BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041063
(490 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FML2|HDA6_ARATH Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1
Length = 471
Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/437 (84%), Positives = 400/437 (91%), Gaps = 1/437 (0%)
Query: 44 MEEPTEGASLVSGPDGKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRR 103
ME G SL SGPDG+KRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAH+LI+HY LHRR
Sbjct: 1 MEADESGISLPSGPDGRKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHSLIIHYHLHRR 60
Query: 104 MEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFG 163
+E++RP A SDI RFH+ EYV+FLASVSPES GDPS +R+L+RFNVGEDCPVFDGLF
Sbjct: 61 LEISRPSLADASDIGRFHSPEYVDFLASVSPESMGDPSAARNLRRFNVGEDCPVFDGLFD 120
Query: 164 FCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHR 223
FC+ASAGGSIGAAVKLNR DADIA+NW GGLHHAKKSEASGFCYVNDIVLGILELLK+ +
Sbjct: 121 FCRASAGGSIGAAVKLNRQDADIAINWGGGLHHAKKSEASGFCYVNDIVLGILELLKMFK 180
Query: 224 RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPL 283
RVLY+DIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHI+DVGA +GK+YALNVPL
Sbjct: 181 RVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDVGAEKGKYYALNVPL 240
Query: 284 NDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL 343
NDG+DDESFR LFRP+IQKVMEVYQP+AVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL
Sbjct: 241 NDGMDDESFRSLFRPLIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL 300
Query: 344 RSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPC 403
RS+NVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEY+EYFGPDYTLHV+P
Sbjct: 301 RSYNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDYTLHVDPS 360
Query: 404 NMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPEEPEEDMERRPKPRIWN 463
MENLN KDME+IRNTLLEQLSGLIHAPSV FQ TP +V +EPE+DME RPKPRIW+
Sbjct: 361 PMENLNTPKDMERIRNTLLEQLSGLIHAPSVQFQHTPPVNRVLDEPEDDMETRPKPRIWS 420
Query: 464 GE-DYESDHDEDDKPPH 479
G YESD D+DDKP H
Sbjct: 421 GTATYESDSDDDDKPLH 437
>sp|O22446|HDA19_ARATH Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2
Length = 501
Score = 611 bits (1575), Expect = e-174, Method: Compositional matrix adjust.
Identities = 294/411 (71%), Positives = 345/411 (83%), Gaps = 4/411 (0%)
Query: 48 TEGASLVSGPDGKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVN 107
T G SL SGPDG KR+V YFY+P +G+YYYGQGHPMKPHRIRM H L+ HYGL + M+V
Sbjct: 3 TGGNSLASGPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVL 62
Query: 108 RPFPAGPSDIRRFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQA 167
+PFPA D+ RFH D+YV FL S++PE+ D R LKRFNVGEDCPVFDGL+ FCQ
Sbjct: 63 KPFPARDRDLCRFHADDYVSFLRSITPETQQDQI--RQLKRFNVGEDCPVFDGLYSFCQT 120
Query: 168 SAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLY 227
AGGS+G +VKLN G DIA+NWAGGLHHAKK EASGFCYVNDIVL ILELLK H RVLY
Sbjct: 121 YAGGSVGGSVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLY 180
Query: 228 VDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGL 287
VDID+HHGDGVEEAFY TDRVMTVSFHKFGD+FPGTGHI+D+G G GK+Y+LNVPL+DG+
Sbjct: 181 VDIDIHHGDGVEEAFYATDRVMTVSFHKFGDYFPGTGHIQDIGYGSGKYYSLNVPLDDGI 240
Query: 288 DDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFN 347
DDES+ LF+PI+ KVME+++P AVVLQCGADSLSGDRLGCFNLS+KGHA+C++F+RSFN
Sbjct: 241 DDESYHLLFKPIMGKVMEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFN 300
Query: 348 VPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMEN 407
VPL++LGGGGYTIRNVARCWCYET VA+GVE ++K+P +EYYEYFGPDYTLHV P NMEN
Sbjct: 301 VPLLLLGGGGYTIRNVARCWCYETGVALGVEVEDKMPEHEYYEYFGPDYTLHVAPSNMEN 360
Query: 408 LNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPE--EPEEDMERR 456
N+ + +E+IRN LL LS L HAPSVPFQ P T+ PE E +ED ++R
Sbjct: 361 KNSRQMLEEIRNDLLHNLSKLQHAPSVPFQERPPDTETPEVDEDQEDGDKR 411
>sp|P56517|HDAC1_CHICK Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1
Length = 480
Score = 577 bits (1487), Expect = e-164, Method: Compositional matrix adjust.
Identities = 253/382 (66%), Positives = 321/382 (84%), Gaps = 2/382 (0%)
Query: 59 GKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIR 118
G KR+V Y+Y+ +G+YYYGQGHPMKPHRIRM HNL+++YGL+R+ME+ RP A ++
Sbjct: 6 GTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMT 65
Query: 119 RFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVK 178
++H+D+Y++FL S+ P++ + +S+ ++RFNVGEDCPVFDGLF FCQ SAGGS+ +AVK
Sbjct: 66 KYHSDDYIKFLRSIRPDNMSE--YSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVK 123
Query: 179 LNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGV 238
LN+ DIAVNWAGGLHHAKKSEASGFCYVNDIVL ILELLK H+RVLY+DID+HHGDGV
Sbjct: 124 LNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGV 183
Query: 239 EEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRP 298
EEAFYTTDRVMTVSFHK+G++FPGTG ++D+GAG+GK+YA+N PL DG+DDES+ +F+P
Sbjct: 184 EEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKP 243
Query: 299 IIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGY 358
+I KVME +QP AVVLQCG+DSLSGDRLGCFNL++KGHA C+ F++SFN+P+++LGGGGY
Sbjct: 244 VISKVMETFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGY 303
Query: 359 TIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIR 418
TIRNVARCW YETAVA+ E N+LPYN+Y+EYFGPD+ LH+ P NM N N ++ +EKI+
Sbjct: 304 TIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIK 363
Query: 419 NTLLEQLSGLIHAPSVPFQTTP 440
L E L L HAP V Q P
Sbjct: 364 QRLFENLRMLPHAPGVQMQPIP 385
>sp|Q4QQW4|HDAC1_RAT Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1
Length = 482
Score = 575 bits (1482), Expect = e-163, Method: Compositional matrix adjust.
Identities = 251/387 (64%), Positives = 323/387 (83%), Gaps = 2/387 (0%)
Query: 54 VSGPDGKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAG 113
++ G KR+V Y+Y+ +G+YYYGQGHPMKPHRIRM HNL+++YGL+R+ME+ RP A
Sbjct: 1 MAQTQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN 60
Query: 114 PSDIRRFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSI 173
++ ++H+D+Y++FL S+ P++ + +S+ ++RFNVGEDCPVFDGLF FCQ S GGS+
Sbjct: 61 AEEMTKYHSDDYIKFLRSIRPDNMSE--YSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSV 118
Query: 174 GAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVH 233
+AVKLN+ DIAVNWAGGLHHAKKSEASGFCYVNDIVL ILELLK H+RVLY+DID+H
Sbjct: 119 ASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIH 178
Query: 234 HGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFR 293
HGDGVEEAFYTTDRVMTVSFHK+G++FPGTG ++D+GAG+GK+YA+N PL DG+DDES+
Sbjct: 179 HGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYE 238
Query: 294 GLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVL 353
+F+P++ KVME++QP AVVLQCG+DSLSGDRLGCFNL++KGHA C+ F++SFN+P+++L
Sbjct: 239 AIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLML 298
Query: 354 GGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKD 413
GGGGYTIRNVARCW YETAVA+ E N+LPYN+Y+EYFGPD+ LH+ P NM N N ++
Sbjct: 299 GGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEY 358
Query: 414 MEKIRNTLLEQLSGLIHAPSVPFQTTP 440
+EKI+ L E L L HAP V Q P
Sbjct: 359 LEKIKQRLFENLRMLPHAPGVQMQAIP 385
>sp|O09106|HDAC1_MOUSE Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1
Length = 482
Score = 575 bits (1482), Expect = e-163, Method: Compositional matrix adjust.
Identities = 251/387 (64%), Positives = 323/387 (83%), Gaps = 2/387 (0%)
Query: 54 VSGPDGKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAG 113
++ G KR+V Y+Y+ +G+YYYGQGHPMKPHRIRM HNL+++YGL+R+ME+ RP A
Sbjct: 1 MAQTQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN 60
Query: 114 PSDIRRFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSI 173
++ ++H+D+Y++FL S+ P++ + +S+ ++RFNVGEDCPVFDGLF FCQ S GGS+
Sbjct: 61 AEEMTKYHSDDYIKFLRSIRPDNMSE--YSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSV 118
Query: 174 GAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVH 233
+AVKLN+ DIAVNWAGGLHHAKKSEASGFCYVNDIVL ILELLK H+RVLY+DID+H
Sbjct: 119 ASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIH 178
Query: 234 HGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFR 293
HGDGVEEAFYTTDRVMTVSFHK+G++FPGTG ++D+GAG+GK+YA+N PL DG+DDES+
Sbjct: 179 HGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYE 238
Query: 294 GLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVL 353
+F+P++ KVME++QP AVVLQCG+DSLSGDRLGCFNL++KGHA C+ F++SFN+P+++L
Sbjct: 239 AIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLML 298
Query: 354 GGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKD 413
GGGGYTIRNVARCW YETAVA+ E N+LPYN+Y+EYFGPD+ LH+ P NM N N ++
Sbjct: 299 GGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEY 358
Query: 414 MEKIRNTLLEQLSGLIHAPSVPFQTTP 440
+EKI+ L E L L HAP V Q P
Sbjct: 359 LEKIKQRLFENLRMLPHAPGVQMQAIP 385
>sp|Q32PJ8|HDAC1_BOVIN Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1
Length = 482
Score = 575 bits (1481), Expect = e-163, Method: Compositional matrix adjust.
Identities = 251/387 (64%), Positives = 323/387 (83%), Gaps = 2/387 (0%)
Query: 54 VSGPDGKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAG 113
++ G KR+V Y+Y+ +G+YYYGQGHPMKPHRIRM HNL+++YGL+R+ME+ RP A
Sbjct: 1 MAQTQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN 60
Query: 114 PSDIRRFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSI 173
++ ++H+D+Y++FL S+ P++ + +S+ ++RFNVGEDCPVFDGLF FCQ S GGS+
Sbjct: 61 AEEMTKYHSDDYIKFLRSIRPDNMSE--YSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSV 118
Query: 174 GAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVH 233
+AVKLN+ DIAVNWAGGLHHAKKSEASGFCYVNDIVL ILELLK H+RVLY+DID+H
Sbjct: 119 ASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIH 178
Query: 234 HGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFR 293
HGDGVEEAFYTTDRVMTVSFHK+G++FPGTG ++D+GAG+GK+YA+N PL DG+DDES+
Sbjct: 179 HGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYE 238
Query: 294 GLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVL 353
+F+P++ KVME++QP AVVLQCG+DSLSGDRLGCFNL++KGHA C+ F++SFN+P+++L
Sbjct: 239 AIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLML 298
Query: 354 GGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKD 413
GGGGYTIRNVARCW YETAVA+ E N+LPYN+Y+EYFGPD+ LH+ P NM N N ++
Sbjct: 299 GGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEY 358
Query: 414 MEKIRNTLLEQLSGLIHAPSVPFQTTP 440
+EKI+ L E L L HAP V Q P
Sbjct: 359 LEKIKQRLFENLRMLPHAPGVQMQAIP 385
>sp|Q5RAG0|HDAC1_PONAB Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1
Length = 482
Score = 574 bits (1479), Expect = e-163, Method: Compositional matrix adjust.
Identities = 250/387 (64%), Positives = 323/387 (83%), Gaps = 2/387 (0%)
Query: 54 VSGPDGKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAG 113
++ G +R+V Y+Y+ +G+YYYGQGHPMKPHRIRM HNL+++YGL+R+ME+ RP A
Sbjct: 1 MAQTQGTRRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN 60
Query: 114 PSDIRRFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSI 173
++ ++H+D+Y++FL S+ P++ + +S+ ++RFNVGEDCPVFDGLF FCQ S GGS+
Sbjct: 61 AEEMTKYHSDDYIKFLRSIRPDNMSE--YSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSV 118
Query: 174 GAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVH 233
+AVKLN+ DIAVNWAGGLHHAKKSEASGFCYVNDIVL ILELLK H+RVLY+DID+H
Sbjct: 119 ASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIH 178
Query: 234 HGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFR 293
HGDGVEEAFYTTDRVMTVSFHK+G++FPGTG ++D+GAG+GK+YA+N PL DG+DDES+
Sbjct: 179 HGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYE 238
Query: 294 GLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVL 353
+F+P++ KVME++QP AVVLQCG+DSLSGDRLGCFNL++KGHA C+ F++SFN+P+++L
Sbjct: 239 AIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLML 298
Query: 354 GGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKD 413
GGGGYTIRNVARCW YETAVA+ E N+LPYN+Y+EYFGPD+ LH+ P NM N N ++
Sbjct: 299 GGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEY 358
Query: 414 MEKIRNTLLEQLSGLIHAPSVPFQTTP 440
+EKI+ L E L L HAP V Q P
Sbjct: 359 LEKIKQRLFENLRMLPHAPGVQMQAIP 385
>sp|Q13547|HDAC1_HUMAN Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1
Length = 482
Score = 574 bits (1479), Expect = e-163, Method: Compositional matrix adjust.
