RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 041063
(490 letters)
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 364
Score = 319 bits (818), Expect = e-106
Identities = 150/365 (41%), Positives = 221/365 (60%), Gaps = 6/365 (1%)
Query: 66 YFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEY 125
Y Y P P R M H+LI Y LH++M + +P A ++ FHTD Y
Sbjct: 5 YIYSPEYVSM--CDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAY 62
Query: 126 VEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDAD 185
++ L VS E D S + +G DCP +G+F + A G +I AA L G
Sbjct: 63 LQHLQKVSQEGDDDHPDSI---EYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCK 119
Query: 186 IAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTT 245
+A+NW+GG HHAKK EASGFCY+ND VLGIL L + R+LYVD+D+HHGDGVE+AF T
Sbjct: 120 VAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFT 179
Query: 246 DRVMTVSFHKFGDF-FPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPIIQKVM 304
+VMTVS HKF FPGTG + DVG G+G++Y++NVP+ DG+ DE + + ++++V
Sbjct: 180 SKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVY 239
Query: 305 EVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVA 364
+ + P AVVLQ GAD+++GD + FN++ G CL+++ + + ++LGGGGY + N A
Sbjct: 240 QAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTA 299
Query: 365 RCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQ 424
RCW Y T V +G +++P +E++ +GPDY L + P + N +++I N +
Sbjct: 300 RCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGN 359
Query: 425 LSGLI 429
L ++
Sbjct: 360 LKHVV 364
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
63363]}
Length = 372
Score = 249 bits (636), Expect = 5e-79
Identities = 111/371 (29%), Positives = 169/371 (45%), Gaps = 11/371 (2%)
Query: 62 RRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFH 121
++V G Y Y + HP+K R+ + L E+ + PA ++ FH
Sbjct: 1 KKVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFH 60
Query: 122 TDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNR 181
T++Y+ L K G + PV +F + G ++ A + +
Sbjct: 61 TEDYINTLMEAERCQCVPKG--AREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLK 118
Query: 182 GDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLK-VHRRVLYVDIDVHHGDGVEE 240
G+ N AGG+HHA KS A+GFCY+N+ +GI L K +R+LY+D+D HH DGV+E
Sbjct: 119 GNVAF--NPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKRILYIDLDAHHCDGVQE 176
Query: 241 AFYTTDRVMTVSFHKFGDFF--PGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRP 298
AFY TD+V +S H+ ++ G ++++G G+GK Y LN+PL GL+D F
Sbjct: 177 AFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEK 236
Query: 299 IIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGY 358
++ V EV++P+ +LQ G D L D L FNLS +R + LGGGGY
Sbjct: 237 SLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGY 296
Query: 359 TIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDY----TLHVEPCNMENLNAHKDM 414
+AR W G E KL D+ +E L
Sbjct: 297 HPYALARAWTLIWCELSGREVPEKLNNKAKELLKSIDFEEFDDEVDRSYMLETLKDPWRG 356
Query: 415 EKIRNTLLEQL 425
++R + + L
Sbjct: 357 GEVRKEVKDTL 367
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 192 bits (488), Expect = 4e-57
Identities = 85/395 (21%), Positives = 155/395 (39%), Gaps = 44/395 (11%)
Query: 63 RVSYFYEPTIGDYYYGQG----HPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIR 118
Y+ + + G HP RI+ + + GL + E R A +++
Sbjct: 5 TTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQ 64
Query: 119 RFHTDEYVEFLASVSP---ESSGDPSFSRHLKRFNVGEDC--------PVFDGLFGF--C 165
H++ +V + + +R V C +++ L
Sbjct: 65 SVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAA 124
Query: 166 QASAGGSIGAAVKLNRGDADIAVNWAGGL-HHAKKSEASGFCYVNDIVLGILELLKVHR- 223
+ +AG A K+ + HHA S A GFC+ N + + +L + +
Sbjct: 125 RWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKA 184
Query: 224 -RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGD--FFPGTGHIKDVGAGQGKFYALN 280
++L VD DVHHG+G ++ FY V+ +S H+ D FFPG+G + +VGAG G+ + +N
Sbjct: 185 SKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVN 244
Query: 281 VPLND----GLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGD--RLGCFNLSVK 334
