Query 041063
Match_columns 490
No_of_seqs 377 out of 1644
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 03:27:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1342 Histone deacetylase co 100.0 4E-132 9E-137 1000.5 35.3 399 57-457 2-403 (425)
2 PTZ00063 histone deacetylase; 100.0 9E-116 2E-120 917.3 41.6 389 60-450 2-394 (436)
3 PTZ00346 histone deacetylase; 100.0 4.7E-99 1E-103 787.0 41.4 377 58-437 16-406 (429)
4 COG0123 AcuC Deacetylases, inc 100.0 2.4E-83 5.1E-88 658.3 32.9 324 62-396 2-335 (340)
5 PF00850 Hist_deacetyl: Histon 100.0 3.9E-79 8.5E-84 622.3 24.2 299 69-375 1-311 (311)
6 KOG1343 Histone deacetylase co 100.0 1.9E-50 4E-55 447.5 21.9 323 79-430 463-796 (797)
7 KOG1344 Predicted histone deac 100.0 2.6E-41 5.7E-46 323.4 14.2 284 62-361 14-305 (324)
8 KOG1343 Histone deacetylase co 100.0 8.5E-37 1.9E-41 338.9 11.6 345 62-431 29-391 (797)
9 cd04502 SGNH_hydrolase_like_7 71.8 11 0.00024 34.4 6.3 68 278-353 25-95 (171)
10 cd04237 AAK_NAGS-ABP AAK_NAGS- 70.4 9.4 0.0002 38.8 6.0 64 291-362 1-64 (280)
11 TIGR01007 eps_fam capsular exo 69.2 60 0.0013 30.6 11.0 16 220-235 44-59 (204)
12 cd01835 SGNH_hydrolase_like_3 68.1 22 0.00048 33.0 7.6 74 279-353 41-117 (193)
13 KOG0121 Nuclear cap-binding pr 67.1 4.6 0.0001 37.0 2.6 42 198-239 73-121 (153)
14 TIGR03018 pepcterm_TyrKin exop 66.8 72 0.0016 30.4 11.0 24 294-317 134-157 (207)
15 TIGR01969 minD_arch cell divis 65.0 14 0.00031 35.7 5.8 19 218-236 25-43 (251)
16 cd01825 SGNH_hydrolase_peri1 S 64.3 22 0.00048 32.5 6.7 71 278-354 27-103 (189)
17 KOG2749 mRNA cleavage and poly 60.1 82 0.0018 33.8 10.5 115 213-356 122-248 (415)
18 cd01832 SGNH_hydrolase_like_1 58.7 37 0.0008 31.0 7.2 61 287-353 47-111 (185)
19 cd01822 Lysophospholipase_L1_l 56.8 43 0.00093 30.2 7.2 46 302-353 58-107 (177)
20 cd01836 FeeA_FeeB_like SGNH_hy 56.3 31 0.00067 31.8 6.3 60 286-353 50-112 (191)
21 PF02310 B12-binding: B12 bind 56.2 24 0.00052 30.2 5.1 48 300-358 43-90 (121)
22 PRK05279 N-acetylglutamate syn 55.9 31 0.00067 37.2 7.0 64 291-362 8-71 (441)
23 cd00840 MPP_Mre11_N Mre11 nucl 55.8 50 0.0011 31.1 7.7 59 289-355 23-84 (223)
24 TIGR01890 N-Ac-Glu-synth amino 55.6 19 0.0004 38.8 5.2 63 292-362 1-63 (429)
25 cd04501 SGNH_hydrolase_like_4 54.4 53 0.0011 30.1 7.4 68 278-353 34-102 (183)
26 COG3914 Spy Predicted O-linked 53.1 1.2E+02 0.0026 34.3 10.9 146 201-365 312-476 (620)
27 cd02068 radical_SAM_B12_BD B12 51.9 44 0.00096 29.3 6.2 50 298-359 29-78 (127)
28 cd01828 sialate_O-acetylestera 51.9 49 0.0011 29.9 6.7 44 306-353 46-93 (169)
29 TIGR02855 spore_yabG sporulati 51.4 35 0.00075 35.0 5.9 58 298-356 143-206 (283)
30 cd01443 Cdc25_Acr2p Cdc25 enzy 49.9 72 0.0016 27.2 7.1 66 278-359 42-109 (113)
31 cd01972 Nitrogenase_VnfE_like 47.4 1.3E+02 0.0029 32.2 10.2 72 294-375 75-148 (426)
32 cd01841 NnaC_like NnaC (CMP-Ne 47.3 66 0.0014 29.2 6.8 69 278-353 26-96 (174)
33 cd01829 SGNH_hydrolase_peri2 S 46.8 61 0.0013 30.0 6.6 53 302-354 53-115 (200)
34 cd01830 XynE_like SGNH_hydrola 45.4 48 0.001 31.3 5.8 49 304-352 70-124 (204)
35 cd03466 Nitrogenase_NifN_2 Nit 45.3 1.3E+02 0.0027 32.5 9.6 71 295-376 71-146 (429)
36 PLN02825 amino-acid N-acetyltr 44.7 44 0.00096 37.2 6.0 63 292-362 1-63 (515)
37 PF13472 Lipase_GDSL_2: GDSL-l 43.9 17 0.00036 32.1 2.2 72 279-355 34-109 (179)
38 cd01820 PAF_acetylesterase_lik 43.5 33 0.00071 32.7 4.3 48 304-353 85-134 (214)
39 PF05582 Peptidase_U57: YabG p 42.9 56 0.0012 33.7 5.9 58 298-356 144-207 (287)
40 cd01838 Isoamyl_acetate_hydrol 42.7 55 0.0012 29.9 5.6 45 308-353 63-113 (199)
41 PRK14476 nitrogenase molybdenu 42.1 1.1E+02 0.0024 33.4 8.5 70 295-375 79-154 (455)
42 PRK04531 acetylglutamate kinas 42.0 38 0.00082 36.5 4.9 54 301-362 24-81 (398)
43 CHL00202 argB acetylglutamate 41.6 75 0.0016 32.4 6.8 64 291-361 6-69 (284)
44 COG0420 SbcD DNA repair exonuc 41.5 92 0.002 32.8 7.7 66 289-365 22-90 (390)
45 TIGR02931 anfK_nitrog Fe-only 41.5 1.6E+02 0.0034 32.3 9.6 69 296-375 80-159 (461)
46 cd01833 XynB_like SGNH_hydrola 41.3 73 0.0016 28.3 6.0 43 302-346 34-76 (157)
47 cd01844 SGNH_hydrolase_like_6 40.9 61 0.0013 29.8 5.6 48 301-353 50-99 (177)
48 PF04321 RmlD_sub_bind: RmlD s 40.3 12 0.00026 37.8 0.8 54 300-353 43-99 (286)
49 TIGR00034 aroFGH phospho-2-deh 39.9 1.4E+02 0.0031 31.6 8.6 29 209-240 239-269 (344)
50 TIGR01278 DPOR_BchB light-inde 39.9 57 0.0012 36.1 6.0 58 295-362 72-130 (511)
51 PRK13236 nitrogenase reductase 39.5 31 0.00066 35.2 3.6 23 220-243 32-54 (296)
52 TIGR01285 nifN nitrogenase mol 38.6 2.7E+02 0.0059 30.1 10.9 70 295-375 78-153 (432)
53 KOG3147 6-phosphogluconolacton 38.3 1E+02 0.0022 31.2 6.9 83 237-324 70-158 (252)
54 COG0455 flhG Antiactivator of 37.4 77 0.0017 32.1 6.0 94 217-320 27-124 (262)
55 cd01971 Nitrogenase_VnfN_like 35.8 1.4E+02 0.0029 32.2 8.0 58 295-362 73-131 (427)
56 COG1618 Predicted nucleotide k 35.1 1.2E+02 0.0026 29.1 6.5 59 277-354 79-137 (179)
57 cd07388 MPP_Tt1561 Thermus the 34.1 1.4E+02 0.0031 29.4 7.3 52 295-355 19-70 (224)
58 TIGR03282 methan_mark_13 putat 33.9 1.9E+02 0.0041 30.8 8.3 54 295-359 62-117 (352)
59 PRK10528 multifunctional acyl- 33.8 1.4E+02 0.003 28.1 6.8 46 302-353 65-114 (191)
60 PRK09841 cryptic autophosphory 33.8 3.3E+02 0.007 31.6 11.1 18 220-237 558-575 (726)
61 TIGR00583 mre11 DNA repair pro 33.7 1.5E+02 0.0033 32.0 7.8 49 289-345 24-72 (405)
62 cd02651 nuc_hydro_IU_UC_XIUA n 33.7 54 0.0012 33.5 4.3 52 300-363 105-156 (302)
63 cd00229 SGNH_hydrolase SGNH_hy 33.2 1.2E+02 0.0025 26.1 5.9 56 301-356 58-115 (187)
64 CHL00076 chlB photochlorophyll 33.1 1.7E+02 0.0038 32.4 8.5 59 295-363 72-132 (513)
65 cd01981 Pchlide_reductase_B Pc 32.5 1.4E+02 0.0031 32.0 7.5 57 295-361 72-130 (430)
66 cd01973 Nitrogenase_VFe_beta_l 32.4 3.1E+02 0.0068 29.9 10.2 69 296-375 74-152 (454)
67 cd01967 Nitrogenase_MoFe_alpha 32.1 1.9E+02 0.0042 30.5 8.3 66 295-370 74-141 (406)
68 cd05781 DNA_polB_B3_exo DEDDy 31.5 2.4E+02 0.0053 26.8 8.2 88 224-350 4-91 (188)
69 PLN02512 acetylglutamate kinas 31.4 1.3E+02 0.0028 31.1 6.6 66 289-361 28-93 (309)
70 CHL00175 minD septum-site dete 30.0 55 0.0012 32.7 3.6 19 220-238 42-60 (281)
71 cd01821 Rhamnogalacturan_acety 29.7 1.5E+02 0.0032 27.6 6.3 45 308-353 65-113 (198)
72 cd06167 LabA_like LabA_like pr 29.6 1.9E+02 0.0042 25.6 6.8 42 304-360 95-136 (149)
73 cd01965 Nitrogenase_MoFe_beta_ 29.4 2.3E+02 0.005 30.4 8.4 69 295-374 68-142 (428)
74 cd01966 Nitrogenase_NifN_1 Nit 29.1 2.7E+02 0.0058 30.0 8.8 70 295-375 68-143 (417)
75 PRK10818 cell division inhibit 28.8 58 0.0013 32.2 3.5 18 220-237 29-46 (270)
76 cd03111 CpaE_like This protein 28.3 67 0.0015 27.4 3.4 15 222-236 29-43 (106)
77 PRK11148 cyclic 3',5'-adenosin 28.1 2E+02 0.0044 28.6 7.3 54 293-355 39-93 (275)
78 cd03110 Fer4_NifH_child This p 28.0 44 0.00095 30.8 2.3 15 223-237 25-39 (179)
79 PF02585 PIG-L: GlcNAc-PI de-N 27.6 1.1E+02 0.0025 26.5 4.8 27 294-320 86-112 (128)
80 PF10609 ParA: ParA/MinD ATPas 27.4 1.6E+02 0.0036 24.7 5.4 55 281-355 6-61 (81)
81 CHL00073 chlN photochlorophyll 27.0 2.1E+02 0.0045 31.6 7.5 56 295-359 84-140 (457)
82 cd02067 B12-binding B12 bindin 26.9 1.6E+02 0.0035 25.3 5.6 35 302-347 44-78 (119)
83 TIGR01319 glmL_fam conserved h 25.7 2E+02 0.0043 31.8 7.1 53 305-376 117-171 (463)
84 cd07402 MPP_GpdQ Enterobacter 25.7 2.3E+02 0.005 27.1 7.0 57 290-355 21-78 (240)
85 PRK12755 phospho-2-dehydro-3-d 25.5 2.6E+02 0.0056 29.8 7.7 30 208-240 245-276 (353)
86 COG4017 Uncharacterized protei 25.5 3.5E+02 0.0076 26.8 7.9 100 222-341 45-147 (254)
87 TIGR02370 pyl_corrinoid methyl 25.0 1.5E+02 0.0033 28.4 5.5 36 302-348 129-164 (197)
88 PF14639 YqgF: Holliday-juncti 24.5 1.7E+02 0.0038 27.1 5.6 27 289-315 44-70 (150)
89 TIGR02026 BchE magnesium-proto 24.3 1.4E+02 0.0031 32.8 5.9 44 302-357 57-100 (497)
90 PF09383 NIL: NIL domain; Int 24.0 19 0.00042 28.9 -0.7 51 298-348 17-71 (76)
91 TIGR01279 DPOR_bchN light-inde 23.8 3.3E+02 0.0072 29.1 8.4 56 295-360 71-128 (407)
92 cd01979 Pchlide_reductase_N Pc 23.6 3.1E+02 0.0067 29.2 8.1 70 295-375 74-145 (396)
93 PRK13232 nifH nitrogenase redu 23.5 77 0.0017 31.6 3.3 17 220-236 27-43 (273)
94 PF00148 Oxidored_nitro: Nitro 23.5 2.7E+02 0.0058 29.2 7.5 55 295-359 61-117 (398)
95 COG1091 RfbD dTDP-4-dehydrorha 23.5 1.1E+02 0.0024 31.5 4.5 65 300-364 42-118 (281)
96 PRK13234 nifH nitrogenase redu 23.4 72 0.0016 32.5 3.1 19 218-236 28-46 (295)
97 PF13277 YmdB: YmdB-like prote 23.2 3.5E+02 0.0076 27.6 7.8 119 293-421 12-135 (253)
98 PRK02910 light-independent pro 23.2 3.5E+02 0.0076 30.1 8.6 56 295-361 72-128 (519)
99 TIGR01968 minD_bact septum sit 23.1 89 0.0019 30.2 3.6 19 218-236 26-44 (261)
100 TIGR00619 sbcd exonuclease Sbc 23.0 3.4E+02 0.0073 27.0 7.7 62 291-363 23-88 (253)
101 TIGR01283 nifE nitrogenase mol 22.7 3.5E+02 0.0075 29.4 8.4 56 295-360 108-165 (456)
102 PRK13233 nifH nitrogenase redu 22.4 79 0.0017 31.4 3.1 16 221-236 30-45 (275)
103 TIGR01361 DAHP_synth_Bsub phos 22.0 8.2E+02 0.018 24.6 10.8 78 288-378 144-224 (260)
104 PF02701 zf-Dof: Dof domain, z 22.0 26 0.00056 28.0 -0.3 11 202-212 15-25 (63)
105 PF00581 Rhodanese: Rhodanese- 21.8 1.2E+02 0.0026 24.9 3.7 18 342-359 91-108 (113)
106 cd01839 SGNH_arylesterase_like 21.8 2.4E+02 0.0051 26.4 6.1 36 306-346 77-117 (208)
107 PF02310 B12-binding: B12 bind 21.8 3.3E+02 0.0072 23.0 6.6 99 212-360 18-117 (121)
108 cd02036 MinD Bacterial cell di 21.7 1.1E+02 0.0023 27.7 3.6 21 218-238 24-44 (179)
109 cd06558 crotonase-like Crotona 21.6 3.2E+02 0.007 25.2 7.0 68 289-356 24-102 (195)
110 cd01974 Nitrogenase_MoFe_beta 21.6 3.4E+02 0.0074 29.3 8.0 70 295-375 72-147 (435)
111 TIGR02482 PFKA_ATP 6-phosphofr 21.4 2.7E+02 0.0059 28.8 6.9 96 290-386 12-132 (301)
112 KOG0835 Cyclin L [General func 21.4 1.9E+02 0.0041 30.6 5.6 72 315-394 131-213 (367)
113 COG1654 BirA Biotin operon rep 21.3 65 0.0014 26.9 1.9 54 315-368 14-68 (79)
114 cd01827 sialate_O-acetylestera 21.1 2E+02 0.0044 26.2 5.4 41 306-346 65-105 (188)
115 TIGR01860 VNFD nitrogenase van 21.1 5.6E+02 0.012 28.0 9.6 55 296-360 114-172 (461)
116 cd00316 Oxidoreductase_nitroge 21.1 4.1E+02 0.0088 27.7 8.3 65 298-373 70-136 (399)
117 cd01494 AAT_I Aspartate aminot 20.9 1.5E+02 0.0033 25.7 4.4 39 216-256 115-158 (170)
118 cd02065 B12-binding_like B12 b 20.9 2.6E+02 0.0056 23.7 5.8 15 303-317 45-59 (125)
119 COG1135 AbcC ABC-type metal io 20.8 1.4E+02 0.0031 31.4 4.6 59 295-353 275-337 (339)
120 PRK10966 exonuclease subunit S 20.7 3.5E+02 0.0075 29.2 7.8 64 291-365 23-89 (407)
121 PF14606 Lipase_GDSL_3: GDSL-l 20.7 1.6E+02 0.0036 28.2 4.7 50 299-359 50-105 (178)
122 PF06925 MGDG_synth: Monogalac 20.3 1.1E+02 0.0023 28.3 3.3 24 291-314 72-95 (169)
123 PF01729 QRPTase_C: Quinolinat 20.2 60 0.0013 30.8 1.6 46 316-366 99-144 (169)
124 COG0683 LivK ABC-type branched 20.0 4.6E+02 0.01 27.2 8.4 31 214-244 138-170 (366)
No 1
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=100.00 E-value=4e-132 Score=1000.46 Aligned_cols=399 Identities=67% Similarity=1.221 Sum_probs=382.4
Q ss_pred CCCCCCeEEEEEcCCcCCCCCCCCCCCChhHHHHHHHHHHHcCCCCCceecCCCCCCHHHHHccCcHHHHHHHHhhCCCC
Q 041063 57 PDGKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPES 136 (490)
Q Consensus 57 ~~~~~~~v~~~y~~~~~~~~~~~~HPe~p~R~~~i~~ll~~~gL~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~ 136 (490)
++..+++|+|+|++++++|+||++|||+|+|++++++||..|||.++|++++|.+|+.+||++|||.+||+||++++|++
T Consensus 2 ~~~~k~~V~y~yd~~vg~~~Yg~~hpmkP~R~~mth~Lv~~YgL~k~M~i~~p~~a~~~dm~~FHt~eYi~fL~~V~p~n 81 (425)
T KOG1342|consen 2 YSLIKRRVSYFYDPDVGNFHYGQGHPMKPHRIRMTHSLVLNYGLYKKMEIYRPDKASAQDMTRFHTDEYINFLQSVTPEN 81 (425)
T ss_pred CCcCCceEEEEecCccccccccCCCCCCcceehhhhHHHHhcchhhceeeccCCCCCHHHHHhhchHHHHHHHhhCCccc
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCchhhhhcccccCCCCCCCcchHHHHHHHHhHHHHHHHHHHcCCCCeeeecCCCCCCccccCCCCcchhcHHHHHHH
Q 041063 137 SGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGIL 216 (490)
Q Consensus 137 ~~~~~~~~~~~~~~~~~D~p~~~~~~~~a~~aaGgsl~aa~~l~~g~~~~Ain~~gG~HHA~~~~a~GFC~~NdvaIAa~ 216 (490)
+.. ..+++.+||+++|||+|+++|++|++++||||.||++|++++++|||||+||+|||+|++||||||+|||||||+
T Consensus 82 ~~~--~~~~~~~fNvg~DCPvF~gL~~fC~~~~GgSl~aa~kLn~~~~dIaINW~GGlHHAKK~eASGFCYvNDIVL~IL 159 (425)
T KOG1342|consen 82 MET--FNKELKQFNVGEDCPVFDGLYDYCQLYTGGSLNAAQKLNRGECDIAINWAGGLHHAKKSEASGFCYVNDIVLGIL 159 (425)
T ss_pred ccc--cchHHHhcCCCCCCccccCHHHHHHHhcccchHHHHHhCCCCceEEEecCcccccccccccCcceeehHHHHHHH
Confidence 765 456789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEEcccCCCchhhhccccCCCeEEEeccCcC-CCCCCCCCCCccCCCCCcceeecccCCCCCChhHHHHH
Q 041063 217 ELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFG-DFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGL 295 (490)
Q Consensus 217 ~ll~~~~RVliVD~DvHHGdGtqe~Fy~d~~VltiSiH~~g-~ffPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~yl~~ 295 (490)
+|||.++||||||||||||||||+|||.++||||||||+|| +||||||.+.|+|.++|++|+|||||.+|++|++|..+
T Consensus 160 eLlK~h~RVLYIDIDvHHGDGVEeAFy~TDRVmTvSfHKyg~~fFPGTG~l~d~G~~kGkyyavNVPL~dGidD~sy~~i 239 (425)
T KOG1342|consen 160 ELLKYHKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGPGFFPGTGDLSDIGAGKGKYYAVNVPLKDGIDDESYESI 239 (425)
T ss_pred HHHHhCCceEEEEecccCCccHHHHHhccceeEEEEEEeccCCCCCCCCcceeccCCCCceEEEccchhccCCcHHHHHH
Confidence 99999999999999999999999999999999999999996 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCCCchhHHHHHHHHHHHh
Q 041063 296 FRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAV 375 (490)
Q Consensus 296 f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~var~w~~~t~~ll 375 (490)
|++||.++++.|+|++||+|||+|++.+|+||+||||++||++|+++++++++|+++|||||||++||||||||+|++++
T Consensus 240 f~pIi~~v~e~f~P~AiVLQCGaDSL~gDRlgcFnLsi~Gh~~Cv~fvksfn~pllvlGGGGYT~rNVARcWtYeT~v~~ 319 (425)
T KOG1342|consen 240 FKPIISKVMERFQPEAIVLQCGADSLAGDRLGCFNLSIKGHAECVKFVKSFNLPLLVLGGGGYTLRNVARCWTYETGVLL 319 (425)
T ss_pred HHHHHHHHHHHhCCceEEEEcCCccccCCccceeeecchhHHHHHHHHHHcCCcEEEecCCccchhhhHHHHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccccccCCCcccCcCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCC--CCCcccc
Q 041063 376 GVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVP--EEPEEDM 453 (490)
Q Consensus 376 g~~~~~~lP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~le~i~~~~~~~l~~l~~~~~v~~~~~p~~~~~~--~~~~~~~ 453 (490)
|++++++||+++||+||||||+|++.+++|+|+|+++||++|++.+.+||+++++|||||||.+|+..... .++|++.
T Consensus 320 ~~~~~~elP~n~y~~yF~PDy~l~~~~~~~~n~Nt~~~l~~i~~~~~enL~~l~~apSVqm~~~p~~~~d~~~~~~~~~~ 399 (425)
T KOG1342|consen 320 DQELPNELPYNDYFEYFGPDYKLHIDPSNMENFNTPHYLESIRNEILENLRMLQHAPSVQMQMIPNPDFDEDMVEDEKDP 399 (425)
T ss_pred CccccccCCCccchhhhCCCcccccCccchhcccCHHHHHHHHHHHHHHHHhccCCCcccccccCCCccchhhhhhhhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999732222 1344455
Q ss_pred cCCC
Q 041063 454 ERRP 457 (490)
Q Consensus 454 ~~~~ 457 (490)
+.|.
