Query 041057
Match_columns 180
No_of_seqs 113 out of 432
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 05:01:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041057.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041057hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxu_A AT5G01750 protein; PFAM 100.0 1.3E-39 4.4E-44 262.4 19.3 169 1-178 44-215 (217)
2 1zxu_A AT5G01750 protein; PFAM 98.0 2.8E-05 9.5E-10 61.7 8.4 84 8-102 75-162 (217)
3 2fim_A Tubby related protein 1 82.3 15 0.00051 29.8 10.5 104 42-154 36-159 (276)
4 3c5n_A Tubby-related protein 1 82.2 16 0.00056 29.1 10.6 87 61-154 30-135 (246)
5 2v2f_A Penicillin binding prot 58.0 6.2 0.00021 20.0 1.9 13 12-24 8-20 (26)
6 2ln7_A LPXTG-SITE transpeptida 47.8 4.8 0.00016 29.4 0.5 19 8-26 79-97 (147)
7 4he6_A Peptidase family U32; u 45.5 30 0.001 22.6 4.2 34 14-49 15-50 (89)
8 2dho_A Isopentenyl-diphosphate 44.6 37 0.0013 26.3 5.4 58 8-69 26-93 (235)
9 3u88_M Histone-lysine N-methyl 41.0 17 0.00058 23.0 2.2 20 152-171 28-47 (75)
10 2pny_A Isopentenyl-diphosphate 39.9 44 0.0015 26.2 5.1 57 9-69 38-104 (246)
11 2kw8_A LPXTG-SITE transpeptida 35.9 9.7 0.00033 27.9 0.6 19 8-26 92-110 (158)
12 3g66_A Sortase C; pilus, trans 34.2 15 0.0005 28.6 1.4 20 8-27 132-151 (212)
13 3fn5_A Sortase A; sortase-fold 33.8 13 0.00046 28.2 1.1 40 8-48 102-142 (187)
14 1t2w_A Sortase; transpeptidase 33.0 20 0.00069 25.7 1.9 20 8-27 78-97 (145)
15 3o0p_A Sortase family protein; 32.8 19 0.00066 28.0 1.9 19 8-26 137-155 (216)
16 4g1j_A Sortase family protein; 32.2 17 0.00056 28.6 1.4 20 8-27 140-159 (222)
17 1hzt_A Isopentenyl diphosphate 32.2 41 0.0014 24.5 3.6 55 9-67 4-64 (190)
18 4g1h_A Sortase family protein; 32.1 17 0.00057 28.4 1.4 19 33-51 133-151 (215)
19 2h1z_A Hybrid atracotoxin; bet 29.7 39 0.0013 19.0 2.2 13 14-26 27-39 (39)
20 3rcc_A Sortase SRTA; sortase f 29.2 14 0.00048 27.2 0.5 20 8-27 84-103 (160)
21 4h3o_A Lectin; cadmium, plant 27.8 1.4E+02 0.0046 19.9 6.1 15 34-48 61-75 (105)
22 2z4i_A Copper homeostasis prot 25.3 1.1E+02 0.0038 24.1 5.1 11 36-46 97-107 (233)
23 3my2_A Lipopolysaccharide expo 24.3 66 0.0023 23.7 3.5 46 8-53 28-84 (175)
24 1smp_I Erwinia chrysanthemi in 22.8 1.9E+02 0.0063 19.7 5.7 31 33-72 62-92 (101)
25 3isy_A Bsupi, intracellular pr 22.5 46 0.0016 23.5 2.1 17 10-26 45-61 (120)
26 2fkb_A Putative nudix hydrolas 22.4 1.7E+02 0.0057 20.6 5.4 56 8-67 9-69 (180)
27 3osv_A Flagellar basal-BODY RO 21.8 64 0.0022 22.8 2.9 16 11-26 41-56 (138)
28 1q27_A Putative nudix hydrolas 21.6 44 0.0015 23.7 1.9 40 9-48 7-51 (171)
29 3mez_B Mannose-specific lectin 20.9 2E+02 0.0067 19.2 5.6 22 4-25 28-50 (113)
30 3rbj_A Sortase C1, sortase fam 20.5 37 0.0013 26.7 1.4 20 8-27 151-170 (230)
31 3c12_A FLGD, flagellar protein 20.1 74 0.0025 22.5 2.9 15 11-25 43-57 (138)
No 1
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=100.00 E-value=1.3e-39 Score=262.41 Aligned_cols=169 Identities=27% Similarity=0.520 Sum_probs=128.7
Q ss_pred CcCeEEEcCCEEEEcCCCCEEEEEeccccCCCCCeEEEECCCCCeEEEEEEcCceeeeecccceeEEEEecCCCCceeEE
