BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041055
(526 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 311 bits (796), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 182/471 (38%), Positives = 284/471 (60%), Gaps = 16/471 (3%)
Query: 66 SRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIF 125
S+ LI+ A + TYA + + R +ASGL + +G+++GDV+ + P+S P LA
Sbjct: 37 SKPCLINGANGDVYTYADVELTARRVASGL-NKIGIQQGDVIMLFLPSS---PEFVLAFL 92
Query: 126 SL---GAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKV--NVPIIVTSRDQS 180
GAI++ AN +T +E+ K + S AKL+I+ + +K+ + V D +
Sbjct: 93 GASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSA 152
Query: 181 NNKSVSVEELIECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIM--Q 238
+ + EL + + +E P ++ DD A+ YSSGTTG KGV+LTH I+ + Q
Sbjct: 153 PDGCLHFSELTQADE--NEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQ 210
Query: 239 LLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTY 298
+ ++ D+ LC++PMFHIY L G I++M +F++ +++ I+ Y
Sbjct: 211 VDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKY 270
Query: 299 QVNNIPLVPPVILGLVKYCK-DSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGY 357
+V+ P+VPPV++ + K D L+SLR + SG APL KEL D RAKFP L QGY
Sbjct: 271 KVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGY 330
Query: 358 GLTESCG--ATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSP 415
G+TE+ A + + + G+CG + K+VD ET +LP Q GE+ ++
Sbjct: 331 GMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGD 390
Query: 416 TIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELE 475
IM+GY + EAT+ D++GWL TGD+ Y D + L+IVDR+KELIK+ G+QVAPAELE
Sbjct: 391 QIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELE 450
Query: 476 AVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQL 526
A+L++HP I DAAV+ L+DE+AG++P+A+VV++ SQ TED++ Q+++ Q+
Sbjct: 451 ALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQV 501
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 305 bits (781), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 180/476 (37%), Positives = 281/476 (59%), Gaps = 18/476 (3%)
Query: 66 SRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIF 125
++ LI+ T TY+ +H R +A+ +H LGV + DVV +L PN + LA
Sbjct: 76 TKPCLINGPTGHVYTYSDVHVISRQIAAN-FHKLGVNQNDVVMLLLPNCPEFVLSFLAAS 134
Query: 126 SLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKV--NVPIIVTSRDQSNNK 183
GA + AN T +EI KQ + S KLII+ + + K+ + + +++ D +N+
Sbjct: 135 FRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCID--DNE 192
Query: 184 SVSVEE--------LIECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFIS 235
SV + E +A++ + +++ DD A+ YSSGTTG KGV+LTH ++
Sbjct: 193 SVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVT 252
Query: 236 IM--QLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIE 293
+ Q+ ++ +D+ LC++PMFHIY L G I++M +F++ ++E
Sbjct: 253 SVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLE 312
Query: 294 AIKTYQVNNIPLVPPVILGLVKYCKDSSY-LTSLRRVGSGAAPLSKELADEFRAKFPWVE 352
I+ +V P+VPP++L + K + Y L+S+R V SGAAPL KEL D AKFP +
Sbjct: 313 LIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAK 372
Query: 353 LRQGYGLTESCG--ATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGEL 410
L QGYG+TE+ A + + + +SG+CG + K+VD +T +L Q GE+
Sbjct: 373 LGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEI 432
Query: 411 WLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVA 470
++ IM+GY N ATA D+DGWL TGD+ D + L+IVDR+KELIK+ G+QVA
Sbjct: 433 CIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVA 492
Query: 471 PAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQL 526
PAELEA+L+ HP+I D AV+ +++E AG++P+A+VV++ S+L+ED V QFV+ Q+
Sbjct: 493 PAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQV 548
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 275 bits (702), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 171/490 (34%), Positives = 260/490 (53%), Gaps = 53/490 (10%)
Query: 68 VALIDSATHERVTYAQ-------LHRSIRSLASGLYHALGVRKGDVVFVLAPNSL-LYPS 119
+A D+ +TY++ L +++ GL H + V + NSL +
Sbjct: 74 IAFTDAHAEVNITYSEYFEMACRLAETMKRYGLGLQHHIAV--------CSENSLQFFMP 125
Query: 120 ICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKV--NVPII---- 173
+C A+F +G ++P N I E E+ + S ++ + LQK+ V +PII
Sbjct: 126 VCGALF-IGVGVAPTNDIYNERELYNSLSISQPTIVFCSKRALQKILGVQKKLPIIQKIV 184
Query: 174 -VTSRDQSNNKSVSVEELIEC-----CDAADELPGCQLTQDDTAAILYSSGTTGTSKGVI 227
+ SR+ K S+ IE + D +P + TA I+ SSG+TG KGV
Sbjct: 185 ILDSREDYMGKQ-SMYSFIESHLPAGFNEYDYIPDSFDRETATALIMNSSGSTGLPKGVE 243
Query: 228 LTHANFISIMQLLRWTVDVTHAQNDIF----------LCMIPMFHIYGLAFFATGLFCCG 277
LTH N V +H ++ +F L +IP H +G+ F G CG
Sbjct: 244 LTHKNI---------CVRFSHCRDPVFGNQIIPDTAILTVIPFHHGFGM-FTTLGYLTCG 293
Query: 278 VTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSY-LTSLRRVGSGAAPL 336
IV+M RF+ + + +++ Y++ + LVP + K Y L++L + SG APL
Sbjct: 294 FRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLVDKYDLSNLHEIASGGAPL 353
Query: 337 SKELADEFRAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDT 396
+KE+ + +F +RQGYGLTE+ A +++P+ + G+CG + P F AK+VD
Sbjct: 354 AKEVGEAVAKRFKLPGIRQGYGLTETTSA--IIITPRGRDDKPGACGKVVPFFSAKIVDL 411
Query: 397 ETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVD 456
+T L QRGEL +K P IM+GY N EAT+A D+DGWL +GD+ Y+D +G+ +IVD
Sbjct: 412 DTGKTLGVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAYYDKDGYFFIVD 471
Query: 457 RIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTED 516
R+K LIK+ GYQV PAELE++LL HP I DA V + D +AG++P A VV G +TE
Sbjct: 472 RLKSLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAVVVLEEGKTMTEQ 531
Query: 517 QVMQFVTSQL 526
+VM +V Q+
Sbjct: 532 EVMDYVAGQV 541
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 261 bits (667), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 166/486 (34%), Positives = 251/486 (51%), Gaps = 36/486 (7%)
Query: 63 LAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICL 122
L +A D+ +TYA+ LA + G+ + V + NSL + L
Sbjct: 35 LVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAM-KRYGLNTNHRIVVCSENSLQFFMPVL 93
Query: 123 AIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKV--NVPIIV------ 174
+G ++PAN I E E++ + S ++ + + LQK+ V +PII
Sbjct: 94 GALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMD 153
Query: 175 TSRDQSNNKSVSV---EELIECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHA 231
+ D +S+ L + D +P A I+ SSG+TG KGV L H
Sbjct: 154 SKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHR 213
Query: 232 NFISIMQLLRWTVDVTHAQNDIF----------LCMIPMFHIYGLAFFATGLFCCGVTIV 281
V +HA++ IF L ++P H +G+ F G CG +V
Sbjct: 214 T---------ACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGM-FTTLGYLICGFRVV 263
Query: 282 VMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSY-LTSLRRVGSGAAPLSKEL 340
+M RF+ + + +++ Y++ + LVP + K Y L++L + SG APLSKE+
Sbjct: 264 LMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEV 323
Query: 341 ADEFRAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRL 400
+ +F +RQGYGLTE+ A +++P + + G+ G + P F AKVVD +T
Sbjct: 324 GEAVAKRFHLPGIRQGYGLTETTSA--ILITP-EGDDKPGAVGKVVPFFEAKVVDLDTGK 380
Query: 401 ALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKE 460
L QRGEL ++ P IM GY N EAT A D+DGWL +GD+ Y+D + +IVDR+K
Sbjct: 381 TLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKS 440
Query: 461 LIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQ 520
LIK+ GYQVAPAELE++LL HPNI DA V L D++AG++P A VV G +TE +++
Sbjct: 441 LIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVD 500
Query: 521 FVTSQL 526
+V SQ+
Sbjct: 501 YVASQV 506
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 261 bits (667), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 166/486 (34%), Positives = 251/486 (51%), Gaps = 36/486 (7%)
Query: 63 LAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICL 122
L +A D+ +TYA+ LA + G+ + V + NSL + L
Sbjct: 35 LVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAM-KRYGLNTNHRIVVCSENSLQFFMPVL 93
Query: 123 AIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKV--NVPIIV------ 174
+G ++PAN I E E++ + S ++ + + LQK+ V +PII
Sbjct: 94 GALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMD 153
Query: 175 TSRDQSNNKSVSV---EELIECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHA 231
+ D +S+ L + D +P A I+ SSG+TG KGV L H
Sbjct: 154 SKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHR 213
Query: 232 NFISIMQLLRWTVDVTHAQNDIF----------LCMIPMFHIYGLAFFATGLFCCGVTIV 281
V +HA++ IF L ++P H +G+ F G CG +V
Sbjct: 214 T---------ACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGM-FTTLGYLICGFRVV 263
Query: 282 VMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSY-LTSLRRVGSGAAPLSKEL 340
+M RF+ + + +++ Y++ + LVP + K Y L++L + SG APLSKE+
Sbjct: 264 LMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEV 323
Query: 341 ADEFRAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRL 400
+ +F +RQGYGLTE+ A +++P + + G+ G + P F AKVVD +T
Sbjct: 324 GEAVAKRFHLPGIRQGYGLTETTSA--ILITP-EGDDKPGAVGKVVPFFEAKVVDLDTGK 380
Query: 401 ALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKE 460
L QRGEL ++ P IM GY N EAT A D+DGWL +GD+ Y+D + +IVDR+K
Sbjct: 381 TLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKS 440
Query: 461 LIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQ 520
LIK+ GYQVAPAELE++LL HPNI DA V L D++AG++P A VV G +TE +++
Sbjct: 441 LIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVD 500
Query: 521 FVTSQL 526
+V SQ+
Sbjct: 501 YVASQV 506
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 261 bits (667), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 166/486 (34%), Positives = 251/486 (51%), Gaps = 36/486 (7%)
Query: 63 LAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICL 122
L +A D+ +TYA+ LA + G+ + V + NSL + L
Sbjct: 40 LVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAM-KRYGLNTNHRIVVCSENSLQFFMPVL 98
Query: 123 AIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKV--NVPIIV------ 174
+G ++PAN I E E++ + S ++ + + LQK+ V +PII
Sbjct: 99 GALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMD 158
Query: 175 TSRDQSNNKSVSV---EELIECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHA 231
+ D +S+ L + D +P A I+ SSG+TG KGV L H
Sbjct: 159 SKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHR 218
Query: 232 NFISIMQLLRWTVDVTHAQNDIF----------LCMIPMFHIYGLAFFATGLFCCGVTIV 281
V +HA++ IF L ++P H +G+ F G CG +V
Sbjct: 219 T---------ACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGM-FTTLGYLICGFRVV 268
Query: 282 VMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSY-LTSLRRVGSGAAPLSKEL 340
+M RF+ + + +++ Y++ + LVP + K Y L++L + SG APLSKE+
Sbjct: 269 LMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEV 328
Query: 341 ADEFRAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRL 400
+ +F +RQGYGLTE+ A +++P + + G+ G + P F AKVVD +T
Sbjct: 329 GEAVAKRFHLPGIRQGYGLTETTSA--ILITP-EGDDKPGAVGKVVPFFEAKVVDLDTGK 385
Query: 401 ALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKE 460
L QRGEL ++ P IM GY N EAT A D+DGWL +GD+ Y+D + +IVDR+K
Sbjct: 386 TLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKS 445
Query: 461 LIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQ 520
LIK+ GYQVAPAELE++LL HPNI DA V L D++AG++P A VV G +TE +++
Sbjct: 446 LIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVD 505
Query: 521 FVTSQL 526
+V SQ+
Sbjct: 506 YVASQV 511
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 254 bits (648), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 165/486 (33%), Positives = 249/486 (51%), Gaps = 36/486 (7%)
Query: 63 LAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICL 122
L +A D+ +TYA+ LA + G+ + V + NSL + L
Sbjct: 40 LVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-YGLNTNHRIVVSSENSLQFFMPVL 98
Query: 123 AIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKV--NVPIIV------ 174
+G ++PAN E E++ + S ++ + + LQK+ V +PII
Sbjct: 99 GALFIGVAVAPANDCYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMD 158
Query: 175 TSRDQSNNKSVSV---EELIECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHA 231
+ D +S+ L + D +P A I+ SSG+TG KGV L H
Sbjct: 159 SKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHR 218
Query: 232 NFISIMQLLRWTVDVTHAQNDIF----------LCMIPMFHIYGLAFFATGLFCCGVTIV 281
V +HA++ IF L ++P H +G+ F G G +V
Sbjct: 219 AL---------AVRFSHARDPIFGNQIAPDTAILSVVPFHHGFGM-FTTLGYLISGFRVV 268
Query: 282 VMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSY-LTSLRRVGSGAAPLSKEL 340
+M RF+ + + +++ Y++ + LVP + L K Y L++L + SG APLSKE+
Sbjct: 269 LMYRFEEELFLRSLQDYKIQSALLVPTLFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEV 328
Query: 341 ADEFRAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRL 400
+ +F +RQGYGLTE+ A +++PK + G+ G + P F AKVVD +T
Sbjct: 329 GEAVAKRFHLPGIRQGYGLTETTSA--ILITPK-GDDKPGAVGKVVPFFEAKVVDLDTGK 385
Query: 401 ALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKE 460
L QRGEL ++ P IM GY N EAT A D+DGWL +GD+ Y+D + +IVDR+K
Sbjct: 386 TLGVNQRGELSVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKS 445