T Consensus 400 d~~~ 403 (425)
T KOG1342|consen 400 DLRS 403 (425)
T ss_pred cccc
Confidence 5554
No 2
>PTZ00063 histone deacetylase; Provisional
Probab=100.00 E-value=8.7e-116 Score=917.35 Aligned_cols=389 Identities=63% Similarity=1.149 Sum_probs=371.8
Q ss_pred CCCeEEEEEcCCcCCCCCCCCCCCChhHHHHHHHHHHHcCCCCCceecCCCCCCHHHHHccCcHHHHHHHHhhCCCCCCC
Q 041063 60 KKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGD 139 (490)
Q Consensus 60 ~~~~v~~~y~~~~~~~~~~~~HPe~p~R~~~i~~ll~~~gL~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~~ 139 (490)
++++|+|+||++++.|+++++|||+|+|+++++++|.++||.+++++++|++|+.++|++||+++||++|+++++.+..+
T Consensus 2 ~~~~v~~~yd~~~~~h~~g~~HP~~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~~ 81 (436)
T PTZ00063 2 MRKRVSYFYDPDIGSYYYGPGHPMKPQRIRMAHALILSYDLYKHMEIYRPHKSVEPELVLFHDEEYVDFLSSISPENYRD 81 (436)
T ss_pred CCceEEEEECccccCcCCcCcCCcChHHHHHHHHHHHhCCCcccCeEecCCCCCHHHHHHhCCHHHHHHHHHhChhhccc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999987764322
Q ss_pred CchhhhhcccccC--CCCCCCcchHHHHHHHHhHHHHHHHHHHcCCCCeeeecCCCCCCccccCCCCcchhcHHHHHHHH
Q 041063 140 PSFSRHLKRFNVG--EDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILE 217 (490)
Q Consensus 140 ~~~~~~~~~~~~~--~D~p~~~~~~~~a~~aaGgsl~aa~~l~~g~~~~Ain~~gG~HHA~~~~a~GFC~~NdvaIAa~~ 217 (490)
....+.+|+++ .|||+|+++|++|+++|||||.||+++++|++++||||+||+|||++++|+||||||||||||++
T Consensus 82 --~~~~~~~f~lg~~~D~pv~~gl~~~a~~aaGgsl~Aa~~l~~g~~~iAin~~GG~HHA~~~~A~GFC~~NdiaiAi~~ 159 (436)
T PTZ00063 82 --FTYQLKRFNVGEATDCPVFDGLFEFQQSCAGASIDGAYKLNNHQADICVNWSGGLHHAKRSEASGFCYINDIVLGILE 159 (436)
T ss_pred --chhhhhhcccCCCCCCCcccHHHHHHHHHHhHHHHHHHHHHcCCCCEEeeCCCCCCCCccCCCCceeeecHHHHHHHH
Confidence 11235678888 49999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcEEEEEcccCCCchhhhccccCCCeEEEeccCcCCCCCCCCCCCccCCCCCcceeecccCCCCCChhHHHHHHH
Q 041063 218 LLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFR 297 (490)
Q Consensus 218 ll~~~~RVliVD~DvHHGdGtqe~Fy~d~~VltiSiH~~g~ffPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~yl~~f~ 297 (490)
|++.++||||||||||||||||+|||++++|||||||++++||||||..+++|.+.|++|++||||++|++|++|+.+|+
T Consensus 160 L~~~~~RVliID~DvHHGdGtqe~F~~~~~VltvS~H~~~~ffPgtG~~~e~G~g~G~g~~vNvPL~~G~~D~~Y~~~f~ 239 (436)
T PTZ00063 160 LLKYHARVMYIDIDVHHGDGVEEAFYVTHRVMTVSFHKFGDFFPGTGDVTDIGVAQGKYYSVNVPLNDGIDDDSFVDLFK 239 (436)
T ss_pred HHHhCCeEEEEeCCCCCCcchHHHhccCCCeEEEEeccCCCcCCCCCCccccCCCCCCceEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCCCchhHHHHHHHHHHHhCC
Q 041063 298 PIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGV 377 (490)
Q Consensus 298 ~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~var~w~~~t~~llg~ 377 (490)
++|.|++++|+||+||+|||||+|.+||||+|+||.+||.+|+++++++++|+++||||||+++++||||+++|++++|.
T Consensus 240 ~ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g~~~~~~~~~~~~~pil~l~gGGY~~~~lar~w~~~t~~~~~~ 319 (436)
T PTZ00063 240 PVISKCVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKGHAACVEFVRSLNIPLLVLGGGGYTIRNVARCWAYETGVILNK 319 (436)
T ss_pred HHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEeCccCCchHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred --CCCCCCCCcccccccCCCcccCcCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCCc
Q 041063 378 --EPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPEEPE 450 (490)
Q Consensus 378 --~~~~~lP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~le~i~~~~~~~l~~l~~~~~v~~~~~p~~~~~~~~~~ 450 (490)
+++++||+|+||+||+|+|+|++.+++|+|.|+++||++|++.+++||+.+++||||||+.+|++....+.+|
T Consensus 320 ~~~~~~~iP~~~~~~~~~~~~~l~~~~~~~~n~n~~~~l~~~~~~~~~~l~~~~~ap~v~~~~~~~~~~~~~~~~ 394 (436)
T PTZ00063 320 HDEMSDQISLNDYYDYYAPDFQLHLQPSNIPNYNSPEHLEKIKVKILENLRYLEHAPGVQFAYVPPDFFDRDIDD 394 (436)
T ss_pred cccCCccCCCCcchhhcCCCeEeecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCeeccccCCcccccccccc
Confidence 6999999999999999999999999999999999999999999999999999999999999999987765444
No 3
>PTZ00346 histone deacetylase; Provisional
Probab=100.00 E-value=4.7e-99 Score=787.02 Aligned_cols=377 Identities=41% Similarity=0.719 Sum_probs=339.2
Q ss_pred CCCCCeEEEE----EcCCcCCCCCCCCCCCChhHHHHHHHHHHHcCCCCCceecCCCCCCHHHHHccCcHHHHHHHHhhC
Q 041063 58 DGKKRRVSYF----YEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVS 133 (490)
Q Consensus 58 ~~~~~~v~~~----y~~~~~~~~~~~~HPe~p~R~~~i~~ll~~~gL~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~ 133 (490)
..++++++|+ |.+++..|+|+++|||+|+|+++++++|+++|+..+++++.|++|+.++|++||+++||++|+..+
T Consensus 16 ~~~~~~~~~~~~~~y~~~~~~~~~~~~HPe~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~l~~~~ 95 (429)
T PTZ00346 16 TESRGRVALIDTSGYASDMNISAFVPQHAMKPYRVLAAMEIVRSLKIDAHCRTVVPPLVKVEELMAYHTDTYLANLGLHS 95 (429)
T ss_pred ccccceeEEEecCccccccccccCCCcCCCCHHHHHHHHHHHHhcCCcccCeeecCCCCCHHHHHHhCCHHHHHHHHHhc
Confidence 3456889999 777778899999999999999999999999999999999999999999999999999999998754
Q ss_pred CCCCCCCchhhhhcccccCCCCCCCcchHHHHHHHHhHHHHHHHHHHcCCCCeeeecCCCCCCccccCCCCcchhcHHHH
Q 041063 134 PESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVL 213 (490)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~D~p~~~~~~~~a~~aaGgsl~aa~~l~~g~~~~Ain~~gG~HHA~~~~a~GFC~~NdvaI 213 (490)
...... ......+.+++|||+++++|++|+++|||+|.||+++++|++++||||+||+|||++++|+||||||||||
T Consensus 96 ~~~~~~---~~~~~~~~~d~Dtpv~~~~~~~a~laaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~fNdvAI 172 (429)
T PTZ00346 96 CRSWLW---NAETSKVFFSGDCPPVEGLMEHSIATASGTLMGAVLLNSGQVDVAVHWGGGMHHSKCGECSGFCYVNDIVL 172 (429)
T ss_pred cccccc---ccccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEeCCCCcCcCCCCCCCcchHHhHHHH
Confidence 322111 01123355778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEcccCCCchhhhccccCCCeEEEeccCcC-CCCCCCCCCCccCCCCCcceeecccCCCCCChhHH
Q 041063 214 GILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFG-DFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESF 292 (490)
Q Consensus 214 Aa~~ll~~~~RVliVD~DvHHGdGtqe~Fy~d~~VltiSiH~~g-~ffPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~y 292 (490)
||++|++.++||||||||||||||||+|||+||+|||||||+++ .||||||..+++|.|.|+||++||||++|++|++|
T Consensus 173 Aa~~ll~~~~RVliID~DVHHGnGTqeiF~~dp~Vl~vSiHq~~~~fyPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~Y 252 (429)
T PTZ00346 173 GILELLKCHDRVLYVDIDMHHGDGVDEAFCTSDRVFTLSLHKFGESFFPGTGHPRDVGYGRGRYYSMNLAVWDGITDFYY 252 (429)
T ss_pred HHHHHHHcCCeEEEEeCCCCCCchHHHHHcCCCCeEEEEecCCCCCCCCCCCCccccCCCCCceeEEeeeCCCCcCHHHH
Confidence 99999999999999999999999999999999999999999995 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCCCchhHHHHHHHHH
Q 041063 293 RGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETA 372 (490)
Q Consensus 293 l~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~var~w~~~t~ 372 (490)
+.+|+++|.|++++|+||+||||||||+|.+||||+|+||.+||.+|+++++++++|++++|||||++.++||||+++|+
T Consensus 253 l~~f~~ii~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~LT~~g~~~~~~~l~~~~~plv~vleGGY~~~~lar~w~~~t~ 332 (429)
T PTZ00346 253 LGLFEHALHSIVRRYSPDAIVLQCGADSLAGDRLGLLNLSSFGHGQCVQAVRDLGIPMLALGGGGYTIRNVAKLWAYETS 332 (429)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCCCCCCCceeCHHHHHHHHHHHHhcCCCEEEEeCCcCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCC--CC--CcccccccCCCcccCcCCCCCCCCC-cHHH----HHHHHHHHHHHcCCCCCCCCcccc
Q 041063 373 VAVGVEPDNK--LP--YNEYYEYFGPDYTLHVEPCNMENLN-AHKD----MEKIRNTLLEQLSGLIHAPSVPFQ 437 (490)
Q Consensus 373 ~llg~~~~~~--lP--~~~~~~~~~p~~~l~~~~~~~~~~n-~~~~----le~i~~~~~~~l~~l~~~~~v~~~ 437 (490)
+++|.++|++ || +..|.+||+|+|+|++.++++.|.| +... +++|.++|.++++.++..|-+|-.
T Consensus 333 ~l~g~~i~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (429)
T PTZ00346 333 ILTGHPLPPNTVLPVAEMPLSGWLFQDSPLLIVAQDRSNHVLPGLHCQRAYQMMTEQIDRHVPHIQPHPRLQKA 406 (429)
T ss_pred HHcCCCCCCCCCCCCCCCchhhhhcCCCccccccccccccCCCcchhHHHHHHHHHHHHhhhhccCCcHHHHHH
Confidence 9999999876 78 4679999999999999877777666 3444 455555555666666655555443
No 4
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.4e-83 Score=658.34 Aligned_cols=324 Identities=33% Similarity=0.562 Sum_probs=300.0
Q ss_pred CeEEEEEcCCcCCCCCCCCCCCChhHHHHHHHHHHHcCCCCCceecCCCCCCHHHHHccCcHHHHHHHHhhCCCCCCCCc
Q 041063 62 RRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDPS 141 (490)
Q Consensus 62 ~~v~~~y~~~~~~~~~~~~HPe~p~R~~~i~~ll~~~gL~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~~~~ 141 (490)
+++.++|++.+..|.++..|||+|.|++++.++|++.++...+++++|++++.++|+++|+++||++|++.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~Hpe~p~R~~~~~~~l~~~~~~~~~~~~~p~~~~~~~l~~vH~~~yv~~l~~~~~~~----- 76 (340)
T COG0123 2 MKTALIYHPEFLEHEPPPGHPENPDRLRLILELLESSGLPDSLELVEPRPATLEELLLVHSPDYVEFLESLSEEE----- 76 (340)
T ss_pred CcceEeeCHHHhcCCCCCCCCCChHHHHHHHHHHHhcCccccccccCCCcCCHHHHHhhCCHHHHHHHHHhcccc-----
Confidence 468899999999999999999999999999999999998889999999999999999999999999999987652
Q ss_pred hhhhhcccccCCCCCCCcchHHHHHHHHhHHHHHHHHHHcCCCCeeeecCCCCCCccccCCCCcchhcHHHHHHHHHHhc
Q 041063 142 FSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKV 221 (490)
Q Consensus 142 ~~~~~~~~~~~~D~p~~~~~~~~a~~aaGgsl~aa~~l~~g~~~~Ain~~gG~HHA~~~~a~GFC~~NdvaIAa~~ll~~ 221 (490)
..+.++.|||+++++|++|++++||+++|++.+++|+..+++++.||+|||++++++|||+|||+||||++|+++
T Consensus 77 -----~~~~~d~d~~~s~~~~~~a~~a~G~al~A~~~v~~g~~~~~~~~rppgHHA~~~~a~GFC~fNn~Aiaa~~l~~~ 151 (340)
T COG0123 77 -----GYGNLDGDTPVSPGTYEAARLAAGGALTAVDAVLEGEDNAFALVRPPGHHAGRDRASGFCLFNNVAIAAKYLLKK 151 (340)
T ss_pred -----ccccccCCCccChHHHHHHHHHhhHHHHHHHHHHcCccceEEECCCCcccccCCCCceeeeecHHHHHHHHHHHc
Confidence 146789999999999999999999999999999999877788888888999999999999999999999999996
Q ss_pred -CCcEEEEEcccCCCchhhhccccCCCeEEEeccCc-CCCCCCCCCCCccCCCCCcceeecccCCCCCChhHHHHHHHHH
Q 041063 222 -HRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKF-GDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPI 299 (490)
Q Consensus 222 -~~RVliVD~DvHHGdGtqe~Fy~d~~VltiSiH~~-g~ffPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~yl~~f~~i 299 (490)
.+||+|||||||||||||+|||++++|+|+|||++ ..||||||..+++|.++ +||++|||||+|++|++|+.+|+.+
T Consensus 152 ~~~RVaIiD~DvHHGnGTqeify~~~~V~~~S~H~~~~~~yPgtg~~~e~g~g~-~g~~vNiPLp~g~~d~~y~~a~~~~ 230 (340)
T COG0123 152 GVKRVAIIDFDVHHGNGTQEIFYDDDDVLTVSLHQDGRPFYPGTGGADEIGEGK-EGNNVNIPLPPGTGDDSYLEALEEI 230 (340)
T ss_pred CCCcEEEEEecCCCChhhHHHHccCCCeEEEeccCCCCCCCCcCCCccccccCc-ccceEeeecCCCCCcHHHHHHHHHH
Confidence 79999999999999999999999999999999999 48999999999999998 9999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhc----CCCEEEEcCCCCCCchhHHHHHHHHHHHh
Q 041063 300 IQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSF----NVPLMVLGGGGYTIRNVARCWCYETAVAV 375 (490)
Q Consensus 300 i~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~----~~pvl~lleGGY~~~~var~w~~~t~~ll 375 (490)
+.|++++|+||+||||||||+|.+||||+|+||.++|.+|+++++++ ++|+++||||||++.+++++|++++..+.
T Consensus 231 v~~~~~~f~PdlvivsaG~D~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~vleGGY~~~~l~~~~~~~~~~l~ 310 (340)
T COG0123 231 VLPLLEEFKPDLVIVSAGFDAHRGDPLGRLNLTEEGYAKIGRAVRKLAEGYGGPVVAVLEGGYNLDALARSLVAFLAGLA 310 (340)
T ss_pred HHHHHHhcCCCEEEEecCcccCCCCccceeecCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCChHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999875 56999999999999999999999999999
Q ss_pred CCC---CCCCCCCc-ccccccCCCc
Q 041063 376 GVE---PDNKLPYN-EYYEYFGPDY 396 (490)
Q Consensus 376 g~~---~~~~lP~~-~~~~~~~p~~ 396 (490)
|.. .+..+|.. +++..+.+++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (340)
T COG0123 311 GLVEEELEEPLPEDLELRRAFRADY 335 (340)
T ss_pred CCCccccccccccchhhhhhhccch
Confidence 953 34445543 4555555554
No 5
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=100.00 E-value=3.9e-79 Score=622.29 Aligned_cols=299 Identities=35% Similarity=0.646 Sum_probs=237.2
Q ss_pred cCCcCCCCCCCCCCCChhHHHHHHHHHHH-cCCCCCceecCCCCCCHHHHHccCcHHHHHHHHhhCCCCCCCCchh-hhh
Q 041063 69 EPTIGDYYYGQGHPMKPHRIRMAHNLIVH-YGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDPSFS-RHL 146 (490)
Q Consensus 69 ~~~~~~~~~~~~HPe~p~R~~~i~~ll~~-~gL~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~~~~~~-~~~ 146 (490)
||.|. |.+++.|||+|+|++.+.+.|.+ +++++. ++|+.++|++|||++||++|++.+.......... ...
T Consensus 1 ~~~~~-~~~~~~Hpe~p~R~~~i~~~L~~~~~l~~~------~~a~~~~L~~vH~~~Yv~~l~~~~~~~~~~~~~~~~~~ 73 (311)
T PF00850_consen 1 HPQYQ-HQLGDGHPESPERLESIVEALKESYGLLPR------RPATDEELLRVHDPEYVDFLESASKEAKEEEEAGSPEF 73 (311)
T ss_dssp ----T-T-CCTTSSSCTHHHHHHHHHHHHTTTGGGG----------HHHHTTTS-HHHHHHHHHHHHHTSGCTHHHHHHH
T ss_pred CCccc-CCCCCCcCCCHHHHHHHHHHHHHhcCCCCC------CCCCHHHHHHcCCHHHHHHHHHhccccccccccccccc
Confidence 57777 88999999999999977776666 477644 8999999999999999999998764432210000 000
Q ss_pred cccccCCCCCCCcchHHHHHHHHhHHHHHHHHHHcCC--CCeeeecCCCCCCccccCCCCcchhcHHHHHHHHHHhc--C
Q 041063 147 KRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGD--ADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKV--H 222 (490)
Q Consensus 147 ~~~~~~~D~p~~~~~~~~a~~aaGgsl~aa~~l~~g~--~~~Ain~~gG~HHA~~~~a~GFC~~NdvaIAa~~ll~~--~ 222 (490)
....-+.|||++++++++|++++||++.|++.+++|+ ..+|+++||| |||++++++||||||||||||++|++. .
T Consensus 74 ~~~~~~~dt~~~~~~~~~a~~a~g~~l~a~~~v~~g~~~~~~a~~rppg-HHA~~~~a~GFC~~Nnvaiaa~~l~~~~~~ 152 (311)
T PF00850_consen 74 PNILDDGDTPISPGSWEAARLAAGGTLEAADAVLSGEIKNAFALVRPPG-HHAERDRAMGFCYFNNVAIAAKYLRKKYGL 152 (311)
T ss_dssp CCBTSSSSSEBCTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEEEESS---TT-BTTBBBTTBSS-HHHHHHHHHHHTTTT
T ss_pred ccccCCCCcceehHHHHHHHHHHHHHHHHHHhhhcccccceeeecCccc-cccCcCcCcceeeeccHHHHHHHHhhcccc
Confidence 0000168999999999999999999999999999995 4567776665 999999999999999999999999985 3
Q ss_pred CcEEEEEcccCCCchhhhccccCCCeEEEeccCc-CCCCC-CCCCCCccCCCCCcceeecccCCCCCChhHHHHHHHHHH
Q 041063 223 RRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKF-GDFFP-GTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPII 300 (490)
Q Consensus 223 ~RVliVD~DvHHGdGtqe~Fy~d~~VltiSiH~~-g~ffP-gtG~~~e~G~g~G~g~~vNVPL~~G~~D~~yl~~f~~ii 300 (490)
+||+|||||||||||||++||+||+|||+|||++ +.||| +||..+++|.++|+++++||||++|++|++|+.+|+++|
T Consensus 153 ~rV~iiD~DvHhGnGtq~if~~d~~V~~~SiH~~~~~~yP~~tG~~~e~G~~~g~g~~~NipL~~g~~d~~y~~~~~~~l 232 (311)
T PF00850_consen 153 KRVAIIDFDVHHGNGTQEIFYDDPRVLYISIHQYPGNFYPFGTGFPDEIGEGKGKGYNLNIPLPPGTGDDEYLEAFEEIL 232 (311)
T ss_dssp SSEEEEE-SSS--HHHHHHTTT-SSEEEEEEEE-CTTSTTTSS--TT--ESGGGTTSEEEEEE-TTEBHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCcccchhheeCCCCEEecCccccccccCCCcCCCccccCCCcccceeEecccccccchHHHHHHHhhcc
Confidence 8999999999999999999999999999999998 67999 999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCC----CEEEEcCCCCCCchhHHHHHHHHHHHh
Q 041063 301 QKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNV----PLMVLGGGGYTIRNVARCWCYETAVAV 375 (490)
Q Consensus 301 ~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~----pvl~lleGGY~~~~var~w~~~t~~ll 375 (490)
.|++++|+||+||||||||++.+||+|.|+||++||.+++++|+++.. |+|++|||||++.++++||+.++++|.
T Consensus 233 ~~~~~~f~P~~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGGY~~~~~~~~~~~~~~~L~ 311 (311)
T PF00850_consen 233 LPALEEFRPDLIVVSAGFDAHAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSVLEGGYNPESLARSWAAVIAALA 311 (311)
T ss_dssp HHHHHHHT-SEEEEEE-STTBTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-SSHHHHHHHHHHHHHHH-
T ss_pred ccchhcccCcEEEEccCcccchhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEECCCCChhHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999998744 999999999999999999999998873
No 6
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=100.00 E-value=1.9e-50 Score=447.45 Aligned_cols=323 Identities=26% Similarity=0.373 Sum_probs=261.2
Q ss_pred CCCCCChhHHHHHHHHHHHcCCCCCceecCCCCCCHHHHHccCcHHHHHHHHhhCCCCCCCCchhhhh-cccccCCCCCC
Q 041063 79 QGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDPSFSRHL-KRFNVGEDCPV 157 (490)
Q Consensus 79 ~~HPe~p~R~~~i~~ll~~~gL~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~~~~~~~~~-~~~~~~~D~p~ 157 (490)
.+||..|.|. +..+. +||+.+|+.+ ||.++|+.||+..|+..+.........+ ..... ..++ -..+
T Consensus 463 ~~~~~~p~r~--~t~~~--~gl~~~c~r~----at~~el~~vHs~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~i~~ 529 (797)
T KOG1343|consen 463 SRSPESPARF--TTGLH--TGLLGKCERI----ATLEELQLVHSEAHVLLYGSRKLLGDLS--LKFESRLPCG---GIGV 529 (797)
T ss_pred cCCcccchhh--hcccc--cccccccccc----cchhhhhhcccchhhcccchhhhccccc--chhhhhcccc---ceee
Confidence 4789999992 22222 8999999887 9999999999999999865221111000 00000 0000 0112
Q ss_pred CcchHHHHHHHHhHHHHHHHHH--HcCCC--CeeeecCCCCCCccccCCCCcchhcHHHHHHHHHHhcC--CcEEEEEcc
Q 041063 158 FDGLFGFCQASAGGSIGAAVKL--NRGDA--DIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVH--RRVLYVDID 231 (490)
Q Consensus 158 ~~~~~~~a~~aaGgsl~aa~~l--~~g~~--~~Ain~~gG~HHA~~~~a~GFC~~NdvaIAa~~ll~~~--~RVliVD~D 231 (490)
.+.+|.....++|+...++..+ +.+.. .+|+.++|| |||....++|||+|||+|||+++|.... .||+|||||
T Consensus 530 ~~dt~~~~~~ssga~~~av~~v~~~~~~~~~g~avvRppG-Hha~~~~a~gfc~fn~vaiaak~l~~~~~~~rilivdwD 608 (797)
T KOG1343|consen 530 DSDTWWNELHSSGAARLAVGCVIELAFKVASGFAVVRPPG-HHAEASTAMGFCFFNSVAIAAKLLQQRSKASRILIVDWD 608 (797)
T ss_pred cccHHHHHHHHHHHHHHhcchhhhhhhhhhcceeEecCCc-cccccCCcceeeeecchhhhhHHhhhhhhhcceEEEeec
Confidence 2445556666666666665554 22222 489999998 9999999999999999999999998764 899999999
Q ss_pred cCCCchhhhccccCCCeEEEeccCc--CCCCCCCCCCCccCCCCCcceeecccCCCCC-ChhHHHHHHHHHHHHHHHHhC
Q 041063 232 VHHGDGVEEAFYTTDRVMTVSFHKF--GDFFPGTGHIKDVGAGQGKFYALNVPLNDGL-DDESFRGLFRPIIQKVMEVYQ 308 (490)
Q Consensus 232 vHHGdGtqe~Fy~d~~VltiSiH~~--g~ffPgtG~~~e~G~g~G~g~~vNVPL~~G~-~D~~yl~~f~~ii~pv~~~F~ 308 (490)
||||||||.+||.+++|||+|+|++ |+|||++|..+++|.+.|+++++|||++.+. +|.+|+.+|+.+++|++++|.
