Query 041065
Match_columns 148
No_of_seqs 257 out of 1729
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 03:27:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041065.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041065hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 99.8 7.1E-21 1.5E-25 154.6 10.5 134 7-146 368-511 (623)
2 PLN00113 leucine-rich repeat r 99.8 7.7E-21 1.7E-25 160.7 10.7 137 8-146 26-185 (968)
3 PLN00113 leucine-rich repeat r 99.5 8.2E-14 1.8E-18 118.3 6.2 89 54-143 501-589 (968)
4 PLN03150 hypothetical protein; 99.3 6.7E-12 1.5E-16 102.5 6.2 91 52-143 442-533 (623)
5 PF13855 LRR_8: Leucine rich r 99.2 2.1E-11 4.5E-16 70.4 3.3 61 77-137 1-61 (61)
6 KOG0617 Ras suppressor protein 99.2 2.5E-12 5.4E-17 88.5 -0.8 91 51-145 32-123 (264)
7 KOG0617 Ras suppressor protein 99.0 3.1E-12 6.7E-17 88.1 -4.7 73 72-147 122-194 (264)
8 PF13855 LRR_8: Leucine rich r 99.0 3.5E-10 7.5E-15 65.2 3.9 60 53-113 2-61 (61)
9 PF08263 LRRNT_2: Leucine rich 98.9 1.4E-09 3E-14 58.4 4.1 40 10-49 2-43 (43)
10 PF14580 LRR_9: Leucine-rich r 98.8 6.1E-09 1.3E-13 72.3 4.8 83 52-138 42-126 (175)
11 PF14580 LRR_9: Leucine-rich r 98.8 5.9E-09 1.3E-13 72.4 3.2 80 53-138 20-101 (175)
12 KOG0444 Cytoskeletal regulator 98.7 5.9E-10 1.3E-14 89.8 -2.8 69 76-146 267-336 (1255)
13 KOG0618 Serine/threonine phosp 98.7 2.5E-09 5.3E-14 88.7 -1.4 88 51-142 382-470 (1081)
14 KOG4194 Membrane glycoprotein 98.6 9.1E-09 2E-13 82.2 1.5 85 53-138 270-354 (873)
15 PF12799 LRR_4: Leucine Rich r 98.6 2.3E-08 5E-13 53.8 2.6 36 102-138 2-37 (44)
16 KOG4194 Membrane glycoprotein 98.6 5.5E-09 1.2E-13 83.4 0.0 87 54-141 295-381 (873)
17 KOG0444 Cytoskeletal regulator 98.6 4.9E-09 1.1E-13 84.6 -0.4 87 54-144 57-144 (1255)
18 KOG0472 Leucine-rich repeat pr 98.6 3.1E-09 6.7E-14 81.5 -1.5 87 52-143 435-544 (565)
19 PRK15387 E3 ubiquitin-protein 98.6 3.7E-08 8.1E-13 82.0 3.2 63 78-145 403-465 (788)
20 KOG0472 Leucine-rich repeat pr 98.6 9E-09 1.9E-13 79.0 -0.6 65 53-120 459-545 (565)
21 PF12799 LRR_4: Leucine Rich r 98.5 8.3E-08 1.8E-12 51.6 2.8 37 77-114 1-37 (44)
22 KOG0618 Serine/threonine phosp 98.4 3.9E-08 8.5E-13 81.8 0.2 88 53-145 46-133 (1081)
23 KOG4237 Extracellular matrix p 98.4 3.7E-08 8E-13 75.4 -0.8 84 53-138 68-153 (498)
24 PLN03210 Resistant to P. syrin 98.4 1E-06 2.3E-11 76.8 7.7 80 53-135 612-691 (1153)
25 PLN03210 Resistant to P. syrin 98.4 1.2E-06 2.6E-11 76.4 7.7 90 52-144 634-723 (1153)
26 KOG4237 Extracellular matrix p 98.3 1.9E-07 4.1E-12 71.6 1.5 85 52-137 274-358 (498)
27 PRK15370 E3 ubiquitin-protein 98.3 1.3E-06 2.8E-11 73.0 6.4 38 102-143 263-300 (754)
28 PRK15370 E3 ubiquitin-protein 98.3 1.2E-06 2.6E-11 73.2 6.1 82 53-145 200-281 (754)
29 KOG4579 Leucine-rich repeat (L 98.3 4.4E-08 9.5E-13 65.3 -1.8 87 52-143 53-140 (177)
30 COG4886 Leucine-rich repeat (L 98.3 3.2E-07 6.9E-12 71.1 2.6 88 53-145 117-205 (394)
31 cd00116 LRR_RI Leucine-rich re 98.3 3.6E-07 7.7E-12 68.4 1.5 85 53-138 138-234 (319)
32 KOG1259 Nischarin, modulator o 98.2 2.9E-07 6.2E-12 68.8 0.5 63 73-138 325-387 (490)
33 cd00116 LRR_RI Leucine-rich re 98.2 4.8E-07 1E-11 67.7 0.5 62 77-138 137-206 (319)
34 KOG0532 Leucine-rich repeat (L 98.2 2.4E-07 5.2E-12 73.9 -1.3 88 54-146 145-254 (722)
35 KOG4658 Apoptotic ATPase [Sign 98.1 1.6E-06 3.4E-11 73.6 2.1 88 53-142 546-635 (889)