Query: 461 LIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQ 520
LIK+ G QVAPAELE++LL HPNI DA V L D++AG++P A VV G +TE +++
Sbjct: 446 LIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVD 505
Query: 521 FVTSQL 526
+V SQ+
Sbjct: 506 YVASQV 511
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 252 bits (644), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 152/429 (35%), Positives = 236/429 (55%), Gaps = 37/429 (8%)
Query: 121 CLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQS 180
+A +G ++P N I T E+V + S ++ S+ + L K+ V +
Sbjct: 94 VIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVI 153
Query: 181 NNKSVSVEELIECCDA---ADELPGCQLT---------QDDTAAILYSSGTTGTSKGVIL 228
+ V +C D + PG Q + ++ A I+ SSG+TG KGV L
Sbjct: 154 LDSKVDYRGY-QCLDTFIKRNTPPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQL 212
Query: 229 THANFISIMQLLRWTVDVTHAQNDIF----------LCMIPMFHIYGLAFFATGLFCCGV 278
TH N ++ R++ HA++ I+ L ++P H +G+ F G CG
Sbjct: 213 THENIVT-----RFS----HARDPIYGNQVSPGTAVLTVVPFHHGFGM-FTTLGYLICGF 262
Query: 279 TIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSY-LTSLRRVGSGAAPLS 337
+V++ +FD + ++ ++ Y+ N+ LVP + L K + Y L++L + SG APLS
Sbjct: 263 RVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLS 322
Query: 338 KELADEFRAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTE 397
KE+ + +F +RQGYGLTE+ A +++P + + G+ G + P F AKV+D +
Sbjct: 323 KEVGEAVARRFNLPGVRQGYGLTETTSA--IIITP-EGDDKPGASGKVVPLFKAKVIDLD 379
Query: 398 TRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDR 457
T+ +L P +RGE+ +K P +M+GY N EAT DE+GWL TGD+ Y+D E +IVDR
Sbjct: 380 TKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDR 439
Query: 458 IKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQ 517
+K LIK+ GYQV PAELE+VLL HP+I DA V + D AG++P A VV +G +TE +
Sbjct: 440 LKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKE 499
Query: 518 VMQFVTSQL 526
VM +V SQ+
Sbjct: 500 VMDYVASQV 508
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 250 bits (639), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 159/482 (32%), Positives = 253/482 (52%), Gaps = 38/482 (7%)
Query: 68 VALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSL 127
+A ++ T +YA+ L L + V G + + + +F +
Sbjct: 42 IAFTNAVTGVDYSYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLF-I 100
Query: 128 GAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSV 187
G ++P N I T E+V + S ++ S+ + L K+ V + + V
Sbjct: 101 GVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDY 160
Query: 188 EELIECCDA---ADELPGCQLT---------QDDTAAILYSSGTTGTSKGVILTHANFIS 235
+C D + PG Q + ++ A I+ SSG+TG KGV LTH N ++
Sbjct: 161 RGY-QCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVT 219
Query: 236 IMQLLRWTVDVTHAQNDIF----------LCMIPMFHIYGLAFFATGLFCCGVTIVVMQR 285
R++ HA++ I+ L ++P H +G+ F G CG +V++ +
Sbjct: 220 -----RFS----HARDPIYGNQVSPGTAVLTVVPFHHGFGM-FTTLGYLICGFRVVMLTK 269
Query: 286 FDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSY-LTSLRRVGSGAAPLSKELADEF 344
FD + ++ ++ Y+ ++ LVP + L K + Y L++L + SG APLSKE+ +
Sbjct: 270 FDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAV 329
Query: 345 RAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPP 404
+F +RQGYGLTE+ A +++P + + G+ G + P F AKV+D +T+ +L P
Sbjct: 330 ARRFNLPGVRQGYGLTETTSA--IIITP-EGDDKPGASGKVVPLFKAKVIDLDTKKSLGP 386
Query: 405 YQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKH 464
+RGE+ +K P +M+GY N EAT DE+GWL TGD+ Y+D E +IVDR+K LIK+
Sbjct: 387 NRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKY 446
Query: 465 NGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTS 524
GYQV PAELE+VLL HP+I DA V + D AG++P A VV +G +TE +VM +V S
Sbjct: 447 KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVAS 506
Query: 525 QL 526
Q+
Sbjct: 507 QV 508
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 250 bits (638), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 151/429 (35%), Positives = 236/429 (55%), Gaps = 37/429 (8%)
Query: 121 CLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQS 180
+A +G ++P N I T E+V + S ++ S+ + L K+ V +
Sbjct: 94 VIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVI 153
Query: 181 NNKSVSVEELIECCDA---ADELPGCQLT---------QDDTAAILYSSGTTGTSKGVIL 228
+ V +C D + PG Q + ++ A I+ SSG+TG KGV L
Sbjct: 154 LDSKVDYRGY-QCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQL 212
Query: 229 THANFISIMQLLRWTVDVTHAQNDIF----------LCMIPMFHIYGLAFFATGLFCCGV 278
TH N ++ R++ HA++ I+ L ++P H +G+ F G CG
Sbjct: 213 THENIVT-----RFS----HARDPIYGNQVSPGTAVLTVVPFHHGFGM-FTTLGYLICGF 262
Query: 279 TIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSY-LTSLRRVGSGAAPLS 337
+V++ +FD + ++ ++ Y+ ++ LVP + L K + Y L++L + SG APLS
Sbjct: 263 RVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLS 322
Query: 338 KELADEFRAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTE 397
KE+ + +F +RQGYGLTE+ A +++P + + G+ G + P F AKV+D +
Sbjct: 323 KEVGEAVARRFNLPGVRQGYGLTETTSA--IIITP-EGDDKPGASGKVVPLFKAKVIDLD 379
Query: 398 TRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDR 457
T+ +L P +RGE+ +K P +M+GY N EAT DE+GWL TGD+ Y+D E +IVDR
Sbjct: 380 TKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDR 439
Query: 458 IKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQ 517
+K LIK+ GYQV PAELE+VLL HP+I DA V + D AG++P A VV +G +TE +
Sbjct: 440 LKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKE 499
Query: 518 VMQFVTSQL 526
VM +V SQ+
Sbjct: 500 VMDYVASQV 508
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 206 bits (523), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 154/469 (32%), Positives = 248/469 (52%), Gaps = 34/469 (7%)
Query: 69 ALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLG 128
A ++ +T R+TYAQ++ ++ + + + ALG+ KGD V +L PNS+ + + LG
Sbjct: 34 AYVEPSTDVRMTYAQMN-ALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLG 92
Query: 129 AILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSN-----NK 183
A+ P N+ E+ + DSG+K++I + + P+I R Q++
Sbjct: 93 AVAVPINTRLAAPEVSFILSDSGSKVVIYGAP--------SAPVIDAIRAQADPPGTVTD 144
Query: 184 SVSVEELIECCD--AADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLR 241
+ + L E AADE P + DD I+Y+SGTTG KGV+ TH + S
Sbjct: 145 WIGADSLAERLRSAAADE-PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWA 203
Query: 242 WTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCC--GVTIVVMQRFDLQAMIEAIKTYQ 299
T+DV + D L +PMFH+ A T +F GVT++ M +FD + I +
Sbjct: 204 STIDVRY--RDRLLLPLPMFHV---AALTTVIFSAMRGVTLISMPQFDATKVWSLIVEER 258
Query: 300 VNNIPLVPPVILGLVKYCKDSSYLTS--LRRVGSGAAPLSKELADEFRAKFPWVELRQGY 357
V I P IL ++ + + L + R +G AP+ + L + AK +E+ QGY
Sbjct: 259 VC-IGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKN--IEVVQGY 315
Query: 358 GLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTI 417
LTESCG T ++S R ++GS G T + V + + GE+ +KS +
Sbjct: 316 ALTESCGGGTLLLSEDALR-KAGSAG--RATMFTDVAVRGDDGVIREHGEGEVVIKSDIL 372
Query: 418 MRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAV 477
++ Y+ EAT AFD +GW +TGD+ D EG+LYI DR+K++I G V PAE+E+V
Sbjct: 373 LKEYWNRPEATRDAFD-NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESV 431
Query: 478 LLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQL 526
++ P + + AVI L DE+ G+I A VV A ++++E Q++++ ++L
Sbjct: 432 IIGVPGVSEVAVIGLPDEKWGEIAAAIVV-ADQNEVSEQQIVEYCGTRL 479
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 136/460 (29%), Positives = 219/460 (47%), Gaps = 35/460 (7%)
Query: 68 VALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSL 127
V+ + + R TYA++++ R L GL ALGV GD V L N + A+ +
Sbjct: 37 VSRLHTGEVHRTTYAEVYQRARRLMGGL-RALGVGVGDRVATLGFNHFRHLEAYFAVPGM 95
Query: 128 GAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVN-----VPIIVTSRDQSNN 182
GA+L AN + EI + + K+++ L + + V V +++
Sbjct: 96 GAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE 155
Query: 183 KSVSVEELIECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRW 242
++ EE + +E ++ + + Y++GTTG KGV+ +H + + L
Sbjct: 156 GYLAYEEAL-----GEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALV-LHSLAAS 209
Query: 243 TVDVTH-AQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTYQVN 301
VD T ++ D+ L ++PMFH+ ++ R D +++E V
Sbjct: 210 LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVT 269
Query: 302 NIPLVPPVILGLVKYCKDSSY-LTSLRR--VGSGAAPLSKELADEFRAKFP--WVELRQG 356
VP V L L Y + + + L +LRR VG AAP S A+F VE+RQG
Sbjct: 270 FTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRS------LIARFERMGVEVRQG 323
Query: 357 YGLTESCGAT--TFM------VSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQR- 407
YGLTE+ F+ +S ++ G P +V D E R +P +
Sbjct: 324 YGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGR-PVPKDGKA 382
Query: 408 -GELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNG 466
GE+ LK P I GY+GNEEAT +A DG+ +TGD+ +D EG++ I DR+K+LIK G
Sbjct: 383 LGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGG 442
Query: 467 YQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVV 506
++ +LE L+ HP + +AAV+ + + + P+A VV
Sbjct: 443 EWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVV 482
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 128/399 (32%), Positives = 201/399 (50%), Gaps = 33/399 (8%)
Query: 69 ALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLG 128
A ++ +T R+TYAQ++ ++ + + + ALG+ KGD V +L PNS+ + + LG
Sbjct: 20 AYVEPSTDVRMTYAQMN-ALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLG 78
Query: 129 AILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSN-----NK 183
A+ P N+ E+ + DSG+K++I + + P+I R Q++
Sbjct: 79 AVAVPINTRLAAPEVSFILSDSGSKVVIYGAP--------SAPVIDAIRAQADPPGTVTD 130
Query: 184 SVSVEELIECCD--AADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLR 241
+ + L E AADE P + DD I+Y+SGTTG KGV+ TH + S
Sbjct: 131 WIGADSLAERLRSAAADE-PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWA 189
Query: 242 WTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCC--GVTIVVMQRFDLQAMIEAIKTYQ 299
T+DV + D L +PMFH+ A T +F GVT++ M +FD + I +
Sbjct: 190 STIDVRY--RDRLLLPLPMFHV---AALTTVIFSAMRGVTLISMPQFDATKVWSLIVEER 244
Query: 300 VNNIPLVPPVILGLVKYCKDSSYLTS--LRRVGSGAAPLSKELADEFRAKFPWVELRQGY 357
V I P IL ++ + + L + R +G AP+ + L + AK +E+ QGY
Sbjct: 245 V-CIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKN--IEVVQGY 301
Query: 358 GLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTI 417
LTESCG T ++S R ++GS G T + V + + GE+ +KS +
Sbjct: 302 ALTESCGGGTLLLSEDALR-KAGSAG--RATMFTDVAVRGDDGVIREHGEGEVVIKSDIL 358
Query: 418 MRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVD 456
++ Y+ EAT AFD +GW +TGD+ D EG+LYI D
Sbjct: 359 LKEYWNRPEATRDAFD-NGWFRTGDIGEIDDEGYLYIKD 396
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 155 bits (392), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 127/463 (27%), Positives = 223/463 (48%), Gaps = 24/463 (5%)
Query: 71 IDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAI 130
I++A ++++YA+L +A+ L A G++ GD V S+ + LA G +
Sbjct: 21 IETAAGDKISYAELVARAGRVANVLV-ARGLQVGDRVAAQTEKSVEALVLYLATVRAGGV 79
Query: 131 LSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEEL 190
P N+ T E+ + D+ K+++ + + + + T + S+ +
Sbjct: 80 YLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDA 139
Query: 191 IECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANF----ISIMQLLRWTVDV 246
A DD AAILY+SGTTG SKG L+H N ++++ R+T D
Sbjct: 140 AAGASEAFAT--IDRGADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFTPD- 196
Query: 247 THAQNDIFLCMIPMFHIYGLAFFATG--LFCCGVTIVVMQRFDLQAMIE-AIKTYQVNNI 303
D+ + +P++H +GL F A+ LF G + + + +FD +++ + + +
Sbjct: 197 -----DVLIHALPIYHTHGL-FVASNVTLFARG-SXIFLPKFDPDKILDLXARATVLXGV 249
Query: 304 PLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESC 363
P +L + K+++ R SG+APL + E+ AK L + YG TE+
Sbjct: 250 PTFYTRLLQSPRLTKETT--GHXRLFISGSAPLLADTHREWSAKTGHAVLER-YGXTETN 306
Query: 364 GATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFG 423
T+ +P G+ G P A+V D ET LP G + +K P + +GY+
Sbjct: 307 XNTS---NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGXIEVKGPNVFKGYWR 363
Query: 424 NEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPN 483
E T + F +DG+ TGDL D G+++I+ R K+L+ G+ V P E+E+ + + P
Sbjct: 364 XPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPG 423
Query: 484 ILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQL 526
++++AVI + + G+ A VVR G+ + E QV+ + QL
Sbjct: 424 VVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQL 466
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 155 bits (392), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 135/469 (28%), Positives = 219/469 (46%), Gaps = 30/469 (6%)
Query: 77 ERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANS 136
E + ++ + LASG+ GVRKG+ V V PNS+ Y A++ + A P N
Sbjct: 51 ESXNFLEICEVTKKLASGISRK-GVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINP 109
Query: 137 INTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEELIECCDA 196
E+ + DS A ++ S + V + T ++ V L E D+
Sbjct: 110 XYKSFELEHILNDSEATTLVVHSXLYENFKPV---LEKTGVERVFVVGGEVNSLSEVXDS 166
Query: 197 ADE-LPGCQLT-QDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIF 254
