Query 041055
Match_columns 526
No_of_seqs 269 out of 2162
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 05:00:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 2.4E-80 8.3E-85 644.7 49.7 486 28-526 7-501 (536)
2 2d1s_A Luciferase, luciferin 4 100.0 7.6E-78 2.6E-82 626.9 48.7 469 48-526 25-508 (548)
3 3rix_A Luciferase, luciferin 4 100.0 7.3E-79 2.5E-83 635.6 38.4 486 27-526 5-506 (550)
4 3g7s_A Long-chain-fatty-acid-- 100.0 1.4E-76 4.7E-81 618.3 45.2 464 48-526 19-508 (549)
5 4fuq_A Malonyl COA synthetase; 100.0 1.7E-76 5.8E-81 610.7 43.8 452 59-526 10-466 (503)
6 3etc_A AMP-binding protein; ad 100.0 1.4E-75 4.6E-80 612.8 47.6 472 42-526 49-545 (580)
7 3r44_A Fatty acyl COA syntheta 100.0 3.8E-76 1.3E-80 610.1 39.4 460 45-526 13-479 (517)
8 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.3E-75 4.5E-80 609.2 43.0 458 48-525 25-495 (539)
9 1t5h_X 4-chlorobenzoyl COA lig 100.0 7.1E-75 2.4E-79 599.4 45.9 454 49-526 3-470 (504)
10 1pg4_A Acetyl-COA synthetase; 100.0 9.6E-75 3.3E-79 614.6 43.9 476 42-526 69-587 (652)
11 3tsy_A Fusion protein 4-coumar 100.0 2.1E-75 7.1E-80 648.3 40.1 491 27-526 45-548 (979)
12 1v25_A Long-chain-fatty-acid-C 100.0 3.7E-75 1.3E-79 606.1 39.0 464 48-526 18-502 (541)
13 3o83_A Peptide arylation enzym 100.0 8.1E-76 2.8E-80 611.5 33.3 461 48-524 30-503 (544)
14 3fce_A D-alanine--poly(phospho 100.0 3.2E-74 1.1E-78 595.9 38.7 457 48-526 1-470 (512)
15 1ry2_A Acetyl-coenzyme A synth 100.0 7.7E-74 2.6E-78 607.9 42.3 479 41-526 74-603 (663)
16 3c5e_A Acyl-coenzyme A synthet 100.0 2.1E-73 7.1E-78 595.5 43.6 462 48-526 37-528 (570)
17 3ivr_A Putative long-chain-fat 100.0 2.3E-74 7.8E-79 596.6 35.3 455 48-526 6-467 (509)
18 1amu_A GRSA, gramicidin synthe 100.0 5E-73 1.7E-77 591.7 44.8 446 48-526 39-495 (563)
19 4gr5_A Non-ribosomal peptide s 100.0 1.9E-74 6.6E-79 604.5 32.9 451 48-526 75-537 (570)
20 3e7w_A D-alanine--poly(phospho 100.0 3.6E-73 1.2E-77 587.7 41.1 456 48-526 1-469 (511)
21 3rg2_A Enterobactin synthase c 100.0 3.9E-72 1.3E-76 592.2 48.3 456 48-524 27-497 (617)
22 2v7b_A Benzoate-coenzyme A lig 100.0 2.5E-72 8.6E-77 584.1 43.4 461 48-526 23-498 (529)
23 3nyq_A Malonyl-COA ligase; A/B 100.0 2.7E-73 9.2E-78 586.7 35.3 444 48-526 22-474 (505)
24 3l8c_A D-alanine--poly(phospho 100.0 5.9E-73 2E-77 588.0 36.0 458 48-526 4-478 (521)
25 4dg8_A PA1221; ANL superfamily 100.0 9.9E-72 3.4E-76 586.7 35.4 429 48-505 27-465 (620)
26 3ipl_A 2-succinylbenzoate--COA 100.0 2.1E-71 7.2E-76 573.5 36.0 450 49-526 2-463 (501)
27 3kxw_A Saframycin MX1 syntheta 100.0 8.4E-71 2.9E-75 581.0 31.6 457 48-526 11-529 (590)
28 3ite_A SIDN siderophore synthe 100.0 5.7E-70 2E-74 570.6 29.6 458 48-526 20-508 (562)
29 2vsq_A Surfactin synthetase su 100.0 1.4E-68 4.6E-73 607.9 40.9 451 48-526 464-926 (1304)
30 3gqw_A Fatty acid AMP ligase; 100.0 1.2E-68 4.1E-73 563.3 36.5 455 48-525 21-525 (576)
31 3t5a_A Long-chain-fatty-acid-- 100.0 3.2E-62 1.1E-66 502.8 26.1 387 48-457 24-480 (480)
32 3qov_A Phenylacetate-coenzyme 100.0 4.4E-48 1.5E-52 391.9 25.5 302 204-526 81-401 (436)
33 4gs5_A Acyl-COA synthetase (AM 100.0 1.1E-48 3.8E-53 384.1 18.2 281 207-526 36-320 (358)
34 2y27_A Phenylacetate-coenzyme 100.0 4.2E-47 1.4E-51 384.9 22.7 303 204-526 86-403 (437)
35 2y4o_A Phenylacetate-coenzyme 100.0 8.4E-47 2.9E-51 383.4 21.9 303 204-526 88-407 (443)
36 3hgu_A EHPF; phenazine, antibi 100.0 1.1E-32 3.9E-37 272.5 15.7 238 205-467 88-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.2 4.2E-11 1.5E-15 94.9 8.6 60 456-515 1-60 (109)
38 3gxs_A Phenylacetate-coenzyme 99.2 4.3E-11 1.5E-15 94.7 7.1 69 456-525 1-73 (109)
39 4eql_A 4-substituted benzoates 99.1 5.3E-10 1.8E-14 113.4 13.4 143 323-490 296-464 (581)
40 4b2g_A GH3-1 auxin conjugating 99.1 5.4E-10 1.8E-14 113.5 12.4 160 323-508 301-493 (609)
41 4epl_A Jasmonic acid-amido syn 98.9 2E-08 6.7E-13 101.7 16.3 161 323-508 301-488 (581)
42 2y27_A Phenylacetate-coenzyme 91.3 1.3 4.5E-05 43.5 11.4 86 78-165 109-196 (437)
43 2y4o_A Phenylacetate-coenzyme 90.8 1.5 5.2E-05 43.2 11.3 86 78-165 111-198 (443)
44 3qov_A Phenylacetate-coenzyme 89.6 1.7 6E-05 42.6 10.5 86 78-165 105-192 (436)
45 3ezx_A MMCP 1, monomethylamine 74.8 40 0.0014 29.1 11.7 92 251-344 93-195 (215)
46 3hgu_A EHPF; phenazine, antibi 71.2 9.2 0.00031 36.3 7.5 86 78-166 110-220 (369)
47 2d1s_A Luciferase, luciferin 4 67.1 22 0.00076 35.8 9.7 87 77-166 210-298 (548)
48 3ni2_A 4-coumarate:COA ligase; 64.6 30 0.001 34.7 10.1 100 205-313 34-135 (536)
49 3ipl_A 2-succinylbenzoate--COA 62.8 46 0.0016 32.9 11.0 84 78-166 182-266 (501)
50 3g7s_A Long-chain-fatty-acid-- 61.2 48 0.0016 33.3 10.9 105 206-314 32-139 (549)
51 1mdb_A 2,3-dihydroxybenzoate-A 59.0 51 0.0017 33.0 10.6 84 77-165 200-286 (539)
52 3t5a_A Long-chain-fatty-acid-- 58.7 44 0.0015 32.7 10.0 106 206-315 37-148 (480)
53 3o83_A Peptide arylation enzym 58.1 59 0.002 32.6 10.9 84 77-165 209-295 (544)
54 3fce_A D-alanine--poly(phospho 57.4 36 0.0012 33.8 9.1 85 77-165 162-249 (512)
55 1ry2_A Acetyl-coenzyme A synth 56.6 59 0.002 33.6 10.8 98 206-308 95-195 (663)
56 3e7w_A D-alanine--poly(phospho 56.0 38 0.0013 33.6 9.0 85 78-166 162-249 (511)
57 3rix_A Luciferase, luciferin 4 53.2 33 0.0011 34.5 8.1 88 77-166 208-296 (550)
58 3r44_A Fatty acyl COA syntheta 51.3 88 0.003 31.0 10.8 84 77-166 188-273 (517)
59 2cvi_A 75AA long hypothetical 50.3 31 0.0011 24.3 5.3 45 471-525 15-59 (83)
60 1amu_A GRSA, gramicidin synthe 50.1 73 0.0025 32.1 10.1 96 206-312 52-149 (563)
61 1v25_A Long-chain-fatty-acid-C 48.2 56 0.0019 32.7 8.8 86 78-165 195-281 (541)
62 3etc_A AMP-binding protein; ad 46.7 57 0.0019 33.1 8.6 97 206-308 69-167 (580)
63 3ivr_A Putative long-chain-fat 45.6 1.2E+02 0.0042 29.8 10.8 83 78-166 179-263 (509)
64 4gr5_A Non-ribosomal peptide s 45.0 83 0.0028 31.7 9.6 92 206-308 88-181 (570)
65 3tbh_A O-acetyl serine sulfhyd 42.2 61 0.0021 30.1 7.4 91 67-160 36-127 (334)
66 1t5h_X 4-chlorobenzoyl COA lig 42.1 75 0.0026 31.4 8.6 84 78-166 172-259 (504)
67 2v7b_A Benzoate-coenzyme A lig 41.7 84 0.0029 31.2 8.9 85 78-166 202-289 (529)
68 3rg2_A Enterobactin synthase c 41.2 1.5E+02 0.005 30.2 10.8 84 77-165 202-288 (617)
69 2zbc_A 83AA long hypothetical 41.0 44 0.0015 23.3 4.9 45 471-525 15-59 (83)
70 3tsy_A Fusion protein 4-coumar 40.2 1.1E+02 0.0036 33.4 10.0 97 205-310 73-171 (979)
71 4fuq_A Malonyl COA synthetase; 39.8 84 0.0029 31.0 8.5 81 227-309 28-110 (503)
72 3kxw_A Saframycin MX1 syntheta 39.5 68 0.0023 32.4 7.9 84 77-164 185-273 (590)
73 2djw_A Probable transcriptiona 39.1 42 0.0014 24.1 4.6 21 471-491 15-35 (92)
74 3vc3_A Beta-cyanoalnine syntha 37.3 74 0.0025 29.7 7.1 91 67-160 51-142 (344)
75 3c5e_A Acyl-coenzyme A synthet 37.3 79 0.0027 31.9 7.9 85 78-166 225-312 (570)
76 1pg4_A Acetyl-COA synthetase; 36.3 97 0.0033 31.9 8.5 86 78-166 275-365 (652)
77 4f0h_B Ribulose bisphosphate c 35.8 99 0.0034 24.3 6.2 42 471-513 65-107 (138)
78 1y80_A Predicted cobalamin bin 35.7 2E+02 0.0069 24.3 9.6 88 252-341 90-186 (210)
79 3l8c_A D-alanine--poly(phospho 32.7 2.3E+02 0.008 27.8 10.5 87 77-165 163-252 (521)
80 4dg8_A PA1221; ANL superfamily 31.9 1.1E+02 0.0036 31.4 7.9 96 78-178 183-286 (620)
81 4gs5_A Acyl-COA synthetase (AM 30.7 84 0.0029 29.4 6.4 81 78-165 56-137 (358)
82 3nyq_A Malonyl-COA ligase; A/B 30.3 2E+02 0.0067 28.3 9.4 84 77-166 173-258 (505)
83 3gqw_A Fatty acid AMP ligase; 29.2 2E+02 0.0069 28.7 9.5 85 227-313 49-142 (576)
84 4h1h_A LMO1638 protein; MCCF-l 28.9 1.5E+02 0.0051 27.4 7.6 60 100-159 8-86 (327)
85 3zxw_B Ribulose bisphosphate c 27.7 1.3E+02 0.0045 23.0 5.6 40 471-512 70-109 (118)
86 1rbl_M Ribulose 1,5 bisphospha 26.8 1.6E+02 0.0055 22.1 5.9 38 471-510 71-108 (109)
87 2l66_A SSO7C4, transcriptional 25.9 65 0.0022 20.4 3.2 21 94-114 19-39 (53)
88 1zsy_A Mitochondrial 2-enoyl t 25.4 1.7E+02 0.0057 27.3 7.5 80 78-158 139-223 (357)
89 1svd_M Ribulose bisphosphate c 24.7 1.7E+02 0.0058 22.0 5.7 38 471-510 73-110 (110)
90 1wdd_S Ribulose bisphosphate c 24.7 1.6E+02 0.0054 22.9 5.6 40 471-512 83-122 (128)
91 4e5s_A MCCFLIKE protein (BA_56 24.5 2E+02 0.0069 26.6 7.6 60 100-159 8-86 (331)
92 3ijw_A Aminoglycoside N3-acety 24.3 54 0.0018 29.4 3.4 24 89-113 18-41 (268)
93 3ju7_A Putative PLP-dependent 24.2 1.6E+02 0.0054 27.7 7.1 63 91-157 66-135 (377)
94 3ite_A SIDN siderophore synthe 23.6 1.4E+02 0.0049 29.7 7.1 87 78-164 194-285 (562)
95 3sr3_A Microcin immunity prote 22.8 1.9E+02 0.0064 26.9 7.0 60 100-159 9-87 (336)
96 2nyg_A YOKD protein; PFAM02522 22.5 60 0.0021 29.2 3.4 23 91-114 18-40 (273)
97 3sma_A FRBF; N-acetyl transfer 22.5 61 0.0021 29.3 3.4 32 75-114 18-49 (286)
98 4aec_A Cysteine synthase, mito 22.5 2E+02 0.007 27.7 7.4 61 99-159 168-229 (430)
99 3tla_A MCCF; serine protease, 22.4 2E+02 0.0067 27.2 7.1 60 100-159 39-117 (371)
100 3hs3_A Ribose operon repressor 22.4 2.9E+02 0.0098 24.1 8.2 83 92-178 2-94 (277)
101 1yfb_A Transition state regula 22.4 66 0.0023 21.1 2.7 21 94-114 29-49 (59)
102 1bwv_S Rubisco, protein (ribul 21.8 2.6E+02 0.0089 22.0 6.4 41 471-512 65-106 (138)
103 3tqh_A Quinone oxidoreductase; 21.7 3E+02 0.01 24.9 8.4 75 78-158 125-203 (321)
104 1z7w_A Cysteine synthase; tran 21.5 2.3E+02 0.0079 25.9 7.5 62 99-160 60-122 (322)
105 4ap8_A Molybdopterin synthase 20.4 1.1E+02 0.0039 24.0 4.2 65 456-521 4-69 (135)
106 2q3b_A Cysteine synthase A; py 20.0 2.9E+02 0.01 25.0 7.8 79 78-160 43-122 (313)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=2.4e-80 Score=644.74 Aligned_cols=486 Identities=38% Similarity=0.642 Sum_probs=419.7
Q ss_pred ceeecCCCCCCCCCCCCCCCCChhhhhcccCCCCCCCCCceEEEeCCCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 041055 28 GIYHSLIQLGENYRIPTRTDLDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVV 107 (526)
Q Consensus 28 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V 107 (526)
.++.+.. ++..+|.+ .++++++.++ ++.+| +++|+++..+++++||+||.++++++|++|.+ +|+++||+|
T Consensus 7 ~i~~~~~---~~~~~p~~--~~l~~~l~~~-a~~~p--~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V 77 (536)
T 3ni2_A 7 FIFRSKL---PDIYIPKN--LPLHSYVLEN-LSNHS--SKPCLINGANGDVYTYADVELTARRVASGLNK-IGIQQGDVI 77 (536)
T ss_dssp CCBCCSS---CCCCCCSS--CCHHHHHTTT-GGGST--TSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEE
T ss_pred eEEecCC---CCCCCCCC--CcHHHHHHHH-hhcCC--CceEEEECCCCCEEEHHHHHHHHHHHHHHHHH-cCCCCCCEE
Confidence 3455554 34445533 7899999888 67777 79999997667899999999999999999998 999999999
Q ss_pred EEECCCCCchHHHHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhHHHhhc----CCCCEEEEcCCCCCCC
Q 041055 108 FVLAPNSLLYPSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTK----VNVPIIVTSRDQSNNK 183 (526)
Q Consensus 108 ~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~~i~~~~~~~~~~ 183 (526)
+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++......+.. ...+++.++.. ...
T Consensus 78 ~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 155 (536)
T 3ni2_A 78 MLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSA--PDG 155 (536)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCC--CTT
T ss_pred EEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCC--CCC
Confidence 999999999999999999999999999999999999999999999999999876554432 24455554432 223
Q ss_pred cchHHHHhhhcCCCCCCCCCCCCCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhh--cccCCCCcEEEEeCChh
Q 041055 184 SVSVEELIECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTV--DVTHAQNDIFLCMIPMF 261 (526)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~--~~~~~~~~~~l~~~p~~ 261 (526)
...+.++...... ..+.....++++++|+|||||||.||||+++|+++.+.+....... .+...+++++++.+|++
T Consensus 156 ~~~~~~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 233 (536)
T 3ni2_A 156 CLHFSELTQADEN--EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMF 233 (536)
T ss_dssp CEETHHHHTSCGG--GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTT
T ss_pred ccCHHHHhhcccc--ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChH
Confidence 3444444332211 1222256789999999999999999999999999988776644321 12367899999999999
Q ss_pred HHHHHHHHHHhhcccCcEEEEecCCCHHHHHHHHHhcCccEeecccHHHHHHHhh-ccCCCCCCCceEEEEecCCCCHHH
Q 041055 262 HIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKY-CKDSSYLTSLRRVGSGAAPLSKEL 340 (526)
Q Consensus 262 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~l~~lr~v~~gG~~l~~~~ 340 (526)
|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++. .....+++++|.+++||+++++++
T Consensus 234 h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~ 313 (536)
T 3ni2_A 234 HIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKEL 313 (536)
T ss_dssp SHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHH
T ss_pred HHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHH
Confidence 9999977788899999999999999999999999999999999999999999987 345678999999999999999999
Q ss_pred HHHHHHhCCCCceeeccccccccceeecccC--cccccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceEEEeccccc
Q 041055 341 ADEFRAKFPWVELRQGYGLTESCGATTFMVS--PKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIM 418 (526)
Q Consensus 341 ~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~--~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~ 418 (526)
.+++++.+|++++++.||+||++.+++.+.. .......++++|+|+++++++|+|+++++++++|+.|||+|+||+++
T Consensus 314 ~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~ 393 (536)
T 3ni2_A 314 EDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIM 393 (536)
T ss_dssp HHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSC
T ss_pred HHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccc
Confidence 9999999999999999999999877655421 12222347899999999999999998999999999999999999999
Q ss_pred cccCCCHHHHhcccCCCCeeeccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCC
Q 041055 419 RGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAG 498 (526)
Q Consensus 419 ~gy~~~~~~t~~~~~~~~~~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~ 498 (526)
+|||++|+.|.+.|+.+|||+|||+|++|+||+++++||.||+||++|++|+|.|||++|.+||+|.+|+|++++++..|
T Consensus 394 ~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g 473 (536)
T 3ni2_A 394 KGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAG 473 (536)
T ss_dssp SEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTE
T ss_pred hhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeCCCCCCCHHHHHHHHHhcC
Q 041055 499 QIPMAYVVRAAGSQLTEDQVMQFVTSQL 526 (526)
Q Consensus 499 ~~~~a~vv~~~~~~~~~~~l~~~l~~~l 526 (526)
+.++|+|+..++...++++|+++|+++|
T Consensus 474 ~~~~a~vv~~~~~~~~~~~l~~~l~~~l 501 (536)
T 3ni2_A 474 EVPVAFVVKSEKSQATEDEIKQYISKQV 501 (536)
T ss_dssp EEEEEEEEECTTCCCCHHHHHHHHHTTS
T ss_pred ceeEEEEEecCCCCCCHHHHHHHHHHhc
Confidence 9999999999988899999999999875
No 2
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=7.6e-78 Score=626.91 Aligned_cols=469 Identities=32% Similarity=0.518 Sum_probs=400.2
Q ss_pred CChhh-hhcccCCCCCCCCCceEEEeCCCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHHHHHHHHH
Q 041055 48 LDTAT-CVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFS 126 (526)
Q Consensus 48 ~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~ 126 (526)
.++.+ ++..+ ++.+ +++|+++...++++||+||.++++++|++|.+ +|+++||+|+++++|+++|++++|||++
T Consensus 25 ~~l~~~~l~~~-~~~~---~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~la~~~ 99 (548)
T 2d1s_A 25 AGTQLRKYMER-YAKL---GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQN-YGLVVDGRIALCSENCEEFFIPVIAGLF 99 (548)
T ss_dssp HHHHHHHHHHH-HHHH---TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEEECSSCTTTHHHHHHHHH
T ss_pred CcHHHHHHHhh-hccc---CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHHHHHh
Confidence 57888 77776 4433 58999985457899999999999999999998 9999999999999999999999999999
Q ss_pred cCCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhHHHhhcC------CCCEEEEcCCCCCCCcchHHHHhhhcCCCCCC
Q 041055 127 LGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKV------NVPIIVTSRDQSNNKSVSVEELIECCDAADEL 200 (526)
Q Consensus 127 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (526)
+|++++|++|.++.+++.+++++++++++|++.+....+... ..+++.++..........+.++...... ...
T Consensus 100 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 178 (548)
T 2d1s_A 100 IGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTP-PGF 178 (548)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHHHHHHHTSC-TTC
T ss_pred hCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccHHHHHhcCcc-ccC
Confidence 999999999999999999999999999999998766554321 1234443322111112334444332211 101
Q ss_pred CCCCC------CCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhh-cccCCCCcEEEEeCChhHHHHHHHHHHhh
Q 041055 201 PGCQL------TQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTV-DVTHAQNDIFLCMIPMFHIYGLAFFATGL 273 (526)
Q Consensus 201 ~~~~~------~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~g~~~~~~~~ 273 (526)
+.... .++++++++|||||||.||||+++|+++.+.+......+ .....+++++++.+|++|.+|+...++.+
T Consensus 179 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~ 258 (548)
T 2d1s_A 179 QASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYL 258 (548)
T ss_dssp CGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHH
T ss_pred CcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 11112 238999999999999999999999999998877765541 12367899999999999999985556777
Q ss_pred cccCcEEEEecCCCHHHHHHHHHhcCccEeecccHHHHHHHhh-ccCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCc
Q 041055 274 FCCGVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKY-CKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVE 352 (526)
Q Consensus 274 l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~ 352 (526)
+ .|+++++.+.++++.+++.|+++++|+++++|+++..|++. .....+++++|.+++||+++++++.+++.+.||++.
T Consensus 259 l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~ 337 (548)
T 2d1s_A 259 I-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG 337 (548)
T ss_dssp H-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSC
T ss_pred h-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHHcCCCc
Confidence 7 99999999999999999999999999999999999999987 334567899999999999999999999999998889
Q ss_pred eeeccccccccceeecccCcccccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceEEEeccccccccCCCHHHHhccc
Q 041055 353 LRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAF 432 (526)
Q Consensus 353 l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~ 432 (526)
+++.||+||++..++..... ....+++|+|+|+++++|+|+++++++++|+.|||+|+||++++|||++|+.|.+.|
T Consensus 338 i~~~YG~TE~~~~~~~~~~~---~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f 414 (548)
T 2d1s_A 338 VRQGYGLTETTSAIIITPEG---DDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELI 414 (548)
T ss_dssp CEEEEECGGGSSEEEECCTT---CCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHB
T ss_pred eeeccccccccceeeecCcc---cCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcc
Confidence 99999999998776653221 123789999999999999998889999999999999999999999999999999999
Q ss_pred CCCCeeeccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCCCCC
Q 041055 433 DEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQ 512 (526)
Q Consensus 433 ~~~~~~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~~ 512 (526)
+.+|||+|||+|++|+||+++++||.||+||++|++|+|.|||++|.+||+|.+|+|++.+++..|+.++|+|+++++..
T Consensus 415 ~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~ 494 (548)
T 2d1s_A 415 DEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKN 494 (548)
T ss_dssp CTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC
T ss_pred cCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999989999999999998888
Q ss_pred CCHHHHHHHHHhcC
Q 041055 513 LTEDQVMQFVTSQL 526 (526)
Q Consensus 513 ~~~~~l~~~l~~~l 526 (526)
.++++|+++|+++|
T Consensus 495 ~~~~~l~~~~~~~l 508 (548)
T 2d1s_A 495 MTEKEVMDYVASQV 508 (548)
T ss_dssp CCHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHhc
Confidence 88999999999875
No 3
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=7.3e-79 Score=635.61 Aligned_cols=486 Identities=33% Similarity=0.517 Sum_probs=340.3
Q ss_pred CceeecCCCCCCCCCCCCCCCCChhhhhcccCCCCCCCCCceEE---EeCCCCceeCHHHHHHHHHHHHHHHHHhcCCCC
Q 041055 27 TGIYHSLIQLGENYRIPTRTDLDTATCVLSRFPHPDLAESRVAL---IDSATHERVTYAQLHRSIRSLASGLYHALGVRK 103 (526)
Q Consensus 27 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~---~~~~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~ 103 (526)
.+++.++. +..+.+. .|+.+++... ++++| +++|+ ++...++++||+||.++++++|++|++ +|+++
T Consensus 5 ~~~~~~~~---~~~~~~~---~tl~~~l~~~-a~~~p--~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~ 74 (550)
T 3rix_A 5 KNIKKGPA---PFYPLED---GTAGEQLHKA-MKRYA--LVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-YGLNT 74 (550)
T ss_dssp GGSEECCC---CSSCCCC---SCHHHHHHHH-HHHHH--TSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCT
T ss_pred cceeeCCC---CCCCccc---CCHHHHHHHH-HHhCC--CCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHH-hCCCC
Confidence 34555554 4444554 7899999887 55555 45554 476567899999999999999999998 89999
Q ss_pred CCEEEEECCCCCchHHHHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhHHHhhcC-----CCC-EEEEcC
Q 041055 104 GDVVFVLAPNSLLYPSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKV-----NVP-IIVTSR 177 (526)
Q Consensus 104 gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~-~i~~~~ 177 (526)
||+|+++++|+++|++++|||+++|++++|++|.++.+++.+++++++++++|++.+....+... ... +++++.
T Consensus 75 gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (550)
T 3rix_A 75 NHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDS 154 (550)
T ss_dssp TCEEEEECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTC
T ss_pred CCEEEEEcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999998876654321 223 333333
Q ss_pred CCCCCCcchHHHHhhhcCCC-----CCCCCCCCCCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhh-cccCCCC
Q 041055 178 DQSNNKSVSVEELIECCDAA-----DELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTV-DVTHAQN 251 (526)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-~~~~~~~ 251 (526)
........++.++....... ...+.....++++++|+|||||||.||||+++|+++...+......+ .....++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~ 234 (550)
T 3rix_A 155 KTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPD 234 (550)
T ss_dssp SSCBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTT
T ss_pred CccccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCC
Confidence 32233444555544332211 11111123457899999999999999999999999988776655432 2346789
Q ss_pred cEEEEeCChhHHHHHHHHHHhhcccCcEEEEecCCCHHHHHHHHHhcCccEeecccHHHHHHHhh-ccCCCCCCCceEEE
Q 041055 252 DIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKY-CKDSSYLTSLRRVG 330 (526)
Q Consensus 252 ~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~l~~lr~v~ 330 (526)
+++++.+|++|.+|+ ...+.++..|+++++.+.+++..+++.++++++|+++++|+++..|++. .....+++++|.++
T Consensus 235 ~~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~ 313 (550)
T 3rix_A 235 TAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIA 313 (550)
T ss_dssp CEEEECSCTTSHHHH-HHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEE
T ss_pred cEEEEechHHHHHHH-HHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEE
Confidence 999999999999998 6677889999999999999999999999999999999999999999987 44567899999999
Q ss_pred EecCCCCHHHHHHHHHhCCCCceeeccccccccceeecccCcccccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceE
Q 041055 331 SGAAPLSKELADEFRAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGEL 410 (526)
Q Consensus 331 ~gG~~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel 410 (526)
+||+++++++.+++.+.++...+++.||+||++..++...... ...+++|+|+|+++++|+|+++++++++|+.|||
T Consensus 314 ~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~---~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl 390 (550)
T 3rix_A 314 SGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD---DKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGEL 390 (550)
T ss_dssp ECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTC---CCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEE
T ss_pred EecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCC---CCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEE
Confidence 9999999999999999996556999999999998776544322 2378999999999999999888999999999999
Q ss_pred EEeccccccccCCCHHHHhcccCCCCeeeccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEE
Q 041055 411 WLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVI 490 (526)
Q Consensus 411 ~v~~~~~~~gy~~~~~~t~~~~~~~~~~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv 490 (526)
+|+||+++.|||++|+.|.+.|+.+|||+|||+|++|+||+++++||.||+||++|++|+|.|||++|.+||+|.+|+|+
T Consensus 391 ~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv 470 (550)
T 3rix_A 391 CVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVA 470 (550)
T ss_dssp EEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----------------------------------
T ss_pred EEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhcC
Q 041055 491 PLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQL 526 (526)
Q Consensus 491 ~~~~~~~~~~~~a~vv~~~~~~~~~~~l~~~l~~~l 526 (526)
+++++..|+.++|+|+++++...++++++++++++|
T Consensus 471 ~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l 506 (550)
T 3rix_A 471 GLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQV 506 (550)
T ss_dssp ------------------------------------
T ss_pred EeecCCCCceEEEEEEecCCCCCCHHHHHHHHHHhc
Confidence 999999999999999999888888899999998765
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=1.4e-76 Score=618.29 Aligned_cols=464 Identities=28% Similarity=0.440 Sum_probs=384.2
Q ss_pred CChhhhhcccCCCCCCCCCceEEEeCCC------CceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHHHH
Q 041055 48 LDTATCVLSRFPHPDLAESRVALIDSAT------HERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSIC 121 (526)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~------~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~~~ 121 (526)
.++.+.+... ++.+| +++|+++.+. .+++||+||.++++++|++|.+ +|+++||+|+++++|++++++++
T Consensus 19 ~~l~~~l~~~-a~~~p--~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~ 94 (549)
T 3g7s_A 19 ISLADRIDAA-AEKFG--EKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISR-KGVRKGEHVGVCIPNSIDYVMTI 94 (549)
T ss_dssp CCTTHHHHHH-HHHHT--TSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCHHHHHHHH-HHhCC--CceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHH
Confidence 7888988887 66777 7999998542 1899999999999999999998 99999999999999999999999
Q ss_pred HHHHHcCCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhHHHhh----cCCCCEEEEcCCCCCCCcchHHHHhhhcCCC
Q 041055 122 LAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLT----KVNVPIIVTSRDQSNNKSVSVEELIECCDAA 197 (526)
Q Consensus 122 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 197 (526)
|||+++|++++|++|.++.+++.+++++++++++|++......+. ......+++... ....+.+........
T Consensus 95 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 170 (549)
T 3g7s_A 95 YALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGG----EVNSLSEVMDSGSED 170 (549)
T ss_dssp HHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETC----SSSCHHHHHHHSCSC
T ss_pred HHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCC----CCcCHHHHHhcCccc
Confidence 999999999999999999999999999999999999987766543 223333333221 223344444332221
Q ss_pred CCCCCCCCCC-CCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhhcccCCCCcEEEEeCChhHHHHHHHHHHhhccc
Q 041055 198 DELPGCQLTQ-DDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCC 276 (526)
Q Consensus 198 ~~~~~~~~~~-~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~ 276 (526)
.+.....+ +++++|+|||||||.||||+++|+++.+.+......++ +.++|+++..+|++|.+++. .++.++..
T Consensus 171 --~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~~d~~~~~~p~~~~~~~~-~~~~~l~~ 245 (549)
T 3g7s_A 171 --FENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATG--LSHMDTIVGCMPMFHSAEFG-LVNLMVTV 245 (549)
T ss_dssp --CCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHC--CCTTCEEECCSCTTSHHHHH-HHTTHHHH
T ss_pred --cccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcC--CCCCCEEEEeCcHHHHHHHH-HHHHHHhc
Confidence 11113333 89999999999999999999999999998888777766 67899999999999999984 47888999
Q ss_pred CcEEEEecCCCHHHHHHHHHhcCccEeecccHHHHHHHhhc-c--CCCCCCCceEEEEecCCCCHHHHHHHHHh----CC
Q 041055 277 GVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYC-K--DSSYLTSLRRVGSGAAPLSKELADEFRAK----FP 349 (526)
Q Consensus 277 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~--~~~~l~~lr~v~~gG~~l~~~~~~~~~~~----~~ 349 (526)
|+++++.+.+++..+++.++++++|+++++|+++..|++.. . ...+++++|.+++||+++++++.+++.+. ++
T Consensus 246 G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~ 325 (549)
T 3g7s_A 246 GNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCN 325 (549)
T ss_dssp CCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSS
T ss_pred CceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999872 2 23678999999999999999999999988 53
Q ss_pred --CCceeeccccccccceeecccCcccccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceEEEeccccccccCCCHHH
Q 041055 350 --WVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEA 427 (526)
Q Consensus 350 --~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~ 427 (526)
.+++++.||+||++.+++....... ...+++|+|+++++++|+|+++++++++|+.|||+|+||++++|||++|+.
