Query 041063
Match_columns 490
No_of_seqs 377 out of 1644
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 05:09:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041063.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041063hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a69_A Histone deacetylase 3,; 100.0 7E-114 3E-118 892.8 39.0 373 61-435 2-376 (376)
2 3max_A HD2, histone deacetylas 100.0 4E-112 1E-116 876.1 38.1 366 61-428 2-367 (367)
3 3ew8_A HD8, histone deacetylas 100.0 6E-109 2E-113 856.9 34.4 370 58-432 10-380 (388)
4 1c3p_A Protein (HDLP (histone 100.0 2.9E-91 9.8E-96 725.1 29.1 319 62-385 2-324 (375)
5 1zz1_A Histone deacetylase-lik 100.0 3E-88 1E-92 701.2 32.9 336 63-425 2-365 (369)
6 2vqm_A HD4, histone deacetylas 100.0 6.6E-88 2.3E-92 708.0 26.4 366 61-442 7-401 (413)
7 2pqp_A HD7A, histone deacetyla 100.0 2.1E-84 7.1E-89 677.2 32.0 355 62-432 36-420 (421)
8 3q9b_A Acetylpolyamine amidohy 100.0 2.4E-84 8.2E-89 663.6 30.2 307 65-376 2-341 (341)
9 3men_A Acetylpolyamine aminohy 100.0 6.2E-84 2.1E-88 664.2 30.8 307 64-376 22-359 (362)
10 4hf7_A Putative acylhydrolase; 80.3 2 6.8E-05 39.2 5.3 61 289-353 63-124 (209)
11 3ced_A Methionine import ATP-b 67.0 2.4 8.1E-05 35.2 1.9 57 297-353 34-95 (98)
12 4h08_A Putative hydrolase; GDS 64.0 20 0.00067 31.8 7.7 58 278-347 48-109 (200)
13 1ivn_A Thioesterase I; hydrola 61.7 20 0.00068 31.4 7.2 46 302-353 56-105 (190)
14 3mil_A Isoamyl acetate-hydroly 59.6 20 0.00067 32.3 6.9 60 288-354 55-120 (240)
15 3p94_A GDSL-like lipase; serin 58.2 10 0.00035 33.4 4.6 68 279-354 50-121 (204)
16 3bzw_A Putative lipase; protei 55.3 16 0.00055 34.5 5.7 37 291-329 73-110 (274)
17 2qsw_A Methionine import ATP-b 53.5 3.7 0.00013 33.8 0.7 56 298-353 38-97 (100)
18 3hp4_A GDSL-esterase; psychrot 53.3 17 0.00058 31.4 5.2 59 288-353 50-109 (185)
19 3d2m_A Putative acetylglutamat 49.7 20 0.00067 37.1 5.8 70 281-358 15-85 (456)
20 1yzf_A Lipase/acylhydrolase; s 49.3 29 0.00099 29.8 6.1 65 279-354 43-111 (195)
21 2q0q_A ARYL esterase; SGNH hyd 46.3 27 0.00092 30.9 5.5 49 302-354 76-138 (216)
22 3dci_A Arylesterase; SGNH_hydr 43.5 45 0.0015 30.3 6.7 41 302-346 94-139 (232)
23 1es9_A PAF-AH, platelet-activa 43.4 17 0.0006 33.0 3.8 47 304-354 89-137 (232)
24 2qrr_A Methionine import ATP-b 43.3 5.2 0.00018 33.0 0.1 56 298-353 38-97 (101)
25 3dhx_A Methionine import ATP-b 43.1 7.9 0.00027 32.3 1.2 54 298-351 36-93 (106)
26 2q8u_A Exonuclease, putative; 42.5 51 0.0017 32.2 7.3 58 290-355 44-104 (336)
27 2vpt_A Lipolytic enzyme; ester 42.3 21 0.0007 32.2 4.1 58 288-353 67-126 (215)
28 3rjt_A Lipolytic protein G-D-S 41.8 7.9 0.00027 34.2 1.1 51 304-354 79-137 (216)
29 1uf3_A Hypothetical protein TT 39.6 73 0.0025 28.2 7.3 54 296-359 21-74 (228)
30 3av0_A DNA double-strand break 38.3 55 0.0019 32.8 6.9 58 290-355 43-103 (386)
31 1ii7_A MRE11 nuclease; RAD50, 37.8 93 0.0032 30.3 8.3 58 290-355 23-83 (333)
32 3dff_A Teicoplanin pseudoaglyc 36.6 39 0.0013 32.7 5.2 33 291-323 131-163 (273)
33 2buf_A Acetylglutamate kinase; 36.5 81 0.0028 30.7 7.6 63 290-359 8-70 (300)
34 2o14_A Hypothetical protein YX 35.7 37 0.0013 34.2 5.1 50 300-353 221-275 (375)
35 3dfi_A Pseudoaglycone deacetyl 34.5 47 0.0016 32.0 5.4 34 291-324 128-161 (270)
36 2ap9_A NAG kinase, acetylgluta 33.6 46 0.0016 32.4 5.2 66 287-359 4-69 (299)
37 3jug_A Beta-mannanase; TIM-bar 33.2 1.9E+02 0.0064 28.8 9.8 116 207-352 85-240 (345)
38 3nco_A Endoglucanase fncel5A; 32.6 3.3E+02 0.011 25.9 12.5 30 288-318 150-179 (320)
39 3aek_B Light-independent proto 32.0 1.2E+02 0.0041 32.1 8.5 56 295-361 72-128 (525)
40 3skv_A SSFX3; jelly roll, GDSL 29.1 53 0.0018 33.4 5.0 52 301-354 237-290 (385)
41 1g3q_A MIND ATPase, cell divis 28.2 44 0.0015 30.3 3.8 18 220-237 29-46 (237)
42 3dc7_A Putative uncharacterize 28.2 42 0.0014 30.2 3.7 48 307-354 81-136 (232)
43 3ea0_A ATPase, para family; al 26.9 44 0.0015 30.4 3.6 20 220-239 31-51 (245)
44 2xdq_A Light-independent proto 26.4 1.2E+02 0.0042 31.1 7.3 69 296-375 85-155 (460)
45 3tho_B Exonuclease, putative; 26.3 1.2E+02 0.0042 30.2 7.1 58 289-355 25-86 (379)
46 3q9l_A Septum site-determining 26.2 50 0.0017 30.3 3.9 20 219-238 28-47 (260)
47 1fxw_F Alpha2, platelet-activa 26.1 45 0.0015 30.3 3.5 41 305-353 91-137 (229)
48 4fva_A 5'-tyrosyl-DNA phosphod 25.5 68 0.0023 28.6 4.6 36 278-317 18-53 (256)
49 3pzt_A Endoglucanase; alpha/be 24.9 2.8E+02 0.0097 26.9 9.3 62 291-353 174-251 (327)
50 1szn_A Alpha-galactosidase; (b 24.8 1.4E+02 0.0048 30.6 7.3 72 286-357 25-100 (417)
51 1hyq_A MIND, cell division inh 24.8 55 0.0019 30.3 3.9 18 220-237 29-46 (263)
52 2rd5_A Acetylglutamate kinase- 24.1 45 0.0015 32.5 3.2 64 289-359 17-80 (298)
53 2xdq_B Light-independent proto 23.6 1.7E+02 0.0057 30.7 7.8 55 298-362 78-134 (511)
54 3t1i_A Double-strand break rep 23.3 1.6E+02 0.0056 30.5 7.5 47 290-344 54-100 (431)
55 3kjh_A CO dehydrogenase/acetyl 23.0 55 0.0019 29.5 3.5 24 294-318 118-141 (254)
56 4f1h_A Tyrosyl-DNA phosphodies 22.8 85 0.0029 27.3 4.6 17 300-316 26-42 (250)
57 1y80_A Predicted cobalamin bin 22.8 1.7E+02 0.0059 26.5 6.8 35 302-347 133-167 (210)
58 2ivx_A Cyclin-T2; transcriptio 22.7 1.3E+02 0.0045 28.2 6.2 58 356-426 182-239 (257)
59 1cp2_A CP2, nitrogenase iron p 21.8 70 0.0024 29.6 4.0 22 220-242 27-48 (269)
60 4hwg_A UDP-N-acetylglucosamine 21.5 2.3E+02 0.0079 28.3 8.1 20 298-317 84-103 (385)
61 1k7c_A Rhamnogalacturonan acet 21.5 2.1E+02 0.0071 26.0 7.2 21 300-320 54-75 (233)
62 4gz1_A Tyrosyl-DNA phosphodies 21.4 92 0.0032 27.6 4.6 17 300-316 32-48 (256)
63 2q02_A Putative cytoplasmic pr 20.7 3E+02 0.01 25.0 8.1 57 289-351 80-137 (272)
64 1vjg_A Putative lipase from th 20.7 46 0.0016 29.7 2.3 46 307-354 87-136 (218)
65 2bty_A Acetylglutamate kinase; 20.4 2E+02 0.0068 27.4 7.0 62 291-359 4-65 (282)
66 3pg5_A Uncharacterized protein 20.2 71 0.0024 31.8 3.8 22 220-242 28-49 (361)
No 1
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.5e-114 Score=892.77 Aligned_cols=373 Identities=59% Similarity=1.164 Sum_probs=354.2
Q ss_pred CCeEEEEEcCCcCCCCCCCCCCCChhHHHHHHHHHHHcCCCCCceecCCCCCCHHHHHccCcHHHHHHHHhhCCCCCCCC
Q 041063 61 KRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDP 140 (490)
Q Consensus 61 ~~~v~~~y~~~~~~~~~~~~HPe~p~R~~~i~~ll~~~gL~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~~~ 140 (490)
|++|+|+|||+|+.|.++++|||+|+|+++++++|+++||++.+++++|++|+.++|++||+++||++|++.++....+
T Consensus 2 ~~~~~~~y~~~~~~~~~g~~HPe~p~Rl~~i~~~l~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~- 80 (376)
T 4a69_A 2 AKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQG- 80 (376)
T ss_dssp CCCEEEECCTTTTCCCCCTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCTTTGGG-
T ss_pred CCeEEEEEChHHhCcCCCCCCCcCHHHHHHHHHHHHhcCCCCCceEeCCCCCCHHHHHHhCCHHHHHHHHHhCcccchh-
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999987654221
Q ss_pred chhhhhcccccCCCCCCCcchHHHHHHHHhHHHHHHHHHHcCCCCeeeecCCCCCCccccCCCCcchhcHHHHHHHHHHh
Q 041063 141 SFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLK 220 (490)
Q Consensus 141 ~~~~~~~~~~~~~D~p~~~~~~~~a~~aaGgsl~aa~~l~~g~~~~Ain~~gG~HHA~~~~a~GFC~~NdvaIAa~~ll~ 220 (490)
..+....|+++.|||+|+++|++|+++|||+|.||++|++|++++||||+||+|||++++|+||||||||||||++|++
T Consensus 81 -~~~~~~~~~l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~~~~A~~~~gG~HHA~~~~a~GFC~~NdvAiAa~~l~~ 159 (376)
T 4a69_A 81 -FTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLK 159 (376)
T ss_dssp -GHHHHHHHTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTT
T ss_pred -hhhhhceeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCcceeeeCCCCCCcCCcCCCCcchhhhHHHHHHHHHHH
Confidence 2234567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEEcccCCCchhhhccccCCCeEEEeccCcCC-CCCCCCCCCccCCCCCcceeecccCCCCCChhHHHHHHHHH
Q 041063 221 VHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGD-FFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPI 299 (490)
Q Consensus 221 ~~~RVliVD~DvHHGdGtqe~Fy~d~~VltiSiH~~g~-ffPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~yl~~f~~i 299 (490)
.++||||||||||||||||+|||+||+|||+|||++++ ||||||..+|+|.|+|+||++|||||+|++|++|+.+|+++
T Consensus 160 ~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~D~~yl~~~~~~ 239 (376)
T 4a69_A 160 YHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPV 239 (376)
T ss_dssp TCSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCBHHHHHHHHHHH
T ss_pred hCCcEEEEeccCCCCcchhhHhcCCCCEEEEecccCCCcCCCCCCCccccCCCCCCceeEeeecCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999965 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCCCchhHHHHHHHHHHHhCCCC
Q 041063 300 IQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEP 379 (490)
Q Consensus 300 i~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~var~w~~~t~~llg~~~ 379 (490)
|.|++++|+||+||+|||||+|.+||||+|+||.+||++|+++++++++|++++|||||++++++|||+++|++++|.++
T Consensus 240 l~p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~~g~~~~~~~l~~~~~p~v~v~eGGY~~~~var~w~~~~a~l~g~~~ 319 (376)
T 4a69_A 240 INQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAI 319 (376)
T ss_dssp HHHHHHHHCCSEEEEECCGGGBTTCSSCCCBBCHHHHHHHHHHHHTTCCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhCCCEEEEeCcccCCCCCcccCeecCHHHHHHHHHHHHHcCCCEEEEECCCCChhHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccccCCCcccCcC-CCCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCcc
Q 041063 380 DNKLPYNEYYEYFGPDYTLHVE-PCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVP 435 (490)
Q Consensus 380 ~~~lP~~~~~~~~~p~~~l~~~-~~~~~~~n~~~~le~i~~~~~~~l~~l~~~~~v~ 435 (490)
++++|+++|++||+|+|+|+++ +++|+|+|+++|||+|+++++|||++++++||||
T Consensus 320 ~~~~P~~~~~~~~~p~~~l~~~~~~~~~~~n~~~~l~~~~~~~~~~l~~~~~~p~~~ 376 (376)
T 4a69_A 320 SEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQ 376 (376)
T ss_dssp CSBCCCCTTGGGGTTTCBSSCCCCCCSCCCCCHHHHHHHHHHHHHHHHTTC------
T ss_pred cCCCCCchHHHHhCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 9999999999999999999998 8999999999999999999999999999999998
No 2
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=100.00 E-value=4.2e-112 Score=876.09 Aligned_cols=366 Identities=68% Similarity=1.280 Sum_probs=353.0
Q ss_pred CCeEEEEEcCCcCCCCCCCCCCCChhHHHHHHHHHHHcCCCCCceecCCCCCCHHHHHccCcHHHHHHHHhhCCCCCCCC
Q 041063 61 KRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDP 140 (490)
Q Consensus 61 ~~~v~~~y~~~~~~~~~~~~HPe~p~R~~~i~~ll~~~gL~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~~~ 140 (490)
|+||+|+|||+++.|++|++|||+|+|+++++++|.++||++.+++++|++|+.++|++||+++||++|++.++....+
T Consensus 2 ~~~v~~~y~~~~~~~~~g~~HPe~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~- 80 (367)
T 3max_A 2 KKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSE- 80 (367)
T ss_dssp CCCEEEECCGGGGGCCCCTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCGGGGGG-
T ss_pred CCeEEEEECccccCcCCCCCCCCCHHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhhCCHHHHHHHHHhCccccch-
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999877654221
Q ss_pred chhhhhcccccCCCCCCCcchHHHHHHHHhHHHHHHHHHHcCCCCeeeecCCCCCCccccCCCCcchhcHHHHHHHHHHh
Q 041063 141 SFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLK 220 (490)
Q Consensus 141 ~~~~~~~~~~~~~D~p~~~~~~~~a~~aaGgsl~aa~~l~~g~~~~Ain~~gG~HHA~~~~a~GFC~~NdvaIAa~~ll~ 220 (490)
..+...+|++++|||+|+++|++|+++|||+|.||+++++++.++||||+||+|||++++|+||||||||||||++|++
T Consensus 81 -~~~~~~~~~l~~Dtp~~~~~~e~a~~aaGgsl~aa~~v~~~~~~~Ai~~pgG~HHA~~~~a~GFC~~NdvaiAa~~l~~ 159 (367)
T 3max_A 81 -YSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLK 159 (367)
T ss_dssp -CHHHHHHTTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBCSCHHHHHHHHHTT
T ss_pred -hhhHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCcceEecCCCCCCcCCcCCCCCchhhhHHHHHHHHHHH
Confidence 1234567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEEcccCCCchhhhccccCCCeEEEeccCcCCCCCCCCCCCccCCCCCcceeecccCCCCCChhHHHHHHHHHH
Q 041063 221 VHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPII 300 (490)
Q Consensus 221 ~~~RVliVD~DvHHGdGtqe~Fy~d~~VltiSiH~~g~ffPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~yl~~f~~ii 300 (490)
.++||||||||||||||||++||+||+|||+|||+++.||||||..+|+|.|+|+||++|||||+|++|++|+.+|+++|
T Consensus 160 ~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~fPgtg~~~e~G~g~g~g~~vNvPL~~g~~d~~y~~~~~~~~ 239 (367)
T 3max_A 160 YHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPII 239 (367)
T ss_dssp TCSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSSCTTCCCCTTCCCCGGGTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCCchhhHHhcCCCCEEEEecccCCCCCCCCCCccccCCCCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCCCchhHHHHHHHHHHHhCCCCC
Q 041063 301 QKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPD 380 (490)
Q Consensus 301 ~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~var~w~~~t~~llg~~~~ 380 (490)
.|++++|+||+||||||||+|.+||||+|+||.+||.+|+++++++++|+++++||||++++|+|||+++|++++|.++|
T Consensus 240 ~~~~~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~g~~~~~~~~~~~~~p~v~~~eGGY~~~~var~wt~~ta~~~~~~i~ 319 (367)
T 3max_A 240 SKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIP 319 (367)
T ss_dssp HHHHHHHCCSEEEEECCGGGBTTCSSCCCCBCHHHHHHHHHHHHTTCCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHhCCCEEEEECCccCcCCCCCCCeeeCHHHHHHHHHHHHhcCCCEEEEeCCCCChhHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccCCCcccCcCCCCCCCCCcHHHHHHHHHHHHHHcCCC
Q 041063 381 NKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGL 428 (490)
Q Consensus 381 ~~lP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~le~i~~~~~~~l~~l 428 (490)
+++|+++||+||||+|+|++++++|+|+|+++|||+|+++++|||++|
T Consensus 320 ~~~p~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~l~~~ 367 (367)
T 3max_A 320 NELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRML 367 (367)
T ss_dssp SBCCCCTTGGGGTTTCBSSCCCCSCCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred cCCCchhhHHhhCCCeeccCCcccccCCCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999975
No 3
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=100.00 E-value=5.5e-109 Score=856.89 Aligned_cols=370 Identities=41% Similarity=0.802 Sum_probs=346.7
Q ss_pred CCCCCeEEEEEcCCcCCCCCCCCCCCChhHHHHHHHHHHHcCCCCCceecCCCCCCHHHHHccCcHHHHHHHHhhCCCCC
Q 041063 58 DGKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESS 137 (490)
Q Consensus 58 ~~~~~~v~~~y~~~~~~~~~~~~HPe~p~R~~~i~~ll~~~gL~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~ 137 (490)
..++++|+|+|||+|+.|. .+|||+|+|+++++++|+++||++.+++++|++|+.++|++||+++||++|++.++...