E ++ ++D A I Y+ GTTG KGV LTH N + L+ V + D
Sbjct: 167 GSEDFENVKVNPEEDVALIPYTGGTTGXPKGVXLTHFNLAA--NALQLAVATGLSHXDTI 224
Query: 255 LCMIPMFHI--YGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILG 312
+ P FH +GL G VV F+ + + E I+ Y+ VPP +
Sbjct: 225 VGCXPXFHSAEFGLVNLXV---TVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNV 281
Query: 313 LVKYCKDSSY---LTSLRRVGSGAAPLSKELADEF------RAKFPWVELRQGYGLTESC 363
LV + S+ + L+ +GA P++ L ++ + P + Q +G TE+C
Sbjct: 282 LVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEAC 341
Query: 364 GATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFG 423
T +P +S + G KV+ E L + GE+ ++ P I +GY+
Sbjct: 342 PXVT--TNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWK 399
Query: 424 NEEATAAA--FDEDG--WLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLL 479
E+ +DE G + +TGD+ + D EGFL+ DR+KE+IK+ GY +AP ELEA+L
Sbjct: 400 REKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLX 459
Query: 480 SHPNILDAAVIPLEDEEAGQIPMAYVVRAAG--SQLTEDQVMQFVTSQL 526
H + D AVI DEEAG++P A++V ++ E+ ++++V ++
Sbjct: 460 KHEAVXDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERI 508
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 137/461 (29%), Positives = 211/461 (45%), Gaps = 40/461 (8%)
Query: 78 RVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSI 137
R+T+ LASGL GV GD V +L+ N + A+ +GAIL P N
Sbjct: 31 RLTHRDYLARAERLASGLLRD-GVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYR 89
Query: 138 NTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEE----LIEC 193
EI + D GA ++ A + + + +P + + K+ ++ +
Sbjct: 90 LNADEIAFVLGD-GAPSVVVAGTDYRDIVAGVLPSLGGVK-----KAYAIGDGSGPFAPF 143
Query: 194 CDAADELP--GCQLTQDDTAAILYSSGTTGTSKGVILTHANFI----SIMQLLRWTVDVT 247
D A + P + D I++++ G +G +++ N + S++ R T
Sbjct: 144 KDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLT---- 199
Query: 248 HAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTYQVNNIPLVP 307
+ D+ L M+P+FH+ GL T L G V+ +FD I+ ++V +
Sbjct: 200 --EADVNLGMLPLFHVTGLGLMLT-LQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFA 256
Query: 308 PVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESCGATT 367
P +LG + + L SLR V P E + F A P +G +E+ G +T
Sbjct: 257 P-MLGNILDQAAPAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLST 312
Query: 368 FMVSPKQARARSGSCGALSPTFY--AKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNE 425
F +P + R +S A P F+ VVD E R LPP + GE+ L+ PT+ +GY+ N
Sbjct: 313 F--APYRDRPKS----AGRPLFWRTVAVVDAEDR-PLPPGEVGEIVLRGPTVFKGYWNNA 365
Query: 426 EATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRI--KELIKHNGYQVAPAELEAVLLSHPN 483
AT AF +GW TGD+ FD +G+L+ R KELIK G V PAE+E L HP
Sbjct: 366 AATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPA 424
Query: 484 ILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTS 524
I DA VI + D + + A V G + D + +FV S
Sbjct: 425 IADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVAS 465
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 124/463 (26%), Positives = 218/463 (47%), Gaps = 24/463 (5%)
Query: 71 IDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAI 130
I++A + ++YA+L +A+ L A G++ GD V S+ + LA G +
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLV-ARGLQVGDRVAAQTEXSVEALVLYLATVRAGGV 79
Query: 131 LSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEEL 190
P N+ T E+ + D+ +++ + + + T + S+ +
Sbjct: 80 YLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDA 139
Query: 191 IECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANF----ISIMQLLRWTVDV 246
A DD AAILY+SGTTG S G +L+H N ++++ R+T D
Sbjct: 140 AAGASEAFAT--IDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPD- 196
Query: 247 THAQNDIFLCMIPMFHIYGLAFFATG--LFCCGVTIVVMQRFDLQAMIEAIKTYQVNNIP 304
D+ + +P++H +GL F A+ LF G +++ + FD +++ + V +
Sbjct: 197 -----DVLIHALPIYHTHGL-FVASNVTLFARG-SMIFLPXFDPDXILDLMARATV--LM 247
Query: 305 LVPPVILGLVKYCKDSSYLTS-LRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESC 363
VP L++ + + T +R SG+APL + E+ A L + YG+TE+
Sbjct: 248 GVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVLER-YGMTETN 306
Query: 364 GATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFG 423
T+ +P G+ G P A+V D ET LP G + + P + GY+
Sbjct: 307 MNTS---NPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWR 363
Query: 424 NEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPN 483
E T + F +DG+ TGDL D G+++I+ R +L+ G+ V P E+E+ + + P
Sbjct: 364 MPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPG 423
Query: 484 ILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQL 526
++++AVI + + G+ A VVR G+ + E QV+ + QL
Sbjct: 424 VVESAVIGVPHADFGEGVTAVVVRDXGATIDEAQVLHGLDGQL 466
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 122/463 (26%), Positives = 216/463 (46%), Gaps = 24/463 (5%)
Query: 71 IDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAI 130
I++A + ++YA+L +A+ L A G++ GD V S+ + LA G +
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLV-ARGLQVGDRVAAQTEXSVEALVLYLATVRAGGV 79
Query: 131 LSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEEL 190
P N+ T E+ + D+ +++ + + + T + S+ +
Sbjct: 80 YLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDA 139
Query: 191 IECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANF----ISIMQLLRWTVDV 246
A DD AAILY+SGTTG S G +L+H N ++++ R+T D
Sbjct: 140 AAGASEAFAT--IDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPD- 196
Query: 247 THAQNDIFLCMIPMFHIYGLAFFATG--LFCCGVTIVVMQRFDLQAMIEAIKTYQVNNIP 304
D+ + +P++H +GL F A+ LF G +++ + FD +++ + V +
Sbjct: 197 -----DVLIHALPIYHTHGL-FVASNVTLFARG-SMIFLPXFDPDXILDLMARATV--LM 247
Query: 305 LVPPVILGLVKYCKDSSYLTS-LRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESC 363
VP L++ + + T +R SG+APL + E+ A L + YG+TE+
Sbjct: 248 GVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVLER-YGMTETN 306
Query: 364 GATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFG 423
T+ +P G+ G P A+V D ET LP G + + P + GY+
Sbjct: 307 MNTS---NPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWR 363
Query: 424 NEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPN 483
E T + F +DG+ TGDL D G+++I+ R +L+ G+ V P E+E+ + + P
Sbjct: 364 MPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPG 423
Query: 484 ILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQL 526
++++AVI + + G+ A+VV +E QV+ + QL
Sbjct: 424 VVESAVIGVPHADFGEGVTAFVVLXREFAPSEAQVLHGLDGQL 466
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 122/466 (26%), Positives = 219/466 (46%), Gaps = 27/466 (5%)
Query: 71 IDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAI 130
I++A + ++YA+L +A+ L A G++ GD V S+ + LA G +
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLV-ARGLQVGDRVAAQTEXSVEALVLYLATVRAGGV 79
Query: 131 LSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEEL 190
P N+ T E+ + D+ +++ + + + T + S+ +
Sbjct: 80 YLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDA 139
Query: 191 IECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANF----ISIMQLLRWTVDV 246
A DD AAILY+SGTTG S G +L+H N ++++ R+T D
Sbjct: 140 AAGASEAFAT--IDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPD- 196
Query: 247 THAQNDIFLCMIPMFHIYGLAFFATG--LFCCGVTIVVMQRFDLQAMIEAIKTYQVNNIP 304
D+ + +P++H +GL F A+ LF G +++ + FD +++ + V +
Sbjct: 197 -----DVLIHALPIYHTHGL-FVASNVTLFARG-SMIFLPXFDPDXILDLMARATV--LM 247
Query: 305 LVPPVILGLVKYCKDSSYLTS-LRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESC 363
VP L++ + + T +R SG+APL + E+ A L + YG+TE+
Sbjct: 248 GVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVLER-YGMTETN 306
Query: 364 GATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFG 423
T+ +P G+ G P A+V D ET LP G + + P + GY+
Sbjct: 307 MNTS---NPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWR 363
Query: 424 NEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPN 483
E T + F +DG+ TGDL D G+++I+ R +L+ G+ V P E+E+ + + P
Sbjct: 364 MPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPG 423
Query: 484 ILDAAVIPLEDEEAGQIPMAYVV---RAAGSQLTEDQVMQFVTSQL 526
++++AVI + + G+ A+VV A S++ +++ FV +L
Sbjct: 424 VVESAVIGVPHADFGEGVTAFVVLXREFAPSEILAEELXAFVXDRL 469
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 129/459 (28%), Positives = 212/459 (46%), Gaps = 41/459 (8%)
Query: 67 RVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFS 126
R+A+ TH +Y +L LA+G + LG+++ D V V PN + + A+F
Sbjct: 41 RIAITCGNTH--WSYRELDTRADRLAAG-FQKLGIQQKDRVVVQLPNIKEFFEVIFALFR 97
Query: 127 LGAILSPANSINTESEIVK--QVRDSGAKLIISAS-----EELQKLTKVNVP----IIVT 175
LGA+ A + SEI + ++ A +I A L + + +P IIV
Sbjct: 98 LGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVA 157
Query: 176 SRDQSNNKSVSVEELIECCDAADE---LPGCQLTQDDTAAILYSSGTTGTSKGVILTHAN 232
EE + D E LP ++ D A + S G+TG SK + TH +
Sbjct: 158 G---------EAEEFLPLEDLHTEPVKLP--EVKSSDVAFLQLSGGSTGLSKLIPRTHDD 206
Query: 233 FISIMQLLRWTVDVTHAQND-IFLCMIPMFHIYGLAFFAT-GLFCCGVTIVVMQRFDLQA 290
+I L+ +V+V + ++L +PM H Y L+ G+ G +V+
Sbjct: 207 YI---YSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDD 263
Query: 291 MIEAIKTYQVNNIPLVPPVILGLVKYCKDSSY---LTSLRRVGSGAAPLSKELADEFRAK 347
I+ +V LVPP L +V SS L+SL+ + G A S E A +A
Sbjct: 264 AFPLIEREKVTITALVPP--LAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAV 321
Query: 348 FPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQR 407
F L+Q +G+ E T + P++ + +SP ++V D R + P +
Sbjct: 322 F-GCTLQQVFGMAEGLVNYTRLDDPEEIIVNT-QGKPMSPYDESRVWDDHDR-DVKPGET 378
Query: 408 GELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGY 467
G L + P +RGY+ EE AA+F EDG+ +TGD+ +G++ + R K+ I G
Sbjct: 379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGE 438
Query: 468 QVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVV 506
+VA E+E LL+HP + DAA++ + D+ G+ +++
Sbjct: 439 KVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFII 477
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 156/324 (48%), Gaps = 15/324 (4%)
Query: 208 DDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTH-AQNDIFLCMIPMFHIYGL 266
D+ A S GTTGT K + TH ++ + R +V++ Q +LC IP H Y +
Sbjct: 184 DEVAYFQLSGGTTGTPKLIPRTHNDYYYSV---RRSVEICQFTQQTRYLCAIPAAHNYAM 240
Query: 267 AFFAT-GLFCCGVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVI---LGLVKYCKDSSY 322
+ + G+F G T+V+ I+ +QVN LVPP + L + + +
Sbjct: 241 SSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQ 300
Query: 323 LTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSC 382
L SL+ + G A LS LA A+ +L+Q +G+ E G + A +
Sbjct: 301 LASLKLLQVGGARLSATLAARIPAEIG-CQLQQVFGMAE--GLVNYTRLDDSAEKIIHTQ 357
Query: 383 G-ALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTG 441
G + P V D E LP + G L + P RGY+ + + A+AFD +G+ +G
Sbjct: 358 GYPMCPDDEVWVADAEGN-PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSG 416
Query: 442 DLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIP 501
DL D EG++ + R K+ I G ++A E+E +LL HP ++ AA++ +EDE G+
Sbjct: 417 DLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKS 476
Query: 502 MAYVVRAAGSQLTEDQVMQFVTSQ 525
AY+V L QV +F+ Q
Sbjct: 477 CAYLV--VKEPLRAVQVRRFLREQ 498
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 156/320 (48%), Gaps = 20/320 (6%)
Query: 208 DDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLA 267
DD A+I+++SGTTG K V T N + + ++ N +L ++P++HI GL+
Sbjct: 163 DDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTN--WLSVLPIYHISGLS 220
Query: 268 FFATGLFCCGVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSYLTSLR 327
+ G T+ ++ +F+ + ++ IK ++ +I LVP + L++ Y +L+
Sbjct: 221 VLLRAVIE-GFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPY--NLQ 277
Query: 328 RVGSGAAPLSKELADE-FRAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGALS 386
++ G A LS + + + P + +G+TE+C + +P+ AR + G S
Sbjct: 278 KILLGGAKLSATMIETALQYNLP---IYNSFGMTETC-SQFLTATPEMLHARPDTVGMPS 333
Query: 387 PTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYF 446
K+ + GEL +K +M GY + T E+G+ TGD+
Sbjct: 334 ANVDVKIKNPNKE------GHGELMIKGANVMNGYLYPTDLTGTF--ENGYFNTGDIAEI 385
Query: 447 DGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVV 506
D EG++ I DR K+LI G + P ++E V P I DA + D+ GQ+P Y V
Sbjct: 386 DHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFV 445
Query: 507 RAAGSQLTEDQVMQFVTSQL 526
+ S +++ Q++ +++ L
Sbjct: 446 --SESDISKAQLIAYLSKHL 463
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 128/459 (27%), Positives = 206/459 (44%), Gaps = 41/459 (8%)
Query: 67 RVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFS 126
R+A+ TH +Y +L LA+G + LG+++ D V V PN + + A+F
Sbjct: 41 RIAITCGNTH--WSYRELDTRADRLAAG-FQKLGIQQKDRVVVQLPNIKEFFEVIFALFR 97
Query: 127 LGAILSPANSINTESEIVK--QVRDSGAKLIISAS-----EELQKLTKVNVP----IIVT 175
LGA+ A + SEI + ++ A +I A L + + +P IIV
Sbjct: 98 LGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVA 157
Query: 176 SRDQSNNKSVSVEELIECCDAADE---LPGCQLTQDDTAAILYSSGTTGTSKGVILTHAN 232
EE + D E LP ++ D A + S G+TG SK + TH +
Sbjct: 158 G---------EAEEFLPLEDLHTEPVKLP--EVKSSDVAFLQLSGGSTGLSKLIPRTHDD 206
Query: 233 FISIMQLLRWTVDVTHAQND-IFLCMIPMFHIYGLAFFAT-GLFCCGVTIVVMQRFDLQA 290
+I L+ +V+V + ++L +P H Y L+ G+ G +V+