Identities = 250/387 (64%), Positives = 323/387 (83%), Gaps = 2/387 (0%)
Query: 54 VSGPDGKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAG 113
++ G +R+V Y+Y+ +G+YYYGQGHPMKPHRIRM HNL+++YGL+R+ME+ RP A
Sbjct: 1 MAQTQGTRRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN 60
Query: 114 PSDIRRFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSI 173
++ ++H+D+Y++FL S+ P++ + +S+ ++RFNVGEDCPVFDGLF FCQ S GGS+
Sbjct: 61 AEEMTKYHSDDYIKFLRSIRPDNMSE--YSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSV 118
Query: 174 GAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVH 233
+AVKLN+ DIAVNWAGGLHHAKKSEASGFCYVNDIVL ILELLK H+RVLY+DID+H
Sbjct: 119 ASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIH 178
Query: 234 HGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFR 293
HGDGVEEAFYTTDRVMTVSFHK+G++FPGTG ++D+GAG+GK+YA+N PL DG+DDES+
Sbjct: 179 HGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYE 238
Query: 294 GLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVL 353
+F+P++ KVME++QP AVVLQCG+DSLSGDRLGCFNL++KGHA C+ F++SFN+P+++L
Sbjct: 239 AIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLML 298
Query: 354 GGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKD 413
GGGGYTIRNVARCW YETAVA+ E N+LPYN+Y+EYFGPD+ LH+ P NM N N ++
Sbjct: 299 GGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEY 358
Query: 414 MEKIRNTLLEQLSGLIHAPSVPFQTTP 440
+EKI+ L E L L HAP V Q P
Sbjct: 359 LEKIKQRLFENLRMLPHAPGVQMQAIP 385
>sp|O42227|HDA1B_XENLA Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-b PE=1
SV=1
Length = 480
Score = 570 bits (1468), Expect = e-161, Method: Compositional matrix adjust.
Identities = 246/382 (64%), Positives = 321/382 (84%), Gaps = 2/382 (0%)
Query: 59 GKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIR 118
G K++V Y+Y+ +G+YYYGQGHPMKPHRIRM HNL+++YGL+R+ME+ RP A ++
Sbjct: 6 GTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKASAEEMT 65
Query: 119 RFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVK 178
++H+D+Y++FL S+ P++ + +S+ ++RFNVGEDCPVFDGLF FCQ S GGS+ +AVK
Sbjct: 66 KYHSDDYIKFLRSIRPDNMSE--YSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVK 123
Query: 179 LNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGV 238
LN+ DI+VNW+GGLHHAKKSEASGFCYVNDIVL ILELLK H+RV+Y+DID+HHGDGV
Sbjct: 124 LNKQQTDISVNWSGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVVYIDIDIHHGDGV 183
Query: 239 EEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRP 298
EEAFYTTDRVM+VSFHK+G++FPGTG ++D+GAG+GK+YA+N PL DG+DDES+ +F+P
Sbjct: 184 EEAFYTTDRVMSVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKP 243
Query: 299 IIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGY 358
++ KVME++QP AVVLQCGADSLSGDRLGCFNL++KGHA C+ F+++FN+P+++LGGGGY
Sbjct: 244 VMTKVMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEFIKTFNLPMLMLGGGGY 303
Query: 359 TIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIR 418
TIRNVARCW YETAVA+ E N+LPYN+Y+EYFGPD+ LH+ P NM N N ++ +EKI+
Sbjct: 304 TIRNVARCWTYETAVALDSEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIK 363
Query: 419 NTLLEQLSGLIHAPSVPFQTTP 440
L E L L HAP V Q P
Sbjct: 364 QRLFENLRMLPHAPGVQMQAIP 385
>sp|P56521|HDA19_MAIZE Probable histone deacetylase 19 OS=Zea mays PE=2 SV=1
Length = 513
Score = 569 bits (1467), Expect = e-161, Method: Compositional matrix adjust.
Identities = 277/397 (69%), Positives = 329/397 (82%), Gaps = 8/397 (2%)
Query: 50 GASLVS-GPDGKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNR 108
G SL S GPDG+KRRV YFY+P +G+YYYGQGHPMKPHRIRM H+L+ YGL +M+V R
Sbjct: 10 GNSLPSVGPDGQKRRVCYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLARYGLLNQMQVYR 69
Query: 109 PFPAGPSDIRRFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQAS 168
P PA ++ RFH +EY+ FL SV+PE+ D R LKRFNVGE+CPV DGL+ FCQ
Sbjct: 70 PNPARERELCRFHAEEYINFLRSVTPETQQDQI--RLLKRFNVGEECPVLDGLYSFCQTY 127
Query: 169 AGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYV 228
AG S+G AVK N G DIA+NW+GGLHHAKK EASGFCYVNDIVL ILELLK H RVLYV
Sbjct: 128 AGASVGGAVKFNHGH-DIAINWSGGLHHAKKCEASGFCYVNDIVLAILELLKHHERVLYV 186
Query: 229 DIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLD 288
DID+HHGDGVEEAFYTTDRVMTVSFHKFGD+FPGTG I+D+G +GK+Y+LNVPL+DG+D
Sbjct: 187 DIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGHSKGKYYSLNVPLDDGID 246
Query: 289 DESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNV 348
DES++ LF+PI+ KVMEV++P AVVLQCGADSLSGDRLGCFNLS+KGHA+C+R++RSFNV
Sbjct: 247 DESYQSLFKPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFNV 306
Query: 349 PLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENL 408
PL++LGGGGYTIRNVARCWCYET VA+G EP++K+P NEYYEYFGPDYTLHV P NMEN
Sbjct: 307 PLLLLGGGGYTIRNVARCWCYETGVALGQEPEDKMPVNEYYEYFGPDYTLHVAPSNMENK 366
Query: 409 NAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQV 445
N + ++ IR+ +LS L HAPSV FQ T++
Sbjct: 367 NTRQQLDDIRS----KLSKLRHAPSVHFQERVPDTEI 399
>sp|Q94517|HDAC1_DROME Histone deacetylase Rpd3 OS=Drosophila melanogaster GN=Rpd3 PE=1
SV=2
Length = 521
Score = 568 bits (1464), Expect = e-161, Method: Compositional matrix adjust.
Identities = 249/380 (65%), Positives = 317/380 (83%), Gaps = 2/380 (0%)
Query: 61 KRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRF 120
K+RV Y+Y+ IG+YYYGQGHPMKPHRIRM HNL+++YGL+R+ME+ RP A ++ +F
Sbjct: 6 KKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATADEMTKF 65
Query: 121 HTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLN 180
H+DEYV FL S+ P++ + +++ ++RFNVGEDCPVFDGL+ FCQ SAGGS+ AAVKLN
Sbjct: 66 HSDEYVRFLRSIRPDNMSE--YNKQMQRFNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLN 123
Query: 181 RGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEE 240
+ ++I +NW GGLHHAKKSEASGFCYVNDIVLGILELLK H+RVLY+DIDVHHGDGVEE
Sbjct: 124 KQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDIDVHHGDGVEE 183
Query: 241 AFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPII 300
AFYTTDRVMTVSFHK+G++FPGTG ++D+GAG+GK+YA+N+PL DG+DD+++ +F PII
Sbjct: 184 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDDAYESIFVPII 243
Query: 301 QKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTI 360
KVME +QP AVVLQCGADSL+GDRLGCFNL+VKGH C+ F++ +N+P +++GGGGYTI
Sbjct: 244 SKVMETFQPAAVVLQCGADSLTGDRLGCFNLTVKGHGKCVEFVKKYNLPFLMVGGGGYTI 303
Query: 361 RNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNT 420
RNV+RCW YET+VA+ VE N+LPYN+Y+EYFGPD+ LH+ P NM N N + +EKI+N
Sbjct: 304 RNVSRCWTYETSVALAVEIANELPYNDYFEYFGPDFKLHISPSNMTNQNTSEYLEKIKNR 363
Query: 421 LLEQLSGLIHAPSVPFQTTP 440
L E L L HAP V Q P
Sbjct: 364 LFENLRMLPHAPGVQIQAIP 383
>sp|Q92769|HDAC2_HUMAN Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=1 SV=2
Length = 488
Score = 557 bits (1435), Expect = e-158, Method: Compositional matrix adjust.
Identities = 265/423 (62%), Positives = 331/423 (78%), Gaps = 10/423 (2%)
Query: 59 GKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIR 118
G K++V Y+Y+ IG+YYYGQGHPMKPHRIRM HNL+++YGL+R+ME+ RP A ++
Sbjct: 7 GGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMT 66
Query: 119 RFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVK 178
++H+DEY++FL S+ P++ + +S+ ++RFNVGEDCPVFDGLF FCQ S GGS+ AVK
Sbjct: 67 KYHSDEYIKFLRSIRPDNMSE--YSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVK 124
Query: 179 LNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGV 238
LNR D+AVNWAGGLHHAKKSEASGFCYVNDIVL ILELLK H+RVLY+DID+HHGDGV
Sbjct: 125 LNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGV 184
Query: 239 EEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRP 298
EEAFYTTDRVMTVSFHK+G++FPGTG ++D+GAG+GK+YA+N P+ DG+DDES+ +F+P
Sbjct: 185 EEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKP 244
Query: 299 IIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGY 358
II KVME+YQP AVVLQCGADSLSGDRLGCFNL+VKGHA C+ +++FN+PL++LGGGGY
Sbjct: 245 IISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGY 304
Query: 359 TIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIR 418
TIRNVARCW YETAVA+ E N+LPYN+Y+EYFGPD+ LH+ P NM N N + MEKI+
Sbjct: 305 TIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIK 364
Query: 419 NTLLEQLSGLIHAPSVPFQTTPATTQVPEEPEEDME--------RRPKPRIWNGEDYESD 470
L E L L HAP V Q P + +ED E R RI E++
Sbjct: 365 QRLFENLRMLPHAPGVQMQAIPEDAVHEDSGDEDGEDPDKRISIRASDKRIACDEEFSDS 424
Query: 471 HDE 473
DE
Sbjct: 425 EDE 427
>sp|P70288|HDAC2_MOUSE Histone deacetylase 2 OS=Mus musculus GN=Hdac2 PE=1 SV=1
Length = 488
Score = 556 bits (1432), Expect = e-157, Method: Compositional matrix adjust.
Identities = 265/423 (62%), Positives = 330/423 (78%), Gaps = 10/423 (2%)
Query: 59 GKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIR 118
G K++V Y+Y+ IG+YYYGQGHPMKPHRIRM HNL+++YGL+R+ME+ RP A ++
Sbjct: 7 GGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMT 66
Query: 119 RFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVK 178
++H+DEY++FL S+ P++ + +S+ ++RFNVGEDCPVFDGLF FCQ S GGS+ AVK
Sbjct: 67 KYHSDEYIKFLRSIRPDNMSE--YSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVK 124
Query: 179 LNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGV 238
LNR D+AVNWAGGLHHAKKSEASGFCYVNDIVL ILELLK H+RVLY+DID+HHGDGV
Sbjct: 125 LNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGV 184
Query: 239 EEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRP 298
EEAFYTTDRVMTVSFHK+G++FPGTG ++D+GAG+GK+YA+N P+ DG+DDES+ +F+P
Sbjct: 185 EEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKP 244
Query: 299 IIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGY 358
II KVME+YQP AVVLQCGADSLSGDRLGCFNL+VKGHA C+ ++FN+PL++LGGGGY
Sbjct: 245 IISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVAKTFNLPLLMLGGGGY 304
Query: 359 TIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIR 418
TIRNVARCW YETAVA+ E N+LPYN+Y+EYFGPD+ LH+ P NM N N + MEKI+
Sbjct: 305 TIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIK 364
Query: 419 NTLLEQLSGLIHAPSVPFQTTPATTQVPEEPEEDME--------RRPKPRIWNGEDYESD 470
L E L L HAP V Q P + +ED E R RI E++
Sbjct: 365 QRLFENLRMLPHAPGVQMQAIPEDAVHEDSGDEDGEDPDKRISIRASDKRIACDEEFSDS 424
Query: 471 HDE 473
DE
Sbjct: 425 EDE 427
>sp|Q91695|HDA1A_XENLA Probable histone deacetylase 1-A OS=Xenopus laevis GN=hdac1-a PE=1
SV=1
Length = 480
Score = 550 bits (1416), Expect = e-155, Method: Compositional matrix adjust.
