
Confidence 34566777777776653
No 218
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=20.58 E-value=48 Score=20.80 Aligned_cols=40 Identities=23% Similarity=0.644 Sum_probs=28.9
Q ss_pred cccccccccccce---EEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccc
Q 041054 174 ELCCICFEQVCTI---EVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFC 224 (298)
Q Consensus 174 ~~C~IC~~~~~~~---~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~c 224 (298)
..|.-|.....+. ....|++.+|.+|=+.+ |... ..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fi--He~L---------h~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFV--HDSL---------HSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTT--TTTS---------CSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHH--Hhhc---------cCCcCC
Confidence 4588888776543 36679999999998776 5543 468776
No 219
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=20.40 E-value=34 Score=26.97 Aligned_cols=47 Identities=15% Similarity=0.369 Sum_probs=23.4
Q ss_pred cccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccc
Q 041054 174 ELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRST 227 (298)
Q Consensus 174 ~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~ 227 (298)
..|.+|.+..-.+....|-..+-..|+ .|.-.......|.||.|+..
T Consensus 3 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl-------~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPGDLVMCNQCEFCFHLDCH-------LPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCSSCCCCTTTCCBCCSTTS-------TTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCCCceeECCCCCchhccccC-------CCCcccCCCCCCCCcCccCC
Confidence 468888876433333333333322232 11111114467999999854
No 220
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.21 E-value=15 Score=24.87 Aligned_cols=29 Identities=21% Similarity=0.726 Sum_probs=21.4
Q ss_pred CCcccccccccccce----EEeCCCchhHHHHH
Q 041054 172 DTELCCICFEQVCTI----EVQDCGHQMCAQCT 200 (298)
Q Consensus 172 ~~~~C~IC~~~~~~~----~~~~CGH~~C~~C~ 200 (298)
+...|.+|...+... -...||..+|..|.
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 456899998876433 33459999999996
No 221
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=20.11 E-value=76 Score=20.56 Aligned_cols=48 Identities=15% Similarity=0.382 Sum_probs=28.4
Q ss_pred CCCcccccccccc-----cceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccc
Q 041054 171 SDTELCCICFEQV-----CTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRST 227 (298)
Q Consensus 171 ~~~~~C~IC~~~~-----~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~ 227 (298)
.+...|.||.+.. ..+....|.-.+=..|+- . .. -....|.|+.|...
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~-~----~~----vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYG-V----PY----IPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHT-C----SS----CCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCC-C----Cc----CCCCCcCCccCcCc
Confidence 3567899997654 344555676666556651 1 11 12346899998753
Done!