T Consensus 609 vhhgngtq~~f~~~~~vlyislhr~~~G~~fp~~g~~~e~g~~~g~g~~vNv~~~~~~~~D~ey~~a~~~vv~Pia~~F~ 688 (797)
T KOG1343|consen 609 VHHGNGTQQAFYSDPSVLYISLHRHDDGNFFPGSGAPDEVGKGEGVGFNVNVAWTGGLDPDAEYLAAFRTVVMPIAYEFN 688 (797)
T ss_pred ccCCcceeeeeccCccccccccchhccCCcCCCCCCchhcccccccceeecccccCCCCCCHHHHHHHHHhhHHHHHHhC
Confidence 9999999999999999999999999 8999999999999999999999999998754 469999999999999999999
Q ss_pred CCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhc-CCCEEEEcCCCCCCchhHHHHHHHHHHHhCCCCCCCCCCcc
Q 041063 309 PDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSF-NVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNE 387 (490)
Q Consensus 309 PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~-~~pvl~lleGGY~~~~var~w~~~t~~llg~~~~~~lP~~~ 387 (490)
||+|++|+|||+..+||||+..+|.++|+.+++.|+.+ ++++++++||||++..++.+...++.+|+|.+.|. ++..
T Consensus 689 pd~VlvSagfDaa~~dplg~~~vt~~~~~~lt~~l~~lagGRvv~~LEggy~lt~is~s~~~~~~~llg~~~p~-~~~~- 766 (797)
T KOG1343|consen 689 PDLVLVSAGFDAAEGDPLGGYKVTAECFGYLTQQLMGLAGGRVVLALEGGYDLTAISDSAEACVRALLGDSLPP-LSEA- 766 (797)
T ss_pred CCeEEEeccccccccCccccccccHhHHHHHHHHHHHhcCCcEEEEecCCcchhhhhHHHHHHHHhccCCCCCC-cccc-
Confidence 99999999999999999999999999999999999987 79999999999999999999999999999998776 3321
Q ss_pred cccccCCCcccCcCCCCCCCCCcHHHHHHHHHHHHHHcCCCCC
Q 041063 388 YYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIH 430 (490)
Q Consensus 388 ~~~~~~p~~~l~~~~~~~~~~n~~~~le~i~~~~~~~l~~l~~ 430 (490)
| -...++.|-..+|+++++.....|+.++.
T Consensus 767 --------~-----~~~~~~~~a~~~l~~~~~~~~~~w~~~~~ 796 (797)
T KOG1343|consen 767 --------Y-----LPQKPNSNAVATLEKVIEVQSKYWSCLQG 796 (797)
T ss_pred --------c-----cCCCcchHHHHHHHHHHHhhhcccccccC
Confidence 1 01245567888888888888888876654
No 7
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=100.00 E-value=2.6e-41 Score=323.36 Aligned_cols=284 Identities=25% Similarity=0.419 Sum_probs=235.6
Q ss_pred CeEEEEEcCCcC--CCCCCCCCCCChhHHHHHHHHHHHcCCCCCceecCCCCCCHHHHHccCcHHHHHHHHhhCCCCCCC
Q 041063 62 RRVSYFYEPTIG--DYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGD 139 (490)
Q Consensus 62 ~~v~~~y~~~~~--~~~~~~~HPe~p~R~~~i~~ll~~~gL~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~~ 139 (490)
.|+.++|++.|. .......||++..+...++++|.+.+++..-.+++|..+|.++|++||+.+|++.|+.......
T Consensus 14 ~k~pIvyS~~Y~i~FmGlEkLHPFDa~Kwg~v~kfL~~~~~l~d~~lvEp~e~t~e~L~rvHtr~YLkslr~s~~vA~-- 91 (324)
T KOG1344|consen 14 GKLPIVYSRNYAIRFMGLEKLHPFDAAKWGHVHKFLCAMNLLTDETLVEPNEATKEDLLRVHTRKYLKSLRWSIKVAQ-- 91 (324)
T ss_pred ccccEEecCccceeecchhhcCcCcccchhHHHHHHHHhccccccccccCcccCHHHHHhHhhHHHHHHhhccceeeE--
Confidence 578999999886 2345678999999999999999999999888899999999999999999999999987432221
Q ss_pred CchhhhhcccccCCCCCCCcchHHHHHHHHhHHHHHHHHHHcCCCCeeeecCCCCCCccccCCCCcchhcHHHHHHHHHH
Q 041063 140 PSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELL 219 (490)
Q Consensus 140 ~~~~~~~~~~~~~~D~p~~~~~~~~a~~aaGgsl~aa~~l~~g~~~~Ain~~gG~HHA~~~~a~GFC~~NdvaIAa~~ll 219 (490)
..+......-+.|.+-..+....++.|||||.|+....+ .++|||..||+|||..+++.|||.+.||.+||..|.
T Consensus 92 ---I~EiP~v~flPn~~iqrk~LrPlR~QagGtilA~kLAle--~GWAINvGGGFHHcss~rGGGFC~yADItl~I~~lF 166 (324)
T KOG1344|consen 92 ---ITEIPFVGFLPNCIIQRKLLRPLRLQAGGTILAAKLALE--RGWAINVGGGFHHCSSSRGGGFCAYADITLAIFFLF 166 (324)
T ss_pred ---EEeccccccCchhhhhhhhccceeeccCceeehhhhhhh--cCeEEeecCccceeccCCCCceeehhhHHHHHHHHH
Confidence 011112223355666666777788999999999987774 469999999999999999999999999999998887
Q ss_pred hc--CCcEEEEEcccCCCchhhhccccCCCeEEEeccCcCCCCCCCCCCCccCCCCCcceeecccCCCCCChhHHHHHHH
Q 041063 220 KV--HRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFR 297 (490)
Q Consensus 220 ~~--~~RVliVD~DvHHGdGtqe~Fy~d~~VltiSiH~~g~ffPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~yl~~f~ 297 (490)
.+ ..|++|||+|+|+|||-|.-|.++ .|..+.+.. .-.||+.-...+ .-..-|.|..|++|++|+.-++
T Consensus 167 er~~isr~mivDLDAHQGNghErdf~~~-~vyi~d~yn-r~iyp~D~~Ak~-------~Ir~kVEl~~gTeddeYLrkl~ 237 (324)
T KOG1344|consen 167 ERKAISRAMIVDLDAHQGNGHERDFEDD-AVYIFDMYN-RFIYPRDHVAKE-------SIRCKVELRNGTEDDEYLRKLK 237 (324)
T ss_pred hhhhhhheEEEecccccCCccccccccc-eeehhhhhh-hhccchhHHHHH-------HhhheeeeecCCCchHHHHHHH
Confidence 65 489999999999999999999887 666555422 236886533221 1234577889999999999999
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHH----HHHHHHhcCCCEEEEcCCCCCCc
Q 041063 298 PIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHAD----CLRFLRSFNVPLMVLGGGGYTIR 361 (490)
Q Consensus 298 ~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~----~~~~l~~~~~pvl~lleGGY~~~ 361 (490)
..+...+.+|+||+||+.||.|.+.|||||.+.+|++|.-+ ++++.+..++|++++..|||-..
T Consensus 238 r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGGY~K~ 305 (324)
T KOG1344|consen 238 RCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGGYLKA 305 (324)
T ss_pred HHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCceehh
Confidence 99999999999999999999999999999999999999865 66777888999999999999853
No 8
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=100.00 E-value=8.5e-37 Score=338.87 Aligned_cols=345 Identities=21% Similarity=0.271 Sum_probs=277.9
Q ss_pred CeEEEEEcCCcCCCCC--CCCCC-CChhHHHHHHHHHHHcCCCCCceecCC-CCCCHHHHHccCcHHHHHHHHhhCCCCC
Q 041063 62 RRVSYFYEPTIGDYYY--GQGHP-MKPHRIRMAHNLIVHYGLHRRMEVNRP-FPAGPSDIRRFHTDEYVEFLASVSPESS 137 (490)
Q Consensus 62 ~~v~~~y~~~~~~~~~--~~~HP-e~p~R~~~i~~ll~~~gL~~~~~~~~p-~~At~eeL~~vHs~~YI~~L~~~~~~~~ 137 (490)
.++.++|++....|.. ...|+ +.++|++.+...+...++...+.+..+ +.|+.++++.+|+++|++++.... ...
T Consensus 29 ~~~~l~~~~~~~~h~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~ke~~~~~~~t~-~~~ 107 (797)
T KOG1343|consen 29 IQKQLLFAEFQKQHENQQELLEKEEKLERLRQIEEELERHRLEQPLLILRNKREAKESAVASVHVKEKLQEFLLSK-KMT 107 (797)
T ss_pred hhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHHhhccCCccccccccchhhcccchhcccccHHHHHHHHhhh-hhc
Confidence 5688899998887742 33344 888999999999999999888887777 889999999999999999987543 111
Q ss_pred CCCchhhhhccc-ccCCCCCCCcchHHHHHHHHhHHHHHHHHHHcCCC--CeeeecCCCCCCccccCCCCcchhcHHHHH
Q 041063 138 GDPSFSRHLKRF-NVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDA--DIAVNWAGGLHHAKKSEASGFCYVNDIVLG 214 (490)
Q Consensus 138 ~~~~~~~~~~~~-~~~~D~p~~~~~~~~a~~aaGgsl~aa~~l~~g~~--~~Ain~~gG~HHA~~~~a~GFC~~NdvaIA 214 (490)
.+ ..+... .-.+.+++.+..+..+..++|+.+...+.++.|+. ..|+.+++| |||.++...|||+|||||++
T Consensus 108 ~e----~~l~~~~~~~~~~~~~~~s~~~a~~a~~~~~~~~~~~~~~~~~n~~a~v~p~~-hhsep~~~~~~cl~n~Va~~ 182 (797)
T KOG1343|consen 108 AE----EGLNHSSSRYPSLYYTSASHSSADQASGSLSGSYKAVLAGKASNGKADFRPPG-HHSEPNLKVGFCLFNNVAER 182 (797)
T ss_pred ch----hhhhcccCCCCcceecCCchhhhcccCcccccccccccCCcccCccCcCCCCC-CccccchhcchhHHHHHHHH
Confidence 11 001111 11234566677888899999999998777776653 356677777 99999999999999999999
Q ss_pred HHHHHhcC--CcEEEEEcccCCCchhhhcccc--CCCeEEEeccCc--CCCCCC--CCCCCccCCCCCcceeecccCCC-
Q 041063 215 ILELLKVH--RRVLYVDIDVHHGDGVEEAFYT--TDRVMTVSFHKF--GDFFPG--TGHIKDVGAGQGKFYALNVPLND- 285 (490)
Q Consensus 215 a~~ll~~~--~RVliVD~DvHHGdGtqe~Fy~--d~~VltiSiH~~--g~ffPg--tG~~~e~G~g~G~g~~vNVPL~~- 285 (490)
+...+..+ +||+|+|||+|||+|||..|++ |++|+++|+|++ +.|||+ .|..+.+|.|.|.|+++|+|+..
T Consensus 183 ~~~~~~~~~~rri~i~d~dvh~g~Gtq~~~~~~~d~~vl~~s~~r~e~~~f~P~~~~g~~~~~~~g~~~g~~~nl~~~~~ 262 (797)
T KOG1343|consen 183 RSSPLLRRKKRRILIVDWDVHHGPGTQPSSPNNGDQRVLYFSLHRLETGPFLPNITLGLATLRGGGPGLGQTGNLPWNQV 262 (797)
T ss_pred hhccccccccceeEeecccccCCCCCCCccCCCcccccccccchhcccCCcCCCCccchHHHhCcCCCcceeeccchhhc
Confidence 98766555 8999999999999999999999 999999999999 889998 57778999999999999999975
Q ss_pred CCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCC-CCCcccchhhHHHHHHHHHhcC-CCEEEEcCCCCCCchh
Q 041063 286 GLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDR-LGCFNLSVKGHADCLRFLRSFN-VPLMVLGGGGYTIRNV 363 (490)
Q Consensus 286 G~~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDp-LG~~~Lt~~g~~~~~~~l~~~~-~pvl~lleGGY~~~~v 363 (490)
|++|.+|.++|..++.|...+|+||+|+++||||++.||+ +|.+..|+.+|..++...+-.+ +++.++++|||++..+
T Consensus 263 g~~~~dy~~~~~~~~~~~~~efqp~Lv~~sag~dA~lg~~~~~~m~~tP~~~~~~~~~~~~~~r~~l~v~~e~gy~le~l 342 (797)
T KOG1343|consen 263 GMTDADYEAAFLHVLLPHASEFQPDLLLVSAGFDALLGDGPVGLMAQTPLGYAHRTSMHRPLGRGQLVVVLEGGYFLEKL 342 (797)
T ss_pred CCcchhhhhhhhccCccchhhcCcceEEeeccccccccCcccCcccCCcccHHHHhccccccccCccceecchhHHHHHH
Confidence 8999999999999999999999999999999999999997 7999999999999998866566 8999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCcccccccCCCcccCcCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCC
Q 041063 364 ARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHA 431 (490)
Q Consensus 364 ar~w~~~t~~llg~~~~~~lP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~le~i~~~~~~~l~~l~~~ 431 (490)
+.. ......++|.+.+...-.. .+-....+.+..+.+.+.+.|......
T Consensus 343 ~~~-~~~~~~llg~~~~~~~~~~------------------~p~~~~~e~~~~~~~~~~~~w~~~~~~ 391 (797)
T KOG1343|consen 343 AQS-QLVLNKLLGKPIEQLRQPG------------------SPKEEAEEELQSVQAVQEDRWPCEGGS 391 (797)
T ss_pred HHh-hhhHHhhcCCCccccccCC------------------CchHHHHHHhhhhHHHhhcccccccCC
Confidence 987 6666778887654321100 123344555666666666666655443
No 9
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=71.77 E-value=11 Score=34.36 Aligned_cols=68 Identities=21% Similarity=0.331 Sum_probs=38.1
Q ss_pred eecccCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCC-CCCCCCCCCCcccchhhHHHHHHHHHhc--CCCEEEE
Q 041063 278 ALNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGA-DSLSGDRLGCFNLSVKGHADCLRFLRSF--NVPLMVL 353 (490)
Q Consensus 278 ~vNVPL~~G~~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~-Da~~gDpLG~~~Lt~~g~~~~~~~l~~~--~~pvl~l 353 (490)
.+|..+...+ -.+.+..+. ..+..++|++||++.|. |...+-+ ..-..+.|.++++.+++. +.+++++
T Consensus 25 v~N~Gi~G~~-~~~~~~~~~----~~~~~~~p~~vvi~~G~ND~~~~~~---~~~~~~~~~~lv~~i~~~~~~~~iil~ 95 (171)
T cd04502 25 VVNRGFGGST-LADCLHYFD----RLVLPYQPRRVVLYAGDNDLASGRT---PEEVLRDFRELVNRIRAKLPDTPIAII 95 (171)
T ss_pred eeecCcccch-HHHHHHHHH----hhhccCCCCEEEEEEecCcccCCCC---HHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 4555444332 223333333 33456899999999998 6543322 223345556677777765 4555554
No 10
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=70.39 E-value=9.4 Score=38.85 Aligned_cols=64 Identities=17% Similarity=0.337 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCCCch
Q 041063 291 SFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRN 362 (490)
Q Consensus 291 ~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~ 362 (490)
+|.+.|+..+ |-+..|+-..+||-.|-.+...| ++ +.+..-+..+.+.+.+++++.|||..+..
T Consensus 1 ~~~~~~~~~~-~yi~~~~~~~~VIKlGG~ai~~~-----~l--~~~~~~ia~l~~~g~~~ViVHGggp~i~~ 64 (280)
T cd04237 1 QFVDWFREAA-PYINAHRGKTFVIAFGGEAVAHP-----NF--DNIVHDIALLHSLGIRLVLVHGARPQIDQ 64 (280)
T ss_pred ChHHHHHHHh-HHHHHhCCCEEEEEEChHHhcCc-----hH--HHHHHHHHHHHHCCCcEEEEeCCCHHHHH
Confidence 3677888775 77899999999999998887654 22 23344445556668899999999987654
No 11
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=69.20 E-value=60 Score=30.64 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=13.0
Q ss_pred hcCCcEEEEEcccCCC
Q 041063 220 KVHRRVLYVDIDVHHG 235 (490)
Q Consensus 220 ~~~~RVliVD~DvHHG 235 (490)
+...||++||.|....
T Consensus 44 ~~G~rVllID~D~~~~ 59 (204)
T TIGR01007 44 QAGYKTLLIDGDMRNS 59 (204)
T ss_pred hCCCeEEEEeCCCCCh
Confidence 4468999999998764
No 12
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=68.12 E-value=22 Score=32.97 Aligned_cols=74 Identities=22% Similarity=0.232 Sum_probs=40.2
Q ss_pred ecccCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHH-h--cCCCEEEE
Q 041063 279 LNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLR-S--FNVPLMVL 353 (490)
Q Consensus 279 vNVPL~~G~~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~-~--~~~pvl~l 353 (490)
+|.-.+ |.+-..++..|...+.+....++||+|||..|..=.....-+....+.+.|.+.++.+. . .+.+++++
T Consensus 41 ~N~gi~-G~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~vi~~ 117 (193)
T cd01835 41 YNLGVR-GDGSEDVAARWRAEWSRRGELNVPNRLVLSVGLNDTARGGRKRPQLSARAFLFGLNQLLEEAKRLVPVLVV 117 (193)
T ss_pred EeecCC-CCCHHHHHHHHHHHHHhhcccCCCCEEEEEecCcccccccCcccccCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 454433 33444566666665554444589999999999864433211122345566655443332 2 24566554
No 13
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=67.10 E-value=4.6 Score=36.97 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=29.7
Q ss_pred cccCCCCcchh----cHHHH-HHHHHHhc--CCcEEEEEcccCCCchhh
Q 041063 198 KKSEASGFCYV----NDIVL-GILELLKV--HRRVLYVDIDVHHGDGVE 239 (490)
Q Consensus 198 ~~~~a~GFC~~----NdvaI-Aa~~ll~~--~~RVliVD~DvHHGdGtq 239 (490)
.+-.++|||++ ++-|. |++|+-.. -+|++-||||.-.=+|-|
T Consensus 73 ~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF~eGRQ 121 (153)
T KOG0121|consen 73 FKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGFVEGRQ 121 (153)
T ss_pred CCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccchhhhh
Confidence 45678999986 44444 44555433 289999999988777776
No 14
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=66.76 E-value=72 Score=30.44 Aligned_cols=24 Identities=8% Similarity=0.343 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecC
Q 041063 294 GLFRPIIQKVMEVYQPDAVVLQCG 317 (490)
Q Consensus 294 ~~f~~ii~pv~~~F~PdlIvvsaG 317 (490)
..++.++..+.++|++|+|||=++
T Consensus 134 ~~l~~~l~~l~~~y~~D~IiiD~p 157 (207)
T TIGR03018 134 QRMRSLLHELARRYPDRIIIIDTP 157 (207)
T ss_pred HHHHHHHHHHHhhCCCCEEEEECC
Confidence 346677777778888899999887
No 15
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=64.97 E-value=14 Score=35.67 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=15.4
Q ss_pred HHhcCCcEEEEEcccCCCc
Q 041063 218 LLKVHRRVLYVDIDVHHGD 236 (490)
Q Consensus 218 ll~~~~RVliVD~DvHHGd 236 (490)
|.+...||++||+|.++||
T Consensus 25 la~~g~~VlliD~D~~~~~ 43 (251)
T TIGR01969 25 LAKLGKKVLALDADITMAN 43 (251)
T ss_pred HHHCCCeEEEEeCCCCCcc
Confidence 3345689999999999887
No 16
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=64.32 E-value=22 Score=32.51 Aligned_cols=71 Identities=18% Similarity=0.291 Sum_probs=38.8
Q ss_pred eecccCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccch----hhHHHHHHHHHhc--CCCEE
Q 041063 278 ALNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSV----KGHADCLRFLRSF--NVPLM 351 (490)
Q Consensus 278 ~vNVPL~~G~~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~----~g~~~~~~~l~~~--~~pvl 351 (490)
..|..++..++. .+...-...+.+.+...+||+|||++|..=... ...+. +.+..+++.+++. +.+++
T Consensus 27 v~N~g~~G~t~~-~~~~~~~~~~~~~l~~~~pd~Vii~~G~ND~~~-----~~~~~~~~~~~~~~li~~i~~~~~~~~iv 100 (189)
T cd01825 27 YDNLGVNGASAS-LLLKWDAEFLQAQLAALPPDLVILSYGTNEAFN-----KQLNASEYRQQLREFIKRLRQILPNASIL 100 (189)
T ss_pred EecCccCchhhh-hhhccCHHHHHHHHhhCCCCEEEEECCCccccc-----CCCCHHHHHHHHHHHHHHHHHHCCCCeEE
Confidence 345544443322 233222233445677899999999999654321 12334 4445566667663 55566
Q ss_pred EEc
Q 041063 352 VLG 354 (490)
Q Consensus 352 ~ll 354 (490)
++.
T Consensus 101 ~~~ 103 (189)
T cd01825 101 LVG 103 (189)
T ss_pred EEc
Confidence 653
No 17
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=60.05 E-value=82 Score=33.80 Aligned_cols=115 Identities=23% Similarity=0.357 Sum_probs=67.3
Q ss_pred HHHHHHHhcCCcEEEEEcccCCCc----hhhhccccCCCeEEEeccCcCCCCCCCCCCCccCCCCCcceeecccC-CCCC
Q 041063 213 LGILELLKVHRRVLYVDIDVHHGD----GVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPL-NDGL 287 (490)
Q Consensus 213 IAa~~ll~~~~RVliVD~DvHHGd----Gtqe~Fy~d~~VltiSiH~~g~ffPgtG~~~e~G~g~G~g~~vNVPL-~~G~ 287 (490)
+-+.|+.+...|.++||+|+-+|- |+-.++.-+. .+.. -.| ||-+ ..-..|+-+ .+..