Identities = 248/381 (65%), Positives = 320/381 (83%), Gaps = 2/381 (0%)
Query: 59 GKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIR 118
G K++V Y+Y+ +G+YYYGQGHPMKPHRIRM HNL+++YGL+R+ME+ RP A D+
Sbjct: 6 GTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIFRPHKASAEDMT 65
Query: 119 RFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVK 178
++H+D+Y++FL S+ P++ + +S+ ++RFNVGEDCPVFDGLF FCQ SAGGS+ +AVK
Sbjct: 66 KYHSDDYIKFLRSIRPDNMSE--YSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVK 123
Query: 179 LNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGV 238
LN+ DI+VNW+GGLHHAKKSEASGFCYVNDIVL ILELLK H+RV+Y+DID+HHGDGV
Sbjct: 124 LNKQQTDISVNWSGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVVYIDIDIHHGDGV 183
Query: 239 EEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRP 298
EEAFYTTDRVMTVSFHK+G++FPGTG ++D+GAG+GK+YA+N L DG+DDES+ +F+P
Sbjct: 184 EEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYALRDGIDDESYEAIFKP 243
Query: 299 IIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGY 358
++ KVME++QP AVVLQCGADSLSGDRLGCFNL++KGHA C+ F+++FN+PL++LGGGGY
Sbjct: 244 VMSKVMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEFIKTFNLPLLMLGGGGY 303
Query: 359 TIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIR 418
TIRNVARCW YETAVA+ E N+LPYN+Y+EYFGPD+ LH+ P NM N N ++ +EKI+
Sbjct: 304 TIRNVARCWTYETAVALDSEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIK 363
Query: 419 NTLLEQLSGLIHAPSVPFQTT 439
L E L L HAP V Q
Sbjct: 364 QRLFENLRMLPHAPGVQMQAV 384
>sp|P56518|HDAC1_STRPU Histone deacetylase 1 OS=Strongylocentrotus purpuratus GN=HDAC1
PE=2 SV=1
Length = 576
Score = 548 bits (1411), Expect = e-155, Method: Compositional matrix adjust.
Identities = 250/403 (62%), Positives = 325/403 (80%), Gaps = 2/403 (0%)
Query: 59 GKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIR 118
G K+RV Y+Y+ +G+YYYGQGHPMKPHRIRM HNLI++YGL+R+ME+ RP A ++
Sbjct: 5 GTKKRVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLILNYGLYRKMEIYRPHKAVMEEMT 64
Query: 119 RFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVK 178
++H+D+YV+FL ++ P++ + +++ ++RFNVGEDCPVFDGL+ FCQ S+GGS+ AVK
Sbjct: 65 KYHSDDYVKFLRTIRPDNMSE--YTKQMQRFNVGEDCPVFDGLYEFCQLSSGGSVAGAVK 122
Query: 179 LNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGV 238
LN+ DIA+NWAGGLHHAKKSEASGFCYVNDIVL ILELLK H+RVLY+DID+HHGDGV
Sbjct: 123 LNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGV 182
Query: 239 EEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRP 298
EEAFYTTDRVMTVSFHK+G++FPGTG ++D+GAG+GK+YA+N PL DG+DDES+ +F+P
Sbjct: 183 EEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPLRDGIDDESYDKIFKP 242
Query: 299 IIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGY 358
I+ KVME+YQP A+ LQCGADSLSGDRLGCFNL++KGHA C+ F++ +N+PL+++GGGGY
Sbjct: 243 IMCKVMEMYQPSAICLQCGADSLSGDRLGCFNLTLKGHAKCVEFMKQYNLPLLLMGGGGY 302
Query: 359 TIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIR 418
TIRNVARCW YET+ A+GVE N+LPYN+Y+EYFGPD+ LH+ P NM N N + ++KI+
Sbjct: 303 TIRNVARCWTYETSTALGVEIANELPYNDYFEYFGPDFKLHISPSNMTNQNTGEYLDKIK 362
Query: 419 NTLLEQLSGLIHAPSVPFQTTPATTQVPEEPEEDMERRPKPRI 461
L E + + HAP V Q P + ED P RI
Sbjct: 363 TRLYENMRMIPHAPGVQMQPIPEDAIPDDSDAEDEAENPDKRI 405
>sp|O17695|HDA1_CAEEL Histone deacetylase 1 OS=Caenorhabditis elegans GN=hda-1 PE=1 SV=1
Length = 461
Score = 542 bits (1396), Expect = e-153, Method: Compositional matrix adjust.
Identities = 251/410 (61%), Positives = 323/410 (78%), Gaps = 8/410 (1%)
Query: 61 KRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRF 120
KRRV+Y+Y+ IG+YYYGQGH MKPHRIRM H+L+++YGL+R +E+ RPFPA D+ RF
Sbjct: 12 KRRVAYYYDSNIGNYYYGQGHVMKPHRIRMTHHLVLNYGLYRNLEIFRPFPASFEDMTRF 71
Query: 121 HTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLN 180
H+DEY+ FL S +P++ SF++ + +FNVGEDCP+FDGL+ FCQ S+GGS+ AA KLN
Sbjct: 72 HSDEYMTFLKSANPDNL--KSFNKQMLKFNVGEDCPLFDGLYEFCQLSSGGSLAAATKLN 129
Query: 181 RGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEE 240
+ DIA+NW GGLHHAKKSEASGFCY NDIVLGILELLK H+RVLYVDIDVHHGDGVEE
Sbjct: 130 KQKVDIAINWMGGLHHAKKSEASGFCYTNDIVLGILELLKYHKRVLYVDIDVHHGDGVEE 189
Query: 241 AFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPII 300
AFYTTDRVMTVSFHK+GDFFPGTG +KD+GAG+GK Y++NVPL DG+ D S++ +F+PI+
Sbjct: 190 AFYTTDRVMTVSFHKYGDFFPGTGDLKDIGAGKGKLYSVNVPLRDGITDVSYQSIFKPIM 249
Query: 301 QKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTI 360
KVME + P AVVLQCGADSL+GDRLG FNL++KGH +C RF RS+NVPLM++GGGGYT
Sbjct: 250 TKVMERFDPCAVVLQCGADSLNGDRLGPFNLTLKGHGECARFFRSYNVPLMMVGGGGYTP 309
Query: 361 RNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNT 420
RNVARCW YET++AV E N+LPYN+Y+EYFGP+Y LH+E N N N+ + K++
Sbjct: 310 RNVARCWTYETSIAVDKEVPNELPYNDYFEYFGPNYRLHIESSNAANENSSDMLAKLQTD 369
Query: 421 LLEQLSGLIHAPSVPFQTTP--ATTQVPEEP----EEDMERRPKPRIWNG 464
++ L L PSV + P A + + ++ + + ++R P+I +G
Sbjct: 370 VIANLEQLTFVPSVQMRPIPEDALSALNDDSLIADQANPDKRLPPQITDG 419
>sp|P56519|HDAC2_CHICK Histone deacetylase 2 OS=Gallus gallus GN=HDAC2 PE=2 SV=1
Length = 488
Score = 541 bits (1395), Expect = e-153, Method: Compositional matrix adjust.
Identities = 261/423 (61%), Positives = 325/423 (76%), Gaps = 10/423 (2%)
Query: 59 GKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIR 118
G K++V Y+Y+ IG+YYYGQGHPMKPHRIRM HNL+++YGL+R+ME+ RP A ++
Sbjct: 7 GGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMT 66
Query: 119 RFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVK 178
++H+DEY++FL S+ P++ + +S+ ++RFNVGEDCPVFDGLF FCQ S GGS+ AVK
Sbjct: 67 KYHSDEYIKFLRSIRPDNMSE--YSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVK 124
Query: 179 LNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGV 238
LNR D+AVNWAGGLHHAKKSEASGFCYVNDIVL ILELLK H+RVLY+DID+HHGDGV
Sbjct: 125 LNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGV 184
Query: 239 EEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRP 298
EEAFYTTDRVMTVS + FPGTG ++D+GAG+GK+YA+N P+ DG+DDES+ +F+P
Sbjct: 185 EEAFYTTDRVMTVSEVSMVNNFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKP 244
Query: 299 IIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGY 358
II KVME+YQP AVVLQCGADSLSGDRLGCFNL+VKGHA C+ +++FN+PL++LGGGGY
Sbjct: 245 IISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGY 304
Query: 359 TIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIR 418
TIRNVARCW YETAVA+ E N+LPYN+Y+EYFGPD+ LH+ P NM N N + MEKI+
Sbjct: 305 TIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIK 364
Query: 419 NTLLEQLSGLIHAPSVPFQTTPATTQVPEEPEEDME--------RRPKPRIWNGEDYESD 470
L E L L HAP V Q P + +ED E R RI E++
Sbjct: 365 QRLFENLRMLPHAPGVQMQAIPEDAVHEDSGDEDGEDPDKRISIRASDKRIACDEEFSDS 424
Query: 471 HDE 473
DE
Sbjct: 425 EDE 427
>sp|Q55FN5|HDA11_DICDI Type-1 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaA
PE=2 SV=1
Length = 495
Score = 540 bits (1391), Expect = e-152, Method: Compositional matrix adjust.
Identities = 238/379 (62%), Positives = 310/379 (81%), Gaps = 2/379 (0%)
Query: 62 RRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFH 121
R+VSYFY+ +G++YYG HPMKPHR+RM H+L+++YG++++M++ RP A ++ FH
Sbjct: 4 RKVSYFYDNEVGNHYYGPNHPMKPHRMRMTHDLVLNYGIYKKMQIFRPRKASELELTNFH 63
Query: 122 TDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNR 181
+D+Y+ FL V+P++ D +S+ L +FNV EDCPVFDG++ FCQ S+GGSIG AVK+N
Sbjct: 64 SDDYINFLKLVTPDNMHD--YSKQLVKFNVREDCPVFDGMYNFCQISSGGSIGCAVKVNS 121
Query: 182 GDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEA 241
++D+A+NWAGGLHHAKKSEASGFCY NDIVL ILELLK H RVLY+DID+HHGDGVEEA
Sbjct: 122 KESDVAINWAGGLHHAKKSEASGFCYTNDIVLSILELLKHHERVLYIDIDIHHGDGVEEA 181
Query: 242 FYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPIIQ 301
FYTTDRVMTVSFHK+GD+FPGTG +KD+GA +GK+Y+LN PL DG+DDES++ +FRPII+
Sbjct: 182 FYTTDRVMTVSFHKYGDYFPGTGDVKDIGADKGKYYSLNFPLKDGIDDESYQSIFRPIIR 241
Query: 302 KVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIR 361
VM+ Y+P AVV+QCGADSL+GDRLGCFNL+++GHA C+ FL+SFNVPL+VLGGGGYTI+
Sbjct: 242 SVMDFYRPGAVVIQCGADSLTGDRLGCFNLTLRGHAQCIEFLKSFNVPLVVLGGGGYTIK 301
Query: 362 NVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTL 421
NVARCW YET++ V E ++LPYN+Y EY+GP+Y LH+ P NMEN N +EK++ L
Sbjct: 302 NVARCWTYETSILVDSELKDELPYNDYLEYYGPEYRLHITPNNMENQNTKDYLEKLKIQL 361
Query: 422 LEQLSGLIHAPSVPFQTTP 440
LE L L HAP+ P
Sbjct: 362 LENLRNLNHAPAAAHHDIP 380
>sp|Q9FH09|HDA7_ARATH Histone deacetylase 7 OS=Arabidopsis thaliana GN=HDA7 PE=2 SV=1
Length = 409
Score = 537 bits (1383), Expect = e-152, Method: Compositional matrix adjust.
Identities = 260/413 (62%), Positives = 311/413 (75%), Gaps = 8/413 (1%)
Query: 53 LVSGPDGKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPA 112
+ S DG KRRVSYFYEP IGDYYYG P KP RIR+ HNLI+ Y LHR ME+N P A
Sbjct: 1 MASLADGGKRRVSYFYEPMIGDYYYGVNQPTKPQRIRVTHNLILSYNLHRHMEINHPDLA 60
Query: 113 GPSDIRRFHTDEYVEFLASVSPESSGDP--SFSRHLKRFNVGEDC--PVFDGLFGFCQAS 168
SD +FH+ EY+ FL SV+PE+ DP S S +LKRFNV D PVF LF +C+A
Sbjct: 61 DASDFEKFHSLEYINFLKSVTPETVTDPHPSVSENLKRFNVDVDWDGPVFHNLFDYCRAY 120
Query: 169 AGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYV 228
AGGSI AA KLNR +ADIA+NWAGG+HH KK +ASGF YVND+VL ILELLK +RVLY+
Sbjct: 121 AGGSISAAAKLNRQEADIAINWAGGMHHVKKDKASGFGYVNDVVLAILELLKSFKRVLYI 180
Query: 229 DIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLD 288
+I HGD VEEAF TDRVMTVSFHK GD TG I D G G+G++Y+LN PL DGLD
Sbjct: 181 EIGFPHGDEVEEAFKDTDRVMTVSFHKVGD----TGDISDYGEGKGQYYSLNAPLKDGLD 236
Query: 289 DESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNV 348
D S RGLF P+I + ME+Y+P+ +VLQCGADSL+GD G FNLS+KGH DCL+++RSFNV
Sbjct: 237 DFSLRGLFIPVIHRAMEIYEPEVIVLQCGADSLAGDPFGTFNLSIKGHGDCLQYVRSFNV 296
Query: 349 PLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENL 408
PLM+LGGGGYT+ NVARCWCYETA+AVG + DN LP N+Y +YF PDY LH+ P N +NL
Sbjct: 297 PLMILGGGGYTLPNVARCWCYETAIAVGEQLDNDLPGNDYMKYFRPDYKLHILPTNRQNL 356
Query: 409 NAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPEEPEEDMERRPKPRI 461
N D+ +R TLL QLS ++HAPSVPFQ TP+++Q E E DME+R PRI
Sbjct: 357 NTRLDIITMRETLLAQLSLVMHAPSVPFQDTPSSSQATEAAEVDMEKRNDPRI 409
>sp|P32561|RPD3_YEAST Histone deacetylase RPD3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPD3 PE=1 SV=1
Length = 433
Score = 527 bits (1358), Expect = e-149, Method: Compositional matrix adjust.