T Consensus 10 ~~~~~~~~~~y~~~~~~~~--~~HPe~P~Rl~~i~~ll~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~ 87 (388)
T 3ew8_A 10 SGQSLVPVYIYSPEYVSMC--DSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGD 87 (388)
T ss_dssp ----CCCEEECCHHHHHHH--TTCTTSTTHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHHC-
T ss_pred cCCCCcEEEEEChHHhccC--CCCCCCcHHHHHHHHHHHHcCCcccCeEeCCCCCCHHHHHhhCCHHHHHHHHHhccccc
Confidence 4467899999999999864 67999999999999999999999999999999999999999999999999998764332
Q ss_pred CCCchhhhhcccccCCCCCCCcchHHHHHHHHhHHHHHHHHHHcCCCCeeeecCCCCCCccccCCCCcchhcHHHHHHHH
Q 041063 138 GDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILE 217 (490)
Q Consensus 138 ~~~~~~~~~~~~~~~~D~p~~~~~~~~a~~aaGgsl~aa~~l~~g~~~~Ain~~gG~HHA~~~~a~GFC~~NdvaIAa~~ 217 (490)
.. .....+|+++.|||+|+++|++|+++|||+|.||+++++|++++|||||||+|||++++|+||||||||||||++
T Consensus 88 ~~---~~~~~~~~lg~Dtp~~~~~~e~a~~aaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~~NdiaiAa~~ 164 (388)
T 3ew8_A 88 DD---HPDSIEYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILR 164 (388)
T ss_dssp ----------CCSCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHH
T ss_pred cc---chhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHcCCCceeeecCCcccceeecCCCCchhhhHHHHHHHH
Confidence 11 122457889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcEEEEEcccCCCchhhhccccCCCeEEEeccCcC-CCCCCCCCCCccCCCCCcceeecccCCCCCChhHHHHHH
Q 041063 218 LLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFG-DFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLF 296 (490)
Q Consensus 218 ll~~~~RVliVD~DvHHGdGtqe~Fy~d~~VltiSiH~~g-~ffPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~yl~~f 296 (490)
|++.++||||||||||||||||+|||+||+|||+|||+++ .||||||..+|+|.|+|+||++|||||+|++|++|+.+|
T Consensus 165 l~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~d~~y~~~~ 244 (388)
T 3ew8_A 165 LRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQIC 244 (388)
T ss_dssp HTTTCSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHH
T ss_pred HHhcCCeEEEEecCCCCChhHHHHhccCCCEEEEecCCCCCCCCCCCCCcccccCCCCcceeeeccCCCCCCHHHHHHHH
Confidence 9998999999999999999999999999999999999994 699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCCCchhHHHHHHHHHHHhC
Q 041063 297 RPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVG 376 (490)
Q Consensus 297 ~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~var~w~~~t~~llg 376 (490)
+++|.|++++|+||+||||||||++.+||||+|+||.+||.+|+++|+++++|+++++||||++.+++|||+++|++|+|
T Consensus 245 ~~~l~p~~~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~~~p~l~~~gGGY~~~~var~w~~~~~~l~g 324 (388)
T 3ew8_A 245 ESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILG 324 (388)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCCCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCCCCCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCCChhHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccccccCCCcccCcCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCC
Q 041063 377 VEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAP 432 (490)
Q Consensus 377 ~~~~~~lP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~le~i~~~~~~~l~~l~~~~ 432 (490)
.+++++||+++||++|+|+|+|++.+++|+|+|+++|||+|++++++||+++++-.
T Consensus 325 ~~l~~~lP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~l~~~~~~~ 380 (388)
T 3ew8_A 325 KTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVVIEG 380 (388)
T ss_dssp CCCCSBCCCCTTGGGGTTTCBSCCCCCSCCCCCCHHHHHHHHHHHHHHHTTCCC--
T ss_pred CCCCCCCCcccchhhcCCCccccCCcccCCCCCCHHHHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999998754
No 4
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=100.00 E-value=2.9e-91 Score=725.13 Aligned_cols=319 Identities=34% Similarity=0.540 Sum_probs=300.9
Q ss_pred CeEEEEEcCCcCCCCCCCCCCCChhHHHHHHHHHHHcCCCCCceecCCCCCCHHHHHccCcHHHHHHHHhhCCCCCCCCc
Q 041063 62 RRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDPS 141 (490)
Q Consensus 62 ~~v~~~y~~~~~~~~~~~~HPe~p~R~~~i~~ll~~~gL~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~~~~ 141 (490)
++++|+|||+|..|.++++|||+|+|+++++++|+++||++.+++++|++|+.++|++||+++||++|++.++.....
T Consensus 2 ~~t~~vy~~~~~~h~~g~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~at~~~l~~vH~~~Yv~~l~~~~~~~~~~-- 79 (375)
T 1c3p_A 2 KKVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERCQCVP-- 79 (375)
T ss_dssp CCEEEEECGGGGGSCCCTTCGGGSCCHHHHHHHHHHTTCCCGGGEEECCCCCHHHHTTTSCHHHHHHHHHHHHHTSCC--
T ss_pred ceEEEEECHHHcCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCeEeCCCCCCHHHHHHhCCHHHHHHHHHhccccCCC--
Confidence 468999999999999999999999999999999999999999999999999999999999999999999876432111
Q ss_pred hhhhhccccc-CCCCCCCcchHHHHHHHHhHHHHHHHHHHcCCCCeeeecCCCCCCccccCCCCcchhcHHHHHHHHHHh
Q 041063 142 FSRHLKRFNV-GEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLK 220 (490)
Q Consensus 142 ~~~~~~~~~~-~~D~p~~~~~~~~a~~aaGgsl~aa~~l~~g~~~~Ain~~gG~HHA~~~~a~GFC~~NdvaIAa~~ll~ 220 (490)
.+....+++ +.|||+++++|++|++++||+|.||+++++|+ +|||||||+|||++++++||||||||||||++|++
T Consensus 80 -~~~~~~~~l~~~dtp~~~~~~~~a~~aaGg~l~aa~~v~~g~--~a~~ppGG~HHA~~~~a~GFC~fNnvAiAa~~l~~ 156 (375)
T 1c3p_A 80 -KGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGN--VAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRK 156 (375)
T ss_dssp -TTHHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTC--EEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHHH
T ss_pred -hHHhhccccCCCCcccChhHHHHHHHHhhHHHHHHHHHHcCC--ceeecCcccceeeeccCCCceeecHHHHHHHHHHH
Confidence 122356777 68999999999999999999999999999997 89999999999999999999999999999999998
Q ss_pred cC-CcEEEEEcccCCCchhhhccccCCCeEEEeccCcCC-CCCCCCCCCccC-CCCCcceeecccCCCCCChhHHHHHHH
Q 041063 221 VH-RRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGD-FFPGTGHIKDVG-AGQGKFYALNVPLNDGLDDESFRGLFR 297 (490)
Q Consensus 221 ~~-~RVliVD~DvHHGdGtqe~Fy~d~~VltiSiH~~g~-ffPgtG~~~e~G-~g~G~g~~vNVPL~~G~~D~~yl~~f~ 297 (490)
.+ +||||||||||||||||+|||+||+|||+|||+++. |||+||..+++| .|+|+|+++|||||+|++|++|+.+|+
T Consensus 157 ~g~~RV~IvD~DvHHGnGtq~iF~~dp~Vl~~SiH~~~~~ffPgtG~~~e~G~~g~g~g~~vNvPL~~g~~D~~yl~a~~ 236 (375)
T 1c3p_A 157 KGFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALE 236 (375)
T ss_dssp TTCCCEEEEECSSSCCHHHHHHHTTCSSEEEEEEEECTTTSTTSSSCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHH
T ss_pred hCCCeEEEEecCCCCCHHHHHHhccCCCEEEEecccCCCCCCCCCCCccccCCcCCCCceEEEEeCCCCCCHHHHHHHHH
Confidence 76 699999999999999999999999999999999965 799999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCCCchhHHHHHHHHHHHhCC
Q 041063 298 PIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGV 377 (490)
Q Consensus 298 ~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~var~w~~~t~~llg~ 377 (490)
++|.|++++|+||+||||||||+|.+||||.|+||.+||.+++++|+++..|++++|||||++.++++||++++++|+|.
T Consensus 237 ~~l~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~vv~vleGGY~~~~l~~~~~~~~~~l~g~ 316 (375)
T 1c3p_A 237 KSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPYALARAWTLIWCELSGR 316 (375)
T ss_dssp HHHHHHHHHCCCSEEEEECCSTTBTTCTTCSCCBCHHHHHHHHHHHHHHHCSCEEECCCCCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHHhccceEEEECCCCChHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 041063 378 EPDNKLPY 385 (490)
Q Consensus 378 ~~~~~lP~ 385 (490)
++++.+|.