T Consensus 326 ~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~ 403 (549)
T 3g7s_A 326 NPRLRHNQIWGMTEACPMVTTNPPLRL--DKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKE 403 (549)
T ss_dssp CTTCEEEEEEECGGGSSEEEECCGGGG--GGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTG
T ss_pred CccccccceEeccccchhhhcCCcccc--CcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhh
Confidence 3899999999999987765443322 237899999999999999988999999999999999999999999999999
Q ss_pred HhcccC--CCC--eeeccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEEE
Q 041055 428 TAAAFD--EDG--WLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMA 503 (526)
Q Consensus 428 t~~~~~--~~~--~~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a 503 (526)
|+++|. .+| ||+|||+|++|+||+++++||.||+||++|++|+|.|||++|.+||+|.+|+|++.+++..|+.++|
T Consensus 404 t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a 483 (549)
T 3g7s_A 404 NQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKA 483 (549)
T ss_dssp GGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEE
T ss_pred hhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEE
Confidence 999983 567 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCC--CCCCHHHHHHHHHhcC
Q 041055 504 YVVRAAG--SQLTEDQVMQFVTSQL 526 (526)
Q Consensus 504 ~vv~~~~--~~~~~~~l~~~l~~~l 526 (526)
+|+++++ ...++++|+++|+++|
T Consensus 484 ~vv~~~~~~~~~~~~~l~~~l~~~L 508 (549)
T 3g7s_A 484 FIVLKPEYRGKVDEEDIIEWVRERI 508 (549)
T ss_dssp EEEECSTTTTSCCHHHHHHHHHTTC
T ss_pred EEEECCCccCcCCHHHHHHHHHHhc
Confidence 9999987 5678899999999886
No 5
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.7e-76 Score=610.66 Aligned_cols=452 Identities=26% Similarity=0.381 Sum_probs=387.0
Q ss_pred CCCCCCCCceEEEeCCCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHHHHHHHHHcCCEEccCCCCC
Q 041055 59 PHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSIN 138 (526)
Q Consensus 59 ~~~~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~ 138 (526)
++..|++..+++.+. .++++||+||.++++++|++|.+ +|+++||+|+++++|++++++++|||+++|++++|++|.+
T Consensus 10 a~~~p~~~a~~~~~~-~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~ 87 (503)
T 4fuq_A 10 FDKLDDPHKLAIETA-AGDKISYAELVARAGRVANVLVA-RGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAY 87 (503)
T ss_dssp HSCCSCTTSEEEEET-TCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred HHhCCCCceEEEecC-CCcEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecCCCC
Confidence 445554445555443 47899999999999999999998 8999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCeEEEEcchhHHHhh----cCCCCEEEEcCCCCCCCcchHHHHhhhcCCCCCCCCCCCCCCCEEEEE
Q 041055 139 TESEIVKQVRDSGAKLIISASEELQKLT----KVNVPIIVTSRDQSNNKSVSVEELIECCDAADELPGCQLTQDDTAAIL 214 (526)
Q Consensus 139 ~~~~l~~~l~~~~~~~ii~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~ 214 (526)
+.+++.+++++++++++|++.+....+. .....++.+... ....+.+..... . ...+.....++++++|+
T Consensus 88 ~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~-~~~~~~~~~~~d~a~i~ 161 (503)
T 4fuq_A 88 TLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPD----GRGSLTDAAAGA-S-EAFATIDRGADDLAAIL 161 (503)
T ss_dssp CHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTT----SCSHHHHHHHTS-C-SCCCCCCCCTTSEEEEE
T ss_pred CHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCC----cccccchhhhcC-C-CCcCcCCCCCCCeEEEE
Confidence 9999999999999999999986544332 112223333221 111222221111 1 12222255789999999
Q ss_pred cCCCCCCCchHHHhhhHHHHHHHHHHhhhhcccCCCCcEEEEeCChhHHHHHHHHHHhhcccCcEEEEecCCCHHHHHHH
Q 041055 215 YSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEA 294 (526)
Q Consensus 215 ~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 294 (526)
|||||||.||||+++|+++.+.+......++ +.++|+++..+|++|.+|+....+.+++.|+++++.+.++++.+++.
T Consensus 162 ~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~ 239 (503)
T 4fuq_A 162 YTSGTTGRSKGAMLSHDNLASNSLTLVDYWR--FTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDL 239 (503)
T ss_dssp ECC--CCSCCEEEEEHHHHHHHHHHHHHHTT--CCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHH
T ss_pred ECCCcccCCeEEEEeHHHHHHHHHHHHHHhC--CCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHH
Confidence 9999999999999999999998888777766 77899999999999999975667778889999999999999999999
Q ss_pred HHhcCccEeecccHHHHHHHhh-ccCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCceeeccccccccceeecccCcc
Q 041055 295 IKTYQVNNIPLVPPVILGLVKY-CKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESCGATTFMVSPK 373 (526)
Q Consensus 295 i~~~~~t~~~~~P~~~~~l~~~-~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~ 373 (526)
++ ++|+++++|+++..+++. ......++++|.+++||+++++++.+.|.+.+ ++++++.||+||++..+....
T Consensus 240 i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~--- 313 (503)
T 4fuq_A 240 MA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSNPY--- 313 (503)
T ss_dssp HT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBCCCS---
T ss_pred Hh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCcccccCC---
Confidence 98 899999999999999987 34556788999999999999999999999998 689999999999986644322
Q ss_pred cccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceEEEeccccccccCCCHHHHhcccCCCCeeeccceEEEcCCCcEE
Q 041055 374 QARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLY 453 (526)
Q Consensus 374 ~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~~TGD~~~~~~~G~l~ 453 (526)
.....++++|+|+++++++|+|+++++++++|+.|||+|+||++++|||++|+.|.++|..+|||+|||+|++++||+++
T Consensus 314 ~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~ 393 (503)
T 4fuq_A 314 DGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVH 393 (503)
T ss_dssp SSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEE
T ss_pred CCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEE
Confidence 11223789999999999999998899999999999999999999999999999999999989999999999999999999
Q ss_pred EEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhcC
Q 041055 454 IVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQL 526 (526)
Q Consensus 454 ~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~l~~~l~~~l 526 (526)
++||.||+||++|++|+|.|||++|.+||+|.+++|++++++..++.++|+|++.++...++++++++++++|
T Consensus 394 ~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L 466 (503)
T 4fuq_A 394 ILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQL 466 (503)
T ss_dssp ECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTTB
T ss_pred EEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999998899999999999875
No 6
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.4e-75 Score=612.81 Aligned_cols=472 Identities=21% Similarity=0.314 Sum_probs=396.8
Q ss_pred CCCCCCCChh-hhhcccCCCCCCCCCceEEEeC---CCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCch
Q 041055 42 IPTRTDLDTA-TCVLSRFPHPDLAESRVALIDS---ATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLY 117 (526)
Q Consensus 42 ~p~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~---~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~ 117 (526)
++....+|+. +++... ++..| +++|+++. +.++++||+||.++++++|++|++ +|+++||+|+++++|+++|
T Consensus 49 ~~~~~~~n~~~~~l~~~-a~~~p--d~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~-~Gv~~Gd~V~l~~~~~~e~ 124 (580)
T 3etc_A 49 ILVPENFNFAYDVVDVY-ARDSP--EKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVK-HGIGKGDYVMLTLKSRYDF 124 (580)
T ss_dssp BCCCSSCCHHHHTHHHH-HHHCT--TCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECTTCTHH
T ss_pred CCCcccchHHHHHHHHH-HhhCC--CCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHH
Confidence 3333347777 555544 66667 79999852 235789999999999999999998 9999999999999999999
Q ss_pred HHHHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhH--HHhhc-----CC--CCEEEEcCCCCCCCcchHH
Q 041055 118 PSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEEL--QKLTK-----VN--VPIIVTSRDQSNNKSVSVE 188 (526)
Q Consensus 118 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~-----~~--~~~i~~~~~~~~~~~~~~~ 188 (526)
++++|||+++|++++|+++.++.+++.+++++++++++|++.+.. ..+.. .. ...+.++.. ....+.++.
T Consensus 125 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 203 (580)
T 3etc_A 125 WYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGD-VLEGWIDFR 203 (580)
T ss_dssp HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSS-CCTTCEEHH
T ss_pred HHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCc-cccccccHH
Confidence 999999999999999999999999999999999999999987543 22211 12 234444332 234566666
Q ss_pred HHhhhcCCCCCCCC--CCCCCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhhcccCCCCcEEEEeCChhHHHHH
Q 041055 189 ELIECCDAADELPG--CQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGL 266 (526)
Q Consensus 189 ~~~~~~~~~~~~~~--~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~ 266 (526)
+...........+. ....++++++|+|||||||.||+|.++|.+++..+........ ..+++++++..|++|..+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 281 (580)
T 3etc_A 204 KELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQN--VEDDGLHYTVADSGWGKCV 281 (580)
T ss_dssp HHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSC--CCTTCEEEECCCTTSTHHH
T ss_pred HHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhC--CCCCceEEEeCChHHHHHH
Confidence 65544333222221 2457899999999999999999999999998877666554444 6789999999999998887
Q ss_pred HHHHHhhcccCcEEEEe--cCCCHHHHHHHHHhcCccEeecccHHHHHHHhhccCCCCCCCceEEEEecCCCCHHHHHHH
Q 041055 267 AFFATGLFCCGVTIVVM--QRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEF 344 (526)
Q Consensus 267 ~~~~~~~l~~G~~~v~~--~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~ 344 (526)
...++.++..|+++++. ..+++..+++.|+++++|+++++|++++.|++......++++||.+++||+++++++.++|
T Consensus 282 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~ 361 (580)
T 3etc_A 282 WGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNPEVFNRF 361 (580)
T ss_dssp HHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECSSCCCHHHHHHH
T ss_pred HHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCCccceEEEEccCCCCHHHHHHH
Confidence 56678889999999988 5789999999999999999999999999999876567788999999999999999999999
Q ss_pred HHhCCCCceeeccccccccceeecccCcccccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceEEEec-----ccccc
Q 041055 345 RAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKS-----PTIMR 419 (526)
Q Consensus 345 ~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel~v~~-----~~~~~ 419 (526)
.+.+ ++++++.||+||++..++..... ...++++|+|+|+++++|+| ++++++++|+.|||+|+| +++++
T Consensus 362 ~~~~-g~~i~~~YG~TE~~~~~~~~~~~---~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~~ 436 (580)
T 3etc_A 362 LEFT-GIKLMEGFGQTETVVTIATFPWM---EPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFV 436 (580)
T ss_dssp HHHH-SCCCEEEECCTTSSCCEECCTTS---CCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCCC
T ss_pred HHHh-CCeEecccccccccceeecCCCC---CCCCCccccCCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeeec
Confidence 9988 78999999999998766543322 22378999999999999999 568899999999999997 78999
Q ss_pred ccCCCHHHHhcccCCCCeeeccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCc
Q 041055 420 GYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQ 499 (526)
Q Consensus 420 gy~~~~~~t~~~~~~~~~~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~ 499 (526)
||+++|+.|.+.| .+|||+|||+|++|+||+++|+||.||+||++|++|+|.|||++|.+||.|.+|+|++++++..|+
T Consensus 437 gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~ 515 (580)
T 3etc_A 437 HYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQ 515 (580)
T ss_dssp EETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEE
T ss_pred cccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCc
Confidence 9999999999999 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCCCCCCCH---HHHHHHHHhcC
Q 041055 500 IPMAYVVRAAGSQLTE---DQVMQFVTSQL 526 (526)
Q Consensus 500 ~~~a~vv~~~~~~~~~---~~l~~~l~~~l 526 (526)
.++|+|++.++...++ ++|+++|+++|
T Consensus 516 ~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l 545 (580)
T 3etc_A 516 VIKATIVLTKDYTPSDSLKNELQDHVKNVT 545 (580)
T ss_dssp EEEEEEEECTTCCCCHHHHHHHHHHHHHHS
T ss_pred EEEEEEEECCCCCCCHHHHHHHHHHHHhhC
Confidence 9999999998866553 68999998865
No 7
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=3.8e-76 Score=610.10 Aligned_cols=460 Identities=30% Similarity=0.445 Sum_probs=392.7
Q ss_pred CCCCChhhhhcccCCCCCCCCCceEEEeCCCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHHHHHHH
Q 041055 45 RTDLDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAI 124 (526)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~~~lA~ 124 (526)
+...|+.+++..+ ++.+| +++|+++.+.++++||+||.++++++|++|.+ +|+++||+|+++++|++++++++|||
T Consensus 13 ~~~~~l~~~l~~~-a~~~p--~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~ 88 (517)
T 3r44_A 13 DKMKNIGWMLRQR-ATVSP--RLQAYVEPSTDVRMTYAQMNALANRCADVLTA-LGIAKGDRVALLMPNSVEFCCLFYGA 88 (517)
T ss_dssp GGGGCHHHHHHHH-HHHST--TSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred ccccCHHHHHHHH-HHhCC--CCeEEEeCCcCceeeHHHHHHHHHHHHHHHHH-cCCCCcCEEEEEcCCCHHHHHHHHHH
Confidence 3447899988888 67777 79999986555599999999999999999998 99999999999999999999999999
Q ss_pred HHcCCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhHHHhhcC----C-C-CEEEEcCCCCCCCcchHHHHhhhcCCCC
Q 041055 125 FSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKV----N-V-PIIVTSRDQSNNKSVSVEELIECCDAAD 198 (526)
Q Consensus 125 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~-~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (526)
+++|++++|++|.++.+++.+++++++++++|++......+... . . .++.... ...+.+.......
T Consensus 89 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-- 160 (517)
T 3r44_A 89 AKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG------ADSLAERLRSAAA-- 160 (517)
T ss_dssp HHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEE------HHHHHHHHHHCCC--
T ss_pred HHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccC------cccHHHHhhccCc--
Confidence 99999999999999999999999999999999998766554321 1 0 0111110 1122332222211
Q ss_pred CCCCCCCCCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhhcccCCCCcEEEEeCChhHHHHHHHHHHhhcccCc
Q 041055 199 ELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGV 278 (526)
Q Consensus 199 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~ 278 (526)
..+.....++++++|+|||||||.||||+++|+++.+.+......++ ..++|+++..+|++|.+++...++..+ .|+
T Consensus 161 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~ 237 (517)
T 3r44_A 161 DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID--VRYRDRLLLPLPMFHVAALTTVIFSAM-RGV 237 (517)
T ss_dssp CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSC--CCTTCEEEECSCTTSHHHHHHHHHHHH-HTC
T ss_pred CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcC--CCCCCEEEEeCchHHHHHHHHHHHHHh-cCe
Confidence 22223567899999999999999999999999999998888777766 778999999999999999954455555 999
Q ss_pred EEEEecCCCHHHHHHHHHhcCccEeecccHHHHHHHhh-ccCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCceeecc
Q 041055 279 TIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKY-CKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGY 357 (526)
Q Consensus 279 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~l~~~y 357 (526)
++++.+.+++..+++.++++++|++.++|+++..|.+. .....+++++|.+++||+++++++.+.+.+. ++++++.|
T Consensus 238 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~Y 315 (517)
T 3r44_A 238 TLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGY 315 (517)
T ss_dssp EEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEE
T ss_pred EEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEee
Confidence 99999999999999999999999999999999999887 3345678999999999999999999999987 78999999
Q ss_pred ccccccceeecccCcccccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceEEEeccccccccCCCHHHHhcccCCCCe
Q 041055 358 GLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGW 437 (526)
Q Consensus 358 G~tE~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~ 437 (526)
|+||+++.++........ ...+++|+|.++++++|+| +++.+++.| .|||+|+||+++.|||++|+.|.+.| .+||
T Consensus 316 G~TE~~~~~~~~~~~~~~-~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~ 391 (517)
T 3r44_A 316 ALTESCGGGTLLLSEDAL-RKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGW 391 (517)
T ss_dssp ECGGGTTCEEEECGGGTT-TTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTE
T ss_pred cccccccceeecCCcccc-ccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCC
Confidence 999998876654433322 2378999999999999999 568888888 89999999999999999999999999 6899
Q ss_pred eeccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCCCCCCCHHH
Q 041055 438 LKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQ 517 (526)
Q Consensus 438 ~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~ 517 (526)
|+|||+|++++||+++++||.||+||++|++|+|.|||++|.+||+|.+|+|++.+++..|+.++++| ..++...++++
T Consensus 392 ~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~~~~ 470 (517)
T 3r44_A 392 FRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSEQQ 470 (517)
T ss_dssp EEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCCHHH
T ss_pred EecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999998899999888 66677788999
Q ss_pred HHHHHHhcC
Q 041055 518 VMQFVTSQL 526 (526)
Q Consensus 518 l~~~l~~~l 526 (526)
|+++|+++|
T Consensus 471 l~~~l~~~L 479 (517)
T 3r44_A 471 IVEYCGTRL 479 (517)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 999999875
No 8
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.3e-75 Score=609.19 Aligned_cols=458 Identities=24% Similarity=0.346 Sum_probs=389.9
Q ss_pred CChhhhhcccCCCCCCCCCceEEEeCCCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHHHHHHHHHc
Q 041055 48 LDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSL 127 (526)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~ 127 (526)
.++.+++... ++.+| +++|+++. ++++||+||.++++++|++|.+ +|+++||+|+++++|++++++++|||+++
T Consensus 25 ~tl~~~l~~~-a~~~p--~~~A~~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 98 (539)
T 1mdb_A 25 ETFGDLLRDR-AAKYG--DRIAITCG--NTHWSYRELDTRADRLAAGFQK-LGIQQKDRVVVQLPNIKEFFEVIFALFRL 98 (539)
T ss_dssp CCHHHHHHHH-HHHHT--TSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHCC--CCEEEEeC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHHc
Confidence 5788888777 66666 79999984 6899999999999999999998 99999999999999999999999999999
Q ss_pred CCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchh--------HHHhhc--CCCCEEEEcCCCCCCCcchHHHHhhhcCCC
Q 041055 128 GAILSPANSINTESEIVKQVRDSGAKLIISASEE--------LQKLTK--VNVPIIVTSRDQSNNKSVSVEELIECCDAA 197 (526)
Q Consensus 128 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~--------~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 197 (526)
|++++|++|.++.+++.+++++++++++|++++. ...+.. ...+.+++.... ..+..+ .....
T Consensus 99 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~-- 171 (539)
T 1mdb_A 99 GALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA--EEFLPL---EDLHT-- 171 (539)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC--TTSEEG---GGCCC--
T ss_pred CeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc--cchhhh---hhccc--
Confidence 9999999999999999999999999999998752 112211 123323332211 111111 11111
Q ss_pred CCCCCCCCCCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhhcccCCCCcEEEEeCChhHHHHHHH-HHHhhccc
Q 041055 198 DELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAF-FATGLFCC 276 (526)
Q Consensus 198 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~~l~~ 276 (526)
...+.....++++++++|||||||.||||+++|+++.+.+......++ +.+++++++.+|++|.+++.. .++.++..
T Consensus 172 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~--~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~ 249 (539)
T 1mdb_A 172 EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCW--LDHSTVYLAALPMAHNYPLSSPGVLGVLYA 249 (539)
T ss_dssp CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHT--CCTTCEEEECSCTTSHHHHHSSHHHHHHHT
T ss_pred cccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhC--CCCCCEEEEeecccccchhhHHHHHHHHHh
Confidence 111122456789999999999999999999999999988877766666 678999999999999999854 68889999
Q ss_pred CcEEEEecCCCHHHHHHHHHhcCccEeecccHHHHHHHhh-ccCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCceee
Q 041055 277 GVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKY-CKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQ 355 (526)
Q Consensus 277 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~l~~ 355 (526)
|+++++.+.+++..+++.++++++|++.++|+++..|++. .....+++++|.+++||+++++++.+++.+.+ ++++++
T Consensus 250 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~ 328 (539)
T 1mdb_A 250 GGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQ 328 (539)
T ss_dssp TCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEE
T ss_pred CCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEE
Confidence 9999999999999999999999999999999999999987 44567889999999999999999999999998 789999
Q ss_pred ccccccccceeecccCcccccCCCCcccccCCC-cEEEEEeCCCCccCCCCCcceEEEeccccccccCCCHHHHhcccCC
Q 041055 356 GYGLTESCGATTFMVSPKQARARSGSCGALSPT-FYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDE 434 (526)
Q Consensus 356 ~yG~tE~~~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~ 434 (526)
.||+||++..++....... ...+++|+|+++ .+++|+| ++++++++|+.|||+|+||++++|||++|+.|.++|..
T Consensus 329 ~YG~TE~~~~~~~~~~~~~--~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~ 405 (539)
T 1mdb_A 329 VFGMAEGLVNYTRLDDPEE--IIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTE 405 (539)
T ss_dssp EEECTTSCEEECCTTSCHH--HHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCT
T ss_pred EEcCCCCcccccCCCCcHH--hcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccC
Confidence 9999997543332111111 125789999975 4899999 67889999999999999999999999999999999988
Q ss_pred CCeeeccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCCCCCCC
Q 041055 435 DGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLT 514 (526)
Q Consensus 435 ~~~~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~~~~ 514 (526)
+|||+|||+|++|+||++++.||.||+||++|++|+|.|||++|.+||.|.+|+|++.+++..|+.++|+|+++ +...+
T Consensus 406 ~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~-~~~~~ 484 (539)
T 1mdb_A 406 DGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPR-DEAPK 484 (539)
T ss_dssp TSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES-SSCCC
T ss_pred CCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEEC-CCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999987 34677
Q ss_pred HHHHHHHHHhc
Q 041055 515 EDQVMQFVTSQ 525 (526)
Q Consensus 515 ~~~l~~~l~~~ 525 (526)
.++++++|+++
T Consensus 485 ~~~l~~~l~~~ 495 (539)
T 1mdb_A 485 AAELKAFLRER 495 (539)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 89999999986
No 9
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=7.1e-75 Score=599.35 Aligned_cols=454 Identities=24% Similarity=0.334 Sum_probs=386.2
Q ss_pred ChhhhhcccCCCCCCCCCceEEEeCCCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHHHHHHHHHcC
Q 041055 49 DTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLG 128 (526)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G 128 (526)
|+.+++.+. ++..| +++|+++...++++||+||.+++.++|++|.+ +|+++||+|+++++|++++++++|||+++|
T Consensus 3 tl~~~l~~~-a~~~p--~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 78 (504)
T 1t5h_X 3 TVNEMLRRA-ATRAP--DHCALAVPARGLRLTHAELRARVEAVAARLHA-DGLRPQQRVAVVAPNSADVVIAILALHRLG 78 (504)
T ss_dssp CHHHHHHHH-HHHCT--TSEEEEETTTTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHH-HHhCC--CceEEEEcCCCceeEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHHhC
Confidence 577777766 66667 79999986557899999999999999999998 999999999999999999999999999999
Q ss_pred CEEccCCCCCCHHHHHHHHHhcCCeEEEE--cchhHHHh-hcC-CCCEEEEcCCCCCCCcchHHHHhhhcC---CCCCCC
Q 041055 129 AILSPANSINTESEIVKQVRDSGAKLIIS--ASEELQKL-TKV-NVPIIVTSRDQSNNKSVSVEELIECCD---AADELP 201 (526)
Q Consensus 129 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~-~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 201 (526)
++++|++|.++.+++.+++++++++++++ +.+....+ ... ..+++. +.++..... .....+
T Consensus 79 ~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 146 (504)
T 1t5h_X 79 AVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIF------------LGDLVRDGEPYSYGPPIE 146 (504)
T ss_dssp CEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCEEEE------------GGGTEETTEECCCSCCCC
T ss_pred cEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccccceeEE------------ecchhhcCcccccCCccC
Confidence 99999999999999999999999999999 66655444 221 222221 111111100 001111
Q ss_pred CCCCCCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhhcccCCCCcEEEEeCChhHHHHHHHHHHhhcccCcEEE
Q 041055 202 GCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIV 281 (526)
Q Consensus 202 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v 281 (526)
.....++++++|+|||||||.||||+++|+++.+.+......+++...+++++++.+|++|.+|+...++.++..|++++
T Consensus 147 ~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v 226 (504)
T 1t5h_X 147 DPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYV 226 (504)
T ss_dssp CCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEE
T ss_pred CCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEE
Confidence 12456789999999999999999999999999988877766665323788999999999999998667788999999999
Q ss_pred EecCCCHHHHHHHHHhcCccEeecccHHHHHHHhhc---cCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCceeeccc
Q 041055 282 VMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYC---KDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYG 358 (526)
Q Consensus 282 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~l~~~yG 358 (526)
+.+.+++..+++.|+++++|+++++|+++..|++.. ....+++++|.+++||+++++++.++|++.+ ++.+++.||
T Consensus 227 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG 305 (504)
T 1t5h_X 227 VVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYG 305 (504)
T ss_dssp ECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEEEE
T ss_pred eCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeeeec
Confidence 999999999999999999999999999999998874 2456789999999999999999999999999 588999999
Q ss_pred cccccceeecccCcccccCCCCcccccCCCcEEEEEeCCCC--ccCCCCCcceEEEe-ccccccccCCCHHHHhcccCCC
Q 041055 359 LTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETR--LALPPYQRGELWLK-SPTIMRGYFGNEEATAAAFDED 435 (526)
Q Consensus 359 ~tE~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~--~~~~~g~~Gel~v~-~~~~~~gy~~~~~~t~~~~~~~ 435 (526)
+||++. +.... ....+++|.|.++++++++|.+++ +++++|+.|||+|+ |++++.||+++|+.|.+.| .+
T Consensus 306 ~TE~~~-~~~~~-----~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~ 378 (504)
T 1t5h_X 306 TTEAMN-SLYMR-----QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QD 378 (504)
T ss_dssp ETTTEE-EEEEE-----SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ET
T ss_pred cccccc-ccccc-----CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cC
Confidence 999933 22211 122689999999999999995432 89999999999999 8999999999999999999 68
Q ss_pred CeeeccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCCCCCCCH
Q 041055 436 GWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTE 515 (526)
Q Consensus 436 ~~~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~~~~~ 515 (526)
|||+|||+|++|+||++++.||.||+||++|++|+|.|||++|.+||+|.+|+|++.+++..|+.++|+|+++++...+.
T Consensus 379 g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~ 458 (504)
T 1t5h_X 379 GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458 (504)
T ss_dssp TEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCH
T ss_pred CccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888889
Q ss_pred HHHHHHHHh-cC
Q 041055 516 DQVMQFVTS-QL 526 (526)
Q Consensus 516 ~~l~~~l~~-~l 526 (526)
+++++++++ +|
T Consensus 459 ~~l~~~~~~~~L 470 (504)
T 1t5h_X 459 DALDTFCRSSEL 470 (504)
T ss_dssp HHHHHHHHTSSC
T ss_pred HHHHHHHhhccC
Confidence 999999997 65
No 10
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=9.6e-75 Score=614.65 Aligned_cols=476 Identities=24% Similarity=0.356 Sum_probs=391.6
Q ss_pred CCCCCCCChhhhhcccCCCCCCCCCceEEEeC----CCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCch
Q 041055 42 IPTRTDLDTATCVLSRFPHPDLAESRVALIDS----ATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLY 117 (526)
Q Consensus 42 ~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~----~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~ 117 (526)
+++...+|....++++.++.++ +++|+++. +.++++||+||.+++.++|++|++ +|+++||+|+++++|++++
T Consensus 69 wf~~~~~n~~~~~l~~~a~~~p--d~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~-~Gv~~Gd~V~i~~~~~~e~ 145 (652)
T 1pg4_A 69 WYEDGTLNLAANCLDRHLQENG--DRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPEA 145 (652)
T ss_dssp ESTTCEECHHHHHTGGGHHHHT--TSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEEECCSSHHH
T ss_pred ECCCCChhHHHHHHHHHhccCC--CceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHH
Confidence 3333345544444433245556 79999962 235789999999999999999998 9999999999999999999
Q ss_pred HHHHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhH------------HHh-hcC---CCC-EEEEcCCCC
Q 041055 118 PSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEEL------------QKL-TKV---NVP-IIVTSRDQS 180 (526)
Q Consensus 118 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~------------~~~-~~~---~~~-~i~~~~~~~ 180 (526)
++++|||+++|++++|+++.++.+++.+++++++++++|+++... ... ... ..+ +++++....
T Consensus 146 vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~ 225 (652)
T 1pg4_A 146 AVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS 225 (652)
T ss_dssp HHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCC
T ss_pred HHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCC
Confidence 999999999999999999999999999999999999999986532 111 111 223 444432211
Q ss_pred C-----CCcchHHHHhhhcCCCCCCCCCCCCCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHH-HHhhhhcccCCCCcEE
Q 041055 181 N-----NKSVSVEELIECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQ-LLRWTVDVTHAQNDIF 254 (526)
Q Consensus 181 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~-~~~~~~~~~~~~~~~~ 254 (526)
. .....+.++...... ..+.....++++++|+|||||||.||||+++|++++.... .....++ +.++|++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~--~~~~d~~ 301 (652)
T 1pg4_A 226 DIDWQEGRDLWWRDLIEKASP--EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFD--YHPGDIY 301 (652)
T ss_dssp CCCCCBTTEEEHHHHHTTSCS--CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTT--CCTTCEE
T ss_pred cccccCCCceeHHHHHhhcCC--CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcC--CCCCCEE
Confidence 1 112334454432211 1222245679999999999999999999999999876653 3344444 6789999
Q ss_pred EEeCChhHHHHHHHHHHhhcccCcEEEEecC----CCHHHHHHHHHhcCccEeecccHHHHHHHhhc---cCCCCCCCce
Q 041055 255 LCMIPMFHIYGLAFFATGLFCCGVTIVVMQR----FDLQAMIEAIKTYQVNNIPLVPPVILGLVKYC---KDSSYLTSLR 327 (526)
Q Consensus 255 l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~~~~~l~~lr 327 (526)
++..|++|++|+.+.++.++..|+++++.+. +++..+++.|+++++|+++++|++++.|++.. ....++++||
T Consensus 302 l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr 381 (652)
T 1pg4_A 302 WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLR 381 (652)
T ss_dssp EECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCC
T ss_pred EEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceE
Confidence 9999999999987778899999999999864 58999999999999999999999999999873 3456789999
Q ss_pred EEEEecCCCCHHHHHHHHHhCC--CCceeeccccccccceeecccCcccccCCCCcccccCCCcEEEEEeCCCCccCCCC
Q 041055 328 RVGSGAAPLSKELADEFRAKFP--WVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPY 405 (526)
Q Consensus 328 ~v~~gG~~l~~~~~~~~~~~~~--~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g 405 (526)
.+++||+++++++.+++.+.++ ++++++.||+||+++.++....... ....+++|+|++|++++|+| +++++++.|
T Consensus 382 ~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~-~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g 459 (652)
T 1pg4_A 382 ILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAI-ELKAGSATRPFFGVQPALVD-NEGHPQEGA 459 (652)
T ss_dssp EEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTC-CBCTTCCBSBCTTCCEEEEC-TTCCBCCSS
T ss_pred EEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCc-CccCCccccCcCCCeEEEEC-CCCCCcCCC
Confidence 9999999999999999999984 2899999999999876655432221 22378999999999999999 568899999
Q ss_pred CcceEEEec--cccccccCCCHHHHhcccC--CCCeeeccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhcC
Q 041055 406 QRGELWLKS--PTIMRGYFGNEEATAAAFD--EDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSH 481 (526)
Q Consensus 406 ~~Gel~v~~--~~~~~gy~~~~~~t~~~~~--~~~~~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~ 481 (526)
+.|||+|+| |++++|||++++.+.+.|. .+|||+|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+|
T Consensus 460 ~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~ 539 (652)
T 1pg4_A 460 TEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAH 539 (652)
T ss_dssp EEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHS
T ss_pred ceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhC
Confidence 999999999 7999999999999988762 478999999999999999999999999999999999999999999999
Q ss_pred CCcccEEEEeeeCCCCCceEEEEEEeCCCCCCC---HHHHHHHHHhcC
Q 041055 482 PNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLT---EDQVMQFVTSQL 526 (526)
Q Consensus 482 ~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~~~~---~~~l~~~l~~~l 526 (526)
|.|.+|+|++++++..|+.++|||+++++...+ .++|+++|+++|
T Consensus 540 p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l 587 (652)
T 1pg4_A 540 PKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEI 587 (652)
T ss_dssp TTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhC
Confidence 999999999999998999999999999886655 478999998875
No 11
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=2.1e-75 Score=648.27 Aligned_cols=491 Identities=37% Similarity=0.603 Sum_probs=355.0
Q ss_pred CceeecCCCCCCCCCCCCCCCCChhhhhcccCCCCCCCCCceEEEeCCCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCE
Q 041055 27 TGIYHSLIQLGENYRIPTRTDLDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDV 106 (526)
Q Consensus 27 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~ 106 (526)
..+|.+.. ++...|. ..++++++.++ ++.+| +++|+++..+++++||+||.++++++|++|.+ +|+++||+
T Consensus 45 ~~~~~~~~---~~~~~p~--~~tl~~~l~~~-a~~~p--d~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~-~Gv~~gd~ 115 (979)
T 3tsy_A 45 DVIFRSKL---PDIYIPN--HLSLHDYIFQN-ISEFA--TKPCLINGPTGHVYTYSDVHVISRQIAANFHK-LGVNQNDV 115 (979)
T ss_dssp CCCBCCSS---CCCCCCT--TSCHHHHHTTT-GGGTT--TSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCE
T ss_pred CceeecCC---CCCCCCC--CCCHHHHHHHH-HHhCC--CCeEEEECCCCcEEEHHHHHHHHHHHHHHHHH-cCCCCcCE
Confidence 33455544 3334443 37899999888 67777 79999997668899999999999999999998 99999999
Q ss_pred EEEECCCCCchHHHHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhHHHhh----cCCCCEEEEcCCCC--
Q 041055 107 VFVLAPNSLLYPSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLT----KVNVPIIVTSRDQS-- 180 (526)
Q Consensus 107 V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~----~~~~~~i~~~~~~~-- 180 (526)
|+|+++|+++|++++|||+++|++++|++|.++.+++.+++++++++++|++.+....+. .....++.++....
T Consensus 116 V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (979)
T 3tsy_A 116 VMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVP 195 (979)
T ss_dssp EEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSC
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCccccc
Confidence 999999999999999999999999999999999999999999999999999987654433 22344444443211
Q ss_pred -CCCcchHHHHhhhcCC-CCCCCCCCCCCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhh--cccCCCCcEEEE
Q 041055 181 -NNKSVSVEELIECCDA-ADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTV--DVTHAQNDIFLC 256 (526)
Q Consensus 181 -~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~--~~~~~~~~~~l~ 256 (526)
......+.++...... ....+.....++++++|+|||||||.||||+++|+++.+.+....... .+...+++++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~ 275 (979)
T 3tsy_A 196 IPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILC 275 (979)
T ss_dssp CCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEE
T ss_pred CCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEE
Confidence 1222333333221111 011222256789999999999999999999999999998776654322 223678999999
Q ss_pred eCChhHHHHHHHHHHhhcccCcEEEEecCCCHHHHHHHHHhcCccEeecccHHHHHHHhh-ccCCCCCCCceEEEEecCC
Q 041055 257 MIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKY-CKDSSYLTSLRRVGSGAAP 335 (526)
Q Consensus 257 ~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~l~~lr~v~~gG~~ 335 (526)
.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++. .....+++++|.+++||++
T Consensus 276 ~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~ 355 (979)
T 3tsy_A 276 VLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAP 355 (979)
T ss_dssp CSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCC
T ss_pred ECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCC
Confidence 999999999977788899999999999999999999999999999999999999999987 4456789999999999999
Q ss_pred CCHHHHHHHHHhCCCCceeeccccccccceeecccC--cccccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceEEEe
Q 041055 336 LSKELADEFRAKFPWVELRQGYGLTESCGATTFMVS--PKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLK 413 (526)
Q Consensus 336 l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~--~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel~v~ 413 (526)
+++++.+++.+.||++++++.||+||++.+++.... ........+++|+|+++++++|+|+++++++++|+.|||+|+
T Consensus 356 l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~ 435 (979)
T 3tsy_A 356 LGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIR 435 (979)
T ss_dssp CCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEE
T ss_pred CCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEE
Confidence 999999999999999999999999999877655321 122223378999999999999999988999999999999999
Q ss_pred ccccccccCCCHHHHhcccCCCCeeeccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeee
Q 041055 414 SPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLE 493 (526)
Q Consensus 414 ~~~~~~gy~~~~~~t~~~~~~~~~~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~ 493 (526)
||++++|||++|+.|.+.|+.+|||+|||+|++++||+++|+||.||+||++|++|+|.|||++|.+||.|.+++|++++
T Consensus 436 g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~ 515 (979)
T 3tsy_A 436 GHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMK 515 (979)
T ss_dssp STTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC---------------------------------
T ss_pred CCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEeCCCCCCCHHHHHHHHHhcC
Q 041055 494 DEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQL 526 (526)
Q Consensus 494 ~~~~~~~~~a~vv~~~~~~~~~~~l~~~l~~~l 526 (526)
++..++.++|+|++.++...++++|+++|+++|
T Consensus 516 ~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l 548 (979)
T 3tsy_A 516 EEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQV 548 (979)
T ss_dssp ---------------------------------
T ss_pred ccCCCcEEEEEEEECCCCCCCHHHHHHHHHHhc
Confidence 998999999999998888888899999998875
No 12
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=3.7e-75 Score=606.12 Aligned_cols=464 Identities=27% Similarity=0.406 Sum_probs=364.1
Q ss_pred CChhhhhcccCCCCCCCCCceEEEeC--CCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHHHHHHHH
Q 041055 48 LDTATCVLSRFPHPDLAESRVALIDS--ATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIF 125 (526)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~~~lA~~ 125 (526)
.++.+++... ++..| +++|+++. +.++++||+||.++++++|++|++ +|+++||+|+++++|++++++++|||+
T Consensus 18 ~~l~~~l~~~-a~~~p--~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 93 (541)
T 1v25_A 18 LNLWDFLERA-AALFG--RKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRA-LGVGVGDRVATLGFNHFRHLEAYFAVP 93 (541)
T ss_dssp CCTHHHHHHH-HHHST--TCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHhCC--CceEEEEecCCCCceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHH
Confidence 5788888777 66666 79999842 245789999999999999999998 999999999999999999999999999
Q ss_pred HcCCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhHHHhhcC-----CCC-EEEEcCCCCCCCcchHHHHhhhcCCCCC
Q 041055 126 SLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKV-----NVP-IIVTSRDQSNNKSVSVEELIECCDAADE 199 (526)
Q Consensus 126 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (526)
++|++++|++|.++.+++.+++++++++++|++++....+... ..+ +++++... ......+.+.......