Identities = 240/392 (61%), Positives = 308/392 (78%), Gaps = 2/392 (0%)
Query: 61 KRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRF 120
KRRV+YFY+ +G+Y YG GHPMKPHRIRMAH+LI++YGL+++ME+ R PA ++ +F
Sbjct: 18 KRRVAYFYDADVGNYAYGAGHPMKPHRIRMAHSLIMNYGLYKKMEIYRAKPATKQEMCQF 77
Query: 121 HTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLN 180
HTDEY++FL+ V+P++ F R +FNVG+DCPVFDGL+ +C S GGS+ A +LN
Sbjct: 78 HTDEYIDFLSRVTPDNL--EMFKRESVKFNVGDDCPVFDGLYEYCSISGGGSMEGAARLN 135
Query: 181 RGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEE 240
RG D+AVN+AGGLHHAKKSEASGFCY+NDIVLGI+ELL+ H RVLY+DIDVHHGDGVEE
Sbjct: 136 RGKCDVAVNYAGGLHHAKKSEASGFCYLNDIVLGIIELLRYHPRVLYIDIDVHHGDGVEE 195
Query: 241 AFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPII 300
AFYTTDRVMT SFHK+G+FFPGTG ++D+G G GK YA+NVPL DG+DD ++R +F P+I
Sbjct: 196 AFYTTDRVMTCSFHKYGEFFPGTGELRDIGVGAGKNYAVNVPLRDGIDDATYRSVFEPVI 255
Query: 301 QKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTI 360
+K+ME YQP AVVLQCG DSLSGDRLGCFNLS++GHA+C+ +++SF +P+MV+GGGGYT+
Sbjct: 256 KKIMEWYQPSAVVLQCGGDSLSGDRLGCFNLSMEGHANCVNYVKSFGIPMMVVGGGGYTM 315
Query: 361 RNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNT 420
RNVAR WC+ET + V D LPYNEYYEY+GPDY L V P NM N+N + ++K+
Sbjct: 316 RNVARTWCFETGLLNNVVLDKDLPYNEYYEYYGPDYKLSVRPSNMFNVNTPEYLDKVMTN 375
Query: 421 LLEQLSGLIHAPSVPFQTTPATTQVPEEPEED 452
+ L +APSV TP + + EED
Sbjct: 376 IFANLENTKYAPSVQLNHTPRDAEDLGDVEED 407
>sp|O59702|CLR6_SCHPO Histone deacetylase clr6 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=clr6 PE=1 SV=1
Length = 405
Score = 513 bits (1322), Expect = e-145, Method: Compositional matrix adjust.
Identities = 234/381 (61%), Positives = 297/381 (77%), Gaps = 2/381 (0%)
Query: 61 KRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRF 120
K++VSYFY+ +G+Y+YG HPMKPHR+RM HNL+V+Y L+ ++ V P A +D+ R
Sbjct: 5 KKKVSYFYDEDVGNYHYGPQHPMKPHRVRMVHNLVVNYNLYEKLNVITPVRATRNDMTRC 64
Query: 121 HTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLN 180
HTDEY+EFL V+P++ F H +FNVG+DCPVFDGL+ FC SAGGSIGAA +LN
Sbjct: 65 HTDEYIEFLWRVTPDTM--EKFQPHQLKFNVGDDCPVFDGLYEFCSISAGGSIGAAQELN 122
Query: 181 RGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEE 240
G+A+IA+NWAGGLHHAKK EASGFCYVNDI L LELLK H+RVLY+DIDVHHGDGVEE
Sbjct: 123 SGNAEIAINWAGGLHHAKKREASGFCYVNDIALAALELLKYHQRVLYIDIDVHHGDGVEE 182
Query: 241 AFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPII 300
FYTTDRVMT SFHKFG++FPGTGHIKD G G GK YA+NVPL DG+DDES+ +F+P+I
Sbjct: 183 FFYTTDRVMTCSFHKFGEYFPGTGHIKDTGIGTGKNYAVNVPLRDGIDDESYESVFKPVI 242
Query: 301 QKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTI 360
+M+ ++P+AV+LQCG DSL+GDRLGCFNLS+KGH+ C+ F++SFN+P++ +GGGGYT+
Sbjct: 243 SHIMQWFRPEAVILQCGTDSLAGDRLGCFNLSMKGHSMCVDFVKSFNLPMICVGGGGYTV 302
Query: 361 RNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNT 420
RNVAR W YET + G E D LPYN+Y +Y+GPDY L+V NMEN N + ++ I +
Sbjct: 303 RNVARVWTYETGLLAGEELDENLPYNDYLQYYGPDYKLNVLSNNMENHNTRQYLDSITSE 362
Query: 421 LLEQLSGLIHAPSVPFQTTPA 441
++E L L APSV TP
Sbjct: 363 IIENLRNLSFAPSVQMHKTPG 383
>sp|Q28DV3|HDAC3_XENTR Histone deacetylase 3 OS=Xenopus tropicalis GN=hdac3 PE=2 SV=1
Length = 428
Score = 502 bits (1293), Expect = e-141, Method: Compositional matrix adjust.
Identities = 236/424 (55%), Positives = 318/424 (75%), Gaps = 16/424 (3%)
Query: 62 RRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFH 121
+ V+YFY+P +G+++YG GHPMKPHR+ + H+L++HYGL+++M V +P+ A D+ RFH
Sbjct: 3 KTVAYFYDPDVGNFHYGTGHPMKPHRLSLTHSLVLHYGLYKKMIVFKPYQASQHDMCRFH 62
Query: 122 TDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNR 181
+++Y++FL VSP + F++ L FNVG+DCPVF GLF FC G S+ A +LN
Sbjct: 63 SEDYIDFLQRVSPNNM--QGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNN 120
Query: 182 GDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEA 241
DIA+NWAGGLHHAKK EASGFCYVNDIV+GILELLK H RVLYVDID+HHGDGV+EA
Sbjct: 121 KICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYVDIDIHHGDGVQEA 180
Query: 242 FYTTDRVMTVSFHKFGD-FFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPII 300
FY TDRVMTVSFHK+G+ FFPGTG + +VGA G++Y LNVPL DG+DD+S+R LF+P+I
Sbjct: 181 FYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRHLFQPVI 240
Query: 301 QKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTI 360
++V++ YQP +VLQCGADSL DRLGCFNLS++GH +C+++++SFN+PL+VLGGGGYT+
Sbjct: 241 KQVIDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVQYVKSFNIPLLVLGGGGYTV 300
Query: 361 RNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVE-PCNMENLNAHKDMEKIRN 419
RNVARCW YET++ V +LPY+EY+EYF PD+TLH + +EN N+ + +++IR
Sbjct: 301 RNVARCWTYETSLLVDETISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQ 360
Query: 420 TLLEQLSGLIHAPSVPFQTTPA---TTQVPEEPE------EDMERRPKPRIWNGEDYESD 470
T+ E L L HAPSV P+ + + +EP+ ED RP+ + E Y+ D
Sbjct: 361 TIFENLKMLNHAPSVQIHDVPSDILSYERTDEPDPEERGSEDNYSRPEA---SNEFYDGD 417
Query: 471 HDED 474
HD D
Sbjct: 418 HDND 421
>sp|Q6IRL9|HDAC3_XENLA Histone deacetylase 3 OS=Xenopus laevis GN=hdac3 PE=2 SV=2
Length = 428
Score = 500 bits (1288), Expect = e-141, Method: Compositional matrix adjust.
Identities = 235/424 (55%), Positives = 317/424 (74%), Gaps = 16/424 (3%)
Query: 62 RRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFH 121
+ V+YFY+P +G+++YG GHPMKPHR+ + H+L++HYGL+++M V +P+ A D+ RFH
Sbjct: 3 KTVAYFYDPDVGNFHYGTGHPMKPHRLSLTHSLVLHYGLYKKMIVFKPYQASQHDMCRFH 62
Query: 122 TDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNR 181
+++Y++FL VSP + F++ L FNVG+DCPVF GLF FC G S+ A LN
Sbjct: 63 SEDYIDFLQRVSPNNM--QGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATLLNN 120
Query: 182 GDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEA 241
+ DIA+NWAGGLHHAKK EASGFCYVNDIV+GILELLK H RVLY+DID+HHGDGV+EA
Sbjct: 121 KNCDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEA 180
Query: 242 FYTTDRVMTVSFHKFGD-FFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPII 300
FY TDRVMTVSFHK+G+ FFPGTG + +VGA G++Y LNVPL DG+DD+S+R LF+P+I
Sbjct: 181 FYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRHLFQPVI 240
Query: 301 QKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTI 360
++V++ YQP +VLQCGADSL DRLGCFNLS++GH +C+++++SFN+PL+VLGGGGYT+
Sbjct: 241 KQVIDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVQYVKSFNIPLLVLGGGGYTV 300
Query: 361 RNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVE-PCNMENLNAHKDMEKIRN 419
RNVARCW YET++ V +LPY+EY+EYF PD+TLH + +EN N+ + +++IR
Sbjct: 301 RNVARCWTYETSLLVDETISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQ 360
Query: 420 TLLEQLSGLIHAPSVPFQTTPATT---QVPEEPE------EDMERRPKPRIWNGEDYESD 470
T+ E L L HAPSV P+ + +EP+ ED RP+ + E Y+ D
Sbjct: 361 TVFESLKMLNHAPSVQIHDVPSDILNYERTDEPDPEERGGEDNYSRPEA---SNEFYDGD 417
Query: 471 HDED 474
HD D
Sbjct: 418 HDND 421
>sp|Q6P6W3|HDAC3_RAT Histone deacetylase 3 OS=Rattus norvegicus GN=Hdac3 PE=1 SV=1
Length = 428
Score = 499 bits (1285), Expect = e-140, Method: Compositional matrix adjust.
Identities = 236/425 (55%), Positives = 313/425 (73%), Gaps = 18/425 (4%)
Query: 62 RRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFH 121
+ V+YFY+P +G+++YG GHPMKPHR+ + H+L++HYGL+++M V +P+ A D+ RFH
Sbjct: 3 KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFH 62
Query: 122 TDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNR 181
+++Y++FL VSP + F++ L FNVG+DCPVF GLF FC G S+ A +LN
Sbjct: 63 SEDYIDFLQRVSPTNM--QGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNN 120
Query: 182 GDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEA 241
DIA+NWAGGLHHAKK EASGFCYVNDIV+GILELLK H RVLY+DID+HHGDGV+EA
Sbjct: 121 KICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEA 180
Query: 242 FYTTDRVMTVSFHKFGD-FFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPII 300
FY TDRVMTVSFHK+G+ FFPGTG + +VGA G++Y LNVPL DG+DD+S++ LF+P+I
Sbjct: 181 FYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVI 240
Query: 301 QKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTI 360
+V++ YQP +VLQCGADSL DRLGCFNLS++GH +C+ +++SFN+PL+VLGGGGYT+
Sbjct: 241 SQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTV 300
Query: 361 RNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVE-PCNMENLNAHKDMEKIRN 419
RNVARCW YET++ V +LPY+EY+EYF PD+TLH + +EN N+ + +++IR
Sbjct: 301 RNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQ 360
Query: 420 TLLEQLSGLIHAPSVPFQTTPA-------TTQVPEE---PEEDMERRPKPRIWNGEDYES 469
T+ E L L HAPSV PA T + E PEE+ R P E Y+
Sbjct: 361 TIFENLKMLNHAPSVQIHDVPADLLTYDRTDEADAEERGPEENYSRPEAPN----EFYDG 416
Query: 470 DHDED 474
DHD D
Sbjct: 417 DHDND 421
>sp|O15379|HDAC3_HUMAN Histone deacetylase 3 OS=Homo sapiens GN=HDAC3 PE=1 SV=2
Length = 428
Score = 499 bits (1285), Expect = e-140, Method: Compositional matrix adjust.