Q 041057 1 RRPHVVNGGGFVVTDCSQKIIFRVDGCGVLGTKGELVVRHADGDAVVLIRRKGGVVEALSIHKKWKGYAFDYEGSKKLVF 80 (180)
Q Consensus 1 ~k~l~~~gd~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~G~~L~~i~~k~~~~~~~sl~~~w~v~~~~~~~~~~~~f 80 (180)
+|+++|++++|+|+|++|+++|+|+|+ .+++++++.|+|++|++|++|++| .++++++|++|++++.+.++++|
T Consensus 44 qk~~~~~~~~f~V~D~~G~~vf~V~~~-~~~~~~~~~l~D~~G~~l~~i~rk-----~~~~~~~~~v~~~~~~~~~~~i~ 117 (217)
T 1zxu_A 44 RKMMSLTDGNFVITDVNGNLLFKVKEP-VFGLHDKRVLLDGSGTPVVTLREK-----MVSMHDRWQVFRGGSTDQRDLLY 117 (217)
T ss_dssp CC-----CCCEEEEETTSCEEEEEECS-STTCCSEEEEECTTSCEEEEEEC-----------CEEEEEETTCCCGGGEEE
T ss_pred EEEeEeeCCCEEEEeCCCCEEEEEEcc-ccCCCCEEEEECCCCCEEEEEEcc-----ccccCcEEEEEcCCCCCCCcEEE
Confidence 478999999999999999999999997 678999999999999999999999 58999999999988655557999
Q ss_pred EEEcCCCCcceeecceEEEEEecC--CCcceEEEEeecCCcceEEEcCC-CCEEEEEEeeeeeeeeeeeeeeEEEEEeCC
Q 041057 81 TLKEPPSSSCLVRNSSIRISTETT--ARSSNFEVKGYFPDRDCIIVDPS-GNIVAQIGVKKEIQDLMESKDLYHIVVKPG 157 (180)
Q Consensus 81 tvkk~~~~~~~~~k~~~~v~l~~~--~~~~~~~v~G~~~~~~~~I~~~~-g~~VAeV~rk~~~~~~~~g~dty~v~V~pg 157 (180)
+||+++. ++++++++|+++++ ++.++|+|+|+|++++|+|++++ |++||+|+||+++.++++++|+|.|+|+|+
T Consensus 118 ~vrk~~~---~~~~~~~~V~~~~~~~~~~~~~~I~G~~~~~~f~I~~~~~~~~Va~I~kk~~~~~~~~~~D~y~l~V~p~ 194 (217)
T 1zxu_A 118 TVKRSSM---LQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPN 194 (217)
T ss_dssp EEEC----------CCEEEEETTCCC-CCCSEEEESCTTTTCCEEEETTTCCEEEEEEEC--------CBCSEEEEECTT
T ss_pred EEEEecc---ccCCCeEEEEECCCCCCCceEEEEEEeEeCCEEEEEECCCCEEEEEEEeeeeccccccCCcEEEEEECCC
Confidence 9998842 33588899988764 23578999999999999999975 799999999988888999999999999999
Q ss_pred CCHHHHHHHHHHhhhhcCCcC
Q 041057 158 IDQAFVVGVIATLDYIYGEST 178 (180)
Q Consensus 158 vD~ali~alvv~lD~i~~~~~ 178 (180)
+|.+|++|+++++|+|+++++
T Consensus 195 ~D~aliialvv~iD~~~~~~~ 215 (217)
T 1zxu_A 195 VDYAFIASLVVILDDVNREDR 215 (217)
T ss_dssp SBHHHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999875
No 2
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=97.96 E-value=2.8e-05 Score=61.67 Aligned_cols=84 Identities=14% Similarity=0.130 Sum_probs=55.5
Q ss_pred cCCEEEEcCCCCEEEEEeccccCCCCCeEEEECCCCC----eEEEEEEcCceeeeecccceeEEEEecCCCCceeEEEEE
Q 041057 8 GGGFVVTDCSQKIIFRVDGCGVLGTKGELVVRHADGD----AVVLIRRKGGVVEALSIHKKWKGYAFDYEGSKKLVFTLK 83 (180)
Q Consensus 8 gd~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~G~----~L~~i~~k~~~~~~~sl~~~w~v~~~~~~~~~~~~ftvk 83 (180)
++.+.|+|.+|++++++.-+ .++++.+..++++.+. +|++|+++. ++++.+.|+|+.++...+..+.++|+
T Consensus 75 ~~~~~l~D~~G~~l~~i~rk-~~~~~~~~~v~~~~~~~~~~~i~~vrk~~----~~~~~~~~~V~~~~~~~~~~~~~~I~ 149 (217)
T 1zxu_A 75 HDKRVLLDGSGTPVVTLREK-MVSMHDRWQVFRGGSTDQRDLLYTVKRSS----MLQLKTKLDVFLGHNKDEKRCDFRVK 149 (217)
T ss_dssp CSEEEEECTTSCEEEEEEC-------CEEEEEETTCCCGGGEEEEEEC-----------CCEEEEETTCCC-CCCSEEEE
T ss_pred CCEEEEECCCCCEEEEEEcc-ccccCcEEEEEcCCCCCCCcEEEEEEEec----cccCCCeEEEEECCCCCCCceEEEEE
Confidence 46789999999999999996 6788999999998765 799999984 46789999999875433345678888
Q ss_pred cCCCCcceeecceEEEEEe
Q 041057 84 EPPSSSCLVRNSSIRISTE 102 (180)
Q Consensus 84 k~~~~~~~~~k~~~~v~l~ 102 (180)
.+. + ...++|.-.