T Consensus 94 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--- 169 (541)
T 1v25_A 94 GMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKA-PEGYLAYEEALGEEAD--- 169 (541)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCC-CTTCEEHHHHCCSCCC---
T ss_pred hcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCC-CcccccHHHHhhccCC---
Confidence 9999999999999999999999999999999998766544321 223 33333221 1123344443322111
Q ss_pred CCCCCCCCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhhcccCCCCcEEEEeCChhHHHHHHHHHHhhcccCcE
Q 041055 200 LPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVT 279 (526)
Q Consensus 200 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~ 279 (526)
.....++++++|+|||||||.||||+++|+++............+.+.++|++++.+|++|.+++ ..++.++..|++
T Consensus 170 --~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~-~~~~~~l~~G~~ 246 (541)
T 1v25_A 170 --PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAW-CLPYAATLVGAK 246 (541)
T ss_dssp --CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHH-THHHHHHHHTCE
T ss_pred --cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHH-HHHHHHHhcCce
Confidence 12456789999999999999999999999999876655322122236789999999999999998 556778899999
Q ss_pred EEEec-CCCHHHHHHHHHhcCccEeecccHHHHHHHhh-ccCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCceeecc
Q 041055 280 IVVMQ-RFDLQAMIEAIKTYQVNNIPLVPPVILGLVKY-CKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGY 357 (526)
Q Consensus 280 ~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~l~~~y 357 (526)
+++.+ .+++..+++.++++++|+++++|+++..|++. .....+++++|.+++||+++++++.++| +.+ ++++++.|
T Consensus 247 ~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~Y 324 (541)
T 1v25_A 247 QVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQGY 324 (541)
T ss_dssp EEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEEE
T ss_pred EEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCceeecc
Confidence 99986 47999999999999999999999999999887 3345678999999999999999999999 666 78999999
Q ss_pred ccccccceeecccCccc--------ccCCCCcccccCCCcEEEEEeCCCCccCCC--CCcceEEEeccccccccCCCHHH
Q 041055 358 GLTESCGATTFMVSPKQ--------ARARSGSCGALSPTFYAKVVDTETRLALPP--YQRGELWLKSPTIMRGYFGNEEA 427 (526)
Q Consensus 358 G~tE~~~~~~~~~~~~~--------~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~--g~~Gel~v~~~~~~~gy~~~~~~ 427 (526)
|+||++.+++....... .....+++|+|+|+++++|+| +++++++. ++.|||+|+||+++.|||++|+.
T Consensus 325 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~ 403 (541)
T 1v25_A 325 GLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEA 403 (541)
T ss_dssp ECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHH
T ss_pred cccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhh
Confidence 99999887665432210 001257899999999999999 56778874 36899999999999999999999
Q ss_pred HhcccCCCCeeeccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEe
Q 041055 428 TAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVR 507 (526)
Q Consensus 428 t~~~~~~~~~~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~ 507 (526)
|+++|..+|||+|||+|++|+||++++.||.||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++|+|++
T Consensus 404 t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~ 483 (541)
T 1v25_A 404 TRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVP 483 (541)
T ss_dssp HHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC--
T ss_pred hhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEE
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCHHHHHHHHHh-cC
Q 041055 508 AAGSQLTEDQVMQFVTS-QL 526 (526)
Q Consensus 508 ~~~~~~~~~~l~~~l~~-~l 526 (526)
. +...+.+++++++++ +|
T Consensus 484 ~-~~~~~~~~l~~~~~~~~L 502 (541)
T 1v25_A 484 R-GEKPTPEELNEHLLKAGF 502 (541)
T ss_dssp ------------------CC
T ss_pred C-CCCCCHHHHHHHHHhccC
Confidence 7 555667889999887 54
No 13
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=8.1e-76 Score=611.48 Aligned_cols=461 Identities=23% Similarity=0.324 Sum_probs=333.2
Q ss_pred CChhhhhcccCCCCCCCCCceEEEeCCCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHHHHHHHHHc
Q 041055 48 LDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSL 127 (526)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~ 127 (526)
.++.+++... ++.+| +++|+++. ++++||+||.++++++|++|.+ +|+++||+|+++++|++++++++|||+++
T Consensus 30 ~tl~~~l~~~-a~~~p--~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 103 (544)
T 3o83_A 30 QPLTRILTVG-VQSHP--HSLAIICG--ERQLSYIELDRLSTNLATRLAE-KGLGKGDTALVQLPNVAEFYIVFFALLKA 103 (544)
T ss_dssp CCTTHHHHHH-HHHCT--TSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHhCC--CceEEEcC--CCceeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 6788888877 67777 79999984 7899999999999999999998 99999999999999999999999999999
Q ss_pred CCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhH--------HHhhc--CCCCEEEEcCCCCCCCcchHHHHhhhcCCC
Q 041055 128 GAILSPANSINTESEIVKQVRDSGAKLIISASEEL--------QKLTK--VNVPIIVTSRDQSNNKSVSVEELIECCDAA 197 (526)
Q Consensus 128 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 197 (526)
|++++|+++.++.+++.+++++++++++|++.... ..+.. .....+...... .....+.+.......
T Consensus 104 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~- 180 (544)
T 3o83_A 104 GVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQ--ATDFGLLDWIETPAE- 180 (544)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCC--TTSEEHHHHHHSCCS-
T ss_pred CcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCC--ccccchhhhhhcccc-
Confidence 99999999999999999999999999999987542 22221 122333332221 111223333222111
Q ss_pred CCCCCCCCCCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhhcccCCCCcEEEEeCChhHHHHHHH-HHHhhccc
Q 041055 198 DELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAF-FATGLFCC 276 (526)
Q Consensus 198 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~~l~~ 276 (526)
...+.....++++++|+|||||||.||||+++|+++.+.+......++ +.++|++++.+|++|.+++.. .++.++..
T Consensus 181 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~ 258 (544)
T 3o83_A 181 TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICG--LNSNTRLLCALPAPHNFMLSSPGALGVLHA 258 (544)
T ss_dssp SCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTT--CCTTCEEEECSCTTSHHHHHSSHHHHHHHT
T ss_pred cccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhC--CCCCCeEEEecCcceEeecchHHHHHHHHc
Confidence 111212456899999999999999999999999999998888777766 778999999999999999854 57889999
Q ss_pred CcEEEEecCCCHHHHHHHHHhcCccEeecccHHHHHHHhh-ccCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCceee
Q 041055 277 GVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKY-CKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQ 355 (526)
Q Consensus 277 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~l~~ 355 (526)
|+++++.+.+++..+++.++++++|++.++|+++..|++. .....+++++|.+++||+++++++.+++.+.+ ++++++
T Consensus 259 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~ 337 (544)
T 3o83_A 259 GGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQ 337 (544)
T ss_dssp TCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEE
T ss_pred CCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEe
Confidence 9999999999999999999999999999999999999987 33456788999999999999999999999998 799999
Q ss_pred ccccccccceeecccCcccccCCCCcccccC-CCcEEEEEeCCCCccCCCCCcceEEEeccccccccCCCHHHHhcccCC
Q 041055 356 GYGLTESCGATTFMVSPKQARARSGSCGALS-PTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDE 434 (526)
Q Consensus 356 ~yG~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~ 434 (526)
.||+||++..++....... . ..+++|+|+ ++++++|+| ++++++++|+.|||+|+||+++.||+++|+.|.++|+.
T Consensus 338 ~YG~TE~~~~~~~~~~~~~-~-~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~ 414 (544)
T 3o83_A 338 VFGMAEGLVNYTRLDDSDE-Q-IFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDE 414 (544)
T ss_dssp EEECTTSCEEECCTTSCHH-H-HHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCT
T ss_pred eeccccccceeecCCCchh-h-ccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCC
Confidence 9999998755443222211 1 156899996 899999999 78899999999999999999999999999999999999
Q ss_pred CCeeeccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCCCCCCC
Q 041055 435 DGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLT 514 (526)
Q Consensus 435 ~~~~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~~~~ 514 (526)
+|||+|||+|++|+||+++++||.||+||++|++|+|.|||++|.+||+|.+++|++++++..|+.++|+|+.++ ...+
T Consensus 415 ~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~ 493 (544)
T 3o83_A 415 DNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-PELK 493 (544)
T ss_dssp TCCEEEEEEEEECTTSCEEEEEEEC-------------------------------------------------------
T ss_pred CCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-CCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876 4456
Q ss_pred HHHHHHHHHh
Q 041055 515 EDQVMQFVTS 524 (526)
Q Consensus 515 ~~~l~~~l~~ 524 (526)
++++++++++
T Consensus 494 ~~~l~~~~~~ 503 (544)
T 3o83_A 494 AVVLRRHLME 503 (544)
T ss_dssp ----------
T ss_pred HHHHHHHHHh
Confidence 6788888876
No 14
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=3.2e-74 Score=595.89 Aligned_cols=457 Identities=20% Similarity=0.264 Sum_probs=385.8
Q ss_pred CChhhhhcccCCCCCCCCCceEEEeCCCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHHHHHHHHHc
Q 041055 48 LDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSL 127 (526)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~ 127 (526)
+|+.+.+... ++.+| +++|+++. ++++||+||.++++++|++|.+ +|+++||+|+++++|+++|++++|||+++
T Consensus 1 m~l~~~l~~~-a~~~p--~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~e~~~~~la~~~~ 74 (512)
T 3fce_A 1 MKLLEQIEKW-AAETP--DQTAFVWR--DAKITYKQLKEDSDALAHWISS-EYPDDRSPIMVYGHMQPEMIINFLGCVKA 74 (512)
T ss_dssp CCHHHHHHHH-HHHST--TSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HSTTCCCCEEEEESSCHHHHHHHHHHHHT
T ss_pred CcHHHHHHHH-HHHCC--CceEEEeC--CceEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 4677777777 66677 79999984 6899999999999999999998 89999999999999999999999999999
Q ss_pred CCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhHHHhhcCCCCEEEEcCCCCCCCcchHHHHhhhcCCCCCCCCCCCCC
Q 041055 128 GAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEELIECCDAADELPGCQLTQ 207 (526)
Q Consensus 128 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (526)
|++++|+++.++.+++.++++++++++++++...... ..+...... ..+.+...........+.....+
T Consensus 75 G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~----~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 143 (512)
T 3fce_A 75 GHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT----DLPVRIVSE-------DNLKDIFFTHKGNTPNPEHAVKG 143 (512)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS----CCSSEEEET-------HHHHHHHHHTTTCCCCGGGSCCT
T ss_pred CCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc----ccccceech-------hhhhhhcccccccCCCccccCCC
Confidence 9999999999999999999999999999997542211 111111110 11222221111112222225578
Q ss_pred CCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhhcccCCCCcEEEEeCChhHHHHHHHHHHhhcccCcEEEEecC--
Q 041055 208 DDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQR-- 285 (526)
Q Consensus 208 ~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-- 285 (526)
+++++|+|||||||.||+|+++|+++.+.+......++ ..++|++++.+|++|.+++ ..++.++..|+++++.+.
T Consensus 144 ~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~--~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~ 220 (512)
T 3fce_A 144 DENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFN--LQTGQVFLNQAPFSFDLSV-MDIYPSLVTGGTLWAIDKDM 220 (512)
T ss_dssp TSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTT--CCSSCEEEECSCTTSGGGH-HHHHHHHHTTCEEEECCHHH
T ss_pred CCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcC--CCCCCEEEEeCCccHhHHH-HHHHHHHhCCCEEEECCHHH
Confidence 99999999999999999999999999998888777766 6789999999999999998 668889999999999876
Q ss_pred -CCHHHHHHHHHhcCccEeecccHHHHHHHhh-ccCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCceeecccccccc
Q 041055 286 -FDLQAMIEAIKTYQVNNIPLVPPVILGLVKY-CKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESC 363 (526)
Q Consensus 286 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~l~~~yG~tE~~ 363 (526)
+++..+++.++++++|++.++|+++..++.. ......++++|.+++||+++++++.+++.+.||++++++.||+||++
T Consensus 221 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~ 300 (512)
T 3fce_A 221 IARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEAT 300 (512)
T ss_dssp HHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGS
T ss_pred hhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhh
Confidence 6899999999999999999999999999877 44567789999999999999999999999999999999999999998
Q ss_pred ceeecccCccc--ccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceEEEeccccccccCCCHHHHhccc---CCCCee
Q 041055 364 GATTFMVSPKQ--ARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAF---DEDGWL 438 (526)
Q Consensus 364 ~~~~~~~~~~~--~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~---~~~~~~ 438 (526)
..++....... ......++|+|.++++++|+| ++++++++|+.|||+|+||+++.|||++|+.|++.| ++++||
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~ 379 (512)
T 3fce_A 301 VAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAY 379 (512)
T ss_dssp SCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEE
T ss_pred hheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEE
Confidence 77664332221 112367899999999999999 678999999999999999999999999999999998 457899
Q ss_pred eccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCCCCCCCH---
Q 041055 439 KTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTE--- 515 (526)
Q Consensus 439 ~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~~~~~--- 515 (526)
+|||+|++ +||++++.||.||+||++|++|+|.|||++|.+||.|.+|+|+++++...++.++|+|++.++.....
T Consensus 380 ~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~ 458 (512)
T 3fce_A 380 KTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKL 458 (512)
T ss_dssp EEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHH
T ss_pred eCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhh
Confidence 99999999 79999999999999999999999999999999999999999999999888999999999987755443
Q ss_pred -HHHHHHHHhcC
Q 041055 516 -DQVMQFVTSQL 526 (526)
Q Consensus 516 -~~l~~~l~~~l 526 (526)
++++++|+++|
T Consensus 459 ~~~l~~~l~~~L 470 (512)
T 3fce_A 459 TSAIKKELNERL 470 (512)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHhhC
Confidence 56888888775
No 15
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=7.7e-74 Score=607.87 Aligned_cols=479 Identities=23% Similarity=0.311 Sum_probs=389.2
Q ss_pred CCCCCCCCChhhhhcccCCCCCCCCCceEEEeC----CCCceeCHHHHHHHHHHHHHHHH-HhcCCCCCCEEEEECCCCC
Q 041055 41 RIPTRTDLDTATCVLSRFPHPDLAESRVALIDS----ATHERVTYAQLHRSIRSLASGLY-HALGVRKGDVVFVLAPNSL 115 (526)
Q Consensus 41 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~----~~~~~~Ty~el~~~~~~lA~~L~-~~~gl~~gd~V~i~~~n~~ 115 (526)
.+.+...+|....++++.++..+ +++|+++. +.++++||+||.+++.++|++|+ + +|+++||+|+++++|++
T Consensus 74 ~wf~~~~~n~~~~~l~~~a~~~p--d~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~-~Gv~~Gd~V~i~~~~~~ 150 (663)
T 1ry2_A 74 AWFLNGQLNACYNCVDRHALKTP--NKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS-MGVRKGDTVAVYMPMVP 150 (663)
T ss_dssp CBSTTCEECHHHHHTHHHHTTCT--TSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHT-SCCCTTCEEEECCCSSH
T ss_pred CcCCCCCccHHHHHHHHHhccCC--CceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCH
Confidence 44444446655444433255566 79999972 24578999999999999999998 6 99999999999999999
Q ss_pred chHHHHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhHH------------Hhh-c-CCCC-EEEEcCCCC
Q 041055 116 LYPSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQ------------KLT-K-VNVP-IIVTSRDQS 180 (526)
Q Consensus 116 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------------~~~-~-~~~~-~i~~~~~~~ 180 (526)
++++++|||+++|++++|+++.++.+++.+++++++++++|+++.... ... . ...+ +++++....
T Consensus 151 e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~ 230 (663)
T 1ry2_A 151 EAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNN 230 (663)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCC
T ss_pred HHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCC
Confidence 999999999999999999999999999999999999999999865321 111 1 1223 444432211
Q ss_pred ------CCCcchHHHHhhhcCCCCCCCCCCCCCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHH-HhhhhcccCCCCcE
Q 041055 181 ------NNKSVSVEELIECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQL-LRWTVDVTHAQNDI 253 (526)
Q Consensus 181 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~ 253 (526)
......+.++...... ..+.....++++++|+|||||||+||||+++|++++..... ....++ +.++|+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~--~~~~d~ 306 (663)
T 1ry2_A 231 PSVAFHAPRDLDWATEKKKYKT--YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFD--THQEDV 306 (663)
T ss_dssp SSCCCCSSSEEEHHHHHTTSCS--CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSC--CCSSCE
T ss_pred CccccCCCccccHHHHHhhcCC--CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcC--CCCCcE
Confidence 1112334444432211 12222456799999999999999999999999998766543 334444 678999
Q ss_pred EEEeCChhHHHHHHHHHHhhcccCcEEEEecC----CCHHHHHHHHHhcCccEeecccHHHHHHHhhc---cCCCCCCCc
Q 041055 254 FLCMIPMFHIYGLAFFATGLFCCGVTIVVMQR----FDLQAMIEAIKTYQVNNIPLVPPVILGLVKYC---KDSSYLTSL 326 (526)
Q Consensus 254 ~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~~~~~l~~l 326 (526)
+++..|++|++|..+.++.++..|+++++.+. +++..+++.|+++++|+++++|++++.|++.. .+..++++|
T Consensus 307 ~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sL 386 (663)
T 1ry2_A 307 FFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSL 386 (663)
T ss_dssp EEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTC
T ss_pred EEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCce
Confidence 99999999999987778899999999999864 58899999999999999999999999998863 245678999
Q ss_pred eEEEEecCCCCHHHHHHHHHhCC--CCceeeccccccccceeecccCcccccCCCCcccccCCCcEEEEEeCCCCccCCC
Q 041055 327 RRVGSGAAPLSKELADEFRAKFP--WVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPP 404 (526)
Q Consensus 327 r~v~~gG~~l~~~~~~~~~~~~~--~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~ 404 (526)
|.+++||+++++++.+++.+.++ ++++++.||+||++..++...........++++|+|++|++++|+|++++++++.
T Consensus 387 r~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~ 466 (663)
T 1ry2_A 387 RCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNT 466 (663)
T ss_dssp CEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEEC
T ss_pred EEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCC
Confidence 99999999999999999999984 3899999999999876665433111122378999999999999999758889988
Q ss_pred -CCcceEEEec--cccccccCCCHHHHhcccC--CCCeeeccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHh
Q 041055 405 -YQRGELWLKS--PTIMRGYFGNEEATAAAFD--EDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLL 479 (526)
Q Consensus 405 -g~~Gel~v~~--~~~~~gy~~~~~~t~~~~~--~~~~~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~ 479 (526)
|+.|||+|+| |++++|||++++.+.+.|. .+|||+|||+|++|+||+++|+||+||+||++|++|+|.|||++|.
T Consensus 467 ~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~ 546 (663)
T 1ry2_A 467 SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII 546 (663)
T ss_dssp SSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHH
T ss_pred CCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHH
Confidence 9999999999 5899999999999988874 3789999999999999999999999999999999999999999999
Q ss_pred cCCCcccEEEEeeeCCCCCceEEEEEEeCCCCC---C-C------HHHHHHHHHhcC
Q 041055 480 SHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQ---L-T------EDQVMQFVTSQL 526 (526)
Q Consensus 480 ~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~~---~-~------~~~l~~~l~~~l 526 (526)
+||.|.+|+|++.+++..|+.++|||+++++.. . + .++|+++|+++|
T Consensus 547 ~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L 603 (663)
T 1ry2_A 547 EDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDI 603 (663)
T ss_dssp SSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHT
T ss_pred hCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhC
Confidence 999999999999999989999999999987754 2 2 478888888765
No 16
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=2.1e-73 Score=595.48 Aligned_cols=462 Identities=20% Similarity=0.294 Sum_probs=385.8
Q ss_pred CCh-hhhhcccCCCC-----CCCCCceEEEeCC---CCceeCHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEECCCCCch
Q 041055 48 LDT-ATCVLSRFPHP-----DLAESRVALIDSA---THERVTYAQLHRSIRSLASGLYHAL-GVRKGDVVFVLAPNSLLY 117 (526)
Q Consensus 48 ~~~-~~~~~~~~~~~-----~~~~~~~a~~~~~---~~~~~Ty~el~~~~~~lA~~L~~~~-gl~~gd~V~i~~~n~~~~ 117 (526)
.|+ .+++... ++. .| +++|+++.+ .++++||+||.++++++|++|.+ . |+++||+|+++++|+++|
T Consensus 37 ~~~~~~~l~~~-a~~~~a~~~p--~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~~Gv~~gd~V~i~~~n~~e~ 112 (570)
T 3c5e_A 37 FNFASDVLDHW-ADMEKAGKRP--PSPALWWVNGKGKELMWNFRELSENSQQAANVLSG-ACGLQRGDRVAVVLPRVPEW 112 (570)
T ss_dssp CCHHHHTHHHH-HHHHHTTSSC--CCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHT-TTCCCTTCEEEEECCSCHHH
T ss_pred ccHHHHHHHHH-HhhccccCCC--CceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHH-ccCCCCCCEEEEEcCCCHHH
Confidence 454 4555444 444 66 799998732 24789999999999999999987 7 999999999999999999
Q ss_pred HHHHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhHHHhhc-----CCCC-EEEEcCCCCCCCcchHHHHh
Q 041055 118 PSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTK-----VNVP-IIVTSRDQSNNKSVSVEELI 191 (526)
Q Consensus 118 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~-----~~~~-~i~~~~~~~~~~~~~~~~~~ 191 (526)
++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+.. ...+ ++.++.. ....+..+.++.
T Consensus 113 ~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 191 (570)
T 3c5e_A 113 WLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEK-SCDGWLNFKKLL 191 (570)
T ss_dssp HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSS-CCTTSEEHHHHH
T ss_pred HHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEeccc-CccccccHHHHh
Confidence 99999999999999999999999999999999999999999876655432 1222 3334321 122344455544
Q ss_pred hhcCCCCCCCCCCCCCCCEEEEEcCCCCCCCchHHHhhhHHHHH--HHHHHhhhhcccCCCCcEEEEeCChhHHHHHHHH
Q 041055 192 ECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFIS--IMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFF 269 (526)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~--~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~ 269 (526)
..... ..+.....++++++|+|||||||.||||+++|+ ++. ..... ..++ +.++|+++..+|++|.+++...
T Consensus 192 ~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~--~~~~d~~~~~~p~~~~~~~~~~ 265 (570)
T 3c5e_A 192 NEAST--THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTG--LQASDIMWTISDTGWILNILCS 265 (570)
T ss_dssp HHSCS--CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTS--CCTTCEEEECCCTTSHHHHHHT
T ss_pred hcccc--cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcC--CCCCceEEEcCchHHHHHHHHH
Confidence 33222 112224567899999999999999999999999 444 33322 3333 6789999999999999998667
Q ss_pred HHhhcccCcEEEEec--CCCHHHHHHHHHhcCccEeecccHHHHHHHhhccCCCCCCCceEEEEecCCCCHHHHHHHHHh
Q 041055 270 ATGLFCCGVTIVVMQ--RFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAK 347 (526)
Q Consensus 270 ~~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~ 347 (526)
++.++..|+++++.+ .+++..+++.|+++++|+++++|+++..|++......+++++|.+++||+++++++.++|.+.
T Consensus 266 ~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~ 345 (570)
T 3c5e_A 266 LMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQ 345 (570)
T ss_dssp THHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred HHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCcCCHHHHHHHHHH
Confidence 788899999999986 689999999999999999999999999998875455678999999999999999999999998
Q ss_pred CCCCceeeccccccccceeecccCcccccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceEEEe-----ccccccccC
Q 041055 348 FPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLK-----SPTIMRGYF 422 (526)
Q Consensus 348 ~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel~v~-----~~~~~~gy~ 422 (526)
+ ++++++.||+||++..++..... ....+++|+|+++++++|+| ++++++++|+.|||+|+ |++++.||+
T Consensus 346 ~-g~~i~~~YG~TE~~~~~~~~~~~---~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~ 420 (570)
T 3c5e_A 346 T-GLDIRESYGQTETGLTCMVSKTM---KIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYV 420 (570)
T ss_dssp H-SCCCEEEEEETTTEEEEECCTTS---CCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCCCEET
T ss_pred h-CCchhhccchhhcccceecCccc---ccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhhcccc
Confidence 8 78999999999998665543221 12378999999999999999 56889999999999999 999999999
Q ss_pred CCHHHHhcccCCCCeeeccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEE
Q 041055 423 GNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPM 502 (526)
Q Consensus 423 ~~~~~t~~~~~~~~~~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~ 502 (526)
++|+.|.+.| .++||+|||+|++|+||+++|.||.||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++
T Consensus 421 ~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~ 499 (570)
T 3c5e_A 421 DNPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVK 499 (570)
T ss_dssp TCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEE
T ss_pred CChhHhhhhh-cCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEE
Confidence 9999999999 579999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEEEeCCCC--CC---CHHHHHHHHHhcC
Q 041055 503 AYVVRAAGS--QL---TEDQVMQFVTSQL 526 (526)
Q Consensus 503 a~vv~~~~~--~~---~~~~l~~~l~~~l 526 (526)
|+|++.++. .. ..++|+++|+++|
T Consensus 500 a~vv~~~~~~~~~~~~~~~~l~~~l~~~L 528 (570)
T 3c5e_A 500 AFVVLASQFLSHDPEQLTKELQQHVKSVT 528 (570)
T ss_dssp EEEEECGGGTTSCHHHHHHHHHHHHHHHS
T ss_pred EEEEECCcccCcchHHHHHHHHHHHHhhC
Confidence 999988764 11 2467888888764
No 17
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=2.3e-74 Score=596.59 Aligned_cols=455 Identities=27% Similarity=0.394 Sum_probs=322.7
Q ss_pred CChhhhhcccCCCCCCCCCceEEEeCCCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHHHHHHHHHc
Q 041055 48 LDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSL 127 (526)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~ 127 (526)
.|+.+.+... ++.+| +++|+++. ++++||+||.++++++|++|.+ +|+++||+|+++++|++++++++|||+++
T Consensus 6 ~tl~~~l~~~-a~~~p--d~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 79 (509)
T 3ivr_A 6 FTLADVYRRN-AALFP--DRTAFMVD--GVRLTHRDYLARAERLASGLLR-DGVHTGDRVAILSQNCSEMIELIGAVALI 79 (509)
T ss_dssp CCHHHHHHHH-HHHST--TSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHH-HHHCC--CceEEEEC--CcEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 7899998888 67777 79999984 7899999999999999999998 99999999999999999999999999999
Q ss_pred CCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhHHHhh----c-CCCCEEEEcCCCCCCCcchHHHHhhhcCCCCCCCC
Q 041055 128 GAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLT----K-VNVPIIVTSRDQSNNKSVSVEELIECCDAADELPG 202 (526)
Q Consensus 128 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~----~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (526)
|++++|++|.++.+++.+++++++++++|++.+....+. . .....+..... ....+..+ ...... ...+.
T Consensus 80 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~-~~~~~ 154 (509)
T 3ivr_A 80 GAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGD-GSGPFAPF---KDLASD-TPFSA 154 (509)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSC-CCSSCEEG---GGTCCC-SCCCC
T ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCC-CCcChhhH---hhccCC-CCCCc
Confidence 999999999999999999999999999999987655422 1 12222322221 11112121 111111 12222
Q ss_pred CCCCCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhhcccCCCCcEEEEeCChhHHHHHHHHHHhhcccCcEEEE
Q 041055 203 CQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVV 282 (526)
Q Consensus 203 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~ 282 (526)
....++++++|+|||||||.||||+++|+++.+.+......++ +.++|+++..+|++|.+|+...+...+..|+ .++
T Consensus 155 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~-~~~ 231 (509)
T 3ivr_A 155 PEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWR--LTEADVNLGMLPLFHVTGLGLMLTLQQAGGA-SVI 231 (509)
T ss_dssp CCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTT--CCTTCEEEECSCTTSHHHHHHHHHHHHHTCE-EEE
T ss_pred CCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhC--CCCCcEEEEeCCCcchhHHHHHHHHHHhCCc-EEE
Confidence 3567899999999999999999999999999998888777766 7789999999999999999544444554454 444
Q ss_pred ecCCCHHHHHHHHHhcCccEeecccHHHHHHHhhccCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCceeeccccccc
Q 041055 283 MQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTES 362 (526)
Q Consensus 283 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~l~~~yG~tE~ 362 (526)
...+++..+++.++++++|++.++|+++..+++.. ....++++|.++.+|++ ++.+.+.+.+|++++++.||+||+
T Consensus 232 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~-~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~ 307 (509)
T 3ivr_A 232 AAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA-APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSET 307 (509)
T ss_dssp CSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC-CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGG
T ss_pred ecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc-cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCcccc
Confidence 55889999999999999999999999999999875 45668899999999987 888999999999999999999999
Q ss_pred cceeecccCcccccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceEEEeccccccccCCCHHHHhcccCCCCeeeccc
Q 041055 363 CGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGD 442 (526)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~~TGD 442 (526)
+.+++...... ...++|+|+++++++|+| ++++++++|+.|||+|+||+++.||+++|+.|.+.| .+|||+|||
T Consensus 308 ~~~~~~~~~~~----~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGD 381 (509)
T 3ivr_A 308 SGLSTFAPYRD----RPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGD 381 (509)
T ss_dssp TEEEEEEEGGG----STTSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEE
T ss_pred ccccccCcccc----CCCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccccCCHHHhHHHh-hcCCccccc
Confidence 88766543322 145699999999999999 558999999999999999999999999999999999 489999999
Q ss_pred eEEEcCCCcEEEEccc--cceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHH
Q 041055 443 LCYFDGEGFLYIVDRI--KELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQ 520 (526)
Q Consensus 443 ~~~~~~~G~l~~~GR~--~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~l~~ 520 (526)
+|++++||++++.||. ||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++|+|++.++...+.++|++
T Consensus 382 l~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~ 461 (509)
T 3ivr_A 382 MGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAE 461 (509)
T ss_dssp EEEECTTSCEEEEEEC----------------------------------------------------------------
T ss_pred EEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHH
Confidence 9999999999999999 99999999999999999999999999999999999998999999999999888888899999
Q ss_pred HHHhcC
Q 041055 521 FVTSQL 526 (526)
Q Consensus 521 ~l~~~l 526 (526)
+|+++|
T Consensus 462 ~l~~~L 467 (509)
T 3ivr_A 462 FVASLI 467 (509)
T ss_dssp ------
T ss_pred HHHhhC
Confidence 998875
No 18
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=5e-73 Score=591.73 Aligned_cols=446 Identities=21% Similarity=0.284 Sum_probs=376.6
Q ss_pred CChhhhhcccCCCCCCCCCceEEEeCCCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHHHHHHHHHc
Q 041055 48 LDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSL 127 (526)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~ 127 (526)
.++.+++... ++.+| +++|+++. ++++||+||.+++.++|++|.+ +|+++||+|+++++|+++|++++|||+++
T Consensus 39 ~~l~~~l~~~-a~~~p--~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 112 (563)
T 1amu_A 39 KTIHQLFEEQ-VSKRP--NNVAIVCE--NEQLTYHELNVKANQLARIFIE-KGIGKDTLVGIMMEKSIDLFIGILAVLKA 112 (563)
T ss_dssp CCHHHHHHHH-HHHCT--TSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CcHHHHHHHH-HHHCC--CCeEEEeC--CceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 5788888777 66677 79999984 6899999999999999999998 99999999999999999999999999999
Q ss_pred CCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhHHHhhcCC--CCEEEEcCCCCCCCcchHHHHhhhcCCCCCCCCCCC
Q 041055 128 GAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVN--VPIIVTSRDQSNNKSVSVEELIECCDAADELPGCQL 205 (526)
Q Consensus 128 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (526)
|++++|++|.++.+++.+++++++++++|++.+....+.... ..+..+.... + ... . ........
T Consensus 113 Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~-~-~~~~~~~~ 179 (563)
T 1amu_A 113 GGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDT-------I----KIR-E-GTNLHVPS 179 (563)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCST-------T----TTS-C-CSCCCCCC
T ss_pred CCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeecchh-------h----ccc-c-CccCCCCC
Confidence 999999999999999999999999999999987655544321 1222222110 0 000 0 01111134
Q ss_pred CCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhhcccCCCCcEEEEeCChhHHHHHHHHHHhhcccCcEEEEecC
Q 041055 206 TQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQR 285 (526)
Q Consensus 206 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~ 285 (526)
.++++++|+|||||||.||||+++|+++.+.+......++ +.++|+++..+|++|..++ ..++.++..|+++++.+.