36 KOG0532 Leucine-rich repeat (L 98.0 2.2E-07 4.8E-12 74.1 -3.3 62 72-136 207-271 (722)
37 PRK15387 E3 ubiquitin-protein 98.0 1.6E-05 3.4E-10 66.7 6.7 13 102-114 303-315 (788)
38 KOG4658 Apoptotic ATPase [Sign 98.0 1.6E-06 3.6E-11 73.5 0.8 83 51-135 570-652 (889)
39 COG4886 Leucine-rich repeat (L 98.0 1.5E-06 3.3E-11 67.3 0.4 82 53-138 141-222 (394)
40 KOG1259 Nischarin, modulator o 98.0 2.7E-06 5.9E-11 63.7 1.2 81 53-138 285-365 (490)
41 KOG4579 Leucine-rich repeat (L 97.7 4.1E-06 8.8E-11 56.0 -1.4 93 48-144 23-118 (177)
42 KOG1859 Leucine-rich repeat pr 97.6 3.9E-06 8.5E-11 69.0 -2.5 81 52-139 187-268 (1096)
43 KOG0531 Protein phosphatase 1, 97.6 3.8E-05 8.3E-10 60.2 2.7 81 52-138 95-175 (414)
44 KOG1644 U2-associated snRNP A' 97.5 0.00022 4.7E-09 50.6 4.6 82 53-138 43-126 (233)
45 PF00560 LRR_1: Leucine Rich R 97.4 8.1E-05 1.7E-09 33.8 1.0 20 127-147 2-21 (22)
46 KOG1859 Leucine-rich repeat pr 97.2 1.5E-05 3.2E-10 65.8 -3.7 79 54-138 166-245 (1096)
47 KOG0531 Protein phosphatase 1, 97.2 0.00011 2.4E-09 57.6 0.8 84 53-142 73-156 (414)
48 KOG3207 Beta-tubulin folding c 97.2 4.1E-05 8.8E-10 59.7 -1.8 64 74-138 243-314 (505)
49 PF00560 LRR_1: Leucine Rich R 97.2 0.00014 3E-09 33.0 0.6 20 103-123 2-21 (22)
50 KOG2739 Leucine-rich acidic nu 97.1 0.00028 6E-09 51.6 2.0 80 54-138 45-129 (260)
51 KOG2982 Uncharacterized conser 97.0 0.00014 2.9E-09 54.6 -0.6 86 52-138 71-159 (418)
52 KOG3207 Beta-tubulin folding c 97.0 0.00026 5.7E-09 55.3 0.9 86 52-138 197-284 (505)
53 KOG2123 Uncharacterized conser 96.6 4.3E-05 9.3E-10 56.7 -5.4 82 47-131 36-123 (388)
54 KOG0473 Leucine-rich repeat pr 96.5 4.4E-05 9.6E-10 55.4 -5.8 83 52-138 42-124 (326)
55 KOG3665 ZYG-1-like serine/thre 96.4 0.0013 2.7E-08 55.0 1.3 41 97-138 216-263 (699)
56 KOG2739 Leucine-rich acidic nu 96.4 0.0023 5E-08 46.8 2.3 64 73-138 39-104 (260)
57 PF13504 LRR_7: Leucine rich r 96.3 0.0023 5E-08 27.0 1.2 13 126-138 2-14 (17)
58 KOG3665 ZYG-1-like serine/thre 96.1 0.003 6.4E-08 52.8 2.0 83 52-137 148-232 (699)
59 KOG1644 U2-associated snRNP A' 96.1 0.0082 1.8E-07 42.8 3.6 61 76-138 41-101 (233)
60 smart00369 LRR_TYP Leucine-ric 95.9 0.0059 1.3E-07 28.5 1.6 18 125-143 2-19 (26)
61 smart00370 LRR Leucine-rich re 95.9 0.0059 1.3E-07 28.5 1.6 18 125-143 2-19 (26)
62 KOG1909 Ran GTPase-activating 95.6 0.0019 4.2E-08 49.2 -1.3 84 53-137 214-310 (382)
63 PRK15386 type III secretion pr 95.5 0.031 6.7E-07 44.1 5.0 60 52-120 52-113 (426)
64 COG5238 RNA1 Ran GTPase-activa 95.4 0.017 3.7E-07 43.2 3.1 66 72-138 87-170 (388)
65 KOG1909 Ran GTPase-activating 95.3 0.0059 1.3E-07 46.7 0.4 85 53-138 186-283 (382)
66 smart00370 LRR Leucine-rich re 94.9 0.025 5.4E-07 26.3 1.9 20 100-120 1-20 (26)
67 smart00369 LRR_TYP Leucine-ric 94.9 0.025 5.4E-07 26.3 1.9 20 100-120 1-20 (26)
68 KOG2123 Uncharacterized conser 94.0 0.0025 5.4E-08 47.6 -4.0 90 48-143 15-106 (388)
69 COG5238 RNA1 Ran GTPase-activa 93.9 0.027 5.9E-07 42.1 1.2 87 51-138 29-133 (388)
70 PRK15386 type III secretion pr 93.8 0.082 1.8E-06 41.7 3.6 66 73-146 48-115 (426)
71 KOG0473 Leucine-rich repeat pr 93.1 0.0016 3.4E-08 47.5 -6.3 73 72-147 37-109 (326)
72 KOG2982 Uncharacterized conser 93.0 0.039 8.5E-07 41.8 0.8 64 75-138 69-134 (418)
73 PF13516 LRR_6: Leucine Rich r 92.3 0.011 2.3E-07 27.0 -2.0 14 101-114 2-15 (24)
74 PF13306 LRR_5: Leucine rich r 92.3 0.68 1.5E-05 29.6 5.9 76 53-134 36-112 (129)