T Consensus 150 G~~----~--~~~f~I~~~ 162 (217)
T 1zxu_A 150 GSW----L--ERSCVVYAG 162 (217)
T ss_dssp SCT----T--TTCCEEEET
T ss_pred EeE----e--CCEEEEEEC
Confidence 764 3 445666543
No 3
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=82.28 E-value=15 Score=29.84 Aligned_cols=104 Identities=9% Similarity=0.087 Sum_probs=56.0
Q ss_pred CCCeEEEEEE-cCceeeeecccceeEEEEecCCCCceeEEEEEcCCCCcceeecceEEEEEecC-----CCcceEEEEee
Q 041057 42 DGDAVVLIRR-KGGVVEALSIHKKWKGYAFDYEGSKKLVFTLKEPPSSSCLVRNSSIRISTETT-----ARSSNFEVKGY 115 (180)
Q Consensus 42 ~G~~L~~i~~-k~~~~~~~sl~~~w~v~~~~~~~~~~~~ftvkk~~~~~~~~~k~~~~v~l~~~-----~~~~~~~v~G~ 115 (180)
.|..-+.|+| |.+. .-++.++|..|..++ .+..++..||... +....|-|++... ++..-=+++.|
T Consensus 36 ~~~iqC~I~R~k~g~--~~g~yp~y~L~l~~~--~~~fLLaarK~k~----~~ts~YiIS~d~~dlsr~s~~yvGKLrSN 107 (276)
T 2fim_A 36 GRTVRCRLTRDKKGM--DRGMYPSYFLHLDTE--KKVFLLAGRKRKR----SKTANYLISIDPTNLSRGGENFIGKLRSN 107 (276)
T ss_dssp TCCEEEEEEEEC---------CCEEEEEECSS--SCEEEEEEEECTT----CSSCEEEEESCTTC------CEEEEEEEC
T ss_pred CCeEEEEEEEeCCCC--CCCCceEEEEEEeCC--CCEEEEEEEeccC----CCCceEEEEecchhcccCCceEEEEEEEc
Confidence 3555667755 3210 013568999998642 3456767776541 1245688887653 12333467789
Q ss_pred cCCcceEEEcCC--------------CCEEEEEEeeeeeeeeeeeeeeEEEEE
Q 041057 116 FPDRDCIIVDPS--------------GNIVAQIGVKKEIQDLMESKDLYHIVV 154 (180)
Q Consensus 116 ~~~~~~~I~~~~--------------g~~VAeV~rk~~~~~~~~g~dty~v~V 154 (180)
|++..|+|+|.. ...+|.|.-+.+..+. .|.-...+.+
T Consensus 108 flGtkF~iyD~G~~p~~~~s~~~~~~r~el~~V~Ye~nvlg~-~gPR~m~v~i 159 (276)
T 2fim_A 108 LLGNRFTVFDNGQNPQRGYSTNVASLRQELAAVIYETNVLGF-RGPRRMTVII 159 (276)
T ss_dssp SSSSEEEEECSSBCGGGCTTSCGGGBCCEEEEEEEC----------CCEEEEE
T ss_pred cCCCEEEEECCCCCcccccCcccccccEEEEEEEEEecccCC-CCCeEEEEEe
Confidence 999999999842 1668888776332111 2444555555
No 4
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=82.19 E-value=16 Score=29.07 Aligned_cols=87 Identities=7% Similarity=0.063 Sum_probs=51.9
Q ss_pred ccceeEEEEecCCCCceeEEEEEcCCCCcceeecceEEEEEecC-----CCcceEEEEeecCCcceEEEcCC--------
Q 041057 61 IHKKWKGYAFDYEGSKKLVFTLKEPPSSSCLVRNSSIRISTETT-----ARSSNFEVKGYFPDRDCIIVDPS-------- 127 (180)
Q Consensus 61 l~~~w~v~~~~~~~~~~~~ftvkk~~~~~~~~~k~~~~v~l~~~-----~~~~~~~v~G~~~~~~~~I~~~~-------- 127 (180)
+.++|..|..++ .+..+...||... +....|-|++... ++..-=+++.|+++..|.|+|..
T Consensus 30 ~yp~y~l~~~~~--~~~fLlaark~~~----~~~s~YiIS~d~~dlsr~s~~yvGKLrsNf~Gt~F~iyD~g~~p~~~~s 103 (246)
T 3c5n_A 30 MYPSYFLHLDTE--KKVFLLAGRKRKR----SKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYS 103 (246)
T ss_dssp CCCEEEEEESSS--SCCEEEEEEECTT----CSSCEEEEESCTTC------CEEEEEEECSSSSEEEEECSCBCGGGCTT
T ss_pred CceEEEEEEeCC--CcEEEEeeeeccC----CCCceEEEEeCccccccCCceEEEEEEEccCCCEEEEECCCCCcccccC
Confidence 568999887542 2345667776541 1245688887654 12333567789999999999842
Q ss_pred ------CCEEEEEEeeeeeeeeeeeeeeEEEEE
Q 041057 128 ------GNIVAQIGVKKEIQDLMESKDLYHIVV 154 (180)
Q Consensus 128 ------g~~VAeV~rk~~~~~~~~g~dty~v~V 154 (180)
...+|.|.-+.+..+. .|.-...+.+
T Consensus 104 ~~~~~~r~el~~v~Ye~n~l~~-~gPR~m~v~i 135 (246)
T 3c5n_A 104 TNVASLRQELAAVIYETNVLGF-RGPRRMTVII 135 (246)
T ss_dssp SCGGGBCCEEEEEEECCCCCC----CCCEEEEE
T ss_pred cccccccEEEEEEEEEecccCC-CCCeEEEEEe
Confidence 1678888776432111 2444555555
No 5
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=57.96 E-value=6.2 Score=19.95 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=9.6
Q ss_pred EEEcCCCCEEEEE
Q 041057 12 VVTDCSQKIIFRV 24 (180)
Q Consensus 12 ~V~D~~G~~vf~V 24 (180)
.|||.+|+++..+
T Consensus 8 ~IYD~~g~~i~~l 20 (26)
T 2v2f_A 8 KIYDNKNQLIADL 20 (26)
T ss_pred EEEeCCCCEeeec
Confidence 4777777777766
No 6
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=47.75 E-value=4.8 Score=29.36 Aligned_cols=19 Identities=5% Similarity=0.153 Sum_probs=11.0
Q ss_pred cCCEEEEcCCCCEEEEEec
Q 041057 8 GGGFVVTDCSQKIIFRVDG 26 (180)
Q Consensus 8 gd~f~V~D~~G~~vf~V~g 26 (180)
||.+.|.+.++...|+|+.