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~--~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~ 256 (563)
T 1amu_A 180 KSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLN--VTEKDRIGQFASISFDASV-WEMFMALLTGASLYIILK 256 (563)
T ss_dssp CTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSC--CCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcC--CCCCCEEEEeCCccHHHHH-HHHHHHHHCCCEEEEcCh
Confidence 6789999999999999999999999999988777666655 6789999999999999888 567789999999999875
Q ss_pred ---CCHHHHHHHHHhcCccEeecccHHHHHHHhhccCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCceeeccccccc
Q 041055 286 ---FDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTES 362 (526)
Q Consensus 286 ---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~l~~~yG~tE~ 362 (526)
+++..+++.++++++|++.++|+++..+.. ..++++|.+++||+++++++.++|.+. +++++.||+||+
T Consensus 257 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~-----~~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~~YG~TE~ 328 (563)
T 1amu_A 257 DTINDFVKFEQYINQKEITVITLPPTYVVHLDP-----ERILSIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTET 328 (563)
T ss_dssp HHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT-----TTCCSCSEEEEESSCCCHHHHHHHTTT---SEEEEEECCGGG
T ss_pred HhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh-----cccccccEEEEEEecCCHHHHHHHHhC---CeEEEEECcCHH
Confidence 689999999999999999999999877743 246899999999999999999998764 689999999999
Q ss_pred cceeecccCcccccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceEEEeccccccccCCCHHHHhcccCC------CC
Q 041055 363 CGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDE------DG 436 (526)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~------~~ 436 (526)
+.+++.............++|+|+++++++|+| ++++++++|+.|||+|+||++++|||++|+.|+++|.. ++
T Consensus 329 ~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~ 407 (563)
T 1amu_A 329 TICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEK 407 (563)
T ss_dssp SSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSE
T ss_pred hHhheeeecccccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCE
Confidence 876665433222222367899999999999999 67889999999999999999999999999999999843 46
Q ss_pred eeeccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCCCCCCCHH
Q 041055 437 WLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTED 516 (526)
Q Consensus 437 ~~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~~~~~~ 516 (526)
||+|||+|++|+||+|+|+||.||+||++|++|+|.|||++|.+||.|.+|+|++.+++..++.++|+|++.+ ..+.+
T Consensus 408 w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~--~~~~~ 485 (563)
T 1amu_A 408 LYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK--HIPLE 485 (563)
T ss_dssp EEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS--CCCHH
T ss_pred EEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC--CCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999988999999999764 46788
Q ss_pred HHHHHHHhcC
Q 041055 517 QVMQFVTSQL 526 (526)
Q Consensus 517 ~l~~~l~~~l 526 (526)
+|+++|+++|
T Consensus 486 ~l~~~l~~~L 495 (563)
T 1amu_A 486 QLRQFSSEEL 495 (563)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHhhC
Confidence 9999999875
No 19
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1.9e-74 Score=604.49 Aligned_cols=451 Identities=22% Similarity=0.271 Sum_probs=319.9
Q ss_pred CChhhhhcccCCCCCCCCCceEEEeCCCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHHHHHHHHHc
Q 041055 48 LDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSL 127 (526)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~ 127 (526)
.++++++..+ ++++| +++|+++. ++++||+||.++++++|++|.+ +|+++||+|+++++|++++++++|||+++
T Consensus 75 ~~l~~~l~~~-a~~~p--d~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 148 (570)
T 4gr5_A 75 ACVHELFEAQ-AARAP--DAVALLHE--ADELTYGALNERANRLAHRLVG-LGVAPGTLVGVHLERGFDMVVALLAVLKA 148 (570)
T ss_dssp CCHHHHHHHH-HHHCT--TSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHH-HHHCC--CCeEEECC--CCcEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 5788988887 67777 79999984 6899999999999999999998 99999999999999999999999999999
Q ss_pred CCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhHHHhhcCCCCEEEEcCCCCCCCcchHHHHhhhcCCCCCCCCCCCCC
Q 041055 128 GAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEELIECCDAADELPGCQLTQ 207 (526)
Q Consensus 128 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (526)
|++++|++|.++.+++.+++++++++++|++.+....+.. ...+.+.... ..... .........+
T Consensus 149 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~------------~~~~~-~~~~~~~~~~ 213 (570)
T 4gr5_A 149 GGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTG--TTTLYVEDEA------------ASDAP-AGNLATGVGP 213 (570)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCS--SEEEECCC--------------------CCCCCCCCCT
T ss_pred CCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccC--Ccceeeeccc------------ccccc-ccccCCCCCC
Confidence 9999999999999999999999999999998765443321 1111111100 00000 1111224578
Q ss_pred CCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhhcccCCCCcEEEEeCChhHHHHHHHHHHhhcccCcEEEEec--C
Q 041055 208 DDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQ--R 285 (526)
Q Consensus 208 ~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~--~ 285 (526)
+++++|+|||||||.||||+++|+++.+.... ...+ .+.++++++..+|++|..+. ..++.++..|+++++.+ .
T Consensus 214 ~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~--~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~ 289 (570)
T 4gr5_A 214 EDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA--GFGPDEVFLQCSPVSWDAFG-LELFGALLFGARCVLQSGQN 289 (570)
T ss_dssp TSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS--CCSTTCEEEECSCTTSSTHH-HHHHHHHTTTCEEEECSSSS
T ss_pred CCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhc--CCCCCCEEEEecCccHHHHH-HHHHHHHhcCCEEEEcCCcc
Confidence 99999999999999999999999999765543 2222 36789999999999886665 56778999999999986 5
Q ss_pred CCHHHHHHHHHhcCccEeecccHHHHHHHhhccCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCceeeccccccccce
Q 041055 286 FDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESCGA 365 (526)
Q Consensus 286 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~ 365 (526)
+++..+++.|+++++|++.++|+++..|++... ..++++|.+++||+++++++.+++.+.++++++++.||+||++++
T Consensus 290 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~ 367 (570)
T 4gr5_A 290 PDPLEIGELVARHGVTMLQLSASLFNFLVDEVP--EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGF 367 (570)
T ss_dssp CCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG--GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSC
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch--hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheee
Confidence 789999999999999999999999999987632 357899999999999999999999999989999999999999876
Q ss_pred eecccCc-ccccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceEEEeccccccccCCCHHHHhcccCC--------CC
Q 041055 366 TTFMVSP-KQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDE--------DG 436 (526)
Q Consensus 366 ~~~~~~~-~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~--------~~ 436 (526)
++..... ........++|+|+++++++|+| ++++++++|+.|||+|+||++++|||++|+.|.++|.. +|
T Consensus 368 ~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~ 446 (570)
T 4gr5_A 368 TTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGER 446 (570)
T ss_dssp SEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCE
T ss_pred eeeeeecccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCE
Confidence 6654322 12222356799999999999999 66899999999999999999999999999999999853 37
Q ss_pred eeeccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCCC-CCCCH
Q 041055 437 WLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAG-SQLTE 515 (526)
Q Consensus 437 ~~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~-~~~~~ 515 (526)
||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||.|.+|+|++.+++..++.++|+|+++++ ...++
T Consensus 447 w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~ 526 (570)
T 4gr5_A 447 MYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDA 526 (570)
T ss_dssp EEEEEEEEEECTTSCEEEEEC-----------------------------------------------------------
T ss_pred EEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCH
Confidence 99999999999999999999999999999999999999999999999999999999998889999999998754 35677
Q ss_pred HHHHHHHHhcC
Q 041055 516 DQVMQFVTSQL 526 (526)
Q Consensus 516 ~~l~~~l~~~l 526 (526)
++|+++|+++|
T Consensus 527 ~~l~~~l~~~l 537 (570)
T 4gr5_A 527 AELRRHVAEAL 537 (570)
T ss_dssp -----------
T ss_pred HHHHHHHHhhC
Confidence 89999998875
No 20
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=3.6e-73 Score=587.66 Aligned_cols=456 Identities=21% Similarity=0.261 Sum_probs=386.9
Q ss_pred CChhhhhcccCCCCCCCCCceEEEeCCCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHHHHHHHHHc
Q 041055 48 LDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSL 127 (526)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~ 127 (526)
+|+.+.+..+ ++.+| +++|+++. ++++||+||.++++++|++|.+..|.++|++|+++++|+++|++++|||+++
T Consensus 1 m~l~~~l~~~-a~~~p--~~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~ 75 (511)
T 3e7w_A 1 MKLLHAIQTH-AETYP--QTDAFRSQ--GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKA 75 (511)
T ss_dssp CCHHHHHHHH-HHHST--TSEEEEET--TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHH-HHHCC--CCeEEEcC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHh
Confidence 3677777777 67777 79999984 6899999999999999999987458889999999999999999999999999
Q ss_pred CCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhHHHhhcCCCCEEEEcCCCCCCCcchHHHHhhhcCCCCCCCCCCCCC
Q 041055 128 GAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEELIECCDAADELPGCQLTQ 207 (526)
Q Consensus 128 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (526)
|++++|+++.++.+++.+++++++++++|++............ ....+.++...... ...+.....+
T Consensus 76 G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~-~~~~~~~~~~ 142 (511)
T 3e7w_A 76 GHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQI------------QTVSAEELLENEGG-SVSQDQWVKE 142 (511)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCCSS------------CEEEHHHHHTSCSC-CCCGGGSCCT
T ss_pred CCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhccccc------------ceecHhhhhccccC-CccccccCCC
Confidence 9999999999999999999999999999996543211111111 11223333222111 1111224567
Q ss_pred CCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhhcccCCCCcEEEEeCChhHHHHHHHHHHhhcccCcEEEEecC--
Q 041055 208 DDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQR-- 285 (526)
Q Consensus 208 ~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-- 285 (526)
+++++|+|||||||.||+|+++|+++.+.+......++ ..+++++++.+|++|.+++ ..++.++..|+++++.+.
T Consensus 143 ~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~ 219 (511)
T 3e7w_A 143 HETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFP--VSGGKIFLNQAPFSFDLSV-MDLYPCLQSGGTLHCVTKDA 219 (511)
T ss_dssp TSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHST--TTTTCEEEECSCTTSTHHH-HHHHHHHHTTCEEEECCHHH
T ss_pred CCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcC--CCccceEEEeCCccHHHHH-HHHHHHHhcCCEEEEcChhh
Confidence 89999999999999999999999999998888777666 6789999999999999998 678889999999999875
Q ss_pred -CCHHHHHHHHHhcCccEeecccHHHHHHHhh-ccCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCceeecccccccc
Q 041055 286 -FDLQAMIEAIKTYQVNNIPLVPPVILGLVKY-CKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESC 363 (526)
Q Consensus 286 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~l~~~yG~tE~~ 363 (526)
+++..+++.++++++|++.++|+++..+++. ......++++|.+++||+++++++.+++.+.||++++++.||+||++
T Consensus 220 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~ 299 (511)
T 3e7w_A 220 VNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEAT 299 (511)
T ss_dssp HHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGS
T ss_pred hcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchhe
Confidence 6899999999999999999999999999887 34566789999999999999999999999999999999999999998
Q ss_pred ceeecccCccc--ccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceEEEeccccccccCCCHHHHhcccC---CCCee
Q 041055 364 GATTFMVSPKQ--ARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFD---EDGWL 438 (526)
Q Consensus 364 ~~~~~~~~~~~--~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~---~~~~~ 438 (526)
..++....... ......++|+|.++++++|+| ++++++++|+.|||+|+||++++|||++|+.|++.|. +..||
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~ 378 (511)
T 3e7w_A 300 VAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAY 378 (511)
T ss_dssp SCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEE
T ss_pred eeeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEE
Confidence 77664332211 112356899999999999999 5689999999999999999999999999999999983 22279
Q ss_pred eccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCCCCCCCH---
Q 041055 439 KTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTE--- 515 (526)
Q Consensus 439 ~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~~~~~--- 515 (526)
+|||+|++ +||+++++||.||+||++|++|+|.|||++|.+||.|.+|+|++.+++..++.++|+|++.++...+.
T Consensus 379 ~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~ 457 (511)
T 3e7w_A 379 RTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQL 457 (511)
T ss_dssp EEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHH
T ss_pred eCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhH
Confidence 99999999 59999999999999999999999999999999999999999999999889999999999988765554
Q ss_pred -HHHHHHHHhcC
Q 041055 516 -DQVMQFVTSQL 526 (526)
Q Consensus 516 -~~l~~~l~~~l 526 (526)
++++++|+++|
T Consensus 458 ~~~l~~~l~~~L 469 (511)
T 3e7w_A 458 TSAIKKELAASL 469 (511)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHhhC
Confidence 56888887764
No 21
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=3.9e-72 Score=592.20 Aligned_cols=456 Identities=25% Similarity=0.368 Sum_probs=390.5
Q ss_pred CChhhhhcccCCCCCCCCCceEEEeCCCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHHHHHHHHHc
Q 041055 48 LDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSL 127 (526)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~ 127 (526)
.++++.+..+ ++ | |++|+++. ++++||+||.++++++|++|.+ +|+++||+|+++++|++++++++|||+++
T Consensus 27 ~~l~~~~~~~-a~--p--d~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~V~l~~~~s~~~vva~lA~l~a 98 (617)
T 3rg2_A 27 LPLTDILTRH-AA--S--DSIAVIDG--ERQLSYRELNQAADNLACSLRR-QGIKPGETALVQLGNVAELYITFFALLKL 98 (617)
T ss_dssp CCTTHHHHTT-TT--C--CSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHh-hC--C--CCeEEecC--CceEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHHhc
Confidence 6788888877 54 4 89999984 6899999999999999999998 89999999999999999999999999999
Q ss_pred CCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhH--------HHhh--cCCCCEEEEcCCCCCCCcchHHHHhhhcCCC
Q 041055 128 GAILSPANSINTESEIVKQVRDSGAKLIISASEEL--------QKLT--KVNVPIIVTSRDQSNNKSVSVEELIECCDAA 197 (526)
Q Consensus 128 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 197 (526)
|++++|++|.++.+++.++++++++++++++.... ..+. ......+....... ...+.+......
T Consensus 99 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-- 173 (617)
T 3rg2_A 99 GVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSG---EHNLQDAINHPA-- 173 (617)
T ss_dssp TCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCS---TTBHHHHHHSCC--
T ss_pred CeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeeccccc---ccchhhhhcccc--
Confidence 99999999999999999999999999999987543 1111 12333333332211 112222222111
Q ss_pred CCCCCCCCCCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhhcccCCCCcEEEEeCChhHHHHHHH-HHHhhccc
Q 041055 198 DELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAF-FATGLFCC 276 (526)
Q Consensus 198 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~~l~~ 276 (526)
...+.....++++++|+|||||||.||||+++|+++.+.+......++ +.+++++++.+|++|.+++.. .++.++..
T Consensus 174 ~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~--~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~ 251 (617)
T 3rg2_A 174 EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQ--FTQQTRYLCAIPAAHNYAMSSPGSLGVFLA 251 (617)
T ss_dssp SSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHT--CCTTCEEEECSCTTSHHHHHSSHHHHHHHH
T ss_pred cccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcC--CCCcceEEEeccchhhhhhhHHHHHHHHHc
Confidence 112222456789999999999999999999999999998888777776 678999999999999998854 57889999
Q ss_pred CcEEEEecCCCHHHHHHHHHhcCccEeecccHHHHHHHhhc---cCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCce
Q 041055 277 GVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYC---KDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVEL 353 (526)
Q Consensus 277 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~l 353 (526)
|+++++.+..++..+++.++++++|++.++|+++..+++.. .....++++|.+++||+++++++.++|.+.+ ++++
T Consensus 252 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~ 330 (617)
T 3rg2_A 252 GGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQL 330 (617)
T ss_dssp TCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcE
Confidence 99999999899999999999999999999999999998862 2234789999999999999999999999998 7899
Q ss_pred eeccccccccceeecccCcccccCCCCcccccC-CCcEEEEEeCCCCccCCCCCcceEEEeccccccccCCCHHHHhccc
Q 041055 354 RQGYGLTESCGATTFMVSPKQARARSGSCGALS-PTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAF 432 (526)
Q Consensus 354 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~ 432 (526)
++.||+||++..++....... ....++|.|. ++.+++|+| ++++++|.|+.|||+|+||++++||+++|+.|.++|
T Consensus 331 ~~~YG~tE~~~~~~~~~~~~~--~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f 407 (617)
T 3rg2_A 331 QQVFGMAEGLVNYTRLDDSAE--KIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAF 407 (617)
T ss_dssp EEEEEETTEEEEECCTTSCHH--HHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHB
T ss_pred EEEeccCcceeecccCCCccc--ccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhcc
Confidence 999999999765543322211 1145789997 788999999 678999999999999999999999999999999999
Q ss_pred CCCCeeeccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCCCCC
Q 041055 433 DEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQ 512 (526)
Q Consensus 433 ~~~~~~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~~ 512 (526)
..++||+|||+|++++||.++++||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++|+|+..+ .
T Consensus 408 ~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~--~ 485 (617)
T 3rg2_A 408 DANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE--P 485 (617)
T ss_dssp CTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--C
T ss_pred CCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999876 4
Q ss_pred CCHHHHHHHHHh
Q 041055 513 LTEDQVMQFVTS 524 (526)
Q Consensus 513 ~~~~~l~~~l~~ 524 (526)
.+.+++++++++
T Consensus 486 ~~~~~l~~~l~~ 497 (617)
T 3rg2_A 486 LRAVQVRRFLRE 497 (617)
T ss_dssp CCHHHHHHHHHT
T ss_pred CCHHHHHHHHHh
Confidence 677899999987
No 22
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=2.5e-72 Score=584.08 Aligned_cols=461 Identities=25% Similarity=0.359 Sum_probs=372.3
Q ss_pred CC-hhhhhcccCCCCCCCCCceEEEeCCCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHHHHHHHHH
Q 041055 48 LD-TATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFS 126 (526)
Q Consensus 48 ~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~ 126 (526)
+| +.+++... ++ +| +++|+++. ++++||+||.++++++|++|.+ +|+++||+|+++++|+++|++++|||++
T Consensus 23 ~~~~~~~l~~~-~~-~p--~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~ 95 (529)
T 2v7b_A 23 FNFAAYLFRLN-ET-RA--GKTAYIDD--TGSTTYGELEERARRFASALRT-LGVHPEERILLVMLDTVALPVAFLGALY 95 (529)
T ss_dssp CCHHHHHHHHT-GG-GT--TSEEEECS--SCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSTHHHHHHHHHHH
T ss_pred eeHHHHHHHhh-hc-cC--CceEEEeC--CCCccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 45 55555555 55 66 79999985 5899999999999999999998 9999999999999999999999999999
Q ss_pred cCCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhHHHhhcC-----C--CCEEEEcCCCCCC-CcchHHHHhhhcCCCC
Q 041055 127 LGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKV-----N--VPIIVTSRDQSNN-KSVSVEELIECCDAAD 198 (526)
Q Consensus 127 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~--~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~ 198 (526)
+|++++|+++.++.+++.+++++++++++|++.+....+... . ..+++.+...... ....+.+.......
T Consensus 96 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 173 (529)
T 2v7b_A 96 AGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAP-- 173 (529)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCC--
T ss_pred cCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCC--
Confidence 999999999999999999999999999999998765544321 1 2233333221101 01234444332211
Q ss_pred CCCCCCCCCCCEEEEEcCCCCCCCchHHHhhhHHH-HHHHHHHhhhhcccCCCCcEEEEeCChhHHHHHHHHHHhhcccC
Q 041055 199 ELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANF-ISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCG 277 (526)
Q Consensus 199 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l-~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G 277 (526)
..+.....++++++++|||||||.||+|+++|+++ ..........++ +.++|++++.+|++|.+|+...++.++..|
T Consensus 174 ~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~--~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G 251 (529)
T 2v7b_A 174 AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILG--IAENDVVFSAAKLFFAYGLGNGLTFPLSVG 251 (529)
T ss_dssp CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCC--CCTTCEEEESSCTTSHHHHHHHTHHHHHHT
T ss_pred cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccC--CCCCcEEEEeecHHHHHHHHHHHHHHHhcC
Confidence 11122456799999999999999999999999999 554443333333 678999999999999999866677889999
Q ss_pred cEEEEe-cCCCHHHHHHHHHhcCccEeecccHHHHHHHhhcc-CCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCceee
Q 041055 278 VTIVVM-QRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCK-DSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQ 355 (526)
Q Consensus 278 ~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~l~~ 355 (526)
+++++. +.+++..+++.++++++|+++++|+++..+++... ......++|.+++||+++++++.+++++.+ ++++++
T Consensus 252 ~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~~ 330 (529)
T 2v7b_A 252 ATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHF-GCEILD 330 (529)
T ss_dssp CEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHH-SCCEEE
T ss_pred cEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHh-CCceee
Confidence 999987 67899999999999999999999999999987632 222124899999999999999999999998 789999
Q ss_pred ccccccccceeecccCcccccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceEEEeccccccccCCCHHHHhcccCCC
Q 041055 356 GYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDED 435 (526)
Q Consensus 356 ~yG~tE~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~ 435 (526)
.||+||++.+++...... ...+++|+|+++++++|+| ++++++++|+.|||+|+||+++.|||++++.|.+.| .+
T Consensus 331 ~YG~TE~~~~~~~~~~~~---~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~ 405 (529)
T 2v7b_A 331 GIGSTEMLHIFLSNRAGA---VEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LG 405 (529)
T ss_dssp EEECTTTSSEEEECCTTC---CCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-ET
T ss_pred eEchhhcCceeeccccCC---CccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhh-hc
Confidence 999999976655433222 2378999999999999999 678999999999999999999999999999999999 48
Q ss_pred CeeeccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCCCCCC--
Q 041055 436 GWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQL-- 513 (526)
Q Consensus 436 ~~~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~~~-- 513 (526)
+||+|||+|++++||++++.||.||+||++|++|+|.|||++|.+||+|.+++|++. ++..++.++|+|++.++...
T Consensus 406 ~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~ 484 (529)
T 2v7b_A 406 EWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSE 484 (529)
T ss_dssp TEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCH
T ss_pred CCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcch
Confidence 999999999999999999999999999999999999999999999999999999999 66678899999999876532
Q ss_pred -CHHHHHHHHHhcC
Q 041055 514 -TEDQVMQFVTSQL 526 (526)
Q Consensus 514 -~~~~l~~~l~~~l 526 (526)
..++|+++|+++|
T Consensus 485 ~~~~~l~~~l~~~L 498 (529)
T 2v7b_A 485 ILAEELKAFVKDRL 498 (529)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHhhc
Confidence 2467999998875
No 23
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=2.7e-73 Score=586.73 Aligned_cols=444 Identities=24% Similarity=0.352 Sum_probs=373.6
Q ss_pred CChhhhhcccCCCCCCCCCceEEEeCCCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHHHHHHHHHc
Q 041055 48 LDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSL 127 (526)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~ 127 (526)
.++.+.+... ++..++ |++|+++. ++++||+||.+++.++|.+|. .|++|+++++|++++++++|||+++
T Consensus 22 ~tl~~~l~~~-a~~~p~-d~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~------~~~~V~i~~~~~~~~~~~~la~~~~ 91 (505)
T 3nyq_A 22 SSLFPALSPA-PTGAPA-DRPALRFG--ERSLTYAELAAAAGATAGRIG------GAGRVAVWATPAMETGVAVVAALLA 91 (505)
T ss_dssp --CCTTTSSC-CCSGGG-GSEEEEET--TEEEEHHHHHHHHHHHHTTCC---------CEEEECCSSHHHHHHHHHHHHH
T ss_pred chhHHHHHHH-HHhCCC-CCeEEEEC--CeeeeHHHHHHHHHHHHhhcc------CCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 4677777777 555552 59999984 689999999999999998774 3889999999999999999999999
Q ss_pred CCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhHHHhhcCCCCEEEEcCCCCCCCcchHHHHhhhcCCCCCCCCCCCCC
Q 041055 128 GAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEELIECCDAADELPGCQLTQ 207 (526)
Q Consensus 128 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (526)
|++++|++|.++.+++.+++++++++++|++.+..........+.+.++.. .....+.....+
T Consensus 92 Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~ 154 (505)
T 3nyq_A 92 GVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDVR-----------------ARGAVPEDGADD 154 (505)
T ss_dssp TCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGTTSEEEECCTT-----------------CCCCCCCCCCCT
T ss_pred CCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhccccccccccc-----------------cccCCCCCCCCC
Confidence 999999999999999999999999999999865211100112222222110 001112224567
Q ss_pred CCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhhcccCCCCcEEEEeCChhHHHHHHHHHHhhcccCcEEEEecCCC
Q 041055 208 DDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFD 287 (526)
Q Consensus 208 ~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~ 287 (526)
+++++|+|||||||.||||+++|+++.+.+......++ ..++|+++..+|++|.+|+...++.++..|+++++.+.++
T Consensus 155 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~ 232 (505)
T 3nyq_A 155 GDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ--WTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFS 232 (505)
T ss_dssp TSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHT--CCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCC
T ss_pred CCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhC--CCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCC
Confidence 89999999999999999999999999998888777776 6789999999999999998777889999999999999999
Q ss_pred HHHHHHHHHhcCccEeecccHHHHHHHhhc----cCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCceeecccccccc
Q 041055 288 LQAMIEAIKTYQVNNIPLVPPVILGLVKYC----KDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESC 363 (526)
Q Consensus 288 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~l~~~yG~tE~~ 363 (526)
+..+++.+ ++++|+++++|+++..+++.. .....++++|.+++||+++++++.+++.+.+ ++++++.||+||++
T Consensus 233 ~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~ 310 (505)
T 3nyq_A 233 TEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTETL 310 (505)
T ss_dssp HHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTTE
T ss_pred hHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhhcc
Confidence 99999999 889999999999999998742 1234577899999999999999999999998 78999999999998
Q ss_pred ceeecccCcccccCCCCcccccCCCcEEEEEeCCCCccCCC---CCcceEEEeccccccccCCCHHHHhcccCCCCeeec
Q 041055 364 GATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPP---YQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKT 440 (526)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~---g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~~T 440 (526)
..++..... ....+++|+|+++++++|+| +++++++. |+.|||+|+|++++.|||++|+.|.++|..+|||+|
T Consensus 311 ~~~~~~~~~---~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~T 386 (505)
T 3nyq_A 311 MNTSVRADG---EPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRT 386 (505)
T ss_dssp EEEECCTTS---CCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEE
T ss_pred cccccCCCC---CCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCcc
Confidence 766543322 22368999999999999999 56777776 899999999999999999999999999999999999
Q ss_pred cceEEEcCCCcEEEEccc-cceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCC-CCCCCHHHH
Q 041055 441 GDLCYFDGEGFLYIVDRI-KELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAA-GSQLTEDQV 518 (526)
Q Consensus 441 GD~~~~~~~G~l~~~GR~-~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~-~~~~~~~~l 518 (526)
||+|++++||.++++||+ |++||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++|+|++.+ +...+.++|
T Consensus 387 GDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l 466 (505)
T 3nyq_A 387 GDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTL 466 (505)
T ss_dssp EEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHH
T ss_pred CCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHH
Confidence 999999999999999998 589999999999999999999999999999999999999999999999986 456778999
Q ss_pred HHHHHhcC
Q 041055 519 MQFVTSQL 526 (526)
Q Consensus 519 ~~~l~~~l 526 (526)
+++|+++|
T Consensus 467 ~~~l~~~L 474 (505)
T 3nyq_A 467 ADHVAARL 474 (505)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhhC
Confidence 99999876
No 24
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=5.9e-73 Score=588.00 Aligned_cols=458 Identities=20% Similarity=0.243 Sum_probs=375.6
Q ss_pred CChhhhhcccCCCCCCCCCceEEEeCCCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHHHHHHHHHc
Q 041055 48 LDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSL 127 (526)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~ 127 (526)
.|+.+.+... ++..| +++|+++. ++++||+||.++++++|++|.+ +|+++||+|+++++|+++|++++|||+++
T Consensus 4 ~~l~~~l~~~-a~~~p--~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~~~~~~~lA~~~~ 77 (521)
T 3l8c_A 4 KDMIDSIEQF-AQTQA--DFPVYDCL--GERRTYGQLKRDSDSIAAFIDS-LALLAKSPVLVFGAQTYDMLATFVALTKS 77 (521)
T ss_dssp CCHHHHHHHH-HHHST--TSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TCCCTTCCEEEEECSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-HHHCC--CCcceecC--CCeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 4677877777 66677 79999984 7899999999999999999998 99999999999999999999999999999
Q ss_pred CCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhHHHhhcCCCCEEEEcCCCCCCCcchHHHHhhhcCCCCCCCCCCCCC
Q 041055 128 GAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEELIECCDAADELPGCQLTQ 207 (526)
Q Consensus 128 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (526)
|++++|+++.++.+++.+++++++++++|++.+....+. ....+.. ..+........ ...+.....+
T Consensus 78 G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--~~~~~~~---------~~~~~~~~~~~--~~~~~~~~~~ 144 (521)
T 3l8c_A 78 GHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--GISLVSL---------SEIESAKLAEM--PYERTHSVKG 144 (521)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--TSEEEEH---------HHHHHHHHHTC--CCCCSSCCCT
T ss_pred CCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--cCcccch---------hhhhhcccccC--CcccCCCCCC
Confidence 999999999999999999999999999999876432221 1111111 01111111111 1112225678
Q ss_pred CCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhhcccCCCCcEEEEeCChhHHHHHHHHHHhhcccCcEEEEecCC-
Q 041055 208 DDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRF- 286 (526)
Q Consensus 208 ~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~- 286 (526)
+++++|+|||||||.||||+++|+++.+..........+...++++++...|++|..++ ..++.++..|+++++.+..
T Consensus 145 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~~~~~~~~~ 223 (521)
T 3l8c_A 145 DDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSV-MYWAPTLALGGTLFALPKEL 223 (521)
T ss_dssp TSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGH-HHHHHHHHTTCEEEECCGGG
T ss_pred CCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHH-HHHHHHHhcCCEEEEcCHHH
Confidence 99999999999999999999999999987776655533446789999999999998887 6677889999999998764
Q ss_pred --CHHHHHHHHHhcCccEeecccHHHHHHHhh-ccCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCceeecccccccc
Q 041055 287 --DLQAMIEAIKTYQVNNIPLVPPVILGLVKY-CKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESC 363 (526)
Q Consensus 287 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~l~~~yG~tE~~ 363 (526)
++..+++.++++++|++.++|+++..++.. ......++++|.+++||+++++++.+++.+.++++++++.||+||++
T Consensus 224 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~ 303 (521)
T 3l8c_A 224 VADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEAT 303 (521)
T ss_dssp TTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGS
T ss_pred hhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHh
Confidence 899999999999999999999999988876 34456789999999999999999999999999999999999999998
Q ss_pred ceeecccCccc--ccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceEEEeccccccccCCCHHHHhccc---CCCCee
Q 041055 364 GATTFMVSPKQ--ARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAF---DEDGWL 438 (526)
Q Consensus 364 ~~~~~~~~~~~--~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~---~~~~~~ 438 (526)
..++....... .....+++|+|.++++++|+| ++++++++|+.|||+|+||+++.|||++|+.|++.| +.+|||
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~ 382 (521)
T 3l8c_A 304 VALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAY 382 (521)
T ss_dssp SCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEE
T ss_pred hhhceeecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceee
Confidence 76654332211 112267899999999999999 678899999999999999999999999999999998 567899
Q ss_pred eccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCC-CCceEEEEEEeCCCCCCC---
Q 041055 439 KTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEE-AGQIPMAYVVRAAGSQLT--- 514 (526)
Q Consensus 439 ~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~-~~~~~~a~vv~~~~~~~~--- 514 (526)
+|||+|++|+||++++.||.||+||++|++|+|.|||++|.+||.|.+++|++.+++. .++.++|+|+++++...+
T Consensus 383 ~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~ 462 (521)
T 3l8c_A 383 HTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDR 462 (521)
T ss_dssp EEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSS
T ss_pred eCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcccccccc
Confidence 9999999999999999999999999999999999999999999999999999987654 468999999999875321
Q ss_pred ----HHHHHHHHHhcC
Q 041055 515 ----EDQVMQFVTSQL 526 (526)
Q Consensus 515 ----~~~l~~~l~~~l 526 (526)
.++|+++|+++|
T Consensus 463 ~~~~~~~l~~~l~~~l 478 (521)
T 3l8c_A 463 ELELTKAIKASVKDHM 478 (521)
T ss_dssp HHHHHHHHHHHSGGGS
T ss_pred chhhHHHHHHHHHhhC
Confidence 467899988875
No 25
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=9.9e-72 Score=586.67 Aligned_cols=429 Identities=23% Similarity=0.219 Sum_probs=361.2
Q ss_pred CChhhhhcccCCCCCCCCCceEEEeCCCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHHHHHHHHHc
Q 041055 48 LDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSL 127 (526)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~ 127 (526)
.++++.+.++ ++.+| +++|+++. ++++||+||.++++++|++|.+ +|+++||+|+++++|++++++++|||+++
T Consensus 27 ~tl~~~~~~~-a~~~P--d~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~g~~V~i~~~~s~~~vva~lailka 100 (620)
T 4dg8_A 27 PTVVARFSEM-AALHP--HREAIRDR--FGSVDYRQLLDSAEQLSDYLLE-HYPQPGVCLGVYGEYSRESITCLLAILLS 100 (620)
T ss_dssp CCHHHHHHHH-HHHCT--TSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HCCSSCCEEEEESSSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHH-HHhCC--CCeEEEcC--CCcCcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 5788888887 77777 79999984 6899999999999999999998 89999999999999999999999999999
Q ss_pred CCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhHHHhhcCCCCEEEEcCCCCCCCcchHHHHhhhcCCCCCCCCCCCCC
Q 041055 128 GAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEELIECCDAADELPGCQLTQ 207 (526)
Q Consensus 128 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (526)
|++++|++|.++.+++.++++++++++++++........ ..+.+.... . .............+
T Consensus 101 Ga~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~--~~~~~~~~~------------~---~~~~~~~~~~~~~~ 163 (620)
T 4dg8_A 101 GHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN--GLPCVPVRH------------L---PAAPASVARPCFAA 163 (620)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT--TSCEEEGGG------------C---CCCCCCSSCCCCCT
T ss_pred CCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc--CCceeeecc------------C---CcCCccccCCCCCC
Confidence 999999999999999999999999999997654322111 111111110 0 00001111124468
Q ss_pred CCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhhcccCCCCcEEEEeCChhHHHHHHHHHHhhcccCcEEEEec--C
Q 041055 208 DDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQ--R 285 (526)
Q Consensus 208 ~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~--~ 285 (526)
+++++|+|||||||.||||+++|+++.+.+.. ...+. ..++++++..+|++|..++ ..++.++..|+++++.+ .