T Consensus 122 ~L~nyavk~gr~Plfv~LDvgQ~sitiPGsiaA~~i~~---~~D~-~eG--f~l~-----------~pLV~~FG~~sp~~ 184 (415)
T KOG2749|consen 122 ILLNYAVKQGRRPLFVELDVGQGSITIPGSIAAIPIEM---PLDV-IEG--FSLT-----------APLVYNFGLTSPST 184 (415)
T ss_pred HHHHHHHHcCCcceEEEcCCCCCceecccchhheeccc---ccch-hhC--cccC-----------CceeeeccCCCCCc
Confidence 445678888899999999998872 4444432211 0000 000 1111 112334444 3455
Q ss_pred ChhHHHHHHHHHHHHHHHHh--CCC-----EEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCC
Q 041063 288 DDESFRGLFRPIIQKVMEVY--QPD-----AVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGG 356 (490)
Q Consensus 288 ~D~~yl~~f~~ii~pv~~~F--~Pd-----lIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleG 356 (490)
.-+-|...+.++-.-+-+++ +|+ .||=-|| |.. .+||+.+...++.|+.-+++|++-
T Consensus 185 N~~LY~~~~s~La~v~~~~~~~n~~ar~sG~iInT~g-----------~i~-~egy~~llhai~~f~v~vviVLg~ 248 (415)
T KOG2749|consen 185 NLELYKALVSELAEVLKQRLSLNPEARVSGCIINTCG-----------WIE-GEGYAALLHAIKAFEVDVVIVLGQ 248 (415)
T ss_pred CHHHHHHHHHHHHHHHHHHhccCchhcccceEEeccc-----------eec-cccHHHHHHHHHHcCccEEEEecc
Confidence 56778777776655555555 343 2332222 444 789999999999999988888753
No 18
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=58.74 E-value=37 Score=31.02 Aligned_cols=61 Identities=15% Similarity=0.258 Sum_probs=33.0
Q ss_pred CChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhH----HHHHHHHHhcCCCEEEE
Q 041063 287 LDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGH----ADCLRFLRSFNVPLMVL 353 (490)
Q Consensus 287 ~~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~----~~~~~~l~~~~~pvl~l 353 (490)
++.......+...+..++ .++||+|||..|..=... -..+.+.| ..+++.++..+.+++++
T Consensus 47 ~~G~~~~~~~~~~~~~~~-~~~~d~vii~~G~ND~~~-----~~~~~~~~~~~~~~~i~~i~~~~~~vil~ 111 (185)
T cd01832 47 VRGRRTAQILAEQLPAAL-ALRPDLVTLLAGGNDILR-----PGTDPDTYRADLEEAVRRLRAAGARVVVF 111 (185)
T ss_pred CCcchHHHHHHHHHHHHH-hcCCCEEEEecccccccc-----CCCCHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 333333333333344443 479999999999742211 12444444 44566666546666665
No 19
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=56.85 E-value=43 Score=30.19 Aligned_cols=46 Identities=15% Similarity=0.321 Sum_probs=29.7
Q ss_pred HHHHHhCCCEEEEecCCCCCCCCCCCCcccchhh----HHHHHHHHHhcCCCEEEE
Q 041063 302 KVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKG----HADCLRFLRSFNVPLMVL 353 (490)
Q Consensus 302 pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g----~~~~~~~l~~~~~pvl~l 353 (490)
..+..++||+|||+.|..=. ... .+.+. +.++++.+++.+.+++++
T Consensus 58 ~~~~~~~pd~v~i~~G~ND~----~~~--~~~~~~~~~l~~li~~~~~~~~~vil~ 107 (177)
T cd01822 58 ALLAQHKPDLVILELGGNDG----LRG--IPPDQTRANLRQMIETAQARGAPVLLV 107 (177)
T ss_pred HHHHhcCCCEEEEeccCccc----ccC--CCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 34456899999999997532 221 33433 445677777667777766
No 20
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=56.30 E-value=31 Score=31.85 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=36.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCC-CCCCCCCCCcccchhhHHHHHHHHHh--cCCCEEEE
Q 041063 286 GLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGAD-SLSGDRLGCFNLSVKGHADCLRFLRS--FNVPLMVL 353 (490)
Q Consensus 286 G~~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~D-a~~gDpLG~~~Lt~~g~~~~~~~l~~--~~~pvl~l 353 (490)
|.+-.+++..++. +..++||+|+|..|.. ...+. ...-..+.+.++++.+++ -+.+++++
T Consensus 50 G~t~~~~~~~l~~-----~~~~~pd~Vii~~G~ND~~~~~---~~~~~~~~l~~li~~i~~~~~~~~iiv~ 112 (191)
T cd01836 50 GATSADLLRQLAP-----LPETRFDVAVISIGVNDVTHLT---SIARWRKQLAELVDALRAKFPGARVVVT 112 (191)
T ss_pred CcCHHHHHHHHHh-----cccCCCCEEEEEecccCcCCCC---CHHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 3344556655544 3468999999999984 33221 122233455667777776 35666665
No 21
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=56.21 E-value=24 Score=30.25 Aligned_cols=48 Identities=15% Similarity=0.244 Sum_probs=29.6
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCC
Q 041063 300 IQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGY 358 (490)
Q Consensus 300 i~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY 358 (490)
+...+.+++||+|.+|+- +.-+.....++.+.+++.+..+.++.||.+
T Consensus 43 l~~~~~~~~pd~V~iS~~-----------~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 43 LVEALRAERPDVVGISVS-----------MTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp HHHHHHHTTCSEEEEEES-----------SSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred HHHHHhcCCCcEEEEEcc-----------CcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 335667889999999875 222334455677777766444455545544
No 22
>PRK05279 N-acetylglutamate synthase; Validated
Probab=55.91 E-value=31 Score=37.20 Aligned_cols=64 Identities=17% Similarity=0.333 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCCCch
Q 041063 291 SFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRN 362 (490)
Q Consensus 291 ~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~ 362 (490)
.|...|+..+ |-+.+|+=..+||-.|-.++..+ ++ +.+..-+..+...+.++|+|.|||+.+..
T Consensus 8 ~~~~~~~~~~-~~i~~~~~~~~VIk~GG~~l~~~-----~~--~~~~~~i~~l~~~g~~~VlVHGgg~~i~~ 71 (441)
T PRK05279 8 EFVDWFRHSA-PYINAHRGKTFVIMLGGEAIAHG-----NF--SNIVHDIALLHSLGIRLVLVHGARPQIEE 71 (441)
T ss_pred HHHHHHHHHh-HHHHHhCCCEEEEEECchhccCh-----hH--HHHHHHHHHHHHCCCeEEEECCCCHHHHH
Confidence 5788888775 77888998999999998887543 12 23444555666678899999999988654
No 23
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=55.75 E-value=50 Score=31.07 Aligned_cols=59 Identities=22% Similarity=0.340 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhc---CCCEEEEcC
Q 041063 289 DESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSF---NVPLMVLGG 355 (490)
Q Consensus 289 D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~---~~pvl~lle 355 (490)
.++...+|+.++. .+.+.+||+||+ +| |... ....+..-+..+.+.++++ ++|++++.|
T Consensus 23 ~~~~~~~~~~~~~-~~~~~~~d~i~~-~G-D~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G 84 (223)
T cd00840 23 REDQFEAFEEIVE-LAIEEKVDFVLI-AG-DLFD-----SNNPSPEALELLIEALRRLKEAGIPVFIIAG 84 (223)
T ss_pred hHHHHHHHHHHHH-HHHhcCCCEEEE-CC-cccC-----CCCCCHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 4567788888775 456679998775 33 4433 2233444455566666655 788887754
No 24
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=55.58 E-value=19 Score=38.81 Aligned_cols=63 Identities=21% Similarity=0.338 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCCCch
Q 041063 292 FRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRN 362 (490)
Q Consensus 292 yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~ 362 (490)
|...|.+.+ |-+..|+=..+||=.|-.+...+- + ..+..-+..++..+.++|+|.|||+.+..
T Consensus 1 ~~~~~~~~~-~~i~~~~~~~~ViK~GG~~~~~~~-----~--~~~~~~i~~l~~~g~~~vlVHGgg~~i~~ 63 (429)
T TIGR01890 1 FVAWFREAA-PYINAHRGKTFVVGLGGELVEGGN-----L--GNIVADIALLHSLGVRLVLVHGARPQIER 63 (429)
T ss_pred ChhHHhhhh-HHHHHhCCCEEEEEEChhhccCcc-----H--HHHHHHHHHHHHCCCcEEEEcCCCHHHHH
Confidence 345666664 888999999999999977765431 1 23555566677778899999999976543
No 25
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=54.37 E-value=53 Score=30.05 Aligned_cols=68 Identities=12% Similarity=0.201 Sum_probs=37.2
Q ss_pred eecccCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCC-CCCCcccchhhHHHHHHHHHhcCCCEEEE
Q 041063 278 ALNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGD-RLGCFNLSVKGHADCLRFLRSFNVPLMVL 353 (490)
Q Consensus 278 ~vNVPL~~G~~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gD-pLG~~~Lt~~g~~~~~~~l~~~~~pvl~l 353 (490)
.+|..+. |.+-.+++..++.. +...+||+|+|+.|..=.... ++. --.+.+.++++.+++.+.+++++
T Consensus 34 v~n~g~~-G~~~~~~l~~l~~~----~~~~~~d~v~i~~G~ND~~~~~~~~---~~~~~~~~li~~~~~~~~~~il~ 102 (183)
T cd04501 34 VINRGIN-GDTTSQMLVRFYED----VIALKPAVVIIMGGTNDIIVNTSLE---MIKDNIRSMVELAEANGIKVILA 102 (183)
T ss_pred EEecCcC-CccHHHHHHHHHHH----HHhcCCCEEEEEeccCccccCCCHH---HHHHHHHHHHHHHHHCCCcEEEE
Confidence 3454333 23333455544433 345799999999998633321 111 12344455667777766666665
No 26
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=53.09 E-value=1.2e+02 Score=34.33 Aligned_cols=146 Identities=19% Similarity=0.211 Sum_probs=84.9
Q ss_pred CCCCcchhc---HHHHHHHHHHhcCCcEEEEEcccCCCchhhhccccCCCeEEEeccCcCCCCCCCCCCCccCCCCCcce
Q 041063 201 EASGFCYVN---DIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFY 277 (490)
Q Consensus 201 ~a~GFC~~N---dvaIAa~~ll~~~~RVliVD~DvHHGdGtqe~Fy~d~~VltiSiH~~g~ffPgtG~~~e~G~g~G~g~ 277 (490)
...++|-++ +..+ |...+...=- .-||+|.|-=|++-.+|...|--.-||.=. ||+|+.....-.--+..|
T Consensus 312 ~~~~~~~~~~~dd~e~-a~~I~~d~Id-ILvDl~g~T~d~r~~v~A~RpAPiqvswlG----y~aT~g~p~~DY~I~D~y 385 (620)
T COG3914 312 AVEKWYPIGRMDDAEI-ANAIRTDGID-ILVDLDGHTVDTRCQVFAHRPAPIQVSWLG----YPATTGSPNMDYFISDPY 385 (620)
T ss_pred hhhheeccCCcCHHHH-HHHHHhcCCe-EEEeccCceeccchhhhhcCCCceEEeecc----cccccCCCcceEEeeCce
Confidence 345777777 3333 2232222212 458999999999999999999777777632 677755322211111222
Q ss_pred eecccCCCCCChhHHHHHHHHHH---H---------HHHHH----hCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHH
Q 041063 278 ALNVPLNDGLDDESFRGLFRPII---Q---------KVMEV----YQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLR 341 (490)
Q Consensus 278 ~vNVPL~~G~~D~~yl~~f~~ii---~---------pv~~~----F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~ 341 (490)
+ | |++. .+.|-..+-.+= . |-.++ -.++++|..||- +.+..+++-+....+
T Consensus 386 ~--v--Pp~a-e~yysEkl~RLp~cy~p~d~~~~v~p~~sR~~lglp~~avVf~c~~--------n~~K~~pev~~~wmq 452 (620)
T COG3914 386 T--V--PPTA-EEYYSEKLWRLPQCYQPVDGFEPVTPPPSRAQLGLPEDAVVFCCFN--------NYFKITPEVFALWMQ 452 (620)
T ss_pred e--c--CchH-HHHHHHHHHhcccccCCCCCcccCCCCcchhhcCCCCCeEEEEecC--------CcccCCHHHHHHHHH
Confidence 2 2 2221 233433332210 0 00111 134688888873 567788888887888
Q ss_pred HHHhcCCCEEEEcCCCCCCchhHH
Q 041063 342 FLRSFNVPLMVLGGGGYTIRNVAR 365 (490)
Q Consensus 342 ~l~~~~~pvl~lleGGY~~~~var 365 (490)
.|+....-++++.+||=+....++
T Consensus 453 IL~~vP~Svl~L~~~~~~~~~~~~ 476 (620)
T COG3914 453 ILSAVPNSVLLLKAGGDDAEINAR 476 (620)
T ss_pred HHHhCCCcEEEEecCCCcHHHHHH
Confidence 888887789999999966444333
No 27
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=51.90 E-value=44 Score=29.28 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=30.3
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCC
Q 041063 298 PIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYT 359 (490)
Q Consensus 298 ~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~ 359 (490)
..+..+.+.++||+|.+|+= ..+.....++++.+|+....+.++.||.+.
T Consensus 29 ~~~~~~~~~~~pdiv~~S~~------------~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~ 78 (127)
T cd02068 29 DIVEDIKELLKPDVVGISLM------------TSAIYEALELAKIAKEVLPNVIVVVGGPHA 78 (127)
T ss_pred HHHHHHHHhcCCCEEEEeec------------cccHHHHHHHHHHHHHHCCCCEEEECCcch
Confidence 33444444499999999841 122334566788888875445666555443
No 28
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=51.86 E-value=49 Score=29.89 Aligned_cols=44 Identities=25% Similarity=0.278 Sum_probs=27.0
Q ss_pred HhCCCEEEEecCCCCCCCCCCCCc--ccchhhHHHHHHHHHh--cCCCEEEE
Q 041063 306 VYQPDAVVLQCGADSLSGDRLGCF--NLSVKGHADCLRFLRS--FNVPLMVL 353 (490)
Q Consensus 306 ~F~PdlIvvsaG~Da~~gDpLG~~--~Lt~~g~~~~~~~l~~--~~~pvl~l 353 (490)
.++||+||++.|..=. ...+ .-..+.+..+++.+++ -+.+++++
T Consensus 46 ~~~pd~vvl~~G~ND~----~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~ 93 (169)
T cd01828 46 ALQPKAIFIMIGINDL----AQGTSDEDIVANYRTILEKLRKHFPNIKIVVQ 93 (169)
T ss_pred ccCCCEEEEEeeccCC----CCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 6899999999996432 2222 1222445556676766 35666665
No 29
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=51.36 E-value=35 Score=35.02 Aligned_cols=58 Identities=22% Similarity=0.401 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccc----hhhHHHHHHHHHhc--CCCEEEEcCC
Q 041063 298 PIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLS----VKGHADCLRFLRSF--NVPLMVLGGG 356 (490)
Q Consensus 298 ~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt----~~g~~~~~~~l~~~--~~pvl~lleG 356 (490)
..|.+++++++||++|| .|-|++..+.-.-.+|. .+-|-++++.++.+ +.-=|++..|
T Consensus 143 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y~~~~D~LVIFAG 206 (283)
T TIGR02855 143 EKVLDLIEEVRPDILVI-TGHDAYSKNKGNYMDLNAYRHSKYFVETVREARKYVPSLDQLVIFAG 206 (283)
T ss_pred HHHHHHHHHhCCCEEEE-eCchhhhcCCCChhhhhhhhhhHHHHHHHHHHHhcCCCcccEEEEcc
Confidence 35668899999998766 89999986643333332 23345677777766 3334666666
No 30
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=49.93 E-value=72 Score=27.25 Aligned_cols=66 Identities=14% Similarity=0.245 Sum_probs=33.9
Q ss_pred eecccCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCC--CEEEEcC
Q 041063 278 ALNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNV--PLMVLGG 355 (490)
Q Consensus 278 ~vNVPL~~G~~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~--pvl~lle 355 (490)
++|+|+.. +..-+..++.. +...+.+.||+.|+..... +.....++.+.++..+. .-+..++
T Consensus 42 Ai~ip~~~------~~~~~~~~~~~-~~~~~~~~iv~~C~~~g~r---------s~~a~~~l~~~l~~~G~~~~~v~~l~ 105 (113)
T cd01443 42 SINLPAQS------CYQTLPQVYAL-FSLAGVKLAIFYCGSSQGR---------GPRAARWFADYLRKVGESLPKSYILT 105 (113)
T ss_pred ceecchhH------HHHHHHHHHHH-hhhcCCCEEEEECCCCCcc---------cHHHHHHHHHHHhccCCCCCeEEEEC
Confidence 68998853 11112222222 2234567888888743221 22223334444544453 4467779
Q ss_pred CCCC
Q 041063 356 GGYT 359 (490)
Q Consensus 356 GGY~ 359 (490)
|||+
T Consensus 106 GG~~ 109 (113)
T cd01443 106 GGIK 109 (113)
T ss_pred Chhh
Confidence 9986
No 31
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=47.39 E-value=1.3e+02 Score=32.22 Aligned_cols=72 Identities=15% Similarity=0.268 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecC-CCCCCCCCCCCcccchhhHHHHHHHHH-hcCCCEEEEcCCCCCCchhHHHHHHHH
Q 041063 294 GLFRPIIQKVMEVYQPDAVVLQCG-ADSLSGDRLGCFNLSVKGHADCLRFLR-SFNVPLMVLGGGGYTIRNVARCWCYET 371 (490)
Q Consensus 294 ~~f~~ii~pv~~~F~PdlIvvsaG-~Da~~gDpLG~~~Lt~~g~~~~~~~l~-~~~~pvl~lleGGY~~~~var~w~~~t 371 (490)
.-+.+.|..+.+.|+|++|+|..+ .....||- ...+++.++ +.++|++.+--.||.-.+....|....
T Consensus 75 ~kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGdD----------i~~v~~~~~~~~~~pvi~v~t~gf~g~~~~~G~~~a~ 144 (426)
T cd01972 75 KKLEDTIKEAYSRYKPKAIFVATSCATGIIGDD----------VESVVEELEDEIGIPVVALHCEGFKGKHWRSGFDAAF 144 (426)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCChHHHhccC----------HHHHHHHHHHhhCCCEEEEeCCccCCccHhHHHHHHH
Confidence 355566777888999997766554 34445552 334555554 468999999999998755555554444
Q ss_pred HHHh
Q 041063 372 AVAV 375 (490)
Q Consensus 372 ~~ll 375 (490)
..++
T Consensus 145 ~al~ 148 (426)
T cd01972 145 HGIL 148 (426)
T ss_pred HHHH
Confidence 4444
No 32
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=47.26 E-value=66 Score=29.15 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=38.7
Q ss_pred eecccCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhc--CCCEEEE
Q 041063 278 ALNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSF--NVPLMVL 353 (490)
Q Consensus 278 ~vNVPL~~G~~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~--~~pvl~l 353 (490)
.+|..+...+ -..++..+ .+.+..++||+|||..|..=..... ...-..+.+.++++.+++. +.+++++
T Consensus 26 v~n~g~~G~t-~~~~~~~~----~~~~~~~~pd~v~i~~G~ND~~~~~--~~~~~~~~~~~l~~~~~~~~p~~~vi~~ 96 (174)
T cd01841 26 VNNLGIAGIS-SRQYLEHI----EPQLIQKNPSKVFLFLGTNDIGKEV--SSNQFIKWYRDIIEQIREEFPNTKIYLL 96 (174)
T ss_pred EEeccccccc-HHHHHHHH----HHHHHhcCCCEEEEEeccccCCCCC--CHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 5666665433 33444444 2334568999999999985443221 2222344556677777654 4455544
No 33
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=46.84 E-value=61 Score=30.04 Aligned_cols=53 Identities=26% Similarity=0.384 Sum_probs=29.1
Q ss_pred HHHHHhCCCEEEEecCCCCCCCCCCCC--ccc-c---hhhH----HHHHHHHHhcCCCEEEEc
Q 041063 302 KVMEVYQPDAVVLQCGADSLSGDRLGC--FNL-S---VKGH----ADCLRFLRSFNVPLMVLG 354 (490)
Q Consensus 302 pv~~~F~PdlIvvsaG~Da~~gDpLG~--~~L-t---~~g~----~~~~~~l~~~~~pvl~ll 354 (490)
..+.+.+||+||+..|..=+.....+. ... + .+.| ..+++.++..+.+++++.
T Consensus 53 ~~l~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~~~~vili~ 115 (200)
T cd01829 53 ELIAEEKPDVVVVFLGANDRQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARAKGVPVIWVG 115 (200)
T ss_pred HHHhcCCCCEEEEEecCCCCccccCCCceeecCChhHHHHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 445678999999999985433211111 000 0 1233 345555565577777663
No 34
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=45.44 E-value=48 Score=31.28 Aligned_cols=49 Identities=8% Similarity=0.145 Sum_probs=27.9
Q ss_pred HHHhCCCEEEEecCCCCCCCCCCC--Ccccch----hhHHHHHHHHHhcCCCEEE
Q 041063 304 MEVYQPDAVVLQCGADSLSGDRLG--CFNLSV----KGHADCLRFLRSFNVPLMV 352 (490)
Q Consensus 304 ~~~F~PdlIvvsaG~Da~~gDpLG--~~~Lt~----~g~~~~~~~l~~~~~pvl~ 352 (490)
+..-+|++|+|.+|..=......+ .-.++. +.+..+++.+++.+.++++
T Consensus 70 ~~~~~p~~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~vil 124 (204)
T cd01830 70 LSQPGVRTVIILEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAHARGIKVIG 124 (204)
T ss_pred hcCCCCCEEEEecccccccccccccccCCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 344479999999998643321110 011233 4455677777766666654
No 35
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=45.28 E-value=1.3e+02 Score=32.54 Aligned_cols=71 Identities=14% Similarity=0.180 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhCCCEEE-EecCCCCCCCCCCCCcccchhhHHHHHHHHHh----cCCCEEEEcCCCCCCchhHHHHHH
Q 041063 295 LFRPIIQKVMEVYQPDAVV-LQCGADSLSGDRLGCFNLSVKGHADCLRFLRS----FNVPLMVLGGGGYTIRNVARCWCY 369 (490)
Q Consensus 295 ~f~~ii~pv~~~F~PdlIv-vsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~----~~~pvl~lleGGY~~~~var~w~~ 369 (490)
-+++.|..+.+.|+|++|+ +++......||- +..+++.++. .+.|++.+--.||.- +....|..
T Consensus 71 kL~~aI~~~~~~~~P~~I~V~ttc~~~iiGdD----------i~~v~~~~~~~~~~~~~~vi~v~t~gF~g-~~~~G~~~ 139 (429)
T cd03466 71 NLKKGLKNVIEQYNPEVIGIATTCLSETIGED----------VPRIIREFREEVDDSEPKIIPASTPGYGG-THVEGYDT 139 (429)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHhhcC----------HHHHHHHHhhcccCCCCcEEEEECCCCcc-cHHHHHHH
Confidence 4556666788899999754 455556666663 3345555554 367999998999974 44455554
Q ss_pred HHHHHhC
Q 041063 370 ETAVAVG 376 (490)
Q Consensus 370 ~t~~llg 376 (490)
....++.
T Consensus 140 a~~al~~ 146 (429)
T cd03466 140 AVRSIVK 146 (429)
T ss_pred HHHHHHH
Confidence 4444443
No 36
>PLN02825 amino-acid N-acetyltransferase
Probab=44.66 E-value=44 Score=37.23 Aligned_cols=63 Identities=13% Similarity=0.252 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCCCch
Q 041063 292 FRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRN 362 (490)
Q Consensus 292 yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~ 362 (490)
|...|++.. |-+..|+=..+||-.|-.+...+ . ...+.+-+.+|.+.++++|+|.|||..+..
T Consensus 1 ~v~~fr~a~-pYI~~~rgktfVIk~gG~~l~~~---~----~~~l~~DialL~~lGi~~VlVHGggpqI~~ 63 (515)
T PLN02825 1 FVRWFREAW-PYIQGHRGSTFVVVISGEVVAGP---H----LDNILQDISLLHGLGIKFVLVPGTHVQIDK 63 (515)
T ss_pred ChhHHHhhh-HHHHHHCCCEEEEEECchhhcCc---h----HHHHHHHHHHHHHCCCCEEEEcCCCHHHHH
Confidence 455677764 88899999999999998887643 1 234555667788899999999999987653
No 37
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=43.87 E-value=17 Score=32.06 Aligned_cols=72 Identities=17% Similarity=0.298 Sum_probs=35.7
Q ss_pred ecccCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHH----HHHHHHHhcCCCEEEEc
Q 041063 279 LNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHA----DCLRFLRSFNVPLMVLG 354 (490)
Q Consensus 279 vNVPL~~G~~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~----~~~~~l~~~~~pvl~ll 354 (490)
.|.-.+ |.+-..++..+...+.+ +...+||+|||+.|..=.... .....+.+.|. ++++.++..+ +++++.