T Consensus 79 GD~i~v~~~~~~~~Y~V~~ 97 (147)
T 2ln7_A 79 KDTLVLEYDNKTYTYEIQK 97 (147)
T ss_dssp TCEEEEEETTEEEEEEEEE
T ss_pred CCEEEEEECCcEEEEEEEe
Confidence 4555555555556666655
No 7
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=45.53 E-value=30 Score=22.62 Aligned_cols=34 Identities=9% Similarity=-0.036 Sum_probs=25.0
Q ss_pred EcCC-CCEEEEEeccccCCCCCeEEEECCCC-CeEEEE
Q 041057 14 TDCS-QKIIFRVDGCGVLGTKGELVVRHADG-DAVVLI 49 (180)
Q Consensus 14 ~D~~-G~~vf~V~g~~~~s~~~~~~l~D~~G-~~L~~i 49 (180)
+|.+ |.....++++ |+.++.+.++-+.| +.-++|
T Consensus 15 ~~~~~g~~~ie~rN~--f~~GD~iEi~~P~g~~~~~~v 50 (89)
T 4he6_A 15 YDPETGIATVQQRNH--FRPGDEVEFFGPEIENFTQVI 50 (89)
T ss_dssp EETTTTEEEEEESSC--BCTTCEEEEESTTSCCEEEEC
T ss_pred EeCCCCEEEEEEcCC--cCCCCEEEEEcCCCCcEEEEe
Confidence 3444 7777788885 78899999999999 444554
No 8
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=44.58 E-value=37 Score=26.30 Aligned_cols=58 Identities=7% Similarity=0.047 Sum_probs=35.7
Q ss_pred cCCEEEEcCCCCEEEEEeccccC-------CCCC---eEEEECCCCCeEEEEEEcCceeeeecccceeEEEE
Q 041057 8 GGGFVVTDCSQKIIFRVDGCGVL-------GTKG---ELVVRHADGDAVVLIRRKGGVVEALSIHKKWKGYA 69 (180)
Q Consensus 8 gd~f~V~D~~G~~vf~V~g~~~~-------s~~~---~~~l~D~~G~~L~~i~~k~~~~~~~sl~~~w~v~~ 69 (180)
.+-+.|+|++|+++.++.-.... +..+ ...+.|.+|+.|++-|... ...+.+.|..--
T Consensus 26 ~E~~~lvd~~~~~~G~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLq~R~~~----k~~~pg~W~~p~ 93 (235)
T 2dho_A 26 AEMCILIDENDNKIGAETKKNCHLNENIEKGLLHRAFSVFLFNTENKLLLQQRSDA----KITFPGCFTNTC 93 (235)
T ss_dssp CCEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTT----CSSSTTCEESSE
T ss_pred CcEEEEEcCCCCEEEEEEhHHhccccccCCCceEEEEEEEEEcCCCEEEEEEecCc----CCCCCCcEEecc
Confidence 34589999999999998443111 1112 2357888998887644332 134567888543
No 9
>3u88_M Histone-lysine N-methyltransferase MLL; menin, MEN1, MLL, JUND, ledgf, TPR, transcription; HET: CHD 0BR GGB; 3.00A {Homo sapiens}
Probab=40.96 E-value=17 Score=23.04 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=16.1
Q ss_pred EEEeCCCCHHHHHHHHHHhh
Q 041057 152 IVVKPGIDQAFVVGVIATLD 171 (180)
Q Consensus 152 v~V~pgvD~ali~alvv~lD 171 (180)
+-|.||+|+||-++.+|--.
