BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041058
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z3Q|A Chain A, Resolution Of The Structure Of The Allergenic And
Antifungal Banana Fruit Thaumatin-Like Protein At 1.7a
Length = 200
Score = 238 bits (606), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 114/203 (56%), Positives = 143/203 (70%), Gaps = 6/203 (2%)
Query: 4 AAFEIQNNCIYTVWAAANPGGGKELHQHQSWHINL---TDAGSIWARTNCNFNANGTGNC 60
A FEI N C YTVWAAA PGGG++L+Q QSW IN+ T G IW RT C+F+ +G G C
Sbjct: 1 ATFEIVNRCSYTVWAAAVPGGGRQLNQGQSWTINVNAGTTGGRIWGRTGCSFDGSGRGRC 60
Query: 61 ESGDCDGVLNCASNASPPVTLAEYSLNVSSNFDLFSISLMKGFNIPMELKGTSSMCTQVI 120
++GDC GVL+C + +PP TLAE++LN +N D F ISL+ GFN+PM+ TS C + I
Sbjct: 61 QTGDCGGVLSCTAYGNPPNTLAEFALNQFNNLDFFDISLVDGFNVPMDFSPTSGGC-RGI 119
Query: 121 KCAGDINGLCPNELRHPGGCNNPCTLFKNDQFCCNVDRRSCGATAYSKIFKNLCPNVYTY 180
+CA DING CP L+ PGGCNNPCT+FK DQ+CCN +C T YS+ FK CP+ Y+Y
Sbjct: 120 RCAADINGQCPGALKAPGGCNNPCTVFKTDQYCCNSG--ACSPTDYSQFFKRNCPDAYSY 177
Query: 181 PMDDPASTLACPTGTGYKVVFCP 203
P DD +T CP GT Y+VVFCP
Sbjct: 178 PKDDQTTTFTCPGGTNYRVVFCP 200
>pdb|4H8T|A Chain A, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
pdb|4H8T|B Chain B, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
Length = 198
Score = 232 bits (591), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 111/203 (54%), Positives = 138/203 (67%), Gaps = 8/203 (3%)
Query: 4 AAFEIQNNCIYTVWAAANPGGGKELHQHQSWHINL---TDAGSIWARTNCNFNANGTGNC 60
A F+I N C YTVWAAA+PGGG+ L QSW I + T IW RT+C F+ANG G C
Sbjct: 1 ATFDILNKCTYTVWAAASPGGGRRLDSGQSWTITVNPGTTNARIWGRTSCTFDANGRGKC 60
Query: 61 ESGDCDGVLNCASNASPPVTLAEYSLNVSSNFDLFSISLMKGFNIPMELKGTSSMCTQVI 120
E+GDC+G+L C SPP TLAE++LN +N D ISL+ GFNIPM+ G + I
Sbjct: 61 ETGDCNGLLECQGYGSPPNTLAEFALNQPNNLDYIDISLVDGFNIPMDFSGC-----RGI 115
Query: 121 KCAGDINGLCPNELRHPGGCNNPCTLFKNDQFCCNVDRRSCGATAYSKIFKNLCPNVYTY 180
+C+ DING CP+EL+ PGGCNNPCT+FK +++CC SCG T YSK FK+ CP+ Y+Y
Sbjct: 116 QCSVDINGQCPSELKAPGGCNNPCTVFKTNEYCCTDGPGSCGPTTYSKFFKDRCPDAYSY 175
Query: 181 PMDDPASTLACPTGTGYKVVFCP 203
P DD S CP+GT YKV FCP