T Consensus 34 ~n~~~~-G~~~~~~~~~~~~~~~~-~~~~~~d~vvi~~G~ND~~~~--~~~~~~~~~~~~~l~~~i~~~~~~~-~vi~~~ 108 (179)
T PF13472_consen 34 YNLGVS-GATSSDFLARLQRDVLR-FKDPKPDLVVISFGTNDVLNG--DENDTSPEQYEQNLRRIIEQLRPHG-PVILVS 108 (179)
T ss_dssp EEEE-T-T-BHHHHHHHHHHHCHH-HCGTTCSEEEEE--HHHHCTC--TTCHHHHHHHHHHHHHHHHHHHTTS-EEEEEE
T ss_pred EEEeec-CccHhHHHHHHHHHHhh-hccCCCCEEEEEccccccccc--ccccccHHHHHHHHHHHHHhhcccC-cEEEec
Confidence 344442 33344455556555544 578999999999996333221 12333344343 3444444444 666664
Q ss_pred C
Q 041063 355 G 355 (490)
Q Consensus 355 e 355 (490)
-
T Consensus 109 ~ 109 (179)
T PF13472_consen 109 P 109 (179)
T ss_dssp -
T ss_pred C
Confidence 4
No 38
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=43.48 E-value=33 Score=32.73 Aligned_cols=48 Identities=19% Similarity=0.307 Sum_probs=27.9
Q ss_pred HHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhc--CCCEEEE
Q 041063 304 MEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSF--NVPLMVL 353 (490)
Q Consensus 304 ~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~--~~pvl~l 353 (490)
+..++|++|||.+|..=..... ...-..+.+..+++.+++. +.+++++
T Consensus 85 l~~~~pd~VvI~~G~ND~~~~~--~~~~~~~~l~~ii~~l~~~~P~~~Iil~ 134 (214)
T cd01820 85 LDGVNPKVVVLLIGTNNIGHTT--TAEEIAEGILAIVEEIREKLPNAKILLL 134 (214)
T ss_pred ccCCCCCEEEEEecccccCCCC--CHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 4467999999999986442210 1111224455567777665 4455544
No 39
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=42.85 E-value=56 Score=33.71 Aligned_cols=58 Identities=24% Similarity=0.426 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccc----hhhHHHHHHHHHhc--CCCEEEEcCC
Q 041063 298 PIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLS----VKGHADCLRFLRSF--NVPLMVLGGG 356 (490)
Q Consensus 298 ~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt----~~g~~~~~~~l~~~--~~pvl~lleG 356 (490)
..|..++++++||++|| .|-|++..+.-.-.+|. .+-|-+.++.++.+ +.--|++..|
T Consensus 144 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~ep~~D~LVIfAG 207 (287)
T PF05582_consen 144 EKIYRLLEEYRPDILVI-TGHDGYLKNKKDYSDLNNYRNSKYFVEAVKEARKYEPNLDDLVIFAG 207 (287)
T ss_pred HHHHHHHHHcCCCEEEE-eCchhhhcCCCChhhhhhhhccHHHHHHHHHHHhcCCCcccEEEEcc
Confidence 35667889999998766 89999987752222332 22344567777765 3334555566
No 40
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=42.68 E-value=55 Score=29.92 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=26.6
Q ss_pred CCCEEEEecCCCCCCCCCCCCcccchhhH----HHHHHHHHh--cCCCEEEE
Q 041063 308 QPDAVVLQCGADSLSGDRLGCFNLSVKGH----ADCLRFLRS--FNVPLMVL 353 (490)
Q Consensus 308 ~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~----~~~~~~l~~--~~~pvl~l 353 (490)
+||+|||+.|..=.....- .-..+.+-| ..+++.+++ -+.+++++
T Consensus 63 ~pd~vii~~G~ND~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~ 113 (199)
T cd01838 63 QPDLVTIFFGANDAALPGQ-PQHVPLDEYKENLRKIVSHLKSLSPKTKVILI 113 (199)
T ss_pred CceEEEEEecCccccCCCC-CCcccHHHHHHHHHHHHHHHHhhCCCCeEEEe
Confidence 8999999999864433210 011344444 456666666 35666666
No 41
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=42.07 E-value=1.1e+02 Score=33.44 Aligned_cols=70 Identities=16% Similarity=0.272 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecC-CCCCCCCCCCCcccchhhHHHHHHHHHhc-----CCCEEEEcCCCCCCchhHHHHH
Q 041063 295 LFRPIIQKVMEVYQPDAVVLQCG-ADSLSGDRLGCFNLSVKGHADCLRFLRSF-----NVPLMVLGGGGYTIRNVARCWC 368 (490)
Q Consensus 295 ~f~~ii~pv~~~F~PdlIvvsaG-~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~-----~~pvl~lleGGY~~~~var~w~ 368 (490)
-+++.|..+.+.|+|++|+|..+ .-...||-+ ..+++.++.. +.|++.+--.||.- +....|.
T Consensus 79 ~L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDDi----------~~v~~~~~~~~p~~~~~pvi~v~tpgF~g-~~~~G~~ 147 (455)
T PRK14476 79 NVEEAILNICKKAKPKIIGLCTTGLTETRGDDV----------AGALKEIRARHPELADTPIVYVSTPDFKG-ALEDGWA 147 (455)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCcchHhhhhccH----------HHHHHHHHhhccccCCCeEEEecCCCCCC-cHHHHHH
Confidence 34455667778899998866554 477777742 3344444432 68999999999975 4455555
Q ss_pred HHHHHHh
Q 041063 369 YETAVAV 375 (490)
Q Consensus 369 ~~t~~ll 375 (490)
.....++
T Consensus 148 ~a~~al~ 154 (455)
T PRK14476 148 AAVEAIV 154 (455)
T ss_pred HHHHHHH
Confidence 4444443
No 42
>PRK04531 acetylglutamate kinase; Provisional
Probab=41.98 E-value=38 Score=36.46 Aligned_cols=54 Identities=19% Similarity=0.388 Sum_probs=41.6
Q ss_pred HHHHHHhCC----CEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCCCch
Q 041063 301 QKVMEVYQP----DAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRN 362 (490)
Q Consensus 301 ~pv~~~F~P----dlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~ 362 (490)
.+-++.|+- ..+||-.|-.++.. + .+.+...+.+|.+.+.++|+|.|||..++.
T Consensus 24 ~~~l~~F~~~~~~~~~VIKiGG~~l~~-~-------~~~l~~dla~L~~~G~~~VlVHGggpqI~~ 81 (398)
T PRK04531 24 SQYLKRFSQLDAERFAVIKVGGAVLRD-D-------LEALASSLSFLQEVGLTPIVVHGAGPQLDA 81 (398)
T ss_pred HHHHHHHhCcCCCcEEEEEEChHHhhc-C-------HHHHHHHHHHHHHCCCcEEEEECCCHHHHH
Confidence 355666765 78999999777763 2 366778888899999999999999987653
No 43
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=41.58 E-value=75 Score=32.37 Aligned_cols=64 Identities=16% Similarity=0.298 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCCCc
Q 041063 291 SFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIR 361 (490)
Q Consensus 291 ~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~ 361 (490)
+....|++.. |-+..|+=..+||-.|-+++..+.+ .+.+.+=+.++...+.++++|.|||....
T Consensus 6 ~~~~~~~~~~-pyi~~~~~~~~VIk~gG~~~~~~~l------~~~~~~di~~l~~~g~~~VlVHGgg~~i~ 69 (284)
T CHL00202 6 ERVQVLSEAL-PYIQKFRGRIMVIKYGGAAMKNLIL------KADIIKDILFLSCIGLKIVVVHGGGPEIN 69 (284)
T ss_pred HHHHHHHHHH-HHHHHHcCCeEEEEEChHHhcCcch------HHHHHHHHHHHHHCCCcEEEEeCCcHHHH
Confidence 4566777764 8889999999999999777654322 12234445566778899999999998653
No 44
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=41.51 E-value=92 Score=32.83 Aligned_cols=66 Identities=23% Similarity=0.348 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhc---CCCEEEEcCCCCCCchhHH
Q 041063 289 DESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSF---NVPLMVLGGGGYTIRNVAR 365 (490)
Q Consensus 289 D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~---~~pvl~lleGGY~~~~var 365 (490)
-+++..+|..++ .++.+-++|+||++ ||-+=..+.+.+.-....+.++.+ ++|++++- | |.+..++
T Consensus 22 ~~d~~~~f~~~l-~~a~~~~vD~vliA-------GDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~-G--NHD~~~~ 90 (390)
T COG0420 22 LEDQKKAFDELL-EIAKEEKVDFVLIA-------GDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIA-G--NHDSPSR 90 (390)
T ss_pred hHHHHHHHHHHH-HHHHHccCCEEEEc-------cccccCCCCCHHHHHHHHHHHHHhccCCCcEEEec-C--CCCchhc
Confidence 467788888877 45677899999974 676666777888777777777665 68998884 4 4444443
No 45
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=41.45 E-value=1.6e+02 Score=32.30 Aligned_cols=69 Identities=12% Similarity=0.179 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHh-CCCEE-EEecCCCCCCCCCCCCcccchhhHHHHHHHHHh---------cCCCEEEEcCCCCCCchhH
Q 041063 296 FRPIIQKVMEVY-QPDAV-VLQCGADSLSGDRLGCFNLSVKGHADCLRFLRS---------FNVPLMVLGGGGYTIRNVA 364 (490)
Q Consensus 296 f~~ii~pv~~~F-~PdlI-vvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~---------~~~pvl~lleGGY~~~~va 364 (490)
+++.|..+.+.| +|++| |++++.....||-+ ..+++.++. .+.|++.+--+||.- +..
T Consensus 80 L~~ai~~~~~~~~~p~~i~v~ttc~~eiiGDDi----------~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~g-s~~ 148 (461)
T TIGR02931 80 VEEAVDVLLTRYPDVKVVPIITTCSTEIIGDDV----------DGLISKLNEELLKEKFPDREVHLIPIHTPSFVG-SMI 148 (461)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCchHHhhhcCH----------HHHHHHHHhhhcccccCCCCCeEEEeeCCCCCC-cHH
Confidence 556777888899 59976 67777788888843 234444432 257899999999986 445
Q ss_pred HHHHHHHHHHh
Q 041063 365 RCWCYETAVAV 375 (490)
Q Consensus 365 r~w~~~t~~ll 375 (490)
..|......++
T Consensus 149 ~Gy~~a~~ali 159 (461)
T TIGR02931 149 TGYDVAVHDFV 159 (461)
T ss_pred HHHHHHHHHHH
Confidence 55554444444
No 46
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=41.29 E-value=73 Score=28.29 Aligned_cols=43 Identities=16% Similarity=0.170 Sum_probs=25.5
Q ss_pred HHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhc
Q 041063 302 KVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSF 346 (490)
Q Consensus 302 pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~ 346 (490)
..+..++||+|||+.|..=...- ....-..+.+..+++.++..
T Consensus 34 ~~~~~~~pd~vvi~~G~ND~~~~--~~~~~~~~~~~~~i~~i~~~ 76 (157)
T cd01833 34 DWVLAAKPDVVLLHLGTNDLVLN--RDPDTAPDRLRALIDQMRAA 76 (157)
T ss_pred hccccCCCCEEEEeccCcccccC--CCHHHHHHHHHHHHHHHHHh
Confidence 34456899999999998643221 01112234455567777665
No 47
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=40.92 E-value=61 Score=29.77 Aligned_cols=48 Identities=13% Similarity=0.394 Sum_probs=30.6
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhc--CCCEEEE
Q 041063 301 QKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSF--NVPLMVL 353 (490)
Q Consensus 301 ~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~--~~pvl~l 353 (490)
..++...+||+|||..|..=...+ .-..+.+..+++.+++. +.|++++
T Consensus 50 ~~~~~~~~pd~vii~~G~ND~~~~-----~~~~~~~~~~i~~i~~~~p~~~iil~ 99 (177)
T cd01844 50 AELLRDVPADLYIIDCGPNIVGAE-----AMVRERLGPLVKGLRETHPDTPILLV 99 (177)
T ss_pred HHHHHhcCCCEEEEEeccCCCccH-----HHHHHHHHHHHHHHHHHCcCCCEEEE
Confidence 344566899999999998743221 12245566677777764 4566655
No 48
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=40.29 E-value=12 Score=37.82 Aligned_cols=54 Identities=15% Similarity=0.309 Sum_probs=34.7
Q ss_pred HHHHHHHhCCCEEEEecCC---CCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEE
Q 041063 300 IQKVMEVYQPDAVVLQCGA---DSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVL 353 (490)
Q Consensus 300 i~pv~~~F~PdlIvvsaG~---Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~l 353 (490)
+..++++++||+||..+|+ |....+|-..+.+...+-..+.+.++..+.+++.+
T Consensus 43 ~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~ 99 (286)
T PF04321_consen 43 VAKLLEAFKPDVVINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHI 99 (286)
T ss_dssp HHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEE
T ss_pred HHHHHHHhCCCeEeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEe
Confidence 4456678999999999987 44445676677777777778888888888887654
No 49
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=39.88 E-value=1.4e+02 Score=31.61 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=18.0
Q ss_pred cHHHHHHHHHHhcC--CcEEEEEcccCCCchhhh
Q 041063 209 NDIVLGILELLKVH--RRVLYVDIDVHHGDGVEE 240 (490)
Q Consensus 209 NdvaIAa~~ll~~~--~RVliVD~DvHHGdGtqe 240 (490)
.||+-+...+.+.+ .||+ +|.=||||-.+
T Consensus 239 ~di~~~~~~l~~~~lp~~vm---VD~SH~ns~k~ 269 (344)
T TIGR00034 239 ADVAAAKKQLEKAGLPPHLM---IDFSHGNSNKD 269 (344)
T ss_pred HHHHHHHHHHHHcCCCCeEE---EeCCCcccccc
Confidence 57776665555544 3454 37799998643
No 50
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=39.86 E-value=57 Score=36.08 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC-CCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCCCch
Q 041063 295 LFRPIIQKVMEVYQPDAVVLQCGA-DSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRN 362 (490)
Q Consensus 295 ~f~~ii~pv~~~F~PdlIvvsaG~-Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~ 362 (490)
.++..|..+.++|+|++|+|..+. -...||.++. +++.+..-+.|++.+--.||.-..
T Consensus 72 ~L~~aI~~~~~~~~P~~I~V~sTC~selIGdDi~~----------~~~~~~~~~~pvi~v~t~gf~g~~ 130 (511)
T TIGR01278 72 RLVDTVRRVDDRFKPDLIVVTPSCTSSLLQEDLGN----------LAAAAGLDKSKVIVADVNAYRRKE 130 (511)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHH----------HHHHhccCCCcEEEecCCCcccch
Confidence 455666778889999988877766 7777775433 333333226899999888888653
No 51
>PRK13236 nitrogenase reductase; Reviewed
Probab=39.47 E-value=31 Score=35.22 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=17.8
Q ss_pred hcCCcEEEEEcccCCCchhhhccc
Q 041063 220 KVHRRVLYVDIDVHHGDGVEEAFY 243 (490)
Q Consensus 220 ~~~~RVliVD~DvHHGdGtqe~Fy 243 (490)
+..+|||+||.|.+++| |.-+|.
T Consensus 32 ~~G~rVLliD~D~q~~~-~~~l~~ 54 (296)
T PRK13236 32 EMGQRILIVGCDPKADS-TRLMLH 54 (296)
T ss_pred HCCCcEEEEEccCCCCc-cchhcc
Confidence 35689999999999988 544443
No 52
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=38.61 E-value=2.7e+02 Score=30.14 Aligned_cols=70 Identities=13% Similarity=0.243 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEec-CCCCCCCCCCCCcccchhhHHHHHHHHHh-----cCCCEEEEcCCCCCCchhHHHHH
Q 041063 295 LFRPIIQKVMEVYQPDAVVLQC-GADSLSGDRLGCFNLSVKGHADCLRFLRS-----FNVPLMVLGGGGYTIRNVARCWC 368 (490)
Q Consensus 295 ~f~~ii~pv~~~F~PdlIvvsa-G~Da~~gDpLG~~~Lt~~g~~~~~~~l~~-----~~~pvl~lleGGY~~~~var~w~ 368 (490)
-+++.|..+.+.|+|++|+|.. +.....||-+ ..+++.++. .++|++.+--.||.- +....|.
T Consensus 78 ~L~~~I~~~~~~~~P~~I~V~ttC~~eiIGDDi----------~~v~~~~~~e~p~~~~~pvi~v~tpgf~g-~~~~G~~ 146 (432)
T TIGR01285 78 HIEEAIDTLCQRNKPKAIGLLSTGLTETRGEDI----------ARVVRQFREKHPQHKGTAVVTVNTPDFKG-SLEDGYA 146 (432)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccccccCH----------HHHHHHHHhhcccccCCeEEEecCCCcCC-chHHHHH
Confidence 4455566778899999776654 4455667633 335555543 378999999999985 4444554
Q ss_pred HHHHHHh
Q 041063 369 YETAVAV 375 (490)
Q Consensus 369 ~~t~~ll 375 (490)
.....++
T Consensus 147 ~a~~al~ 153 (432)
T TIGR01285 147 AAVESII 153 (432)
T ss_pred HHHHHHH
Confidence 4343343
No 53
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=38.29 E-value=1e+02 Score=31.21 Aligned_cols=83 Identities=12% Similarity=0.201 Sum_probs=45.4
Q ss_pred hhhhccccCCCeEEEeccCcCCCCCC-CCCCCccCCCCCcceeecccCCC--CCChhHHHHHHHHHHHHHHHH---hCCC
Q 041063 237 GVEEAFYTTDRVMTVSFHKFGDFFPG-TGHIKDVGAGQGKFYALNVPLND--GLDDESFRGLFRPIIQKVMEV---YQPD 310 (490)
Q Consensus 237 Gtqe~Fy~d~~VltiSiH~~g~ffPg-tG~~~e~G~g~G~g~~vNVPL~~--G~~D~~yl~~f~~ii~pv~~~---F~Pd 310 (490)
+-..+|+-|.|+.-++ |-+.+|=+. .+.++.+-.-...-|.+|--|.. ...-+.|...+...+ .. =..|
T Consensus 70 ~kW~if~~DER~Vp~~-~~dSNyg~~~~~~l~~v~~~~~~i~~id~~L~~~~~~~a~~ye~~l~~~v----~~~s~p~FD 144 (252)
T KOG3147|consen 70 SKWHIFFVDERVVPLD-DPDSNYGLAKRHFLSKVPIPHYNIYPIDESLIADAEEAADLYEKELKALV----ANDSFPVFD 144 (252)
T ss_pred cceEEEEEeccccCCC-CCcccHHHHHHhhhhhCCCCcCcEEECChhhccCHHHHHHHHHHHHHHHh----ccCCCccee
Confidence 6677888888887766 333221110 12222222222234667776764 112233444444333 33 2469
Q ss_pred EEEEecCCCCCCCC
Q 041063 311 AVVLQCGADSLSGD 324 (490)
Q Consensus 311 lIvvsaG~Da~~gD 324 (490)
++++-||-|+|.--
T Consensus 145 L~LLG~GpDGHtaS 158 (252)
T KOG3147|consen 145 LLLLGMGPDGHTAS 158 (252)
T ss_pred EEEeccCCCCCeee
Confidence 99999999999764
No 54
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=37.44 E-value=77 Score=32.14 Aligned_cols=94 Identities=23% Similarity=0.302 Sum_probs=48.7
Q ss_pred HHHhcCCcEEEEEcccCCCchhhhccccCCCeEEEeccCcCCCCCCCCCCCccCCCCCcceeecccCCCCCChhHHHHHH
Q 041063 217 ELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLF 296 (490)
Q Consensus 217 ~ll~~~~RVliVD~DvHHGdGtqe~Fy~d~~VltiSiH~~g~ffPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~yl~~f 296 (490)
.+....+||++||.|+=-|| ...+|--++.-.+ +|.+ --+.-.++|+=...+ ...+.+ ||.+.+-+++..+.
T Consensus 27 ~~~~~~k~V~~iDaD~g~~n-L~~~~g~~~~~~~--l~dv---L~~~~~~~Di~~~~~-~~gl~v-ipg~~~~~~~~~~~ 98 (262)
T COG0455 27 LAALGGKVVLLIDADLGLGN-LSLLLGVESKPTT--LHDV---LAGEASIEDIIYETP-QDGLYV-LPGGSGLEDLAKLD 98 (262)
T ss_pred HHhhCCCeEEEEecCCCCCc-HHHHhCCCCCccc--HHHH---HhCCCCHhHeeeecC-cCCEEE-eeCCCChHHHhhcC
Confidence 34455688899999998887 2223333332222 4433 111222233221111 011222 46667766765544
Q ss_pred ----HHHHHHHHHHhCCCEEEEecCCCC
Q 041063 297 ----RPIIQKVMEVYQPDAVVLQCGADS 320 (490)
Q Consensus 297 ----~~ii~pv~~~F~PdlIvvsaG~Da 320 (490)
+.++..+.+.+ |+||+-||.-.
T Consensus 99 ~~~~~~~~~~l~~~~--D~iliD~~aGl 124 (262)
T COG0455 99 PEDLEDVIKELEELY--DYILIDTGAGL 124 (262)
T ss_pred HHHHHHHHHHHHhcC--CEEEEeCCCCc
Confidence 34555554444 99999999643
No 55
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=35.79 E-value=1.4e+02 Score=32.24 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhCCCEEEE-ecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCCCch
Q 041063 295 LFRPIIQKVMEVYQPDAVVL-QCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRN 362 (490)
Q Consensus 295 ~f~~ii~pv~~~F~PdlIvv-saG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~ 362 (490)
-++..|..+.++|+|++|+| ++......||- +..+++.++..+.|++.+--.||.-..
T Consensus 73 kL~~~I~~~~~~~~p~~I~V~ttC~~~~IGdD----------i~~v~~~~~~~~~~vi~v~t~gf~g~~ 131 (427)
T cd01971 73 RLRELIKSTLSIIDADLFVVLTGCIAEIIGDD----------VGAVVSEFQEGGAPIVYLETGGFKGNN 131 (427)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCcHHHhhcC----------HHHHHHHhhhcCCCEEEEECCCcCccc
Confidence 34455667788899996655 45556666663 233555556668899999888898744
No 56
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=35.15 E-value=1.2e+02 Score=29.12 Aligned_cols=59 Identities=22% Similarity=0.439 Sum_probs=42.7
Q ss_pred eeecccCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEc
Q 041063 277 YALNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLG 354 (490)
Q Consensus 277 ~~vNVPL~~G~~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~ll 354 (490)
|.||+ +.+..+.-+.|..+++. -|+||| |-.|-|.|..+.|.+.++.+...+.|+++++
T Consensus 79 Y~V~v--------~~le~i~~~al~rA~~~--aDvIII---------DEIGpMElks~~f~~~ve~vl~~~kpliatl 137 (179)
T COG1618 79 YGVNV--------EGLEEIAIPALRRALEE--ADVIII---------DEIGPMELKSKKFREAVEEVLKSGKPLIATL 137 (179)
T ss_pred EEeeH--------HHHHHHhHHHHHHHhhc--CCEEEE---------ecccchhhccHHHHHHHHHHhcCCCcEEEEE
Confidence 67876 22333444444444332 477776 8899999999999999999999999988875
No 57
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=34.11 E-value=1.4e+02 Score=29.42 Aligned_cols=52 Identities=21% Similarity=0.274 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcC
Q 041063 295 LFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGG 355 (490)
Q Consensus 295 ~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lle 355 (490)
+++.++. .+++-+||+||+. || +..+....+.+..+++.+..++.|++++.|
T Consensus 19 ~le~l~~-~~~~~~~D~vv~~-------GD-l~~~g~~~~~~~~~l~~l~~l~~pv~~V~G 70 (224)
T cd07388 19 ALEKLVG-LAPETGADAIVLI-------GN-LLPKAAKSEDYAAFFRILGEAHLPTFYVPG 70 (224)
T ss_pred HHHHHHH-HHhhcCCCEEEEC-------CC-CCCCCCCHHHHHHHHHHHHhcCCceEEEcC
Confidence 4444443 4556789988753 45 233333566777888888888899988863
No 58
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=33.87 E-value=1.9e+02 Score=30.78 Aligned_cols=54 Identities=13% Similarity=0.290 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecC-CCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcC-CCCC
Q 041063 295 LFRPIIQKVMEVYQPDAVVLQCG-ADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGG-GGYT 359 (490)
Q Consensus 295 ~f~~ii~pv~~~F~PdlIvvsaG-~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lle-GGY~ 359 (490)
.+++.|..+.+.|+|++|+|..+ .-...||-+ ..+++.. ..+.|++.+=- ||+.