T Consensus 317 ~~~~~lp~ 324 (375)
T 1c3p_A 317 EVPEKLNN 324 (375)
T ss_dssp CCCSSCCH
T ss_pred CCCccCCH
Confidence 99998995
No 5
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=100.00 E-value=3e-88 Score=701.22 Aligned_cols=336 Identities=24% Similarity=0.383 Sum_probs=306.8
Q ss_pred eEEEEEcCCcCCCCCCCC----------------CCCChhHHHHHHHHHHHcCCCCCceecCCCCCCHHHHHccCcHHHH
Q 041063 63 RVSYFYEPTIGDYYYGQG----------------HPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYV 126 (490)
Q Consensus 63 ~v~~~y~~~~~~~~~~~~----------------HPe~p~R~~~i~~ll~~~gL~~~~~~~~p~~At~eeL~~vHs~~YI 126 (490)
+++|+|||+|..|.++.. |||+|+|+++++++|+++|+++.+++++|++|+.++|++||+++||
T Consensus 2 ~t~~~y~~~~~~h~~~~~~~~~~~~g~~~~~~~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~~~l~~vH~~~Yv 81 (369)
T 1zz1_A 2 AIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHL 81 (369)
T ss_dssp CEEEECCGGGGGCCCCSSSSSCCBTTTTBCCCSSCTTCTHHHHHHHHHHHHTTGGGGSEECCCCCCCHHHHHTTSCHHHH
T ss_pred eEEEEEchHHcccCCCCcccccccccccccccCCCCCCHHHHHHHHHHHHhcCCCccceEeCCCcCCHHHHHHhccHHHH
Confidence 589999999999999988 9999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCC-CCCCCCchhhhhcccccCC-CCCCCcchHHHHHHHHhHHHHHHHHHHcCCCCe--eeecCCCCCCccccCC
Q 041063 127 EFLASVSP-ESSGDPSFSRHLKRFNVGE-DCPVFDGLFGFCQASAGGSIGAAVKLNRGDADI--AVNWAGGLHHAKKSEA 202 (490)
Q Consensus 127 ~~L~~~~~-~~~~~~~~~~~~~~~~~~~-D~p~~~~~~~~a~~aaGgsl~aa~~l~~g~~~~--Ain~~gG~HHA~~~~a 202 (490)
++|++.++ .. .+.++. |||+++++|++|++++||+|.||+.+++|+++. |+||||| |||+++++
T Consensus 82 ~~l~~~~~~~~-----------~~~l~~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~~~~afa~~rppG-HHA~~~~a 149 (369)
T 1zz1_A 82 ENMKRVSNLPT-----------GGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPG-HHAPHNAA 149 (369)
T ss_dssp HHHHHHHHSTT-----------CEECSSSSCEECTTTHHHHHHHHHHHHHHHHHHHTTSCSEEEECCSSCC-TTCCTTCC
T ss_pred HHHHHhCcccc-----------ceecCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEecCCc-cCcCCCCC
Confidence 99998754 21 234777 999999999999999999999999999998764 6789999 99999999
Q ss_pred CCcchhcHHHHHHHHHHhcC--CcEEEEEcccCCCchhhhccccCCCeEEEeccCcCCCCC-CCCCCCccCCCCCcceee
Q 041063 203 SGFCYVNDIVLGILELLKVH--RRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFP-GTGHIKDVGAGQGKFYAL 279 (490)
Q Consensus 203 ~GFC~~NdvaIAa~~ll~~~--~RVliVD~DvHHGdGtqe~Fy~d~~VltiSiH~~g~ffP-gtG~~~e~G~g~G~g~~v 279 (490)
+||||||||||||++|++++ +||+|||||||||||||+|||+||+|||+|||+++ ||| +||..+|+|.|+|+|+++
T Consensus 150 ~GFC~fNnvAiAa~~l~~~~g~~RV~IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~~~-~yP~~tG~~~e~G~g~g~g~~v 228 (369)
T 1zz1_A 150 MGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHL-CFPPDSGYSTERGAGNGHGYNI 228 (369)
T ss_dssp BTTBSSCHHHHHHHHHHHTSCCSCEEEEECSSSCCHHHHHHTTTCTTEEEEEEEETT-SSSTTCCCTTCCCCGGGTTCEE
T ss_pred CCchHhhHHHHHHHHHHHhcCCCeEEEEecCCCCchhhhHHhcCCCCEEEEeccCCC-CCCCCCCcccccCCCCCCceEE
Confidence 99999999999999999874 89999999999999999999999999999999997 899 999999999999999999
Q ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhc-----CCCEEEEc
Q 041063 280 NVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSF-----NVPLMVLG 354 (490)
Q Consensus 280 NVPL~~G~~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~-----~~pvl~ll 354 (490)
|||||+|++|++|+.+|+++|.|++++|+||+||||||||+|.+||||.|+||.+||.+++++|+++ ++|++++|
T Consensus 229 NvPL~~g~~d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~~~~g~vv~vl 308 (369)
T 1zz1_A 229 NVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQ 308 (369)
T ss_dssp EEEECTTCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTTCCCBBCHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred eeecCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999998764 79999999
Q ss_pred CCCCCCchhHHHHHHHHHHHhCCCCCCCCCCcccccccCCCcccCcCCCCCCCCCcHHHHHHHHHHHHHHc
Q 041063 355 GGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQL 425 (490)
Q Consensus 355 eGGY~~~~var~w~~~t~~llg~~~~~~lP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~le~i~~~~~~~l 425 (490)
||||+++++++||++++..|+|.++ ...|..++++. .+.+...+++.++...+.+.|
T Consensus 309 eGGY~~~~l~~~~~~~~~~l~g~~~-~~~p~~~~~~~-------------~~~~~~~~~~~~~i~~~~~~~ 365 (369)
T 1zz1_A 309 EGGYSPHYLPFCGLAVIEELTGVRS-LPDPYHEFLAG-------------MGGNTLLDAERAAIEEIVPLL 365 (369)
T ss_dssp CCCCCTTTHHHHHHHHHHHHHCCCC-CCCTTHHHHHT-------------TCCCSCCHHHHHHHHTTGGGG
T ss_pred CCCCCccHHHHHHHHHHHHHhCCCC-CCCchhHHHhh-------------ccccchHHHHHHHHHHHHHHh
Confidence 9999999999999999999999887 66677666652 223334466666666655555
No 6
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=100.00 E-value=6.6e-88 Score=707.96 Aligned_cols=366 Identities=23% Similarity=0.383 Sum_probs=315.1
Q ss_pred CCeEEEEEcCCcCCCCCC----CCCCCChhHHHHHHHHHHHcCCCCCceecCCCCCCHHHHHccCcHHHHHHHHhhCCCC
Q 041063 61 KRRVSYFYEPTIGDYYYG----QGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPES 136 (490)
Q Consensus 61 ~~~v~~~y~~~~~~~~~~----~~HPe~p~R~~~i~~ll~~~gL~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~ 136 (490)
+.+|+++||+.|..|..+ ..|||+|+|+++|+++|+++||.+++++++|++|+.++|++||+++||++++......
T Consensus 7 ~~~Tg~vyd~~~l~H~~~~g~~~~HPE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~eeL~~vHs~~Yv~~~~~~~~~~ 86 (413)
T 2vqm_A 7 RFTTGLVYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNR 86 (413)
T ss_dssp CSSEEEECCGGGCSCCCTTC-------CCCHHHHHHHHHHHHTHHHHSEEECCCCCCHHHHTTTSCHHHHHHHHSCGGGG
T ss_pred CCeEEEEEcHHHhccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCcCCeEeCCCCCCHHHHHHhCCHHHHHHHhcCchhh
Confidence 478999999999999854 4599999999999999999999999999999999999999999999998886532111
Q ss_pred CC--CCchhh---------hhcccccCCCCCCCc-chHHHHHHHHhHHHHHHHHHHcCCCCeee--ecCCCCCCccccCC
Q 041063 137 SG--DPSFSR---------HLKRFNVGEDCPVFD-GLFGFCQASAGGSIGAAVKLNRGDADIAV--NWAGGLHHAKKSEA 202 (490)
Q Consensus 137 ~~--~~~~~~---------~~~~~~~~~D~p~~~-~~~~~a~~aaGgsl~aa~~l~~g~~~~Ai--n~~gG~HHA~~~~a 202 (490)
.. ...... ....+.++.|+++.. +++++|++++|+++.|++++++|+++.|| +|||| |||+++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~dt~~~~~~s~~aA~laaG~~l~a~~~v~~g~~~~afa~vrppG-HHA~~~~a 165 (413)
T 2vqm_A 87 QKLDSKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPG-HHAEESTP 165 (413)
T ss_dssp CC----HHHHHHHHHEEECTTSCEEECTTSTHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCCSCC-TTCBTTBC
T ss_pred hHhhhhhhccchhhhhhccccCCcCccCCccccchhHHHHHHHHHHHHHHHHHHHhcCCccceeeeccccc-ccCcCCCC
Confidence 10 000000 011223456666544 68899999999999999999999988654 56776 99999999
Q ss_pred CCcchhcHHHHHHHHHHhcC--CcEEEEEcccCCCchhhhccccCCCeEEEeccCc--CCCCCCCCCCCccCCCCCccee
Q 041063 203 SGFCYVNDIVLGILELLKVH--RRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKF--GDFFPGTGHIKDVGAGQGKFYA 278 (490)
Q Consensus 203 ~GFC~~NdvaIAa~~ll~~~--~RVliVD~DvHHGdGtqe~Fy~d~~VltiSiH~~--g~ffPgtG~~~e~G~g~G~g~~ 278 (490)
+||||||||||||++|++.+ +||||||||||||||||+|||+|++|||+|||++ +.||||||..+|+|.|+|.||+
T Consensus 166 ~GFC~~Nnvaiaa~~~~~~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~f~pgtG~~~e~G~g~g~g~~ 245 (413)
T 2vqm_A 166 MGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFN 245 (413)
T ss_dssp BTTBSSCHHHHHHHHHHHHSCCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGCSTTCCCCTTCCCSGGGTTCE
T ss_pred CCccccchHHHHHHHHHHhcCCCeEEEEecccCCCccHHHHHhcCcccccccchhccCCCCCCCCCCHHHcCCCcccccc
Confidence 99999999999999998764 8999999999999999999999999999999998 5699999999999999999999
Q ss_pred ecccCCC----CCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCC--CCCCCcccchhhHHHHHHHHHhc-CCCEE
Q 041063 279 LNVPLND----GLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSG--DRLGCFNLSVKGHADCLRFLRSF-NVPLM 351 (490)
Q Consensus 279 vNVPL~~----G~~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~g--DpLG~~~Lt~~g~~~~~~~l~~~-~~pvl 351 (490)
+||||+. +++|++|+.+|+.+|.|++++|+||+||||||||++.+ ||||+|+||.+||.+++++|+++ ++|++
T Consensus 246 ~n~pl~~g~~~~~~D~~y~~~~~~~v~p~~~~f~PdlivvsaG~Da~~~d~D~lg~~~lt~~~~~~~~~~l~~~a~~~~v 325 (413)
T 2vqm_A 246 VNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGRIV 325 (413)
T ss_dssp EEEEECSCSSSCCCHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBSSCTTTTCCCCBCHHHHHHHHHHHHTSGGGCEE
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcCCCCCCCCCcccCHHHHHHHHHHHHHhcCCCEE
Confidence 9999974 58899999999999999999999999999999999999 66999999999999999999997 89999
Q ss_pred EEcCCCCCCchhHHHHHHHHHHHhCCCCCCCCCCcccccccCCCcccCcCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCC
Q 041063 352 VLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHA 431 (490)
Q Consensus 352 ~lleGGY~~~~var~w~~~t~~llg~~~~~~lP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~le~i~~~~~~~l~~l~~~ 431 (490)
++|||||+++++++||++++++|+|.++++ +|+. .+. ..++.|+.++|+++++.+.++|+.|+.+
T Consensus 326 ~vleGGY~~~~l~~~~~~~~~~l~g~~~~~-~p~~----------~~~----~~p~~~~~~~~~~v~~~~~~~W~~l~~~ 390 (413)
T 2vqm_A 326 LALEGGHDLTAICDASEACVSALLGNELDP-LPEK----------VLQ----QRPNANAVRSMEKVMEIHSKYWRCLQRT 390 (413)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTTCCCCC-CCHH----------HHH----CCCCHHHHHHHHHHHHHHHTTCGGGTSC
T ss_pred EEeCcCCChHHHHHHHHHHHHHHcCCCCCC-CChh----------hhh----cCCChHHHHHHHHHHHHHHHHhhhhhcc
Confidence 999999999999999999999999988753 4421 111 2468899999999999999999999999
Q ss_pred CCcccccCCCC
Q 041063 432 PSVPFQTTPAT 442 (490)
Q Consensus 432 ~~v~~~~~p~~ 442 (490)
++++++.++..
T Consensus 391 ~~~~~~~~~~~ 401 (413)
T 2vqm_A 391 TSTAGRSLIEA 401 (413)
T ss_dssp CCCTTSCHHHH
T ss_pred hhhcCcCcchh
Confidence 99999886553
No 7
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=100.00 E-value=2.1e-84 Score=677.20 Aligned_cols=355 Identities=24% Similarity=0.367 Sum_probs=307.0
Q ss_pred CeEEEEEcCCcCCCC----CCCCCCCChhHHHHHHHHHHHcCCCCCceecCCCCCCHHHHHccCcHHHHHHHHhhCCCCC
Q 041063 62 RRVSYFYEPTIGDYY----YGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESS 137 (490)
Q Consensus 62 ~~v~~~y~~~~~~~~----~~~~HPe~p~R~~~i~~ll~~~gL~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~ 137 (490)
.+++|+||++|..|. +++.|||+|+|+++|+++|+++||++.+++++|++|+.+||++||+++||+.+........
T Consensus 36 ~~t~~vyd~~~l~H~~~~~~~~~HPE~P~Rl~~i~~~L~~~Gl~~~~~~~~p~~At~eeL~~vHs~~YI~~~~~~~l~~~ 115 (421)
T 2pqp_A 36 FTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRL 115 (421)
T ss_dssp TCEEEECCGGGGGCCCTTCCTTSCSSCTHHHHHHHHHHHHTTCGGGSEEECCCCCCHHHHTTTSCHHHHHHHHCCTTCSC
T ss_pred CeEEEEECHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhcCCHHHHHhhhcchhhhh
Confidence 579999999999998 6789999999999999999999999999999999999999999999999986543211111
Q ss_pred CCCch--hh----h----h--cccccCCCCCCC-cchHHHHHHHHhHHHHHHHHHHcCCCC--eeeecCCCCCCccccCC
Q 041063 138 GDPSF--SR----H----L--KRFNVGEDCPVF-DGLFGFCQASAGGSIGAAVKLNRGDAD--IAVNWAGGLHHAKKSEA 202 (490)
Q Consensus 138 ~~~~~--~~----~----~--~~~~~~~D~p~~-~~~~~~a~~aaGgsl~aa~~l~~g~~~--~Ain~~gG~HHA~~~~a 202 (490)
..... .. . . ...+++.|++++ .++|++|++++|++|.|++++++|+++ +|++|||| |||+++++
T Consensus 116 ~~~~~~~~g~~~~~~~~~~p~gg~~~D~Dt~~~~~~s~~aa~~aaG~~~~a~~~v~~g~~~~afa~~rPpG-HHA~~~~a 194 (421)
T 2pqp_A 116 KLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPG-HHADHSTA 194 (421)
T ss_dssp CCCHHHHHHHHSCCCCEECTTSCEESSSSCEECTTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCSSCC-TTCBTTBC
T ss_pred hhhcccccccchhhhhhhccccCcCCCCCcccCCccHHHHHHHHHhHHHHHHHHHHcCccccceeeCCCCC-CCCCCCCC
Confidence 00000 00 0 0 012355677776 489999999999999999999999876 56778888 99999999
Q ss_pred CCcchhcHHHHHHHHHHhc--CCcEEEEEcccCCCchhhhccccCCCeEEEeccCc--CCCCCCCCCCCccCCCCCccee
Q 041063 203 SGFCYVNDIVLGILELLKV--HRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKF--GDFFPGTGHIKDVGAGQGKFYA 278 (490)
Q Consensus 203 ~GFC~~NdvaIAa~~ll~~--~~RVliVD~DvHHGdGtqe~Fy~d~~VltiSiH~~--g~ffPgtG~~~e~G~g~G~g~~ 278 (490)
+||||||||||||++|++. .+||+|||||||||||||+|||+||+|||||||+| ++||||||..+|+|.|.|+||+
T Consensus 195 ~GFC~fNnvAiAa~~l~~~~~~~RV~ivD~DvHHGnGtq~iF~~dp~Vl~~S~H~~~~g~~yPgtG~~~e~G~g~g~g~~ 274 (421)
T 2pqp_A 195 MGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFN 274 (421)
T ss_dssp BTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGTSTTCCCCTTCCCCGGGTTCE
T ss_pred CcchhhCHHHHHHHHHHHhcCCCeEEEEecCCCCChhHHHHhcCCCCEEEEecccCCCCCCCCCCCChhhccCCCCccce
Confidence 9999999999999999986 38999999999999999999999999999999998 5799999999999999999999
Q ss_pred ecccCCCC----CChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCC--CCCCcccchhhHHHHHHHHHhc-CCCEE
Q 041063 279 LNVPLNDG----LDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGD--RLGCFNLSVKGHADCLRFLRSF-NVPLM 351 (490)
Q Consensus 279 vNVPL~~G----~~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gD--pLG~~~Lt~~g~~~~~~~l~~~-~~pvl 351 (490)
+||||+.| ++|++|+.+|+.+|.|++++|+||+||||||||++.+| |||+|+||.++|.++++.|+.+ ++|++
T Consensus 275 vNvPl~~gl~~g~~d~~yl~~~~~~l~p~~~~F~PdlIvvsaG~Da~~gD~dpLg~~~lt~~~y~~~~~~l~~~a~grvv 354 (421)
T 2pqp_A 275 VNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVV 354 (421)
T ss_dssp EEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCCGGGCCCBBCHHHHHHHHHHHTTSGGGCEE
T ss_pred eccccCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCcccccccccccCCceeCHHHHHHHHHHHHHHcCCCEE
Confidence 99999754 78999999999999999999999999999999999997 9999999999999999999987 88999
Q ss_pred EEcCCCCCCchhHHHHHHHHHHHhCCCCCCCCCCcccccccCCCcccCcCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCC
Q 041063 352 VLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHA 431 (490)
Q Consensus 352 ~lleGGY~~~~var~w~~~t~~llg~~~~~~lP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~le~i~~~~~~~l~~l~~~ 431 (490)
++|||||++.++++||+.++.+|+|.+++. +|... ....++.+..+.|+++++.+.+.|+.++..