Sbjct: 207 YI---YSLKRSVEVCWLDHSTVYLAALPXAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDD 263
Query: 291 MIEAIKTYQVNNIPLVPPVILGLVKYCKDSSY---LTSLRRVGSGAAPLSKELADEFRAK 347
I+ +V LVPP L V SS L+SL+ + G A S E A +A
Sbjct: 264 AFPLIEREKVTITALVPP--LAXVWXDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAV 321
Query: 348 FPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQR 407
F L+Q +G E T + P++ + SP ++V D R + P +
Sbjct: 322 F-GCTLQQVFGXAEGLVNYTRLDDPEEIIVNT-QGKPXSPYDESRVWDDHDR-DVKPGET 378
Query: 408 GELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGY 467
G L + P +RGY+ EE AA+F EDG+ +TGD+ +G++ + R K+ I G
Sbjct: 379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGE 438
Query: 468 QVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVV 506
+VA E+E LL+HP + DAA + D+ G+ +++
Sbjct: 439 KVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFII 477
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 125/470 (26%), Positives = 215/470 (45%), Gaps = 44/470 (9%)
Query: 80 TYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSINT 139
TY +L R AS L LGV + + ++ +++ P L G + AN++ T
Sbjct: 50 TYGELEERARRFASAL-RTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLT 108
Query: 140 ESEIVKQVRDSGAKLIISASEELQKLTKV-------NVPIIVTSRDQSNNKSVSV-EELI 191
++ V + S A+ +I++ +Q +T+ +IV+ +S + + EELI
Sbjct: 109 PADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELI 168
Query: 192 ECCDAADEL--PGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTH- 248
+ A + GC DD A LYSSG+TG KG + THAN L WT ++
Sbjct: 169 DAAAPAAKAAATGC----DDIAFWLYSSGSTGKPKGTVHTHAN-------LYWTAELYAK 217
Query: 249 -----AQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVM-QRFDLQAMIEAIKTYQVNN 302
A+ND+ +F YGL T G T ++M +R A+ + ++
Sbjct: 218 PILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTV 277
Query: 303 IPLVPPVILG-LVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTE 361
VP + LV + ++R S L +E+ + F A F E+ G G TE
Sbjct: 278 FYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHF-GCEILDGIGSTE 336
Query: 362 SCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGY 421
+S + G+ G P + ++ D E A+P + G+L++K P+ Y
Sbjct: 337 ML---HIFLSNRAGAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMY 392
Query: 422 FGNEEATAAAFDEDGWLKTGD-LCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLS 480
+ N E + A F + W+++GD C ++Y R +++K +G V+P E+E VL+
Sbjct: 393 WNNREKSRATFLGE-WIRSGDKYCRLPNGCYVY-AGRSDDMLKVSGQYVSPVEVEMVLVQ 450
Query: 481 HPNILDAAVIPLEDEEAGQIPM-AYVV---RAAGSQLTEDQVMQFVTSQL 526
H +L+AAV+ + + G + A+VV A S++ +++ FV +L
Sbjct: 451 HDAVLEAAVVGV--DHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRL 498
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 118/516 (22%), Positives = 219/516 (42%), Gaps = 52/516 (10%)
Query: 21 SGFDSETGIYHSLIQLGENYRIPTRTDLDTATCVLSRFPHPDLAESRVALIDSATHERVT 80
S F S+T + S EN++I + + A V+ + + + D +E++
Sbjct: 29 SQFVSKTD-FESYEDFQENFKILVPENFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIF 87
Query: 81 YAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSINTE 140
+ + A+ + G+ KGD V + + + L + LGAI PA +
Sbjct: 88 TFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKT 147
Query: 141 SEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQS------NNKSVSVEELIECC 194
+IV ++ +G K+I+ +E+ +VP V V + L
Sbjct: 148 RDIVYRIEKAGLKMIVCIAED-------DVPEQVDEAHAECGDIPLKKAKVGGDVLEGWI 200
Query: 195 DAADEL---------PGCQLT--QDDTAAILYSSGTTGTSKGVILTHANFISIMQLLR-- 241
D EL P +++ +D + +SSGT G K ++ H N + +L
Sbjct: 201 DFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPK--MVEHDNTYPLGHILTAK 258
Query: 242 -WT------VDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEA 294
W + T A + C ++G + + C V + RF+ + M+E
Sbjct: 259 YWQNVEDDGLHYTVADSGWGKC------VWG-KLYGQWIAGCAVFVYDYDRFEAKNMLEK 311
Query: 295 IKTYQVNNIPLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELR 354
Y V P + L+K ++L+ PL+ E+ + F +F ++L
Sbjct: 312 ASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNPEVFNRF-LEFTGIKLM 370
Query: 355 QGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKS 414
+G+G TE+ T P + GS G +P + +++D + RL + GE+ + +
Sbjct: 371 EGFGQTET--VVTIATFP-WMEPKPGSIGKPTPGYKIELMDRDGRLCEVG-EEGEIVINT 426
Query: 415 ----PTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVA 470
P + ++G + DG+ TGD+ + D +G+L+ V R ++IK +GY+V
Sbjct: 427 MEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVG 486
Query: 471 PAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVV 506
P E+E+ L+ HP +L+ A+ + D GQ+ A +V
Sbjct: 487 PFEVESALIQHPAVLECAITGVPDPVRGQVIKATIV 522
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 120/480 (25%), Positives = 205/480 (42%), Gaps = 46/480 (9%)
Query: 64 AESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLA 123
A AL A R+T+A+L + ++A+ L HA G+R V V+APNS LA
Sbjct: 15 APDHCALAVPARGLRLTHAELRARVEAVAARL-HADGLRPQQRVAVVAPNSADVVIAILA 73
Query: 124 IFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRD----- 178
+ LGA+ + N +E+ EL K ++ +I R
Sbjct: 74 LHRLGAVPALLNPRLKSAELA----------------ELIKRGEMTAAVIAVGRQVADAI 117
Query: 179 ---QSNNKSVSVEELIECCDAADELPGCQLTQDDTAA---ILYSSGTTGTSKGVILTHAN 232
S + + + +L+ + P + Q + A I Y+SGTTG K I+
Sbjct: 118 FQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRA 177
Query: 233 FISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMI 292
S + + V + H ++++ L ++P++H+ G T VV++ F +
Sbjct: 178 AESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL 237
Query: 293 EAIKTYQVNNI---PLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFP 349
+ ++ QV ++ P + + S L SLR V A + + + P
Sbjct: 238 QLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP 297
Query: 350 WVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKV----VDTETRLALPPY 405
E GYG TE+ + +M PK + ++P F+++V + +
Sbjct: 298 G-EKVNGYGTTEAMN-SLYMRQPK-------TGTEMAPGFFSEVRIVRIGGGVDEIVANG 348
Query: 406 QRGELWLK-SPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKH 464
+ GEL + S + GY +ATA +DGW +T D+ + EG + I+ R+ ++I
Sbjct: 349 EEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIIS 407
Query: 465 NGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTS 524
G + P+E+E VL + P + + VI L D+ GQ A VV G L+ D + F S
Sbjct: 408 GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRS 467
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 118/475 (24%), Positives = 203/475 (42%), Gaps = 46/475 (9%)
Query: 69 ALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLG 128
AL A R+T+A+L + ++A+ L HA G+R V V+APNS LA+ LG
Sbjct: 20 ALAVPARGLRLTHAELRARVEAVAARL-HADGLRPQQRVAVVAPNSADVVIAILALHRLG 78
Query: 129 AILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRD--------QS 180
A+ + N +E+ EL K ++ +I R S
Sbjct: 79 AVPALLNPRLKSAELA----------------ELIKRGEMTAAVIAVGRQVADAIFQSGS 122
Query: 181 NNKSVSVEELIECCDAADELPGCQLTQDDTAA---ILYSSGTTGTSKGVILTHANFISIM 237
+ + + +L+ + P + Q + A I Y+SGTTG K I+ S +
Sbjct: 123 GARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRV 182
Query: 238 QLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKT 297
+ V + H ++++ L ++P++H+ G T VV++ F ++ ++
Sbjct: 183 LFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQ 242
Query: 298 YQVNNI---PLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELR 354
QV ++ P + + S L SLR V A + + + P E
Sbjct: 243 EQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG-EKV 301
Query: 355 QGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKV----VDTETRLALPPYQRGEL 410
YG TE+ + +M PK + ++P F+++V + + + GEL
Sbjct: 302 NAYGTTEAMN-SLYMRQPK-------TGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 411 WLK-SPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQV 469
+ S + GY +ATA +DGW +T D+ + EG + I+ R+ ++I G +
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENI 412
Query: 470 APAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTS 524
P+E+E VL + P + + VI L D+ GQ A VV G L+ D + F S
Sbjct: 413 HPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRS 467
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 119/475 (25%), Positives = 203/475 (42%), Gaps = 46/475 (9%)
Query: 69 ALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLG 128
AL A R+T+A+L + ++A+ L HA G+R V V+APNS LA+ LG
Sbjct: 20 ALAVPARGLRLTHAELRARVEAVAARL-HADGLRPQQRVAVVAPNSADVVIAILALHRLG 78
Query: 129 AILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRD--------QS 180
A+ + N +E+ EL K ++ +I R S
Sbjct: 79 AVPALLNPRLKSAELA----------------ELIKRGEMTAAVIAVGRQVADAIFQSGS 122
Query: 181 NNKSVSVEELIECCDAADELPGCQLTQDDTAA---ILYSSGTTGTSKGVILTHANFISIM 237
+ + + +L+ + P + Q + A I Y+SGTTG K I+ S +
Sbjct: 123 GARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRV 182
Query: 238 QLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKT 297
+ V + H ++++ L ++P++H+ G T VV++ F ++ ++
Sbjct: 183 LFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQ 242
Query: 298 YQVNNI---PLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELR 354
QV ++ P + + S L SLR V A + + + P E
Sbjct: 243 EQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG-EKV 301
Query: 355 QGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKV----VDTETRLALPPYQRGEL 410
YG TE+ + +M PK + ++P F+++V + + + GEL
Sbjct: 302 NIYGTTEAMN-SLYMRQPK-------TGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 411 WLK-SPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQV 469
+ S + GY EATA +DGW +T D+ + EG + I+ R+ ++I G +
Sbjct: 354 IVAASDSAFVGYLNQPEATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENI 412
Query: 470 APAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTS 524
P+E+E VL + P + + VI L D+ GQ A VV G L+ D + F S
Sbjct: 413 HPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRS 467
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 105/396 (26%), Positives = 171/396 (43%), Gaps = 61/396 (15%)
Query: 133 PANSINTESEIVKQVRDSGAKLIISASEE-----LQKLTKVNVPIIVTSRDQSNNKSVSV 187
P N + + E+ + DS L+++ + L L +V+V + +V
Sbjct: 97 PLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDVRARG---------AV 147
Query: 188 EELIECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLL----RWT 243
E D AD+ D A ++Y+SGTTG KG ++ + + L +WT
Sbjct: 148 PE-----DGADD--------GDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWT 194
Query: 244 VDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRF----------DLQAMIE 293
D+ + +P+FH++GL G G ++ + RF D M+
Sbjct: 195 ------GEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELNDGATMLF 248
Query: 294 AIKTYQVNNIPLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVEL 353
+ T + I P L K + L S GS A P+ E A +
Sbjct: 249 GVPT-MYHRIAETLPADPELAKALAGARLLVS----GSAALPVHDH---ERIAAATGRRV 300
Query: 354 RQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVV--DTETRLALPPYQRGELW 411
+ YG+TE+ T+ R+G+ G P ++V D AL GE+
Sbjct: 301 IERYGMTETLMNTSVRA---DGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQ 357
Query: 412 LKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDR-IKELIKHNGYQVA 470
++ P + Y +ATAAAF EDG+ +TGD+ D +G++ IV R +LIK GY++
Sbjct: 358 VRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIG 417
Query: 471 PAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVV 506
E+E LL HP + +AAV D + G+ +A++V
Sbjct: 418 AGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIV 453
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 119/480 (24%), Positives = 204/480 (42%), Gaps = 46/480 (9%)
Query: 64 AESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLA 123
A AL A R+T+A+L + ++A+ L HA G+R V V+APNS LA
Sbjct: 15 APDHCALAVPARGLRLTHAELRARVEAVAARL-HADGLRPQQRVAVVAPNSADVVIAILA 73
Query: 124 IFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRD----- 178
+ LGA+ + N +E+ EL K ++ +I R
Sbjct: 74 LHRLGAVPALLNPRLKSAELA----------------ELIKRGEMTAAVIAVGRQVADAI 117
Query: 179 ---QSNNKSVSVEELIECCDAADELPGCQLTQDDTAA---ILYSSGTTGTSKGVILTHAN 232
S + + + +L+ + P + Q + A I Y+SGTTG K I+
Sbjct: 118 FQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRA 177
Query: 233 FISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMI 292
S + + V + H ++++ L ++P++H+ G T VV++ F +
Sbjct: 178 AESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL 237
Query: 293 EAIKTYQVNNI---PLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFP 349
+ ++ QV ++ P + + S L SLR V A + + + P
Sbjct: 238 QLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP 297
Query: 350 WVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKV----VDTETRLALPPY 405
E YG TE+ + +M PK + ++P F+++V + +
Sbjct: 298 G-EKVNIYGTTEAMN-SLYMRQPK-------TGTEMAPGFFSEVRIVRIGGGVDEIVANG 348
Query: 406 QRGELWLK-SPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKH 464
+ GEL + S + GY +ATA +DGW +T D+ + EG + I+ R+ ++I
Sbjct: 349 EEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIIS 407
Query: 465 NGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTS 524
G + P+E+E VL + P + + VI L D+ GQ A VV G L+ D + F S
Sbjct: 408 GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRS 467
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 122/482 (25%), Positives = 209/482 (43%), Gaps = 50/482 (10%)
Query: 64 AESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLA 123