T Consensus 28 lgvgpGFDAALqvSa~Ig~n 47 (75)
T 3u88_M 28 LRVGPGFDAALQVSAAIGTN 47 (75)
T ss_dssp CEECCCCCHHHHHHHHHHHH
T ss_pred HccCcChhHHHHHHHHHHHH
Confidence 56899999999888776543
No 10
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=39.86 E-value=44 Score=26.16 Aligned_cols=57 Identities=12% Similarity=0.114 Sum_probs=35.2
Q ss_pred CCEEEEcCCCCEEEEEeccccC-------CCCC---eEEEECCCCCeEEEEEEcCceeeeecccceeEEEE
Q 041057 9 GGFVVTDCSQKIIFRVDGCGVL-------GTKG---ELVVRHADGDAVVLIRRKGGVVEALSIHKKWKGYA 69 (180)
Q Consensus 9 d~f~V~D~~G~~vf~V~g~~~~-------s~~~---~~~l~D~~G~~L~~i~~k~~~~~~~sl~~~w~v~~ 69 (180)
+-+.|+|++|+++.++.-.... +..+ ...+.|.+|+.|++-|... ...+.+.|..--
T Consensus 38 E~~~lvd~~~~~iG~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLqrRs~~----K~~~pG~W~~p~ 104 (246)
T 2pny_A 38 EMLIVVDENDKVIGADTKRNCHLNENIEKGLLHRAFSVVLFNTKNRILIQQRSDT----KVTFPGYFTDSC 104 (246)
T ss_dssp CEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTT----CSSSTTCBCCSE
T ss_pred ceEEEEcCCCCEEEEEEhHHhccccccCCCcEEEEEEEEEEeCCCEEEEEEecCC----CCCCCCceEecc
Confidence 4589999999999997543111 1112 2357888998887644332 134566787533
No 11
>2kw8_A LPXTG-SITE transpeptidase family protein; sortase, SRTA, protein binding; NMR {Bacillus anthracis}
Probab=35.95 E-value=9.7 Score=27.95 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=9.7
Q ss_pred cCCEEEEcCCCCEEEEEec
Q 041057 8 GGGFVVTDCSQKIIFRVDG 26 (180)
Q Consensus 8 gd~f~V~D~~G~~vf~V~g 26 (180)
||.+.|.+.++...|+|.+
T Consensus 92 Gd~i~v~~~~~~~~Y~V~~ 110 (158)
T 2kw8_A 92 GDKIYLYDNENEYEYAVTG 110 (158)
T ss_dssp TCEEEEECSSEEEEEEEEE
T ss_pred CCEEEEEECCcEEEEEEEE
Confidence 3445555555555555554
No 12
>3g66_A Sortase C; pilus, transferase; HET: MES; 1.70A {Streptococcus pneumoniae} PDB: 3g69_A*
Probab=34.24 E-value=15 Score=28.63 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=11.9
Q ss_pred cCCEEEEcCCCCEEEEEecc
Q 041057 8 GGGFVVTDCSQKIIFRVDGC 27 (180)
Q Consensus 8 gd~f~V~D~~G~~vf~V~g~ 27 (180)
||.+.|++.+|...|+|++.
T Consensus 132 GD~I~v~~~~~~~~Y~V~~~ 151 (212)
T 3g66_A 132 GDIFYLHVLDQVLAYQVDQI 151 (212)
T ss_dssp TCEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEECCeEEEEEEeeE
Confidence 45566666666666666653
No 13
>3fn5_A Sortase A; sortase-fold, hydrolase; HET: EPE; 1.50A {Streptococcus pyogenes serotype M1} PDB: 3fn6_A 3fn7_A
Probab=33.84 E-value=13 Score=28.23 Aligned_cols=40 Identities=15% Similarity=0.037 Sum_probs=23.0
Q ss_pred cCCEEEEcCCCCEEEEEeccccCCCCCeEEEECC-CCCeEEE
Q 041057 8 GGGFVVTDCSQKIIFRVDGCGVLGTKGELVVRHA-DGDAVVL 48 (180)
Q Consensus 8 gd~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~-~G~~L~~ 48 (180)
||.+.|.+.++...|+|++.. .--+.++.++++ .|++.+|
T Consensus 102 GD~I~v~~~~~~~~Y~V~~~~-vV~p~d~~vl~~~~g~~~LT 142 (187)
T 3fn5_A 102 GMSIYLTDKEKIYEYIIKDVF-TVAPERVDVIDDTAGLKEVT 142 (187)
T ss_dssp TCEEEEECSSEEEEEEEEEEE-EECTTCGGGGSCCTTCCEEE
T ss_pred CCEEEEEECCeEEEEEEeeEE-EECcccceeeccCCCCCEEE
Confidence 677777777777888887752 212333333443 3555554
No 14
>1t2w_A Sortase; transpeptidase, beta barrel, hydrolase; 1.80A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1t2o_A 1ija_A 2kid_A* 1t2p_A
Probab=32.97 E-value=20 Score=25.69 Aligned_cols=20 Identities=5% Similarity=0.081 Sum_probs=14.4
Q ss_pred cCCEEEEcCCCCEEEEEecc
Q 041057 8 GGGFVVTDCSQKIIFRVDGC 27 (180)
Q Consensus 8 gd~f~V~D~~G~~vf~V~g~ 27 (180)
||.+.|++.++...|+|.+.