T Consensus 164 ~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~--~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~ 239 (620)
T 4dg8_A 164 DQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLA--FAPQMRFLVNSPLSFDAAT-LEIWGALLNGGCCVLNDLGP 239 (620)
T ss_dssp TSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGT--TCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCSSS
T ss_pred CCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhC--CCCCCEEEEECccCHHHHH-HHHHHHHhcCCEEEeCcccc
Confidence 99999999999999999999999999876544 23333 6789999999999999998 66889999999999964 6
Q ss_pred CCHHHHHHHHHhcCccEeecccHHHHHHHhhccCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCceeeccccccccce
Q 041055 286 FDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESCGA 365 (526)
Q Consensus 286 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~ 365 (526)
+++..+++.++++++|+++++|+++..|++. ....++++|.+++||+++++++.+++.+.++++++++.||+||++.+
T Consensus 240 ~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~--~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~ 317 (620)
T 4dg8_A 240 LDPGVLRQLIGERGADSAWLTASLFNTLVDL--DPDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTF 317 (620)
T ss_dssp CCHHHHHHHHHTTCCCEEEEEHHHHHHHHHH--CGGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSC
T ss_pred CCHHHHHHHHHHhCCcEEEccHHHHHHHHhc--ChhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhh
Confidence 8999999999999999999999999999875 23467899999999999999999999999889999999999999876
Q ss_pred eecccC-cccccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceEEEeccccccccCCCHHHHhcccCCC-------Ce
Q 041055 366 TTFMVS-PKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDED-------GW 437 (526)
Q Consensus 366 ~~~~~~-~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~-------~~ 437 (526)
++.... .........++|+|+++++++|+|+++...+++|+.|||+|+|+++++||+++|+.|+++|..+ +|
T Consensus 318 ~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~ 397 (620)
T 4dg8_A 318 TCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRA 397 (620)
T ss_dssp SEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEE
T ss_pred eEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceE
Confidence 654322 2222233679999999999999996555458999999999999999999999999999999543 79
Q ss_pred eeccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEE
Q 041055 438 LKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYV 505 (526)
Q Consensus 438 ~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~v 505 (526)
|+|||+|++++||+++|+||.||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.+++++
T Consensus 398 yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~ 465 (620)
T 4dg8_A 398 YRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWT 465 (620)
T ss_dssp EEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEE
T ss_pred EeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999998875445544444
No 26
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.1e-71 Score=573.50 Aligned_cols=450 Identities=23% Similarity=0.358 Sum_probs=370.0
Q ss_pred ChhhhhcccCCCCCCCCCceEEEeCCCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHHHHHHHHHcC
Q 041055 49 DTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLG 128 (526)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G 128 (526)
|+.+++..+ ++.+| +++|+++. ++++||+||.+++.++|++|.+ + +||+|+++++|++++++++|||+++|
T Consensus 2 tl~~~l~~~-a~~~p--d~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~---~gd~V~i~~~n~~e~~~~~lA~~~~G 72 (501)
T 3ipl_A 2 SLDFWLYKQ-AQQNG--HHIAITDG--QESYTYQNLYCEASLLAKRLKA-Y---QQSRVGLYIDNSIQSIILIHACWLAN 72 (501)
T ss_dssp -CCCHHHHH-HHHHT--TSEEEECS--SCEEEHHHHHHHHHHHHHHHHT-T---CCSEEEEECCSSHHHHHHHHHHHHTT
T ss_pred CHHHHHHHH-HHhcC--CceEEEeC--CcEEEHHHHHHHHHHHHHHHHH-c---CCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 566777777 66667 79999984 6899999999999999999987 4 89999999999999999999999999
Q ss_pred CEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhHHHhhcC----CCCEEEEcCC--C--CCCCcchHH----HHhhhcCC
Q 041055 129 AILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKV----NVPIIVTSRD--Q--SNNKSVSVE----ELIECCDA 196 (526)
Q Consensus 129 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~i~~~~~--~--~~~~~~~~~----~~~~~~~~ 196 (526)
++++|+++.++.+++.+++++++++++|++.+........ ....+..... . .......+. ........
T Consensus 73 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (501)
T 3ipl_A 73 IEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESP 152 (501)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------CCH
T ss_pred CEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccCCc
Confidence 9999999999999999999999999999987654332110 1100000000 0 000000000 00000000
Q ss_pred CCCCCCCCCCCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhhcccCCCCcEEEEeCChhHHHHHHHHHHhhccc
Q 041055 197 ADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCC 276 (526)
Q Consensus 197 ~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~ 276 (526)
...+.....++++++|+|||||||.||+|+++|+++.+.+......++ +.+++++++.+|++|.+|+ ..++.++..
T Consensus 153 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~--~~~~d~~l~~~p~~~~~g~-~~~~~~l~~ 228 (501)
T 3ipl_A 153 -SNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLG--FDRDTNWLSVLPIYHISGL-SVLLRAVIE 228 (501)
T ss_dssp -HHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTC--CCTTCEEEECSCTTSHHHH-HHHHHHHHH
T ss_pred -ccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhC--CCccCEEEEeCcHHHHHHH-HHHHHHHHc
Confidence 001112457899999999999999999999999999998888777766 6789999999999999999 557889999
Q ss_pred CcEEEEecCCCHHHHHHHHHhcCccEeecccHHHHHHHhhccCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCceeec
Q 041055 277 GVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQG 356 (526)
Q Consensus 277 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~l~~~ 356 (526)
|+++++.+.++++.+++.++++++|++.++|+++..|++...... .++|.+++||+++++++.+++.+. ++++++.
T Consensus 229 G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~ 304 (501)
T 3ipl_A 229 GFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP--YNLQKILLGGAKLSATMIETALQY--NLPIYNS 304 (501)
T ss_dssp TCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC--TTCCEEEECSSCCCHHHHHHHHHT--TCCEEEE
T ss_pred CceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc--CcccEEEEeCCCCCHHHHHHHHHh--CCCEecc
Confidence 999999999999999999999999999999999999988733222 289999999999999999999884 7899999
Q ss_pred cccccccceeecccCcccccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceEEEeccccccccCCCHHHHhcccCCCC
Q 041055 357 YGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDG 436 (526)
Q Consensus 357 yG~tE~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~ 436 (526)
||+||+++.++....... ....+++|+|+++++++|+|++ +|+.|||+|+|+++++||+++++.|.. | .+|
T Consensus 305 YG~TE~~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g 375 (501)
T 3ipl_A 305 FGMTETCSQFLTATPEML-HARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENG 375 (501)
T ss_dssp EEEGGGTEEEEEECHHHH-HHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETT
T ss_pred ccccccccceeecCcccc-ccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-cCC
Confidence 999999875554332221 2237899999999999999964 466799999999999999999999887 6 689
Q ss_pred eeeccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCCCCCCCHH
Q 041055 437 WLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTED 516 (526)
Q Consensus 437 ~~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~~~~~~ 516 (526)
||+|||+|++++||+++++||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..|+.++++|+.. ...+++
T Consensus 376 ~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~--~~~~~~ 453 (501)
T 3ipl_A 376 YFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDISKA 453 (501)
T ss_dssp EEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES--SCCCHH
T ss_pred ceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC--CCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999964 456789
Q ss_pred HHHHHHHhcC
Q 041055 517 QVMQFVTSQL 526 (526)
Q Consensus 517 ~l~~~l~~~l 526 (526)
+|+++|+++|
T Consensus 454 ~l~~~l~~~L 463 (501)
T 3ipl_A 454 QLIAYLSKHL 463 (501)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHhhC
Confidence 9999999875
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=8.4e-71 Score=580.97 Aligned_cols=457 Identities=22% Similarity=0.286 Sum_probs=381.4
Q ss_pred CChhhhhcccCCCCCCCCCceEEEeC--CCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHHHHHHHH
Q 041055 48 LDTATCVLSRFPHPDLAESRVALIDS--ATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIF 125 (526)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~~~lA~~ 125 (526)
.++.+.+... ++.+| +++|+++. +.++++||+||.++++++|++|.+ +|+++||+|+++++|++++++++|||+
T Consensus 11 ~tl~~~l~~~-a~~~p--~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA~~ 86 (590)
T 3kxw_A 11 QSLVDVVRLR-ALHSP--NKKSCTFLNKELEETMTYEQLDQHAKAIAATLQA-EGAKPGDRVLLLFAPGLPLIQAFLGCL 86 (590)
T ss_dssp SSHHHHHHHH-HHHCT--TSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred ccHHHHHHHH-HHhCC--CCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchhHHHHHHHHH
Confidence 6888988887 77777 79998753 235899999999999999999998 999999999999999999999999999
Q ss_pred HcCCEEccCCCCC---CHHHHHHHHHhcCCeEEEEcchhHHHhhcCC---CC----EEEEcCCCCCCCcchHHHHhhhcC
Q 041055 126 SLGAILSPANSIN---TESEIVKQVRDSGAKLIISASEELQKLTKVN---VP----IIVTSRDQSNNKSVSVEELIECCD 195 (526)
Q Consensus 126 ~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~~----~i~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
++|++++|++|.+ +.+++.++++.+++++++++.+....+.... .+ +.... ........
T Consensus 87 ~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~- 155 (590)
T 3kxw_A 87 YAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIA----------LESIELNR- 155 (590)
T ss_dssp HTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEE----------GGGCCGGG-
T ss_pred HhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceee----------chhccccc-
Confidence 9999999999988 4578999999999999999988766654321 11 11111 11100000
Q ss_pred CCCCCCCCCCCCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhhcccCCCCcEEEEeCChhHHHHHHHHHHhhcc
Q 041055 196 AADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFC 275 (526)
Q Consensus 196 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~ 275 (526)
. ...+.....++++++|+|||||||.||||++||+++.+.+......++ +.+++++++.+|++|.+|+...++.++.
T Consensus 156 ~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~--~~~~d~~l~~~p~~h~~g~~~~~~~~l~ 232 (590)
T 3kxw_A 156 S-SSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFH--MNDETIIFSWLPPHHDMGLIGCILTPIY 232 (590)
T ss_dssp G-GGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTT--CCTTCEEEECSCTTSHHHHHTTTHHHHH
T ss_pred c-ccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhC--CCCcCeEEEecCCCcchhhHHHHHHHHh
Confidence 0 111222567899999999999999999999999999999888777766 7789999999999999999555888999
Q ss_pred cCcEEEEecCC----CHHHHHHHHHhcCccEeecccHHHHHHHhh----ccCCCCCCCceEEEEecCCCCHHHHHHHHHh
Q 041055 276 CGVTIVVMQRF----DLQAMIEAIKTYQVNNIPLVPPVILGLVKY----CKDSSYLTSLRRVGSGAAPLSKELADEFRAK 347 (526)
Q Consensus 276 ~G~~~v~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~ 347 (526)
.|+++++.+.+ ++..+++.|+++++|++.++|.++..+++. .....+++++|.+++||+++++++.++|.+.
T Consensus 233 ~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~ 312 (590)
T 3kxw_A 233 GGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQA 312 (590)
T ss_dssp HTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHH
T ss_pred cCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHH
Confidence 99999998765 789999999999999999999999988875 2345688999999999999999999999998
Q ss_pred CC-----CCceeeccccccccceeecccCcc------------------------cccCCCCcccccCCCcEEEEEeCCC
Q 041055 348 FP-----WVELRQGYGLTESCGATTFMVSPK------------------------QARARSGSCGALSPTFYAKVVDTET 398 (526)
Q Consensus 348 ~~-----~~~l~~~yG~tE~~~~~~~~~~~~------------------------~~~~~~~~~G~~~~~~~~~ivd~~~ 398 (526)
|+ ++.+++.||+||++.+++...... ......+++|+|.++ ++|+|+++
T Consensus 313 ~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~ 390 (590)
T 3kxw_A 313 FKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDT 390 (590)
T ss_dssp HGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTT
T ss_pred HHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCC
Confidence 73 457999999999998776532110 011124688999998 88999888
Q ss_pred CccCCCCCcceEEEeccccccccCCCHHHHhcccCC------CC--eeeccceEEEcCCCcEEEEccccceEEecCeeeC
Q 041055 399 RLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDE------DG--WLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVA 470 (526)
Q Consensus 399 ~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~------~~--~~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~ 470 (526)
+.++++|+.|||+|+||++++|||++|+.|+++|.. +| ||+|||+|++| ||.|+|+||.||+||++|++|+
T Consensus 391 ~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~ 469 (590)
T 3kxw_A 391 LIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHY 469 (590)
T ss_dssp CCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTH
T ss_pred CcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecC
Confidence 999999999999999999999999999999999954 24 99999999999 9999999999999999999999
Q ss_pred hHHHHHHH-hcCCCcc--cEEEEeeeCCCCCceEEEEEEeCCCC--CCCHHHHHHHHHhcC
Q 041055 471 PAELEAVL-LSHPNIL--DAAVIPLEDEEAGQIPMAYVVRAAGS--QLTEDQVMQFVTSQL 526 (526)
Q Consensus 471 ~~eIE~~l-~~~~~v~--~~~vv~~~~~~~~~~~~a~vv~~~~~--~~~~~~l~~~l~~~l 526 (526)
|.|||++| ..+|.|. +|+|++++++. ++.++++++..++. ..+.++++++|+++|
T Consensus 470 p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l 529 (590)
T 3kxw_A 470 PQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELV 529 (590)
T ss_dssp HHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHH
Confidence 99999999 7889998 89999998875 78889999988764 345677888887653
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=5.7e-70 Score=570.58 Aligned_cols=458 Identities=18% Similarity=0.210 Sum_probs=314.5
Q ss_pred CChhhhhcccCCCCCCCCCceEEEeCCC--------CceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHH
Q 041055 48 LDTATCVLSRFPHPDLAESRVALIDSAT--------HERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPS 119 (526)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~ 119 (526)
.|+.+++... ++.+| +++|+++.+. ++++||+||.++++++|++|.+ .|+ +||+|+++++|++++++
T Consensus 20 ~tl~~~l~~~-a~~~p--~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~~~~~ 94 (562)
T 3ite_A 20 VPPSHYIETW-AKTHP--EWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIH-ASL-HGRAIAVSLDRSLIAFA 94 (562)
T ss_dssp CCTTHHHHHH-HHHCT--TSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHH-TTC-SSCEEEEECCSCHHHHH
T ss_pred CCHHHHHHHH-HHHCC--CchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEeCCCHHHHH
Confidence 6888888877 77777 7999986421 2789999999999999999988 899 79999999999999999
Q ss_pred HHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhHHHhhcCCCCEEEEcCCCCCCCcchHHHHhhhcCCCCC
Q 041055 120 ICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEELIECCDAADE 199 (526)
Q Consensus 120 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (526)
++|||+++|++++|+++.++.+++.+++++++++++|++.+....+.......+... ....+.+....... .
T Consensus 95 ~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~--~ 166 (562)
T 3ite_A 95 IIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDT------KNQSFIENLSTQDT--S 166 (562)
T ss_dssp HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEEET------TCHHHHHHHHHSCC--S
T ss_pred HHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCccceeecc------cchhhhhhcccccc--c
Confidence 999999999999999999999999999999999999998765443321111111111 11122222222111 1
Q ss_pred CCCCCCCCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhhc------ccCCCCcEEEEeCChhHHHHHHHHHHhh
Q 041055 200 LPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVD------VTHAQNDIFLCMIPMFHIYGLAFFATGL 273 (526)
Q Consensus 200 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~------~~~~~~~~~l~~~p~~~~~g~~~~~~~~ 273 (526)
.......++++++|+|||||||.||||+++|+++.+........+. ..+...++++...|++|..++ ..++.+
T Consensus 167 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 245 (562)
T 3ite_A 167 DILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHI-GEMFLA 245 (562)
T ss_dssp CCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHH-HHHHHH
T ss_pred ccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhH-HHHHHH
Confidence 1112445788999999999999999999999999887766443321 235678899999999888777 567778
Q ss_pred cccCcEEEEecCCC-HHHHHHHHHhcCccEeecccHHHHHHHhhccCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCc
Q 041055 274 FCCGVTIVVMQRFD-LQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVE 352 (526)
Q Consensus 274 l~~G~~~v~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~ 352 (526)
+..|+++++.+.+. ++.+++.++++++|++.++|+++..+.. ...+++++|.+++||+++++++.++|++.+ ++.
T Consensus 246 l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~---~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-~~~ 321 (562)
T 3ite_A 246 WRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL---VPEDAPHLVYLGVGGEKMTPRTQQIWSSSD-RVA 321 (562)
T ss_dssp HHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC---CGGGSTTCCEEEEESSCCCHHHHHHHTTCS-SCE
T ss_pred HhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc---CccccCceEEEEEecCCCCHHHHHHHhhCC-CcE
Confidence 88999999886543 5778899999999999999998887754 345688999999999999999999999876 789
Q ss_pred eeeccccccccceeecccCcccccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceEEEeccccccccCCCHHHHhccc
Q 041055 353 LRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAF 432 (526)
Q Consensus 353 l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~ 432 (526)
+++.||+||++..++....... ...+++|+|+++++++|+|++++.++++|+.|||+|+||++++|||++|+.|...+
T Consensus 322 ~~~~YG~TE~~~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~ 399 (562)
T 3ite_A 322 LVNVYGPTEVTIGCSAGRILPD--SDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCD 399 (562)
T ss_dssp EEEEECCGGGCSCSEEEECCTT--SCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEE
T ss_pred EEEeeccchheeeeeeeeecCC--CCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCcccccccc
Confidence 9999999999876665433222 22678999999999999998889999999999999999999999999999988776
Q ss_pred CCCC--eeeccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhcC-CCcccEEEEeeeCCCCCceEEEEEEeCC
Q 041055 433 DEDG--WLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSH-PNILDAAVIPLEDEEAGQIPMAYVVRAA 509 (526)
Q Consensus 433 ~~~~--~~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~-~~v~~~~vv~~~~~~~~~~~~a~vv~~~ 509 (526)
.+| ||+|||+|++|+||+++|+||.||+||++|++|+|.|||++|.++ |.+.+++|++.+++..++..+++++..+
T Consensus 400 -~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~ 478 (562)
T 3ite_A 400 -INGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASS 478 (562)
T ss_dssp -ETTEEEEEEEEEEEECTTSCEEEEEEC----------------------------------------------------
T ss_pred -CCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecc
Confidence 344 999999999999999999999999999999999999999999998 8899999999998888877777766655
Q ss_pred CCCCC-------------HHHHHHHHHhcC
Q 041055 510 GSQLT-------------EDQVMQFVTSQL 526 (526)
Q Consensus 510 ~~~~~-------------~~~l~~~l~~~l 526 (526)
+.... .++|+++|+++|
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L 508 (562)
T 3ite_A 479 GAAVRGELRWINENYKEINNSLRQACEQTL 508 (562)
T ss_dssp ------------------------------
T ss_pred cccccccccccccchhhHHHHHHHHHHhhC
Confidence 43332 247899888875
No 29
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.4e-68 Score=607.87 Aligned_cols=451 Identities=22% Similarity=0.241 Sum_probs=382.0
Q ss_pred CChhhhhcccCCCCCCCCCceEEEeCCCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHHHHHHHHHc
Q 041055 48 LDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSL 127 (526)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~ 127 (526)
.++++++..+ +++.| +++|+++. ++++||+||.++++++|++|.+ .|+++|++|+|+++|++++++++|||+++
T Consensus 464 ~~l~~~~~~~-~~~~p--~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~g~~V~i~~~~s~~~vv~~lailka 537 (1304)
T 2vsq_A 464 KPLTYWFKEA-VNANP--DAPALTYS--GQTLSYRELDEEANRIARRLQK-HGAGKGSVVALYTKRSLELVIGILGVLKA 537 (1304)
T ss_dssp CCHHHHHHHH-HHHCT--TSEEEESS--SCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEECCCSSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHH-HHhCC--CCeEEEEC--CeeEcHHHHHHHHHHHHHHHHh-cCcCCcCEEEEEeCCCHHHHHHHHHHHHH
Confidence 5688888777 66777 79999974 6899999999999999999998 99999999999999999999999999999
Q ss_pred CCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhHHHhhcCC--CCEEEEcCCCCCCCcchHHHHhhhcCCCCCCCCCCC
Q 041055 128 GAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVN--VPIIVTSRDQSNNKSVSVEELIECCDAADELPGCQL 205 (526)
Q Consensus 128 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (526)
|++++|++|.++.+++.++++++++++++++.+....+.... ...+.++.. . .. . .. ...+....
T Consensus 538 G~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~------~---~~-~--~~-~~~~~~~~ 604 (1304)
T 2vsq_A 538 GAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQ------T---RF-E--EQ-ASDPATAI 604 (1304)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCG------G---GG-G--SC-SSCCCCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccc------c---cc-c--cc-cCCCCCCC
Confidence 999999999999999999999999999999876544432111 112222110 0 00 0 01 11122245
Q ss_pred CCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhhcccCCCCcEEEEeCChhHHHHHHHHHHhhcccCcEEEEecC
Q 041055 206 TQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQR 285 (526)
Q Consensus 206 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~ 285 (526)
.+++++||+|||||||+||||+++|+++.+. ......+ .+.++++++...|++|..+. ..++.++..|+++++.+.
T Consensus 605 ~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~--~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~~~~~ 680 (1304)
T 2vsq_A 605 DPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM--AFSDQDTFLSVSNYAFDAFT-FDFYASMLNAARLIIADE 680 (1304)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS--CCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCG
T ss_pred CCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc--CCCCCCEEEEECCccHHHHH-HHHHHHHHcCCEEEECCh
Confidence 7899999999999999999999999999865 2222333 36789999999999888776 678899999999999864
Q ss_pred ---CCHHHHHHHHHhcCccEeecccHHHHHHHhhccCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCceeeccccccc
Q 041055 286 ---FDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTES 362 (526)
Q Consensus 286 ---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~l~~~yG~tE~ 362 (526)
+++..+++.|+++++|+++++|+++..+.+.. ...++++|.+++|||++++++.++|.+.++++++++.||+||+
T Consensus 681 ~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~ 758 (1304)
T 2vsq_A 681 HTLLDTERLTDLILQENVNVMFATTALFNLLTDAG--EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEG 758 (1304)
T ss_dssp GGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC--SHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGG
T ss_pred hhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc--hhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHH
Confidence 68999999999999999999999999998652 2336789999999999999999999999888899999999999
Q ss_pred cceeecccCcc-cccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceEEEeccccccccCCCHHHHhcccC------CC
Q 041055 363 CGATTFMVSPK-QARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFD------ED 435 (526)
Q Consensus 363 ~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~------~~ 435 (526)
+..++...... .......++|+|++|++++|+| +.++++|.|+.|||+|+|+++++||+++|+.|+++|. ++
T Consensus 759 ~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~ 837 (1304)
T 2vsq_A 759 TVFATAHVVHDLPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGE 837 (1304)
T ss_dssp SSCSEEEECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTC
T ss_pred hHHheeeeccCccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCC
Confidence 88766543221 1112257899999999999999 5688999999999999999999999999999999984 34
Q ss_pred CeeeccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCCCCCCCH
Q 041055 436 GWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTE 515 (526)
Q Consensus 436 ~~~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~~~~~ 515 (526)
+||+|||+|++++||.++|+||.||+||++|++|+|.|||++|.+||+|.+|+|++.++...++.++|||+..+ ..+.
T Consensus 838 ~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~--~~~~ 915 (1304)
T 2vsq_A 838 TLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT--QLSA 915 (1304)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS--SSCH
T ss_pred eeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC--CCCH
Confidence 59999999999999999999999999999999999999999999999999999999998888899999999764 5677
Q ss_pred HHHHHHHHhcC
Q 041055 516 DQVMQFVTSQL 526 (526)
Q Consensus 516 ~~l~~~l~~~l 526 (526)
++++++|+++|
T Consensus 916 ~~l~~~l~~~L 926 (1304)
T 2vsq_A 916 EDVKAHLKKQL 926 (1304)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhC
Confidence 89999999875
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.2e-68 Score=563.26 Aligned_cols=455 Identities=20% Similarity=0.287 Sum_probs=372.8
Q ss_pred CChhhhhcccCCCCCCCCCceEEEeCC-CCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHHHHHHHHH
Q 041055 48 LDTATCVLSRFPHPDLAESRVALIDSA-THERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFS 126 (526)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~ 126 (526)
.++.+.+..+ ++.+| +.+++.+.. .++++||+||.++++++|++|.+ +|+++||+|+++++|++++++++|||++
T Consensus 21 ~tl~~~l~~~-a~~~p--~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 96 (576)
T 3gqw_A 21 PTLVDALDYA-ALSSA--GMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLS-LNLKKGDRVALIAETSSEFVEAFFACQY 96 (576)
T ss_dssp SSHHHHHHHH-TTSSC--EEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHH-TCCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHH-hhCCC--CeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 5789988888 66666 566665422 34789999999999999999998 9999999999999999999999999999
Q ss_pred cCCEEccCCCCCC-------HHHHHHHHHhcCCeEEEEcchhHHHhhcC--CCC-EEEEcCCCCCCCcchHHHHhhhcCC
Q 041055 127 LGAILSPANSINT-------ESEIVKQVRDSGAKLIISASEELQKLTKV--NVP-IIVTSRDQSNNKSVSVEELIECCDA 196 (526)
Q Consensus 127 ~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~--~~~-~i~~~~~~~~~~~~~~~~~~~~~~~ 196 (526)
+|++++|+++.++ .+++.++++++++++++++.+....+... ..+ ...... .+. ... .
T Consensus 97 ~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~~~-~ 164 (576)
T 3gqw_A 97 AGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSH--------AWF---KAL-P 164 (576)
T ss_dssp TTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEEEH--------HHH---HTS-C
T ss_pred hCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceecch--------hhh---hcc-c
Confidence 9999999999998 89999999999999999998866554321 111 111100 011 110 1
Q ss_pred CCCCCCCCCCCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhh-hcccCCCCcEEEEeCChhHHHHHHHHHHhhcc
Q 041055 197 ADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWT-VDVTHAQNDIFLCMIPMFHIYGLAFFATGLFC 275 (526)
Q Consensus 197 ~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~-~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~ 275 (526)
....+.....++++++|+|||||||.||||+++|+++.+.+...... +. +.++|++++.+|++|.+|+...++.++.
T Consensus 165 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~--~~~~d~~l~~~p~~h~~g~~~~~~~~l~ 242 (576)
T 3gqw_A 165 EADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIK--LRPGDRCVSWLPFYHDMGLVGFLLTPVA 242 (576)
T ss_dssp CCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSC--CCTTCCEEECCCTTSHHHHHHHTHHHHH
T ss_pred ccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccC--CCCcceEEEcCCccccccHHHHHHHHHh
Confidence 11112224568999999999999999999999999999887765443 34 7789999999999999999667788889
Q ss_pred cCcEEEEecC----CCHHHHHHHHHhcCccEeecccHHHHHHHhh----ccCCCCCCCceEEEEecCCCCHHHHHHHHHh
Q 041055 276 CGVTIVVMQR----FDLQAMIEAIKTYQVNNIPLVPPVILGLVKY----CKDSSYLTSLRRVGSGAAPLSKELADEFRAK 347 (526)
Q Consensus 276 ~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~ 347 (526)
.|+++++... +++..+++.++++++|+++++|+++..+.+. .....+++++|.+++||+++++++.++|.+.
T Consensus 243 ~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~ 322 (576)
T 3gqw_A 243 TQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAEC 322 (576)
T ss_dssp TTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHHHHH
T ss_pred cCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHHHHHHH
Confidence 9999988764 5888999999999999999999999887665 2346678999999999999999999999998
Q ss_pred CC-----CCceeeccccccccceeecccCcccc----------------c---------CCCCcccccCCCcEEEEEeCC
Q 041055 348 FP-----WVELRQGYGLTESCGATTFMVSPKQA----------------R---------ARSGSCGALSPTFYAKVVDTE 397 (526)
Q Consensus 348 ~~-----~~~l~~~yG~tE~~~~~~~~~~~~~~----------------~---------~~~~~~G~~~~~~~~~ivd~~ 397 (526)
++ ++.+++.||+||++..++........ . ....++|+|+++++++|+| +
T Consensus 323 ~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~ 401 (576)
T 3gqw_A 323 FRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-E 401 (576)
T ss_dssp HGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-T
T ss_pred HhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-C
Confidence 75 67899999999999877654321100 0 0012799999999999999 7
Q ss_pred CCccCCCCCcceEEEeccccccccCCCHHHHhcccCCCCeeeccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHH
Q 041055 398 TRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAV 477 (526)
Q Consensus 398 ~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~ 477 (526)
+++++++|+.|||+|+||++++|||++++.+.+.+ .+|||+|||+|++ +||+++++||.||+||++|++|+|.|||++
T Consensus 402 ~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~ 479 (576)
T 3gqw_A 402 AGMPVAERVVGHICISGPSLMSGYFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYI 479 (576)
T ss_dssp TSCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHH
T ss_pred CCCCCCCCCeEEEEEeCccccccccCCcccccccc-CCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHH
Confidence 89999999999999999999999999999888766 7899999999999 699999999999999999999999999999
Q ss_pred HhcCCCcccEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhc
Q 041055 478 LLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQ 525 (526)
Q Consensus 478 l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~l~~~l~~~ 525 (526)
|.+||.|.+++|++..+. ++..+++++...+.....++++++++++
T Consensus 480 l~~~p~V~~~~vv~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 525 (576)
T 3gqw_A 480 AEQEPEIHSGDAIAFVTA--QEKIILQIQCRISDEERRGQLIHALAAR 525 (576)
T ss_dssp HTTSSSCCTTSEEEEECT--TSCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred HHhCcccccccEEEEEcC--CccEEEEEEEecCchhHHHHHHHHHHHH
Confidence 999999999999988776 3445666665555444456777777664
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=3.2e-62 Score=502.83 Aligned_cols=387 Identities=20% Similarity=0.256 Sum_probs=316.4
Q ss_pred CChhhhhcccCCCCCCCCCceEEEeCC-----CC--ceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHHH
Q 041055 48 LDTATCVLSRFPHPDLAESRVALIDSA-----TH--ERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSI 120 (526)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~~~~~-----~~--~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~~ 120 (526)
.++.+.+... ++..| +++|+++.+ ++ +++||+||.++++++|++|.+ +|+ +||+|+++++|+++|+++
T Consensus 24 ~tl~~~l~~~-a~~~p--d~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~e~~~~ 98 (480)
T 3t5a_A 24 RSLPAALRAC-ARLQP--HDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSR-CGS-TGDRVVISAPQGLEYVVA 98 (480)
T ss_dssp CCHHHHHHHH-HHHST--TSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTT-SSC-TTCEEEEECCSSHHHHHH
T ss_pred ccHHHHHHHH-HHhCC--CCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEcCCcHHHHHH
Confidence 6899998888 67777 799998742 22 789999999999999999987 896 999999999999999999
Q ss_pred HHHHHHcCCEEccCCC---CCCHHHHHHHHHhcCCeEEEEcchhHHHhhcCCC-------CEEEEcCCCCCCCcchHHHH
Q 041055 121 CLAIFSLGAILSPANS---INTESEIVKQVRDSGAKLIISASEELQKLTKVNV-------PIIVTSRDQSNNKSVSVEEL 190 (526)
Q Consensus 121 ~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~~~~~~ 190 (526)
+|||+++|++++|+++ .++.+++.+++++++++++|++.+....+..... ..+..... .
T Consensus 99 ~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 167 (480)
T 3t5a_A 99 FLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDL-----------L 167 (480)
T ss_dssp HHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGG-----------S
T ss_pred HHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecc-----------c
Confidence 9999999999999999 7889999999999999999999887766543211 11111110 0
Q ss_pred hhhcCCCCCCCCCCCCCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhhcccCCC------CcEEEEeCChhHHH
Q 041055 191 IECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQ------NDIFLCMIPMFHIY 264 (526)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~ 264 (526)
.. ... ...+.....++++++|+|||||||.||||++||+++.+.+......+. ... ++++++.+|++|.+
T Consensus 168 ~~-~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~--~~~~~~~~~~d~~l~~~pl~h~~ 243 (480)
T 3t5a_A 168 DL-DAP-NGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYF--ADTDGIPPPNSALVSWLPFYHDM 243 (480)
T ss_dssp CT-TCC----CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHC--TTTTTCCCTTEEEEECCCTTSTT
T ss_pred cc-ccc-cCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhc--cccccCCCCCCeEEEeCCCcCcc
Confidence 00 000 111222456789999999999999999999999999988877766665 344 89999999999999
Q ss_pred HHHHHHHhhcccCcEEEEecCC----CHHHHHHHHHhcCccEeecccHHHHHHHhh-----ccCCCCCCCceEEEEecCC
Q 041055 265 GLAFFATGLFCCGVTIVVMQRF----DLQAMIEAIKTYQVNNIPLVPPVILGLVKY-----CKDSSYLTSLRRVGSGAAP 335 (526)
Q Consensus 265 g~~~~~~~~l~~G~~~v~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-----~~~~~~l~~lr~v~~gG~~ 335 (526)
|+...++.++..|+++++.+.. ++..+++.++++++| +..+|+++..++.. .....++++||.+++||++
T Consensus 244 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~ 322 (480)
T 3t5a_A 244 GLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSER 322 (480)
T ss_dssp HHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTT
T ss_pred HHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCc
Confidence 9877788999999999998753 899999999999999 88999999888864 2346788999999999999
Q ss_pred CCHHHHHHHHHhC-----CCCceeeccccccccceeecccCcccc----------------------cCCCCcccccCCC
Q 041055 336 LSKELADEFRAKF-----PWVELRQGYGLTESCGATTFMVSPKQA----------------------RARSGSCGALSPT 388 (526)
Q Consensus 336 l~~~~~~~~~~~~-----~~~~l~~~yG~tE~~~~~~~~~~~~~~----------------------~~~~~~~G~~~~~ 388 (526)
+++++.++|.+.+ +++.+++.||+||++..++........ ....+++|+|++
T Consensus 323 l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~- 401 (480)
T 3t5a_A 323 VQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS- 401 (480)
T ss_dssp CCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-
T ss_pred CCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-
Confidence 9999999999998 456899999999998877654332110 112468999999
Q ss_pred cEEEEEeCCCCccCCCCCcceEEEeccccccccCCCHHHHhcccC-----------CCCeeeccceEEEcCCCcEEEEcc
Q 041055 389 FYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFD-----------EDGWLKTGDLCYFDGEGFLYIVDR 457 (526)
Q Consensus 389 ~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~-----------~~~~~~TGD~~~~~~~G~l~~~GR 457 (526)
++++|+|+++++++++|+.|||+|+||++++|||++|+.|+++|+ .+|||+|||+|+++ ||+|+|+||
T Consensus 402 ~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 402 PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 999999988899999999999999999999999999999999995 56799999999997 999999998
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=4.4e-48 Score=391.93 Aligned_cols=302 Identities=19% Similarity=0.206 Sum_probs=256.2
Q ss_pred CCCC-CCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhh-cccCCCCcEEEEeCChhHHHHHHHHHHhhcccCcEEE
Q 041055 204 QLTQ-DDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTV-DVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIV 281 (526)
Q Consensus 204 ~~~~-~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v 281 (526)
...+ +++++++|||||||.||+|+++|+++.+........+ ..+..++|+++..+|+.|..+....++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 8899999999999999999999999987766553322 2236789999999998766666567788899999999
Q ss_pred EecCCCHHHHHHHHHhcCccEeecccHHHHHHHhh-ccCCC--CCCCceEEEEecCCCCHHHHHHHHHhCCCCceeeccc
Q 041055 282 VMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKY-CKDSS--YLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYG 358 (526)
Q Consensus 282 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~--~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~l~~~yG 358 (526)
+.+.++++.+++.|+++++|+++++|+++..|++. ..... .++++|.+++||+++++++.+++++.| ++++++.||
T Consensus 161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 239 (436)
T 3qov_A 161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFG 239 (436)
T ss_dssp CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecCc
Confidence 99889999999999999999999999999999987 22233 478999999999999999999999999 899999999
Q ss_pred cccccce-eecccCcccccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceEEEeccccccccCCCHHHHhcccCCCCe
Q 041055 359 LTESCGA-TTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGW 437 (526)
Q Consensus 359 ~tE~~~~-~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~ 437 (526)
+||+++. +.... . . ....|.+.+++.++|+|+++++++++|+.|||+|+|+ +.+.| +++|
T Consensus 240 ~TE~~~~~~~~~~-~----~-~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~------------~~~~~-~~~~ 300 (436)
T 3qov_A 240 MTEMNGPGVAFEC-Q----E-QNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL------------DREMM-PLIR 300 (436)
T ss_dssp EGGGTEEEEEEEC-T----T-CSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES------------SCCSS-CCCS
T ss_pred chhhcCCeeEEec-C----C-CCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc------------CcCCc-eEEE
Confidence 9999654 33222 1 1 2347778889999999988999999999999999984 23344 6789
Q ss_pred eeccceEEEcCCC------c---EEEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeC
Q 041055 438 LKTGDLCYFDGEG------F---LYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRA 508 (526)
Q Consensus 438 ~~TGD~~~~~~~G------~---l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~ 508 (526)
|+|||+|+++++| + +++.||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++|+|++.