A AL A R+T+A+L + ++A+ L HA G+R V V+APNS LA
Sbjct: 15 APDHCALAVPARGLRLTHAELRARVEAVAARL-HADGLRPQQRVAVVAPNSADVVIAILA 73
Query: 124 IFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRD----- 178
+ LGA+ + N +E+ EL K ++ +I R
Sbjct: 74 LHRLGAVPALLNPRLKSAELA----------------ELIKRGEMTAAVIAVGRQVADAI 117
Query: 179 ---QSNNKSVSVEELIECCDAADELPGCQLTQDDTAA---ILYSSGTTGTSKGVILTHAN 232
S + + + +L+ + P + Q + A I Y+SGTTG K I+
Sbjct: 118 FQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRA 177
Query: 233 FISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGV--TIVVMQRFDLQA 290
S + + V + H ++++ L ++P++H+ G FFA + + T VV++ F
Sbjct: 178 AESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVG--FFAVLVAALALDGTYVVVEEFRPVD 235
Query: 291 MIEAIKTYQVNNI---PLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAK 347
++ ++ QV ++ P + + S L SLR V A + + +
Sbjct: 236 ALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQH 295
Query: 348 FPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKV----VDTETRLALP 403
P E YG TE+ + +M PK + ++P F+++V + +
Sbjct: 296 LPG-EKVNIYGTTEAMN-SLYMRQPK-------TGTEMAPGFFSEVRIVRIGGGVDEIVA 346
Query: 404 PYQRGELWLK-SPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELI 462
+ GEL + S + GY +ATA +DGW +T D+ + EG + I+ R+ ++I
Sbjct: 347 NGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVPDMI 405
Query: 463 KHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFV 522
G + P+E+E VL + P + + VI L D+ GQ A VV G L+ D + F
Sbjct: 406 ISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFC 465
Query: 523 TS 524
S
Sbjct: 466 RS 467
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 125/514 (24%), Positives = 229/514 (44%), Gaps = 72/514 (14%)
Query: 67 RVALI----DSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICL 122
R A+I D++ + ++Y +LHR + A+ L LG++KGDVV + P + P +
Sbjct: 92 RTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMP---MVPEAAV 147
Query: 123 AIFS---LGAILSPANSINTESEIVKQVRDSGAKLIISASEELQK-------------LT 166
A+ + +GA+ S + + ++ DS ++L+I+A E ++ L
Sbjct: 148 AMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK 207
Query: 167 KVNVP----IIVTSR-----DQSNNKSVSVEELIECCDAADELPGCQLTQDDTAAILYSS 217
NV +IV R D + + +LIE A+ E + +D ILY+S
Sbjct: 208 NPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIE--KASPEHQPEAMNAEDPLFILYTS 265
Query: 218 GTTGTSKGVILTHANF-ISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCC 276
G+TG KGV+ T + + ++ D + DI+ C + + G ++ G C
Sbjct: 266 GSTGKPKGVLHTTGGYLVYAATTFKYVFD--YHPGDIYWCTADVGWVTGHSYLLYGPLAC 323
Query: 277 GVTIVVMQ---RFDLQA-MIEAIKTYQVNNIPLVPPVILGLV---KYCKDSSYLTSLRRV 329
G T ++ + + A M + + +QVN + P I L+ + + +SLR +
Sbjct: 324 GATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRIL 383
Query: 330 GSGAAPLSKELADEF-----RAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGA 384
GS P++ E + + + K P V+ + TE+ G FM++P + A
Sbjct: 384 GSAGEPINPEAWEWYWKKIGKEKCPVVDT---WWQTETGG---FMITPLPGAIELKAGSA 437
Query: 385 LSPTFYAK--VVDTETRLALPPYQ---RGELWLKS--PTIMRGYFGNEEATAAAFDE--D 435
P F + +VD E P + G L + P R FG+ E +
Sbjct: 438 TRPFFGVQPALVDNEGH----PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFK 493
Query: 436 GWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDE 495
+GD D +G+ +I R+ +++ +G+++ AE+E+ L++HP I +AAV+ +
Sbjct: 494 NMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHA 553
Query: 496 EAGQIPMAYVVRAAGSQLTED---QVMQFVTSQL 526
GQ AYV G + + + +V +V ++
Sbjct: 554 IKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEI 587
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 125/514 (24%), Positives = 229/514 (44%), Gaps = 72/514 (14%)
Query: 67 RVALI----DSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICL 122
R A+I D++ + ++Y +LHR + A+ L LG++KGDVV + P + P +
Sbjct: 92 RTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMP---MVPEAAV 147
Query: 123 AIFS---LGAILSPANSINTESEIVKQVRDSGAKLIISASEELQK-------------LT 166
A+ + +GA+ S + + ++ DS ++L+I+A E ++ L
Sbjct: 148 AMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK 207
Query: 167 KVNVP----IIVTSR-----DQSNNKSVSVEELIECCDAADELPGCQLTQDDTAAILYSS 217
NV +IV R D + + +LIE A+ E + +D ILY+S
Sbjct: 208 NPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIE--KASPEHQPEAMNAEDPLFILYTS 265
Query: 218 GTTGTSKGVILTHANF-ISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCC 276
G+TG KGV+ T + + ++ D + DI+ C + + G ++ G C
Sbjct: 266 GSTGKPKGVLHTTGGYLVYAATTFKYVFD--YHPGDIYWCTADVGWVTGHSYLLYGPLAC 323
Query: 277 GVTIVVMQ---RFDLQA-MIEAIKTYQVNNIPLVPPVILGLV---KYCKDSSYLTSLRRV 329
G T ++ + + A M + + +QVN + P I L+ + + +SLR +
Sbjct: 324 GATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRIL 383
Query: 330 GSGAAPLSKELADEF-----RAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGA 384
GS P++ E + + + K P V+ + TE+ G FM++P + A
Sbjct: 384 GSVGEPINPEAWEWYWKKIGKEKCPVVDT---WWQTETGG---FMITPLPGAIELKAGSA 437
Query: 385 LSPTFYAK--VVDTETRLALPPYQ---RGELWLKS--PTIMRGYFGNEEATAAAFDE--D 435
P F + +VD E P + G L + P R FG+ E +
Sbjct: 438 TRPFFGVQPALVDNEGH----PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFK 493
Query: 436 GWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDE 495
+GD D +G+ +I R+ +++ +G+++ AE+E+ L++HP I +AAV+ +
Sbjct: 494 NMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHA 553
Query: 496 EAGQIPMAYVVRAAGSQLTED---QVMQFVTSQL 526
GQ AYV G + + + +V +V ++
Sbjct: 554 IKGQAIYAYVTLNHGEEPSPELYAEVRNWVAKEI 587
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 125/514 (24%), Positives = 229/514 (44%), Gaps = 72/514 (14%)
Query: 67 RVALI----DSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICL 122
R A+I D++ + ++Y +LHR + A+ L LG++KGDVV + P + P +
Sbjct: 92 RTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMP---MVPEAAV 147
Query: 123 AIFS---LGAILSPANSINTESEIVKQVRDSGAKLIISASEELQK-------------LT 166
A+ + +GA+ S + + ++ DS ++L+I+A E ++ L
Sbjct: 148 AMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALK 207
Query: 167 KVNVP----IIVTSR-----DQSNNKSVSVEELIECCDAADELPGCQLTQDDTAAILYSS 217
NV +IV R D + + +LIE A+ E + +D ILY+S
Sbjct: 208 NPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIE--KASPEHQPEAMNAEDPLFILYTS 265
Query: 218 GTTGTSKGVILTHANF-ISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCC 276
G+TG KGV+ T + + ++ D + DI+ C + + G ++ G C
Sbjct: 266 GSTGKPKGVLHTTGGYLVYAATTFKYVFD--YHPGDIYWCTADVGWVTGHSYLLYGPLAC 323
Query: 277 GVTIVVMQ---RFDLQA-MIEAIKTYQVNNIPLVPPVILGLV---KYCKDSSYLTSLRRV 329
G T ++ + + A M + + +QVN + P I L+ + + +SLR +
Sbjct: 324 GATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRIL 383
Query: 330 GSGAAPLSKELADEF-----RAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGA 384
GS P++ E + + + K P V+ + TE+ G FM++P + A
Sbjct: 384 GSVGEPINPEAWEWYWKKIGKEKCPVVDT---WWQTETGG---FMITPLPGAIELKAGSA 437
Query: 385 LSPTFYAK--VVDTETRLALPPYQ---RGELWLKS--PTIMRGYFGNEEATAAAFDE--D 435
P F + +VD E P + G L + P R FG+ E +
Sbjct: 438 TRPFFGVQPALVDNEGH----PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFK 493
Query: 436 GWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDE 495
+GD D +G+ +I R+ +++ +G+++ AE+E+ L++HP I +AAV+ +
Sbjct: 494 NMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHA 553
Query: 496 EAGQIPMAYVVRAAGSQLTED---QVMQFVTSQL 526
GQ AYV G + + + +V +V ++
Sbjct: 554 IKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEI 587
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 125/514 (24%), Positives = 229/514 (44%), Gaps = 72/514 (14%)
Query: 67 RVALI----DSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICL 122
R A+I D++ + ++Y +LHR + A+ L LG++KGDVV + P + P +
Sbjct: 92 RTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMP---MVPEAAV 147
Query: 123 AIFS---LGAILSPANSINTESEIVKQVRDSGAKLIISASEELQK-------------LT 166
A+ + +GA+ S + + ++ DS ++L+I+A E ++ L
Sbjct: 148 AMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK 207
Query: 167 KVNVP----IIVTSR-----DQSNNKSVSVEELIECCDAADELPGCQLTQDDTAAILYSS 217
NV +IV R D + + +LIE A+ E + +D ILY+S
Sbjct: 208 NPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIE--KASPEHQPEAMNAEDPLFILYTS 265
Query: 218 GTTGTSKGVILTHANF-ISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCC 276
G+TG KGV+ T + + ++ D + DI+ C + + G ++ G C
Sbjct: 266 GSTGKPKGVLHTTGGYLVYAATTFKYVFD--YHPGDIYWCTADVGWVTGHSYLLYGPLAC 323
Query: 277 GVTIVVMQ---RFDLQA-MIEAIKTYQVNNIPLVPPVILGLV---KYCKDSSYLTSLRRV 329
G T ++ + + A M + + +QVN + P I L+ + + +SLR +
Sbjct: 324 GATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRIL 383
Query: 330 GSGAAPLSKELADEF-----RAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGA 384
GS P++ E + + + K P V+ + TE+ G FM++P + A
Sbjct: 384 GSVGEPINPEAWEWYWKKIGKEKCPVVDT---WWQTETGG---FMITPLPGAIELKAGSA 437
Query: 385 LSPTFYAK--VVDTETRLALPPYQ---RGELWLKS--PTIMRGYFGNEEATAAAFDE--D 435
P F + +VD E P + G L + P R FG+ E +
Sbjct: 438 TRPFFGVQPALVDNEGH----PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFK 493
Query: 436 GWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDE 495
+GD D +G+ +I R+ +++ +G+++ AE+E+ L++HP I +AAV+ +
Sbjct: 494 NMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHA 553
Query: 496 EAGQIPMAYVVRAAGSQLTED---QVMQFVTSQL 526
GQ AYV G + + + +V +V ++
Sbjct: 554 IKGQAIYAYVTLNHGEEPSPELYAEVRNWVEKEI 587
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 125/514 (24%), Positives = 229/514 (44%), Gaps = 72/514 (14%)
Query: 67 RVALI----DSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICL 122
R A+I D++ + ++Y +LHR + A+ L LG++KGDVV + P + P +
Sbjct: 92 RTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMP---MVPEAAV 147
Query: 123 AIFS---LGAILSPANSINTESEIVKQVRDSGAKLIISASEELQK-------------LT 166
A+ + +GA+ S + + ++ DS ++L+I+A E ++ L
Sbjct: 148 AMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK 207
Query: 167 KVNVP----IIVTSR-----DQSNNKSVSVEELIECCDAADELPGCQLTQDDTAAILYSS 217
NV +IV R D + + +LIE A+ E + +D ILY+S
Sbjct: 208 NPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIE--KASPEHQPEAMNAEDPLFILYTS 265
Query: 218 GTTGTSKGVILTHANF-ISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCC 276
G+TG KGV+ T + + ++ D + DI+ C + + G ++ G C
Sbjct: 266 GSTGKPKGVLHTTGGYLVYAATTFKYVFD--YHPGDIYWCTADVGWVTGHSYLLYGPLAC 323
Query: 277 GVTIVVMQ---RFDLQA-MIEAIKTYQVNNIPLVPPVILGLV---KYCKDSSYLTSLRRV 329
G T ++ + + A M + + +QVN + P I L+ + + +SLR +
Sbjct: 324 GATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRIL 383
Query: 330 GSGAAPLSKELADEF-----RAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGA 384
GS P++ E + + + K P V+ + TE+ G FM++P + A
Sbjct: 384 GSVGEPINPEAWEWYWKKIGKEKCPVVDT---WWQTETGG---FMITPLPGAIELKAGSA 437
Query: 385 LSPTFYAK--VVDTETRLALPPYQ---RGELWLKS--PTIMRGYFGNEEATAAAFDE--D 435
P F + +VD E P + G L + P R FG+ E +
Sbjct: 438 TRPFFGVQPALVDNEGH----PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFK 493
Query: 436 GWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDE 495
+GD D +G+ +I R+ +++ +G+++ AE+E+ L++HP I +AAV+ +
Sbjct: 494 NMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHA 553
Query: 496 EAGQIPMAYVVRAAGSQLTED---QVMQFVTSQL 526
GQ AYV G + + + +V +V ++
Sbjct: 554 IKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEI 587
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 125/514 (24%), Positives = 229/514 (44%), Gaps = 72/514 (14%)
Query: 67 RVALI----DSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICL 122
R A+I D++ + ++Y +LHR + A+ L LG++KGDVV + P + P +
Sbjct: 92 RTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMP---MVPEAAV 147
Query: 123 AIFS---LGAILSPANSINTESEIVKQVRDSGAKLIISASEELQK-------------LT 166
A+ + +GA+ S + + ++ DS ++L+I+A E ++ L
Sbjct: 148 AMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK 207
Query: 167 KVNVP----IIVTSR-----DQSNNKSVSVEELIECCDAADELPGCQLTQDDTAAILYSS 217
NV +IV R D + + +LIE A+ E + +D ILY+S
Sbjct: 208 NPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIE--KASPEHQPEAMNAEDPLFILYTS 265
Query: 218 GTTGTSKGVILTHANF-ISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCC 276
G+TG KGV+ T + + ++ D + DI+ C + + G ++ G C
Sbjct: 266 GSTGKPKGVLHTTGGYLVYAATTFKYVFD--YHPGDIYWCTADVGWVTGHSYLLYGPLAC 323
Query: 277 GVTIVVMQ---RFDLQA-MIEAIKTYQVNNIPLVPPVILGLV---KYCKDSSYLTSLRRV 329
G T ++ + + A M + + +QVN + P I L+ + + +SLR +
Sbjct: 324 GATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRIL 383
Query: 330 GSGAAPLSKELADEF-----RAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGA 384
GS P++ E + + + K P V+ + TE+ G FM++P + A
Sbjct: 384 GSVGEPINPEAWEWYWKKIGKEKCPVVDT---WWQTETGG---FMITPLPGAIELKAGSA 437
Query: 385 LSPTFYAK--VVDTETRLALPPYQ---RGELWLKS--PTIMRGYFGNEEATAAAFDE--D 435
P F + +VD E P + G L + P R FG+ E +
Sbjct: 438 TRPFFGVQPALVDNEGH----PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFK 493
Query: 436 GWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDE 495
+GD D +G+ +I R+ +++ +G+++ AE+E+ L++HP I +AAV+ +
Sbjct: 494 NMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHA 553
Query: 496 EAGQIPMAYVVRAAGSQLTED---QVMQFVTSQL 526
GQ AYV G + + + +V +V ++
Sbjct: 554 IKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEI 587