T Consensus 78 Gd~i~v~~~~~~~~Y~V~~~ 97 (145)
T 1t2w_A 78 GSMVYFKVGNETRKYKMTSI 97 (145)
T ss_dssp TCEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEECCEEEEEEEEEE
Confidence 56677777777777777774
No 15
>3o0p_A Sortase family protein; PILI assembly, PILI subunits, transferase ,hydrolas transferase, hydrolase; 1.30A {Streptococcus agalactiae}
Probab=32.76 E-value=19 Score=28.03 Aligned_cols=19 Identities=26% Similarity=0.606 Sum_probs=10.3
Q ss_pred cCCEEEEcCCCCEEEEEec
Q 041057 8 GGGFVVTDCSQKIIFRVDG 26 (180)
Q Consensus 8 gd~f~V~D~~G~~vf~V~g 26 (180)
||.+.|.+.++...|+|++
T Consensus 137 GD~I~v~~~~~~~~Y~V~~ 155 (216)
T 3o0p_A 137 GDKFYIQNIKETIAYQVDQ 155 (216)
T ss_dssp TCEEEEECSSCEEEEEEEE
T ss_pred CCEEEEEECCEEEEEEEee
Confidence 4455555555555555555
No 16
>4g1j_A Sortase family protein; cysteine protease, extracellular, transferase; 1.75A {Streptococcus agalactiae serogroup V} PDB: 3tb7_A 3rbi_A 3rbk_A 3tbe_A 3rbj_A
Probab=32.23 E-value=17 Score=28.56 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=13.2
Q ss_pred cCCEEEEcCCCCEEEEEecc
Q 041057 8 GGGFVVTDCSQKIIFRVDGC 27 (180)
Q Consensus 8 gd~f~V~D~~G~~vf~V~g~ 27 (180)
||.+.|.+.++...|+|++.
T Consensus 140 GD~I~v~~~~~~~~Y~V~~~ 159 (222)
T 4g1j_A 140 GDRFYIEHIGGKIAYQVDQI 159 (222)
T ss_dssp TCEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEECCEEEEEEEeeE
Confidence 56666666666666777664
No 17
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=32.18 E-value=41 Score=24.48 Aligned_cols=55 Identities=9% Similarity=0.029 Sum_probs=18.7
Q ss_pred CCEEEEcCCCCEEEEEeccccC-C-----CCCeEEEECCCCCeEEEEEEcCceeeeecccceeEE
Q 041057 9 GGFVVTDCSQKIIFRVDGCGVL-G-----TKGELVVRHADGDAVVLIRRKGGVVEALSIHKKWKG 67 (180)
Q Consensus 9 d~f~V~D~~G~~vf~V~g~~~~-s-----~~~~~~l~D~~G~~L~~i~~k~~~~~~~sl~~~w~v 67 (180)
.-++|+|++|+++..+.-.... . ..-...+.+.+|+.|+.-|... .-.+.+.|..
T Consensus 4 E~~~v~d~~~~~~g~~~r~~~~~~~~~~~~~v~~~i~~~~g~vLl~~R~~~----~~~~~g~w~~ 64 (190)
T 1hzt_A 4 EHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALS----KKAWPGVWTN 64 (190)
T ss_dssp ---------------------------CEECEEEEEECTTCCEEEEEECTT----CSSSTTCEEE
T ss_pred eEEEEECCCCCEeeeEEHhhhcccCCceEEEEEEEEEcCCCEEEEEEeCCC----CCCCCCcccC
Confidence 3578999999998876553211 0 1124567888898777544331 1334678887
No 18
>4g1h_A Sortase family protein; cysteine protease, extracellular, transferase; 1.80A {Streptococcus agalactiae serogroup V}
Probab=32.11 E-value=17 Score=28.35 Aligned_cols=19 Identities=5% Similarity=-0.067 Sum_probs=9.1
Q ss_pred CCeEEEECCCCCeEEEEEE
Q 041057 33 KGELVVRHADGDAVVLIRR 51 (180)
Q Consensus 33 ~~~~~l~D~~G~~L~~i~~ 51 (180)
++.+.|.+.+|.-.++|..
T Consensus 133 GD~I~v~~~~~~~~Y~V~~ 151 (215)
T 4g1h_A 133 GQIFYVTNIKETLAYKVVS 151 (215)
T ss_dssp TCEEEEECSSCEEEEEEEE
T ss_pred CCEEEEEECCEEEEEEEee
Confidence 4455555555544444443
No 19
>2h1z_A Hybrid atracotoxin; beta-hairpin, cystine knot; NMR {Hadronyche versuta}
Probab=29.72 E-value=39 Score=18.97 Aligned_cols=13 Identities=0% Similarity=0.143 Sum_probs=10.6
Q ss_pred EcCCCCEEEEEec
Q 041057 14 TDCSQKIIFRVDG 26 (180)
Q Consensus 14 ~D~~G~~vf~V~g 26 (180)
.+++|+.|+|.+.
T Consensus 27 ~NeNGntV~rC~~ 39 (39)
T 2h1z_A 27 RNENGHTVYYCRA 39 (39)
T ss_dssp ECSSCCEEEEEEC
T ss_pred eccCCCEEEeecC
Confidence 4689999999863
No 20
>3rcc_A Sortase SRTA; sortase fold, beta-barrel, housekeeping sortase, surface Pro anchoring, PILI anchoring, PILI biogenesis; 3.10A {Streptococcus agalactiae serogroup V}
Probab=29.24 E-value=14 Score=27.22 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=11.4
Q ss_pred cCCEEEEcCCCCEEEEEecc
Q 041057 8 GGGFVVTDCSQKIIFRVDGC 27 (180)
Q Consensus 8 gd~f~V~D~~G~~vf~V~g~ 27 (180)
||.+.|++.++...|+|++.