T Consensus 301 y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~ 380 (436)
T 3qov_A 301 YRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS 380 (436)
T ss_dssp EEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc
Confidence 9999999999998 5 699999999999999999999999999999999999999999888889999999998
Q ss_pred CCCCCC----HHHHHHHHHhcC
Q 041055 509 AGSQLT----EDQVMQFVTSQL 526 (526)
Q Consensus 509 ~~~~~~----~~~l~~~l~~~l 526 (526)
+...+ .++++++++++|
T Consensus 381 -~~~~~~~~~~~~l~~~l~~~l 401 (436)
T 3qov_A 381 -DLSTDNYIELEKIRRDIIRQL 401 (436)
T ss_dssp -TTCCCCHHHHHHHHHHHHHHH
T ss_pred -CccccchhhHHHHHHHHHHHH
Confidence 65554 567777777653
No 33
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=1.1e-48 Score=384.13 Aligned_cols=281 Identities=17% Similarity=0.228 Sum_probs=239.1
Q ss_pred CCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhhcccCCCCcEEEEeCChhHHHHHHHHHHhhcccCcEEEEecCC
Q 041055 207 QDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRF 286 (526)
Q Consensus 207 ~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~ 286 (526)
.+++++|+|||||||.||||++||+++.+.+......++ +.++|++++.+|++|.+|+ ..++.++..|+++++.++.
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~--~~~~d~~l~~~pl~h~~gl-~~~~~~l~~g~~~~~~~~~ 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALS--LGPGTRALVCLNVGYIAGL-MMLVRGMELDWELTVTEPT 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTT--CCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEEECCC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhC--CCCCCEEEEECChHHHHHH-HHHHHHHHhCcEEEecCcc
Confidence 368999999999999999999999999998888877776 7789999999999999998 5667788888888887542
Q ss_pred CHHHHHHHHHhcCccEeecccHHHHHHHhhccCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCceeecccccccccee
Q 041055 287 DLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESCGAT 366 (526)
Q Consensus 287 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~ 366 (526)
...++.++++++|++.++|+++..|++......+++++|.+++||+++++++.+++++. ++++++.||+||++..+
T Consensus 113 --~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~ 188 (358)
T 4gs5_A 113 --ANPLAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHV 188 (358)
T ss_dssp --SCTTTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEE
T ss_pred --ccHHHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcccCCCchheeccccc--CceEEecccccccccee
Confidence 23467788999999999999999999886667789999999999999999999999875 78999999999998877
Q ss_pred ecccCcccccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceEEEeccccccccCCCHHHHhcccCCCCeeeccceEEE
Q 041055 367 TFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYF 446 (526)
Q Consensus 367 ~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~~TGD~~~~ 446 (526)
+....+.. ..+.+|.+.||+.+.+.+ .|||+++|+.. .+|||+|||+|++
T Consensus 189 ~~~~~~~~---~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~----------------~~g~~~TGDlg~~ 238 (358)
T 4gs5_A 189 ALKALNGP---EASELYVFLPGIQYGVDE-----------RGCLHISGAVT----------------NGQTVQTNDLVEI 238 (358)
T ss_dssp EEEECSST---TCCSCEEECTTCEEEECT-----------TSEEEEESGGG----------------TTCCEEEEEEEEE
T ss_pred eccccccc---ccceeeccCCCeEEEecC-----------cCceEEecccc----------------cCcceecCCcccc
Confidence 66543322 267899999998877633 48999998643 5789999999999
Q ss_pred cCCCcEEEEccccceEEecCeeeChHHHHHHH---hcCCCcccEEEE-eeeCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q 041055 447 DGEGFLYIVDRIKELIKHNGYQVAPAELEAVL---LSHPNILDAAVI-PLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFV 522 (526)
Q Consensus 447 ~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l---~~~~~v~~~~vv-~~~~~~~~~~~~a~vv~~~~~~~~~~~l~~~l 522 (526)
|+|| ++++||.||+||++|++|+|.|||++| .+||.|.+++|+ +.+++..|+.++|+|+...+ ....++|+++|
T Consensus 239 d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~-~~~~~~l~~~l 316 (358)
T 4gs5_A 239 HGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP-EALTERLTAEI 316 (358)
T ss_dssp CSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC-HHHHHHHHHHH
T ss_pred ccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC-CcCHHHHHHHH
Confidence 9988 667799999999999999999999876 468999999887 67888889999999886543 34557899999
Q ss_pred HhcC
Q 041055 523 TSQL 526 (526)
Q Consensus 523 ~~~l 526 (526)
+++|
T Consensus 317 ~~~L 320 (358)
T 4gs5_A 317 RSRV 320 (358)
T ss_dssp HHHS
T ss_pred HhhC
Confidence 9875
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=4.2e-47 Score=384.91 Aligned_cols=303 Identities=21% Similarity=0.219 Sum_probs=252.8
Q ss_pred CCCCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhh-cccCCCCcEEEEeCCh-hHHHHHHHHHHhhcccCcEEE
Q 041055 204 QLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTV-DVTHAQNDIFLCMIPM-FHIYGLAFFATGLFCCGVTIV 281 (526)
Q Consensus 204 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~p~-~~~~g~~~~~~~~l~~G~~~v 281 (526)
...++++++++|||||||.||+|+++|+++..........+ ..+..++|+++..+|+ +|..++ ...+.++..|++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~ 164 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGL-GAHYGAERAGLTVI 164 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHTTCEEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccch-HHHHHHHHcCCEEE
Confidence 34668899999999999999999999999887665443221 1236789999999998 677776 55778889999999
Q ss_pred EecCCCHHHHHHHHHhcCccEeecccHHHHHHHhhc-cCCCC--CCCceEEEEecCCCCHHHHHHHHHhCCCCceeeccc
Q 041055 282 VMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYC-KDSSY--LTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYG 358 (526)
Q Consensus 282 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~--l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~l~~~yG 358 (526)
+.+.++++.+++.|+++++|+++++|+++..|++.. ....+ ++++|.+++||+++++++.+++++.| ++++++.||
T Consensus 165 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 243 (437)
T 2y27_A 165 PFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYG 243 (437)
T ss_dssp CCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred eCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCC
Confidence 888889999999999999999999999999998862 22333 58999999999999999999999998 799999999
Q ss_pred cccccce-eecccCcccccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceEEEeccccccccCCCHHHHhcccCCCCe
Q 041055 359 LTESCGA-TTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGW 437 (526)
Q Consensus 359 ~tE~~~~-~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~ 437 (526)
+||+++. +...... . ....+.+.+++.++|+|+++++++++|+.|||+|+|. +.+.| +++|
T Consensus 244 ~TE~~g~~~~~~~~~----~-~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------------t~~~~-~~~~ 305 (437)
T 2y27_A 244 LSEVMGPGVASECVE----T-KDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL------------TKEAL-PIIR 305 (437)
T ss_dssp ETTTTEEEEEECCTT----T-CSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCCS
T ss_pred chhhcCCeeEEecCC----C-CCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC------------CcCCc-hhhe
Confidence 9998443 3332211 1 1136667899999999988899999999999999983 33445 6789
Q ss_pred eeccceEEEcC-CCcE-----EEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCCCC
Q 041055 438 LKTGDLCYFDG-EGFL-----YIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGS 511 (526)
Q Consensus 438 ~~TGD~~~~~~-~G~l-----~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~ 511 (526)
|+|||+|++++ +|++ ++.||.||+||++|++|+|.|||++|.+||+|.+++|++++++..++.++|+|++.++.
T Consensus 306 y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~ 385 (437)
T 2y27_A 306 YRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPET 385 (437)
T ss_dssp EEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTT
T ss_pred eecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCc
Confidence 99999999999 6985 89999999999999999999999999999999999999998877789999999988765
Q ss_pred C---CCHHHHHHHHHhcC
Q 041055 512 Q---LTEDQVMQFVTSQL 526 (526)
Q Consensus 512 ~---~~~~~l~~~l~~~l 526 (526)
. .+.++++++|+++|
T Consensus 386 ~~~~~~~~~l~~~l~~~l 403 (437)
T 2y27_A 386 APDTAAIQVAKQALAYDI 403 (437)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHH
Confidence 4 34467888877653
No 35
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=8.4e-47 Score=383.35 Aligned_cols=303 Identities=19% Similarity=0.212 Sum_probs=251.4
Q ss_pred CCCCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhh-cccCCCCcEEEEeCCh-hHHHHHHHHHHhhcccCcEEE
Q 041055 204 QLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTV-DVTHAQNDIFLCMIPM-FHIYGLAFFATGLFCCGVTIV 281 (526)
Q Consensus 204 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~p~-~~~~g~~~~~~~~l~~G~~~v 281 (526)
...++++++++|||||||.||+|+++|+++..........+ ..+..++|+++..+|+ +|..++ ...+.++..|++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~~ 166 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMVV 166 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHH-HHHHHHHHcCCEEE
Confidence 34678899999999999999999999999887655443311 2236789999999998 566666 56778888999999
Q ss_pred EecCCCHHHHHHHHHhcCccEeecccHHHHHHHhhc-cCCC--CCCCceEEEEecCCCCHHHHHHHHHhCCCCceeeccc
Q 041055 282 VMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYC-KDSS--YLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYG 358 (526)
Q Consensus 282 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~--~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~l~~~yG 358 (526)
+.+.++++.+++.|+++++|++.++|+++..|++.. .... .++++|.+++||+++++++.+++++.| ++++++.||
T Consensus 167 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 245 (443)
T 2y4o_A 167 PMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYG 245 (443)
T ss_dssp CCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEE
T ss_pred ECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccC
Confidence 998889999999999999999999999999998862 2233 358999999999999999999999998 799999999
Q ss_pred cccccce-eecccCcccccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceEEEeccccccccCCCHHHHhcccCCCCe
Q 041055 359 LTESCGA-TTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGW 437 (526)
Q Consensus 359 ~tE~~~~-~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~ 437 (526)
+||+++. +...... . ....+.+.+++.++|+|+++++++++|+.|||+|+|. +.+.| +++|
T Consensus 246 ~TE~~g~~~~~~~~~----~-~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~------------t~~~~-p~~~ 307 (443)
T 2y4o_A 246 LSEVMGPGVACECVE----T-KDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL------------TKEAM-PVIR 307 (443)
T ss_dssp ETTTTEEEEEEECTT----T-CCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCSS
T ss_pred chhhcCCeEEeccCC----C-CCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC------------CcccC-hhhe
Confidence 9998543 3322211 1 1125667789999999988899999999999999983 23445 6789
Q ss_pred eeccceEEEcCC-CcE-----EEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCC--
Q 041055 438 LKTGDLCYFDGE-GFL-----YIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAA-- 509 (526)
Q Consensus 438 ~~TGD~~~~~~~-G~l-----~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~-- 509 (526)
|+|||+|+++++ |++ ++.||.||+||++|++|+|.|||++|.+||+|.+++|++++++..++.++++|++.+
T Consensus 308 y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~ 387 (443)
T 2y4o_A 308 YRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEA 387 (443)
T ss_dssp EEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHH
T ss_pred eecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcc
Confidence 999999999999 987 899999999999999999999999999999999999999988777889999999876
Q ss_pred CC---CCCHHHHHHHHHhcC
Q 041055 510 GS---QLTEDQVMQFVTSQL 526 (526)
Q Consensus 510 ~~---~~~~~~l~~~l~~~l 526 (526)
+. ..+.++++++|+++|
T Consensus 388 ~~~~~~~~~~~l~~~l~~~l 407 (443)
T 2y4o_A 388 AASVTDGERAALARELQHRI 407 (443)
T ss_dssp HTTCCHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHH
Confidence 32 234567888877653
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=100.00 E-value=1.1e-32 Score=272.55 Aligned_cols=238 Identities=20% Similarity=0.155 Sum_probs=182.0
Q ss_pred CCCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhh-cccCCCCcEEEEeCCh-hHHHHHHHHHHhhcccCcEEEE
Q 041055 205 LTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTV-DVTHAQNDIFLCMIPM-FHIYGLAFFATGLFCCGVTIVV 282 (526)
Q Consensus 205 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~p~-~~~~g~~~~~~~~l~~G~~~v~ 282 (526)
..++++++++|||||||.||+|+++|+++..........+ ..+..++|+++..+|+ +|..|+ ...+.++..|+ +++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~-~~~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGA-INKERALRLGG-MFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHH-HHHHHHHHTTS-CEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhH-HHHHHHHHcCC-EEE
Confidence 4678899999999999999999999999998877654322 2246789999999999 999998 44555588888 667
Q ss_pred ecCCCHH-----------------------HHHHHHHhcCccEeecccHHHHHHHhhc-cCCCCCCCceEEEEecCCCCH
Q 041055 283 MQRFDLQ-----------------------AMIEAIKTYQVNNIPLVPPVILGLVKYC-KDSSYLTSLRRVGSGAAPLSK 338 (526)
Q Consensus 283 ~~~~~~~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~l~~lr~v~~gG~~l~~ 338 (526)
...+++. .+++.|+++++|++.++|+++..|++.. .....++++|.+++||+++++
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL 245 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence 7777877 8888999999999999999999998762 223567899999999999999
Q ss_pred HHHHHHH-HhCCCCceeeccccccccceeecccCcccccCCCC-ccccc------CCCcEEEEEeCCCCccCCCCCcceE
Q 041055 339 ELADEFR-AKFPWVELRQGYGLTESCGATTFMVSPKQARARSG-SCGAL------SPTFYAKVVDTETRLALPPYQRGEL 410 (526)
Q Consensus 339 ~~~~~~~-~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~-~~G~~------~~~~~~~ivd~~~~~~~~~g~~Gel 410 (526)
++.++++ +.||++++++.||+||+++++..+ ++ ++|++ .++++++|+|+++++++++|+.|||
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~---------~~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl 316 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSL---------LITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNV 316 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEEC---------CBCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEE
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceecc---------ccccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEE
Confidence 9999999 999899999999999998665322 22 48888 9999999999878999999999999
Q ss_pred EEeccccccccCCCHHHHhcccCCCCeeeccceEEEcCC--C-------cEEEEccccceEEecCe
Q 041055 411 WLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGE--G-------FLYIVDRIKELIKHNGY 467 (526)
Q Consensus 411 ~v~~~~~~~gy~~~~~~t~~~~~~~~~~~TGD~~~~~~~--G-------~l~~~GR~~d~ik~~G~ 467 (526)
+|++..- +.+ -..|+|||++.+.+. | .+..++|.++..|+.|.
T Consensus 317 ~vt~l~~------------~~~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 317 IVTHLSP------------WAF--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEET------------TEE--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEEcCc------------ccc--cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 9997431 111 124899999988653 2 25567777777777774
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.20 E-value=4.2e-11 Score=94.95 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=55.8
Q ss_pred ccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCCCCCCCH
Q 041055 456 DRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTE 515 (526)
Q Consensus 456 GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~~~~~ 515 (526)
.|.|||||++|.+|+|.|||++|.+||+|.++++++++++..++.+.++|+..++...+.
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~ 60 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDY 60 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCH
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecccccc
Confidence 489999999999999999999999999999999999999999999999999998766554
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.17 E-value=4.3e-11 Score=94.74 Aligned_cols=69 Identities=19% Similarity=0.226 Sum_probs=57.4
Q ss_pred ccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCCCCCC----CHHHHHHHHHhc
Q 041055 456 DRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQL----TEDQVMQFVTSQ 525 (526)
Q Consensus 456 GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~~~----~~~~l~~~l~~~ 525 (526)
||.||+|+++|.+|+|.|||++|.+||+|.++++++++++..++.++++|++ ++... +.+++.+.++++
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~ 73 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQ 73 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999988887778999999998 66432 234555555543
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=99.10 E-value=5.3e-10 Score=113.40 Aligned_cols=143 Identities=13% Similarity=0.148 Sum_probs=91.3
Q ss_pred CCC---ceEEEEecCCCCHHHHHHHHHhCCCCcee-eccccccccceeecccCcccccCCCCcccc-cCC-CcEEEEEeC
Q 041055 323 LTS---LRRVGSGAAPLSKELADEFRAKFPWVELR-QGYGLTESCGATTFMVSPKQARARSGSCGA-LSP-TFYAKVVDT 396 (526)
Q Consensus 323 l~~---lr~v~~gG~~l~~~~~~~~~~~~~~~~l~-~~yG~tE~~~~~~~~~~~~~~~~~~~~~G~-~~~-~~~~~ivd~ 396 (526)
.++ +.+++.||- ..-...++..+++.++. ..|++||+. +..+..+... +...+. ++| .+-.+.++.
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~--~gi~~~p~~~---~~~~~~~L~~~~~ffEFip~ 367 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETT--FGINLDPLCK---PEDVSYTFMPNMSYFEFIPM 367 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCE--EEECSCTTSC---GGGCCEEECTTSSEEEEEEC
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccce--eeeccCCCCC---cccCceeecCCcEEEEEEec
Confidence 456 555566663 33345566666677777 999999963 2222211100 112222 223 245567763
Q ss_pred CC--------CccCCCCCcceEEEeccccccccCCCHHHHhcccCCCCeeeccceEEEcC----CCcEEEEccccceEEe
Q 041055 397 ET--------RLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDG----EGFLYIVDRIKELIKH 464 (526)
Q Consensus 397 ~~--------~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~~TGD~~~~~~----~G~l~~~GR~~d~ik~ 464 (526)
+. ...|..|+.+||+|++.+ |.|+ |++||++++.. ..++.|.||.++++.+
T Consensus 368 ~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~ 430 (581)
T 4eql_A 368 DGGDKNDVVDLEDVKLGCTYEPVVTNFA---GLYR--------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI 430 (581)
T ss_dssp STTCCSSCEEGGGCCTTCEEEEEEECSS---SCCS--------------EECCEEEEEEEEETTEEEEEEEEETTEEECS
T ss_pred cccCCCcEeCHHHcCCCceEEEEEeecc---ceee--------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe
Confidence 32 235678999999999752 3332 99999999975 3579999999999999
Q ss_pred cCeeeChHHHHHHHhcCC--------CcccEEEE
Q 041055 465 NGYQVAPAELEAVLLSHP--------NILDAAVI 490 (526)
Q Consensus 465 ~G~~v~~~eIE~~l~~~~--------~v~~~~vv 490 (526)
.|+++++.+||++|.+.- .|.|..+.
T Consensus 431 ~Gekl~~~~v~~al~~a~~~l~~~g~~l~eft~~ 464 (581)
T 4eql_A 431 DSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSY 464 (581)
T ss_dssp SSCCEEHHHHHHHHHHC--------------CEE
T ss_pred eeeECCHHHHHHHHHHHHHhhhhcCCEEEEEEEe
Confidence 999999999999998543 25666654
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=99.08 E-value=5.4e-10 Score=113.46 Aligned_cols=160 Identities=14% Similarity=0.162 Sum_probs=99.6
Q ss_pred CCCce---EEEEecCCCCHHHHHHHHHhCCCCcee-eccccccccceeecccCcccccCCCCcccc-cCCC-cEEEEEeC
Q 041055 323 LTSLR---RVGSGAAPLSKELADEFRAKFPWVELR-QGYGLTESCGATTFMVSPKQARARSGSCGA-LSPT-FYAKVVDT 396 (526)
Q Consensus 323 l~~lr---~v~~gG~~l~~~~~~~~~~~~~~~~l~-~~yG~tE~~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~ivd~ 396 (526)
.+++| +++.||. ..-...++..+++.++. ..|++||+. +..+..+... ++..+. .+|+ .-.+.++.
T Consensus 301 WPnlk~l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~--~gi~~~p~~~---p~~~~~~L~p~~~ffEFIP~ 372 (609)
T 4b2g_A 301 WPNTKYLDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECY--FGLNLNPMSK---PSEVSYTIMPNMAYFEFLPH 372 (609)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCE--EEECSCTTSC---GGGCCEEECTTSCEEEEEEG
T ss_pred CCCCcEEEEEccCCh---HHHHHHHHHHcCCCccccCccccccee--eeeecCCCCC---cccCceeecCCcEEEEEEec
Confidence 46644 5555653 33335555555677777 999999963 2222211100 112221 2332 45566643
Q ss_pred CC---------------CccCCCCCcceEEEeccccccccCCCHHHHhcccCCCCeeeccceEEEcC----CCcEEEEcc
Q 041055 397 ET---------------RLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDG----EGFLYIVDR 457 (526)
Q Consensus 397 ~~---------------~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~~TGD~~~~~~----~G~l~~~GR 457 (526)
++ ...|+.|+.+||+|+... |.|+ |++||++++.. ..++.|.||
T Consensus 373 ~~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~~~gR 435 (609)
T 4b2g_A 373 EHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYA---GLYR--------------YRVGDILRVTGFHNSAPQFHFVRR 435 (609)
T ss_dssp GGTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTT---SCCS--------------EEEEEEEEEEEEETTEEEEEEEEE
T ss_pred cccccccccCCCCccccHhHcCCCCeEEEehhhhh---hhhh--------------eecCCEEEEeecCCCCcEEEEEEe
Confidence 32 236789999999998742 4443 99999999973 467999999
Q ss_pred ccceEEecCeeeChHHHHHHHhcC------C--CcccEEEEeeeCCCCCceEEEEEEeC
Q 041055 458 IKELIKHNGYQVAPAELEAVLLSH------P--NILDAAVIPLEDEEAGQIPMAYVVRA 508 (526)
Q Consensus 458 ~~d~ik~~G~~v~~~eIE~~l~~~------~--~v~~~~vv~~~~~~~~~~~~a~vv~~ 508 (526)
.++++++.|+++++.+||+++.+. . .|.|..+........+ +-+.|+++.
T Consensus 436 ~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p~-Hyv~~wEl~ 493 (609)
T 4b2g_A 436 KNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIPG-HYVIYWELL 493 (609)
T ss_dssp TTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECSSSSC-EEEEEEEEE
T ss_pred cCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCCCCCC-cEEEEEEEe
Confidence 999999999999999999998842 2 3667766532222222 334445554
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.92 E-value=2e-08 Score=101.67 Aligned_cols=161 Identities=13% Similarity=0.095 Sum_probs=99.3
Q ss_pred CCCceEE--EEecCCCCHHHHHHHHHhCCCCcee-eccccccccceeecccCcccccCCCCcccc-cCCC-cEEEEEeCC
Q 041055 323 LTSLRRV--GSGAAPLSKELADEFRAKFPWVELR-QGYGLTESCGATTFMVSPKQARARSGSCGA-LSPT-FYAKVVDTE 397 (526)
Q Consensus 323 l~~lr~v--~~gG~~l~~~~~~~~~~~~~~~~l~-~~yG~tE~~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~ivd~~ 397 (526)
.++++.| +.+|. + ..-...++..+++.++. ..|++||+. +..+..+.. .++..+. ++|+ .-.+.+..+
T Consensus 301 WPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~--~gi~~~p~~---~~~~~~~~L~p~~~ffEFiP~~ 373 (581)
T 4epl_A 301 FPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEGW--IAANVTPRL---SPEEATFAVIPNLGYFEFLPVS 373 (581)
T ss_dssp CTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTEE--EEECCCTTS---CTTTCCEEECTTSCEEEEEEC-
T ss_pred CCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceecccee--eeeecCCCC---CccccceeecCCcEEEEEEecc
Confidence 4677532 33342 2 23335566666677777 999999963 232222111 0222222 3333 344555432
Q ss_pred C----------CccCCCCCcceEEEeccccccccCCCHHHHhcccCCCCeeeccceEEEcCC----CcEEEEccccceEE
Q 041055 398 T----------RLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGE----GFLYIVDRIKELIK 463 (526)
Q Consensus 398 ~----------~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~~TGD~~~~~~~----G~l~~~GR~~d~ik 463 (526)
. ...|+.|+.+||+|++.. |.|. |++||++++..- .++.|.||.+++++
T Consensus 374 ~~~~~~~~~v~l~eve~G~~YelviTt~~---GL~R--------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~ 436 (581)
T 4epl_A 374 ETGEGEEKPVGLTQVKIGEEYEVVITNYA---GLYR--------------YRLGDVVKVIGFYNNTPQLKFICRRNLILS 436 (581)
T ss_dssp ------CCCEEGGGCCTTCEEEEEEESTT---SCSS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBC
T ss_pred cccCCCCceeeHHHcCCCCeEEEEEeecc---ceee--------------EEcCCEEEEecccCCCcEEEEEeecCCeEE
Confidence 2 146789999999999752 3332 999999999642 46999999999999
Q ss_pred ecCeeeChHHHHHHHhcC--------CCcccEEEEeeeCCCCCceEEEEEEeC
Q 041055 464 HNGYQVAPAELEAVLLSH--------PNILDAAVIPLEDEEAGQIPMAYVVRA 508 (526)
Q Consensus 464 ~~G~~v~~~eIE~~l~~~--------~~v~~~~vv~~~~~~~~~~~~a~vv~~ 508 (526)
+.|+++++.+||+++.+. -.|.|..+..... ....+-+.|.+..
T Consensus 437 ~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~-~~p~hyv~~wE~~ 488 (581)
T 4epl_A 437 INIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVS-TDPGHYAIFWEIS 488 (581)
T ss_dssp SSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECS-SSSCEEEEEEEES
T ss_pred eeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCC-CCCCcEEEEEeec
Confidence 999999999999998752 2477777765222 2222334445654
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=91.31 E-value=1.3 Score=43.51 Aligned_cols=86 Identities=17% Similarity=0.167 Sum_probs=69.9
Q ss_pred eeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCC--chHHHHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCeEE
Q 041055 78 RVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSL--LYPSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLI 155 (526)
Q Consensus 78 ~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 155 (526)
.+|.+.+...+..++..+.. .|+.++|++...++-.. ..+...++++..|+.+++++. ...+.+...+++.++.++
T Consensus 109 ~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 186 (437)
T 2y27_A 109 GYTAADIDTWANLVARSIRA-AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDII 186 (437)
T ss_dssp EECHHHHHHHHHHHHHHHHH-TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred ecCHHHHHHHHHHHHHHHHH-cCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEE
Confidence 58999998888877877766 89999999999888643 224456888999999988765 478899999999999999
Q ss_pred EEcchhHHHh
Q 041055 156 ISASEELQKL 165 (526)
Q Consensus 156 i~~~~~~~~~ 165 (526)
+..+..+..+
T Consensus 187 ~~~Ps~~~~l 196 (437)
T 2y27_A 187 MVTPSYMLSI 196 (437)
T ss_dssp EECHHHHHHH
T ss_pred EECHHHHHHH
Confidence 9888776654
No 43
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=90.82 E-value=1.5 Score=43.17 Aligned_cols=86 Identities=20% Similarity=0.186 Sum_probs=70.1
Q ss_pred eeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCC--chHHHHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCeEE
Q 041055 78 RVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSL--LYPSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLI 155 (526)
Q Consensus 78 ~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 155 (526)
.+|.+.+...+..++..+.. .|+.++|++...++-+. ..+...++++..|+.+++++.. ..+.+...+++.++.++
T Consensus 111 ~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 111 GYTARDIDTWANVTARSIRA-AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EECHHHHHHHHHHHHHHHHH-TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred ecCHHHHHHHHHHHHHHHHH-cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEE
Confidence 58999998888888877766 89999999999888643 2345568889999999888764 78899999999999999
Q ss_pred EEcchhHHHh
Q 041055 156 ISASEELQKL 165 (526)
Q Consensus 156 i~~~~~~~~~ 165 (526)
+..+..+..+
T Consensus 189 ~~~Ps~~~~l 198 (443)
T 2y4o_A 189 LVTPSYMLNL 198 (443)
T ss_dssp EECHHHHHHH
T ss_pred EECHHHHHHH
Confidence 9888766554
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=89.60 E-value=1.7 Score=42.60 Aligned_cols=86 Identities=19% Similarity=0.149 Sum_probs=70.0
Q ss_pred eeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCC--chHHHHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCeEE
Q 041055 78 RVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSL--LYPSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLI 155 (526)
Q Consensus 78 ~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 155 (526)
.+|.+.+...+..++..+.. .++.++|++..+.+-+. ..+..+++++..|+.+++.++. ..+.+...+++.++.++
T Consensus 105 ~~th~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 105 VHSQHDLDSWANLVARCLYM-VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEHHHHHHHHHHHHHHHHH-TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCEE
T ss_pred EECHHHHHHHHHHHHHHHHH-cCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCEE
Confidence 58999998888888888876 89999999999887542 2344668889999998887654 77889999999999999
Q ss_pred EEcchhHHHh
Q 041055 156 ISASEELQKL 165 (526)
Q Consensus 156 i~~~~~~~~~ 165 (526)
+..+..+..+
T Consensus 183 ~~~P~~~~~l 192 (436)
T 3qov_A 183 HAIPSYAIRL 192 (436)
T ss_dssp ECCHHHHHHH
T ss_pred EECHHHHHHH
Confidence 9888766654
No 45
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=74.83 E-value=40 Score=29.14 Aligned_cols=92 Identities=18% Similarity=0.170 Sum_probs=56.0
Q ss_pred CcEEEEeCCh-hHHHHHHHHHHhhcccCcEEEEec-CCCHHHHHHHHHhcCccEeec--cc----HH--HHHHHhhccCC
Q 041055 251 NDIFLCMIPM-FHIYGLAFFATGLFCCGVTIVVMQ-RFDLQAMIEAIKTYQVNNIPL--VP----PV--ILGLVKYCKDS 320 (526)
Q Consensus 251 ~~~~l~~~p~-~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~--~P----~~--~~~l~~~~~~~ 320 (526)
+.+++.+.+- .|..|........-..|..++... ...++.+.+.+++++++.+.+ +- +. +..+.+... .
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~-~ 171 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLN-E 171 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHH-H
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHH-H
Confidence 3344444433 677777455555556788887764 578999999999999997777 32 21 222222211 1
Q ss_pred CCC-CCceEEEEecCCCCHHHHHHH
Q 041055 321 SYL-TSLRRVGSGAAPLSKELADEF 344 (526)
Q Consensus 321 ~~l-~~lr~v~~gG~~l~~~~~~~~ 344 (526)
..+ ..++ +++||.+++++..+.+
T Consensus 172 ~~~~~~v~-v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 172 EKLRDSVK-CMFGGAPVSDKWIEEI 195 (215)
T ss_dssp TTCGGGSE-EEEESSSCCHHHHHHH
T ss_pred cCCCCCCE-EEEECCCCCHHHHHHh
Confidence 112 2344 6889999997755443
No 46
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=71.16 E-value=9.2 Score=36.30 Aligned_cols=86 Identities=13% Similarity=0.109 Sum_probs=63.0
Q ss_pred eeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCc--hHHHHHHHHHcCCEEccCCCCCCHH--------------
Q 041055 78 RVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLL--YPSICLAIFSLGAILSPANSINTES-------------- 141 (526)
Q Consensus 78 ~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~-------------- 141 (526)
.+|.+.+...+..++..+.. .|+.++|++..+++-+.. -....++++..|+.+++.. +.+.
T Consensus 110 ~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 110 VAYDAWIEALISWRMSGYQH-RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EECHHHHHHHHHHHTTTTTT-STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHH
T ss_pred EECHHHHHHHHHHHHhhHHh-hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhh
Confidence 57999998888777666655 899999999999887333 2344556688898655543 3444
Q ss_pred ---------HHHHHHHhcCCeEEEEcchhHHHhh
Q 041055 142 ---------EIVKQVRDSGAKLIISASEELQKLT 166 (526)
Q Consensus 142 ---------~l~~~l~~~~~~~ii~~~~~~~~~~ 166 (526)
++...+++.++.+++..+..+..+.
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 220 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL 220 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 6667889999999998887766653
No 47
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=67.07 E-value=22 Score=35.80 Aligned_cols=87 Identities=14% Similarity=0.130 Sum_probs=65.2
Q ss_pred ceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchH--HHHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCeE
Q 041055 77 ERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYP--SICLAIFSLGAILSPANSINTESEIVKQVRDSGAKL 154 (526)
Q Consensus 77 ~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~--~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 154 (526)
-.+|.+.+...+......+.. +++.++|++..+++-.-.+- ..+++.+ .|+..+..+ ...++.+...+++.++.+
T Consensus 210 v~~sh~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 286 (548)
T 2d1s_A 210 VQLTHENIVTRFSHARDPIYG-NQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTS 286 (548)
T ss_dssp EEEEHHHHHHHHHHHTCTTTS-CCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEE
T ss_pred EEecHHHHHHHHHHhhchhhc-cCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcE
Confidence 368999887776665544322 57889999988887765443 2356667 999888775 578899999999999999
Q ss_pred EEEcchhHHHhh
Q 041055 155 IISASEELQKLT 166 (526)
Q Consensus 155 ii~~~~~~~~~~ 166 (526)
++..+..+..+.
T Consensus 287 ~~~~P~~~~~l~ 298 (548)
T 2d1s_A 287 VILVPTLFAILN 298 (548)
T ss_dssp EEECHHHHHHHH
T ss_pred EEecHHHHHHHH
Confidence 999888776654
No 48
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=64.63 E-value=30 Score=34.72 Aligned_cols=100 Identities=11% Similarity=0.047 Sum_probs=71.3
Q ss_pred CCCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhhc-ccCCCCcEEEEeCChhHHHHHHHHHHhhcccCcEEEEe
Q 041055 205 LTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVD-VTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVM 283 (526)
Q Consensus 205 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~-~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 283 (526)
..++.+|++....| -.+|.+.+...+..+...+. .+..++|++...++-.. .+...+++++..|+..+..
T Consensus 34 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~--~~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 34 NHSSKPCLINGANG-------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSP--EFVLAFLGASHRGAIITAA 104 (536)
T ss_dssp GSTTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH--HHHHHHHHHHHHTCEEEEC
T ss_pred cCCCceEEEECCCC-------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH--HHHHHHHHHHHhCCEEecc
Confidence 35677887653322 24788888877766655442 35788999998888643 2335677888899988887
Q ss_pred c-CCCHHHHHHHHHhcCccEeecccHHHHHH
Q 041055 284 Q-RFDLQAMIEAIKTYQVNNIPLVPPVILGL 313 (526)
Q Consensus 284 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 313 (526)
+ ....+.+...++..++..++........+
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 135 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYYEKV 135 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGTHHH
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHHHHH
Confidence 5 57889999999999999998876544433
No 49
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=62.78 E-value=46 Score=32.87 Aligned_cols=84 Identities=14% Similarity=0.119 Sum_probs=65.2
Q ss_pred eeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCch-HHHHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCeEEE
Q 041055 78 RVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLY-PSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLII 156 (526)
Q Consensus 78 ~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 156 (526)
.+|.+.+...+..+.. .+++.++|++..++|-.-.+ +..+++++..|+..+..+ ...++.+...+++.++.+++
T Consensus 182 ~~th~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~ 256 (501)
T 3ipl_A 182 PQTFRNHYASAIGCKE----SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD-KFNAEQILTMIKNERITHIS 256 (501)
T ss_dssp EEEHHHHHHHHHHHHH----HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHSCCCEEE
T ss_pred EEeHHHHHHHHHHHHH----hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHHcCCcEEE
Confidence 5898888776665443 36889999999988875443 334678888999888775 47889999999999999999
Q ss_pred EcchhHHHhh
Q 041055 157 SASEELQKLT 166 (526)
Q Consensus 157 ~~~~~~~~~~ 166 (526)
..+..+..+.