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 125/514 (24%), Positives = 228/514 (44%), Gaps = 72/514 (14%)
Query: 67 RVALI----DSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICL 122
R A+I D++ + ++Y +LHR + A+ L LG++KGDVV + P + P +
Sbjct: 92 RTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMP---MVPEAAV 147
Query: 123 AIFS---LGAILSPANSINTESEIVKQVRDSGAKLIISASEELQK-------------LT 166
A+ + +GA+ S + + + DS ++L+I+A E ++ L
Sbjct: 148 AMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK 207
Query: 167 KVNVP----IIVTSR-----DQSNNKSVSVEELIECCDAADELPGCQLTQDDTAAILYSS 217
NV +IV R D + + +LIE A+ E + +D ILY+S
Sbjct: 208 NPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIE--KASPEHQPEAMNAEDPLFILYTS 265
Query: 218 GTTGTSKGVILTHANF-ISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCC 276
G+TG KGV+ T + + ++ D + DI+ C + + G ++ G C
Sbjct: 266 GSTGKPKGVLHTTGGYLVYAATTFKYVFD--YHPGDIYWCTADVGWVTGHSYLLYGPLAC 323
Query: 277 GVTIVVMQ---RFDLQA-MIEAIKTYQVNNIPLVPPVILGLV---KYCKDSSYLTSLRRV 329
G T ++ + + A M + + +QVN + P I L+ + + +SLR +
Sbjct: 324 GATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRIL 383
Query: 330 GSGAAPLSKELADEF-----RAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGA 384
GS P++ E + + + K P V+ + TE+ G FM++P + A
Sbjct: 384 GSVGEPINPEAWEWYWKKIGKEKCPVVDT---WWQTETGG---FMITPLPGAIELKAGSA 437
Query: 385 LSPTFYAK--VVDTETRLALPPYQ---RGELWLKS--PTIMRGYFGNEEATAAAFDE--D 435
P F + +VD E P + G L + P R FG+ E +
Sbjct: 438 TRPFFGVQPALVDNEGH----PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFK 493
Query: 436 GWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDE 495
+GD D +G+ +I R+ +++ +G+++ AE+E+ L++HP I +AAV+ +
Sbjct: 494 NMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHA 553
Query: 496 EAGQIPMAYVVRAAGSQLTED---QVMQFVTSQL 526
GQ AYV G + + + +V +V ++
Sbjct: 554 IKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEI 587
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 117/448 (26%), Positives = 202/448 (45%), Gaps = 35/448 (7%)
Query: 78 RVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSI 137
+++Y +L R +LA+ L G+ KGD V PN + + A+ G ++ A
Sbjct: 55 QLSYIELDRLSTNLATRLAEK-GLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYS 113
Query: 138 NTESEIVKQVRDSGAKLIISASEE--------LQKLTKVNVP--IIVTSRDQSNNKSV-- 185
+ + E+ ++ KL+I + + + L VN+ II+ Q+ + +
Sbjct: 114 HRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLD 173
Query: 186 SVEELIECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVD 245
+E E P D+ A S G+TGT K + TH ++ + R + +
Sbjct: 174 WIETPAETFVDFSSTPA-----DEVAFFQLSGGSTGTPKLIPRTHNDYDYSV---RASAE 225
Query: 246 VTHAQ-NDIFLCMIPMFHIYGLAF-FATGLFCCGVTIVVMQRFDLQAMIEAIKTYQVNNI 303
+ N LC +P H + L+ A G+ G +V+ + I+ +QVN
Sbjct: 226 ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMA 285
Query: 304 PLVP-PVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWV---ELRQGYGL 359
LVP VI+ L K + + SL+ + G A + LA + P V +L+Q +G+
Sbjct: 286 SLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQV----PEVLNCKLQQVFGM 341
Query: 360 TES-CGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIM 418
E T S +Q G +S K+VD + R +P + G L + P
Sbjct: 342 AEGLVNYTRLDDSDEQIFTTQGR--PISSDDEIKIVDEQYR-EVPEGEIGMLATRGPYTF 398
Query: 419 RGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVL 478
GY+ + E + FDED + +GDL +G L +V RIK+ I G ++A E+E ++
Sbjct: 399 CGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLI 458
Query: 479 LSHPNILDAAVIPLEDEEAGQIPMAYVV 506
L HP ++ AA++ + DE+ G+ A++V
Sbjct: 459 LLHPEVMHAALVAIVDEQFGEKSCAFIV 486
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 121/481 (25%), Positives = 217/481 (45%), Gaps = 47/481 (9%)
Query: 79 VTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSIN 138
+TY +L + +A L +++GVRKGD V V P LAI +GAI S +
Sbjct: 114 ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 173
Query: 139 TESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTS-------------RDQSNNKSV 185
+ + + ++ D +K++I+ E + + IV ++NN SV
Sbjct: 174 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV 233
Query: 186 SVEELIECCDAADE------LPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFI-SIMQ 238
+ + A ++ P + +D +LY+SG+TG KGV + A ++ +
Sbjct: 234 AFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALL 293
Query: 239 LLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRF----DLQAMIEA 294
+R+T D TH Q D+F + I G + G G +V + + +
Sbjct: 294 TMRYTFD-TH-QEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI 351
Query: 295 IKTYQVNNIPLVPPVILGLVKYCKDS----SYLTSLRRVGSGAAPLSKELADEFRAKFPW 350
I ++V V P L L+K DS L SLR +GS P++ E+ + + K
Sbjct: 352 IDEHKVTQF-YVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGK 410
Query: 351 VELR--QGYGLTESCGATTFMVSPKQARARSGSCGALSPTFY---AKVVDTETRLAL-PP 404
E+ Y TES + +V+P G+ S F+ A V+D T L
Sbjct: 411 NEIPIVDTYWQTESG---SHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTS 467
Query: 405 YQRGELWLKS--PTIMRGYFGNEEATAAAF--DEDGWLKTGDLCYFDGEGFLYIVDRIKE 460
+ G L +K+ P+ R + N + + G+ TGD D +G+++I+ R+ +
Sbjct: 468 HAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDD 527
Query: 461 LIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVV---RAAGSQLTEDQ 517
++ +G++++ AE+EA ++ P + + AV+ D+ GQ A+VV +++ S T+D+
Sbjct: 528 VVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDE 587
Query: 518 V 518
+
Sbjct: 588 L 588
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 100/451 (22%), Positives = 210/451 (46%), Gaps = 40/451 (8%)
Query: 80 TYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSINT 139
+ +L + + A+ L A G+++GD V V+ P + + L G I P
Sbjct: 75 NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134
Query: 140 ESEIVKQVRDSGAKLIISASEELQKLTKV-----NVPIIVTSRDQSNNKSVSVEELIECC 194
++I+ +++ S AK I++ E +Q++ V ++ I + ++S + ++ ++L+
Sbjct: 135 STDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLN-- 192
Query: 195 DAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQL-----------LRWT 243
+A+ + + +AI ++SGT+G K ++++ ++ + WT
Sbjct: 193 EASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWT 252
Query: 244 VDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTYQVNNI 303
+ T +I ++ + + F + ++ +FD +++ + +Y + ++
Sbjct: 253 ISDTGWILNILCSLMEPWALGACTF-----------VHLLPKFDPLVILKTLSSYPIKSM 301
Query: 304 PLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESC 363
P V L++ S L+ + L E + +RA+ +++R+ YG TE+
Sbjct: 302 MGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQTG-LDIRESYGQTET- 359
Query: 364 GATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTI-----M 418
T MVS K + + G G + + +++D + + LPP G++ ++ I
Sbjct: 360 -GLTCMVS-KTMKIKPGYMGTAASCYDVQIIDDKGNV-LPPGTEGDIGIRVKPIRPIGIF 416
Query: 419 RGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVL 478
GY N + TAA D WL GD D +G+ + R ++I +GY++ P+E+E L
Sbjct: 417 SGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENAL 475
Query: 479 LSHPNILDAAVIPLEDEEAGQIPMAYVVRAA 509
+ HP +++ AVI D G++ A+VV A+
Sbjct: 476 MEHPAVVETAVISSPDPVRGEVVKAFVVLAS 506
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 100/451 (22%), Positives = 210/451 (46%), Gaps = 40/451 (8%)
Query: 80 TYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSINT 139
+ +L + + A+ L A G+++GD V V+ P + + L G I P
Sbjct: 75 NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134
Query: 140 ESEIVKQVRDSGAKLIISASEELQKLTKV-----NVPIIVTSRDQSNNKSVSVEELIECC 194
++I+ +++ S AK I++ E +Q++ V ++ I + ++S + ++ ++L+
Sbjct: 135 STDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLN-- 192
Query: 195 DAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQL-----------LRWT 243
+A+ + + +AI ++SGT+G K ++++ ++ + WT
Sbjct: 193 EASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWT 252
Query: 244 VDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTYQVNNI 303
+ T +I ++ + + F + ++ +FD +++ + +Y + ++
Sbjct: 253 ISDTGWILNILCSLMEPWALGACTF-----------VHLLPKFDPLVILKTLSSYPIKSM 301
Query: 304 PLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESC 363
P V L++ S L+ + L E + +RA+ +++R+ YG TE+
Sbjct: 302 MGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQTG-LDIRESYGQTET- 359
Query: 364 GATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTI-----M 418
T MVS K + + G G + + +++D + + LPP G++ ++ I
Sbjct: 360 -GLTCMVS-KTMKIKPGYMGTAASCYDVQIIDDKGNV-LPPGTEGDIGIRVKPIRPIGIF 416
Query: 419 RGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVL 478
GY N + TAA D WL GD D +G+ + R ++I +GY++ P+E+E L
Sbjct: 417 SGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENAL 475
Query: 479 LSHPNILDAAVIPLEDEEAGQIPMAYVVRAA 509
+ HP +++ AVI D G++ A+VV A+
Sbjct: 476 MEHPAVVETAVISSPDPVRGEVVKAFVVLAS 506
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 118/470 (25%), Positives = 203/470 (43%), Gaps = 36/470 (7%)
Query: 69 ALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLG 128
AL A R+T+A+L + ++A+ L HA G+R V V+APNS LA+ LG
Sbjct: 20 ALAVPARGLRLTHAELRARVEAVAARL-HADGLRPQQRVAVVAPNSADVVIAILALHRLG 78
Query: 129 AI---LSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSV 185
A+ L+P +E++K+ + A +I+ ++ + S + +
Sbjct: 79 AVPALLNPRLKSAELAELIKRGEXTAA--VIAVGRQVAD---------AIFQSGSGARII 127
Query: 186 SVEELIECCDAADELPGCQLTQDDTAA---ILYSSGTTGTSKGVILTHANFISIMQLLRW 242
+ +L+ + P + Q + A I Y+SGTTG K I+ S +
Sbjct: 128 FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXST 187
Query: 243 TVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTYQVNN 302
V + H ++++ L + P++H+ G T VV++ F ++ ++ QV +
Sbjct: 188 QVGLRHGRHNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTS 247
Query: 303 I---PLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGL 359
+ P + + S L SLR V A + + P E YG
Sbjct: 248 LFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPG-EKVNIYGT 306
Query: 360 TESCGATTFMVSPKQARARSGSCGALSPTFYAKV----VDTETRLALPPYQRGELWLK-S 414
TE+ + + PK +G+ A P F+++V + + + GEL + S
Sbjct: 307 TEAXN-SLYXRQPK-----TGTEXA--PGFFSEVRIVRIGGGVDEIVANGEEGELIVAAS 358
Query: 415 PTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAEL 474
+ GY +ATA +DGW +T D+ + EG + I+ R+ + I G + P+E+
Sbjct: 359 DSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEI 417
Query: 475 EAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTS 524
E VL + P + + VI L D+ GQ A VV G L+ D + F S
Sbjct: 418 ERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRS 467
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 125/446 (28%), Positives = 184/446 (41%), Gaps = 61/446 (13%)
Query: 64 AESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGD-VVFVLAPNSLLYPSICL 122
A R AL SA +R++Y +L ++A L A GVR GD V ++P + +I L
Sbjct: 48 APERTAL--SAEDDRISYGRLDAWSDAVARTLL-AEGVRPGDRVALRMSPGAEAIVAI-L 103
Query: 123 AIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNN 182
AI GA P + N S + DSGA +I E +T+V
Sbjct: 104 AILKCGAAYVPVDLRNPVSRSDFILADSGASALIGEPHEGCAVTRV-------------- 149
Query: 183 KSVSVEELIECCDA------ADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISI 236
V + EC DA PG + D A ++Y+SGTTG KGV + HAN +++
Sbjct: 150 --VRTAAVAECKDAEPGPVTGAPGPGAE----DMAYVIYTSGTTGNPKGVPVRHANVLAL 203
Query: 237 MQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFA---TGLFCCGVTIVVMQRFDLQA--- 290
+ D + +D +L +FH F G F G +VV+ + +
Sbjct: 204 LAGAPSVFDFS--GDDRWL----LFHSLSFDFSVWEIWGAFSTGAELVVLPHWAARTPEQ 257
Query: 291 MIEAIKTYQVNNIPLVPPVILGLVKYC-KDSSYLTSLRRVGSGA----APLSKELADEFR 345
+ I V I P L L + + ++ LR V G AP+ + A F
Sbjct: 258 YLAVIIDRGVTVINQTPTAFLALTEAAVRGGRDVSGLRYVIFGGEKLTAPMLRPWAKAFG 317
Query: 346 AKFPWVELRQGYGLTESCGATTFMVSPKQARARSGS-CGALSPTFYAKVVDTETRLALPP 404
P L GYG+TE+ TTF + A+ S G P+F +VV + R + P
Sbjct: 318 LDRP--RLVNGYGITETTVFTTFEEITEAYLAQDASIIGRALPSFGTRVVGDDGR-DVAP 374
Query: 405 YQRGELWLKSPTIMRGYFGNEEATAAAFDEDG---------WLKTGDLCYFDGEGFLYIV 455
+ GELWL + GY E TA F E + +TGDL +G
Sbjct: 375 GETGELWLSGAQLAEGYLRRPELTAEKFPEVTDEKTGESVRYYRTGDLVSELPDGRFAYE 434
Query: 456 DRIKELIKHNGYQVAPAELEAVLLSH 481
R IK GY++ +++E + H
Sbjct: 435 GRADLQIKLRGYRIELSDIETAVRRH 460
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 117/462 (25%), Positives = 183/462 (39%), Gaps = 52/462 (11%)
Query: 64 AESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLA 123
A VAL+ A + +TY L+ LA L LGV G +V V LA
Sbjct: 88 APDAVALLHEA--DELTYGALNERANRLAHRLV-GLGVAPGTLVGVHLERGFDMVVALLA 144
Query: 124 IFSLGA---ILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQS 180
+ G +L P + + + D+GA P++VTSR S
Sbjct: 145 VLKAGGGYTMLDPQFPVE---RLALSLEDTGA------------------PLLVTSRPLS 183
Query: 181 NNKSVSVEELIECCDAADELPGCQLTQ----DDTAAILYSSGTTGTSKGVILTHANFISI 236
+ + +E +AA + P L +D A ++++SG+TG KGV+ H
Sbjct: 184 GRLTGTTTLYVED-EAASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGT 242
Query: 237 MQLLRWTVDVTHAQNDIFLCMIPM-FHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAI 295
+ +++FL P+ + +GL F LF + Q D + E +
Sbjct: 243 YLGQDYA---GFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELV 299
Query: 296 KTYQVNNIPLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQ 355
+ V + L + LV ++ +R +G P S + R P + L
Sbjct: 300 ARHGVTMLQLSASLFNFLVDEVPEA--FEGVRYAITGGEPASVPHVAKARRDHPALRLGN 357