Identities = 236/425 (55%), Positives = 313/425 (73%), Gaps = 18/425 (4%)
Query: 62 RRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFH 121
+ V+YFY+P +G+++YG GHPMKPHR+ + H+L++HYGL+++M V +P+ A D+ RFH
Sbjct: 3 KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFH 62
Query: 122 TDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNR 181
+++Y++FL VSP + F++ L FNVG+DCPVF GLF FC G S+ A +LN
Sbjct: 63 SEDYIDFLQRVSPTNM--QGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNN 120
Query: 182 GDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEA 241
DIA+NWAGGLHHAKK EASGFCYVNDIV+GILELLK H RVLY+DID+HHGDGV+EA
Sbjct: 121 KICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEA 180
Query: 242 FYTTDRVMTVSFHKFGD-FFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPII 300
FY TDRVMTVSFHK+G+ FFPGTG + +VGA G++Y LNVPL DG+DD+S++ LF+P+I
Sbjct: 181 FYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVI 240
Query: 301 QKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTI 360
+V++ YQP +VLQCGADSL DRLGCFNLS++GH +C+ +++SFN+PL+VLGGGGYT+
Sbjct: 241 NQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTV 300
Query: 361 RNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVE-PCNMENLNAHKDMEKIRN 419
RNVARCW YET++ V +LPY+EY+EYF PD+TLH + +EN N+ + +++IR
Sbjct: 301 RNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQ 360
Query: 420 TLLEQLSGLIHAPSVPFQTTPA-------TTQVPEE---PEEDMERRPKPRIWNGEDYES 469
T+ E L L HAPSV PA T + E PEE+ R P E Y+
Sbjct: 361 TIFENLKMLNHAPSVQIHDVPADLLTYDRTDEADAEERGPEENYSRPEAPN----EFYDG 416
Query: 470 DHDED 474
DHD D
Sbjct: 417 DHDND 421
>sp|O88895|HDAC3_MOUSE Histone deacetylase 3 OS=Mus musculus GN=Hdac3 PE=1 SV=1
Length = 424
Score = 499 bits (1285), Expect = e-140, Method: Compositional matrix adjust.
Identities = 236/425 (55%), Positives = 313/425 (73%), Gaps = 18/425 (4%)
Query: 62 RRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFH 121
+ V+YFY+P +G+++YG GHPMKPHR+ + H+L++HYGL+++M V +P+ A D+ RFH
Sbjct: 3 KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFH 62
Query: 122 TDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNR 181
+++Y++FL VSP + F++ L FNVG+DCPVF GLF FC G S+ A +LN
Sbjct: 63 SEDYIDFLQRVSPTNM--QGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNN 120
Query: 182 GDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEA 241
DIA+NWAGGLHHAKK EASGFCYVNDIV+GILELLK H RVLY+DID+HHGDGV+EA
Sbjct: 121 KICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEA 180
Query: 242 FYTTDRVMTVSFHKFGD-FFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPII 300
FY TDRVMTVSFHK+G+ FFPGTG + +VGA G++Y LNVPL DG+DD+S++ LF+P+I
Sbjct: 181 FYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVI 240
Query: 301 QKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTI 360
+V++ YQP +VLQCGADSL DRLGCFNLS++GH +C+ +++SFN+PL+VLGGGGYT+
Sbjct: 241 SQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTV 300
Query: 361 RNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVE-PCNMENLNAHKDMEKIRN 419
RNVARCW YET++ V +LPY+EY+EYF PD+TLH + +EN N+ + +++IR
Sbjct: 301 RNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQ 360
Query: 420 TLLEQLSGLIHAPSVPFQTTPA-------TTQVPEE---PEEDMERRPKPRIWNGEDYES 469
T+ E L L HAPSV PA T + E PEE+ R P E Y+
Sbjct: 361 TIFENLKMLNHAPSVQIHDVPADLLTYDRTDEADAEERGPEENYSRPEAPN----EFYDG 416
Query: 470 DHDED 474
DHD D
Sbjct: 417 DHDND 421
>sp|Q5RB76|HDAC3_PONAB Histone deacetylase 3 OS=Pongo abelii GN=HDAC3 PE=2 SV=1
Length = 428
Score = 499 bits (1285), Expect = e-140, Method: Compositional matrix adjust.
Identities = 236/425 (55%), Positives = 314/425 (73%), Gaps = 18/425 (4%)
Query: 62 RRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFH 121
+ V+YFY+P +G+++YG GHPMKPHR+ + H+L++HYGL+++M V +P+ A D+ RFH
Sbjct: 3 KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFH 62
Query: 122 TDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNR 181
+++Y++FL VSP + F++ L FNVG+DCPVF GLF FC G S+ A +LN
Sbjct: 63 SEDYIDFLQRVSPTNM--QGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNN 120
Query: 182 GDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEA 241
DIA+NWAGGLHHAKK EASGFCYVNDIV+GILELLK H RVLY+DID+HHGDGV+EA
Sbjct: 121 KICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEA 180
Query: 242 FYTTDRVMTVSFHKFGD-FFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPII 300
FY TDRVMTVSFHK+G+ FFPGTG + +VGA G++Y LNVPL DG+DD+S++ LF+P+I
Sbjct: 181 FYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVI 240
Query: 301 QKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTI 360
+V++ YQP +VLQCGADSL DRLGCFNLS++GH +C+ +++SFN+PL+VLGGGGYT+
Sbjct: 241 NQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTV 300
Query: 361 RNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVE-PCNMENLNAHKDMEKIRN 419
RNVARCW YET++ V +LPY+EY+EYF PD+TLH + +EN N+ + +++IR
Sbjct: 301 RNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQ 360
Query: 420 TLLEQLSGLIHAPSVPFQTTPA-------TTQVPEE---PEEDMERRPKPRIWNGEDYES 469
T+ E L L HAPSV + PA T + E PEE+ R P E Y+
Sbjct: 361 TIFENLKMLNHAPSVQIRDVPAGLLTYDRTDEADAEERGPEENYSRPEAPN----EFYDG 416
Query: 470 DHDED 474
DHD D
Sbjct: 417 DHDND 421
>sp|P56520|HDAC3_CHICK Histone deacetylase 3 OS=Gallus gallus GN=HDAC3 PE=2 SV=1
Length = 428
Score = 499 bits (1285), Expect = e-140, Method: Compositional matrix adjust.
Identities = 237/423 (56%), Positives = 315/423 (74%), Gaps = 14/423 (3%)
Query: 62 RRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFH 121
+ V+YFY+P +G+++YG GHPMKPHR+ + H+L++HYGL+++M V +P+ A D+ RFH
Sbjct: 3 KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFH 62
Query: 122 TDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNR 181
+++Y++FL VSP + F++ L FNVG+DCPVF GLF FC G S+ A +LN
Sbjct: 63 SEDYIDFLQRVSPNNM--QGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNN 120
Query: 182 GDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEA 241
DIA+NWAGGLHHAKK EASGFCYVNDIV+GILELLK H RVLY+DID+HHGDGV+EA
Sbjct: 121 KICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEA 180
Query: 242 FYTTDRVMTVSFHKFGD-FFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPII 300
FY TDRVMTVSFHK+G+ FFPGTG + +VGA G++YALNVPL DG+DD+S++ LF+P+I
Sbjct: 181 FYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYALNVPLRDGIDDQSYKHLFQPVI 240
Query: 301 QKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTI 360
+V++ YQP +VLQCGADSL DRLGCFNLS++GH +C+ +++SFN+PL+VLGGGGYT+
Sbjct: 241 NQVVDYYQPTCIVLQCGADSLGRDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTV 300
Query: 361 RNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVE-PCNMENLNAHKDMEKIRN 419
RNVARCW YET++ V +LPY+EY+EYF PD+TLH + +EN N+ + +++IR
Sbjct: 301 RNVARCWTYETSLLVDEAISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQ 360
Query: 420 TLLEQLSGLIHAPSVPFQTTPAT------TQVPEEPEE--DMERRPKPRIWNGEDYESDH 471
T+ E L L HAPSV P+ T P +PEE E +P N E Y+ DH
Sbjct: 361 TIFENLKMLNHAPSVQIHDVPSDLLSYDRTDEP-DPEERGSEENYSRPEAAN-EFYDGDH 418
Query: 472 DED 474
D D
Sbjct: 419 DND 421
>sp|Q4SFA0|HDAC3_TETNG Histone deacetylase 3 OS=Tetraodon nigroviridis GN=hdac3 PE=3 SV=1
Length = 428
Score = 498 bits (1283), Expect = e-140, Method: Compositional matrix adjust.
Identities = 234/421 (55%), Positives = 313/421 (74%), Gaps = 12/421 (2%)
Query: 63 RVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHT 122
R SYFY+P +G+++YG GHPMKPHR+ + H+L++HYGL+++M V +P+ A D+ RFH+
Sbjct: 4 RTSYFYDPDVGNFHYGAGHPMKPHRLSLTHSLVLHYGLYKKMMVFKPYKASQHDMCRFHS 63
Query: 123 DEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRG 182
++Y++FL VSP + F++ L FNVG+DCPVF GLF FC G S+ A +LN
Sbjct: 64 EDYIDFLQKVSPNNM--QGFTKSLNTFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNHK 121
Query: 183 DADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAF 242
DIA+NWAGGLHHAKK EASGFCYVNDIV+ ILELLK H RVLY+DID+HHGDGV+EAF
Sbjct: 122 ICDIAINWAGGLHHAKKFEASGFCYVNDIVISILELLKYHPRVLYIDIDIHHGDGVQEAF 181
Query: 243 YTTDRVMTVSFHKFGD-FFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPIIQ 301
Y TDRVMTVSFHK+G+ FFPGTG + +VGA G++Y LNVPL DG+DD+S+R LF+P+I+
Sbjct: 182 YLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRQLFQPVIK 241
Query: 302 KVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIR 361
+V++ YQP +VLQCGADSL DRLGCFNLS++GH +C+ F++SF +PL+VLGGGGYT+R
Sbjct: 242 QVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEFVKSFKIPLLVLGGGGYTVR 301
Query: 362 NVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVE-PCNMENLNAHKDMEKIRNT 420
NVARCW +ET++ + ++LPY+EY+EYF PD+TLH + +EN N+ + +E+IR T
Sbjct: 302 NVARCWTFETSLLLEESISDELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLEQIRQT 361
Query: 421 LLEQLSGLIHAPSVPFQTTPA---TTQVPEEPEED----MERRPKPRIWNGEDYESDHDE 473
+ E L L HAPSV P+ + +EP+ D E +P N E Y+ DHD
Sbjct: 362 VFENLKMLNHAPSVQIHDVPSDMLNYERNDEPDPDERGAEENYTRPEAAN-EFYDGDHDN 420
Query: 474 D 474
D
Sbjct: 421 D 421
>sp|Q803C3|HDAC3_DANRE Histone deacetylase 3 OS=Danio rerio GN=hdac3 PE=2 SV=1
Length = 428
Score = 498 bits (1282), Expect = e-140, Method: Compositional matrix adjust.
Identities = 235/421 (55%), Positives = 312/421 (74%), Gaps = 12/421 (2%)
Query: 63 RVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHT 122
R +YFY+P +G+++YG GHPMKPHR+ + H+L++HYGL+++M V +P+ A D+ RFH+
Sbjct: 4 RTAYFYDPDVGNFHYGAGHPMKPHRLSLTHSLVLHYGLYKKMMVFKPYKASQHDMCRFHS 63
Query: 123 DEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRG 182
++Y++FL VSP + F++ L FNVG DCPVF GLF FC G S+ A +LN
Sbjct: 64 EDYIDFLQKVSPNNM--QGFTKSLNTFNVGGDCPVFPGLFEFCSRYTGASLQGATQLNHK 121
Query: 183 DADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAF 242
DIA+NWAGGLHHAKK EASGFCYVNDIV+ ILELLK H RVLY+DID+HHGDGV+EAF
Sbjct: 122 ICDIAINWAGGLHHAKKFEASGFCYVNDIVISILELLKYHPRVLYIDIDIHHGDGVQEAF 181
Query: 243 YTTDRVMTVSFHKFGD-FFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPIIQ 301
Y TDRVMTVSFHK+G+ FFPGTG + +VGA G++Y LNVPL DG+DD+S+R LF+P+I+
Sbjct: 182 YLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRQLFQPVIK 241
Query: 302 KVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIR 361
+V++ YQP +VLQCGADSL DRLGCFNLS++GH +C+ F++ F +PL+VLGGGGYT+R
Sbjct: 242 QVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEFVKGFKIPLLVLGGGGYTVR 301
Query: 362 NVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVE-PCNMENLNAHKDMEKIRNT 420
NVARCW +ET++ V ++LPY+EY+EYF PD+TLH + +EN N+ + +E+IR T
Sbjct: 302 NVARCWTFETSLLVEESISDELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLEQIRQT 361
Query: 421 LLEQLSGLIHAPSVPFQTTPATTQVPEEPEE-DMERR------PKPRIWNGEDYESDHDE 473
+ E L L HAPSV + P+ E P+E D E R +P N E Y+ DHD
Sbjct: 362 VFENLKMLNHAPSVQIRDVPSDLLSYERPDEADPEERGSEENFSRPEAAN-EFYDGDHDH 420
Query: 474 D 474
D
Sbjct: 421 D 421
>sp|Q8H0W2|HDA9_ARATH Histone deacetylase 9 OS=Arabidopsis thaliana GN=HDA9 PE=2 SV=1
Length = 426
Score = 494 bits (1271), Expect = e-139, Method: Compositional matrix adjust.