V + D + FR ++ + + PD V++ G D+ G LG +++S K
Sbjct: 245 VAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAK 304
Query: 335 GHADCLRFLRSF-NVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFG 393
+ L + +++ GG+ + + A +G D P +E
Sbjct: 305 CFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVD---PLSEEGWKQK 361
Query: 394 PDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGL 428
P NLNA + +E + + +
Sbjct: 362 P------------NLNAIRSLEAVIRVHSKYWGCM 384
>d2qswa1 d.58.18.13 (A:256-345) Methionine import ATP-binding
protein MetN2 {Enterococcus faecalis [TaxId: 1351]}
Length = 90
Score = 28.9 bits (65), Expect = 0.40
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 297 RPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHAD----CLRFLRSFNVPLMV 352
PII +++ YQ + ++Q +G + + G + LR V V
Sbjct: 27 LPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEV 86
Query: 353 LG 354
+G
Sbjct: 87 IG 88
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 30.1 bits (68), Expect = 0.49
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 12/83 (14%)
Query: 13 RNRIQCLDFCK--------KRERGGKKKRHKREKSQLSKMEEPTEGASLVSGPDGKKRRV 64
+N I L C K + +K+ K EK ++ + E D K R+
Sbjct: 91 KNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERI 150
Query: 65 SYF-YEPTIGDYYYGQG-HPMKP 85
+ F EP + G+G HP
Sbjct: 151 ANFKIEPP--GLFRGRGNHPKMG 171
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 29.3 bits (66), Expect = 0.78
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 16/81 (19%)
Query: 15 RIQCLDFC----------KKRERGGKKKRHKREKSQLSKMEEPTEGASLVSGPDGKKRRV 64
I+ C ++E+ KK+ +EK Q+ E E DG++ +V
Sbjct: 85 EIKEFSRCDFTKMFDYFQLQKEQ--KKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQV 142
Query: 65 SYF-YEPTIGDYYYGQG-HPM 83
F EP D + G+G HP
Sbjct: 143 GNFKVEPP--DLFRGRGAHPK 161
>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus
plantarum [TaxId: 1590]}
Length = 183
Score = 26.9 bits (58), Expect = 3.8
Identities = 8/66 (12%), Positives = 15/66 (22%)
Query: 349 PLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENL 408
PL+ G G + + K + Y + + E L
Sbjct: 33 PLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRVAQKPANEAL 92
Query: 409 NAHKDM 414
+
Sbjct: 93 AQADVV 98
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 25.4 bits (55), Expect = 4.6
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 304 MEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRS 345
EVY P+A+ C + + C H DC+ +
Sbjct: 9 CEVYDPNALYCICRQPHNNRFMICCDRCEEWFHGDCVGISEA 50
>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans
[TaxId: 1377]}
Length = 177
Score = 26.2 bits (56), Expect = 7.4
Identities = 7/66 (10%), Positives = 15/66 (22%)
Query: 349 PLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENL 408
P++ G G + + V N + +E E +
Sbjct: 24 PVIYAGIGTMGHGPAVQELARKIKAPVITTGKNFETFEWDFEALTGSTYRVGWKPANETI 83
Query: 409 NAHKDM 414
+
Sbjct: 84 LEADTV 89
>d1tlta2 d.81.1.5 (A:128-267) Virulence factor MviM {Escherichia
coli [TaxId: 562]}
Length = 140
Score = 26.0 bits (57), Expect = 7.6
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 103 RMEVNRPFPAGPSDIRRFHTDEYV 126
RM+ +R GP D+ D+Y+
Sbjct: 18 RMDKHRSNSVGPHDLYFTLLDDYL 41
>d1t8sa_ c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [TaxId:
562]}
Length = 477
Score = 26.5 bits (58), Expect = 8.1
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 417 IRNTLLEQLSGLIHAPSVPFQTTPATTQVP 446
R+ L EQL+ L P+ ++P
Sbjct: 86 FRSYLNEQLTLLYQDYGAHISVQPSQHEIP 115
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.140 0.437
Gapped
Lambda K H
0.267 0.0446 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,983,875
Number of extensions: 98879
Number of successful extensions: 305
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 15
Length of query: 490
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 401
Effective length of database: 1,185,626
Effective search space: 475436026
Effective search space used: 475436026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.7 bits)