Query: 356 GYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAK---VVDTETRLALPPYQRGELWL 412
GYG ES G TT A SG+ + K V+D + + A GEL++
Sbjct: 358 GYGPAESMGFTTHHAV--VAGDLSGTALPIGVPLAGKRAYVLDDDLKPAAN-GALGELYV 414
Query: 413 KSPTIMRGYFGNEEATAAAFDEDGW--------LKTGDLCYFDGEGFLYIVDRIKELIKH 464
+ GY TA F D + +TGDL +G L V R + +K
Sbjct: 415 AGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKI 474
Query: 465 NGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVV 506
G++V P E+EA L+ HP + AAV+ + + +AYVV
Sbjct: 475 RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVV 516
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 102/459 (22%), Positives = 194/459 (42%), Gaps = 33/459 (7%)
Query: 76 HERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPAN 135
+E++TY +L+ LA ++ G+ K +V ++ S+ LA+ G P +
Sbjct: 62 NEQLTYHELNVKANQLAR-IFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPID 120
Query: 136 SINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEELIECCD 195
+ I + DS A+++ LT+ ++ ++ + + + E+ I+ +
Sbjct: 121 IEYPKERIQYILDDSQARML---------LTQKHLVHLIHNIQFNGQVEIFEEDTIKIRE 171
Query: 196 AAD-ELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIF 254
+ +P D A ++Y+SGTTG KG +L H ++ +++VT
Sbjct: 172 GTNLHVPS---KSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQ 228
Query: 255 LCMIPMFHIYGLAFFATGLFCCGVTIVVMQRF-DLQAMIEAIKTYQVNNIPLVPPVILGL 313
I F F L + I++ D + I ++ I L P ++ L
Sbjct: 229 FASIS-FDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL 287
Query: 314 VKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESCGATTFMVSPK 373
D + S++ + + + S L ++++ K ++ YG TE+ T V+ K
Sbjct: 288 -----DPERILSIQTLITAGSATSPSLVNKWKEKVTYI---NAYGPTETTICATTWVATK 339
Query: 374 QARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFD 433
+ S GA +VD +L + GEL + + RGY+ E T+ F
Sbjct: 340 ETIGHSVPIGAPIQNTQIYIVDENLQLK-SVGEAGELCIGGEGLARGYWKRPELTSQKFV 398
Query: 434 EDGWL------KTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDA 487
++ ++ KTGD + +G + + RI +K G++V E+E++LL H I +
Sbjct: 399 DNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISET 458
Query: 488 AVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQL 526
AV +D + AY V L +Q+ QF + +L
Sbjct: 459 AVSVHKDHQEQPYLCAYFVSEKHIPL--EQLRQFSSEEL 495
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 93/394 (23%), Positives = 169/394 (42%), Gaps = 37/394 (9%)
Query: 148 RDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEELIECCDAADELPGCQLTQ 207
+SGAKL++SA+ +T ++P+ + S D +++++ P +
Sbjct: 95 ENSGAKLLLSAT----AVTVTDLPVRIVSED-------NLKDIFFTHKGNTPNPEHAVKG 143
Query: 208 DDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQN-DIFLCMIP------M 260
D+ I+Y+SG+TG KGV +T+ +S +W V+ + Q +FL P +
Sbjct: 144 DENFYIIYTSGSTGNPKGVQITYNCLVS---FTKWAVEDFNLQTGQVFLNQAPFSFDLSV 200
Query: 261 FHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDS 320
IY L+ ++ + DL A +E + P + L + +
Sbjct: 201 MDIYPSLVTGGTLWAIDKDMIARPK-DLFASLEQSDIQVWTSTPSFAEMCLMEASFSE-- 257
Query: 321 SYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESCGATTFMVSPKQARARSG 380
S L +++ L E+A + +FP + YG TE+ A T + ++ +
Sbjct: 258 SMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYK 317
Query: 381 SCGALSPTFYAK-----VVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAF--- 432
S P Y K ++ E P ++GE+ + P++ GY G+ E T AF
Sbjct: 318 SL----PVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMI 373
Query: 433 DEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPL 492
D + KTGD Y + G L+ R+ IK +GY++ E+E L + + A ++P+
Sbjct: 374 DGERAYKTGDAGYVEN-GLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPI 432
Query: 493 EDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQL 526
+ E +A VV S E ++ + +L
Sbjct: 433 KKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKEL 466
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 93/394 (23%), Positives = 169/394 (42%), Gaps = 37/394 (9%)
Query: 148 RDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEELIECCDAADELPGCQLTQ 207
+SGAKL++SA+ +T ++P+ + S D +++++ P +
Sbjct: 95 ENSGAKLLLSAT----AVTVTDLPVRIVSED-------NLKDIFFTHKGNTPNPEHAVKG 143
Query: 208 DDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQN-DIFLCMIP------M 260
D+ I+Y+SG+TG KGV +T+ +S +W V+ + Q +FL P +
Sbjct: 144 DENFYIIYTSGSTGNPKGVQITYNCLVS---FTKWAVEDFNLQTGQVFLNQAPFSFDLSV 200
Query: 261 FHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDS 320
IY L+ ++ + DL A +E + P + L + +
Sbjct: 201 MDIYPSLVTGGTLWAIDKDMIARPK-DLFASLEQSDIQVWTSTPSFAEMCLMEASFSE-- 257
Query: 321 SYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESCGATTFMVSPKQARARSG 380
S L +++ L E+A + +FP + YG TE+ A T + ++ +
Sbjct: 258 SMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYK 317
Query: 381 SCGALSPTFYAK-----VVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAF--- 432
S P Y K ++ E P ++GE+ + P++ GY G+ E T AF
Sbjct: 318 SL----PVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMI 373
Query: 433 DEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPL 492
D + KTGD Y + G L+ R+ IK +GY++ E+E L + + A ++P+
Sbjct: 374 DGERAYKTGDAGYVEN-GLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPI 432
Query: 493 EDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQL 526
+ E +A VV S E ++ + +L
Sbjct: 433 KKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKEL 466
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 114/470 (24%), Positives = 187/470 (39%), Gaps = 77/470 (16%)
Query: 70 LIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGA 129
++ E TY QL + +++A+ L A G + GD V +L L L G
Sbjct: 32 FLNKELEETXTYEQLDQHAKAIAATL-QAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGC 90
Query: 130 ILSPANSINTESEIVKQVR---DSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVS 186
I P E + K R +S +++ ++ ++K T + +N K +
Sbjct: 91 IAVPIYPPAQEKLLDKAQRIVTNSKPVIVLXIADHIKKFTADEL--------NTNPKFLK 142
Query: 187 VE----ELIECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRW 242
+ E IE ++ P + +D A + Y+SG+T KGV ++H N + +
Sbjct: 143 IPAIALESIELNRSSSWQP-TSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLN---- 197
Query: 243 TVDVTHAQND--IFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFD-LQAMIEAIKTYQ 299
+ + ND I +P H GL G+ + F LQ + +K
Sbjct: 198 KIFTSFHXNDETIIFSWLPPHHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLK--- 254
Query: 300 VNNIPLVPPVILG----LVKYC--------KDSSYLTSLRRVGSGAAPLSKELADEFRAK 347
+I I G YC K+ L+S +GA P+ +E + F
Sbjct: 255 --HITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETXEHFYQA 312
Query: 348 FPWVELRQG-----YGLTESC----GAT------TFMVSPKQAR------ARSGSCGAL- 385
F R+ YGL E+ G T T ++ +Q + A S G+
Sbjct: 313 FKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYK 372
Query: 386 -----SPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAF------DE 434
+P K++D +T + Q GE+W++S ++ +GY+ E T AF DE
Sbjct: 373 LVSSGNPIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDE 432
Query: 435 DG--WLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHP 482
+L+TGDL + E LY+ RIK+LI G P ++E L P
Sbjct: 433 RSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLXHSP 481
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 129/317 (40%), Gaps = 46/317 (14%)
Query: 208 DDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLA 267
+D A + Y+SG+T +GVI+TH + ++ + + D + +P +H GL
Sbjct: 175 NDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHD-GIKLRPGDRCVSWLPFYHDXGLV 233
Query: 268 FFATGLFCCGVTIVVMQRFDLQAM-IEAIKTYQVNN--IPLVPPVILGLVKYCKDSSYLT 324
F +++ ++ D ++ +K N + + PP L + + L
Sbjct: 234 GFLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLA 293
Query: 325 SL-----RRVGSGAAPLSKELADEFRAKFPWVELRQG-----YGLTESCGATTF------ 368
L R G GA P+S E +F F V YGL E+ A +F
Sbjct: 294 ELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFXPCYGLAENALAVSFSDEASG 353
Query: 369 ----------------MVSP-KQARARSG--SCGALSPTFYAKVVDTETRLALPPYQR-- 407
V+P + RA S +CG P ++ P +R
Sbjct: 354 VVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPE---HGIEIRNEAGXPVAERVV 410
Query: 408 GELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGY 467
G + + P++ GYFG++ + GWL TGDL Y +G+LY+ RIK+LI G
Sbjct: 411 GHICISGPSLXSGYFGDQ-VSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGR 468
Query: 468 QVAPAELEAVLLSHPNI 484
+ P ++E + P I
Sbjct: 469 NIWPQDIEYIAEQEPEI 485
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 113/468 (24%), Positives = 183/468 (39%), Gaps = 51/468 (10%)
Query: 79 VTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSIN 138
++Y +L +A L G KG VV + SL L + GA P +
Sbjct: 490 LSYRELDEEANRIARRL-QKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKL 548
Query: 139 TESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEELIECCDAAD 198
E I + DS A +++ E K +P T+ + +++ + A
Sbjct: 549 PEDRISYMLADSAAACLLTHQE--MKEQAAELPYTGTT--------LFIDDQTRFEEQAS 598
Query: 199 ELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMI 258
+ P + +D A I+Y+SGTTG KG I THAN I L++ + + D FL +
Sbjct: 599 D-PATAIDPNDPAYIMYTSGTTGKPKGNITTHAN---IQGLVKHVDYMAFSDQDTFLSVS 654
Query: 259 PM-FHIYGLAFFATGLFCCGVTIVVMQR-FDLQAMIEAIKTYQVNNIPLVPPVILGLVKY 316
F + F+A+ L + I D + + + I VN + + L
Sbjct: 655 NYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDA 714
Query: 317 CKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWV----------ELRQGYGLTE-SCGA 365
+D ++ LR + G RA P V +L YG TE + A
Sbjct: 715 GED--WMKGLRCILFGGE----------RASVPHVRKALRIMGPGKLINCYGPTEGTVFA 762
Query: 366 TTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQR-GELWLKSPTIMRGYFGN 424
T +V S G P A V + L P+ GEL + + +GY
Sbjct: 763 TAHVVHDLPDSISSLPIG--KPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNR 820
Query: 425 EEATAAAFDEDGW------LKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVL 478
+ T F E+ + +TGDL + +G + RI + +K G+++ E+E L
Sbjct: 821 ADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQL 880
Query: 479 LSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQL 526
+P + DA V+ E AY+V +QL+ + V + QL
Sbjct: 881 QEYPGVKDAVVVADRHESGDASINAYLVNR--TQLSAEDVKAHLKKQL 926
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 96/376 (25%), Positives = 158/376 (42%), Gaps = 46/376 (12%)
Query: 136 SINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEELIECCD 195
SI +E I K + SGA+L+I A+ + I + ++VS EEL+E
Sbjct: 85 SIPSE-RIAKIIESSGAELLIHAA---------GLSIDAVGQ---QIQTVSAEELLEN-- 129
Query: 196 AADELPGCQLTQD------DTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHA 249
G ++QD +T I+Y+SG+TG KGV ++ AN S + D +
Sbjct: 130 -----EGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWI--CADFPVS 182
Query: 250 QNDIFLCMIPMFHIYGLAFFATGLFCC---GVTIVVMQRFDL---QAMIEAIKTYQVNNI 303
IFL P + L+ C G T+ + + + + + E +K +N
Sbjct: 183 GGKIFLNQAP----FSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVW 238
Query: 304 PLVPPVI-LGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTES 362
P + + L+ L L +A +FP ++ YG TE+
Sbjct: 239 TSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEA 298
Query: 363 CGATTFMVSPKQARARSGS--CGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRG 420
A T + +RS S G P ++D E + LP ++GE+ + P++ RG
Sbjct: 299 TVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQ-PLPEGEKGEIVIAGPSVSRG 357
Query: 421 YFGNEEATAAAF--DEDGW-LKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAV 477
Y G E T AF E W +TGD + +G ++ R+ IK +GY++ E+E
Sbjct: 358 YLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-DGQIFCQGRLDFQIKLHGYRMELEEIEFH 416
Query: 478 LLSHPNILDAAVIPLE 493
+ + A VIP +
Sbjct: 417 VRQSQYVRSAVVIPYQ 432
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 103/466 (22%), Positives = 184/466 (39%), Gaps = 42/466 (9%)
Query: 77 ERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANS 136
ER TY QL R S+A+ + +L + V V + + +A+ G P +
Sbjct: 28 ERRTYGQLKRDSDSIAAFI-DSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVDV 86
Query: 137 INTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEELIECCDA 196
+ I+ + + LII+ E + +++ VS+ E IE
Sbjct: 87 HSAPERILAIIEIAKPSLIIAIEEFPLTIEGISL--------------VSLSE-IESAKL 131
Query: 197 ADELP---GCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDI 253
A E+P + DD I+++SGTTG KGV ++H N +S + +
Sbjct: 132 A-EMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQ 190
Query: 254 FLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRF--DLQAMIEAIKTYQV---NNIPLVPP 308
L P + ++A L G + + D + + I V + P
Sbjct: 191 MLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFAD 250
Query: 309 VILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESCGA--- 365
+ + +C+ + + +L L+ A + +FP ++ YG TE+ A
Sbjct: 251 MAMLSDDFCQ--AKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSA 308
Query: 366 ---TTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYF 422
T MV R G SPT+ ++D + + L ++GE+ + P + +GY
Sbjct: 309 IEITREMVD-NYTRLPIGYPKPDSPTY---IIDEDGK-ELSSGEQGEIIVTGPAVSKGYL 363
Query: 423 GNEEATAAA---FDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLL 479
N E TA A F TGD+ + L R+ IK+ GY++ ++ L
Sbjct: 364 NNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLN 423
Query: 480 SHPNILDAAVIPLEDEEAG-QIPMAYVVRAAGSQLTEDQVMQFVTS 524