Identities = 238/423 (56%), Positives = 306/423 (72%), Gaps = 11/423 (2%)
Query: 61 KRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRF 120
K ++SYFY+ +G Y+G HPMKPHR+ M H+LI+ YGLH +MEV RP A P ++ +F
Sbjct: 4 KDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLILAYGLHSKMEVYRPHKAYPIEMAQF 63
Query: 121 HTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLN 180
H+ +YVEFL ++PE+ F + R+N+GEDCPVF+ LF FCQ AGG+I AA +LN
Sbjct: 64 HSPDYVEFLQRINPENQN--LFPNEMARYNLGEDCPVFEDLFEFCQLYAGGTIDAARRLN 121
Query: 181 RGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEE 240
DIA+NWAGGLHHAKK +ASGFCY+ND+VLGILELLK H RVLY+DIDVHHGDGVEE
Sbjct: 122 NKLCDIAINWAGGLHHAKKCDASGFCYINDLVLGILELLKHHPRVLYIDIDVHHGDGVEE 181
Query: 241 AFYTTDRVMTVSFHKFGD-FFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPI 299
AFY TDRVMTVSFHKFGD FFPGTG +K++G +GKFYA+NVPL DG+DD SF LFR I
Sbjct: 182 AFYFTDRVMTVSFHKFGDKFFPGTGDVKEIGEREGKFYAINVPLKDGIDDSSFNRLFRTI 241
Query: 300 IQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYT 359
I KV+E+YQP A+VLQCGADSL+ DRLGCFNLS+ GHA+C++F++ FN+PL+V GGGGYT
Sbjct: 242 ISKVVEIYQPGAIVLQCGADSLARDRLGCFNLSIDGHAECVKFVKKFNLPLLVTGGGGYT 301
Query: 360 IRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRN 419
NVARCW ET + + E N++P N+Y +YF PD++L + ++ENLN + I+
Sbjct: 302 KENVARCWTVETGILLDTELPNEIPENDYIKYFAPDFSLKIPGGHIENLNTKSYISSIKV 361
Query: 420 TLLEQLSGLIHAPSVPFQTTPATTQVPEEPEE--------DMERRPKPRIWNGEDYESDH 471
+LE L + HAPSV Q P +P+ E+ D R K + E ++ D+
Sbjct: 362 QILENLRYIQHAPSVQMQEVPPDFYIPDFDEDEQNPDVRADQRSRDKQIQRDDEYFDGDN 421
Query: 472 DED 474
D D
Sbjct: 422 DND 424
>sp|Q55BW2|HDA12_DICDI Histone deacetylase B OS=Dictyostelium discoideum GN=hdaB PE=2 SV=1
Length = 422
Score = 484 bits (1247), Expect = e-136, Method: Compositional matrix adjust.
Identities = 227/408 (55%), Positives = 304/408 (74%), Gaps = 13/408 (3%)
Query: 61 KRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRF 120
K RV YF++ +G+Y+YG HPMKPHR+ + +NL+++YGLH++M + + PA D+ +F
Sbjct: 12 KTRVCYFFDQDVGNYFYGPYHPMKPHRLCLTNNLVLNYGLHKKMHLYKARPADAEDMLKF 71
Query: 121 HTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLN 180
H+++YV+FL V+PE+ + + +KRF++GEDCPVF GL+ +C +GGSI A+KLN
Sbjct: 72 HSEDYVDFLERVTPENINE---WKDVKRFHIGEDCPVFPGLYDYCSIYSGGSIEGALKLN 128
Query: 181 RGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEE 240
DIA+NW+GGLHHA+K EASGFCYVNDIVL ILELLK H RVLY+DIDVHHGDGV+E
Sbjct: 129 HRMYDIAINWSGGLHHARKDEASGFCYVNDIVLAILELLKFHARVLYIDIDVHHGDGVQE 188
Query: 241 AFYTTDRVMTVSFHKFG-DFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPI 299
AFY TDRVMTVSFHKFG DFFPGTG I ++GA GK Y++NVPL DG+DD+++ +F+P+
Sbjct: 189 AFYLTDRVMTVSFHKFGGDFFPGTGDIDEIGAKTGKLYSVNVPLADGIDDKNYLNIFKPV 248
Query: 300 IQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYT 359
IQ VM+ Y+P +VLQCGADSL DRLGCFNL++KGHA+C+RF++SFN+P +VLGGGGYT
Sbjct: 249 IQGVMDYYRPSVIVLQCGADSLRFDRLGCFNLTIKGHAECVRFVKSFNIPTLVLGGGGYT 308
Query: 360 IRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVE----PCNMENLNAHKDME 415
+RNVARCW YET+V V E +N+LPYN+Y +++ PD+ L + P EN N +E
Sbjct: 309 VRNVARCWTYETSVCVDTEVNNELPYNDYIQFYSPDFQLIPDYTGLPFKYENANTKSYLE 368
Query: 416 KIRNTLLEQLSGLIHAPSVPFQTTPATTQ-----VPEEPEEDMERRPK 458
+R +LE L L APSV Q P E+ +E+M++R K
Sbjct: 369 SLRIKILENLRILQWAPSVQIQDVPPDIMPIDFDRDEDSKENMDKRKK 416
>sp|O13298|PHD1_SCHPO Histone deacetylase phd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=phd1 PE=1 SV=1
Length = 434
Score = 439 bits (1129), Expect = e-122, Method: Compositional matrix adjust.
Identities = 210/396 (53%), Positives = 283/396 (71%), Gaps = 7/396 (1%)
Query: 60 KKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRR 119
+K+RV+Y + +G+Y+YG HPMKPHRI + ++L++ YGLH +M V P A ++
Sbjct: 24 QKKRVTYHLDEQVGNYHYGDKHPMKPHRITITNHLVMGYGLHNKMSVFSPRMATFGEMSE 83
Query: 120 FHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKL 179
FH ++Y++FL V+P+++ F+ ++FN+G+DCPVFDG + F Q SAG S+ A+ KL
Sbjct: 84 FHREDYLDFLKRVTPDNA--EQFADKFQQFNIGDDCPVFDGTYEFSQRSAGASLDASRKL 141
Query: 180 NRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVE 239
+G DIA+NW+GGLHHAK+ EASGFCYVNDIVL IL +L+ RVLY+DID+HHGDGV+
Sbjct: 142 VQGQTDIAINWSGGLHHAKRGEASGFCYVNDIVLAILNMLRFFPRVLYIDIDIHHGDGVQ 201
Query: 240 EAFYTTDRVMTVSFHKF-GDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRP 298
+AFY +DRV+TVSFHK+ GDFFP TG+ + G GK++ALNVPL DG+ DE + LF+
Sbjct: 202 QAFYESDRVLTVSFHKYNGDFFPATGNFDENGVKGGKYFALNVPLEDGIGDEQYTSLFKS 261
Query: 299 IIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGY 358
II+ + +QP A+VLQCGADSL DRLG FNLS+ H +C+RF RSFN+P++V+GGGGY
Sbjct: 262 IIEPTINTFQPSAIVLQCGADSLGYDRLGVFNLSIHAHGECVRFTRSFNIPMLVVGGGGY 321
Query: 359 TIRNVARCWCYETAVAVGVEPDNKLPYNE-YYEYFGPDYTLHVE-PCNMENLNAHKDMEK 416
T+RNVAR WCYET++ V + ++LP YYE+F PDYTLH +EN N K +E
Sbjct: 322 TLRNVARAWCYETSICVNEQIPSELPRETLYYEFFAPDYTLHPRLTTKIENKNTPKALED 381
Query: 417 IRNTLLEQLSGLIHAPSVPFQTTP--ATTQVPEEPE 450
+R LEQL L APSV Q P T + EE E
Sbjct: 382 LRIRALEQLRYLGGAPSVQMQQIPPDLTGHLEEEDE 417
>sp|Q09440|HDA2_CAEEL Putative histone deacetylase 2 OS=Caenorhabditis elegans GN=hda-2
PE=3 SV=1
Length = 507
Score = 395 bits (1014), Expect = e-109, Method: Compositional matrix adjust.
Identities = 206/434 (47%), Positives = 271/434 (62%), Gaps = 12/434 (2%)
Query: 56 GPDGKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPS 115
G D KKR V+Y+Y +G ++YGQ HPMKP R+ + ++L+V Y + + M V +
Sbjct: 23 GADVKKRNVAYYYHKDVGHFHYGQLHPMKPQRLVVCNDLVVSYEMPKYMTVVESPKLDAA 82
Query: 116 DIRRFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGA 175
DI FHT++YV FL +V+P+ G L++FN+GEDCP+F GL+ +C AGGS+
Sbjct: 83 DISVFHTEDYVNFLQTVTPKL-GLTMPDDVLRQFNIGEDCPIFAGLWDYCTLYAGGSVEG 141
Query: 176 AVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHG 235
A +LN DI +NW GGLHHAKKSEASGFCYVNDIVLGILELLK H+RVLY+DID+HHG
Sbjct: 142 ARRLNHKMNDIVINWPGGLHHAKKSEASGFCYVNDIVLGILELLKYHKRVLYIDIDIHHG 201
Query: 236 DGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGL 295
DGV+EAF +DRVMTVSFH+FG +FPG+G I D G G GK++A+NVPL + DE + L
Sbjct: 202 DGVQEAFNNSDRVMTVSFHRFGQYFPGSGSIMDKGVGPGKYFAINVPLMAAIRDEPYLKL 261
Query: 296 FRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGG 355
F +I V E + P+A+VLQCG+DSL DRLG F LS HA +++++S PLMVLGG
Sbjct: 262 FESVISGVEENFNPEAIVLQCGSDSLCEDRLGQFALSFNAHARAVKYVKSLGKPLMVLGG 321
Query: 356 GGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYE-YFGPDYTLHVEPCNMENLNAHKDM 414
GGYT+RNVARCW ET V +G+ D+++P Y YF P M + N+ +
Sbjct: 322 GGYTLRNVARCWALETGVILGLRMDDEIPGTSLYSHYFTPRLLRPNLVPKMNDANSAAYL 381
Query: 415 EKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPEEPEEDMERRPKP----------RIWNG 464
I L L + APSV Q E E+ ER K ++
Sbjct: 382 ASIEKETLACLRMIRGAPSVQMQNIVGIRLDEIEQIEENERLQKSSKSSIEYEVGKVSEK 441
Query: 465 EDYESDHDEDDKPP 478
+ E +ED KPP
Sbjct: 442 MEEECFVEEDSKPP 455
>sp|P53096|HOS2_YEAST Probable histone deacetylase HOS2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=HOS2 PE=1 SV=1
Length = 452
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/413 (46%), Positives = 274/413 (66%), Gaps = 15/413 (3%)
Query: 63 RVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHT 122
RVSY + + Y+YG HPMKP R+ + +L+ YGLH+ M++ A ++ +FH+
Sbjct: 27 RVSYHFNSKVSHYHYGVKHPMKPFRLMLTDHLVSSYGLHKIMDLYETRSATRDELLQFHS 86
Query: 123 DEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRG 182
++YV FL+ VSPE++ L+ FN+G+DCP+F L+ + G S+ A KL
Sbjct: 87 EDYVNFLSKVSPENANKLPRGT-LENFNIGDDCPIFQNLYDYTTLYTGASLDATRKLINN 145
Query: 183 DADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAF 242
+DIA+NW+GGLHHAKK+ SGFCYVNDIVL IL LL+ H R+LY+DID+HHGDGV+EAF
Sbjct: 146 QSDIAINWSGGLHHAKKNSPSGFCYVNDIVLSILNLLRYHPRILYIDIDLHHGDGVQEAF 205
Query: 243 YTTDRVMTVSFHKF-GDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPIIQ 301
YTTDRV T+SFHK+ G+FFPGTG + ++G +GK +ALNVPL DG+DD+S+ LF+ I+
Sbjct: 206 YTTDRVFTLSFHKYNGEFFPGTGDLTEIGCDKGKHFALNVPLEDGIDDDSYINLFKSIVD 265
Query: 302 KVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIR 361
++ ++P +V QCGADSL DRLGCFNL++K H +C++F++SF +P++V+GGGGYT R
Sbjct: 266 PLIMTFKPTLIVQQCGADSLGHDRLGCFNLNIKAHGECVKFVKSFGLPMLVVGGGGYTPR 325
Query: 362 NVARCWCYETAVAVGVEPDNKLPYN-EYYEYFGPDYTLHVEPCNM-ENLNAHKDMEKIRN 419
NV+R W YET + V +P + + + FGPDY+L+ ++ EN N+ K +E IR
Sbjct: 326 NVSRLWTYETGILNDVLLPEDIPEDIPFRDSFGPDYSLYPMLDDLYENKNSKKLLEDIRI 385
Query: 420 TLLEQLSGLIHAPSV-------PFQTTPATTQ----VPEEPEEDMERRPKPRI 461
LE + L APSV P Q A T+ + +E E+ E R+
Sbjct: 386 RCLENIRYLQGAPSVRMDAECIPTQDISALTEEEDKIIQEMNEETEADSSNRL 438
>sp|B1H369|HDAC8_XENTR Histone deacetylase 8 OS=Xenopus tropicalis GN=hdac8 PE=2 SV=1
Length = 369
Score = 317 bits (811), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 150/346 (43%), Positives = 224/346 (64%), Gaps = 4/346 (1%)
Query: 85 PHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDPSFSR 144
P R M H+LI YGL + M V +P A ++ FHTD Y++ L VS E D +
Sbjct: 27 PRRASMVHSLIEAYGLLKEMRVVKPKVASMEEMAAFHTDSYLQHLHKVSEEGDNDDPETL 86
Query: 145 HLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASG 204
+ +G DCP+ +G++ + A G ++ AA +L G IA+NW GG HHAKK EASG
Sbjct: 87 ---EYGLGYDCPITEGIYDYAAAVGGATLTAAEQLMAGKTRIAINWPGGWHHAKKDEASG 143
Query: 205 FCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFG-DFFPGT 263
FCY+ND VLGIL+L + RVLYVD+D+HHGDGVE+AF T +VMTVS HKF FFPGT
Sbjct: 144 FCYLNDAVLGILKLREKFDRVLYVDMDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGT 203
Query: 264 GHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSG 323
G + D+G G+G++Y++NVPL DG+ DE + + ++++V + P+AVVLQ GAD+++G
Sbjct: 204 GDVSDIGLGKGRYYSVNVPLQDGIQDEKYYQICEGVLKEVFTTFNPEAVVLQLGADTIAG 263
Query: 324 DRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKL 383
D + FN++ +G CL+++ + +P ++LGGGGY + N ARCW Y TA+ VG +++
Sbjct: 264 DPMCSFNMTPQGIGKCLKYVLQWQLPTLILGGGGYHLPNTARCWTYLTALIVGRTLSSEI 323
Query: 384 PYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLI 429
P +E++ +GPDY L V P + N + +++I ++ L ++
Sbjct: 324 PDHEFFTEYGPDYVLEVTPSCRPDRNDSQKVQEILQSIKGHLKQVV 369
>sp|Q9BY41|HDAC8_HUMAN Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=1 SV=2
Length = 377
