BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041057
(180 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZXU|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana
At5g01750
pdb|2Q4M|A Chain A, Ensemble Refinement Of The Crystal Structure Of Protein
From Arabidopsis Thaliana At5g01750
Length = 217
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 8/177 (4%)
Query: 1 RRPHVVNGGGFVVTDCSQKIIFRVDGCGVLGTKGELVVRHADGDAVVLIRRKGGVVEALS 60
R+ + G FV+TD + ++F+V V G + V+ G VV +R K +S
Sbjct: 44 RKXXSLTDGNFVITDVNGNLLFKVKE-PVFGLHDKRVLLDGSGTPVVTLREK-----XVS 97
Query: 61 IHKKWKGYAFDYEGSKKLVFTLKEPPSSSCLVRNSSIRISTETTARSSNFEVKGYFPDRD 120
H +W+ + + L++T+K S L + + + +F VKG + +R
Sbjct: 98 XHDRWQVFRGGSTDQRDLLYTVKRS-SXLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERS 156
Query: 121 CII-VDPSGNIVAQIGVKKEIQDLMESKDLYHIVVKPGIDQAFVVGVIATLDYIYGE 176
C++ S IVAQ K +Q + KD + + V P +D AF+ ++ LD + E
Sbjct: 157 CVVYAGESDAIVAQXHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNRE 213
>pdb|5GCN|A Chain A, Catalytic Domain Of Tetrahymena Gcn5 Histone
Acetyltransferase In Complex With Coenzyme A
Length = 166
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 35 ELVVRHADGDAVVLIRRKGGVVEALSIHKKWKGYAFDYEG 74
E ++ +AD A+ +++G E +KWKGY DY+G
Sbjct: 111 EYLLTYADNFAIGYFKKQGFTKEHRMPQEKWKGYIKDYDG 150
>pdb|1QST|A Chain A, Crystal Structure Of Tetrahymena Gcn5
Length = 160
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 35 ELVVRHADGDAVVLIRRKGGVVEALSIHKKWKGYAFDYEG 74
E ++ +AD A+ +++G E +KWKGY DY+G
Sbjct: 107 EYLLTYADNFAIGYFKKQGFTKEHRMPQEKWKGYIKDYDG 146
>pdb|1M1D|A Chain A, Tetrahymena Gcn5 With Bound Bisubstrate Analog Inhibitor
pdb|1M1D|C Chain C, Tetrahymena Gcn5 With Bound Bisubstrate Analog Inhibitor
pdb|1PU9|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And A 19-Residue Histone H3 Peptide
pdb|1PUA|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And A Phosphorylated, 19-Residue Histone H3 Peptide
Length = 163
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 35 ELVVRHADGDAVVLIRRKGGVVEALSIHKKWKGYAFDYEG 74
E ++ +AD A+ +++G E +KWKGY DY+G
Sbjct: 108 EYLLTYADNFAIGYFKKQGFTKEHRMPQEKWKGYIKDYDG 147
>pdb|1QSN|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And Histone H3 Peptide
pdb|1QSR|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Acetyl-
Coenzyme A
pdb|1Q2C|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And A 19- Residue Histone H4 Peptide
pdb|1Q2D|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And A 19-Residue P53 Peptide
Length = 162
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 35 ELVVRHADGDAVVLIRRKGGVVEALSIHKKWKGYAFDYEG 74
E ++ +AD A+ +++G E +KWKGY DY+G
Sbjct: 107 EYLLTYADNFAIGYFKKQGFTKEHRMPQEKWKGYIKDYDG 146
>pdb|1WJ4|A Chain A, Solution Structure Of The Ubx Domain Of Kiaa0794 Protein
Length = 124
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 24 VDGCGVLGTKGELVVRHADGDAVVLIRRKGGVVEALSIHKKWKGY 68
V+G V G K +L++R+ DG + + + AL H + KGY
Sbjct: 34 VEGIDVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSKGY 78
>pdb|3QWE|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Gem
Interacting Protein
Length = 279
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 48 LIRRKGGVVEALSIHKKWKGYA 69
LIR KGGV AL K W YA
Sbjct: 9 LIRTKGGVDAALEYAKTWSRYA 30
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,430,048
Number of Sequences: 62578
Number of extensions: 212290
Number of successful extensions: 425
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 416
Number of HSP's gapped (non-prelim): 15
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)