Sbjct: 176 PQDDKTSLFTCPSGTNYKVTFCP 198
>pdb|1PCV|A Chain A, Crystal Structure Of Osmotin, A Plant Antifungal Protein
pdb|1PCV|B Chain B, Crystal Structure Of Osmotin, A Plant Antifungal Protein
Length = 205
Score = 215 bits (547), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/207 (53%), Positives = 131/207 (63%), Gaps = 9/207 (4%)
Query: 4 AAFEIQNNCIYTVWAAANP-GGGKELHQHQSWHINL---TDAGSIWARTNCNFNANGTGN 59
A E++NNC YTVWAA+ P GGG+ L + Q+W IN T +W RTNCNFNA G G
Sbjct: 1 ATIEVRNNCPYTVWAASTPIGGGRRLDRGQTWVINAPRGTKMARVWGRTNCNFNAAGRGT 60
Query: 60 CESGDCDGVLNCASNASPPVTLAEYSLNVSSNFDLFSISLMKGFNIPMELKGT--SSMCT 117
C++GDC GVL C PP TLAEY+L+ S D + ISL+ GFNIPM T S
Sbjct: 61 CQTGDCGGVLQCTGWGKPPNTLAEYALDQFSGLDFWDISLVDGFNIPMTFAPTNPSGGKC 120
Query: 118 QVIKCAGDINGLCPNELRHPGGCNNPCTLFKNDQFCCNVDRRSCGATAYSKIFKNLCPNV 177
I C +ING CP ELR PGGCNNPCT F Q+CC + CG T +SK FK CP+
Sbjct: 121 HAIHCTANINGECPRELRVPGGCNNPCTTFGGQQYCCT--QGPCGPTFFSKFFKQRCPDA 178
Query: 178 YTYPMDDPASTLACPTG-TGYKVVFCP 203
Y+YP DDP ST CP G T Y+V+FCP
Sbjct: 179 YSYPQDDPTSTFTCPGGSTNYRVIFCP 205
>pdb|2I0W|A Chain A, Crystal Structure Analysis Of Np24-I, A Thaumatin-Like
Protein
Length = 207
Score = 212 bits (539), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/207 (53%), Positives = 130/207 (62%), Gaps = 9/207 (4%)
Query: 4 AAFEIQNNCIYTVWAAANP-GGGKELHQHQSWHINL---TDAGSIWARTNCNFNANGTGN 59
A E++NNC YTVWAA+ P GGG+ L++ Q+W IN T IW RT CNFNA G G
Sbjct: 1 ATIEVRNNCPYTVWAASTPIGGGRRLNRGQTWVINAPRGTKMARIWGRTGCNFNAAGRGT 60
Query: 60 CESGDCDGVLNCASNASPPVTLAEYSLNVSSNFDLFSISLMKGFNIPMELKGT--SSMCT 117
C++GDC GVL C PP TLAEY+L+ SN D + ISL+ GFNIPM T S
Sbjct: 61 CQTGDCGGVLQCTGWGKPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTKPSGGKC 120
Query: 118 QVIKCAGDINGLCPNELRHPGGCNNPCTLFKNDQFCCNVDRRSCGATAYSKIFKNLCPNV 177
I C +ING CP L+ PGGCNNPCT F Q+CC + CG T SK FK CP+
Sbjct: 121 HAIHCTANINGECPRALKVPGGCNNPCTTFGGQQYCCT--QGPCGPTELSKFFKKRCPDA 178
Query: 178 YTYPMDDPASTLACPTG-TGYKVVFCP 203
Y+YP DDP ST CP G T Y+VVFCP
Sbjct: 179 YSYPQDDPTSTFTCPGGSTNYRVVFCP 205
>pdb|1DU5|A Chain A, The Crystal Structure Of Zeamatin.