Score = 314 bits (804), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 159/389 (40%), Positives = 232/389 (59%), Gaps = 15/389 (3%)
Query: 44 MEEPTEGASLVSGPDGKKRRVSYFYEPTIGDYYYGQGHPMK--PHRIRMAHNLIVHYGLH 101
MEEP E A G+ Y Y P Y + P R M H+LI Y LH
Sbjct: 1 MEEPEEPAD-----SGQSLVPVYIYSPE----YVSMCDSLAKIPKRASMVHSLIEAYALH 51
Query: 102 RRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGL 161
++M + +P A ++ FHTD Y++ L VS E D S + +G DCP +G+
Sbjct: 52 KQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSI---EYGLGYDCPATEGI 108
Query: 162 FGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKV 221
F + A G +I AA L G +A+NW+GG HHAKK EASGFCY+ND VLGIL L +
Sbjct: 109 FDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRK 168
Query: 222 HRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFG-DFFPGTGHIKDVGAGQGKFYALN 280
R+LYVD+D+HHGDGVE+AF T +VMTVS HKF FFPGTG + DVG G+G++Y++N
Sbjct: 169 FERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVN 228
Query: 281 VPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCL 340
VP+ DG+ DE + + ++++V + + P AVVLQ GAD+++GD + FN++ G CL
Sbjct: 229 VPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCL 288
Query: 341 RFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHV 400
+++ + + ++LGGGGY + N ARCW Y T V +G +++P +E++ +GPDY L +
Sbjct: 289 KYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEI 348
Query: 401 EPCNMENLNAHKDMEKIRNTLLEQLSGLI 429
P + N +++I N + L ++
Sbjct: 349 TPSCRPDRNEPHRIQQILNYIKGNLKHVV 377
>sp|Q8VH37|HDAC8_MOUSE Histone deacetylase 8 OS=Mus musculus GN=Hdac8 PE=1 SV=2
Length = 377
Score = 311 bits (797), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 149/346 (43%), Positives = 220/346 (63%), Gaps = 4/346 (1%)
Query: 85 PHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDPSFSR 144
P R M H+LI Y LH++M + +P A ++ FHTD Y++ L VS E D S
Sbjct: 35 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSI 94
Query: 145 HLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASG 204
+ +G DCP +G+F + A GG+I AA L G +A+NW+GG HHAKK EASG
Sbjct: 95 ---EYGLGYDCPATEGIFDYAAAIGGGTITAAQCLIDGKCKVAINWSGGWHHAKKDEASG 151
Query: 205 FCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFG-DFFPGT 263
FCY+ND VLGIL L + R+LYVD+D+HHGDGVE+AF T +VMTVS HKF FFPGT
Sbjct: 152 FCYLNDAVLGILRLRRKFDRILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGT 211
Query: 264 GHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSG 323
G + DVG G+G++Y++NVP+ DG+ DE + + ++++V + + P AVVLQ GAD+++G
Sbjct: 212 GDMSDVGLGKGRYYSVNVPIQDGIQDEKYYHICESVLKEVYQAFNPKAVVLQLGADTIAG 271
Query: 324 DRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKL 383
D + FN++ G CL+++ + + ++LGGGGY + N ARCW Y T V +G +++
Sbjct: 272 DPMCSFNMTPVGIGKCLKYVLQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEI 331
Query: 384 PYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLI 429
P +E++ +GPDY L + P + N +++I N + L ++
Sbjct: 332 PDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVV 377
>sp|B1WC68|HDAC8_RAT Histone deacetylase 8 OS=Rattus norvegicus GN=Hdac8 PE=2 SV=1
Length = 377
Score = 311 bits (797), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 149/346 (43%), Positives = 220/346 (63%), Gaps = 4/346 (1%)
Query: 85 PHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDPSFSR 144
P R M H+LI Y LH++M + +P A ++ FHTD Y++ L VS E D S
Sbjct: 35 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSI 94
Query: 145 HLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASG 204
+ +G DCP +G+F + A GG+I AA L G +A+NW+GG HHAKK EASG
Sbjct: 95 ---EYGLGYDCPATEGIFDYAAAIGGGTITAAQCLIDGKCKVAINWSGGWHHAKKDEASG 151
Query: 205 FCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFG-DFFPGT 263
FCY+ND VLGIL L + R+LYVD+D+HHGDGVE+AF T +VMTVS HKF FFPGT
Sbjct: 152 FCYLNDAVLGILRLRRKFDRILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGT 211
Query: 264 GHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSG 323
G + DVG G+G++Y++NVP+ DG+ DE + + ++++V + + P AVVLQ GAD+++G
Sbjct: 212 GDMSDVGLGKGRYYSVNVPIQDGIQDEKYYHICESVLKEVYQAFNPKAVVLQLGADTIAG 271
Query: 324 DRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKL 383
D + FN++ G CL+++ + + ++LGGGGY + N ARCW Y T V +G +++
Sbjct: 272 DPMCSFNMTPVGIGKCLKYVLQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEI 331
Query: 384 PYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLI 429
P +E++ +GPDY L + P + N +++I N + L ++
Sbjct: 332 PDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVV 377
>sp|Q7SXM0|HDAC8_DANRE Histone deacetylase 8 OS=Danio rerio GN=hdac8 PE=2 SV=1
Length = 378
Score = 307 bits (786), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 159/372 (42%), Positives = 233/372 (62%), Gaps = 8/372 (2%)
Query: 60 KKRRVSYFYEPTIGDYYYGQGHPMK-PHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIR 118
+ R V Y Y P +Y K P+R M H+LI YGL + M V +P A ++
Sbjct: 13 RTRSVVYVYSP---EYIQTCDSLSKVPNRASMVHSLIEAYGLLKYMRVVKPHVASIEEMA 69
Query: 119 RFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVK 178
FHTD Y++ L +S + D S F +G DCPV +G+F + A G ++ AA
Sbjct: 70 VFHTDSYLQHLHKISQDGDNDDPQS---ADFGLGYDCPVVEGIFDYAAAVGGATLTAAQN 126
Query: 179 LNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGV 238
L G D+A+NWAGG HHAKK EASG CYVND VLGIL+L + + RVLYVD+D+HHGDGV
Sbjct: 127 LLDGKCDVAINWAGGWHHAKKDEASGSCYVNDAVLGILKLREKYDRVLYVDVDLHHGDGV 186
Query: 239 EEAFYTTDRVMTVSFHKFG-DFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFR 297
E+AF T +VMTVS HKF FFPGTG + D G G+G++YA+NVP DG+ D+ + F
Sbjct: 187 EDAFSFTSKVMTVSLHKFSPGFFPGTGDVTDTGLGKGRWYAVNVPFEDGVRDDRYCQTFT 246
Query: 298 PIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGG 357
++Q+V ++ P+AVV+Q GAD+++GD + FN++ G A CL ++ + +P ++LGGGG
Sbjct: 247 SVMQEVKALFNPEAVVMQLGADTMAGDPMCSFNMTPVGVAKCLTYILGWELPTLLLGGGG 306
Query: 358 YTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKI 417
Y + N ARCW Y T +G +++P +E++ +GPDY+L + P + N + +E++
Sbjct: 307 YNLANTARCWTYLTGTVLGQTLSSEIPDHEFFTEYGPDYSLEISPSCRPDRNESQHLERV 366
Query: 418 RNTLLEQLSGLI 429
+T+ L ++
Sbjct: 367 ISTIKGNLKNVV 378
>sp|Q0VCB2|HDAC8_BOVIN Histone deacetylase 8 OS=Bos taurus GN=HDAC8 PE=2 SV=1
Length = 377
Score = 303 bits (776), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 146/346 (42%), Positives = 217/346 (62%), Gaps = 4/346 (1%)
Query: 85 PHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDPSFSR 144
P R M H+LI Y LH++M + +P A ++ FHTD Y++ L VS + D S
Sbjct: 35 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMASFHTDAYLQHLQKVSEDGDDDHPDS- 93
Query: 145 HLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASG 204
+ +G DCP +G+F + A G +I AA L G +A+NW+GG HHAKK EASG
Sbjct: 94 --IEYGLGYDCPATEGIFDYAAAVGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASG 151
Query: 205 FCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFG-DFFPGT 263
FCY+ND VLGIL L + R+LYVD+D+HHGDGVE+AF T +VMTVS HKF FFPGT
Sbjct: 152 FCYLNDAVLGILRLRRKFDRILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGT 211
Query: 264 GHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSG 323
G + DVG G+G++Y++NVP+ D + DE + + ++++V + P AVVLQ GAD+++G
Sbjct: 212 GDVSDVGLGKGRYYSVNVPIQDCIQDERYYHICESVLKEVYIAFNPKAVVLQLGADTIAG 271
Query: 324 DRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKL 383
D + FN++ G CL+++ + + ++LGGGGY + N ARCW Y T V +G +++
Sbjct: 272 DPMCSFNMTPVGIGKCLKYILQWELATLILGGGGYNLANTARCWTYLTGVILGKTLSSEI 331
Query: 384 PYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLI 429
P +E++ +GPDY L + P + N +++I N + L ++
Sbjct: 332 PDHEFFTAYGPDYVLEITPSCRPDRNEPHRVQQILNYIKGNLKHVV 377
>sp|Q6GPA7|HDAC8_XENLA Histone deacetylase 8 OS=Xenopus laevis GN=hdac8 PE=2 SV=1
Length = 325
Score = 293 bits (751), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 139/325 (42%), Positives = 211/325 (64%), Gaps = 4/325 (1%)
Query: 106 VNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFC 165
V +P A ++ FHTD Y++ L VS E D + +G DCP+ +G++ +
Sbjct: 4 VVKPKVASMEEMAAFHTDAYLQHLHKVSEEGDND---DPETLEYGLGYDCPITEGIYDYA 60
Query: 166 QASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRV 225
A G ++ AA +L G IAVNW GG HHAKK EASGFCY+ND VLGIL+L + RV
Sbjct: 61 AAVGGATLTAAEQLIEGKTRIAVNWPGGWHHAKKDEASGFCYLNDAVLGILKLREKFDRV 120
Query: 226 LYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFG-DFFPGTGHIKDVGAGQGKFYALNVPLN 284
LYVD+D+HHGDGVE+AF T +VMTVS HKF FFPGTG + D+G G+G++Y++NVPL
Sbjct: 121 LYVDMDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDIGLGKGRYYSINVPLQ 180
Query: 285 DGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLR 344
DG+ D+ + + ++++V + P+AVVLQ GAD+++GD + FN++ +G CL+++
Sbjct: 181 DGIQDDKYYQICEGVLKEVFTTFNPEAVVLQLGADTIAGDPMCSFNMTPEGIGKCLKYVL 240
Query: 345 SFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCN 404
+ +P ++LGGGGY + N ARCW Y TA+ VG +++P +E++ +GPDY L + P
Sbjct: 241 QWQLPTLILGGGGYHLPNTARCWTYLTALIVGRTLSSEIPDHEFFTEYGPDYVLEITPSC 300
Query: 405 MENLNAHKDMEKIRNTLLEQLSGLI 429
+ N + +++I ++ L ++
Sbjct: 301 RPDRNDTQKVQEILQSIKGNLKRVV 325
>sp|P39067|ACUC_BACSU Acetoin utilization protein AcuC OS=Bacillus subtilis (strain 168)
GN=acuC PE=3 SV=1
Length = 387
Score = 169 bits (428), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 167/336 (49%), Gaps = 21/336 (6%)
Query: 62 RRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFH 121
R + Y P+ Y + Q HP R+ + ++L+ ++ P A ++ H
Sbjct: 2 RDSVFIYSPSYQTYMFHQEHPFNQQRVLLTYDLLKTINAFDDGDIVTPRLASEEELSLVH 61
Query: 122 TDEYVEFL----ASVSPESSGDPSFSRHLKRFNVG-EDCPVFDGLFGFCQASAGGSIGAA 176
TD+Y++ + A P G+ + +G ED PVF G+ GG++ AA
Sbjct: 62 TDDYIQAVKLAGAGKLPAEEGE--------SYGLGTEDTPVFAGMHEAASLLVGGTLTAA 113
Query: 177 VKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHR-RVLYVDIDVHHG 235
+ G A A N GGLHH + ASGFC ND + I + K + RVLY+D D HHG
Sbjct: 114 DWVMSGQALHAANLGGGLHHGFRGRASGFCIYNDSAVAIQYIQKKYSARVLYIDTDAHHG 173
Query: 236 DGVEEAFYTTDRVMTVSFHKFGDF-FPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRG 294
DGV+ FY V T+S H+ G + FPGTG I++ G+G+G Y+ N+PL+ +D+SF
Sbjct: 174 DGVQFTFYDNPDVCTLSIHETGRYLFPGTGQIQEKGSGKGYGYSFNIPLDAFTEDDSFLE 233
Query: 295 LFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSF-----NVP 349