T Consensus 84 GD~i~v~~~~~~~~Y~V~~~ 103 (160)
T 3rcc_A 84 GMKVYLTDKSKVYTYTITEI 103 (160)
T ss_dssp TCEECCBCSSCBCCEEEEEE
T ss_pred CCEEEEEECCEEEEEEEeeE
Confidence 45555555556666666553
No 21
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=27.77 E-value=1.4e+02 Score=19.87 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=8.8
Q ss_pred CeEEEECCCCCeEEE
Q 041057 34 GELVVRHADGDAVVL 48 (180)
Q Consensus 34 ~~~~l~D~~G~~L~~ 48 (180)
..++|+|++|+++.+
T Consensus 61 GnLvL~d~~~~~vWs 75 (105)
T 4h3o_A 61 GNFVVYDSSGRSLWA 75 (105)
T ss_dssp SCEEEECTTCCEEEE
T ss_pred ccEEEECCCcEEEEE
Confidence 446666666666553
No 22
>2z4i_A Copper homeostasis protein CUTF; outer memblane lipoprotein, beta barrel, OB-fold, 3D domain swapping, signaling protein activator; HET: P6G; 2.60A {Escherichia coli} PDB: 2z4h_A*
Probab=25.27 E-value=1.1e+02 Score=24.07 Aligned_cols=11 Identities=18% Similarity=0.492 Sum_probs=6.4
Q ss_pred EEEECCCCCeE
Q 041057 36 LVVRHADGDAV 46 (180)
Q Consensus 36 ~~l~D~~G~~L 46 (180)
+.++|.+|+++
T Consensus 97 L~mLD~~G~~i 107 (233)
T 2z4i_A 97 LEMLDREGNPI 107 (233)
T ss_dssp EEEECTTSCBC
T ss_pred EEEECCCCCcC
Confidence 55555566555
No 23
>3my2_A Lipopolysaccharide export system protein LPTC; lipopolysaccharide export pathway, structural genomics scottish structural proteomics facility; 2.20A {Escherichia coli} PDB: 4b54_A
Probab=24.32 E-value=66 Score=23.67 Aligned_cols=46 Identities=13% Similarity=0.007 Sum_probs=22.6
Q ss_pred cCCE--EEEcCCCCEEEEEeccccCC---------CCCeEEEECCCCCeEEEEEEcC
Q 041057 8 GGGF--VVTDCSQKIIFRVDGCGVLG---------TKGELVVRHADGDAVVLIRRKG 53 (180)
Q Consensus 8 gd~f--~V~D~~G~~vf~V~g~~~~s---------~~~~~~l~D~~G~~L~~i~~k~ 53 (180)
..+| +.||++|++.|++.+..+.- -...+.++|..|.+..+|+-+.
T Consensus 28 ~~~~~~~~~d~~G~l~~~l~A~~~~hy~~~~~t~~~~P~~~~y~~~~~~~w~i~A~~ 84 (175)
T 3my2_A 28 SEHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADK 84 (175)
T ss_dssp ---------------CEEEECSSEEEETTTTEEEEESCEEEEECTTCCEEEEEECSE
T ss_pred EEeeEEEEECCCCCEEEEEEeeeEEEecCCCCEEEeccEEEEECCCCceeEEEEeCe
Confidence 3445 36899999999999963211 1446677887777888887764
No 24
>1smp_I Erwinia chrysanthemi inhibitor; complex (metalloprotease/inhibitor); 2.30A {Erwinia chrysanthemi} SCOP: b.61.2.1
Probab=22.83 E-value=1.9e+02 Score=19.72 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=24.4
Q ss_pred CCeEEEECCCCCeEEEEEEcCceeeeecccceeEEEEecC
Q 041057 33 KGELVVRHADGDAVVLIRRKGGVVEALSIHKKWKGYAFDY 72 (180)
Q Consensus 33 ~~~~~l~D~~G~~L~~i~~k~~~~~~~sl~~~w~v~~~~~ 72 (180)
++-+.|+|++|+-|...-|. ...|+...+++
T Consensus 62 PDGi~L~~~dGs~l~ff~r~---------~~~y~~~~~~G 92 (101)
T 1smp_I 62 PDGLTLTQADGSAVAFFSRN---------RDRYEHKLVDG 92 (101)
T ss_dssp SSEEEEECTTSCEEEEEEEE---------TTEEEEECTTC
T ss_pred CCEEEEEcCCCCEEEEeccc---------CCcceeecCCC
Confidence 67899999999999987666 35788877654
No 25
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=22.53 E-value=46 Score=23.51 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=10.2
Q ss_pred CEEEEcCCCCEEEEEec
Q 041057 10 GFVVTDCSQKIIFRVDG 26 (180)
Q Consensus 10 ~f~V~D~~G~~vf~V~g 26 (180)
+|.|+|.+|+.+|+-..
T Consensus 45 Df~v~d~~G~~VwrwS~ 61 (120)
T 3isy_A 45 ELVVYDSEHKERYRYSK 61 (120)
T ss_dssp EEEEECTTCCEEEETTT
T ss_pred EEEEECCCCCEEEEccc
Confidence 45666666666665444
No 26
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=22.41 E-value=1.7e+02 Score=20.61 Aligned_cols=56 Identities=11% Similarity=0.014 Sum_probs=33.3
Q ss_pred cCCEEEEcCCCCEEEEEeccccC--CC---CCeEEEECCCCCeEEEEEEcCceeeeecccceeEE
Q 041057 8 GGGFVVTDCSQKIIFRVDGCGVL--GT---KGELVVRHADGDAVVLIRRKGGVVEALSIHKKWKG 67 (180)
Q Consensus 8 gd~f~V~D~~G~~vf~V~g~~~~--s~---~~~~~l~D~~G~~L~~i~~k~~~~~~~sl~~~w~v 67 (180)
..-++|+|.+|+++....-.... .. .--..+.|.+|+.|+.-|... .-.+.+.|..