pdb|1DU5|B Chain B, The Crystal Structure Of Zeamatin
Length = 206
Score = 203 bits (517), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 129/206 (62%), Gaps = 6/206 (2%)
Query: 4 AAFEIQNNCIYTVWAAANP-GGGKELHQHQSWHINL---TDAGSIWARTNCNFNANGTGN 59
A F + N C +TVWAA+ P GGG++L++ +SW I T A IWART C F+A+G G+
Sbjct: 1 AVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGS 60
Query: 60 CESGDCDGVLNCASNASPPVTLAEYSLNVSSNFDLFSISLMKGFNIPME-LKGTSSMCTQ 118
C +GDC GVL C P TLAEY+L +N D F ISL+ GFN+PM L S C++
Sbjct: 61 CRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSR 120
Query: 119 VIKCAGDINGLCPNELRHPGGCNNPCTLFKNDQFCC-NVDRRSCGATAYSKIFKNLCPNV 177
+CA D+N CP ELR G CNN C +FK D++CC C T YS+ FK CP+
Sbjct: 121 GPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPDA 180
Query: 178 YTYPMDDPASTLACPTGTGYKVVFCP 203
Y+YP DD ST CP GT YKVVFCP
Sbjct: 181 YSYPKDDATSTFTCPAGTNYKVVFCP 206
>pdb|1AUN|A Chain A, Pathogenesis-Related Protein 5d From Nicotiana Tabacum
Length = 208
Score = 203 bits (517), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 106/208 (50%), Positives = 127/208 (61%), Gaps = 9/208 (4%)
Query: 3 AAAFEIQNNCIYTVWAAANP-GGGKELHQHQSWHINL---TDAGSIWARTNCNFNANGTG 58
+ FE+ NNC YTVWAAA P GGG+ L + QSW T IW RTNCNF+ G G
Sbjct: 1 SGVFEVHNNCPYTVWAAATPVGGGRRLERGQSWWFWAPPGTKMARIWGRTNCNFDGAGRG 60
Query: 59 NCESGDCDGVLNCASNASPPVTLAEYSLNVSSNFDLFSISLMKGFNIPMELKGTSSMCTQ 118
C++GDC GVL C PP TLAEY+LN SN D + IS++ GFNIPM T +
Sbjct: 61 WCQTGDCGGVLECKGWGKPPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPTKPGPGK 120
Query: 119 V--IKCAGDINGLCPNELRHPGGCNNPCTLFKNDQFCCNVDRRSCGATAYSKIFKNLCPN 176
I+C +ING CP LR PGGCNNPCT F Q+CC + CG T S+ FK CP+
Sbjct: 121 CHGIQCTANINGECPGSLRVPGGCNNPCTTFGGQQYCCT--QGPCGPTELSRWFKQRCPD 178
Query: 177 VYTYPMDDPASTLACPTG-TGYKVVFCP 203
Y+YP DDP ST C + T YKV+FCP
Sbjct: 179 AYSYPQDDPTSTFTCTSWTTDYKVMFCP 206
>pdb|1THV|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|2PE7|A Chain A, Thaumatin From Thaumatococcus Danielli In Complex With
Tris- Dipicolinate Europium
pdb|3E3S|A Chain A, Structure Of Thaumatin With The Magic Triangle I3c
pdb|3AL7|A Chain A, Recombinant Thaumatin I At 1.1 A
pdb|3ALD|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin I At
1.10 A
pdb|3VHF|A Chain A, Plant Thaumatin I At Ph 8.0
pdb|3VJQ|A Chain A, Recombinant Thaumatin At Ph 8.0 With Hydrogen Atoms
pdb|3VHG|A Chain A, Recombinant Thaumatin I At Ph 8.0
pdb|3V7V|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V82|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V84|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V87|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V88|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V8A|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCE|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCG|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCH|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCI|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCJ|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCK|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|4DC5|A Chain A, Crystal Structure Of Thaumatin Unexposed To Excessive
Sonicc Imaging Laser Dose.