T Consensus 62 KL~eaI~ea~e~y~P~lI~VvTTCvseIIGDDI----------eaVvkE~-~~giPVI~V~t~GGfG 117 (352)
T TIGR03282 62 KLVKVIRYAEEKFKPELIGVVGTCASMIIGEDL----------KEAVDEA-DVDAEVIAVEVHAGFG 117 (352)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCchhhccCCH----------HHHHHHh-CCCCCEEEEECCCCCc
Confidence 45566677889999998776654 344455532 2333333 45889999955 8883
No 59
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=33.80 E-value=1.4e+02 Score=28.07 Aligned_cols=46 Identities=11% Similarity=0.206 Sum_probs=28.9
Q ss_pred HHHHHhCCCEEEEecCCCCCCCCCCCCcccch----hhHHHHHHHHHhcCCCEEEE
Q 041063 302 KVMEVYQPDAVVLQCGADSLSGDRLGCFNLSV----KGHADCLRFLRSFNVPLMVL 353 (490)
Q Consensus 302 pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~----~g~~~~~~~l~~~~~pvl~l 353 (490)
..+..++||+|||..|..=.. . .++. +.+..+++.++..+..++++
T Consensus 65 ~~l~~~~pd~Vii~~GtND~~----~--~~~~~~~~~~l~~li~~~~~~~~~~ill 114 (191)
T PRK10528 65 ALLKQHQPRWVLVELGGNDGL----R--GFPPQQTEQTLRQIIQDVKAANAQPLLM 114 (191)
T ss_pred HHHHhcCCCEEEEEeccCcCc----c--CCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 344568999999999975432 2 2344 44455677777665555444
No 60
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=33.78 E-value=3.3e+02 Score=31.60 Aligned_cols=18 Identities=28% Similarity=0.676 Sum_probs=14.7
Q ss_pred hcCCcEEEEEcccCCCch
Q 041063 220 KVHRRVLYVDIDVHHGDG 237 (490)
Q Consensus 220 ~~~~RVliVD~DvHHGdG 237 (490)
...+||++||.|.+.+.-
T Consensus 558 ~~G~rVLlID~D~r~~~l 575 (726)
T PRK09841 558 QSDQKVLFIDADLRRGYS 575 (726)
T ss_pred hCCCeEEEEeCCCCCCcH
Confidence 356899999999998753
No 61
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=33.74 E-value=1.5e+02 Score=32.05 Aligned_cols=49 Identities=24% Similarity=0.272 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHh
Q 041063 289 DESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRS 345 (490)
Q Consensus 289 D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~ 345 (490)
.++...+|++++. ++.+.+||+||++ ||-.-.-.-|.+...++.+.|++
T Consensus 24 ~~D~~~~f~eil~-~a~~~~vD~VLia-------GDLFd~~~Ps~~~~~~~~~~lr~ 72 (405)
T TIGR00583 24 GDDSWNTFEEVLQ-IAKEQDVDMILLG-------GDLFHENKPSRKSLYQVLRSLRL 72 (405)
T ss_pred hhhHHHHHHHHHH-HHHHcCCCEEEEC-------CccCCCCCCCHHHHHHHHHHHHH
Confidence 3556778988875 5578899999974 55444445566667777776664
No 62
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine a
Probab=33.73 E-value=54 Score=33.52 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=33.1
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCCCchh
Q 041063 300 IQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNV 363 (490)
Q Consensus 300 i~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~v 363 (490)
+...++++..++.||+.| ||..+-+-..-+..+.+.+ .=++++||++...|+
T Consensus 105 i~~~~~~~~~evtiva~G-------PLTNlA~al~~~P~~~~~i-----k~iviMGG~~~~GN~ 156 (302)
T cd02651 105 IIDTLRASPEPITLVATG-------PLTNIALLLRKYPELAERI-----KEIVLMGGALGRGNI 156 (302)
T ss_pred HHHHHHhCCCCEEEEEcC-------chHHHHHHHHHChhhHhhc-----CEEEEecCCcCCCCC
Confidence 335667788899999999 8876655443333443333 347777777754444
No 63
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=33.21 E-value=1.2e+02 Score=26.14 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=33.4
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHh--cCCCEEEEcCC
Q 041063 301 QKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRS--FNVPLMVLGGG 356 (490)
Q Consensus 301 ~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~--~~~pvl~lleG 356 (490)
...+..++||+||++.|..=....+........+.+.++++.+++ .+.+++++.--
T Consensus 58 ~~~~~~~~~d~vil~~G~ND~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vv~~~~~ 115 (187)
T cd00229 58 RLALLKDKPDLVIIELGTNDLGRGGDTSIDEFKANLEELLDALRERAPGAKVILITPP 115 (187)
T ss_pred hhhhccCCCCEEEEEecccccccccccCHHHHHHHHHHHHHHHHHHCCCCcEEEEeCC
Confidence 345678999999999987533322111223344455667777764 35666666443
No 64
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=33.08 E-value=1.7e+02 Score=32.43 Aligned_cols=59 Identities=12% Similarity=0.136 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCC-CCCCCCCCCcccchhhHHHHHHHHH-hcCCCEEEEcCCCCCCchh
Q 041063 295 LFRPIIQKVMEVYQPDAVVLQCGAD-SLSGDRLGCFNLSVKGHADCLRFLR-SFNVPLMVLGGGGYTIRNV 363 (490)
Q Consensus 295 ~f~~ii~pv~~~F~PdlIvvsaG~D-a~~gDpLG~~~Lt~~g~~~~~~~l~-~~~~pvl~lleGGY~~~~v 363 (490)
.+...|..+.++|+|++|+|..++= ...|| +...+++.++ ..+.||+.+--.||.-...
T Consensus 72 kL~~~I~~~~~~~~P~~I~V~tTC~~eiIGD----------Di~~v~~~~~~~~~~pVi~v~t~~f~g~~~ 132 (513)
T CHL00076 72 KVVDNITRKDKEERPDLIVLTPTCTSSILQE----------DLQNFVDRASIESDSDVILADVNHYRVNEL 132 (513)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCchhhhhc----------CHHHHHHHhhcccCCCEEEeCCCCCcccHH
Confidence 4455566788999999999987632 12233 2334555554 3588999999999996554
No 65
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=32.49 E-value=1.4e+02 Score=31.99 Aligned_cols=57 Identities=21% Similarity=0.254 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecC-CCCCCCCCCCCcccchhhHHHHHHHHH-hcCCCEEEEcCCCCCCc
Q 041063 295 LFRPIIQKVMEVYQPDAVVLQCG-ADSLSGDRLGCFNLSVKGHADCLRFLR-SFNVPLMVLGGGGYTIR 361 (490)
Q Consensus 295 ~f~~ii~pv~~~F~PdlIvvsaG-~Da~~gDpLG~~~Lt~~g~~~~~~~l~-~~~~pvl~lleGGY~~~ 361 (490)
-++..|..+.++|+|++|+|... .....||.+ ..+++.++ ..+.|++.+--.||.-.
T Consensus 72 kL~~~I~~~~~~~~p~~I~v~~tC~~~iIGdDi----------~~v~~~~~~~~~~~vi~v~t~gf~g~ 130 (430)
T cd01981 72 KVVENITRKDKEEKPDLIVLTPTCTSSILQEDL----------QNFVRAAGLSSKSPVLPLDVNHYRVN 130 (430)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHhhCH----------HHHHHHhhhccCCCeEEecCCCccch
Confidence 34455666778899998777665 666777643 23444443 35889999988999864
No 66
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=32.37 E-value=3.1e+02 Score=29.91 Aligned_cols=69 Identities=12% Similarity=0.148 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHh-CCCEEEEecCC-CCCCCCCCCCcccchhhHHHHHHHHH--------hcCCCEEEEcCCCCCCchhHH
Q 041063 296 FRPIIQKVMEVY-QPDAVVLQCGA-DSLSGDRLGCFNLSVKGHADCLRFLR--------SFNVPLMVLGGGGYTIRNVAR 365 (490)
Q Consensus 296 f~~ii~pv~~~F-~PdlIvvsaG~-Da~~gDpLG~~~Lt~~g~~~~~~~l~--------~~~~pvl~lleGGY~~~~var 365 (490)
+++.|..+.+.| +|++|+|..+. =...||-+ ..+++.++ ..+.|++.+-.+||.- +...
T Consensus 74 L~~~I~~~~~~~~~p~~I~V~tTC~~eiIGDDi----------~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~G-s~~~ 142 (454)
T cd01973 74 VEEGVLVLARRYPDLRVIPIITTCSTEIIGDDI----------EGVIRKLNEALKEEFPDREVHLIPVHTPSFKG-SMVT 142 (454)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCchHhhhccCH----------HHHHHHHHhhhhhccCCCCCeEEEeeCCCcCC-CHHH
Confidence 445566778889 69987666553 45555532 22343332 1268999999999985 4445
Q ss_pred HHHHHHHHHh
Q 041063 366 CWCYETAVAV 375 (490)
Q Consensus 366 ~w~~~t~~ll 375 (490)
.|...+..++
T Consensus 143 G~~~a~~ali 152 (454)
T cd01973 143 GYDEAVRSVV 152 (454)
T ss_pred HHHHHHHHHH
Confidence 5544443333
No 67
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=32.06 E-value=1.9e+02 Score=30.50 Aligned_cols=66 Identities=14% Similarity=0.248 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhCCCEEEE-ecCCCCCCCCCCCCcccchhhHHHHHHHHH-hcCCCEEEEcCCCCCCchhHHHHHHH
Q 041063 295 LFRPIIQKVMEVYQPDAVVL-QCGADSLSGDRLGCFNLSVKGHADCLRFLR-SFNVPLMVLGGGGYTIRNVARCWCYE 370 (490)
Q Consensus 295 ~f~~ii~pv~~~F~PdlIvv-saG~Da~~gDpLG~~~Lt~~g~~~~~~~l~-~~~~pvl~lleGGY~~~~var~w~~~ 370 (490)
.+++.|..+.+.|+|++|+| ++......||- +..+++.++ ..+.|++.+--.||.-.+....|...
T Consensus 74 ~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdD----------i~~v~~~~~~~~~~~vi~v~t~gf~g~~~~~G~~~a 141 (406)
T cd01967 74 KLKKAIKEAYERFPPKAIFVYSTCPTGLIGDD----------IEAVAKEASKELGIPVIPVNCEGFRGVSQSLGHHIA 141 (406)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCchhhhccC----------HHHHHHHHHHhhCCCEEEEeCCCeeCCcccHHHHHH
Confidence 55566777888999996655 44455566653 233555554 35789999988888764444444433
No 68
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=31.54 E-value=2.4e+02 Score=26.79 Aligned_cols=88 Identities=26% Similarity=0.366 Sum_probs=53.1
Q ss_pred cEEEEEcccCCCchhhhccccCCCeEEEeccCcCCCCCCCCCCCccCCCCCcceeecccCCCCCChhHHHHHHHHHHHHH
Q 041063 224 RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPIIQKV 303 (490)
Q Consensus 224 RVliVD~DvHHGdGtqe~Fy~d~~VltiSiH~~g~ffPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~yl~~f~~ii~pv 303 (490)
|+|.+||-+.-..|..+. ..+.|+.||++... |. ...+. ..+.+..+.+..|-. .
T Consensus 4 ~~l~fDIEt~~~~gfp~~--~~d~Ii~Is~~~~~------g~----------~~~~~---~~~~~E~~lL~~F~~----~ 58 (188)
T cd05781 4 KTLAFDIEVYSKYGTPNP--RRDPIIVISLATSN------GD----------VEFIL---AEGLDDRKIIREFVK----Y 58 (188)
T ss_pred eEEEEEEEecCCCCCCCC--CCCCEEEEEEEeCC------CC----------EEEEE---ecCCCHHHHHHHHHH----H
Confidence 899999999855553222 34689999986531 11 01111 123556677777765 4
Q ss_pred HHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCE
Q 041063 304 MEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPL 350 (490)
Q Consensus 304 ~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pv 350 (490)
+.+++||+|+ |+.+..-| ..-+.+.++.+++++
T Consensus 59 i~~~dPd~i~---gyN~~~FD-----------lpyl~~Ra~~~gi~~ 91 (188)
T cd05781 59 VKEYDPDIIV---GYNSNAFD-----------WPYLVERARVLGVKL 91 (188)
T ss_pred HHHcCCCEEE---ecCCCcCc-----------HHHHHHHHHHhCCCc
Confidence 5789999987 55444444 344666666667654
No 69
>PLN02512 acetylglutamate kinase
Probab=31.43 E-value=1.3e+02 Score=31.15 Aligned_cols=66 Identities=18% Similarity=0.327 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCCCc
Q 041063 289 DESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIR 361 (490)
Q Consensus 289 D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~ 361 (490)
.-.|...|++.. |-+..|+=..+||=.|-++..... + .+.+.+-+..++..+.++|+|.|||....
T Consensus 28 ~~~~~~~~r~~~-pyi~~~~~~tiVIKlGGs~i~d~~-----~-~~~~~~di~~l~~~g~~iVlVHGgG~~i~ 93 (309)
T PLN02512 28 NLSRVDILSEAL-PFIQRFRGKTVVVKYGGAAMKDPE-----L-KAGVIRDLVLLSCVGLRPVLVHGGGPEIN 93 (309)
T ss_pred hHHHHHHHHHHh-HHHHHHCCCeEEEEECCeeccChh-----H-HHHHHHHHHHHHHCCCCEEEEECCcHHHH
Confidence 347888898875 889999999999999876654332 1 12222333356677888999989988643
No 70
>CHL00175 minD septum-site determining protein; Validated
Probab=30.02 E-value=55 Score=32.66 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=15.9
Q ss_pred hcCCcEEEEEcccCCCchh
Q 041063 220 KVHRRVLYVDIDVHHGDGV 238 (490)
Q Consensus 220 ~~~~RVliVD~DvHHGdGt 238 (490)
+...||++||.|.++||-.
T Consensus 42 ~~g~~vlliD~D~~~~~l~ 60 (281)
T CHL00175 42 RLGYRVALIDADIGLRNLD 60 (281)
T ss_pred hCCCeEEEEeCCCCCCChh
Confidence 4568999999999998844
No 71
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=29.68 E-value=1.5e+02 Score=27.57 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=26.3
Q ss_pred CCCEEEEecCCCCCCCCCCCCcccchhhH----HHHHHHHHhcCCCEEEE
Q 041063 308 QPDAVVLQCGADSLSGDRLGCFNLSVKGH----ADCLRFLRSFNVPLMVL 353 (490)
Q Consensus 308 ~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~----~~~~~~l~~~~~pvl~l 353 (490)
+||+|||+.|..=..... .....+.+-| .++++.+++.+.+++++
T Consensus 65 ~pdlVii~~G~ND~~~~~-~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~ 113 (198)
T cd01821 65 PGDYVLIQFGHNDQKPKD-PEYTEPYTTYKEYLRRYIAEARAKGATPILV 113 (198)
T ss_pred CCCEEEEECCCCCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 799999999975443321 0012334444 45666677766665554
No 72
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=29.57 E-value=1.9e+02 Score=25.63 Aligned_cols=42 Identities=26% Similarity=0.277 Sum_probs=32.3
Q ss_pred HHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCCC
Q 041063 304 MEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTI 360 (490)
Q Consensus 304 ~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~ 360 (490)
+...++|.||+.+| |+ +|...++.+++.+.++++++-.+...
T Consensus 95 ~~~~~~d~ivLvSg-D~--------------Df~~~i~~lr~~G~~V~v~~~~~~~s 136 (149)
T cd06167 95 AYKRRIDTIVLVSG-DS--------------DFVPLVERLRELGKRVIVVGFEAKTS 136 (149)
T ss_pred hhhcCCCEEEEEEC-Cc--------------cHHHHHHHHHHcCCEEEEEccCccCh
Confidence 34448999999998 54 56678999999999999987764443
No 73
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=29.37 E-value=2.3e+02 Score=30.40 Aligned_cols=69 Identities=13% Similarity=0.218 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhCCCEEE-EecCCCCCCCCCCCCcccchhhHHHHHHHHHh-----cCCCEEEEcCCCCCCchhHHHHH
Q 041063 295 LFRPIIQKVMEVYQPDAVV-LQCGADSLSGDRLGCFNLSVKGHADCLRFLRS-----FNVPLMVLGGGGYTIRNVARCWC 368 (490)
Q Consensus 295 ~f~~ii~pv~~~F~PdlIv-vsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~-----~~~pvl~lleGGY~~~~var~w~ 368 (490)
-+.+.|..+.+.|+|++|+ +++......||- +..+++.++. .+.|++.+--.||.- +....|.
T Consensus 68 ~L~~~i~~~~~~~~p~~I~v~~tC~~~liGdD----------i~~v~~~~~~~~~~~~~~~vi~v~tpgf~g-~~~~G~~ 136 (428)
T cd01965 68 NLIEALKNLLSRYKPDVIGVLTTCLTETIGDD----------VAGFIKEFRAEGPEPADFPVVYASTPSFKG-SHETGYD 136 (428)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcchhhcCCC----------HHHHHHHHHhhccCCCCCeEEEeeCCCCCC-cHHHHHH
Confidence 3445566777889999654 455556666664 2335555553 578888888888884 3334444
Q ss_pred HHHHHH
Q 041063 369 YETAVA 374 (490)
Q Consensus 369 ~~t~~l 374 (490)
.....+
T Consensus 137 ~a~~al 142 (428)
T cd01965 137 NAVKAI 142 (428)
T ss_pred HHHHHH
Confidence 433333
No 74
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=29.08 E-value=2.7e+02 Score=30.02 Aligned_cols=70 Identities=14% Similarity=0.288 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC-CCCCCCCCCCcccchhhHHHHHHHHHhc-----CCCEEEEcCCCCCCchhHHHHH
Q 041063 295 LFRPIIQKVMEVYQPDAVVLQCGA-DSLSGDRLGCFNLSVKGHADCLRFLRSF-----NVPLMVLGGGGYTIRNVARCWC 368 (490)
Q Consensus 295 ~f~~ii~pv~~~F~PdlIvvsaG~-Da~~gDpLG~~~Lt~~g~~~~~~~l~~~-----~~pvl~lleGGY~~~~var~w~ 368 (490)
-+++.|..+.++|+|++|+|..+. =...||- ...+++.++.- +.|++.+--+||.-. ....|.
T Consensus 68 ~L~~~i~~~~~~~~p~~I~V~ttc~~eiIGdD----------i~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~-~~~G~~ 136 (417)
T cd01966 68 NLEEALDTLAERAKPKVIGLLSTGLTETRGED----------IAGALKQFRAEHPELADVPVVYVSTPDFEGS-LEDGWA 136 (417)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcccccccC----------HHHHHHHHHhhccccCCCeEEEecCCCCCCc-HHHHHH
Confidence 344555667788999977776553 2233332 23344444432 789999999999863 455555
Q ss_pred HHHHHHh
Q 041063 369 YETAVAV 375 (490)
Q Consensus 369 ~~t~~ll 375 (490)
.....++
T Consensus 137 ~a~~al~ 143 (417)
T cd01966 137 AAVEAII 143 (417)
T ss_pred HHHHHHH
Confidence 5444444
No 75
>PRK10818 cell division inhibitor MinD; Provisional
Probab=28.82 E-value=58 Score=32.18 Aligned_cols=18 Identities=11% Similarity=0.272 Sum_probs=14.9
Q ss_pred hcCCcEEEEEcccCCCch
Q 041063 220 KVHRRVLYVDIDVHHGDG 237 (490)
Q Consensus 220 ~~~~RVliVD~DvHHGdG 237 (490)
+..+||++||+|.+.||-
T Consensus 29 ~~g~~vllvD~D~~~~~~ 46 (270)
T PRK10818 29 QKGKKTVVIDFDIGLRNL 46 (270)
T ss_pred HCCCeEEEEECCCCCCCh
Confidence 446899999999988873
No 76
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=28.34 E-value=67 Score=27.39 Aligned_cols=15 Identities=60% Similarity=1.004 Sum_probs=14.1
Q ss_pred CCcEEEEEcccCCCc
Q 041063 222 HRRVLYVDIDVHHGD 236 (490)
Q Consensus 222 ~~RVliVD~DvHHGd 236 (490)
..+|++||.|.++++
T Consensus 29 ~~~~~l~d~d~~~~~ 43 (106)
T cd03111 29 GRRVLLVDLDLQFGD 43 (106)
T ss_pred CCcEEEEECCCCCCC
Confidence 789999999999987
No 77
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=28.10 E-value=2e+02 Score=28.64 Aligned_cols=54 Identities=15% Similarity=0.203 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHH-hCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcC
Q 041063 293 RGLFRPIIQKVMEV-YQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGG 355 (490)
Q Consensus 293 l~~f~~ii~pv~~~-F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lle 355 (490)
...|+.+|..+... -+||+||++ ||=.- .-+.+.|..+.+.+..++.|+.++.|
T Consensus 39 ~~~l~~~i~~i~~~~~~~D~vvit-------GDl~~--~~~~~~~~~~~~~l~~l~~Pv~~v~G 93 (275)
T PRK11148 39 WESYQAVLEAIRAQQHEFDLIVAT-------GDLAQ--DHSSEAYQHFAEGIAPLRKPCVWLPG 93 (275)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEC-------CCCCC--CCCHHHHHHHHHHHhhcCCcEEEeCC
Confidence 44566666655443 479998764 33211 12457788888888888999887764
No 78
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=27.97 E-value=44 Score=30.78 Aligned_cols=15 Identities=27% Similarity=0.352 Sum_probs=13.1
Q ss_pred CcEEEEEcccCCCch
Q 041063 223 RRVLYVDIDVHHGDG 237 (490)
Q Consensus 223 ~RVliVD~DvHHGdG 237 (490)
+||++||.|.+.++-
T Consensus 25 ~~vlliD~D~~~~~~ 39 (179)
T cd03110 25 KNVVLADCDVDAPNL 39 (179)
T ss_pred hCcEEEECCCCCCch
Confidence 699999999998763
No 79
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=27.56 E-value=1.1e+02 Score=26.51 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCC
Q 041063 294 GLFRPIIQKVMEVYQPDAVVLQCGADS 320 (490)
Q Consensus 294 ~~f~~ii~pv~~~F~PdlIvvsaG~Da 320 (490)
..+...|..++++++|++|+.-...|.