T Consensus 355 ~vlEGGY~l~~l~~~~~a~~~~L~g~~~~~-l~~~~--------------~~~~p~~~a~~~i~~v~~~~~~yW~~l~~~ 419 (421)
T 2pqp_A 355 LALEGGHDLTAICDASEACVAALLGNRVDP-LSEEG--------------WKQKPNLNAIRSLEAVIRVHSKYWGCMQRL 419 (421)
T ss_dssp EEECSCCCHHHHHHHHHHHHHHHTTCCCCG-GGCGG--------------GGSCCCHHHHHHHHHHHHHHTTTCGGGCC-
T ss_pred EEECCCCChHHHHHHHHHHHHHHcCCCCCC-Ccccc--------------cccccCHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 999999999999999999999999987543 44210 112466678889999999999999988754
Q ss_pred C
Q 041063 432 P 432 (490)
Q Consensus 432 ~ 432 (490)
.
T Consensus 420 ~ 420 (421)
T 2pqp_A 420 A 420 (421)
T ss_dssp -
T ss_pred c
Confidence 3
No 8
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=100.00 E-value=2.4e-84 Score=663.60 Aligned_cols=307 Identities=21% Similarity=0.361 Sum_probs=279.7
Q ss_pred EEEEcCCcCCCCCCC--------CCCCChhHHHHHHHHHHHcCCCCCceecCCCCCCHHHHHccCcHHHHHHHHhhCCCC
Q 041063 65 SYFYEPTIGDYYYGQ--------GHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPES 136 (490)
Q Consensus 65 ~~~y~~~~~~~~~~~--------~HPe~p~R~~~i~~ll~~~gL~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~ 136 (490)
-+||||++..|..+. .|||+|+|+++|+++|+++||. ++++|++|+.++|++||+++||++|++.++.+
T Consensus 2 ~~v~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl~---~~~~p~~at~e~L~~vHs~~Yi~~l~~~~~~~ 78 (341)
T 3q9b_A 2 RVIFSEDHKLRNAKTELYGGELVPPFEAPFRAEWILAAVKEAGFD---DVVAPARHGLETVLKVHDAGYLNFLETAWDRW 78 (341)
T ss_dssp EEECCGGGGGCCCSCEEETTEEECCSSCTHHHHHHHHHHHHTTCC---CEECCCCCCSTTGGGTSCHHHHHHHHHHHHHH
T ss_pred EEEECcHHhccCCcccccCCCcCCCCCChHHHHHHHHHHHhCCCC---ceeCCCCCCHHHHHHhCCHHHHHHHHHhhhhh
Confidence 368999999998865 6999999999999999999985 68899999999999999999999999864210
Q ss_pred ---------CCC-----------C-chhhhhcccccCCCCCCCcchHHHHHHHHhHHHHHHHHHHcCC-CCeeeecCCCC
Q 041063 137 ---------SGD-----------P-SFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGD-ADIAVNWAGGL 194 (490)
Q Consensus 137 ---------~~~-----------~-~~~~~~~~~~~~~D~p~~~~~~~~a~~aaGgsl~aa~~l~~g~-~~~Ain~~gG~ 194 (490)
... + ....+...|+++.|||+++++|++|+++|||+|.||+++++|+ ..+|++||||
T Consensus 79 ~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~g~~~~d~dt~~~~~~~~aa~~aaG~~l~a~~~v~~g~~~afal~rppG- 157 (341)
T 3q9b_A 79 KAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPG- 157 (341)
T ss_dssp HHTTCSSCBCCCBCCCTTCCCCCCSSHHHHHHHTBSBTTCCBCTTHHHHHHHHHHHHHHHHHHHHHTCSEEEECCSSCC-
T ss_pred hhcccccccccccccccccccccccchhcccceeccCCCCCcChhHHHHHHHHHHHHHHHHHHHHhCCCceEecCCCCC-
Confidence 000 0 0011245578899999999999999999999999999999986 4578899998
Q ss_pred CCccccCCCCcchhcHHHHHHHHHHhc-CCcEEEEEcccCCCchhhhccccCCCeEEEeccCc-CCCCCC-CCCCCccCC
Q 041063 195 HHAKKSEASGFCYVNDIVLGILELLKV-HRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKF-GDFFPG-TGHIKDVGA 271 (490)
Q Consensus 195 HHA~~~~a~GFC~~NdvaIAa~~ll~~-~~RVliVD~DvHHGdGtqe~Fy~d~~VltiSiH~~-g~ffPg-tG~~~e~G~ 271 (490)
|||++++++||||||||||||++|++. .+||+|||||||||||||++||+||+|||+|||++ +.|||+ ||..+|+|.
T Consensus 158 HHA~~~~a~GFC~~NnvaiAa~~l~~~g~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~G~ 237 (341)
T 3q9b_A 158 HHAGIDMFGGYCFINNAAVAAQRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHFLGYAEETGK 237 (341)
T ss_dssp TTCBTTBBBTTBSSCHHHHHHHHHHHTTCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGSTTCSSCCTTCCCC
T ss_pred CCCCCCCCCCccccCHHHHHHHHHHHcCCCeEEEEecCCCCCcchhHHhcCCCCEEEEeccCCCccCCCCCCCcccccCC
Confidence 999999999999999999999999998 69999999999999999999999999999999999 479999 999999999
Q ss_pred CCCcceeecccCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEE
Q 041063 272 GQGKFYALNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLM 351 (490)
Q Consensus 272 g~G~g~~vNVPL~~G~~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl 351 (490)
|+|++|++|||||+|++|++|+.+|+.++ |.+++|+||+||||||||++.+||||+|+||.+||.+|+++|+++++|++
T Consensus 238 g~g~g~~vNvpL~~g~~d~~y~~~~~~~l-~~l~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~~~~~v 316 (341)
T 3q9b_A 238 GAGAGTTANYPMGRGTPYSVWGEALTDSL-KRIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAASGVPLL 316 (341)
T ss_dssp GGGTTCEEEEEECTTCBHHHHHHHHHHHH-HHHHHHTCSCEEEEECCTTBTTCTTCCCBBCTTHHHHHHHHHHTTSSCEE
T ss_pred CCCCceeEeeecCCCCChHHHHHHHHHHH-HHHHhhCCCEEEEeCCccccCCCCCCCccCCHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999999999999976 67899999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCchhHHHHHHHHHHHhC
Q 041063 352 VLGGGGYTIRNVARCWCYETAVAVG 376 (490)
Q Consensus 352 ~lleGGY~~~~var~w~~~t~~llg 376 (490)
++|||||+++++++|+......+.|
T Consensus 317 ~vleGGY~~~~l~~~~~~~l~g~~~ 341 (341)
T 3q9b_A 317 VVMEGGYGVPEIGLNVANVLKGVAG 341 (341)
T ss_dssp EEECCCCCCTTHHHHHHHHHHHHHC
T ss_pred EEECCCCChHHHHHHHHHHHHHhcC
Confidence 9999999999999999988877643
No 9
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=6.2e-84 Score=664.17 Aligned_cols=307 Identities=25% Similarity=0.408 Sum_probs=281.2
Q ss_pred EEEEEcCCcCCCCCCC--------CCCCChhHHHHHHHHHHHcCCCCCceecCCCCCCHHHHHccCcHHHHHHHHhhCCC
Q 041063 64 VSYFYEPTIGDYYYGQ--------GHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPE 135 (490)
Q Consensus 64 v~~~y~~~~~~~~~~~--------~HPe~p~R~~~i~~ll~~~gL~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~ 135 (490)
..+||||+|..|..+. .|||+|+|+++|+++|+++|| ++++|++|+.++|++||+++||++|++.+++
T Consensus 22 M~~~~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl----~~~~p~~At~e~L~~vHs~~YI~~l~~~~~~ 97 (362)
T 3men_A 22 MLTYFHPDQSLHHPRTYFSRGRMRMPQEVPERAARLVAAAFAMGF----PVREPDDFGIAPIAAVHDTHYLRFLETVHRE 97 (362)
T ss_dssp CEEECCGGGGGCCCCCEEETTEEECCCSCTHHHHHHHHHHHHTTC----CEECCCCCCSHHHHTTSCHHHHHHHHHHHHH
T ss_pred eEEEEChHHHhhCCccccccCCcCCCCCChHHHHHHHHHHHhCCC----eEeCCCCCCHHHHHHhCCHHHHHHHHHhhhh
Confidence 4588999999999875 799999999999999999997 6899999999999999999999999876421
Q ss_pred CC-------CC------------C-chhhhhcccccCCCCCCCcchHHHHHHHHhHHHHHHHHHHcCC-CCeeeecCCCC
Q 041063 136 SS-------GD------------P-SFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGD-ADIAVNWAGGL 194 (490)
Q Consensus 136 ~~-------~~------------~-~~~~~~~~~~~~~D~p~~~~~~~~a~~aaGgsl~aa~~l~~g~-~~~Ain~~gG~ 194 (490)
+. .+ + ....+...+.++.|||+++++|++|++++|++|.||+++++|+ ..+|++||||
T Consensus 98 ~~~~~~~~~~e~~p~~~p~~~~~p~~~~~~~g~~~~d~Dtpv~~~~~~aa~~aaG~~l~aa~~v~~g~~~afal~rPpG- 176 (362)
T 3men_A 98 WKAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAAYALCRPPG- 176 (362)
T ss_dssp HHTSCGGGCSSBCCCBCCCSSCCCCSHHHHHHHHBCBTTCCBCTTHHHHHHHHHHHHHHHHHHHHTTCSEEEECCSSCC-
T ss_pred hhhcccccccccccccccccccccccccccccccccCCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCC-
Confidence 10 00 0 0001233467899999999999999999999999999999996 4578899998
Q ss_pred CCccccCCCCcchhcHHHHHHHHHHhcCCcEEEEEcccCCCchhhhccccCCCeEEEeccCc-CCCCCC-CCCCCccCCC
Q 041063 195 HHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKF-GDFFPG-TGHIKDVGAG 272 (490)
Q Consensus 195 HHA~~~~a~GFC~~NdvaIAa~~ll~~~~RVliVD~DvHHGdGtqe~Fy~d~~VltiSiH~~-g~ffPg-tG~~~e~G~g 272 (490)
|||++++++||||||||||||++|+++++||+|||||||||||||++||+||+|||+|||++ +.|||+ ||..+|+|.|
T Consensus 177 HHA~~~~a~GFC~fNnvAiAa~~l~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~G~g 256 (362)
T 3men_A 177 HHARVDAAGGFCYLNNAAIAAQALRARHARVAVLDTDMHHGQGIQEIFYARRDVLYVSIHGDPTNFYPAVAGFDDERGAG 256 (362)
T ss_dssp TTCBTTBBBTTBSSCHHHHHHHHHTTTCSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCTTSTTCSSCCTTCCCSG
T ss_pred CCCCCCCCCCccccCHHHHHHHHHHHcCCeEEEEeCcCCCchhHhHHhcCCCCEEEEEecCCCccCCCCCCCccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 479999 9999999999
Q ss_pred CCcceeecccCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEE
Q 041063 273 QGKFYALNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMV 352 (490)
Q Consensus 273 ~G~g~~vNVPL~~G~~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~ 352 (490)
+|++|++|||||+|++|++|+.+|+.++ |++++|+||+||||||||++.+||||+|+||.+||.+|+++|+++++|+++
T Consensus 257 ~g~g~~vNvPL~~g~~d~~yl~~~~~~l-~~l~~f~PdlIvvsaG~Da~~~Dplg~l~lt~~~~~~~~~~l~~~~~~~v~ 335 (362)
T 3men_A 257 EGLGYNVNLPMPHGSSEAAFFERVDDAL-RELRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLPTVI 335 (362)
T ss_dssp GGTTSEEEEEECTTBCHHHHHHHHHHHH-HHHHHHCCSEEEEEECSTTBTTCTTCCBCBCHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCceeEeeccCCCCChHHHHHHHHHHH-HHHHhcCCCEEEEECcccCcCCCCCCCccCCHHHHHHHHHHHHhhCCCEEE
Confidence 9999999999999999999999999976 678999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCchhHHHHHHHHHHHhC
Q 041063 353 LGGGGYTIRNVARCWCYETAVAVG 376 (490)
Q Consensus 353 lleGGY~~~~var~w~~~t~~llg 376 (490)
+|||||+++++++|+......+.+
T Consensus 336 vleGGY~~~~l~~~~~a~l~~l~~ 359 (362)
T 3men_A 336 VQEGGYHIESLEANARSFFGGFGA 359 (362)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTC
T ss_pred EECCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999888875
No 10
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=80.27 E-value=2 Score=39.16 Aligned_cols=61 Identities=15% Similarity=0.160 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCEEEEecCC-CCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEE
Q 041063 289 DESFRGLFRPIIQKVMEVYQPDAVVLQCGA-DSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVL 353 (490)
Q Consensus 289 D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~-Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~l 353 (490)
-...+.-|+..+ -.++||+|||..|. |...+-+........+.+..+++.++..+.+++++
T Consensus 63 t~~~l~r~~~~v----~~~~Pd~vvi~~G~ND~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~iil~ 124 (209)
T 4hf7_A 63 SYQFLLRFREDV----INLSPALVVINAGTNDVAENTGAYNEDYTFGNIASMAELAKANKIKVILT 124 (209)
T ss_dssp HHHHHHHHHHHT----GGGCCSEEEECCCHHHHTTSSSSCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHH----HhcCCCEEEEEeCCCcCccccccccHHHHHHHHHHhhHHHhccCceEEEE
Confidence 344555554432 35899999999998 44444333333444556677787777777776665
No 11
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=67.04 E-value=2.4 Score=35.16 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhh-----HHHHHHHHHhcCCCEEEE
Q 041063 297 RPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKG-----HADCLRFLRSFNVPLMVL 353 (490)
Q Consensus 297 ~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g-----~~~~~~~l~~~~~pvl~l 353 (490)
+++|..++++|.-++=|++++.|...+.++|.+-+...| ..+.+.+|++.++.+=++
T Consensus 34 ~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~v~vEvl 95 (98)
T 3ced_A 34 EPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVL 95 (98)
T ss_dssp HHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred chHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 578888899999999999999999999999999886555 566788888877765444
No 12
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=64.04 E-value=20 Score=31.76 Aligned_cols=58 Identities=10% Similarity=0.224 Sum_probs=35.3
Q ss_pred eecccCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhH----HHHHHHHHhcC
Q 041063 278 ALNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGH----ADCLRFLRSFN 347 (490)
Q Consensus 278 ~vNVPL~~G~~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~----~~~~~~l~~~~ 347 (490)
..|.....+.+...++..++. .+...+||+|||..|.. | +..+.+.| .++++.+++.+
T Consensus 48 v~~~~~~~~~~~~~~~~~~~~----~~~~~~pd~Vvi~~G~N----D----~~~~~~~~~~~l~~ii~~l~~~~ 109 (200)
T 4h08_A 48 VGRLSNSKSVGDPALIEELAV----VLKNTKFDVIHFNNGLH----G----FDYTEEEYDKSFPKLIKIIRKYA 109 (200)
T ss_dssp EEEEEESCCTTCHHHHHHHHH----HHHHSCCSEEEECCCSS----C----TTSCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEeccCCccHHHHHHHHHH----HHhcCCCCeEEEEeeeC----C----CCCCHHHHHHHHHHHHHHHhhhC
Confidence 344444445555555555544 44578999999999975 3 12455544 45666676653
No 13
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=61.73 E-value=20 Score=31.36 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=30.1
Q ss_pred HHHHHhCCCEEEEecCCCCCCCCCCCCcccch----hhHHHHHHHHHhcCCCEEEE
Q 041063 302 KVMEVYQPDAVVLQCGADSLSGDRLGCFNLSV----KGHADCLRFLRSFNVPLMVL 353 (490)
Q Consensus 302 pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~----~g~~~~~~~l~~~~~pvl~l 353 (490)
..+..++||+|||..|..=... ..+. +.+.++++.+++.+.+++++
T Consensus 56 ~~~~~~~pd~Vii~~G~ND~~~------~~~~~~~~~~l~~li~~~~~~~~~vil~ 105 (190)
T 1ivn_A 56 ALLKQHQPRWVLVELGGNDGLR------GFQPQQTEQTLRQILQDVKAANAEPLLM 105 (190)
T ss_dssp HHHHHHCCSEEEEECCTTTTSS------SCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHhcCCCEEEEEeecccccc------CCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 4455689999999999743321 2333 34556777777777666666
No 14
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=59.63 E-value=20 Score=32.28 Aligned_cols=60 Identities=10% Similarity=0.199 Sum_probs=35.1
Q ss_pred ChhHHHHHHHHHHHHHHHH-hCCCEEEEecCC-CCCCCCCCCCcccchhh----HHHHHHHHHhcCCCEEEEc
Q 041063 288 DDESFRGLFRPIIQKVMEV-YQPDAVVLQCGA-DSLSGDRLGCFNLSVKG----HADCLRFLRSFNVPLMVLG 354 (490)
Q Consensus 288 ~D~~yl~~f~~ii~pv~~~-F~PdlIvvsaG~-Da~~gDpLG~~~Lt~~g----~~~~~~~l~~~~~pvl~ll 354 (490)
+-...+..+.. ++.. .+||+|||..|. |..... .-..+.+. +.++++.+++.+.+++++.