pdb|4DC6|A Chain A, Crystal Structure Of Thaumatin Exposed To Excessive Sonicc
Imaging Laser Dose
Length = 207
Score = 193 bits (491), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 137/210 (65%), Gaps = 15/210 (7%)
Query: 4 AAFEIQNNCIYTVWAAANPG------GGKELHQHQSWHINL---TDAGSIWARTNCNFNA 54
A FEI N C YTVWAAA+ G GG++L+ +SW IN+ T+ G IWART+C F+
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDD 60
Query: 55 NGTGNCESGDCDGVLNCASNASPPVTLAEYSLNVSSNFDLFSISLMKGFNIPMELKGTSS 114
+G+G C++GDC G+L C PP TLAE+SLN D IS +KGFN+PM+ T+
Sbjct: 61 SGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMDFSPTTR 119
Query: 115 MCTQVIKCAGDINGLCPNELRHP-GGCNNPCTLFKNDQFCCNVDRRSCGATAYSKIFKNL 173
C + ++CA DI G CP +L+ P GGCN+ CT+F+ ++CC + CG T YS+ FK L
Sbjct: 120 GC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGK--CGPTEYSRFFKRL 176
Query: 174 CPNVYTYPMDDPASTLACPTGTGYKVVFCP 203
CP+ ++Y +D P +T+ CP + Y+V FCP
Sbjct: 177 CPDAFSYVLDKP-TTVTCPGSSNYRVTFCP 205
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 300 K
Length = 207
Score = 193 bits (491), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 136/210 (64%), Gaps = 15/210 (7%)
Query: 4 AAFEIQNNCIYTVWAAANPG------GGKELHQHQSWHINL---TDAGSIWARTNCNFNA 54
A FEI N C YTVWAAA+ G GG++L+ +SW IN+ T G IWART+C F+
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDD 60
Query: 55 NGTGNCESGDCDGVLNCASNASPPVTLAEYSLNVSSNFDLFSISLMKGFNIPMELKGTSS 114
+G+G C++GDC G+L C PP TLAE+SLN D IS +KGFN+PM+ T+
Sbjct: 61 SGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMDFSPTTR 119
Query: 115 MCTQVIKCAGDINGLCPNELRHP-GGCNNPCTLFKNDQFCCNVDRRSCGATAYSKIFKNL 173
C + ++CA DI G CP +L+ P GGCN+ CT+F+ ++CC + CG T YS+ FK L
Sbjct: 120 GC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGK--CGPTEYSRFFKRL 176
Query: 174 CPNVYTYPMDDPASTLACPTGTGYKVVFCP 203
CP+ ++Y +D P +T+ CP + Y+V FCP
Sbjct: 177 CPDAFSYVLDKP-TTVTCPGSSNYRVTFCP 205
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 192 bits (488), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 134/210 (63%), Gaps = 15/210 (7%)
Query: 4 AAFEIQNNCIYTVWAAANPG------GGKELHQHQSWHINL---TDAGSIWARTNCNFNA 54
A FEI N C YTVWAAA+ G GG++L+ +SW IN+ T G IWART+C F+
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDD 60
Query: 55 NGTGNCESGDCDGVLNCASNASPPVTLAEYSLNVSSNFDLFSISLMKGFNIPMELKGTSS 114
+G G C +GDC G+L C PP TLAE+SLN D IS +KGFN+PM+ T+
Sbjct: 61 SGRGICRTGDCGGLLQCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMDFSPTTR 119
Query: 115 MCTQVIKCAGDINGLCPNELRHP-GGCNNPCTLFKNDQFCCNVDRRSCGATAYSKIFKNL 173
C + ++CA DI G CP +L+ P GGCN+ CT+F+ ++CC + CG T YS+ FK L
Sbjct: 120 GC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGK--CGPTEYSRFFKRL 176
Query: 174 CPNVYTYPMDDPASTLACPTGTGYKVVFCP 203
CP+ ++Y +D P +T+ CP + Y+V FCP
Sbjct: 177 CPDAFSYVLDKP-TTVTCPGSSNYRVTFCP 205
>pdb|1KWN|A Chain A, 1.2 A Structure Of Thaumatin Crystallized In Gel
pdb|1LXZ|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LY0|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LR2|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1LR3|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1PP3|A Chain A, Structure Of Thaumatin In A Hexagonal Space Group
pdb|1PP3|B Chain B, Structure Of Thaumatin In A Hexagonal Space Group
pdb|2OQN|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1THI|A Chain A, Crystal Structures Of Two Intensely Sweet Proteins
pdb|2VHR|A Chain A, Atomic Resolution (0.95a) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 4 C
pdb|2VI1|A Chain A, Atomic Resolution (1.04 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 22 C.
pdb|2VI2|A Chain A, Atomic Resolution (1.05 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 4c
pdb|2VI3|A Chain A, Atomic Resolution (0.98 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 20 C
pdb|2VI4|A Chain A, Atomic Resolution (1.10 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 6 C.
pdb|2VU6|A Chain A, Atomic Resolution (0.95 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 19 C.