T Consensus 86 ~~~~~~l~~~i~~~~p~~V~t~~~~~~ 112 (128)
T PF02585_consen 86 EELVRDLEDLIREFRPDVVFTPDPDDG 112 (128)
T ss_dssp HHHHHHHHHHHHHH-ESEEEEE-STTS
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 344455678889999999999888777
No 80
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=27.43 E-value=1.6e+02 Score=24.67 Aligned_cols=55 Identities=24% Similarity=0.401 Sum_probs=32.4
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHHHHhCCC-EEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcC
Q 041063 281 VPLNDGLDDESFRGLFRPIIQKVMEVYQPD-AVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGG 355 (490)
Q Consensus 281 VPL~~G~~D~~yl~~f~~ii~pv~~~F~Pd-lIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lle 355 (490)
|=+|+|++|.- +.+++ ....+ +|||..--+ ++...-.+.+.++++.++|++-+.|
T Consensus 6 iD~PPGTgD~~-l~~~~--------~~~~~g~ivVTTPq~-----------la~~dv~r~~~~~~~~~vpilGvVE 61 (81)
T PF10609_consen 6 IDLPPGTGDEH-LTLMQ--------YLPIDGAIVVTTPQE-----------LALADVRRAIDMFRKLNVPILGVVE 61 (81)
T ss_dssp EE--SCSSSHH-HHHHH--------HH--SEEEEEE-CCC-------------HHHHHHHHHHHHCTT-EEEEEEE
T ss_pred EeCCCCCCcHH-HHHHH--------hCCCCeEEEEeCCHH-----------HHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 45789998865 33333 22244 777776533 4556667788899999999997765
No 81
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=26.98 E-value=2.1e+02 Score=31.60 Aligned_cols=56 Identities=11% Similarity=0.253 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHH-hcCCCEEEEcCCCCC
Q 041063 295 LFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLR-SFNVPLMVLGGGGYT 359 (490)
Q Consensus 295 ~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~-~~~~pvl~lleGGY~ 359 (490)
-++.+|..++++|+|++|+|-.++=+ +-.....+ .+.+.+. +.++|||.+-..|+.
T Consensus 84 ~L~~~i~ei~~~~~p~~ifv~~TC~t------~iIGdDle---~va~~~~~~~gipVV~v~~~Gf~ 140 (457)
T CHL00073 84 ELKRLCLQIKKDRNPSVIVWIGTCTT------EIIKMDLE---GMAPKLEAEIGIPIVVARANGLD 140 (457)
T ss_pred HHHHHHHHHHHhCCCCEEEEEccCcH------HhhccCHH---HHHHHHHHhhCCCEEEEeCCCcc
Confidence 34566778889999999999877422 22222222 3444443 569999999999987
No 82
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=26.93 E-value=1.6e+02 Score=25.30 Aligned_cols=35 Identities=11% Similarity=0.058 Sum_probs=23.1
Q ss_pred HHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcC
Q 041063 302 KVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFN 347 (490)
Q Consensus 302 pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~ 347 (490)
..+.+.+||+|.+|+-.+. +.....++++.+++.+
T Consensus 44 ~~~~~~~pdvV~iS~~~~~-----------~~~~~~~~i~~l~~~~ 78 (119)
T cd02067 44 EAAKEEDADAIGLSGLLTT-----------HMTLMKEVIEELKEAG 78 (119)
T ss_pred HHHHHcCCCEEEEeccccc-----------cHHHHHHHHHHHHHcC
Confidence 4557899999999875222 2233456777787764
No 83
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=25.71 E-value=2e+02 Score=31.80 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=33.6
Q ss_pred HHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhc--CCCEEEEcCCCCCCchhHHHHHHHHHHHhC
Q 041063 305 EVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSF--NVPLMVLGGGGYTIRNVARCWCYETAVAVG 376 (490)
Q Consensus 305 ~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~--~~pvl~lleGGY~~~~var~w~~~t~~llg 376 (490)
++.+||+|++.-|.|+-..+. .-+..++|.+. +.|||+.| | +....+...+++
T Consensus 117 ~~~~PDIILLaGGtDGG~~e~----------~l~NA~~La~~~~~~pIIyAG----N-----~~a~~~V~~il~ 171 (463)
T TIGR01319 117 EESNLDIILFAGGTDGGEEEC----------GIHNAKMLAEHGLDCAIIVAG----N-----KDIQDEVQEIFD 171 (463)
T ss_pred hhcCCCEEEEeCCcCCCchHH----------HHHHHHHHHhcCCCCcEEEeC----C-----HHHHHHHHHHHh
Confidence 447999999999999876552 11234455544 67877774 5 334444555554
No 84
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=25.66 E-value=2.3e+02 Score=27.06 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHH-hCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcC
Q 041063 290 ESFRGLFRPIIQKVMEV-YQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGG 355 (490)
Q Consensus 290 ~~yl~~f~~ii~pv~~~-F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lle 355 (490)
......|+.++..+.+. -+||+||+. ||-... -+.+.|..+.+.+..+++|++++.|
T Consensus 21 ~~~~~~l~~~~~~i~~~~~~~d~vi~~-------GDl~~~--~~~~~~~~~~~~l~~~~~p~~~v~G 78 (240)
T cd07402 21 VDTAASLEAVLAHINALHPRPDLVLVT-------GDLTDD--GSPESYERLRELLAALPIPVYLLPG 78 (240)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCEEEEC-------ccCCCC--CCHHHHHHHHHHHhhcCCCEEEeCC
Confidence 34556677777554443 389987753 342211 1345567777778888999887753
No 85
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=25.47 E-value=2.6e+02 Score=29.83 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=21.1
Q ss_pred hcHHHHHHHHHHhcC--CcEEEEEcccCCCchhhh
Q 041063 208 VNDIVLGILELLKVH--RRVLYVDIDVHHGDGVEE 240 (490)
Q Consensus 208 ~NdvaIAa~~ll~~~--~RVliVD~DvHHGdGtqe 240 (490)
-+++..++..+.+.. .+|+ +|+=|||+-.+
T Consensus 245 ~~~i~~a~~~l~k~~l~~~vm---VD~SH~Ns~K~ 276 (353)
T PRK12755 245 AASVAACEAQLEKAGLRPRLM---IDCSHANSGKD 276 (353)
T ss_pred HHHHHHHHHHHHHcCCCCcEE---ecCCccccccc
Confidence 477888877777653 4555 48899998653
No 86
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.46 E-value=3.5e+02 Score=26.84 Aligned_cols=100 Identities=21% Similarity=0.421 Sum_probs=61.3
Q ss_pred CCcEEEEEcccCCCchhhhccccCCCeEEEeccCc-CCCCCCCCCCCcc-CCCCCcceeecccCCCCCChhHHHHHHHHH
Q 041063 222 HRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKF-GDFFPGTGHIKDV-GAGQGKFYALNVPLNDGLDDESFRGLFRPI 299 (490)
Q Consensus 222 ~~RVliVD~DvHHGdGtqe~Fy~d~~VltiSiH~~-g~ffPgtG~~~e~-G~g~G~g~~vNVPL~~G~~D~~yl~~f~~i 299 (490)
+++|+|+-. .-.|+-|.++...+.+|..+.+|-+ ..|-|+.=...+. -.-.|+ +.+=|-|. |++. +
T Consensus 45 ~~~vli~G~-YltG~~~a~~Ls~~~~vtv~Di~p~~r~~lp~~v~Fr~~~~~~~G~-~DlivDlT-GlGG---------~ 112 (254)
T COG4017 45 FKEVLIFGV-YLTGNYTAQMLSKADKVTVVDIHPFMRGFLPNNVKFRNLLKFIRGE-VDLIVDLT-GLGG---------I 112 (254)
T ss_pred cceEEEEEe-eehhHHHHHHhcccceEEEecCCHHHHhcCCCCccHhhhcCCCCCc-eeEEEecc-ccCC---------C
Confidence 589999875 3459999999999999999999988 5566753111110 001121 23333332 2221 1
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCCCCC-CcccchhhHHHHHH
Q 041063 300 IQKVMEVYQPDAVVLQCGADSLSGDRLG-CFNLSVKGHADCLR 341 (490)
Q Consensus 300 i~pv~~~F~PdlIvvsaG~Da~~gDpLG-~~~Lt~~g~~~~~~ 341 (490)
-...+..|+|.+.|| .||-| .+..++.+|-.-.+
T Consensus 113 ~Pe~L~~fnp~vfiV--------EdP~gn~~D~~I~eyn~T~e 147 (254)
T COG4017 113 EPEFLAKFNPKVFIV--------EDPKGNVFDVDIYEYNNTYE 147 (254)
T ss_pred CHHHHhccCCceEEE--------ECCCCCCCccchhhcCCHHH
Confidence 123457899999887 57877 45667776654333
No 87
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=25.00 E-value=1.5e+02 Score=28.44 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=26.7
Q ss_pred HHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCC
Q 041063 302 KVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNV 348 (490)
Q Consensus 302 pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~ 348 (490)
..+++.+||+|.+|+-... +.....++++.+++.+.
T Consensus 129 ~~~~~~~pd~v~lS~~~~~-----------~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 129 EKVKKEKPLMLTGSALMTT-----------TMYGQKDINDKLKEEGY 164 (197)
T ss_pred HHHHHcCCCEEEEcccccc-----------CHHHHHHHHHHHHHcCC
Confidence 5668899999999986433 34456778888888754
No 88
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=24.53 E-value=1.7e+02 Score=27.09 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCEEEEe
Q 041063 289 DESFRGLFRPIIQKVMEVYQPDAVVLQ 315 (490)
Q Consensus 289 D~~yl~~f~~ii~pv~~~F~PdlIvvs 315 (490)
|......+...+..++.+++|++|+|+
T Consensus 44 ~~~~~~~~~~~l~~~i~~~kP~vI~v~ 70 (150)
T PF14639_consen 44 DRERKEEDMERLKKFIEKHKPDVIAVG 70 (150)
T ss_dssp -SS-SHHHHHHHHHHHHHH--SEEEE-
T ss_pred chHHHHHHHHHHHHHHHHcCCeEEEEc
Confidence 434444444555677789999999993
No 89
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=24.34 E-value=1.4e+02 Score=32.75 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=25.4
Q ss_pred HHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCC
Q 041063 302 KVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGG 357 (490)
Q Consensus 302 pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGG 357 (490)
..+.+++||+|.+++ +..+.....++.+.+++..-.+.+|+||.
T Consensus 57 ~~l~~~~pdvVgis~------------~t~~~~~a~~~~~~~k~~~P~~~iV~GG~ 100 (497)
T TIGR02026 57 ERLRAHCPDLVLITA------------ITPAIYIACETLKFARERLPNAIIVLGGI 100 (497)
T ss_pred HHHHhcCcCEEEEec------------CcccHHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 455779999999974 11223333456677776533344444444
No 90
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=24.05 E-value=19 Score=28.89 Aligned_cols=51 Identities=24% Similarity=0.524 Sum_probs=40.5
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhH----HHHHHHHHhcCC
Q 041063 298 PIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGH----ADCLRFLRSFNV 348 (490)
Q Consensus 298 ~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~----~~~~~~l~~~~~ 348 (490)
++|..+.++|+-++=|++++.|...+.|+|.|-+...|- .+...+|++.++
T Consensus 17 piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~v 71 (76)
T PF09383_consen 17 PIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQGV 71 (76)
T ss_dssp CHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTTE
T ss_pred hHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCCC
Confidence 578888999999999999999999999999988877554 456667766553
No 91
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=23.77 E-value=3.3e+02 Score=29.11 Aligned_cols=56 Identities=13% Similarity=0.239 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC-CCCCCCCCCCcccchhhHHHHHHHHH-hcCCCEEEEcCCCCCC
Q 041063 295 LFRPIIQKVMEVYQPDAVVLQCGA-DSLSGDRLGCFNLSVKGHADCLRFLR-SFNVPLMVLGGGGYTI 360 (490)
Q Consensus 295 ~f~~ii~pv~~~F~PdlIvvsaG~-Da~~gDpLG~~~Lt~~g~~~~~~~l~-~~~~pvl~lleGGY~~ 360 (490)
-++..|..+++.|+|++|+|.... -...||- ...+++.++ ..+.|++.+--.||.-
T Consensus 71 ~L~~aI~~i~~~~~P~~I~V~tTC~se~IGDD----------i~~v~~~~~~~~~~pVi~v~tpgf~g 128 (407)
T TIGR01279 71 ELDRVVEQIKRDRNPSVIFLLSSCTPEVIKMD----------LEGLAERLSTNFGVPVLFAPASGLDY 128 (407)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCchHHHHHhh----------HHHHHHHHHHhhCCCEEEeeCCCccc
Confidence 455667778899999988876542 3334442 223344343 2467777777777753
No 92
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=23.62 E-value=3.1e+02 Score=29.16 Aligned_cols=70 Identities=14% Similarity=0.160 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEec-CCCCCCCCCCCCcccchhhHHHHHHHHH-hcCCCEEEEcCCCCCCchhHHHHHHHHH
Q 041063 295 LFRPIIQKVMEVYQPDAVVLQC-GADSLSGDRLGCFNLSVKGHADCLRFLR-SFNVPLMVLGGGGYTIRNVARCWCYETA 372 (490)
Q Consensus 295 ~f~~ii~pv~~~F~PdlIvvsa-G~Da~~gDpLG~~~Lt~~g~~~~~~~l~-~~~~pvl~lleGGY~~~~var~w~~~t~ 372 (490)
-+++.|..+.+.|+|++|+|.. ..-...||-+ ..+++.++ +.+.|++.+-..||.- +....|.....
T Consensus 74 ~L~~aI~ei~~~~~P~~I~V~sTCv~e~IGDDi----------~~v~~~~~~~~~~pvi~v~t~gf~g-~~~~G~~~~~~ 142 (396)
T cd01979 74 ELDRVVTQIKRDRNPSVIFLIGSCTTEVIKMDL----------EGAAPRLSAEIGVPILVASASGLDY-TFTQGEDTVLA 142 (396)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCHHHHHhcCH----------HHHHHHHhhcCCCcEEEeeCCCccc-cHHHHHHHHHH
Confidence 3445677788999999776654 4455555532 23444443 3477888887778763 33344443333
Q ss_pred HHh
Q 041063 373 VAV 375 (490)
Q Consensus 373 ~ll 375 (490)
.++
T Consensus 143 alv 145 (396)
T cd01979 143 ALV 145 (396)
T ss_pred HHh
Confidence 343
No 93
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=23.53 E-value=77 Score=31.55 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=14.3
Q ss_pred hcCCcEEEEEcccCCCc
Q 041063 220 KVHRRVLYVDIDVHHGD 236 (490)
Q Consensus 220 ~~~~RVliVD~DvHHGd 236 (490)
+..+||++||.|.+..+
T Consensus 27 ~~G~rVllvD~Dpq~~~ 43 (273)
T PRK13232 27 TMGNKILLVGCDPKADS 43 (273)
T ss_pred hhCCCeEEEeccccccc
Confidence 45689999999999765
No 94
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=23.52 E-value=2.7e+02 Score=29.25 Aligned_cols=55 Identities=22% Similarity=0.497 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecC-CCCCCCCCCCCcccchhhHHHHHHHHHh-cCCCEEEEcCCCCC
Q 041063 295 LFRPIIQKVMEVYQPDAVVLQCG-ADSLSGDRLGCFNLSVKGHADCLRFLRS-FNVPLMVLGGGGYT 359 (490)
Q Consensus 295 ~f~~ii~pv~~~F~PdlIvvsaG-~Da~~gDpLG~~~Lt~~g~~~~~~~l~~-~~~pvl~lleGGY~ 359 (490)
-+++.|..+.++++|++|+|-.. .....|| ++..+.+.++. .+.|++.+--.||.
T Consensus 61 kL~~~i~~~~~~~~P~~i~v~~sC~~~iIGd----------D~~~v~~~~~~~~~~~vi~v~~~gf~ 117 (398)
T PF00148_consen 61 KLREAIKEIAEKYKPKAIFVVTSCVPEIIGD----------DIEAVARELQEEYGIPVIPVHTPGFS 117 (398)
T ss_dssp HHHHHHHHHHHHHSTSEEEEEE-HHHHHTTT----------THHHHHHHHHHHHSSEEEEEE--TTS
T ss_pred hHHHHHHHHHhcCCCcEEEEECCCCHHHhCC----------CHHHHHHHhhcccCCcEEEEECCCcc
Confidence 44566667788999998877543 3333443 34456666664 58899999999993
No 95
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=23.46 E-value=1.1e+02 Score=31.47 Aligned_cols=65 Identities=17% Similarity=0.273 Sum_probs=48.9
Q ss_pred HHHHHHHhCCCEEEEecCC---CCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEE-------cCC--CCCCchhH
Q 041063 300 IQKVMEVYQPDAVVLQCGA---DSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVL-------GGG--GYTIRNVA 364 (490)
Q Consensus 300 i~pv~~~F~PdlIvvsaG~---Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~l-------leG--GY~~~~va 364 (490)
+..++.+.+||+||-.|.+ |....+|.-.|.+...|-..+.+..+..+.++|-+ |.+ .|......
T Consensus 42 v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~~~~~Y~E~D~~ 118 (281)
T COG1091 42 VLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEKGGPYKETDTP 118 (281)
T ss_pred HHHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCCCCCCCCCCCCC
Confidence 4567778899999999875 77778887788888888888888888888877532 554 38765433
No 96
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=23.39 E-value=72 Score=32.49 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=15.2
Q ss_pred HHhcCCcEEEEEcccCCCc
Q 041063 218 LLKVHRRVLYVDIDVHHGD 236 (490)
Q Consensus 218 ll~~~~RVliVD~DvHHGd 236 (490)
|.+..+|||+||.|.++.+
T Consensus 28 la~~g~kVLliD~D~q~~~ 46 (295)
T PRK13234 28 LVEMGQKILIVGCDPKADS 46 (295)
T ss_pred HHHCCCeEEEEeccccccc
Confidence 4455789999999998655
No 97
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=23.16 E-value=3.5e+02 Score=27.55 Aligned_cols=119 Identities=14% Similarity=0.123 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCCCchhHHHHHHHHH
Q 041063 293 RGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETA 372 (490)
Q Consensus 293 l~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~var~w~~~t~ 372 (490)
+.+++..+..+.++|++|+||+.+ ..--|++.||.+ ..+.|.+.++-++..|--=|..+.+-....-.-.
T Consensus 12 r~~v~~~Lp~L~~~~~~DfVIaNg------ENaa~G~Git~~----~~~~L~~~GvDviT~GNH~wdkkei~~~i~~~~~ 81 (253)
T PF13277_consen 12 RRAVKEHLPELKEEYGIDFVIANG------ENAAGGFGITPK----IAEELFKAGVDVITMGNHIWDKKEIFDFIDKEPR 81 (253)
T ss_dssp HHHHHHHHHHHGG--G-SEEEEE-------TTTTTTSS--HH----HHHHHHHHT-SEEE--TTTTSSTTHHHHHHH-SS
T ss_pred HHHHHHHHHHHHhhcCCCEEEECC------cccCCCCCCCHH----HHHHHHhcCCCEEecCcccccCcHHHHHHhcCCC
Confidence 457778888888999999999865 233467889887 4455567888888887776765544322111111
Q ss_pred HHhCCCCCCCCCCcccccccCCCcccCcC----CCCC-CCCCcHHHHHHHHHHH
Q 041063 373 VAVGVEPDNKLPYNEYYEYFGPDYTLHVE----PCNM-ENLNAHKDMEKIRNTL 421 (490)
Q Consensus 373 ~llg~~~~~~lP~~~~~~~~~p~~~l~~~----~~~~-~~~n~~~~le~i~~~~ 421 (490)
+|==...|+..|-.-|.-+-....++-|- ..-| +..|.-..++++.+++
T Consensus 82 ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~Gr~fm~~~~~PF~~~d~~l~~l 135 (253)
T PF13277_consen 82 ILRPANYPPGTPGRGYRIFEKNGKKVAVINLMGRVFMPPIDCPFRAADRLLEEL 135 (253)
T ss_dssp EE--TTS-TT-SSBSEEEEEETTEEEEEEEEE--TTS---S-HHHHHHHHHHH-
T ss_pred cEECCCCCCCCCcCcEEEEEECCEEEEEEECcccccCCCCCChHHHHHHHHHhc
Confidence 11001123333433333322233444331 1223 3337777888877765
No 98
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=23.16 E-value=3.5e+02 Score=30.07 Aligned_cols=56 Identities=23% Similarity=0.439 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhCCCE-EEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCCCc
Q 041063 295 LFRPIIQKVMEVYQPDA-VVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIR 361 (490)
Q Consensus 295 ~f~~ii~pv~~~F~Pdl-IvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~ 361 (490)
.++..|..+.+.|+|++ +|++...-...||-+. .+++.+ ..++|++.+--.||.-.
T Consensus 72 kL~~aI~~~~~~~~P~~I~V~sTC~seiIGdDi~----------~v~~~~-~~~~~Vi~v~t~gf~~~ 128 (519)
T PRK02910 72 LLKDTLRRADERFQPDLIVVGPSCTAELLQEDLG----------GLAKHA-GLPIPVLPLELNAYRVK 128 (519)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHhccCHH----------HHHHHh-CCCCCEEEEecCCcccc
Confidence 55666778888999997 5555555666666432 233322 24789999888888764
No 99
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=23.06 E-value=89 Score=30.20 Aligned_cols=19 Identities=21% Similarity=0.513 Sum_probs=15.1
Q ss_pred HHhcCCcEEEEEcccCCCc
Q 041063 218 LLKVHRRVLYVDIDVHHGD 236 (490)
Q Consensus 218 ll~~~~RVliVD~DvHHGd 236 (490)
|.+...||++||.|...||
T Consensus 26 la~~g~~vlliD~D~~~~~ 44 (261)
T TIGR01968 26 LARLGKKVVLIDADIGLRN 44 (261)
T ss_pred HHHcCCeEEEEECCCCCCC
Confidence 3345689999999998766
No 100
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.97 E-value=3.4e+02 Score=27.02 Aligned_cols=62 Identities=19% Similarity=0.343 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchh---hHHHHHHHHHhcC-CCEEEEcCCCCCCchh
Q 041063 291 SFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVK---GHADCLRFLRSFN-VPLMVLGGGGYTIRNV 363 (490)
Q Consensus 291 ~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~---g~~~~~~~l~~~~-~pvl~lleGGY~~~~v 363 (490)
+....|+.++ ..+.+.+||+||++ ||=.-..+-+.. -+.+.++.+.+.+ +|++++.| |.+..
T Consensus 23 ~~~~~l~~l~-~~~~~~~~D~lli~-------GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~G---NHD~~ 88 (253)
T TIGR00619 23 EQKAFLDDLL-EFAKAEQIDALLVA-------GDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVISG---NHDSA 88 (253)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEC-------CccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEcc---CCCCh
Confidence 3455666665 45567899998864 343322222222 2334444555555 78887754 54443
No 101
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=22.65 E-value=3.5e+02 Score=29.40 Aligned_cols=56 Identities=21% Similarity=0.366 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCCEEEE-ecCCCCCCCCCCCCcccchhhHHHHHHHHH-hcCCCEEEEcCCCCCC
Q 041063 295 LFRPIIQKVMEVYQPDAVVL-QCGADSLSGDRLGCFNLSVKGHADCLRFLR-SFNVPLMVLGGGGYTI 360 (490)
Q Consensus 295 ~f~~ii~pv~~~F~PdlIvv-saG~Da~~gDpLG~~~Lt~~g~~~~~~~l~-~~~~pvl~lleGGY~~ 360 (490)
-+.+.|..+.++|+|++|+| +.......||.+ ..+.+.++ ..+.|++.+-..||.-
T Consensus 108 kL~~~I~e~~~~~~P~~I~V~ttC~~~lIGdDi----------~~v~~e~~~~~~~~vi~v~t~gf~g 165 (456)
T TIGR01283 108 KLFHAIREIVERYHPPAVFVYSTCVPGLIGDDL----------EAVCKAAAEKTGIPVIPVDSEGFYG 165 (456)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCChHHHhcCCH----------HHHHHHHHHHhCCCEEEEECCCCcc
Confidence 34455667778899997655 445566666633 33555454 3589999998889864
No 102
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=22.43 E-value=79 Score=31.40 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=13.4
Q ss_pred cCCcEEEEEcccCCCc
Q 041063 221 VHRRVLYVDIDVHHGD 236 (490)
Q Consensus 221 ~~~RVliVD~DvHHGd 236 (490)
..+|||+||+|.++.+
T Consensus 30 ~G~rvLliD~Dpq~~~ 45 (275)
T PRK13233 30 HDKKVFIHGCDPKADS 45 (275)
T ss_pred cCCeEEEeccCcCcCh
Confidence 4789999999999654
No 103
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=21.97 E-value=8.2e+02 Score=24.62 Aligned_cols=78 Identities=13% Similarity=0.207 Sum_probs=45.9
Q ss_pred ChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHh-cCCCEEE--EcCCCCCCchhH
Q 041063 288 DDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRS-FNVPLMV--LGGGGYTIRNVA 364 (490)
Q Consensus 288 ~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~-~~~pvl~--lleGGY~~~~va 364 (490)
+=+++..+.+. +.+.-+++++++.||+-++..-+.-..+| ..+..+++ ++.||++ --.+|+.--..+
T Consensus 144 t~~e~~~Ave~----i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl------~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~ 213 (260)
T TIGR01361 144 TIEEWLYAAEY----ILSSGNGNVILCERGIRTFEKATRNTLDL------SAVPVLKKETHLPIIVDPSHAAGRRDLVIP 213 (260)
T ss_pred CHHHHHHHHHH----HHHcCCCcEEEEECCCCCCCCCCcCCcCH------HHHHHHHHhhCCCEEEcCCCCCCccchHHH
Confidence 45666666553 44566789999999997663222223444 24455555 5899888 456775533332
Q ss_pred HHHHHHHHHHhCCC
Q 041063 365 RCWCYETAVAVGVE 378 (490)
Q Consensus 365 r~w~~~t~~llg~~ 378 (490)
- ..+++.+|..