T Consensus 55 ~~~~~~~~~~~----~~~~~~~pd~vvi~~G~ND~~~~~---~~~~~~~~~~~~l~~~i~~~~~~~~~vil~~ 120 (240)
T 3mil_A 55 TSRWALKILPE----ILKHESNIVMATIFLGANDACSAG---PQSVPLPEFIDNIRQMVSLMKSYHIRPIIIG 120 (240)
T ss_dssp CHHHHHHHHHH----HHHHCCCEEEEEEECCTTTTSSSS---TTCCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred cHHHHHHHHHH----HhcccCCCCEEEEEeecCcCCccC---CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEc
Confidence 33445555544 3343 699999999998 443211 12234444 4456777777777666664
No 15
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=58.24 E-value=10 Score=33.36 Aligned_cols=68 Identities=13% Similarity=0.295 Sum_probs=37.0
Q ss_pred ecccCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhh----HHHHHHHHHhcCCCEEEEc
Q 041063 279 LNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKG----HADCLRFLRSFNVPLMVLG 354 (490)
Q Consensus 279 vNVPL~~G~~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g----~~~~~~~l~~~~~pvl~ll 354 (490)
+|.-+. |.+-..++..+.. .+..++||+|||..|..=..... + ..+.+. +.++++.+++.+.+++++.
T Consensus 50 ~n~g~~-G~~~~~~~~~~~~----~~~~~~pd~vvi~~G~ND~~~~~-~--~~~~~~~~~~~~~~i~~~~~~~~~vil~~ 121 (204)
T 3p94_A 50 VDRGIS-GQTTSEMLVRFRQ----DVINLKPKAVVILAGINDIAHNN-G--VIALENVFGNLVSMAELAKANHIKVIFCS 121 (204)
T ss_dssp EEEECT-TCCHHHHHHHHHH----HTGGGCEEEEEEECCHHHHTTTT-S--CCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred EEcccC-cccHHHHHHHHHH----HHHhCCCCEEEEEeecCcccccc-C--CCCHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 444443 2333444444433 33458999999999974332211 1 133443 4456677777676776663
No 16
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=55.27 E-value=16 Score=34.49 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCC-CCCCCCCCCCc
Q 041063 291 SFRGLFRPIIQKVMEVYQPDAVVLQCGA-DSLSGDRLGCF 329 (490)
Q Consensus 291 ~yl~~f~~ii~pv~~~F~PdlIvvsaG~-Da~~gDpLG~~ 329 (490)
+.+..+..++.. ...+||+|+|..|. |...+.|++.+
T Consensus 73 ~~~~~~~~~l~~--~~~~pd~V~I~~G~ND~~~~~~~~~~ 110 (274)
T 3bzw_A 73 DVPRQAEKLKKE--HGGEVDAILVFMGTNDYNSSVPIGEW 110 (274)
T ss_dssp GHHHHHHHHHHH--HTTTCCEEEEECCHHHHHTTCCCCCS
T ss_pred HHHHHHHHHHhc--cCCCCCEEEEEEecccCcccCCCccc
Confidence 355555553321 22799999999998 66665566654
No 17
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=53.45 E-value=3.7 Score=33.85 Aligned_cols=56 Identities=21% Similarity=0.395 Sum_probs=45.7
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhh----HHHHHHHHHhcCCCEEEE
Q 041063 298 PIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKG----HADCLRFLRSFNVPLMVL 353 (490)
Q Consensus 298 ~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g----~~~~~~~l~~~~~pvl~l 353 (490)
++|..++.+|.-++=|++++.|...+.++|.|-+...| ..+.+.+|++.++.+=++
T Consensus 38 pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (100)
T 2qsw_A 38 PIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVI 97 (100)
T ss_dssp CHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEES
T ss_pred hHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCEEEEc
Confidence 56788889999999999999999999999998886654 556778888877654333
No 18
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=53.29 E-value=17 Score=31.44 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=34.2
Q ss_pred ChhHHHHHHHHHHHHHHHHhCCCEEEEecCCC-CCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEE
Q 041063 288 DDESFRGLFRPIIQKVMEVYQPDAVVLQCGAD-SLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVL 353 (490)
Q Consensus 288 ~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~D-a~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~l 353 (490)
+-.+.+..+.. .+..++||+|||..|.. ...+-+ ..-..+.+.++++.+++.+.+++++
T Consensus 50 ~~~~~~~~~~~----~~~~~~pd~vvi~~G~ND~~~~~~---~~~~~~~~~~~i~~~~~~~~~vvl~ 109 (185)
T 3hp4_A 50 TSGGALRRLDA----LLEQYEPTHVLIELGANDGLRGFP---VKKMQTNLTALVKKSQAANAMTALM 109 (185)
T ss_dssp CHHHHHHHHHH----HHHHHCCSEEEEECCHHHHHTTCC---HHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cHHHHHHHHHH----HHhhcCCCEEEEEeecccCCCCcC---HHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 33444444443 44568999999999963 322211 1112234455777777777677666
No 19
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=49.69 E-value=20 Score=37.07 Aligned_cols=70 Identities=19% Similarity=0.299 Sum_probs=44.4
Q ss_pred ccCCCCCCh-hHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCC
Q 041063 281 VPLNDGLDD-ESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGY 358 (490)
Q Consensus 281 VPL~~G~~D-~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY 358 (490)
|||-..+.. .++...|++.+ |-+.+|+-..|||-.|--++..+- .+...+-+..+++.+..+++|-|||-
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~-~yi~~~~~~~iViK~GG~~l~~~~-------~~~~~~~i~~l~~~g~~vvlVhggg~ 85 (456)
T 3d2m_A 15 VPRGSHMNAPDSFVAHFREAA-PYIRQMRGTTLVAGIDGRLLEGGT-------LNKLAADIGLLSQLGIRLVLIHGAYH 85 (456)
T ss_dssp ----------CCHHHHHHHHH-HHHHHHTTCEEEEEECGGGGTSTH-------HHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred CcCcccCCchhHHHHHHHHhH-HHHHHhcCCEEEEEEChHHhcCch-------HHHHHHHHHHHHHCCCeEEEEeCCcH
Confidence 344444444 57888998875 888999999999999988876421 23344445555566777777777773
No 20
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=49.28 E-value=29 Score=29.83 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=35.1
Q ss_pred ecccCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHH----HHHHHHhcCCCEEEEc
Q 041063 279 LNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHAD----CLRFLRSFNVPLMVLG 354 (490)
Q Consensus 279 vNVPL~~G~~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~----~~~~l~~~~~pvl~ll 354 (490)
+|.... |.+-..++..+.. .+...+||+|||+.|..=... ....+.+.|.. +++.++ +.+++++.
T Consensus 43 ~n~g~~-G~~~~~~~~~~~~----~~~~~~pd~vvi~~G~ND~~~----~~~~~~~~~~~~l~~~i~~~~--~~~vi~~~ 111 (195)
T 1yzf_A 43 INAGMP-GDTTEDGLKRLNK----EVLIEKPDEVVIFFGANDASL----DRNITVATFRENLETMIHEIG--SEKVILIT 111 (195)
T ss_dssp EEEECT-TCCHHHHHHHHHH----HTGGGCCSEEEEECCTTTTCT----TSCCCHHHHHHHHHHHHHHHC--GGGEEEEC
T ss_pred EeCCCC-CCCHHHHHHHHHH----hhhhcCCCEEEEEeeccccCc----cCCCCHHHHHHHHHHHHHHhc--CCEEEEEc
Confidence 444433 3333444444443 334589999999999744331 12345555543 444444 56666664
No 21
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=46.31 E-value=27 Score=30.91 Aligned_cols=49 Identities=12% Similarity=0.197 Sum_probs=30.7
Q ss_pred HHHHHhCC-CEEEEecCCCCCCCCCCCCcccchhh----HHHHHHHHHhcC---------CCEEEEc
Q 041063 302 KVMEVYQP-DAVVLQCGADSLSGDRLGCFNLSVKG----HADCLRFLRSFN---------VPLMVLG 354 (490)
Q Consensus 302 pv~~~F~P-dlIvvsaG~Da~~gDpLG~~~Lt~~g----~~~~~~~l~~~~---------~pvl~ll 354 (490)
..+..++| |+|||..|..=.. ..+..+.+. +.++++.+++.+ .+++++.
T Consensus 76 ~~l~~~~p~d~vvi~~G~ND~~----~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~P~~~iil~~ 138 (216)
T 2q0q_A 76 SCLATHLPLDLVIIMLGTNDTK----AYFRRTPLDIALGMSVLVTQVLTSAGGVGTTYPAPKVLVVS 138 (216)
T ss_dssp HHHHHHCSCSEEEEECCTGGGS----GGGCCCHHHHHHHHHHHHHHHHTCTTTTTBCCCCCEEEEEE
T ss_pred HHHHhCCCCCEEEEEecCcccc----hhcCCCHHHHHHHHHHHHHHHHHhcccccccCCCCeEEEEe
Confidence 34566898 9999999984322 112345544 455677777666 5666663
No 22
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=43.48 E-value=45 Score=30.27 Aligned_cols=41 Identities=12% Similarity=0.275 Sum_probs=25.9
Q ss_pred HHHHHhCC-CEEEEecCCCCCCCCCCCCcccchhhH----HHHHHHHHhc
Q 041063 302 KVMEVYQP-DAVVLQCGADSLSGDRLGCFNLSVKGH----ADCLRFLRSF 346 (490)
Q Consensus 302 pv~~~F~P-dlIvvsaG~Da~~gDpLG~~~Lt~~g~----~~~~~~l~~~ 346 (490)
..+..++| |+|||..|..=.. .....+.+.| .++++.+++.
T Consensus 94 ~~l~~~~p~d~VvI~~GtND~~----~~~~~~~~~~~~~l~~li~~ir~~ 139 (232)
T 3dci_A 94 VALSCHMPLDLVIIMLGTNDIK----PVHGGRAEAAVSGMRRLAQIVETF 139 (232)
T ss_dssp HHHHHHCSCSEEEEECCTTTTS----GGGTSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhCCCCCEEEEEeccCCCc----cccCCCHHHHHHHHHHHHHHHHHh
Confidence 44567899 9999999964332 2222355444 4566777764
No 23
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=43.41 E-value=17 Score=33.01 Aligned_cols=47 Identities=19% Similarity=0.317 Sum_probs=28.2
Q ss_pred HHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhc--CCCEEEEc
Q 041063 304 MEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSF--NVPLMVLG 354 (490)
Q Consensus 304 ~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~--~~pvl~ll 354 (490)
+..++||+|||..|..=.. ....-..+.+.++++.+++. +.+++++.