pdb|2VU7|A Chain A, Atomic Resolution (1.08 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 4 C
pdb|3QY5|A Chain A, Microfluidic Crystallization Of Thaumatin Using The
Crystal Former
pdb|4AXR|A Chain A, Crystal Structure Of Thaumatin From A Auto-Harvested
Crystal
pdb|4BAL|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-
Hydroxymethyltriazoledipicolinate Complex At 1.30 A
Resolution.
pdb|4BAR|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-Hydroxyethyltriazole
Dipicolinate Complex At 1.20 A Resolution.
pdb|3ZEJ|A Chain A, Thaumatin Structure Determined At Room Temperature By
In-Situ Diffraction In Chipx
Length = 207
Score = 192 bits (488), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 136/210 (64%), Gaps = 15/210 (7%)
Query: 4 AAFEIQNNCIYTVWAAANPG------GGKELHQHQSWHINL---TDAGSIWARTNCNFNA 54
A FEI N C YTVWAAA+ G GG++L+ +SW IN+ T+ G IWART+C F+
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDD 60
Query: 55 NGTGNCESGDCDGVLNCASNASPPVTLAEYSLNVSSNFDLFSISLMKGFNIPMELKGTSS 114
+G+G C++GDC G+L C PP TLAE+SLN D IS +KGFN+PM T+
Sbjct: 61 SGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMNFSPTTR 119
Query: 115 MCTQVIKCAGDINGLCPNELRHP-GGCNNPCTLFKNDQFCCNVDRRSCGATAYSKIFKNL 173
C + ++CA DI G CP +L+ P GGCN+ CT+F+ ++CC + CG T YS+ FK L
Sbjct: 120 GC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGK--CGPTEYSRFFKRL 176
Query: 174 CPNVYTYPMDDPASTLACPTGTGYKVVFCP 203
CP+ ++Y +D P +T+ CP + Y+V FCP
Sbjct: 177 CPDAFSYVLDKP-TTVTCPGSSNYRVTFCP 205
>pdb|2BLR|A Chain A, Thaumatin Before A High Dose X-Ray "burn"
pdb|2BLU|A Chain A, Thaumatin After A High Dose X-Ray "burn"
pdb|2VHK|A Chain A, Atomic Resolution (0.94 A) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 22c
pdb|2WBZ|A Chain A, 1.6 A Structure Of Thaumatin Crystallized Without Tartrate
At 4 C
pdb|3N02|A Chain A, Thaumatic Crystals Grown In Loops/micromounts
pdb|3N03|A Chain A, Thaumatin Crystals Grown From Drops
pdb|4AXU|A Chain A, Crystal Structure Of Thaumatin From An Auto-Harvested
Crystal, Control Experiment
Length = 206
Score = 192 bits (487), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 136/210 (64%), Gaps = 15/210 (7%)
Query: 4 AAFEIQNNCIYTVWAAANPG------GGKELHQHQSWHINL---TDAGSIWARTNCNFNA 54
A FEI N C YTVWAAA+ G GG++L+ +SW IN+ T+ G IWART+C F+
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDD 60
Query: 55 NGTGNCESGDCDGVLNCASNASPPVTLAEYSLNVSSNFDLFSISLMKGFNIPMELKGTSS 114
+G+G C++GDC G+L C PP TLAE+SLN D IS +KGFN+PM T+
Sbjct: 61 SGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMNFSPTTR 119
Query: 115 MCTQVIKCAGDINGLCPNELRHP-GGCNNPCTLFKNDQFCCNVDRRSCGATAYSKIFKNL 173
C + ++CA DI G CP +L+ P GGCN+ CT+F+ ++CC + CG T YS+ FK L
Sbjct: 120 GC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGK--CGPTEYSRFFKRL 176
Query: 174 CPNVYTYPMDDPASTLACPTGTGYKVVFCP 203
CP+ ++Y +D P +T+ CP + Y+V FCP
Sbjct: 177 CPDAFSYVLDKP-TTVTCPGSSNYRVTFCP 205
>pdb|2D8O|A Chain A, Structure Of Vil-Thaumatin
Length = 207