T Consensus 257 ~~P~~~~~l~ 266 (501)
T 3ipl_A 257 LVPQTLNWLM 266 (501)
T ss_dssp ECHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 9887766553
No 50
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=61.20 E-value=48 Score=33.28 Aligned_cols=105 Identities=9% Similarity=0.018 Sum_probs=73.5
Q ss_pred CCCCEEEEEcCCC-CCCCchHHHhhhHHHHHHHHHHhhhh-cccCCCCcEEEEeCChhHHHHHHHHHHhhcccCcEEEEe
Q 041055 206 TQDDTAAILYSSG-TTGTSKGVILTHANFISIMQLLRWTV-DVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVM 283 (526)
Q Consensus 206 ~~~~~a~i~~TSG-TTG~PK~v~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 283 (526)
.|+.+|++....+ ..+. .-.+|.+.+...+..+...+ ..+..++|++...++-..- +...+++++..|+..+..
T Consensus 32 ~p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSID--YVMTIYALWRVAATPVPI 107 (549)
T ss_dssp HTTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHHHHhCCEEEcc
Confidence 4577777654322 1121 13578888887776665544 2357889999988886433 335677888999998887
Q ss_pred c-CCCHHHHHHHHHhcCccEeecccHHHHHHH
Q 041055 284 Q-RFDLQAMIEAIKTYQVNNIPLVPPVILGLV 314 (526)
Q Consensus 284 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 314 (526)
+ ....+.+...++..+++.++..+.....+.
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~ 139 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLYENFK 139 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHHHHHH
Confidence 5 578899999999999999988876655443
No 51
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=58.98 E-value=51 Score=32.99 Aligned_cols=84 Identities=10% Similarity=0.040 Sum_probs=64.5
Q ss_pred ceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHH---HHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCe
Q 041055 77 ERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPS---ICLAIFSLGAILSPANSINTESEIVKQVRDSGAK 153 (526)
Q Consensus 77 ~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~---~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 153 (526)
-.+|.+.+...+..... .+++.++|++...+|-...+-. .+++++..|+..+..+ ...++.+...+++.++.
T Consensus 200 V~~th~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t 274 (539)
T 1mdb_A 200 IPRTHDDYIYSLKRSVE----VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP-SPSPDDAFPLIEREKVT 274 (539)
T ss_dssp EEEEHHHHHHHHHHHHH----HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SSSHHHHHHHHHHHTCS
T ss_pred EEEehHHHHHHHHHHHH----hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC-CCCHHHHHHHHHHcCCe
Confidence 36888888776655433 2678999999988887654433 4788899999888765 46789999999999999
Q ss_pred EEEEcchhHHHh
Q 041055 154 LIISASEELQKL 165 (526)
Q Consensus 154 ~ii~~~~~~~~~ 165 (526)
++...+..+..+
T Consensus 275 ~~~~~P~~~~~l 286 (539)
T 1mdb_A 275 ITALVPPLAMVW 286 (539)
T ss_dssp EEEECHHHHHHH
T ss_pred EEEccHHHHHHH
Confidence 999888766554
No 52
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=58.66 E-value=44 Score=32.68 Aligned_cols=106 Identities=11% Similarity=0.029 Sum_probs=74.2
Q ss_pred CCCCEEEEEcCC--CCCCCchHHHhhhHHHHHHHHHHhhhhcccCCCCcEEEEeCChhHHHHHHHHHHhhcccCcEEEEe
Q 041055 206 TQDDTAAILYSS--GTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVM 283 (526)
Q Consensus 206 ~~~~~a~i~~TS--GTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 283 (526)
.|+.+|++.... +.+| ....+|.+.+...+..+...+.-...++|++...++-..- +...+++++..|+..+..
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g~~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCGSTGDRVVISAPQGLE--YVVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHH--HHHHHHHHHHhCcEEEee
Confidence 467777765432 2233 2245799999888777766654211378999888875433 335677888999999887
Q ss_pred cC----CCHHHHHHHHHhcCccEeecccHHHHHHHh
Q 041055 284 QR----FDLQAMIEAIKTYQVNNIPLVPPVILGLVK 315 (526)
Q Consensus 284 ~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 315 (526)
.. ...+.+...++..++..++..+.....+.+
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 53 456788899999999999988877666554
No 53
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=58.08 E-value=59 Score=32.56 Aligned_cols=84 Identities=11% Similarity=0.072 Sum_probs=65.0
Q ss_pred ceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHH---HHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCe
Q 041055 77 ERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPS---ICLAIFSLGAILSPANSINTESEIVKQVRDSGAK 153 (526)
Q Consensus 77 ~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~---~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 153 (526)
-.+|.+.+...+...+. .+++.++|++...+|-...+-. .+++++..|+..+..+ ...+..+...+++.++.
T Consensus 209 v~~sh~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t 283 (544)
T 3o83_A 209 IPRTHNDYDYSVRASAE----ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP-NPEPLNCFSIIQRHQVN 283 (544)
T ss_dssp EEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTCC
T ss_pred EEechHHHHHHHHHHHH----HhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC-CCCHHHHHHHHHHHCCC
Confidence 36899988777665543 3688999999999887655433 3688889999888765 46788899999999999
Q ss_pred EEEEcchhHHHh
Q 041055 154 LIISASEELQKL 165 (526)
Q Consensus 154 ~ii~~~~~~~~~ 165 (526)
++...+..+..+
T Consensus 284 ~~~~~P~~~~~l 295 (544)
T 3o83_A 284 MASLVPSAVIMW 295 (544)
T ss_dssp EEEECHHHHHHH
T ss_pred EEEechHHHHHH
Confidence 999888766554
No 54
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=57.35 E-value=36 Score=33.81 Aligned_cols=85 Identities=14% Similarity=0.126 Sum_probs=65.5
Q ss_pred ceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCch-HHHHHHHHHcCCEEccCCCC--CCHHHHHHHHHhcCCe
Q 041055 77 ERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLY-PSICLAIFSLGAILSPANSI--NTESEIVKQVRDSGAK 153 (526)
Q Consensus 77 ~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~ 153 (526)
-.+|.+.+...+.... +.+++.++|++..+++-...+ +..+++++..|+..+.++.. ..++.+...+++.++.
T Consensus 162 v~~th~~l~~~~~~~~----~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t 237 (512)
T 3fce_A 162 VQITYNCLVSFTKWAV----EDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQ 237 (512)
T ss_dssp EEEEHHHHHHHHHHHH----HHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCC
T ss_pred EEEehHHHHHHHHHHH----HhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCc
Confidence 3589888876655443 337889999999998876544 45678899999998887653 5678899999999999
Q ss_pred EEEEcchhHHHh
Q 041055 154 LIISASEELQKL 165 (526)
Q Consensus 154 ~ii~~~~~~~~~ 165 (526)
+++..+..+..+
T Consensus 238 ~~~~~P~~~~~l 249 (512)
T 3fce_A 238 VWTSTPSFAEMC 249 (512)
T ss_dssp EEEECHHHHHHH
T ss_pred EEEecHHHHHHH
Confidence 999888766554
No 55
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=56.56 E-value=59 Score=33.64 Aligned_cols=98 Identities=13% Similarity=0.150 Sum_probs=71.0
Q ss_pred CCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhhc--ccCCCCcEEEEeCChhHHHHHHHHHHhhcccCcEEEEe
Q 041055 206 TQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVD--VTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVM 283 (526)
Q Consensus 206 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~--~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 283 (526)
.++.+|++.... .+|. ...+|.+.+...+..+...+. .+..++|++...+|...- +...+++++..|+..+..
T Consensus 95 ~pd~~Al~~~~~-~~~~--~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e--~v~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPGQ--GYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPE--AIITLLAISRIGAIHSVV 169 (663)
T ss_dssp CTTSEEEEEECS-STTC--CEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHH--HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEEcC-CCCc--eEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCEEEee
Confidence 457777765422 1221 235789988887777666553 457899999999986543 335677888899988877
Q ss_pred -cCCCHHHHHHHHHhcCccEeecccH
Q 041055 284 -QRFDLQAMIEAIKTYQVNNIPLVPP 308 (526)
Q Consensus 284 -~~~~~~~~~~~i~~~~~t~~~~~P~ 308 (526)
+.+..+.+...+++.++..++....
T Consensus 170 ~~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 170 FAGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEccc
Confidence 4688999999999999999887653
No 56
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=55.98 E-value=38 Score=33.63 Aligned_cols=85 Identities=16% Similarity=0.167 Sum_probs=64.9
Q ss_pred eeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCch-HHHHHHHHHcCCEEccCCCC--CCHHHHHHHHHhcCCeE
Q 041055 78 RVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLY-PSICLAIFSLGAILSPANSI--NTESEIVKQVRDSGAKL 154 (526)
Q Consensus 78 ~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~ 154 (526)
.+|.+.+...+..++. .+++.++|++..+++-...+ +..+++++..|+..+.++.. ..++.+...+++.++.+
T Consensus 162 ~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 237 (511)
T 3e7w_A 162 QISAANLQSFTDWICA----DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNV 237 (511)
T ss_dssp EEEHHHHHHHHHHHHH----HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSE
T ss_pred EEcHHHHHHHHHHHHH----hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcE
Confidence 5888888766655433 36889999999998876544 44578889999988877543 46788899999999999
Q ss_pred EEEcchhHHHhh
Q 041055 155 IISASEELQKLT 166 (526)
Q Consensus 155 ii~~~~~~~~~~ 166 (526)
++..+..+..+.
T Consensus 238 ~~~~P~~~~~l~ 249 (511)
T 3e7w_A 238 WTSTPSFVQMCL 249 (511)
T ss_dssp EEECHHHHHHHH
T ss_pred EEecHHHHHHHH
Confidence 998887666543
No 57
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=53.17 E-value=33 Score=34.49 Aligned_cols=88 Identities=6% Similarity=0.001 Sum_probs=66.2
Q ss_pred ceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCch-HHHHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCeEE
Q 041055 77 ERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLY-PSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLI 155 (526)
Q Consensus 77 ~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 155 (526)
-.+|.+.+...+......+.. .++.++|++..+++-...+ +...++++..|+..+... ...++.+...+++.++.++
T Consensus 208 V~~th~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~ 285 (550)
T 3rix_A 208 VALPHRTACVRFSHARDPIFG-NQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSA 285 (550)
T ss_dssp EEEEHHHHHHHHHHHTCTTTS-CCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEE
T ss_pred hhhhHHHHHHHHHHhhhhhcc-ccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEE
Confidence 358888887666554443332 5788999999888876543 345677888999888775 5788999999999999999
Q ss_pred EEcchhHHHhh
Q 041055 156 ISASEELQKLT 166 (526)
Q Consensus 156 i~~~~~~~~~~ 166 (526)
+..+..+..+.
T Consensus 286 ~~~P~~~~~l~ 296 (550)
T 3rix_A 286 LLVPTLFSFFA 296 (550)
T ss_dssp EECHHHHHHHH
T ss_pred EeCcHHHHHHH
Confidence 99888766554
No 58
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=51.31 E-value=88 Score=31.00 Aligned_cols=84 Identities=14% Similarity=0.086 Sum_probs=63.0
Q ss_pred ceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHHH--HHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCeE
Q 041055 77 ERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSI--CLAIFSLGAILSPANSINTESEIVKQVRDSGAKL 154 (526)
Q Consensus 77 ~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~~--~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 154 (526)
-.+|.+.+...+..++. .+++.++|++...+|-...+-.. +++.+ .|+..+..+ ....+.+...+++.++.+
T Consensus 188 V~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 261 (517)
T 3r44_A 188 VVHTHESVHSAASSWAS----TIDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMP-QFDATKVWSLIVEERVCI 261 (517)
T ss_dssp EEEEHHHHHHHHHHHHH----HSCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEECS-SCCHHHHHHHHHHTTCCE
T ss_pred eeeeHHHHHHHHHHHHH----hcCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEeC-CCCHHHHHHHHHHhCCeE
Confidence 36898888776665443 36889999999988876554333 44444 888887764 578899999999999999
Q ss_pred EEEcchhHHHhh
Q 041055 155 IISASEELQKLT 166 (526)
Q Consensus 155 ii~~~~~~~~~~ 166 (526)
+...+..+..+.
T Consensus 262 ~~~~P~~~~~l~ 273 (517)
T 3r44_A 262 GGAVPAILNFMR 273 (517)
T ss_dssp EEECHHHHHHHH
T ss_pred EEeHHHHHHHHH
Confidence 999887766553
No 59
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=50.27 E-value=31 Score=24.29 Aligned_cols=45 Identities=27% Similarity=0.245 Sum_probs=30.3
Q ss_pred hHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhc
Q 041055 471 PAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQ 525 (526)
Q Consensus 471 ~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~l~~~l~~~ 525 (526)
..++++.|.++|+|.+|..+.-+. -.++.|..+ +.+++.+++.++
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~~-----D~ll~v~~~-----d~~~l~~~i~~~ 59 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGEY-----DLIVKVETD-----TLKDLDQFITEK 59 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSSC-----SEEEEEEES-----SHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCeeEEEEEcccC-----CEEEEEEEC-----CHHHHHHHHHHH
Confidence 478999999999999999875322 134444332 356777776644
No 60
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=50.11 E-value=73 Score=32.10 Aligned_cols=96 Identities=9% Similarity=0.016 Sum_probs=69.0
Q ss_pred CCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhh-cccCCCCcEEEEeCChhHHHHHHHHHHhhcccCcEEEEec
Q 041055 206 TQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTV-DVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQ 284 (526)
Q Consensus 206 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 284 (526)
.|+.+|++.. ...+|.+.+...+..+...+ ..+..++|++...++-.. .+...+++++..|+..+..+
T Consensus 52 ~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~Gav~vpl~ 120 (563)
T 1amu_A 52 RPNNVAIVCE---------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSI--DLFIGILAVLKAGGAYVPID 120 (563)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH--HHHHHHHHHHHTTCEEEECC
T ss_pred CCCCeEEEeC---------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH--HHHHHHHHHHHhCCEEEEeC
Confidence 4567776631 12478888887766655444 234778999988887643 23356778888999988875
Q ss_pred -CCCHHHHHHHHHhcCccEeecccHHHHH
Q 041055 285 -RFDLQAMIEAIKTYQVNNIPLVPPVILG 312 (526)
Q Consensus 285 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 312 (526)
.+..+.+...++..++..++..+.....
T Consensus 121 ~~~~~~~l~~il~~~~~~~li~~~~~~~~ 149 (563)
T 1amu_A 121 IEYPKERIQYILDDSQARMLLTQKHLVHL 149 (563)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGHHH
T ss_pred CCCcHHHHHHHHHhcCCCEEEEcCchhhh
Confidence 5788999999999999999887765443
No 61
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=48.15 E-value=56 Score=32.71 Aligned_cols=86 Identities=14% Similarity=0.087 Sum_probs=63.1
Q ss_pred eeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchH-HHHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCeEEE
Q 041055 78 RVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYP-SICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLII 156 (526)
Q Consensus 78 ~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~-~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 156 (526)
.+|.+.+...+... .+...+++.++|++...+|-.-.+- ..+++++..|+..+..++...++.+...+++.++.+++
T Consensus 195 ~~sh~~l~~~~~~~--~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~ 272 (541)
T 1v25_A 195 VYSHRALVLHSLAA--SLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTA 272 (541)
T ss_dssp EEEHHHHHHHHHHT--TSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEE
T ss_pred eeehHHHHHHHhhh--hhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEe
Confidence 57888876544321 1212257889999998888654332 24577888999988877677899999999999999999
Q ss_pred EcchhHHHh
Q 041055 157 SASEELQKL 165 (526)
Q Consensus 157 ~~~~~~~~~ 165 (526)
..+..+..+
T Consensus 273 ~~P~~~~~l 281 (541)
T 1v25_A 273 GVPTVWLAL 281 (541)
T ss_dssp ECHHHHHHH
T ss_pred cchHHHHHH
Confidence 888766554
No 62
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=46.72 E-value=57 Score=33.06 Aligned_cols=97 Identities=12% Similarity=0.081 Sum_probs=69.5
Q ss_pred CCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhh-cccCCCCcEEEEeCChhHHHHHHHHHHhhcccCcEEEEec
Q 041055 206 TQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTV-DVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQ 284 (526)
Q Consensus 206 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 284 (526)
.|+.+|++..... |. ...+|.+.+...+..+...+ ..+..++|++...++-..- +...+++++..|+..+...
T Consensus 69 ~pd~~Al~~~~~~--g~--~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e--~~~~~lA~~~~Gav~vpl~ 142 (580)
T 3etc_A 69 SPEKLAMIWCDDY--GN--EKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYD--FWYCMLGLHKLGAIAVPAT 142 (580)
T ss_dssp CTTCEEEEEEESS--SC--EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTH--HHHHHHHHHHHTCEEEECC
T ss_pred CCCCEEEEEEcCC--CC--EeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH--HHHHHHHHHhCCEEEEeCC
Confidence 5677887764321 21 24578888887776665544 2357899999998886433 3356778888999888775
Q ss_pred -CCCHHHHHHHHHhcCccEeecccH
Q 041055 285 -RFDLQAMIEAIKTYQVNNIPLVPP 308 (526)
Q Consensus 285 -~~~~~~~~~~i~~~~~t~~~~~P~ 308 (526)
.+..+.+...+++.++..++..+.
T Consensus 143 ~~~~~~~l~~~l~~~~~~~ii~~~~ 167 (580)
T 3etc_A 143 HMLKTRDIVYRIEKAGLKMIVCIAE 167 (580)
T ss_dssp TTCCHHHHHHHHHHHTCCEEEEESS
T ss_pred ccCCHHHHHHHHHhcCCCEEEEecc
Confidence 578899999999999999887553
No 63
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=45.57 E-value=1.2e+02 Score=29.83 Aligned_cols=83 Identities=14% Similarity=0.131 Sum_probs=58.9
Q ss_pred eeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchH-HHHHH-HHHcCCEEccCCCCCCHHHHHHHHHhcCCeEE
Q 041055 78 RVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYP-SICLA-IFSLGAILSPANSINTESEIVKQVRDSGAKLI 155 (526)
Q Consensus 78 ~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~-~~~lA-~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 155 (526)
.+|.+.+...+..+.. .+++.++|++..++|-...+- ...+. ++..|+.+++. ...++.+...+++.++.++
T Consensus 179 ~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~--~~~~~~~~~~i~~~~~t~~ 252 (509)
T 3ivr_A 179 LISQGNLLIAQSSLVD----AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA--KFDPAQAARDIEAHKVTVM 252 (509)
T ss_dssp EEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS--SCCHHHHHHHHHHHTCCEE
T ss_pred EEehHHHHHHHHHHHH----hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEec--ccCHHHHHHHHHHHCCcEE
Confidence 5888888776665443 368899999999888765432 23334 44445444443 6789999999999999999
Q ss_pred EEcchhHHHhh
Q 041055 156 ISASEELQKLT 166 (526)
Q Consensus 156 i~~~~~~~~~~ 166 (526)
...+..+..+.
T Consensus 253 ~~~p~~~~~l~ 263 (509)
T 3ivr_A 253 AEFAPMLGNIL 263 (509)
T ss_dssp EEETTHHHHHH
T ss_pred EecHHHHHHHH
Confidence 88877666553
No 64
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=45.00 E-value=83 Score=31.68 Aligned_cols=92 Identities=10% Similarity=0.051 Sum_probs=67.0
Q ss_pred CCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhh-cccCCCCcEEEEeCChhHHHHHHHHHHhhcccCcEEEEec
Q 041055 206 TQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTV-DVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQ 284 (526)
Q Consensus 206 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 284 (526)
.|+.+|++.- .-.+|.+.+...+..+...+ ..+..++|++...++-..- +...+++++..|+..+..+
T Consensus 88 ~pd~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~vpl~ 156 (570)
T 4gr5_A 88 APDAVALLHE---------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFD--MVVALLAVLKAGGGYTMLD 156 (570)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECC
T ss_pred CCCCeEEECC---------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH--HHHHHHHHHHHCCEEEEcC
Confidence 4566776641 12478888887777665544 2357889999988886443 3356778889999988875
Q ss_pred -CCCHHHHHHHHHhcCccEeecccH
Q 041055 285 -RFDLQAMIEAIKTYQVNNIPLVPP 308 (526)
Q Consensus 285 -~~~~~~~~~~i~~~~~t~~~~~P~ 308 (526)
....+.+...++..++..++....
T Consensus 157 ~~~~~~~l~~~l~~~~~~~~i~~~~ 181 (570)
T 4gr5_A 157 PQFPVERLALSLEDTGAPLLVTSRP 181 (570)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECTT
T ss_pred CCChHHHHHHHHHhcCCCEEEecch
Confidence 568899999999999998887654
No 65
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=42.20 E-value=61 Score=30.13 Aligned_cols=91 Identities=13% Similarity=0.014 Sum_probs=57.3
Q ss_pred ceEEEeCCCCceeCHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEECCCCCchHHHHHHHHHcCCEEccCCCCCCHHHHHH
Q 041055 67 RVALIDSATHERVTYAQLHRSIRSLASGLYHALG-VRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSINTESEIVK 145 (526)
Q Consensus 67 ~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~g-l~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 145 (526)
++-+...+.+.+=||+.--. ...+.. ..+ .| +++|+.|.+....+-.-..+.++|.+.|.-++.+-|...+..-..
T Consensus 36 ~i~~K~E~~~ptGSfK~R~a-~~~i~~-a~~-~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~ 112 (334)
T 3tbh_A 36 KVVLKMECENPMASVKDRLG-FAIYDK-AEK-EGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRC 112 (334)
T ss_dssp EEEEEEGGGSTTSBTHHHHH-HHHHHH-HHH-TTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred EEEEEeCCCCCccCcHHHHH-HHHHHH-HHH-cCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHH
Confidence 44444322223345665422 122333 334 45 488888655556677778888889999987776656555556677
Q ss_pred HHHhcCCeEEEEcch
Q 041055 146 QVRDSGAKLIISASE 160 (526)
Q Consensus 146 ~l~~~~~~~ii~~~~ 160 (526)
.++..++++++++..
T Consensus 113 ~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 113 LLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHCCCEEEEECCC
Confidence 889999999999764
No 66
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=42.10 E-value=75 Score=31.36 Aligned_cols=84 Identities=12% Similarity=0.196 Sum_probs=62.8
Q ss_pred eeCHHHHHHHHHHHHHHHHHhcCC--CCCCEEEEECCCCCchH--HHHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCe
Q 041055 78 RVTYAQLHRSIRSLASGLYHALGV--RKGDVVFVLAPNSLLYP--SICLAIFSLGAILSPANSINTESEIVKQVRDSGAK 153 (526)
Q Consensus 78 ~~Ty~el~~~~~~lA~~L~~~~gl--~~gd~V~i~~~n~~~~~--~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 153 (526)
.+|.+.+...+..++ ..+++ .++|++...+|-...+- ..+++++..|+..+..+. ..+..+...+++.++.
T Consensus 172 ~~sh~~~~~~~~~~~----~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t 246 (504)
T 1t5h_X 172 IIPQRAAESRVLFMS----TQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEE-FRPVDALQLVQQEQVT 246 (504)
T ss_dssp EEEGGGHHHHHHHHH----HTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSS-CCHHHHHHHHHHHTCC
T ss_pred EecHHHHHHHHHHHH----HhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCC-CCHHHHHHHHHHhCCe
Confidence 578777766655443 23677 78899888887765443 346888899999887764 6788999999999999
Q ss_pred EEEEcchhHHHhh
Q 041055 154 LIISASEELQKLT 166 (526)
Q Consensus 154 ~ii~~~~~~~~~~ 166 (526)
+++..+..+..+.
T Consensus 247 ~~~~~P~~~~~l~ 259 (504)
T 1t5h_X 247 SLFATPTHLDALA 259 (504)
T ss_dssp EEECCHHHHHHHH
T ss_pred EEEeChHHHHHHH
Confidence 9998887666543
No 67
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=41.74 E-value=84 Score=31.22 Aligned_cols=85 Identities=19% Similarity=0.105 Sum_probs=63.1
Q ss_pred eeCHHHH-HHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHH--HHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCeE
Q 041055 78 RVTYAQL-HRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPS--ICLAIFSLGAILSPANSINTESEIVKQVRDSGAKL 154 (526)
Q Consensus 78 ~~Ty~el-~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~--~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 154 (526)
.+|.+.+ ..... .....+++.++|++...++-...+-. .++..+..|+..+.+++....+.+...+++.++.+
T Consensus 202 ~~sh~~l~~~~~~----~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~ 277 (529)
T 2v7b_A 202 VHTHANLYWTAEL----YAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTV 277 (529)
T ss_dssp EEEHHHHHHHHHH----TCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSE
T ss_pred EEEhhHHHHHHHH----HhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEE
Confidence 5788877 33222 12223578899999988887765533 35678889999888877788999999999999999
Q ss_pred EEEcchhHHHhh
Q 041055 155 IISASEELQKLT 166 (526)
Q Consensus 155 ii~~~~~~~~~~ 166 (526)
++..+..+..+.
T Consensus 278 ~~~~P~~~~~l~ 289 (529)
T 2v7b_A 278 FYGVPTLYANML 289 (529)
T ss_dssp EEECHHHHHHHH
T ss_pred EEecHHHHHHHH
Confidence 998887665543
No 68
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=41.23 E-value=1.5e+02 Score=30.21 Aligned_cols=84 Identities=11% Similarity=0.063 Sum_probs=63.7
Q ss_pred ceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHH---HHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCe
Q 041055 77 ERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPS---ICLAIFSLGAILSPANSINTESEIVKQVRDSGAK 153 (526)
Q Consensus 77 ~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~---~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 153 (526)
-.+|.+.+...+..... .+++.++|++..+++-...+-. .+++++..|+..+..+. .....+...+++.++.
T Consensus 202 V~~th~~~~~~~~~~~~----~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t 276 (617)
T 3rg2_A 202 IPRTHNDYYYSVRRSVE----ICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAAD-PSATLCFPLIEKHQVN 276 (617)
T ss_dssp EEEEHHHHHHHHHHHHH----HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCC
T ss_pred eehhHHHHHHHHHHHHH----hcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHhCCc
Confidence 36888888776665443 2678999999999886655433 37888889988887654 5778888999999999
Q ss_pred EEEEcchhHHHh
Q 041055 154 LIISASEELQKL 165 (526)
Q Consensus 154 ~ii~~~~~~~~~ 165 (526)
++...+..+..+
T Consensus 277 ~~~~~P~~~~~l 288 (617)
T 3rg2_A 277 VTALVPPAVSLW 288 (617)
T ss_dssp EEEECHHHHHHH
T ss_pred EEEcchHHHHHH
Confidence 999988766544
No 69
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=40.96 E-value=44 Score=23.27 Aligned_cols=45 Identities=20% Similarity=0.090 Sum_probs=29.5
Q ss_pred hHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhc
Q 041055 471 PAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQ 525 (526)
Q Consensus 471 ~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~l~~~l~~~ 525 (526)
..++++.|.++|+|.+|..+.-+. -.++.|.. .+.+++.+++.++
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~-----d~l~~v~~-----~d~~~l~~~~~~~ 59 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGVY-----DIVVKVEA-----DSMDKLKDFVTNT 59 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSSC-----SEEEEEEC-----SSHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCeEEEEEEeccC-----CEEEEEEE-----CCHHHHHHHHHHH
Confidence 378999999999999999874222 23444432 2346666666543
No 70
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=40.19 E-value=1.1e+02 Score=33.43 Aligned_cols=97 Identities=13% Similarity=0.103 Sum_probs=70.4
Q ss_pred CCCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhh-cccCCCCcEEEEeCChhHHHHHHHHHHhhcccCcEEEEe
Q 041055 205 LTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTV-DVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVM 283 (526)
Q Consensus 205 ~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 283 (526)
..|+.+|++...+| ..+|.+.+...+..+...+ ..+..++|++...++-.. .+...+++++..|+..+..
T Consensus 73 ~~pd~~Al~~~~~~-------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~--e~~v~~lA~~~~Ga~~vpl 143 (979)
T 3tsy_A 73 EFATKPCLINGPTG-------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCP--EFVLSFLAASFRGATATAA 143 (979)
T ss_dssp GTTTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCH--HHHHHHHHHHHHTCEEEEE
T ss_pred hCCCCeEEEECCCC-------cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCH--HHHHHHHHHHHcCCEEEee
Confidence 35678887753333 3478888887776655544 235788999998888643 3335677888899998877
Q ss_pred c-CCCHHHHHHHHHhcCccEeecccHHH
Q 041055 284 Q-RFDLQAMIEAIKTYQVNNIPLVPPVI 310 (526)
Q Consensus 284 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~ 310 (526)
+ .+.++.+...++..++..++..+...
T Consensus 144 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 144 NPFFTPAEIAKQAKASNTKLIITEARYV 171 (979)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEChHHH
Confidence 5 67889999999999999998776543
No 71
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=39.83 E-value=84 Score=31.03 Aligned_cols=81 Identities=7% Similarity=-0.017 Sum_probs=61.4
Q ss_pred HhhhHHHHHHHHHHhhhh-cccCCCCcEEEEeCChhHHHHHHHHHHhhcccCcEEEEec-CCCHHHHHHHHHhcCccEee
Q 041055 227 ILTHANFISIMQLLRWTV-DVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQ-RFDLQAMIEAIKTYQVNNIP 304 (526)
Q Consensus 227 ~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 304 (526)
.+|.+.+...+..+...+ ..+..++|++...++-.. .+...+++++..|+..+..+ ....+.+...+++.++..++
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~--~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi 105 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSV--EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVV 105 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCH--HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH--HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEE
Confidence 478888887776665544 235788999988888643 23356788889999988875 57889999999999999998
Q ss_pred cccHH
Q 041055 305 LVPPV 309 (526)
Q Consensus 305 ~~P~~ 309 (526)
..+..
T Consensus 106 ~~~~~ 110 (503)
T 4fuq_A 106 CDPSK 110 (503)
T ss_dssp ECGGG
T ss_pred ECchh
Confidence 76643
No 72
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=39.46 E-value=68 Score=32.43 Aligned_cols=84 Identities=11% Similarity=0.048 Sum_probs=63.2
Q ss_pred ceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHH--HHHHHHHcCCEEccCCCCC---CHHHHHHHHHhcC
Q 041055 77 ERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPS--ICLAIFSLGAILSPANSIN---TESEIVKQVRDSG 151 (526)
Q Consensus 77 ~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~--~~lA~~~~G~~~v~l~~~~---~~~~l~~~l~~~~ 151 (526)
-.+|.+.+...+...+. . +++.++|++..++|-...+-. .+++++..|+..+...+.. .+..+...+++.+
T Consensus 185 V~~th~~l~~~~~~~~~---~-~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~ 260 (590)
T 3kxw_A 185 VMVSHHNLLDNLNKIFT---S-FHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYK 260 (590)
T ss_dssp EEEEHHHHHHHHHHHHH---H-TTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHT
T ss_pred EEeeHHHHHHHHHHHHH---h-hCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhC
Confidence 35899988877665543 3 688999999999988765533 3688899999988876532 5677888999999
Q ss_pred CeEEEEcchhHHH
Q 041055 152 AKLIISASEELQK 164 (526)
Q Consensus 152 ~~~ii~~~~~~~~ 164 (526)
+.++...+.....
T Consensus 261 ~t~~~~~p~~~~~ 273 (590)
T 3kxw_A 261 ATISGSPNFAYDY 273 (590)
T ss_dssp CSEEEECTHHHHH
T ss_pred CeeecCChhHHHH
Confidence 9988876655444
No 73
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=39.13 E-value=42 Score=24.13 Aligned_cols=21 Identities=10% Similarity=0.227 Sum_probs=18.8
Q ss_pred hHHHHHHHhcCCCcccEEEEe
Q 041055 471 PAELEAVLLSHPNILDAAVIP 491 (526)
Q Consensus 471 ~~eIE~~l~~~~~v~~~~vv~ 491 (526)
..++++.|.++|+|.+|..+.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vt 35 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVT 35 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEES
T ss_pred HHHHHHHHhcCCCeEEEEEee
Confidence 478999999999999999885
No 74
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=37.31 E-value=74 Score=29.72 Aligned_cols=91 Identities=14% Similarity=0.118 Sum_probs=60.7
Q ss_pred ceEEEeCCCCceeCHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEECCCCCchHHHHHHHHHcCCEEccCCCCCCHHHHHH
Q 041055 67 RVALIDSATHERVTYAQLHRSIRSLASGLYHALG-VRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSINTESEIVK 145 (526)
Q Consensus 67 ~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~g-l~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 145 (526)
++-+..-....+=||+.- -....+.... + .| +++|.+..+....+-.-+.+.++|.++|.-++.+-|...+..-..
T Consensus 51 ~IylK~E~lnptGSfK~R-gA~~~i~~a~-~-~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~ 127 (344)
T 3vc3_A 51 YVAVKQEMMQPTASIADR-PAYAMITDAE-E-KNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRV 127 (344)
T ss_dssp EEEEEEGGGSTTSBTTHH-HHHHHHHHHH-H-TTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred EEEEEecCCCCCCCcHHH-HHHHHHHHHH-H-cCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHH
Confidence 444443222334456532 1223333333 3 34 677876667777778888888999999988877777766777788
Q ss_pred HHHhcCCeEEEEcch
Q 041055 146 QVRDSGAKLIISASE 160 (526)
Q Consensus 146 ~l~~~~~~~ii~~~~ 160 (526)
.++..++++++++..
T Consensus 128 ~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 128 TMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEECCC
Confidence 899999999998753
No 75
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=37.30 E-value=79 Score=31.90 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=61.6
Q ss_pred eeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchHH--HHHHHHHcCCEEccCCC-CCCHHHHHHHHHhcCCeE
Q 041055 78 RVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPS--ICLAIFSLGAILSPANS-INTESEIVKQVRDSGAKL 154 (526)
Q Consensus 78 ~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~~--~~lA~~~~G~~~v~l~~-~~~~~~l~~~l~~~~~~~ 154 (526)
.+|.+ +..... +.... ..++.++|++..+++-...+-. .+++.+..|+..+.... .+.+..+...+++.++.+
T Consensus 225 ~~sh~-~~~~~~--~~~~~-~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~ 300 (570)
T 3c5e_A 225 EHSYS-SLGLKA--KMDAG-WTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKS 300 (570)
T ss_dssp EEEHH-HHHHHH--HHHTT-TTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCE
T ss_pred EechH-HHHhhh--hhhhh-hcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeE
Confidence 57887 433211 11222 3789999999988887755433 46788888988777653 678999999999999999
Q ss_pred EEEcchhHHHhh
Q 041055 155 IISASEELQKLT 166 (526)
Q Consensus 155 ii~~~~~~~~~~ 166 (526)
++..+..+..+.