T Consensus 89 l~~~~pd~vvi~~G~ND~~----~~~~~~~~~l~~~i~~l~~~~p~~~ii~~~ 137 (232)
T 1es9_A 89 LEHIRPKIVVVWVGTNNHG----HTAEQVTGGIKAIVQLVNERQPQARVVVLG 137 (232)
T ss_dssp TTTCCCSEEEEECCTTCTT----SCHHHHHHHHHHHHHHHHHHSTTCEEEEEC
T ss_pred cccCCCCEEEEEeecCCCC----CCHHHHHHHHHHHHHHHHHHCCCCeEEEec
Confidence 3457999999999984332 11111234455677777765 55666653
No 24
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=43.29 E-value=5.2 Score=32.99 Aligned_cols=56 Identities=25% Similarity=0.478 Sum_probs=45.8
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhh----HHHHHHHHHhcCCCEEEE
Q 041063 298 PIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKG----HADCLRFLRSFNVPLMVL 353 (490)
Q Consensus 298 ~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g----~~~~~~~l~~~~~pvl~l 353 (490)
++|..++++|.-++=|++++.|...+.++|.|-+...| ..+.+.+|++.++.+=++
T Consensus 38 pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (101)
T 2qrr_A 38 PLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKVEVL 97 (101)
T ss_dssp CHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCCEEEEe
Confidence 56788889999999999999999999999998886654 456778888877655444
No 25
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=43.12 E-value=7.9 Score=32.29 Aligned_cols=54 Identities=13% Similarity=0.359 Sum_probs=44.7
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhh----HHHHHHHHHhcCCCEE
Q 041063 298 PIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKG----HADCLRFLRSFNVPLM 351 (490)
Q Consensus 298 ~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g----~~~~~~~l~~~~~pvl 351 (490)
++|..++++|.-++=|++++.|...+.++|.+-+...| ..+.+.+|++.++.+=
T Consensus 36 PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vE 93 (106)
T 3dhx_A 36 PLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVE 93 (106)
T ss_dssp CHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCCEEE
Confidence 57788889999999999999999999999998776654 5567788888776543
No 26
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=42.50 E-value=51 Score=32.16 Aligned_cols=58 Identities=28% Similarity=0.412 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEecCCC-CCCCCCCCCcccchhhHHHHHHHHHhcC--CCEEEEcC
Q 041063 290 ESFRGLFRPIIQKVMEVYQPDAVVLQCGAD-SLSGDRLGCFNLSVKGHADCLRFLRSFN--VPLMVLGG 355 (490)
Q Consensus 290 ~~yl~~f~~ii~pv~~~F~PdlIvvsaG~D-a~~gDpLG~~~Lt~~g~~~~~~~l~~~~--~pvl~lle 355 (490)
++...+|+.++. .+++.+||+||+ || | .. -....+.+....+.++++.+. +|++++.|
T Consensus 44 ~~~~~~l~~lv~-~~~~~~~D~vli-aG-D~l~-----d~~~~~~~~~~~~~~~l~~L~~~~pv~~i~G 104 (336)
T 2q8u_A 44 EELKKALDKVVE-EAEKREVDLILL-TG-DLLH-----SRNNPSVVALHDLLDYLKRMMRTAPVVVLPG 104 (336)
T ss_dssp HHHHHHHHHHHH-HHHHHTCSEEEE-ES-CSBS-----CSSCCCHHHHHHHHHHHHHHHHHSCEEECCC
T ss_pred HHHHHHHHHHHH-HHHHhCCCEEEE-CC-cccc-----CCCCCCHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 455677887774 556779998876 33 3 22 111223333334445554443 78777643
No 27
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=42.33 E-value=21 Score=32.16 Aligned_cols=58 Identities=22% Similarity=0.241 Sum_probs=36.5
Q ss_pred ChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhc--CCCEEEE
Q 041063 288 DDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSF--NVPLMVL 353 (490)
Q Consensus 288 ~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~--~~pvl~l 353 (490)
+-.+++..+.. .+..++||+|||+.|..=... ....+.+.+..+++.+++. +.+++++
T Consensus 67 ~~~~~~~~l~~----~l~~~~pd~vvi~~G~ND~~~----~~~~~~~~l~~li~~i~~~~p~~~ii~~ 126 (215)
T 2vpt_A 67 TIPQIASNINN----WLNTHNPDVVFLWIGGNDLLL----NGNLNATGLSNLIDQIFTVKPNVTLFVA 126 (215)
T ss_dssp CHHHHHHHHHH----HHHHHCCSEEEEECCHHHHHH----HCCCCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred hHHHHHHHHHH----HhhccCCCEEEEEccccccCC----CCChhHHHHHHHHHHHHHhCCCCEEEEE
Confidence 33445554443 334689999999999742211 1223467888899998876 4555554
No 28
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=41.84 E-value=7.9 Score=34.18 Aligned_cols=51 Identities=16% Similarity=0.151 Sum_probs=29.0
Q ss_pred HHHhCCCEEEEecCC-CCCCCCCCCC---cccchhhH----HHHHHHHHhcCCCEEEEc
Q 041063 304 MEVYQPDAVVLQCGA-DSLSGDRLGC---FNLSVKGH----ADCLRFLRSFNVPLMVLG 354 (490)
Q Consensus 304 ~~~F~PdlIvvsaG~-Da~~gDpLG~---~~Lt~~g~----~~~~~~l~~~~~pvl~ll 354 (490)
+...+||+|||+.|. |.....+.+. ...+.+.| .++++.+++.+.+++++.
T Consensus 79 ~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vil~~ 137 (216)
T 3rjt_A 79 VMALQPDYVSLMIGVNDVWRQFDMPLVVERHVGIDEYRDTLRHLVATTKPRVREMFLLS 137 (216)
T ss_dssp TGGGCCSEEEEECCHHHHHHHHHSTTCGGGCCCHHHHHHHHHHHHHHHGGGSSEEEEEC
T ss_pred HhhcCCCEEEEEeeccccchhhccccccccCCCHHHHHHHHHHHHHHHHhcCCeEEEEC
Confidence 446899999999996 3322111010 12334444 456666666677777663
No 29
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=39.58 E-value=73 Score=28.23 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCC
Q 041063 296 FRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYT 359 (490)
Q Consensus 296 f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~ 359 (490)
++.++. .+.+.+||+||+. | |.. ......+.+.++.+.+++.+.|++++. |--.
T Consensus 21 ~~~~~~-~~~~~~~D~vi~~-G-Dl~------~~~~~~~~~~~~~~~l~~~~~pv~~v~-GNHD 74 (228)
T 1uf3_A 21 LEKFVK-LAPDTGADAIALI-G-NLM------PKAAKSRDYAAFFRILSEAHLPTAYVP-GPQD 74 (228)
T ss_dssp HHHHHT-HHHHHTCSEEEEE-S-CSS------CTTCCHHHHHHHHHHHGGGCSCEEEEC-CTTS
T ss_pred HHHHHH-HHhhcCCCEEEEC-C-CCC------CCCCCHHHHHHHHHHHHhcCCcEEEEC-CCCC
Confidence 444443 3445599987653 3 222 111234556677777877788987775 5433
No 30
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=38.28 E-value=55 Score=32.80 Aligned_cols=58 Identities=19% Similarity=0.359 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhc---CCCEEEEcC
Q 041063 290 ESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSF---NVPLMVLGG 355 (490)
Q Consensus 290 ~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~---~~pvl~lle 355 (490)
.+...+|+.++. .+.+-+||+||+ || |.. ....-+.+.+..+.+.++.+ ++|++++.|
T Consensus 43 ~~~~~~l~~~v~-~~~~~~~D~Vli-aG-Dl~-----d~~~p~~~~~~~~~~~l~~L~~~~~pv~~v~G 103 (386)
T 3av0_A 43 KDIYDSFKLCIK-KILEIKPDVVLH-SG-DLF-----NDLRPPVKALRIAMQAFKKLHENNIKVYIVAG 103 (386)
T ss_dssp HHHHHHHHHHHH-HHHTTCCSEEEE-CS-CSB-----SSSSCCHHHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred HHHHHHHHHHHH-HHHHcCCCEEEE-CC-CCC-----CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEcC
Confidence 345677877775 445689999886 33 322 12222334444455555444 788877754
No 31
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=37.81 E-value=93 Score=30.29 Aligned_cols=58 Identities=17% Similarity=0.333 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHH---HHHHHHhcCCCEEEEcC
Q 041063 290 ESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHAD---CLRFLRSFNVPLMVLGG 355 (490)
Q Consensus 290 ~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~---~~~~l~~~~~pvl~lle 355 (490)
+++..+|+.++. .+.+.+||+||+. | |..- ..+-+.+.+.. .++.++..++|++++.|
T Consensus 23 ~~~~~~~~~~~~-~~~~~~~D~vl~~-G-Dl~d-----~~~~~~~~~~~~~~~l~~l~~~~~~v~~v~G 83 (333)
T 1ii7_A 23 EEFAEAFKNALE-IAVQENVDFILIA-G-DLFH-----SSRPSPGTLKKAIALLQIPKEHSIPVFAIEG 83 (333)
T ss_dssp HHHHHHHHHHHH-HHHHTTCSEEEEE-S-CSBS-----SSSCCHHHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred HHHHHHHHHHHH-HHHhcCCCEEEEC-C-CcCC-----CCCCCHHHHHHHHHHHHHHHHCCCcEEEeCC
Confidence 456677877774 5667899988764 3 3221 11123333333 44444455789887753
No 32
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=36.56 E-value=39 Score=32.65 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCC
Q 041063 291 SFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSG 323 (490)
Q Consensus 291 ~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~g 323 (490)
.+...+...|..++++|+||+||.-.|.|.|.+
T Consensus 131 ~~~~~l~~~l~~~ir~~~PdvV~t~~~~d~HpD 163 (273)
T 3dff_A 131 DLVGEVADDIRSIIDEFDPTLVVTCAAIGEHPD 163 (273)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEECCTTCCHH
T ss_pred chHHHHHHHHHHHHHHcCCCEEEECCCCCCChH
Confidence 345566666778999999999999888776644
No 33
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=36.53 E-value=81 Score=30.72 Aligned_cols=63 Identities=13% Similarity=0.340 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCC
Q 041063 290 ESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYT 359 (490)
Q Consensus 290 ~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~ 359 (490)
.++...|.+.+ |-+.+|+-..|||-.|-.++..+. ..+.+.+-+..+++.+.++++|-|||-.
T Consensus 8 ~~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vVlVhGgG~~ 70 (300)
T 2buf_A 8 AQVAKVLSEAL-PYIRRFVGKTLVIKYGGNAMESEE------LKAGFARDVVLMKAVGINPVVVHGGGPQ 70 (300)
T ss_dssp HHHHHHHHHHH-HHHHHHTTCEEEEEECCTTTTSSH------HHHHHHHHHHHHHHTTCEEEEEECCCHH
T ss_pred HHHHHHHHHHh-HHHHHhcCCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCeEEEEECCcHH
Confidence 36778888876 778899999999999988876531 1223344444556667788888888654
No 34
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=35.74 E-value=37 Score=34.21 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=31.1
Q ss_pred HHHHHHHhCC-CEEEEecCCCCCCCCCCCCcccchh----hHHHHHHHHHhcCCCEEEE
Q 041063 300 IQKVMEVYQP-DAVVLQCGADSLSGDRLGCFNLSVK----GHADCLRFLRSFNVPLMVL 353 (490)
Q Consensus 300 i~pv~~~F~P-dlIvvsaG~Da~~gDpLG~~~Lt~~----g~~~~~~~l~~~~~pvl~l 353 (490)
+.+++..++| |+|||+.|..=... ....+.+ .+.++++.+++.+.+++++
T Consensus 221 l~~~l~~~~p~d~VvI~~G~ND~~~----~~~~~~~~~~~~l~~ii~~lr~~~a~vilv 275 (375)
T 2o14_A 221 LEAILKYIKPGDYFMLQLGINDTNP----KHKESEAEFKEVMRDMIRQVKAKGADVILS 275 (375)
T ss_dssp HHHHHTTCCTTCEEEEECCTGGGCG----GGCCCHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHhCCCCCEEEEEEEccCCCc----cCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3455677899 99999999732221 1122343 4455677777666666655
No 35
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=34.45 E-value=47 Score=32.01 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCC
Q 041063 291 SFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGD 324 (490)
Q Consensus 291 ~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gD 324 (490)
.+...+...|..++++++||+||.-.|.|.|.+.
T Consensus 128 ~~~~~~~~~l~~~ir~~~PdvV~t~~~~d~HpDH 161 (270)
T 3dfi_A 128 DLVAAIREDIESMIAECDPTLVLTCVAIGKHPDH 161 (270)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEECCTTCCHHH
T ss_pred chHHHHHHHHHHHHHHcCCCEEEeCCCCCCChhH
Confidence 3445566667789999999999998887766443
No 36
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=33.61 E-value=46 Score=32.44 Aligned_cols=66 Identities=20% Similarity=0.346 Sum_probs=44.2
Q ss_pred CChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCC
Q 041063 287 LDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYT 359 (490)
Q Consensus 287 ~~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~ 359 (490)
+...++...|.+.+ |-+.+|+-..|||-.|--++.... ..+.+.+.+..+++.+.++++|-|||-.
T Consensus 4 ~~~~~~~~~~~~a~-pyi~~~~~k~iViKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vViVhGgG~~ 69 (299)
T 2ap9_A 4 LPTHIKAQVLAEAL-PWLKQLHGKVVVVKYGGNAMTDDT------LRRAFAADMAFLRNCGIHPVVVHGGGPQ 69 (299)
T ss_dssp SCHHHHHHHHHHHH-HHHHHHTTCEEEEEECTHHHHSHH------HHHHHHHHHHHHHTTTCEEEEEECCSHH
T ss_pred CChhhHHHHHHHHH-HHHHHhCCCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCcEEEEECCcHH
Confidence 45678888898876 788999999999999966554320 1122334444555567777777777654
No 37
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=33.20 E-value=1.9e+02 Score=28.85 Aligned_cols=116 Identities=11% Similarity=0.093 Sum_probs=0.0
Q ss_pred hhcHHHHHHHHHHhcCCcEEEEEcccCCCch----------------hhhccccCCCeEEEeccCcCCCCCCCCCCCccC
Q 041063 207 YVNDIVLGILELLKVHRRVLYVDIDVHHGDG----------------VEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVG 270 (490)
Q Consensus 207 ~~NdvaIAa~~ll~~~~RVliVD~DvHHGdG----------------tqe~Fy~d~~VltiSiH~~g~ffPgtG~~~e~G 270 (490)
++..+--.+..+.+..=.|+ +|+|+-.| +.+.|.+.+.++.+++
T Consensus 85 ~l~~ld~~v~~a~~~GiyVI---lDlH~~~g~~~~~~~~~~~~~w~~iA~ryk~~~~~Vi~el----------------- 144 (345)
T 3jug_A 85 DIDTVREVIELAEQNKMVAV---VEVHDATGRDSRSDLDRAVDYWIEMKDALIGKEDTVIINI----------------- 144 (345)
T ss_dssp CHHHHHHHHHHHHTTTCEEE---EEECTTTTCCCHHHHHHHHHHHHHTHHHHTTCTTTEEEEC-----------------
T ss_pred HHHHHHHHHHHHHHCCCEEE---EEeccCCCCCcHHHHHHHHHHHHHHHHHHcCCCCeEEEEe-----------------
Q ss_pred CCCCcceeecccCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCC--------------CCCCCcccchhhH
Q 041063 271 AGQGKFYALNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSG--------------DRLGCFNLSVKGH 336 (490)
Q Consensus 271 ~g~G~g~~vNVPL~~G~~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~g--------------DpLG~~~Lt~~g~ 336 (490)
.|=|.. ..+...|...++.++ ..+++-.|+.+|+..|..-... ||...+-++..-|
T Consensus 145 --------~NEP~~-~~~~~~w~~~~~~~i-~~IR~~dp~~~Iiv~g~~w~~~~~~~~~~~~~~~~~dp~~nlvys~H~Y 214 (345)
T 3jug_A 145 --------ANEWYG-SWDGAAWADGYIDVI-PKLRDAGLTHTLMVDAAGWGQYPQSIHDYGQDVFNADPLKNTIFSIHMY 214 (345)
T ss_dssp --------CTTCCC-SSCHHHHHHHHHHHH-HHHHHTTCCSCEEEECBTTTTBTHHHHHHHHHHHHTCTTCCEEEEEEES
T ss_pred --------cCCCCC-CCCHHHHHHHHHHHH-HHHHhhCCCCEEEEeCCCccccchhhccchhhhcccCCccceEEEEEec
Q ss_pred ----------HHHHHHHHhcCCCEEE
Q 041063 337 ----------ADCLRFLRSFNVPLMV 352 (490)
Q Consensus 337 ----------~~~~~~l~~~~~pvl~ 352 (490)
..-++.++..++|+++
T Consensus 215 ~~~g~~~~~~~~~~~~~~~~g~Pv~i 240 (345)
T 3jug_A 215 EYAGGDANTVRSNIDRVIDQDLALVI 240 (345)
T ss_dssp TTTTSSHHHHHHHHHHHHTTTCCEEE
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEE
No 38
>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A*
Probab=32.56 E-value=3.3e+02 Score=25.88 Aligned_cols=30 Identities=10% Similarity=0.242 Sum_probs=20.6
Q ss_pred ChhHHHHHHHHHHHHHHHHhCCCEEEEecCC
Q 041063 288 DDESFRGLFRPIIQKVMEVYQPDAVVLQCGA 318 (490)
Q Consensus 288 ~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~ 318 (490)
+.+.+...++.++ ..+++..|+.+|+..|.