T Consensus 9 ~E~~~i~d~~~~~~g~~~r~~~~~~~~~~~~~~v~i~~~~~~vLl~~R~~~----~~~~~g~w~l 69 (180)
T 2fkb_A 9 TEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTET----KDFLPGMLDA 69 (180)
T ss_dssp CCEEEEECTTSCEEEEEEHHHHHHHTCCEEEEEEEEECSSSCEEEEEECSS----CSSSTTCEES
T ss_pred CeeEEEECCCCCEeeEEEHHHhhccCceeeEEEEEEECCCCEEEEEECCCC----CccCCCcEEe
Confidence 34589999999999888643111 11 123466788898887433331 0122456765
No 27
>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}
Probab=21.78 E-value=64 Score=22.80 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=12.7
Q ss_pred EEEEcCCCCEEEEEec
Q 041057 11 FVVTDCSQKIIFRVDG 26 (180)
Q Consensus 11 f~V~D~~G~~vf~V~g 26 (180)
.+|+|++|++|.+++-
T Consensus 41 v~I~d~~G~~V~t~~~ 56 (138)
T 3osv_A 41 VNVYDDKGTVVNRINL 56 (138)
T ss_dssp EEEECTTSCEEEEEEE
T ss_pred EEEEcCCCCEEEEEEc
Confidence 5688888888888863
No 28
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=21.55 E-value=44 Score=23.68 Aligned_cols=40 Identities=5% Similarity=0.052 Sum_probs=25.4
Q ss_pred CCEEEEcCCCCEEEEEecccc---CC--CCCeEEEECCCCCeEEE
Q 041057 9 GGFVVTDCSQKIIFRVDGCGV---LG--TKGELVVRHADGDAVVL 48 (180)
Q Consensus 9 d~f~V~D~~G~~vf~V~g~~~---~s--~~~~~~l~D~~G~~L~~ 48 (180)
+-++|+|.+|+++..+.-... .. ..-...+.+.+|+.|+.
T Consensus 7 E~~~~~d~~~~~~g~~~r~~~~l~~~~~~~v~v~i~~~~~~vLl~ 51 (171)
T 1q27_A 7 ERLDLVNERDEVVGQILRTDPALRWERVRVVNAFLRNSQGQLWIP 51 (171)
T ss_dssp SEEEEESSSSCEEEEEESSCTTSCTTSCEEEEEEEEETTTEEEEC
T ss_pred eeeeeecCCCCEeceEEhhhhccccccceEEEEEEECCCCeEEEE
Confidence 448899999999988665321 10 11134567888876664
No 29
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=20.86 E-value=2e+02 Score=19.25 Aligned_cols=22 Identities=23% Similarity=0.219 Sum_probs=10.2
Q ss_pred eEEEcC-CEEEEcCCCCEEEEEe
Q 041057 4 HVVNGG-GFVVTDCSQKIIFRVD 25 (180)
Q Consensus 4 l~~~gd-~f~V~D~~G~~vf~V~ 25 (180)
|.+..| ...++|.+...++...
T Consensus 28 L~~q~dGNLvL~~~~~~~~vWss 50 (113)
T 3mez_B 28 LVMRDDCNLVLTKGSKTNIVWES 50 (113)
T ss_dssp EEECTTSCEEEEETTTTEEEEEC
T ss_pred EEEcCCCEEEEEECCCCEEEEEC
Confidence 344443 5666766323334433
No 30
>3rbj_A Sortase C1, sortase family protein; sortase fold, beta-barrel, LID-mutant, PILI BIOG hydrolase; 2.30A {Streptococcus agalactiae serogroup V} PDB: 3tb7_A 3rbi_A 3rbk_A 3tbe_A
Probab=20.51 E-value=37 Score=26.67 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=12.0
Q ss_pred cCCEEEEcCCCCEEEEEecc
Q 041057 8 GGGFVVTDCSQKIIFRVDGC 27 (180)
Q Consensus 8 gd~f~V~D~~G~~vf~V~g~ 27 (180)
||.+.|++..+...|+|.+.
T Consensus 151 GD~I~v~~~~~~~~Y~V~~~ 170 (230)
T 3rbj_A 151 GDRFYIEHIGGKIAYQVDQI 170 (230)
T ss_dssp TCEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEECCEEEEEEEEEE
Confidence 45566666655666666663
No 31
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=20.05 E-value=74 Score=22.45 Aligned_cols=15 Identities=20% Similarity=0.456 Sum_probs=11.3
Q ss_pred EEEEcCCCCEEEEEe
Q 041057 11 FVVTDCSQKIIFRVD 25 (180)
Q Consensus 11 f~V~D~~G~~vf~V~ 25 (180)
.+|+|++|++|.+++
T Consensus 43 v~I~d~~G~~V~t~~ 57 (138)
T 3c12_A 43 FEITDANGTFVKQLS 57 (138)
T ss_dssp EEEECSSCCEEEEEE
T ss_pred EEEEeCCCCEEEEEE
Confidence 467788888887776
Done!