P + A +P ++E Q +AY+V G + D+ ++ +
Sbjct: 424 QSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKA 469
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 126/321 (39%), Gaps = 30/321 (9%)
Query: 208 DDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPM------F 261
D A I +SSGTTG K + THA I +L + A FL P+
Sbjct: 164 DQIAYINFSSGTTGRPKAIACTHAG---ITRLCLGQSFLAFAPQMRFLVNSPLSFDAATL 220
Query: 262 HIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSS 321
I+G A G CC + + D + + I ++ L + LV D
Sbjct: 221 EIWG-ALLNGG--CC--VLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDL--DPD 273
Query: 322 YLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESCGATTF----MVSPKQARA 377
L LR++ +G LS + P + L GYG TE+ TTF +V+
Sbjct: 274 CLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTEN---TTFTCCHVVTDDDLEE 330
Query: 378 RSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDE--- 434
G ++D + P + GE+ + +GY + T A+F E
Sbjct: 331 DDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPY 390
Query: 435 DGWL----KTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVI 490
G L +TGD +D +G L + R +K NGY++ LE P ILD A++
Sbjct: 391 RGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALL 450
Query: 491 PLEDEEAGQIPMAYVVRAAGS 511
E Q+ A+ +A S
Sbjct: 451 VRERNGVKQLLCAWTGKADAS 471
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 98/410 (23%), Positives = 153/410 (37%), Gaps = 46/410 (11%)
Query: 64 AESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLA 123
A VAL+ A + +TY L+ LA L LGV G +V V LA
Sbjct: 88 APDAVALLHEA--DELTYGALNERANRLAHRLV-GLGVAPGTLVGVHLERGFDMVVALLA 144
Query: 124 IFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNK 183
+ G + + + + D+GA P++VTSR S
Sbjct: 145 VLKAGGGYTMLDPQFPVERLALSLEDTGA------------------PLLVTSRPLSGRL 186
Query: 184 SVSVEELIECCDAADELPGCQLTQ----DDTAAILYSSGTTGTSKGVILTHANFISIMQL 239
+ + +E +AA + P L +D A ++++SG+TG KGV+ H
Sbjct: 187 TGTTTLYVED-EAASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG 245
Query: 240 LRWTVDVTHAQNDIFLCMIPM-FHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTY 298
+ +++FL P+ + +GL F LF + Q D + E + +
Sbjct: 246 QDY---AGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARH 302
Query: 299 QVNNIPLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYG 358
V + L + LV ++ +R +G P S + R P + L GYG
Sbjct: 303 GVTMLQLSASLFNFLVDEVPEA--FEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYG 360
Query: 359 LTESCGATTFMVSPKQARARSGSCGALSPTFYAK---VVDTETRLALPPYQRGELWLKSP 415
ES G TT A SG+ + K V+D + + A GEL++
Sbjct: 361 PAESMGFTTHHAV--VAGDLSGTALPIGVPLAGKRAYVLDDDLKPAA-NGALGELYVAGA 417
Query: 416 TIMRGYFGNEEATAAAFDEDGW--------LKTGDLCYFDGEGFLYIVDR 457
+ GY TA F D + +TGDL +G L V R
Sbjct: 418 GLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGR 467
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 101/435 (23%), Positives = 165/435 (37%), Gaps = 77/435 (17%)
Query: 79 VTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSIN 138
+T++QL+R ++A L GD V + AP L Y L G I P +
Sbjct: 59 LTWSQLYRRTLNVAQELSRCGST--GDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQ 116
Query: 139 ---TESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEELIECCD 195
T+ + DS I++ S + + + V R + S+ +L++
Sbjct: 117 GGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ-----HVARRPGESPPSIIEVDLLDL-- 169
Query: 196 AADELPGCQLTQDD---TAAILYSSGTTGTSKGVILTHANF-ISIMQLLRW---TVDVTH 248
D G +D+ TA + Y+SG+T T GV+ +H N ++ QL D
Sbjct: 170 --DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVXSHQNVRVNFEQLXSGYFADTDGIP 227
Query: 249 AQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVV------MQRFDLQAMIEAIKTYQVNN 302
N + +P +H GL G V+ +QR + A + +
Sbjct: 228 PPNSALVSWLPFYHDXGLVIGICAPILGGYPAVLTSPVSFLQRPARWXHLXASDFHAFSA 287
Query: 303 IPLVPPVILGLVKYCKDSSY---LTSLRRVGSGA----APLSKELADEFRAKFPWVE--L 353
P L + D L ++ + SG+ A K AD F A+F E +
Sbjct: 288 APNF-AFELAARRTTDDDXAGRDLGNILTILSGSERVQAATIKRFADRF-ARFNLQERVI 345
Query: 354 RQGYGLTESCGATTFMVSPKQAR--------------ARSGSC---GALSPTFYA----- 391
R YGL E AT ++ + K + + C GA S Y
Sbjct: 346 RPSYGLAE---ATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYXLPRSP 402
Query: 392 --KVVDTETRLALPPYQRGELWLKSPTIMRGY----------FGNEEATAAAFDEDG-WL 438
++VD++T + P GE+W+ + GY FG + T + +G WL
Sbjct: 403 IVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWL 462
Query: 439 KTGDLCYF-DGEGFL 452
+TGD + DG+ F+
Sbjct: 463 RTGDSGFVTDGKXFI 477
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 99/439 (22%), Positives = 161/439 (36%), Gaps = 77/439 (17%)
Query: 79 VTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSIN 138
+T++QL+R ++A L GD V + AP L Y L G I P +
Sbjct: 59 LTWSQLYRRTLNVAQELSRCGST--GDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQ 116
Query: 139 ---TESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEELIECCD 195
T+ + DS I++ S + + + V R + S+ +L++
Sbjct: 117 GGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ-----HVARRPGESPPSIIEVDLLDL-- 169
Query: 196 AADELPGCQLTQDD---TAAILYSSGTTGTSKGVILTH----ANFISIMQLLRWTVDVTH 248
D G +D+ TA + Y+SG+T T GV+++H NF +M D
Sbjct: 170 --DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIP 227
Query: 249 AQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVV------MQRFDLQAMIEAIKTYQVNN 302
N + +P +H GL G V+ +QR + A + +
Sbjct: 228 PPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHAFSA 287
Query: 303 IPLVPPVILGLVKYCKD-------SSYLTSLRRVGSGAAPLSKELADEFRAKFPWVE--L 353
P L + D + LT L A K AD F A+F E +
Sbjct: 288 APNF-AFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRF-ARFNLQERVI 345
Query: 354 RQGYGLTESCGATTFMVSPKQAR--------------ARSGSC---GALSPTFY------ 390
R Y L E AT ++ + K + + C GA S Y
Sbjct: 346 RPSYWLAE---ATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSP 402
Query: 391 -AKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFD-----------EDGWL 438
++VD++T + P GE+W+ + GY+ + + F E WL
Sbjct: 403 IVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWL 462
Query: 439 KTGDLCYFDGEGFLYIVDR 457
+TGD F +G ++I+ R
Sbjct: 463 RTGD-SGFVTDGKMFIIGR 480
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 92/431 (21%), Positives = 169/431 (39%), Gaps = 36/431 (8%)
Query: 77 ERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANS 136
E TY +L+ + +A+ + HA G + V SL+ +I + I G P +
Sbjct: 54 EDWTYKKLNETANQVANLIIHA--SLHGRAIAVSLDRSLIAFAIIVGIXKSGNTYVPIEA 111
Query: 137 INTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEELIECCDA 196
+RDS A + ++ +++QS +++S ++ D
Sbjct: 112 GLPNDRKSFLLRDSRAAXAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQD---TSDI 168
Query: 197 ADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQN----- 251
+ P ++ A +LY+SG+TGT KGV ++ N S + ++
Sbjct: 169 LNNYP-----ENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGG 223
Query: 252 -DIFLCMIP-MFHIY-GLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPP 308
FLC+ F ++ G F A C VT + D + + V + +VP
Sbjct: 224 VGKFLCLASRAFDVHIGEXFLAWRFGLCAVTGERLSXLD--DLPRTFRELGVTHAGIVPS 281
Query: 309 VI--LGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTE-SCGA 365
++ GLV +D+ +L L G P ++++ + V L YG TE + G
Sbjct: 282 LLDQTGLVP--EDAPHLVYLGVGGEKXTPRTQQIW----SSSDRVALVNVYGPTEVTIGC 335
Query: 366 TTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNE 425
+ + P + + G A V+ + + GEL ++ + GY
Sbjct: 336 SAGRILPD---SDTRCIGHPLGDSVAHVLAPGSNEHVKKGXAGELVIEGSLVANGYLNRP 392
Query: 426 EATAAAFDEDG--WLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLS-HP 482
+A D +G +TGD+ D + + + R E +K G ++ E+ V+ S P
Sbjct: 393 DAKGFC-DINGRKXYRTGDIVRXDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSP 451
Query: 483 NILDAAVIPLE 493
+D + L
Sbjct: 452 TDIDVVTLLLN 462
>pdb|2Y4N|A Chain A, Paak1 In Complex With Phenylacetyl Adenylate
pdb|2Y4N|B Chain B, Paak1 In Complex With Phenylacetyl Adenylate
Length = 437
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 92/222 (41%), Gaps = 25/222 (11%)
Query: 207 QDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHI-YG 265
QD + I SSGTTG V T A+ + L+ ++ A+ H+ YG
Sbjct: 89 QDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRG------DKVHVSYG 142
Query: 266 LAFFATGLFC------CGVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKD 319
F GL G+T++ + ++ I+ ++ + I + P +L + +
Sbjct: 143 YGLFTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIER 202
Query: 320 SSY--LTSLRRVGS-GAAPLSKEL--ADEFRAKFPWVELRQGYGLTESCGATTFMVSPKQ 374
+ S R+G GA P + ++ A E R V++ YGL+E G V+ +
Sbjct: 203 QGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDI---YGLSEVMGPG---VASEC 256
Query: 375 ARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPT 416
+ G FY +++D ET LP + GEL S T
Sbjct: 257 VETKDGPT-IWEDHFYPEIIDPETGEVLPDGELGELVFTSLT 297
>pdb|2Y27|A Chain A, Crystal Structure Of Paak1 In Complex With Atp From
Burkholderia Cenocepacia
pdb|2Y27|B Chain B, Crystal Structure Of Paak1 In Complex With Atp From
Burkholderia Cenocepacia
Length = 437
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 91/222 (40%), Gaps = 25/222 (11%)
Query: 207 QDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHI-YG 265
QD + I SSGTTG V T A+ + L+ ++ A+ H+ YG
Sbjct: 89 QDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRG------DKVHVSYG 142
Query: 266 LAFFATGLFC------CGVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKD 319
F GL G+T++ + ++ I+ ++ + I + P L + +
Sbjct: 143 YGLFTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIXVTPSYXLSIADEIER 202
Query: 320 SSY--LTSLRRVGS-GAAPLSKE--LADEFRAKFPWVELRQGYGLTESCGATTFMVSPKQ 374
+ S R+G GA P + + +A E R V++ YGL+E G V+ +
Sbjct: 203 QGLDPVQSSLRIGIFGAEPWTNDXRVAIEQRXGIDAVDI---YGLSEVXGPG---VASEC 256
Query: 375 ARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPT 416
+ G FY +++D ET LP + GEL S T
Sbjct: 257 VETKDGPT-IWEDHFYPEIIDPETGEVLPDGELGELVFTSLT 297
>pdb|2FB1|A Chain A, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
pdb|2FB1|B Chain B, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
pdb|2FB1|C Chain C, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
pdb|2FB1|D Chain D, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
Length = 226
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 430 AAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELI-KHNGYQVAPAELEAVLLSHPNILDAA 488
A D D + + Y+ + I + +EL+ KHN Y V EL A++ HP +D A
Sbjct: 83 GAIDRDPGERVVSIAYY---ALININEYDRELVQKHNAYWVNINELPALIFDHPEXVDKA 139
>pdb|3IZB|H Chain H, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|O Chain O, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|O Chain O, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|W Chain W, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|W Chain W, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 130
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 374 QARARSGSCGALSPTFYAKVVDTETRLA--LPPYQRGELWLKSPTIMRGYFGNEEA 427
Q R CG +SP F K+ D E A LP Q G + L T G +EEA
Sbjct: 64 QLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVIL---TTSAGIMDHEEA 116
>pdb|3JYV|H Chain H, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 125
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 374 QARARSGSCGALSPTFYAKVVDTETRLA--LPPYQRGELWLKSPTIMRGYFGNEEA 427
Q R CG +SP F K+ D E A LP Q G + L T G +EEA
Sbjct: 59 QLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVIL---TTSAGIMDHEEA 111
>pdb|1S1H|H Chain H, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i
Length = 129
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 374 QARARSGSCGALSPTFYAKVVDTETRLA--LPPYQRGELWLKSPTIMRGYFGNEEA 427
Q R CG +SP F K+ D E A LP Q G + L T G +EEA
Sbjct: 63 QLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVIL---TTSAGIMDHEEA 115
>pdb|2Y4O|A Chain A, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
pdb|2Y4O|B Chain B, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
Length = 443
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 16/167 (9%)
Query: 260 MFHIYGLAFFATGLFC------CGVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGL 313
+ + +G F GL G +V M + ++ I+ ++ I + P +L L
Sbjct: 139 LHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNL 198
Query: 314 ----VKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESCGATTFM 369
V+ D + +SL+ GA P ++ L +E + ++ YGL+E G
Sbjct: 199 IDEMVRQGMDPAE-SSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGLSEVMGPG--- 253
Query: 370 VSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPT 416
V+ + + G FY +++D T LP +GEL S T
Sbjct: 254 VACECVETKDGPV-IWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLT 299
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,791,137
Number of Sequences: 62578
Number of extensions: 605066
Number of successful extensions: 1888
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1653
Number of HSP's gapped (non-prelim): 78
length of query: 526
length of database: 14,973,337
effective HSP length: 103
effective length of query: 423
effective length of database: 8,527,803
effective search space: 3607260669
effective search space used: 3607260669
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)