T Consensus 150 ~~~~~~~~~~~~~-~~IR~~dp~~~i~v~~~ 179 (320)
T 3nco_A 150 TPTKWNELYPKVL-GEIRKTNPSRIVIIDVP 179 (320)
T ss_dssp CHHHHHHHHHHHH-HHHHHHCSSCCEEEECS
T ss_pred CHHHHHHHHHHHH-HHHHhcCCCcEEEECCC
Confidence 3456666676666 66788899977766543
No 39
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=31.98 E-value=1.2e+02 Score=32.09 Aligned_cols=56 Identities=21% Similarity=0.302 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEec-CCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCCCc
Q 041063 295 LFRPIIQKVMEVYQPDAVVLQC-GADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIR 361 (490)
Q Consensus 295 ~f~~ii~pv~~~F~PdlIvvsa-G~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~ 361 (490)
.+...|..+.+.|+|++|+|.. ..-...||.+. .+++.++. ++||+.+--.||.-.
T Consensus 72 kL~~aI~~~~~~~~P~~I~V~tTC~~elIGdDi~----------~v~~~~~~-~~pVi~v~tpgf~g~ 128 (525)
T 3aek_B 72 LLKDALAAAHARYKPQAMAVALTCTAELLQDDPN----------GISRALNL-PVPVVPLELPSYSRK 128 (525)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEECTTGGGSCCCHH----------HHHHHHTC-SSCEEECCCCTTTCC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcHHHHhcccHH----------HHHHHhcC-CCCEEEEECCCcCCc
Confidence 4455666777899999666554 47777777432 24444444 788888888888864
No 40
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=29.07 E-value=53 Score=33.44 Aligned_cols=52 Identities=12% Similarity=0.183 Sum_probs=32.3
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhc--CCCEEEEc
Q 041063 301 QKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSF--NVPLMVLG 354 (490)
Q Consensus 301 ~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~--~~pvl~ll 354 (490)
..++..++||+|||.+|..=...+ + ...--.+.+..+++.+++. +.||+++.
T Consensus 237 ~~~l~~~~pdlVvI~lGtND~~~~-~-~~~~~~~~l~~li~~ir~~~P~a~Illv~ 290 (385)
T 3skv_A 237 ARLIRDLPADLISLRVGTSNFMDG-D-GFVDFPANLVGFVQIIRERHPLTPIVLGS 290 (385)
T ss_dssp HHHHHHSCCSEEEEEESHHHHTTT-C-CTTTHHHHHHHHHHHHHTTCSSSCEEEEE
T ss_pred HHHHhccCCCEEEEEeeccCCCCC-C-CHHHHHHHHHHHHHHHHHHCCCCcEEEEc
Confidence 344567899999999997543322 1 1112234556678888765 56777664
No 41
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=28.22 E-value=44 Score=30.31 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=14.9
Q ss_pred hcCCcEEEEEcccCCCch
Q 041063 220 KVHRRVLYVDIDVHHGDG 237 (490)
Q Consensus 220 ~~~~RVliVD~DvHHGdG 237 (490)
+...||++||.|..+|+=
T Consensus 29 ~~g~~VlliD~D~~~~~l 46 (237)
T 1g3q_A 29 DRGRKVLAVDGDLTMANL 46 (237)
T ss_dssp HTTCCEEEEECCTTSCCH
T ss_pred hcCCeEEEEeCCCCCCCh
Confidence 456899999999988763
No 42
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=28.22 E-value=42 Score=30.22 Aligned_cols=48 Identities=19% Similarity=0.199 Sum_probs=31.4
Q ss_pred hCCCEEEEecCC-CCCCCCCCCCccc-ch----hhHHHHHHHHHhc--CCCEEEEc
Q 041063 307 YQPDAVVLQCGA-DSLSGDRLGCFNL-SV----KGHADCLRFLRSF--NVPLMVLG 354 (490)
Q Consensus 307 F~PdlIvvsaG~-Da~~gDpLG~~~L-t~----~g~~~~~~~l~~~--~~pvl~ll 354 (490)
.+||+|||..|. |...+-+++.+.- +. ..+.++++.++.. +.+++++.
T Consensus 81 ~~pd~Vii~~G~ND~~~~~~~~~~~~~~~~~f~~~l~~li~~l~~~~P~~~iil~~ 136 (232)
T 3dc7_A 81 EDADFIAVFGGVNDYGRDQPLGQYGDCDMTTFYGALMMLLTGLQTNWPTVPKLFIS 136 (232)
T ss_dssp TTCSEEEEECCHHHHHTTCCCCCTTCCSTTSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCCCEEEEEEeccccccCcCCccccccchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 499999999997 4444445554431 11 2556677888766 67777653
No 43
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=26.92 E-value=44 Score=30.35 Aligned_cols=20 Identities=35% Similarity=0.311 Sum_probs=16.0
Q ss_pred hc-CCcEEEEEcccCCCchhh
Q 041063 220 KV-HRRVLYVDIDVHHGDGVE 239 (490)
Q Consensus 220 ~~-~~RVliVD~DvHHGdGtq 239 (490)
+. .+||++||+|..+|+=+.
T Consensus 31 ~~~g~~VlliD~D~~~~~l~~ 51 (245)
T 3ea0_A 31 QEPDIHVLAVDISLPFGDLDM 51 (245)
T ss_dssp TSTTCCEEEEECCTTTCCGGG
T ss_pred hCcCCCEEEEECCCCCCCHHH
Confidence 44 789999999999877544
No 44
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=26.43 E-value=1.2e+02 Score=31.07 Aligned_cols=69 Identities=10% Similarity=0.089 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhCCCEEEEec-CCCCCCCCCCCCcccchhhHHHHHHHHH-hcCCCEEEEcCCCCCCchhHHHHHHHHHH
Q 041063 296 FRPIIQKVMEVYQPDAVVLQC-GADSLSGDRLGCFNLSVKGHADCLRFLR-SFNVPLMVLGGGGYTIRNVARCWCYETAV 373 (490)
Q Consensus 296 f~~ii~pv~~~F~PdlIvvsa-G~Da~~gDpLG~~~Lt~~g~~~~~~~l~-~~~~pvl~lleGGY~~~~var~w~~~t~~ 373 (490)
++..|..+.+.|+|++|+|.. ..-...||. +..+.+.+. +.++||+.+--.||.-. ....|......
T Consensus 85 L~~~i~~~~~~~~P~~I~v~~TC~~~iIGdD----------i~~v~~~~~~~~~ipVi~v~~~Gf~~~-~~~G~~~a~~a 153 (460)
T 2xdq_A 85 LKRLCLEIKRDRNPSVIVWIGTCTTEIIKMD----------LEGLAPKLEAEIGIPIVVARANGLDYA-FTQGEDTVLAA 153 (460)
T ss_dssp HHHHHHHHHHHHCCSEEEEEECHHHHHTTCC----------HHHHHHHHHHHHSSCEEEEECCTTTCC-TTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCCHHHHHhhC----------HHHHHHHHhhccCCcEEEEecCCcccc-HHHHHHHHHHH
Confidence 466677888999999876654 344445553 233555554 45999999999998853 44555444444
Q ss_pred Hh
Q 041063 374 AV 375 (490)
Q Consensus 374 ll 375 (490)
++
T Consensus 154 l~ 155 (460)
T 2xdq_A 154 MA 155 (460)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 45
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=26.31 E-value=1.2e+02 Score=30.24 Aligned_cols=58 Identities=28% Similarity=0.369 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCC-CCcccchhhHHHH---HHHHHhcCCCEEEEcC
Q 041063 289 DESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRL-GCFNLSVKGHADC---LRFLRSFNVPLMVLGG 355 (490)
Q Consensus 289 D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpL-G~~~Lt~~g~~~~---~~~l~~~~~pvl~lle 355 (490)
.+++..+|+.++ .++.+.+||+||+ + ||-. -.-+.+.+.+..+ +..|... +|++++.|
T Consensus 25 ~~~~~~~l~~l~-~~~~~~~~D~vli-a------GDl~hd~~~~~~~~~~~~~~~l~~l~~~-~~v~~i~G 86 (379)
T 3tho_B 25 REELKKALDKVV-EEAEKREVDLILL-T------GDLLHSRNNPSVVALHDLLDYLKRMMRT-APVVVLPG 86 (379)
T ss_dssp HHHHHHHHHHHH-HHHHHHTCSEEEE-C------SCCBSCSSSCCHHHHHHHHHHHHHHHHH-SCEEECCC
T ss_pred hHHHHHHHHHHH-HHHHhcCCCEEEE-C------CCccccCCCCCHHHHHHHHHHHHHHHhC-CCEEEEcC
Confidence 345677777766 5567889999988 3 3432 2223344444444 4444444 78777643
No 46
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=26.22 E-value=50 Score=30.32 Aligned_cols=20 Identities=5% Similarity=0.094 Sum_probs=15.7
Q ss_pred HhcCCcEEEEEcccCCCchh
Q 041063 219 LKVHRRVLYVDIDVHHGDGV 238 (490)
Q Consensus 219 l~~~~RVliVD~DvHHGdGt 238 (490)
.+...||++||.|..+|+=+
T Consensus 28 a~~g~~VlliD~D~~~~~~~ 47 (260)
T 3q9l_A 28 AQKGKKTVVIDFAIGLRNLD 47 (260)
T ss_dssp HHTTCCEEEEECCCSSCCHH
T ss_pred HhCCCcEEEEECCCCCCChh
Confidence 34568999999999887633
No 47
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=26.14 E-value=45 Score=30.26 Aligned_cols=41 Identities=17% Similarity=0.375 Sum_probs=27.0
Q ss_pred HHhCCCEEEEecCCCCCCCCCCCCcccchh----hHHHHHHHHHhc--CCCEEEE
Q 041063 305 EVYQPDAVVLQCGADSLSGDRLGCFNLSVK----GHADCLRFLRSF--NVPLMVL 353 (490)
Q Consensus 305 ~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~----g~~~~~~~l~~~--~~pvl~l 353 (490)
..++||+|||..|..=. | .+.+ .+..+++.+++. +.+++++
T Consensus 91 ~~~~pd~vvi~~G~ND~-----~---~~~~~~~~~l~~~i~~l~~~~p~~~iil~ 137 (229)
T 1fxw_F 91 ENIKPKVIVVWVGTNNH-----E---NTAEEVAGGIEAIVQLINTRQPQAKIIVL 137 (229)
T ss_dssp SSCCCSEEEEECCTTCT-----T---SCHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred ccCCCCEEEEEEecCCC-----C---CCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 45799999999997543 2 3443 445567777665 5566665
No 48
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=25.54 E-value=68 Score=28.58 Aligned_cols=36 Identities=28% Similarity=0.469 Sum_probs=22.0
Q ss_pred eecccCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecC
Q 041063 278 ALNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCG 317 (490)
Q Consensus 278 ~vNVPL~~G~~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG 317 (490)
++|| .|.++.....-.+ .|..++++.+||+|.+|=-
T Consensus 18 s~Ni---~g~~~~~~~~r~~-~i~~~i~~~~pDIi~LQEv 53 (256)
T 4fva_A 18 SWNI---DGLDGRSLLTRMK-AVAHIVKNVNPDILFLQEV 53 (256)
T ss_dssp EEEC---CTTCCTTHHHHHH-HHHHHHHHHCCSEEEEEEE
T ss_pred EEec---CCCCCcCHHHHHH-HHHHHHHHcCCCEEEEEec
Confidence 4555 2333333333333 3456778999999999963
No 49
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A
Probab=24.89 E-value=2.8e+02 Score=26.94 Aligned_cols=62 Identities=16% Similarity=0.261 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCC------CCCCCCCCC--Ccccchh--------hHHHHHHHHHhcCCCEEEE
Q 041063 291 SFRGLFRPIIQKVMEVYQPDAVVLQCGA------DSLSGDRLG--CFNLSVK--------GHADCLRFLRSFNVPLMVL 353 (490)
Q Consensus 291 ~yl~~f~~ii~pv~~~F~PdlIvvsaG~------Da~~gDpLG--~~~Lt~~--------g~~~~~~~l~~~~~pvl~l 353 (490)
.+...++.++ ..+++..|+.+|+..|. +....+|+. ...++.. .+...++.++..+.|+++-
T Consensus 174 ~~~~~~~~~~-~~IR~~dp~~~I~v~~~~w~~~~~~~~~~~~~~~n~v~s~H~Y~~~~~~~~~~~~~~~~~~g~Pv~ig 251 (327)
T 3pzt_A 174 DIKPYAEEVI-SVIRKNDPDNIIIVGTGTWSQDVNDAADDQLKDANVMYALHFYAGTHGQFLRDKANYALSKGAPIFVT 251 (327)
T ss_dssp THHHHHHHHH-HHHHHHCSSSCEEECCHHHHTCHHHHHTSCCCCTTEEEEEEEETTTCCHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHH-HHHHhhCCCCEEEEeCCcccccchhhhhCCCCCCCeEEEEEecCCCchHHHHHHHHHHHHcCCcEEEE
Confidence 4555555555 67788999876665552 111234443 2222322 3344556667778887765
No 50
>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A*
Probab=24.81 E-value=1.4e+02 Score=30.62 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=55.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchh----hHHHHHHHHHhcCCCEEEEcCCC
Q 041063 286 GLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVK----GHADCLRFLRSFNVPLMVLGGGG 357 (490)
Q Consensus 286 G~~D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~----g~~~~~~~l~~~~~pvl~lleGG 357 (490)
.++.+.++...+.++..=+.+...+.|+|-.|......|.+|.|....+ |...+++.+++.+.++-+=.+-|
T Consensus 25 ~~~e~~i~~~ad~~~~~gl~~~G~~~~~iDdgW~~~~~d~~G~~~~~~~kFP~Gl~~l~~~i~~~Glk~Giw~~~g 100 (417)
T 1szn_A 25 DIDESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGRVDGHIAPNATRFPDGIDGLAKKVHALGLKLGIYSTAG 100 (417)
T ss_dssp CCCHHHHHHHHHHHHHTTHHHHTCCEEECCSSCBCTTCCBTTBCCBCTTTCTTHHHHHHHHHHHTTCEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHcCchhhCCCEEEECCCccCCCCCCCCCEEECcccCCcCHHHHHHHHHHcCCEEEEEeCCC
Confidence 4567777777776655445678899999999999888888999877765 88999999999887754433333
No 51
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=24.80 E-value=55 Score=30.28 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=14.8
Q ss_pred hcCCcEEEEEcccCCCch
Q 041063 220 KVHRRVLYVDIDVHHGDG 237 (490)
Q Consensus 220 ~~~~RVliVD~DvHHGdG 237 (490)
+...||++||.|.+.|+=
T Consensus 29 ~~g~~VlliD~D~~~~~l 46 (263)
T 1hyq_A 29 QLGHDVTIVDADITMANL 46 (263)
T ss_dssp HTTCCEEEEECCCSSSSH
T ss_pred hCCCcEEEEECCCCCCCc
Confidence 456899999999988763
No 52
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=24.10 E-value=45 Score=32.50 Aligned_cols=64 Identities=11% Similarity=0.259 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCC
Q 041063 289 DESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYT 359 (490)
Q Consensus 289 D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~ 359 (490)
+..+...|++.+ |-+.+|+-..|||-.|--++... + ..+.+.+-+..+++.+.++++|-|||-.