T Consensus 301 ~~~~P~~~~~l~ 312 (570)
T 3c5e_A 301 MMGAPIVYRMLL 312 (570)
T ss_dssp EEECHHHHHHHH
T ss_pred EeccHHHHHHHH
Confidence 999887776654
No 76
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=36.25 E-value=97 Score=31.88 Aligned_cols=86 Identities=12% Similarity=0.116 Sum_probs=62.1
Q ss_pred eeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCchH--HHHHHHHHcCCEEccCCCC---CCHHHHHHHHHhcCC
Q 041055 78 RVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYP--SICLAIFSLGAILSPANSI---NTESEIVKQVRDSGA 152 (526)
Q Consensus 78 ~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~~--~~~lA~~~~G~~~v~l~~~---~~~~~l~~~l~~~~~ 152 (526)
.+|.+.+...+.. .+....+++++|++....+-+...- ..+++.+..|+..+..+.. ..++.+...+++.++
T Consensus 275 ~~sh~~~~~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~v 351 (652)
T 1pg4_A 275 LHTTGGYLVYAAT---TFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQV 351 (652)
T ss_dssp EEESHHHHHHHHH---HHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTC
T ss_pred EECchHHHHHHHH---HHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCC
Confidence 5777776544322 2222368899999988877765543 3467899999998877542 467889999999999
Q ss_pred eEEEEcchhHHHhh
Q 041055 153 KLIISASEELQKLT 166 (526)
Q Consensus 153 ~~ii~~~~~~~~~~ 166 (526)
.++.+.+..+..+.
T Consensus 352 t~~~~~P~~~~~l~ 365 (652)
T 1pg4_A 352 NILYTAPTAIRALM 365 (652)
T ss_dssp SEEEECHHHHHHHH
T ss_pred eEEEeCHHHHHHHH
Confidence 99999888776654
No 77
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=35.80 E-value=99 Score=24.32 Aligned_cols=42 Identities=14% Similarity=0.193 Sum_probs=31.3
Q ss_pred hHHHHHHHhcCCCcccEEEEeeeCCCCCc-eEEEEEEeCCCCCC
Q 041055 471 PAELEAVLLSHPNILDAAVIPLEDEEAGQ-IPMAYVVRAAGSQL 513 (526)
Q Consensus 471 ~~eIE~~l~~~~~v~~~~vv~~~~~~~~~-~~~a~vv~~~~~~~ 513 (526)
..|||+...+||+ .-+-++|......-+ ..+.|||-+|..++
T Consensus 65 l~Ele~C~k~~p~-~YVRliGfDn~~~~qs~~~sfIV~RP~~ep 107 (138)
T 4f0h_B 65 LFEINACRKAKSN-FYIKVVGFSSERGIESTIISFIVNRPKHEP 107 (138)
T ss_dssp HHHHHHHHHHTTT-SEEEEEEEECCTTTCEEEEEEEEECCSCCC
T ss_pred HHHHHHHHHHCCC-CeEEEEEEeCCCceEEEEEEEEEeCCCCCC
Confidence 4789999999997 455677776554323 78999999987543
No 78
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=35.68 E-value=2e+02 Score=24.29 Aligned_cols=88 Identities=24% Similarity=0.300 Sum_probs=53.2
Q ss_pred cEEEEeCC-hhHHHHHHHHHHhhcccCcEEEEec-CCCHHHHHHHHHhcCccEeeccc------HHHHHHHhhccCCCCC
Q 041055 252 DIFLCMIP-MFHIYGLAFFATGLFCCGVTIVVMQ-RFDLQAMIEAIKTYQVNNIPLVP------PVILGLVKYCKDSSYL 323 (526)
Q Consensus 252 ~~~l~~~p-~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P------~~~~~l~~~~~~~~~l 323 (526)
.+++.+.+ =.|..|........-..|..++... ...++.+.+.+++++++.+.++- ..+..+++...+ ..+
T Consensus 90 ~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~-~~~ 168 (210)
T 1y80_A 90 KIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALIA-AGL 168 (210)
T ss_dssp EEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHHH-TTC
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHh-cCC
Confidence 34444444 2666776444444456788888664 56889999999999999886542 223333333111 112
Q ss_pred -CCceEEEEecCCCCHHHH
Q 041055 324 -TSLRRVGSGAAPLSKELA 341 (526)
Q Consensus 324 -~~lr~v~~gG~~l~~~~~ 341 (526)
++++ +++||...+++..
T Consensus 169 ~~~~~-v~vGG~~~~~~~~ 186 (210)
T 1y80_A 169 RDRVK-VIVGGAPLSQDFA 186 (210)
T ss_dssp GGGCE-EEEESTTCCHHHH
T ss_pred CCCCe-EEEECCCCCHHHH
Confidence 2343 6778888886654
No 79
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=32.68 E-value=2.3e+02 Score=27.78 Aligned_cols=87 Identities=10% Similarity=0.048 Sum_probs=63.6
Q ss_pred ceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCch-HHHHHHHHHcCCEEccCCCC--CCHHHHHHHHHhcCCe
Q 041055 77 ERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLY-PSICLAIFSLGAILSPANSI--NTESEIVKQVRDSGAK 153 (526)
Q Consensus 77 ~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~ 153 (526)
-.+|.+.+...+..+.... . +++.+++++....+-+... +..+++++..|+..+..+.. .....+...+.+.++.
T Consensus 163 V~~sh~~l~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t 240 (521)
T 3l8c_A 163 VQISHDNLLSFTNWMIEDA-A-FDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVG 240 (521)
T ss_dssp EEEEHHHHHHHHHHHHHCT-T-TCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCS
T ss_pred EEEehHHHHHHHHHHhhcc-c-cCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCc
Confidence 3689988877665444332 1 5778889988887776554 45567888899888877654 3678899999999999
Q ss_pred EEEEcchhHHHh
Q 041055 154 LIISASEELQKL 165 (526)
Q Consensus 154 ~ii~~~~~~~~~ 165 (526)
++...+.....+
T Consensus 241 ~~~~~P~~~~~l 252 (521)
T 3l8c_A 241 IWTSTPSFADMA 252 (521)
T ss_dssp EEEECHHHHHHH
T ss_pred EEEeCCCHHHHH
Confidence 998887766544
No 80
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=31.90 E-value=1.1e+02 Score=31.36 Aligned_cols=96 Identities=15% Similarity=0.054 Sum_probs=68.6
Q ss_pred eeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCch-HHHHHHHHHcCCEEccCC-CCCCHHHHHHHHHhcCCeEE
Q 041055 78 RVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLY-PSICLAIFSLGAILSPAN-SINTESEIVKQVRDSGAKLI 155 (526)
Q Consensus 78 ~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~-~~~~~~~l~~~l~~~~~~~i 155 (526)
.+|.+.+...+. ... .+++.++|++..+++-+.+. +..+++.+..|+.++..+ ....++.+...+++.++.++
T Consensus 183 ~~th~~l~~~~~----~~~-~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~ 257 (620)
T 4dg8_A 183 ACTHAGITRLCL----GQS-FLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSA 257 (620)
T ss_dssp EEEHHHHHHHHS----SCG-GGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEE
T ss_pred EEchHHHHHHHH----HHH-hhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEE
Confidence 578877754332 222 36889999999998877655 344688889998877763 35688999999999999999
Q ss_pred EEcchhHHHhhc------CCCCEEEEcCC
Q 041055 156 ISASEELQKLTK------VNVPIIVTSRD 178 (526)
Q Consensus 156 i~~~~~~~~~~~------~~~~~i~~~~~ 178 (526)
...+..+..+.. ..++.++..+.
T Consensus 258 ~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe 286 (620)
T 4dg8_A 258 WLTASLFNTLVDLDPDCLGGLRQLLTGGD 286 (620)
T ss_dssp EEEHHHHHHHHHHCGGGGTTCSEEEEESS
T ss_pred EccHHHHHHHHhcChhhCCCccEEEEEeC
Confidence 988877665531 24555555543
No 81
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=30.72 E-value=84 Score=29.42 Aligned_cols=81 Identities=17% Similarity=0.139 Sum_probs=54.6
Q ss_pred eeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCch-HHHHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCeEEE
Q 041055 78 RVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLY-PSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLII 156 (526)
Q Consensus 78 ~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 156 (526)
.+|.+.+...+..++. .++++++|++..++|-.-.+ +..++..+..|+..+...+... ....+++.++.++.
T Consensus 56 ~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~---~~~~i~~~~~t~~~ 128 (358)
T 4gs5_A 56 TVTRAQLAASAAMTGK----ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN---PLAGLDHADFDFVA 128 (358)
T ss_dssp EEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC---TTTTCSSCCCSEEE
T ss_pred EEeHHHHHHHHHHHHH----HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc---HHHHHHHhCCeEEE
Confidence 6899988776655443 37889999999988766433 3445666777877776665433 23456677788877
Q ss_pred EcchhHHHh
Q 041055 157 SASEELQKL 165 (526)
Q Consensus 157 ~~~~~~~~~ 165 (526)
..+..+..+
T Consensus 129 ~~P~~l~~l 137 (358)
T 4gs5_A 129 MVPMQLQSI 137 (358)
T ss_dssp ECHHHHHHH
T ss_pred cChHHHHHh
Confidence 776655554
No 82
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=30.34 E-value=2e+02 Score=28.31 Aligned_cols=84 Identities=12% Similarity=0.131 Sum_probs=61.4
Q ss_pred ceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCch--HHHHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCeE
Q 041055 77 ERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLY--PSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKL 154 (526)
Q Consensus 77 ~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 154 (526)
-.+|.+.+...+..++.. +++.++|++...++-.-.+ +..+++.+..|+..+... ....+.+...+ +.++.+
T Consensus 173 V~~sh~~l~~~~~~~~~~----~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i-~~~~t~ 246 (505)
T 3nyq_A 173 AVIPRRALATTLDALADA----WQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG-RFSTEGAAREL-NDGATM 246 (505)
T ss_dssp EEEEHHHHHHHHHHHHHH----HTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS-SCCHHHHHHHH-TTTCCE
T ss_pred EEEeHHHHHHHHHHHHHH----hCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC-CCChHHHHHHH-hhCCeE
Confidence 368999888777655443 5788999998887765433 234688899999988774 56777777777 678999
Q ss_pred EEEcchhHHHhh
Q 041055 155 IISASEELQKLT 166 (526)
Q Consensus 155 ii~~~~~~~~~~ 166 (526)
++..+..+..+.
T Consensus 247 ~~~~P~~~~~l~ 258 (505)
T 3nyq_A 247 LFGVPTMYHRIA 258 (505)
T ss_dssp EEECHHHHHHHH
T ss_pred EEehHHHHHHHH
Confidence 988887665543
No 83
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=29.23 E-value=2e+02 Score=28.65 Aligned_cols=85 Identities=7% Similarity=-0.069 Sum_probs=62.4
Q ss_pred HhhhHHHHHHHHHHhhhh-cccCCCCcEEEEeCChhHHHHHHHHHHhhcccCcEEEEec-CCC-------HHHHHHHHHh
Q 041055 227 ILTHANFISIMQLLRWTV-DVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQ-RFD-------LQAMIEAIKT 297 (526)
Q Consensus 227 ~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~-------~~~~~~~i~~ 297 (526)
.+|.+.+...+..+...+ ..+..++|++...++-.. .+...+++++..|+..+..+ .+. .+.+...++.
T Consensus 49 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~ 126 (576)
T 3gqw_A 49 QLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSS--EFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLAS 126 (576)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSH--HHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHH
T ss_pred EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH--HHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHh
Confidence 578888887777665544 234778999999888644 33356788889999988875 333 5788889999
Q ss_pred cCccEeecccHHHHHH
Q 041055 298 YQVNNIPLVPPVILGL 313 (526)
Q Consensus 298 ~~~t~~~~~P~~~~~l 313 (526)
.++..++........+
T Consensus 127 ~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 127 CQPAAIITGDEWLPLV 142 (576)
T ss_dssp HCCSEEEECGGGHHHH
T ss_pred cCCCEEEecHHHHHHH
Confidence 9999998877655443
No 84
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=28.90 E-value=1.5e+02 Score=27.40 Aligned_cols=60 Identities=18% Similarity=0.362 Sum_probs=34.4
Q ss_pred CCCCCCEEEEECCCCCc------hHHHHHH-HHHcCCEEccCCCCC------------CHHHHHHHHHhcCCeEEEEcc
Q 041055 100 GVRKGDVVFVLAPNSLL------YPSICLA-IFSLGAILSPANSIN------------TESEIVKQVRDSGAKLIISAS 159 (526)
Q Consensus 100 gl~~gd~V~i~~~n~~~------~~~~~lA-~~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~ii~~~ 159 (526)
-+++||+|+|++|.+.- -+-.... +-..|.-++.-.... ..+++...+.+-..++|++..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 47888899988887531 1111112 223465555432211 245566677777888898864
No 85
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=27.72 E-value=1.3e+02 Score=22.97 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=29.8
Q ss_pred hHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCCCCC
Q 041055 471 PAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQ 512 (526)
Q Consensus 471 ~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~~ 512 (526)
..|||+...+||+ .-+-++|.... ...+.+.||+-+|+..
T Consensus 70 l~Ele~C~k~~p~-~yVRliGfD~~-~q~q~~sfIv~RP~~~ 109 (118)
T 3zxw_B 70 LNEVQQCRSEYPN-CFIRVVAFDNI-KQCQVMSFIVYKPNQA 109 (118)
T ss_dssp HHHHHHHHHHCTT-SEEEEEEEETT-TTEEEEEEEEECC---
T ss_pred HHHHHHHHHHCCC-ceEEEEEEeCC-cCEEEEEEEEECCCCC
Confidence 4789999999998 66667777654 5667899999998753
No 86
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=26.83 E-value=1.6e+02 Score=22.11 Aligned_cols=38 Identities=11% Similarity=0.088 Sum_probs=28.9
Q ss_pred hHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCCC
Q 041055 471 PAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAG 510 (526)
Q Consensus 471 ~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~ 510 (526)
..|||+...+||+ .-+-++|.... ...+.+.||+-+|+
T Consensus 71 l~Ele~C~k~~p~-~yVRligfD~~-~q~q~~sfIv~RP~ 108 (109)
T 1rbl_M 71 LDEVRECRSEYGD-CYIRVAGFDNI-KECQTSSFIVHRPG 108 (109)
T ss_dssp HHHHHHHHHHCTT-SEEEEEEEETT-TTEEEEEEEEECCC
T ss_pred HHHHHHHHHHCCC-CeEEEEEEeCC-CcEEEEEEEeeCCC
Confidence 4789999999997 45667777554 45667889998875
No 87
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=25.87 E-value=65 Score=20.43 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=16.3
Q ss_pred HHHHhcCCCCCCEEEEECCCC
Q 041055 94 GLYHALGVRKGDVVFVLAPNS 114 (526)
Q Consensus 94 ~L~~~~gl~~gd~V~i~~~n~ 114 (526)
.+++++|+++||.|.+...+.
T Consensus 19 ~ir~~lgi~~Gd~v~i~~~~~ 39 (53)
T 2l66_A 19 KVRQKFQIKEGDLVKVTFDES 39 (53)
T ss_dssp HHHHHSCCCTTCEEEEEECSS
T ss_pred HHHHHcCcCCCCEEEEEEECC
Confidence 455669999999999887554
No 88
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=25.45 E-value=1.7e+02 Score=27.27 Aligned_cols=80 Identities=18% Similarity=0.167 Sum_probs=48.3
Q ss_pred eeCHHHHHHHH--HHHH-HHHHHhcCCCCCCEEEEECCC-CCchHHHHHHHHHcCCE-EccCCCCCCHHHHHHHHHhcCC
Q 041055 78 RVTYAQLHRSI--RSLA-SGLYHALGVRKGDVVFVLAPN-SLLYPSICLAIFSLGAI-LSPANSINTESEIVKQVRDSGA 152 (526)
Q Consensus 78 ~~Ty~el~~~~--~~lA-~~L~~~~gl~~gd~V~i~~~n-~~~~~~~~lA~~~~G~~-~v~l~~~~~~~~l~~~l~~~~~ 152 (526)
.+++.+..... -..| ..|.+..++++|++|+|+... ..-.+++.+|- ..|+. ++.....-..++....++..++
T Consensus 139 ~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (357)
T 1zsy_A 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGA 217 (357)
T ss_dssp SSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTC
T ss_pred CCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCC
Confidence 46787754321 1122 234442479999999999974 45555555554 46874 3444444444555566778888
Q ss_pred eEEEEc
Q 041055 153 KLIISA 158 (526)
Q Consensus 153 ~~ii~~ 158 (526)
..++..
T Consensus 218 ~~vi~~ 223 (357)
T 1zsy_A 218 EHVITE 223 (357)
T ss_dssp SEEEEH
T ss_pred cEEEec
Confidence 887754
No 89
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=24.73 E-value=1.7e+02 Score=22.03 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=28.3
Q ss_pred hHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCCC
Q 041055 471 PAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAG 510 (526)
Q Consensus 471 ~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~ 510 (526)
..|||+...+||+ .=+-++|.... ...+.+.||+-+|+
T Consensus 73 l~El~~C~k~~p~-~yVRligfD~~-~q~q~~sfIv~RP~ 110 (110)
T 1svd_M 73 LAEIEACRSAYPT-HQVKLVAYDNY-AQSLGLAFVVYRGN 110 (110)
T ss_dssp HHHHHHHHHHSTT-SEEEEEEEETT-TTEEEEEEEEECCC
T ss_pred HHHHHHHHHHCCC-CeEEEEEEeCC-CCEEEEEEEeeCCC
Confidence 4789999999997 45567777554 45667888988764
No 90
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=24.65 E-value=1.6e+02 Score=22.86 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=30.7
Q ss_pred hHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCCCCC
Q 041055 471 PAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQ 512 (526)
Q Consensus 471 ~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~~ 512 (526)
..|||+...++|+ .=+-++|... ..+.+.+.||+-+|...
T Consensus 83 l~El~~C~k~~P~-~YVRligfDn-~~q~q~~sfIv~RP~~~ 122 (128)
T 1wdd_S 83 LKELEEAKKAYPD-AFVRIIGFDN-VRQVQLISFIAYKPPGC 122 (128)
T ss_dssp HHHHHHHHHHCTT-SEEEEEEEET-TTTEEEEEEEEECCTTC
T ss_pred HHHHHHHHHHCCC-CeEEEEEEeC-CCCEEEEEEEEECCCCc
Confidence 5799999999997 4555677654 46678899999998753
No 91
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=24.54 E-value=2e+02 Score=26.58 Aligned_cols=60 Identities=20% Similarity=0.357 Sum_probs=34.2
Q ss_pred CCCCCCEEEEECCCCCch------HHHHHHHH-HcCCEEccCCCC------------CCHHHHHHHHHhcCCeEEEEcc
Q 041055 100 GVRKGDVVFVLAPNSLLY------PSICLAIF-SLGAILSPANSI------------NTESEIVKQVRDSGAKLIISAS 159 (526)
Q Consensus 100 gl~~gd~V~i~~~n~~~~------~~~~lA~~-~~G~~~v~l~~~------------~~~~~l~~~l~~~~~~~ii~~~ 159 (526)
-+++||+|+|++|.+.-- +-.....+ ..|..++.-+.. ...+++...+.+-..++|++..
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 467888888888877521 11222222 356665543211 1244556666667788888864
No 92
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=24.27 E-value=54 Score=29.39 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCC
Q 041055 89 RSLASGLYHALGVRKGDVVFVLAPN 113 (526)
Q Consensus 89 ~~lA~~L~~~~gl~~gd~V~i~~~n 113 (526)
..+.+.|++ +||++||.|.++..-
T Consensus 18 ~~l~~~L~~-LGi~~Gd~llVHsSl 41 (268)
T 3ijw_A 18 KTITNDLRK-LGLKKGMTVIVHSSL 41 (268)
T ss_dssp HHHHHHHHH-HTCCTTCEEEEEECT
T ss_pred HHHHHHHHH-cCCCCCCEEEEEech
Confidence 346677887 999999999999874
No 93
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=24.15 E-value=1.6e+02 Score=27.65 Aligned_cols=63 Identities=10% Similarity=0.046 Sum_probs=40.9
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCCchHHHHHHHHHcCCEEccCCC-----CCCHHHHHHHHHhcC--CeEEEE
Q 041055 91 LASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANS-----INTESEIVKQVRDSG--AKLIIS 157 (526)
Q Consensus 91 lA~~L~~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~-----~~~~~~l~~~l~~~~--~~~ii~ 157 (526)
+...|.. +++++||.|.+-.+.... ..-++...|+.++.++. ....+++...+...+ .++|+.
T Consensus 66 l~~al~~-l~~~~Gd~Vi~~~~~~~~---~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 66 LMAAIQL-KKRKKGKYALMPSFTFPA---TPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHHHHH-HSCTTCCEEEEESSSCTH---HHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHHHHH-cCCCCcCEEEECCCCcHH---HHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 3344555 678999999887665444 34456788987665543 246788888774434 666664
No 94
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=23.61 E-value=1.4e+02 Score=29.75 Aligned_cols=87 Identities=11% Similarity=0.106 Sum_probs=63.3
Q ss_pred eeCHHHHHHHHHHHHHHHHH----hcCCCCCCEEEEECCCCCch-HHHHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCC
Q 041055 78 RVTYAQLHRSIRSLASGLYH----ALGVRKGDVVFVLAPNSLLY-PSICLAIFSLGAILSPANSINTESEIVKQVRDSGA 152 (526)
Q Consensus 78 ~~Ty~el~~~~~~lA~~L~~----~~gl~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~ 152 (526)
.+|.+.+...+..++..+.. ...+...+++....+..... +..++.++..|+..+........+.+...+++.++
T Consensus 194 ~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~ 273 (562)
T 3ite_A 194 RVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGV 273 (562)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTC
T ss_pred EECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCC
Confidence 58999998888777766542 14577788888877776654 34467788899888776544445677788999999
Q ss_pred eEEEEcchhHHH
Q 041055 153 KLIISASEELQK 164 (526)
Q Consensus 153 ~~ii~~~~~~~~ 164 (526)
.++...+..+..
T Consensus 274 t~~~~~P~~l~~ 285 (562)
T 3ite_A 274 THAGIVPSLLDQ 285 (562)
T ss_dssp CEEEECHHHHHH
T ss_pred CEEEcCHHHHhh
Confidence 999888775544
No 95
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=22.77 E-value=1.9e+02 Score=26.87 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=33.3
Q ss_pred CCCCCCEEEEECCCCCc------hHHHHHHHH-HcCCEEccCCCC------------CCHHHHHHHHHhcCCeEEEEcc
Q 041055 100 GVRKGDVVFVLAPNSLL------YPSICLAIF-SLGAILSPANSI------------NTESEIVKQVRDSGAKLIISAS 159 (526)
Q Consensus 100 gl~~gd~V~i~~~n~~~------~~~~~lA~~-~~G~~~v~l~~~------------~~~~~l~~~l~~~~~~~ii~~~ 159 (526)
-+++||+|+|++|.+.- -+-.....+ ..|.-++.-... ...+++...+.+-+.++|+|..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 46788888888887742 121222222 356655542211 1244555666667788888864
No 96
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=22.49 E-value=60 Score=29.19 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=19.1
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCC
Q 041055 91 LASGLYHALGVRKGDVVFVLAPNS 114 (526)
Q Consensus 91 lA~~L~~~~gl~~gd~V~i~~~n~ 114 (526)
+.+.|++ +||++||.|.++..-+
T Consensus 18 L~~~L~~-LGI~~Gd~llVHsSl~ 40 (273)
T 2nyg_A 18 ITEDLKA-LGLKKGMTVLVHSSLS 40 (273)
T ss_dssp HHHHHHH-HTCCTTCEEEEEECSG
T ss_pred HHHHHHH-cCCCCCCEEEEEechH
Confidence 5667877 9999999999998643
No 97
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=22.49 E-value=61 Score=29.30 Aligned_cols=32 Identities=50% Similarity=0.548 Sum_probs=24.4
Q ss_pred CCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCC
Q 041055 75 THERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNS 114 (526)
Q Consensus 75 ~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~ 114 (526)
+++.+|-.+| .+.|++ +||++||.|.++..-+
T Consensus 18 ~~~~~T~~~L-------~~~L~~-LGI~~Gd~llVHsSL~ 49 (286)
T 3sma_A 18 DRELVTRDRL-------ASDLAA-LGVRPGGVLLVHASLS 49 (286)
T ss_dssp -CCEECHHHH-------HHHHHH-HTCCTTCEEEEEECST
T ss_pred cCCCcCHHHH-------HHHHHH-cCCCCCCEEEEEechH
Confidence 4567787665 557877 9999999999997643
No 98
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=22.47 E-value=2e+02 Score=27.70 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=45.9
Q ss_pred cC-CCCCCEEEEECCCCCchHHHHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCeEEEEcc
Q 041055 99 LG-VRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISAS 159 (526)
Q Consensus 99 ~g-l~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 159 (526)
.| +++|....+....+-.-..+.++|.+.|.-++.+-|...+..-...++..++++++++.
T Consensus 168 ~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 168 KGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp TTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred cCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 56 46775555555667777788888999998877666655566677788999999999975
No 99
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=22.43 E-value=2e+02 Score=27.18 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=34.3
Q ss_pred CCCCCCEEEEECCCCCc------hHHHHHHHH-HcCCEEccCCCC--------CC----HHHHHHHHHhcCCeEEEEcc
Q 041055 100 GVRKGDVVFVLAPNSLL------YPSICLAIF-SLGAILSPANSI--------NT----ESEIVKQVRDSGAKLIISAS 159 (526)
Q Consensus 100 gl~~gd~V~i~~~n~~~------~~~~~lA~~-~~G~~~v~l~~~--------~~----~~~l~~~l~~~~~~~ii~~~ 159 (526)
-+++||+|+|++|.+.- -+-.....+ ..|..++.-+.. -+ .+++...+.+-..++|+|..
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 57889999999888752 121222222 357665543221 12 34455555666778888864
No 100
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=22.39 E-value=2.9e+02 Score=24.15 Aligned_cols=83 Identities=13% Similarity=0.199 Sum_probs=42.2
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCc-hHHHH-----HHHHHcCCE-EccCCCCCCHHH---HHHHHHhcCCeEEEEcchh
Q 041055 92 ASGLYHALGVRKGDVVFVLAPNSLL-YPSIC-----LAIFSLGAI-LSPANSINTESE---IVKQVRDSGAKLIISASEE 161 (526)
Q Consensus 92 A~~L~~~~gl~~gd~V~i~~~n~~~-~~~~~-----lA~~~~G~~-~v~l~~~~~~~~---l~~~l~~~~~~~ii~~~~~ 161 (526)
|+.|+. ++..+|+++.++... |...+ -++...|.. ....+.....+. +...+...+++.+|..++.
T Consensus 2 Ar~L~~----~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 77 (277)
T 3hs3_A 2 SLTLYQ----KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSAFT 77 (277)
T ss_dssp ----------CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred chhhhc----CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcchH
Confidence 455544 455688888877432 22222 234456776 555555544433 3344455577776665544
Q ss_pred HHHhhcCCCCEEEEcCC
Q 041055 162 LQKLTKVNVPIIVTSRD 178 (526)
Q Consensus 162 ~~~~~~~~~~~i~~~~~ 178 (526)
...+...+.|++.++..
T Consensus 78 ~~~~~~~~iPvV~~~~~ 94 (277)
T 3hs3_A 78 IPPNFHLNTPLVMYDSA 94 (277)
T ss_dssp CCTTCCCSSCEEEESCC
T ss_pred HHHHHhCCCCEEEEccc
Confidence 44444556777766543
No 101
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=22.37 E-value=66 Score=21.11 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=16.1
Q ss_pred HHHHhcCCCCCCEEEEECCCC
Q 041055 94 GLYHALGVRKGDVVFVLAPNS 114 (526)
Q Consensus 94 ~L~~~~gl~~gd~V~i~~~n~ 114 (526)
.+++++|+++||.|.+...+.
T Consensus 29 eiR~~Lgi~~Gd~l~i~~~~~ 49 (59)
T 1yfb_A 29 ELRRTLGIAEKDALEIYVDDE 49 (59)
T ss_dssp HHHHHTTCCTTCEEEEEEETT
T ss_pred HHHHHcCCCCCCEEEEEEECC
Confidence 455669999999998876543
No 102
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=21.85 E-value=2.6e+02 Score=21.96 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=29.7
Q ss_pred hHHHHHHHhcCCCcccEEEEeeeCCCC-CceEEEEEEeCCCCC
Q 041055 471 PAELEAVLLSHPNILDAAVIPLEDEEA-GQIPMAYVVRAAGSQ 512 (526)
Q Consensus 471 ~~eIE~~l~~~~~v~~~~vv~~~~~~~-~~~~~a~vv~~~~~~ 512 (526)
..|||+.+.+||+ .=+-++|...... ....+.||+-+|...
T Consensus 65 l~Ele~C~k~~p~-~YVRliGfD~~~~~qs~~~sfIV~RP~~~ 106 (138)
T 1bwv_S 65 LFEINACRKARSN-FYIKVVGFSSVRGIESTIISFIVNRPKHE 106 (138)
T ss_dssp HHHHHHHHHHCTT-SEEEEEEEECCTTTCEEEEEEEEECCSCC
T ss_pred HHHHHHHHHHCCC-CeEEEEEEeCCCceEEEEEEEEEECCCCC
Confidence 4789999999997 4556777765433 245888999888644
No 103
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=21.71 E-value=3e+02 Score=24.90 Aligned_cols=75 Identities=20% Similarity=0.222 Sum_probs=45.4
Q ss_pred eeCHHHHHHHHHH---HHHHHHHhcCCCCCCEEEEECCCC-CchHHHHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCe
Q 041055 78 RVTYAQLHRSIRS---LASGLYHALGVRKGDVVFVLAPNS-LLYPSICLAIFSLGAILSPANSINTESEIVKQVRDSGAK 153 (526)
Q Consensus 78 ~~Ty~el~~~~~~---lA~~L~~~~gl~~gd~V~i~~~n~-~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 153 (526)
.+++.+....... .-..|. ..++++|++|+|+...+ .-..++.+| ...|+.++.+. +.++ ..++++.++.
T Consensus 125 ~~~~~~aa~l~~~~~ta~~al~-~~~~~~g~~vlV~Ga~G~vG~~a~q~a-~~~Ga~vi~~~---~~~~-~~~~~~lGa~ 198 (321)
T 3tqh_A 125 KLSFLQAASLPTAGLTALQALN-QAEVKQGDVVLIHAGAGGVGHLAIQLA-KQKGTTVITTA---SKRN-HAFLKALGAE 198 (321)
T ss_dssp TSCHHHHHHSHHHHHHHHHHHH-HTTCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEE---CHHH-HHHHHHHTCS
T ss_pred CCCHHHHhhhhhHHHHHHHHHH-hcCCCCCCEEEEEcCCcHHHHHHHHHH-HHcCCEEEEEe---ccch-HHHHHHcCCC
Confidence 4677776543222 123443 37899999999997444 555555555 45687655442 3444 5566777887
Q ss_pred EEEEc
Q 041055 154 LIISA 158 (526)
Q Consensus 154 ~ii~~ 158 (526)
.++..
T Consensus 199 ~~i~~ 203 (321)
T 3tqh_A 199 QCINY 203 (321)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 76643
No 104
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=21.49 E-value=2.3e+02 Score=25.87 Aligned_cols=62 Identities=13% Similarity=0.166 Sum_probs=43.1
Q ss_pred cC-CCCCCEEEEECCCCCchHHHHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCeEEEEcch
Q 041055 99 LG-VRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASE 160 (526)
Q Consensus 99 ~g-l~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 160 (526)
.| +++|....+....+-.-..+.++|.+.|.-++.+-|...+..-...++..++++++++.+
T Consensus 60 ~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 60 KGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp TTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred cCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 45 456643344455666667777888899987766555444455667888999999998753
No 105
>4ap8_A Molybdopterin synthase catalytic subunit; transferase; 2.78A {Homo sapiens}
Probab=20.40 E-value=1.1e+02 Score=23.99 Aligned_cols=65 Identities=12% Similarity=0.179 Sum_probs=37.7
Q ss_pred ccccceEEecCeeeChHHHHHHHhcCCCcccEEE-EeeeCCCCCceEEEEEEeCCCCCCCHHHHHHH
Q 041055 456 DRIKELIKHNGYQVAPAELEAVLLSHPNILDAAV-IPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQF 521 (526)
Q Consensus 456 GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~v-v~~~~~~~~~~~~a~vv~~~~~~~~~~~l~~~ 521 (526)
.+.+|+|++.-..+++.++.+.+.+ |..--.+. +|.-.+..+...+..+.+.......+..+.+.
T Consensus 4 ~~~~d~i~it~e~l~~~~~~~~v~~-p~~GAvv~F~G~VR~~~~g~~V~~L~ye~y~~ma~~~l~~I 69 (135)
T 4ap8_A 4 EKSKDVINFTAEKLSVDEVSQLVIS-PLCGAISLFVGTTRNNFEGKKVISLEYEAYLPMAENEVRKI 69 (135)
T ss_dssp CCCCEEEEEESSCCCHHHHHHHTCC-TTCSEEEEEEEECCSEETTEEEEEEEEEEEETHHHHHHHHH
T ss_pred cCCCCeEEEEcCCCCHHHHHHHhcC-CCCCeEEEEEEEECCCCCCCcEEEEEEEecchHHHHHHHHH
Confidence 3567899999999999999887654 55433333 35433333334455555543334444444443
No 106
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=20.05 E-value=2.9e+02 Score=24.99 Aligned_cols=79 Identities=11% Similarity=0.074 Sum_probs=48.9
Q ss_pred eeCHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEECCCCCchHHHHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCeEEE
Q 041055 78 RVTYAQLHRSIRSLASGLYHALG-VRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLII 156 (526)
Q Consensus 78 ~~Ty~el~~~~~~lA~~L~~~~g-l~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 156 (526)
+-+|+.-... ..+. .+.+ .| +++|+.|.. ...+-.-..+.++|.+.|.-++.+-|...+..-...++..++++++
T Consensus 43 tgSfK~R~a~-~~l~-~a~~-~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 118 (313)
T 2q3b_A 43 ANSVKDRIGV-AMLQ-AAEQ-AGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELIL 118 (313)
T ss_dssp TSBTHHHHHH-HHHH-HHHH-TTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred CCcHHHHHHH-HHHH-HHHH-cCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEE
Confidence 4466654322 2222 2333 45 366666554 5555556667778889998776655544445566678899999999
Q ss_pred Ecch
Q 041055 157 SASE 160 (526)
Q Consensus 157 ~~~~ 160 (526)
++..
T Consensus 119 ~~~~ 122 (313)
T 2q3b_A 119 TPGA 122 (313)
T ss_dssp ECGG
T ss_pred eCCC
Confidence 8763
Done!