T Consensus 214 ~---~~aAva~Ga~ 224 (260)
T TIGR01361 214 L---AKAAIAAGAD 224 (260)
T ss_pred H---HHHHHHcCCC
Confidence 2 3346677754
No 104
>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent
Probab=21.96 E-value=26 Score=28.04 Aligned_cols=11 Identities=36% Similarity=0.860 Sum_probs=7.9
Q ss_pred CCCcchhcHHH
Q 041063 202 ASGFCYVNDIV 212 (490)
Q Consensus 202 a~GFC~~Ndva 212 (490)
--=|||+||--
T Consensus 15 nTKFcYyNNy~ 25 (63)
T PF02701_consen 15 NTKFCYYNNYN 25 (63)
T ss_pred CCEEEeecCCC
Confidence 34699999853
No 105
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=21.83 E-value=1.2e+02 Score=24.86 Aligned_cols=18 Identities=17% Similarity=0.444 Sum_probs=13.8
Q ss_pred HHHhcCCCEEEEcCCCCC
Q 041063 342 FLRSFNVPLMVLGGGGYT 359 (490)
Q Consensus 342 ~l~~~~~pvl~lleGGY~ 359 (490)
.++.++.+=+.++.|||.
T Consensus 91 ~l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 91 ILKKLGFKNVYILDGGFE 108 (113)
T ss_dssp HHHHTTTSSEEEETTHHH
T ss_pred HHHHcCCCCEEEecChHH
Confidence 366677767788899986
No 106
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.79 E-value=2.4e+02 Score=26.44 Aligned_cols=36 Identities=28% Similarity=0.295 Sum_probs=22.8
Q ss_pred HhCCCEEEEecCC-CCCCCCCCCCcccchhh----HHHHHHHHHhc
Q 041063 306 VYQPDAVVLQCGA-DSLSGDRLGCFNLSVKG----HADCLRFLRSF 346 (490)
Q Consensus 306 ~F~PdlIvvsaG~-Da~~gDpLG~~~Lt~~g----~~~~~~~l~~~ 346 (490)
..+||+|||..|. |.... ++.+.+- +.++++.+++.
T Consensus 77 ~~~pd~vii~lGtND~~~~-----~~~~~~~~~~~l~~lv~~i~~~ 117 (208)
T cd01839 77 HSPLDLVIIMLGTNDLKSY-----FNLSAAEIAQGLGALVDIIRTA 117 (208)
T ss_pred CCCCCEEEEeccccccccc-----cCCCHHHHHHHHHHHHHHHHhc
Confidence 3799999999998 54432 2234443 44566666654
No 107
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=21.75 E-value=3.3e+02 Score=23.00 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=61.9
Q ss_pred HHHHHHHHhcCCcEEEEEcccCCCchhhhccccCCCeEEEeccCcCCCCCCCCCCCccCCCCCcceeecccCCCCCChhH
Q 041063 212 VLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDES 291 (490)
Q Consensus 212 aIAa~~ll~~~~RVliVD~DvHHGdGtqe~Fy~d~~VltiSiH~~g~ffPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~ 291 (490)
.+.+..|.+..-.|-++|.+++..+-++.+-...+++..+|.+.. ..
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~---------------------------------~~ 64 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMT---------------------------------PN 64 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSS---------------------------------TH
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCc---------------------------------Cc
Confidence 333445555556899999999997778878788999999997421 01
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHh-cCCCEEEEcCCCCCC
Q 041063 292 FRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRS-FNVPLMVLGGGGYTI 360 (490)
Q Consensus 292 yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~-~~~pvl~lleGGY~~ 360 (490)
+ .....++ ..+++..|+.+++.-|.-+ ...+ ..+ ++. .+.-.++.+||-+.+
T Consensus 65 ~-~~~~~l~-~~~k~~~p~~~iv~GG~~~---------t~~~---~~~---l~~~~~~D~vv~GegE~~~ 117 (121)
T PF02310_consen 65 L-PEAKRLA-RAIKERNPNIPIVVGGPHA---------TADP---EEI---LREYPGIDYVVRGEGEEAF 117 (121)
T ss_dssp H-HHHHHHH-HHHHTTCTTSEEEEEESSS---------GHHH---HHH---HHHHHTSEEEEEETTSSHH
T ss_pred H-HHHHHHH-HHHHhcCCCCEEEEECCch---------hcCh---HHH---hccCcCcceecCCChHHhh
Confidence 1 1122333 3478899999998877321 1111 112 222 466788999997664
No 108
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=21.69 E-value=1.1e+02 Score=27.73 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=16.1
Q ss_pred HHhcCCcEEEEEcccCCCchh
Q 041063 218 LLKVHRRVLYVDIDVHHGDGV 238 (490)
Q Consensus 218 ll~~~~RVliVD~DvHHGdGt 238 (490)
|.+...||++||.|...|+-+
T Consensus 24 l~~~g~~vllvD~D~~~~~~~ 44 (179)
T cd02036 24 LAQLGYKVVLIDADLGLRNLD 44 (179)
T ss_pred HHhCCCeEEEEeCCCCCCCch
Confidence 345578999999999877643
No 109
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=21.59 E-value=3.2e+02 Score=25.19 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCEEEEec-------CCCCCCCCCCCC----cccchhhHHHHHHHHHhcCCCEEEEcCC
Q 041063 289 DESFRGLFRPIIQKVMEVYQPDAVVLQC-------GADSLSGDRLGC----FNLSVKGHADCLRFLRSFNVPLMVLGGG 356 (490)
Q Consensus 289 D~~yl~~f~~ii~pv~~~F~PdlIvvsa-------G~Da~~gDpLG~----~~Lt~~g~~~~~~~l~~~~~pvl~lleG 356 (490)
+...+..+...+..+-..-...+||+.. |.|...--.... ..--...+..+++.+..+..|++.+..|
T Consensus 24 ~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G 102 (195)
T cd06558 24 SLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNG 102 (195)
T ss_pred CHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 3455556666666555545566777754 333221100000 0011122334556666779999988753
No 110
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=21.58 E-value=3.4e+02 Score=29.26 Aligned_cols=70 Identities=10% Similarity=0.141 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhCCCEEEE-ecCCCCCCCCCCCCcccchhhHHHHHHHHHhc-----CCCEEEEcCCCCCCchhHHHHH
Q 041063 295 LFRPIIQKVMEVYQPDAVVL-QCGADSLSGDRLGCFNLSVKGHADCLRFLRSF-----NVPLMVLGGGGYTIRNVARCWC 368 (490)
Q Consensus 295 ~f~~ii~pv~~~F~PdlIvv-saG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~-----~~pvl~lleGGY~~~~var~w~ 368 (490)
-+++.|..+.++|+|++|+| +.......||- +..+++.++.. +.|++.+--.||.- +....|.
T Consensus 72 ~L~~ai~~~~~~~~p~~I~v~ttC~~~iiGdD----------i~~v~~~~~~~~~~~~~~~vi~v~tpgf~g-s~~~G~~ 140 (435)
T cd01974 72 NLIDGLKNAYAVYKPDMIAVSTTCMAEVIGDD----------LNAFIKNAKNKGSIPADFPVPFANTPSFVG-SHITGYD 140 (435)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHhhhhcc----------HHHHHHHHHHhccCCCCCeEEEecCCCCcc-CHHHHHH
Confidence 45556667888999997555 45555666663 23344444332 57888887778874 3334444
Q ss_pred HHHHHHh
Q 041063 369 YETAVAV 375 (490)
Q Consensus 369 ~~t~~ll 375 (490)
.....++
T Consensus 141 ~a~~al~ 147 (435)
T cd01974 141 NMVKGIL 147 (435)
T ss_pred HHHHHHH
Confidence 3333333
No 111
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=21.37 E-value=2.7e+02 Score=28.84 Aligned_cols=96 Identities=14% Similarity=0.246 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCC-------------------CCcc----cchhhHHHHHHHHHhc
Q 041063 290 ESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRL-------------------GCFN----LSVKGHADCLRFLRSF 346 (490)
Q Consensus 290 ~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpL-------------------G~~~----Lt~~g~~~~~~~l~~~ 346 (490)
...-.+++.++..+.+ ..-+++-+--||.++..+.+ |.-. .+.+.+.++.+.|+++
T Consensus 12 pG~Na~i~~vv~~a~~-~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~~~~~~~~~~l~~~ 90 (301)
T TIGR02482 12 PGMNAAIRAVVRTAIY-HGFEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGTILGTARCPEFKTEEGRQKAVENLKKL 90 (301)
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCceeccCCCCccCCHHHHHHHHHHHHHc
Confidence 4455666666655443 46788888888888866532 2111 1445677889999999
Q ss_pred CCCEEEEcCCCCCCchhHHHHHHHHHHHhCC--CCCCCCCCc
Q 041063 347 NVPLMVLGGGGYTIRNVARCWCYETAVAVGV--EPDNKLPYN 386 (490)
Q Consensus 347 ~~pvl~lleGGY~~~~var~w~~~t~~llg~--~~~~~lP~~ 386 (490)
++..|++.||-=+.+...+.+.+.---.+|. .+++++|..
T Consensus 91 ~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDNDl~~t 132 (301)
T TIGR02482 91 GIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDNDIPGT 132 (301)
T ss_pred CCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCCCcCc
Confidence 9998888877655544433322110112332 267777754
No 112
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=21.36 E-value=1.9e+02 Score=30.62 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=42.5
Q ss_pred ecCCCCCCCCCCCC-------cccchhhHHHHHHHHHhc----CCCEEEEcCCCCCCchhHHHHHHHHHHHhCCCCCCCC
Q 041063 315 QCGADSLSGDRLGC-------FNLSVKGHADCLRFLRSF----NVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKL 383 (490)
Q Consensus 315 saG~Da~~gDpLG~-------~~Lt~~g~~~~~~~l~~~----~~pvl~lleGGY~~~~var~w~~~t~~llg~~~~~~l 383 (490)
..|||.|..+|.+- +++...- .+.+..-.+ --+-|.+. |.+..+|-+.-|+++-.++.++|. .
T Consensus 131 ~LGF~~Hv~hPhklii~YLqtL~~~~~~--~l~Q~~wNfmNDslRT~v~vr---y~pe~iACaciyLaAR~~eIpLp~-~ 204 (367)
T KOG0835|consen 131 ELGFDVHVEHPHKLIIMYLQTLQLPPNL--KLLQAAWNFMNDSLRTDVFVR---YSPESIACACIYLAARNLEIPLPF-Q 204 (367)
T ss_pred HhCCeeeeeccHHHHHHHHHHhcCCCch--hHHHHHHHhhhhccccceeee---cCHHHHHHHHHHHHHhhhcCCCCC-C
Confidence 47999999999763 2333221 122221111 12344443 788888766667777777766665 3
Q ss_pred CCcccccccCC
Q 041063 384 PYNEYYEYFGP 394 (490)
Q Consensus 384 P~~~~~~~~~p 394 (490)
| .+|.+|+-
T Consensus 205 P--~Wf~~Fd~ 213 (367)
T KOG0835|consen 205 P--HWFKAFDT 213 (367)
T ss_pred c--cHHHHcCC
Confidence 4 46777763
No 113
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=21.28 E-value=65 Score=26.89 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=42.7
Q ss_pred ecCCCCCCCCCCCC-cccchhhHHHHHHHHHhcCCCEEEEcCCCCCCchhHHHHH
Q 041063 315 QCGADSLSGDRLGC-FNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWC 368 (490)
Q Consensus 315 saG~Da~~gDpLG~-~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~var~w~ 368 (490)
.++-+.+.|+.|+. +.+|-....+.++.|+..|.+|..+-+=||.+......+.
T Consensus 14 ~~~~~~~SGe~La~~LgiSRtaVwK~Iq~Lr~~G~~I~s~~~kGY~L~~~~~ll~ 68 (79)
T COG1654 14 LLTGNFVSGEKLAEELGISRTAVWKHIQQLREEGVDIESVRGKGYLLPQLPDLLP 68 (79)
T ss_pred HcCCCcccHHHHHHHHCccHHHHHHHHHHHHHhCCceEecCCCceeccCccccCc
Confidence 34556677777774 7888889999999999999999999888999876655433
No 114
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.14 E-value=2e+02 Score=26.20 Aligned_cols=41 Identities=10% Similarity=0.223 Sum_probs=22.9
Q ss_pred HhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhc
Q 041063 306 VYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSF 346 (490)
Q Consensus 306 ~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~ 346 (490)
.++||+|||+.|..=..........--.+.+..+++.+++.
T Consensus 65 ~~~pd~Vii~~G~ND~~~~~~~~~~~~~~~l~~li~~i~~~ 105 (188)
T cd01827 65 AFNPNIVIIKLGTNDAKPQNWKYKDDFKKDYETMIDSFQAL 105 (188)
T ss_pred ccCCCEEEEEcccCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 47999999999975332211000011123455677777654
No 115
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=21.07 E-value=5.6e+02 Score=28.00 Aligned_cols=55 Identities=13% Similarity=0.310 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHh-CCC-EEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHh-c-CCCEEEEcCCCCCC
Q 041063 296 FRPIIQKVMEVY-QPD-AVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRS-F-NVPLMVLGGGGYTI 360 (490)
Q Consensus 296 f~~ii~pv~~~F-~Pd-lIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~-~-~~pvl~lleGGY~~ 360 (490)
+.+.|..+.+.| +|+ +.|++.......||-+ ..+++.++. . +.|++.+--.||.-
T Consensus 114 L~~aI~~~~~~~~~p~~I~V~tTC~~elIGDDi----------~~v~~~~~~~~~~~~vi~v~tpgf~g 172 (461)
T TIGR01860 114 LEKSIHEAFDEFPDIKRMIVYTTCPTALIGDDI----------KAVAKKVQKELPDVDIFTVECPGFAG 172 (461)
T ss_pred HHHHHHHHHHhCCCCCEEEEEccCchhhhcCCH----------HHHHHHHHHhcCCCcEEEEeCCCcCC
Confidence 344555677788 487 5566666677777733 334555543 4 67999999899885
No 116
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=21.05 E-value=4.1e+02 Score=27.71 Aligned_cols=65 Identities=12% Similarity=0.237 Sum_probs=40.2
Q ss_pred HHHHHHHHHhCCCEEEEecC-CCCCCCCCCCCcccchhhHHHHHHHHH-hcCCCEEEEcCCCCCCchhHHHHHHHHHH
Q 041063 298 PIIQKVMEVYQPDAVVLQCG-ADSLSGDRLGCFNLSVKGHADCLRFLR-SFNVPLMVLGGGGYTIRNVARCWCYETAV 373 (490)
Q Consensus 298 ~ii~pv~~~F~PdlIvvsaG-~Da~~gDpLG~~~Lt~~g~~~~~~~l~-~~~~pvl~lleGGY~~~~var~w~~~t~~ 373 (490)
..+..+++.++|++|+|..+ .....||- +..+++.++ ..+.|++.+-..||. ......|......
T Consensus 70 ~~i~~~~~~~~p~~i~v~~tc~~~liGdD----------i~~v~~~~~~~~~~~vv~~~~~gf~-~~~~~G~~~a~~~ 136 (399)
T cd00316 70 EAIINELKRYKPKVIFVYTTCTTELIGDD----------IEAVAKEASKEIGIPVVPASTPGFR-GSQSAGYDAAVKA 136 (399)
T ss_pred HHHHHHHHHcCCCEEEEecCchhhhhccC----------HHHHHHHHHHhhCCceEEeeCCCCc-ccHHHHHHHHHHH
Confidence 44456678899997766544 34444542 334555554 458999999999999 4444444443333
No 117
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=20.95 E-value=1.5e+02 Score=25.74 Aligned_cols=39 Identities=28% Similarity=0.256 Sum_probs=22.9
Q ss_pred HHHHhcCCcEEEEEcccCCCchhhh-----ccccCCCeEEEeccCc
Q 041063 216 LELLKVHRRVLYVDIDVHHGDGVEE-----AFYTTDRVMTVSFHKF 256 (490)
Q Consensus 216 ~~ll~~~~RVliVD~DvHHGdGtqe-----~Fy~d~~VltiSiH~~ 256 (490)
..+.+.++-++++| ++|.+ ++.. .-.....+++.|+|+.
T Consensus 115 ~~~~~~~~~~li~D-~a~~~-~~~~~~~~~~~~~~~d~~~~s~~K~ 158 (170)
T cd01494 115 RKIAKEYGILLLVD-AASAG-GASPAPGVLIPEGGADVVTFSLHKN 158 (170)
T ss_pred HHHHHHcCCEEEEe-ccccc-ccccccccccccccCCEEEEEcccc
Confidence 34445556677776 34443 3332 2233467999999997
No 118
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=20.91 E-value=2.6e+02 Score=23.71 Aligned_cols=15 Identities=20% Similarity=0.056 Sum_probs=11.8
Q ss_pred HHHHhCCCEEEEecC
Q 041063 303 VMEVYQPDAVVLQCG 317 (490)
Q Consensus 303 v~~~F~PdlIvvsaG 317 (490)
.+.+.+||+|.+|+-
T Consensus 45 ~i~~~~pdiV~iS~~ 59 (125)
T cd02065 45 AAKEEDADVVGLSAL 59 (125)
T ss_pred HHHHcCCCEEEEecc
Confidence 344589999999984
No 119
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=20.79 E-value=1.4e+02 Score=31.45 Aligned_cols=59 Identities=22% Similarity=0.450 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhh----HHHHHHHHHhcCCCEEEE
Q 041063 295 LFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKG----HADCLRFLRSFNVPLMVL 353 (490)
Q Consensus 295 ~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g----~~~~~~~l~~~~~pvl~l 353 (490)
+..+++..++++|..++=|++.+.|-..+.|+|.+-+...| ......++...+..+=++
T Consensus 275 ~~~plis~~~~~~~v~~nIl~G~I~~~~~~~~G~L~v~l~g~~~~~~~a~~~l~~~~v~~evl 337 (339)
T COG1135 275 ADQPLLSEVARRFGVDVNILSGNIDEIQGQPFGSLVVELEGDDEEIAAAIEYLNEHGVKVEVL 337 (339)
T ss_pred ccchHHHHHHHHhCCceEEEecchhhhCCCcceEEEEEecCchhhHHHHHHHHHHcCceEEec
Confidence 34577888899999999999999999999999998877766 445666776666544433
No 120
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=20.75 E-value=3.5e+02 Score=29.17 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccch---hhHHHHHHHHHhcCCCEEEEcCCCCCCchhHH
Q 041063 291 SFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSV---KGHADCLRFLRSFNVPLMVLGGGGYTIRNVAR 365 (490)
Q Consensus 291 ~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~---~g~~~~~~~l~~~~~pvl~lleGGY~~~~var 365 (490)
+....++.++ .++.+.+||+|||+ ||=.-..+-+. .-+.+.+..|+..++|++++. | |.+...+
T Consensus 23 ~~~~~l~~l~-~~i~~~~~D~viIa-------GDifD~~~p~~~a~~~~~~~l~~L~~~~~~v~~I~-G--NHD~~~~ 89 (407)
T PRK10966 23 EHQAFLDWLL-EQVQEHQVDAIIVA-------GDIFDTGSPPSYARELYNRFVVNLQQTGCQLVVLA-G--NHDSVAT 89 (407)
T ss_pred HHHHHHHHHH-HHHHhcCCCEEEEC-------CccccCCCCcHHHHHHHHHHHHHHHhcCCcEEEEc-C--CCCChhh
Confidence 4445555544 56678999999874 33221111111 223344455666678877764 5 4444334
No 121
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=20.74 E-value=1.6e+02 Score=28.23 Aligned_cols=50 Identities=18% Similarity=0.476 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHH----HHHHHHhc--CCCEEEEcCCCCC
Q 041063 299 IIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHAD----CLRFLRSF--NVPLMVLGGGGYT 359 (490)
Q Consensus 299 ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~----~~~~l~~~--~~pvl~lleGGY~ 359 (490)
.+...+.+-.+|++++.||.. .|.+.|.+ .++.|++. ..|||++--=+|.
T Consensus 50 ~~a~~ia~~~a~~~~ld~~~N-----------~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~ 105 (178)
T PF14606_consen 50 EVADLIAEIDADLIVLDCGPN-----------MSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYP 105 (178)
T ss_dssp HHHHHHHHS--SEEEEEESHH-----------CCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----T
T ss_pred HHHHHHhcCCCCEEEEEeecC-----------CCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCcc
Confidence 344556677889999999976 45555554 34445544 6899988533344
No 122
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=20.28 E-value=1.1e+02 Score=28.29 Aligned_cols=24 Identities=21% Similarity=0.538 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEE
Q 041063 291 SFRGLFRPIIQKVMEVYQPDAVVL 314 (490)
Q Consensus 291 ~yl~~f~~ii~pv~~~F~PdlIvv 314 (490)
.+...+.+-+.+.+++++||+||-
T Consensus 72 ~~~~~~~~~l~~~l~~~~PD~IIs 95 (169)
T PF06925_consen 72 ALSRLFARRLIRLLREFQPDLIIS 95 (169)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEE
Confidence 445566667778899999999983
No 123
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=20.16 E-value=60 Score=30.76 Aligned_cols=46 Identities=28% Similarity=0.429 Sum_probs=36.4
Q ss_pred cCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCCCchhHHH
Q 041063 316 CGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARC 366 (490)
Q Consensus 316 aG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~var~ 366 (490)
+|+|...-|- .|++...++++.++..+..+.+...||=|+.+++..
T Consensus 99 ~g~d~I~lD~-----~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~y 144 (169)
T PF01729_consen 99 AGADIIMLDN-----MSPEDLKEAVEELRELNPRVKIEASGGITLENIAEY 144 (169)
T ss_dssp TT-SEEEEES------CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHH
T ss_pred hCCCEEEecC-----cCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHH
Confidence 6666666664 378888999999988887788888999999998864
No 124
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=20.03 E-value=4.6e+02 Score=27.16 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=25.1
Q ss_pred HHHHHHhcC-C-cEEEEEcccCCCchhhhcccc
Q 041063 214 GILELLKVH-R-RVLYVDIDVHHGDGVEEAFYT 244 (490)
Q Consensus 214 Aa~~ll~~~-~-RVliVD~DvHHGdGtqe~Fy~ 244 (490)
++.++.+.. + ||++|+-|.=.|.|..+.|..
T Consensus 138 ~~~~l~~~~~~k~v~ii~~~~~yg~~~~~~~~~ 170 (366)
T COG0683 138 AADYLVKKGGKKRVAIIGDDYAYGEGLADAFKA 170 (366)
T ss_pred HHHHHHHhcCCcEEEEEeCCCCcchhHHHHHHH
Confidence 456666554 4 999999999999999999864
Done!