T Consensus 17 ~~~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~~-----~-~~~~~~~~i~~l~~~G~~vViVhGgG~~ 80 (298)
T 2rd5_A 17 PDYRVEILSESL-PFIQKFRGKTIVVKYGGAAMTSP-----E-LKSSVVSDLVLLACVGLRPILVHGGGPD 80 (298)
T ss_dssp -CHHHHHHHHTH-HHHHHTTTCEEEEEECTHHHHCH-----H-HHHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred hHHHHHHHHHHH-HHHHHhcCCEEEEEECchhhCCh-----h-HHHHHHHHHHHHHHCCCCEEEEECCcHH
Confidence 356888888876 78899999999999996655421 0 1122333444455567777877777543
No 53
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=23.58 E-value=1.7e+02 Score=30.72 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCCEEEEecCC-CCCCCCCCCCcccchhhHHHHHHHHH-hcCCCEEEEcCCCCCCch
Q 041063 298 PIIQKVMEVYQPDAVVLQCGA-DSLSGDRLGCFNLSVKGHADCLRFLR-SFNVPLMVLGGGGYTIRN 362 (490)
Q Consensus 298 ~ii~pv~~~F~PdlIvvsaG~-Da~~gDpLG~~~Lt~~g~~~~~~~l~-~~~~pvl~lleGGY~~~~ 362 (490)
..|..+.+.|+|++|+|.... -...||.+ ..+.+.++ ..++||+.+--.||.-..
T Consensus 78 ~~I~~~~~~~~P~~I~V~tTC~~e~IGdDi----------~~v~~~~~~~~g~pVi~v~tpgf~g~~ 134 (511)
T 2xdq_B 78 DNIIRKDTEEHPDLIVLTPTCTSSILQEDL----------QNFVRRASLSTTADVLLADVNHYRVNE 134 (511)
T ss_dssp HHHHHHHHHHCCSEEEEECCHHHHTTCCCH----------HHHHHHHHHHCSSEEEECCCCTTTCCH
T ss_pred HHHHHHHHhcCCCEEEEeCCcHHHHhccCH----------HHHHHHhhhccCCCEEEeeCCCcccch
Confidence 445566788999998887665 66667643 22444443 458999999999998653
No 54
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=23.31 E-value=1.6e+02 Score=30.45 Aligned_cols=47 Identities=23% Similarity=0.271 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHH
Q 041063 290 ESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLR 344 (490)
Q Consensus 290 ~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~ 344 (490)
.+....|+.++. .+.+.+||+||+ +| |.. -...-+.+....+.+.++
T Consensus 54 ~d~~~~l~~ll~-~~~~~~~D~Vli-aG-Dlf-----d~~~~~~~~~~~~~~~L~ 100 (431)
T 3t1i_A 54 NDTFVTLDEILR-LAQENEVDFILL-GG-DLF-----HENKPSRKTLHTCLELLR 100 (431)
T ss_dssp THHHHHHHHHHH-HHHHTTCSEEEE-CS-CCB-----SSSSCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH-HHhhcCCCEEEE-cC-ccc-----cCCCCCHHHHHHHHHHHH
Confidence 345567777664 556799999998 33 333 222345555555555555
No 55
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=23.01 E-value=55 Score=29.54 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCC
Q 041063 294 GLFRPIIQKVMEVYQPDAVVLQCGA 318 (490)
Q Consensus 294 ~~f~~ii~pv~~~F~PdlIvvsaG~ 318 (490)
..++.++..+ ..-+.|+|||-|+.
T Consensus 118 ~~l~~~l~~l-~~~~yD~viiD~pp 141 (254)
T 3kjh_A 118 SFLGSVVSAL-FLDKKEAVVMDMGA 141 (254)
T ss_dssp HHHHHHHHHH-HHTCCSEEEEEECT
T ss_pred HHHHHHHHHh-ccCCCCEEEEeCCC
Confidence 3455556554 33467999998875
No 56
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=22.82 E-value=85 Score=27.27 Aligned_cols=17 Identities=35% Similarity=0.616 Sum_probs=14.1
Q ss_pred HHHHHHHhCCCEEEEec
Q 041063 300 IQKVMEVYQPDAVVLQC 316 (490)
Q Consensus 300 i~pv~~~F~PdlIvvsa 316 (490)
|..++++.+||+|.+|=
T Consensus 26 i~~~i~~~~pDIi~LQE 42 (250)
T 4f1h_A 26 LCSYLALYTPDVVFLQE 42 (250)
T ss_dssp HHHHHHHHCCSEEEEEE
T ss_pred HHHHHHHcCCCEEEEEe
Confidence 44677889999999995
No 57
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=22.75 E-value=1.7e+02 Score=26.48 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=25.0
Q ss_pred HHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcC
Q 041063 302 KVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFN 347 (490)
Q Consensus 302 pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~ 347 (490)
..+++++||+|.+|+-... +.....++++.+++.+
T Consensus 133 ~~~~~~~~d~v~lS~~~~~-----------~~~~~~~~i~~l~~~~ 167 (210)
T 1y80_A 133 EAVKKYQPDIVGMSALLTT-----------TMMNMKSTIDALIAAG 167 (210)
T ss_dssp HHHHHHCCSEEEEECCSGG-----------GTHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCEEEEeccccc-----------cHHHHHHHHHHHHhcC
Confidence 4567789999999985321 3455667888888764
No 58
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=22.70 E-value=1.3e+02 Score=28.15 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=39.5
Q ss_pred CCCCCchhHHHHHHHHHHHhCCCCCCCCCCcccccccCCCcccCcCCCCCCCCCcHHHHHHHHHHHHHHcC
Q 041063 356 GGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLS 426 (490)
Q Consensus 356 GGY~~~~var~w~~~t~~llg~~~~~~lP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~le~i~~~~~~~l~ 426 (490)
-+|.+..+|-+.-++++.++|.++|..--...+|+.|..++ +.+.|+.+.+.+.+.+.
T Consensus 182 l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~-------------~~~~l~~~~~~i~~~~~ 239 (257)
T 2ivx_A 182 LQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTV-------------TLELLDELTHEFLQILE 239 (257)
T ss_dssp GTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSC-------------CHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCC-------------CHHHHHHHHHHHHHHHH
Confidence 47999999999899999999987664211234555554433 45677777777766553
No 59
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=21.85 E-value=70 Score=29.65 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=15.9
Q ss_pred hcCCcEEEEEcccCCCchhhhcc
Q 041063 220 KVHRRVLYVDIDVHHGDGVEEAF 242 (490)
Q Consensus 220 ~~~~RVliVD~DvHHGdGtqe~F 242 (490)
+...||++||.|.. |+.+...+
T Consensus 27 ~~G~~VlliD~D~q-~~~~~~~~ 48 (269)
T 1cp2_A 27 AMGKTIMVVGCDPK-ADSTRLLL 48 (269)
T ss_dssp TTTCCEEEEEECTT-SCSSHHHH
T ss_pred HCCCcEEEEcCCCC-CCHHHHhc
Confidence 45689999999964 55565554
No 60
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=21.54 E-value=2.3e+02 Score=28.30 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=15.5
Q ss_pred HHHHHHHHHhCCCEEEEecC
Q 041063 298 PIIQKVMEVYQPDAVVLQCG 317 (490)
Q Consensus 298 ~ii~pv~~~F~PdlIvvsaG 317 (490)
.-+..++++++||+|++.-+
T Consensus 84 ~~l~~~l~~~kPD~Vlv~gd 103 (385)
T 4hwg_A 84 EKVDEVLEKEKPDAVLFYGD 103 (385)
T ss_dssp HHHHHHHHHHCCSEEEEESC
T ss_pred HHHHHHHHhcCCcEEEEECC
Confidence 34567889999999998733
No 61
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=21.54 E-value=2.1e+02 Score=26.02 Aligned_cols=21 Identities=19% Similarity=0.499 Sum_probs=15.4
Q ss_pred HHHHHHHhCC-CEEEEecCCCC
Q 041063 300 IQKVMEVYQP-DAVVLQCGADS 320 (490)
Q Consensus 300 i~pv~~~F~P-dlIvvsaG~Da 320 (490)
+..++...+| |+|||+.|..=
T Consensus 54 ~~~~l~~~~~~d~ViI~~G~ND 75 (233)
T 1k7c_A 54 FENIADVVTAGDYVIVEFGHND 75 (233)
T ss_dssp HHHHHHHCCTTCEEEECCCTTS
T ss_pred HHHHHhhCCCCCEEEEEccCCC
Confidence 3455566676 99999999843
No 62
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=21.37 E-value=92 Score=27.60 Aligned_cols=17 Identities=35% Similarity=0.647 Sum_probs=14.0
Q ss_pred HHHHHHHhCCCEEEEec
Q 041063 300 IQKVMEVYQPDAVVLQC 316 (490)
Q Consensus 300 i~pv~~~F~PdlIvvsa 316 (490)
|..++++.+||+|.+|=
T Consensus 32 i~~~i~~~~pDIi~LQE 48 (256)
T 4gz1_A 32 VCSCLALYSPDVVFLQE 48 (256)
T ss_dssp HHHHHHHHCCSEEEEEE
T ss_pred HHHHHHHcCCCEEEEEc
Confidence 44677889999999994
No 63
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=20.74 E-value=3e+02 Score=25.02 Aligned_cols=57 Identities=11% Similarity=-0.006 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccc-hhhHHHHHHHHHhcCCCEE
Q 041063 289 DESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLS-VKGHADCLRFLRSFNVPLM 351 (490)
Q Consensus 289 D~~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt-~~g~~~~~~~l~~~~~pvl 351 (490)
|+..+..++..+ .++.+.....|++..|.+.. -.+... .+.+.++.+..++.++.++
T Consensus 80 ~~~~~~~~~~~i-~~a~~lG~~~v~~~~g~~~~-----~~~~~~~~~~l~~l~~~a~~~gv~l~ 137 (272)
T 2q02_A 80 TEEVVKKTEGLL-RDAQGVGARALVLCPLNDGT-----IVPPEVTVEAIKRLSDLFARYDIQGL 137 (272)
T ss_dssp CHHHHHHHHHHH-HHHHHHTCSEEEECCCCSSB-----CCCHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHHH-HHHHHhCCCEEEEccCCCch-----hHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 345566666666 57788999999998887632 334444 6666777777777776443
No 64
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=20.68 E-value=46 Score=29.66 Aligned_cols=46 Identities=15% Similarity=0.227 Sum_probs=26.7
Q ss_pred hCCCEEEEecCCCCCCCCCCCCcccchhh----HHHHHHHHHhcCCCEEEEc
Q 041063 307 YQPDAVVLQCGADSLSGDRLGCFNLSVKG----HADCLRFLRSFNVPLMVLG 354 (490)
Q Consensus 307 F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g----~~~~~~~l~~~~~pvl~ll 354 (490)
.+||+|||+.|..=... ..+....+.+. +..+++.+++. .+++++.
T Consensus 87 ~~pd~vvi~~G~ND~~~-~~~~~~~~~~~~~~~l~~li~~l~~~-~~iil~~ 136 (218)
T 1vjg_A 87 EYNSLVVFSFGLNDTTL-ENGKPRVSIAETIKNTREILTQAKKL-YPVLMIS 136 (218)
T ss_dssp TSEEEEEEECCHHHHCE-ETTEESSCHHHHHHHHHHHHHHHHHH-SCEEEEC
T ss_pred CCCCEEEEEecCCcchh-hcccccCCHHHHHHHHHHHHHHHHHh-CcEEEEC
Confidence 59999999999732210 00011234443 44566667666 7777764
No 65
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=20.43 E-value=2e+02 Score=27.41 Aligned_cols=62 Identities=13% Similarity=0.301 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCC
Q 041063 291 SFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYT 359 (490)
Q Consensus 291 ~yl~~f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~ 359 (490)
.+...|++.+ |-+++|+-..|||-.|--++... + ..+.+.+-+..+++.+.++++|-|||-.
T Consensus 4 ~~~~~~~~~~-pyi~~~~~~~iViKlGGs~l~~~-----~-~~~~~~~~i~~l~~~G~~vVlVhGgG~~ 65 (282)
T 2bty_A 4 DTVNVLLEAL-PYIKEFYGKTFVIKFGGSAMKQE-----N-AKKAFIQDIILLKYTGIKPIIVHGGGPA 65 (282)
T ss_dssp HHHHHHHHHH-HHHHHHTTCEEEEEECSHHHHSH-----H-HHHHHHHHHHHHHHTTCEEEEEECCSHH
T ss_pred HHHHHHHHHH-HHHHHhcCCeEEEEECchhhCCh-----h-HHHHHHHHHHHHHHCCCcEEEEECCcHH
Confidence 4667787765 88899999999999996655431 0 0122333344455557777777777654
No 66
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=20.18 E-value=71 Score=31.76 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=17.4
Q ss_pred hcCCcEEEEEcccCCCchhhhcc
Q 041063 220 KVHRRVLYVDIDVHHGDGVEEAF 242 (490)
Q Consensus 220 ~~~~RVliVD~DvHHGdGtqe~F 242 (490)
+..+|||+||+|.. |+.+...+
T Consensus 28 ~~G~rVLlID~D~q-~~~~~~l~ 49 (361)
T 3pg5_A 28 LQGKRVLYVDCDPQ-CNATQLML 49 (361)
T ss_dssp HTTCCEEEEECCTT-CTTHHHHS
T ss_pred hCCCcEEEEEcCCC-CChhhhhc
Confidence 45689999999987 77776654
Done!