Score = 190 bits (482), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 97/210 (46%), Positives = 135/210 (64%), Gaps = 15/210 (7%)
Query: 4 AAFEIQNNCIYTVWAAANPG------GGKELHQHQSWHINL---TDAGSIWARTNCNFNA 54
A FEI N C YTVWAAA+ G GG++L+ +SW IN+ T+ G IWART+C F+
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXFDD 60
Query: 55 NGTGNCESGDCDGVLNCASNASPPVTLAEYSLNVSSNFDLFSISLMKGFNIPMELKGTSS 114
+G+G C++GDC G+L C PP TLAE+SLN D IS +KGFN+PM T+
Sbjct: 61 SGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQXGK-DYIDISNIKGFNVPMNFSPTTR 119
Query: 115 MCTQVIKCAGDINGLCPNELRHP-GGCNNPCTLFKNDQFCCNVDRRSCGATAYSKIFKNL 173
C + ++CA DI G CP +L+ P GGCN+ CT+F+ ++CC + CG T S+ FK L
Sbjct: 120 GC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGK--CGPTEXSRFFKRL 176
Query: 174 CPNVYTYPMDDPASTLACPTGTGYKVVFCP 203
CP+ ++Y +D P +T+ CP + Y+V FCP
Sbjct: 177 CPDAFSYVLDKP-TTVTCPGSSNYRVTFCP 205
>pdb|2D8P|A Chain A, Structure Of Hyper-Vil-Thaumatin
Length = 207
Score = 187 bits (474), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 134/210 (63%), Gaps = 15/210 (7%)
Query: 4 AAFEIQNNCIYTVWAAANPG------GGKELHQHQSWHINL---TDAGSIWARTNCNFNA 54
A FEI N C TVWAAA+ G GG++L+ +SW IN+ T+ G IWART+C F+
Sbjct: 1 ATFEIVNRCSXTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXFDD 60
Query: 55 NGTGNCESGDCDGVLNCASNASPPVTLAEYSLNVSSNFDLFSISLMKGFNIPMELKGTSS 114
+G+G C++GDC G+L C PP TLAE+SLN D IS +KGFN+PM T+
Sbjct: 61 SGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQXGK-DXIDISNIKGFNVPMNFSPTTR 119
Query: 115 MCTQVIKCAGDINGLCPNELRHP-GGCNNPCTLFKNDQFCCNVDRRSCGATAYSKIFKNL 173
C + ++CA DI G CP +L+ P GGCN+ CT+F+ ++CC + CG T S+ FK L
Sbjct: 120 GC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGK--CGPTEXSRFFKRL 176
Query: 174 CPNVYTYPMDDPASTLACPTGTGYKVVFCP 203
CP+ ++Y +D P +T+ CP + Y+V FCP
Sbjct: 177 CPDAFSYVLDKP-TTVTCPGSSNYRVTFCP 205
>pdb|2AHN|A Chain A, High Resolution Structure Of A Cherry Allergen Pru Av 2
Length = 222
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 108/223 (48%), Gaps = 24/223 (10%)
Query: 4 AAFEIQNNCIYTVWAAANPGGGK--------ELHQHQSWHINLTDA--GSIWARTNCNFN 53
A +NNC Y VW K EL S+ ++ G WART C+ +
Sbjct: 1 ATISFKNNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTD 60
Query: 54 ANGTGNCESGDC-DGVLNCASN-ASPPVTLAEYSLNVSSNFDLFSISLMKGFNIPMEL-- 109
A+G C + DC G + C N A PP TLAE+++ D + +SL+ GFN+PM +
Sbjct: 61 ASGKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPMSVTP 120
Query: 110 KGTSSMCTQVIKCAGDINGLCPNELRHPG------GCNNPCTLFKNDQFCCNVDR---RS 160
+G + C + C ++N +CP+EL+ G C + C F Q+CC + +
Sbjct: 121 QGGTGDC-KTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNTPET 179
Query: 161 CGATAYSKIFKNLCPNVYTYPMDDPASTLACPTGTGYKVVFCP 203
C T YS+IF N CP+ Y+Y DD T C G Y + FCP
Sbjct: 180 CPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFCP 222
>pdb|3ZS3|A Chain A, High Resolution Structure Of Mal D 2, The Thaumatin Like
Food Allergen From Apple
Length = 222
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 104/223 (46%), Gaps = 24/223 (10%)