+R +V ++PD ++ Q GAD+ D L + ++ + + R +
Sbjct: 234 AYRTAASEVAAYFEPDVIISQNGADAHYYDPLTHLSATINIYEEIPRLAHTLAHQYCGGK 293
Query: 350 LMVLGGGGYTI-RNVARCWCYETAVAVGVEPDNKLP 384
+ +GGGGY I R V R W G++P +++P
Sbjct: 294 WIAVGGGGYDIWRVVPRAWARIWLEMKGIDPGHEIP 329
>sp|Q12214|HOS1_YEAST Histone deacetylase HOS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HOS1 PE=1 SV=1
Length = 470
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 135/229 (58%), Gaps = 7/229 (3%)
Query: 147 KRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFC 206
K++N+ DCP+F L +CQ G ++ L+ + I +NW GG HHA K ASGFC
Sbjct: 162 KQYNLEGDCPIFSYLPMYCQVITGATLNLLDHLSPTERLIGINWDGGRHHAFKQRASGFC 221
Query: 207 YVNDIVLGILELLKVH-RRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFG-DFFPGTG 264
Y+ND+VL I L K ++ YVD D+HHGDGVE+AF + ++ T+S H + FFPGTG
Sbjct: 222 YINDVVLLIQRLRKAKLNKITYVDFDLHHGDGVEKAFQYSKQIQTISVHLYEPGFFPGTG 281
Query: 265 HIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGD 324
+ D + +N+PL G DD + I+ ++E ++P+A++++CG D L GD
Sbjct: 282 SLSDSRKDKN---VVNIPLKHGCDDNYLELIASKIVNPLIERHEPEALIIECGGDGLLGD 338
Query: 325 RLGCFNLSVKGHAD-CLRFLRSF-NVPLMVLGGGGYTIRNVARCWCYET 371
R + L+++G + + ++S+ + +LGGGGY ++R + Y T
Sbjct: 339 RFNEWQLTIRGLSRIIINIMKSYPRAHIFLLGGGGYNDLLMSRFYTYLT 387
>sp|Q56195|ACUC_STAXY Acetoin utilization protein AcuC OS=Staphylococcus xylosus GN=acuC
PE=3 SV=1
Length = 385
Score = 148 bits (374), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 158/327 (48%), Gaps = 11/327 (3%)
Query: 61 KRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRF 120
++ Y Y + Y + HP R+++ L++ G ++ + P A ++
Sbjct: 5 QQTTGYVYANELLQYRFSNKHPFNQMRLKLTTELLMELGQLKQHHIISPRIATDDELSLI 64
Query: 121 HTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLN 180
H +Y++ ++ S G S + K GED F + GG++ A ++
Sbjct: 65 HAYDYIQ---AIRHASHGILSENEAKKYGLDGEDTLQFRMMHKHSARIVGGALNLADQIM 121
Query: 181 RGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELL-KVHRRVLYVDIDVHHGDGVE 239
G + GGLHH+ A+GFC ND+ + I L+ K ++RVL +D D HHGDG +
Sbjct: 122 SGTLTNGCHLGGGLHHSLPGRANGFCIYNDVAITISYLMQKYNQRVLCIDTDAHHGDGTQ 181
Query: 240 EAFYTTDRVMTVSFHKFGDF-FPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRP 298
+FYT D+ + S H+ G F FPG+GH + GA +G Y +N+PL +D+SF +F+
Sbjct: 182 WSFYTNDQALIYSIHETGKFLFPGSGHYTERGAEKGFGYTVNIPLEPYTEDQSFLDVFKQ 241
Query: 299 IIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSF-----NVPLMVL 353
I+ V+ ++PD +V G D D L + ++ + ++S +++
Sbjct: 242 TIEPVVASFKPDIIVSVHGVDVHYLDPLTHMSCTLNTLYEIPYIVKSLADTYTQGKVIMF 301
Query: 354 GGGGYTIRNVA-RCWCYETAVAVGVEP 379
GGGGY I V R W + +G +P
Sbjct: 302 GGGGYNIWKVVPRAWSHVFLALIGEQP 328
>sp|Q6GFX3|ACUC_STAAR Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MRSA252) GN=acuC PE=3 SV=1
Length = 389
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 151/315 (47%), Gaps = 11/315 (3%)
Query: 63 RVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHT 122
+ +Y Y + Y + HP R+++ L+++ L ++ +P A ++ H
Sbjct: 7 KTAYVYSDKLLQYRFHDQHPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHK 66
Query: 123 DEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRG 182
+YVE ++ S G S +K E+ F + GG++ A + G
Sbjct: 67 YDYVE---AIKHASHGIISEDEAMKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMSG 123
Query: 183 DADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLK-VHRRVLYVDIDVHHGDGVEEA 241
A + GGLHHA+ ASGFC NDI + L K ++RVL +D D HHGDG + +
Sbjct: 124 KALNGCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYNQRVLIIDTDAHHGDGTQWS 183
Query: 242 FYTTDRVMTVSFHKFGDF-FPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPII 300
FY + V T S H+ G F FPG+GH + G G + +NVPL +D SF F+ +
Sbjct: 184 FYADNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDSSFLECFKLTV 243
Query: 301 QKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSF-----NVPLMVLGG 355
+ V++ ++PD ++ G D D L N ++ + F++ N +++ GG
Sbjct: 244 EPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADTYTNGKIIMFGG 303
Query: 356 GGYTI-RNVARCWCY 369
GGY I R V R W +
Sbjct: 304 GGYNIWRVVPRAWSH 318
>sp|Q8NW34|ACUC_STAAW Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MW2) GN=acuC PE=3 SV=1
Length = 389
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 149/315 (47%), Gaps = 11/315 (3%)
Query: 63 RVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHT 122
+ +Y Y + Y + HP R+++ L+++ L ++ +P A ++ H
Sbjct: 7 KTAYVYSDKLLQYRFHDQHPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHK 66
Query: 123 DEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRG 182
+YVE ++ S G S K E+ F + GG++ A + G
Sbjct: 67 YDYVE---AIKHASHGIISEDEAKKYGLNDEENSQFKHMHRHSATIVGGALTLADLIMSG 123
Query: 183 DADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLK-VHRRVLYVDIDVHHGDGVEEA 241
+ GGLHHA+ ASGFC NDI + L K ++RVL +D D HHGDG + +
Sbjct: 124 KVLNGCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYNQRVLIIDTDAHHGDGTQWS 183
Query: 242 FYTTDRVMTVSFHKFGDF-FPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPII 300
FY + V T S H+ G F FPG+GH + G G + +NVPL +D SF F+ +
Sbjct: 184 FYADNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTV 243
Query: 301 QKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSF-----NVPLMVLGG 355
+ V++ ++PD ++ G D D L N ++ + F++ N +++ GG
Sbjct: 244 EPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGG 303
Query: 356 GGYTI-RNVARCWCY 369
GGY I R V R W +
Sbjct: 304 GGYNIWRVVPRAWSH 318
>sp|Q6G8J2|ACUC_STAAS Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MSSA476) GN=acuC PE=3 SV=1
Length = 389
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 149/315 (47%), Gaps = 11/315 (3%)
Query: 63 RVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHT 122
+ +Y Y + Y + HP R+++ L+++ L ++ +P A ++ H
Sbjct: 7 KTAYVYSDKLLQYRFHDQHPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHK 66
Query: 123 DEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRG 182
+YVE ++ S G S K E+ F + GG++ A + G
Sbjct: 67 YDYVE---AIKHASHGIISEDEAKKYGLNDEENSQFKHMHRHSATIVGGALTLADLIMSG 123
Query: 183 DADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLK-VHRRVLYVDIDVHHGDGVEEA 241
+ GGLHHA+ ASGFC NDI + L K ++RVL +D D HHGDG + +
Sbjct: 124 KVLNGCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYNQRVLIIDTDAHHGDGTQWS 183
Query: 242 FYTTDRVMTVSFHKFGDF-FPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPII 300
FY + V T S H+ G F FPG+GH + G G + +NVPL +D SF F+ +
Sbjct: 184 FYADNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTV 243
Query: 301 QKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSF-----NVPLMVLGG 355
+ V++ ++PD ++ G D D L N ++ + F++ N +++ GG
Sbjct: 244 EPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGG 303
Query: 356 GGYTI-RNVARCWCY 369
GGY I R V R W +
Sbjct: 304 GGYNIWRVVPRAWSH 318
>sp|Q5HF39|ACUC_STAAC Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
COL) GN=acuC PE=3 SV=1
Length = 389
Score = 136 bits (342), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 149/315 (47%), Gaps = 11/315 (3%)
Query: 63 RVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHT 122
+ +Y Y + Y + HP R+++ L+++ L ++ +P A ++ H
Sbjct: 7 KTAYVYSDKLLQYRFHDQHPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHK 66
Query: 123 DEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRG 182
+YVE ++ S G S K E+ F + GG++ A + G
Sbjct: 67 YDYVE---AIKHASHGIISEDEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMSG 123
Query: 183 DADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLK-VHRRVLYVDIDVHHGDGVEEA 241
+ GGLHHA+ ASGFC NDI + L K ++RVL +D D HHGDG + +
Sbjct: 124 KVLNGCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYNQRVLIIDTDAHHGDGTQWS 183
Query: 242 FYTTDRVMTVSFHKFGDF-FPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPII 300
FY + V T S H+ G F FPG+GH + G G + +NVPL +D SF F+ +
Sbjct: 184 FYADNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTV 243
Query: 301 QKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSF-----NVPLMVLGG 355
+ V++ ++PD ++ G D D L N ++ + F++ N +++ GG
Sbjct: 244 EPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGG 303
Query: 356 GGYTI-RNVARCWCY 369
GGY I R V R W +
Sbjct: 304 GGYNIWRVVPRAWSH 318
>sp|P64376|ACUC_STAAN Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
N315) GN=acuC PE=1 SV=1
Length = 389
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 149/315 (47%), Gaps = 11/315 (3%)
Query: 63 RVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHT 122
+ +Y Y + Y + HP R+++ L+++ L ++ +P A ++ H
Sbjct: 7 KTAYVYSDKLLQYRFHDQHPFNQMRLKLTTELLLNANLLSPEQIVQPRIATGDELMLIHK 66
Query: 123 DEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRG 182
+YVE ++ S G S K E+ F + GG++ A + G
Sbjct: 67 YDYVE---AIKHASHGIISEDEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMSG 123
Query: 183 DADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLK-VHRRVLYVDIDVHHGDGVEEA 241
+ GGLHHA+ ASGFC NDI + + K ++RVL +D D HHGDG + +
Sbjct: 124 KVLNGCHLGGGLHHAQPGRASGFCIYNDIAITAQYIAKEYNQRVLIIDTDAHHGDGTQWS 183
Query: 242 FYTTDRVMTVSFHKFGDF-FPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPII 300
FY + V T S H+ G F FPG+GH + G G + +NVPL +D SF F+ +
Sbjct: 184 FYADNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTV 243
Query: 301 QKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSF-----NVPLMVLGG 355
+ V++ ++PD ++ G D D L N ++ + F++ N +++ GG
Sbjct: 244 EPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGG 303
Query: 356 GGYTI-RNVARCWCY 369
GGY I R V R W +
Sbjct: 304 GGYNIWRVVPRAWSH 318
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.140 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 211,655,655
Number of Sequences: 539616
Number of extensions: 10148284
Number of successful extensions: 25026
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 24689
Number of HSP's gapped (non-prelim): 123
length of query: 490
length of database: 191,569,459
effective HSP length: 122
effective length of query: 368
effective length of database: 125,736,307
effective search space: 46270960976
effective search space used: 46270960976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)