Query: 4 AAFEIQNNCIYTVWAAANPGGGK--------ELHQHQSWHINLTD--AGSIWARTNCNFN 53
A NNC TVW G K EL S ++ +G W RT C+ +
Sbjct: 1 AKITFTNNCPNTVWPGTLTGDQKPQLSLTGFELASKASRSVDAPSPWSGRFWGRTRCSTD 60
Query: 54 ANGTGNCESGDC-DGVLNC-ASNASPPVTLAEYSLNVSSNFDLFSISLMKGFNIPMEL-- 109
A G CE+ DC G + C + A PP TL E ++ + D + +SL+ GFN+PM +
Sbjct: 61 AAGKFTCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAP 120
Query: 110 KGTSSMCTQVIKCAGDINGLCPNELRHPGG------CNNPCTLFKNDQFCC---NVDRRS 160
+G + C + C ++N +CP L+ C + C F + ++CC N +
Sbjct: 121 QGGTGEC-KPSSCPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCTPPNNTPET 179
Query: 161 CGATAYSKIFKNLCPNVYTYPMDDPASTLACPTGTGYKVVFCP 203
C T YS+IF+ CP Y+Y DD ST C G Y + FCP
Sbjct: 180 CPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 222
>pdb|3G7M|A Chain A, Structure Of The Thaumatin-Like Xylanase Inhibitor Tlxi
Length = 151
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 64/115 (55%), Gaps = 9/115 (7%)
Query: 4 AAFEIQNNCIYTVWAA-----ANPGGGKELHQHQSWHINLTDAGS--IWARTNCNFNANG 56
A I N C +TVW A A GGG ELH SW ++ GS IW RT C+F+ G
Sbjct: 1 APLTITNRCHFTVWPAVALVLAQGGGGTELHPGASWSLDTPVIGSQYIWGRTGCSFDRAG 60
Query: 57 TGNCESGDCDG-VLNCASNASPPVTLAEYSLNVSSNFDLFSISLMKGFNIPMELK 110
G C++GDC G L C N + P T+AE S+ + N+ S +KGFN+PM LK
Sbjct: 61 KGRCQTGDCGGSSLTCGGNPAVPTTMAEVSV-LQGNYTYGVTSTLKGFNVPMNLK 114
>pdb|4D93|A Chain A, Crystal Structure Of Tep1s
pdb|4D93|B Chain B, Crystal Structure Of Tep1s
pdb|4D93|C Chain C, Crystal Structure Of Tep1s
Length = 1323
Score = 29.6 bits (65), Expect = 1.3, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 147 FKNDQFCCNVDRRSCGATAYSKIFKNLCPNVYTYPMDDPASTLACPTGTGYK--VVFCP 203
+KN F N+D KI L PN+ T + + + LA PTG G + V F P
Sbjct: 790 YKNQTFPFNLDINKKADNGSKKIEFRLNPNLLTMVIKNLDNLLAVPTGCGEQNMVKFVP 848
>pdb|3BG6|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|B Chain B, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|C Chain C, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|D Chain D, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|E Chain E, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|F Chain F, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|G Chain G, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|H Chain H, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
Length = 623
Score = 26.9 bits (58), Expect = 7.8, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 113 SSMCTQVIKCAGDINGLCPNELR-----HPGGCNNPCTLFKNDQFCCNVDRRSCGATAYS 167
+ MC K G + G P ++ H GG + K D C N D R G +
Sbjct: 520 TDMCVMSAKIGGFLPGSLPQFMKPGLVLHLGGTHRMGFDEKEDNCCVNTDSRVFG---FK 576
Query: 168 KIFKNLCPNVYTYPMDDPAST 188
+F C N+ T +P T
Sbjct: 577 NLFLGGCGNIPTAYGANPTLT 597
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,085,539
Number of Sequences: 62578
Number of extensions: 303460
Number of successful extensions: 521
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 420
Number of HSP's gapped (non-prelim): 33
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)