75 smart00364 LRR_BAC Leucine-ric 92.2 0.097 2.1E-06 24.6 1.3 17 126-143 3-19 (26)
76 KOG2120 SCF ubiquitin ligase, 92.1 0.069 1.5E-06 40.5 1.0 59 74-134 310-372 (419)
77 smart00365 LRR_SD22 Leucine-ri 87.9 0.47 1E-05 22.2 1.6 15 124-138 1-15 (26)
78 PF13306 LRR_5: Leucine rich r 85.7 2.2 4.8E-05 27.1 4.6 79 53-135 13-91 (129)
79 smart00368 LRR_RI Leucine rich 85.2 0.72 1.6E-05 21.8 1.5 13 102-114 3-15 (28)
80 KOG3864 Uncharacterized conser 84.0 0.11 2.5E-06 37.0 -2.2 81 53-134 102-185 (221)
81 KOG2120 SCF ubiquitin ligase, 80.7 0.1 2.2E-06 39.7 -3.7 57 78-134 186-243 (419)
82 KOG3763 mRNA export factor TAP 61.6 4.2 9.1E-05 33.4 1.1 61 52-115 218-284 (585)
83 TIGR00864 PCC polycystin catio 54.8 8.2 0.00018 37.6 1.9 34 58-92 1-34 (2740)
84 smart00367 LRR_CC Leucine-rich 51.7 11 0.00024 17.0 1.2 12 101-112 2-13 (26)
85 KOG3763 mRNA export factor TAP 37.6 16 0.00035 30.2 0.9 64 73-138 214-283 (585)
86 KOG1947 Leucine rich repeat pr 34.2 17 0.00036 28.5 0.5 63 74-136 240-306 (482)
87 TIGR00864 PCC polycystin catio 28.3 33 0.00071 33.9 1.4 15 52-66 19-33 (2740)
88 KOG4308 LRR-containing protein 21.7 6.1 0.00013 32.0 -3.9 83 54-137 89-184 (478)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=99.85 E-value=7.1e-21 Score=154.58 Aligned_cols=134 Identities=26% Similarity=0.367 Sum_probs=118.0
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCcCCCcCCCCCc-----cccceeeCCC-----CCeEEEEcCCCCccceecCCCCCCC
Q 041065 7 SESNEEADALLKWKASLKNHNRSLLSSCINDATNV-----SSKTSPCNDA-----GRVINISLPNRGVNGTLHDFSFSSF 76 (148)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~c-----~~~gv~c~~~-----~~l~~L~l~~n~l~~~~p~~~~~~l 76 (148)
.....|..+|..+|..+..+. ..+|.+ ++| .|.|+.|... ..++.|+|++|.+.|.+|. .+..+
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~---~~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~-~i~~L 441 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPL---RFGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN-DISKL 441 (623)
T ss_pred ccCchHHHHHHHHHHhcCCcc---cCCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH-HHhCC
Confidence 345678999999999886432 237965 345 6999999522 2489999999999999997 89999
Q ss_pred CCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCccccccCCCCCc
Q 041065 77 PHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTC 146 (148)
Q Consensus 77 ~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~ 146 (148)
++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|..++.+++|++|+|++|+++|.+|..++
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~ 511 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998765
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=7.7e-21 Score=160.72 Aligned_cols=137 Identities=30% Similarity=0.480 Sum_probs=104.2
Q ss_pred CCHHHHHHHHHHHHhccCCCCCCcCCCcCCCCCccccceeeCCCCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccC
Q 041065 8 ESNEEADALLKWKASLKNHNRSLLSSCINDATNVSSKTSPCNDAGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWN 87 (148)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~c~~~gv~c~~~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n 87 (148)
..++|+.+|++||+++.++ .....+|+...++|.|.|++|...++|+.|++++|++.+.++. .+..+++|+.|+|++|
T Consensus 26 ~~~~~~~~l~~~~~~~~~~-~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n 103 (968)
T PLN00113 26 LHAEELELLLSFKSSINDP-LKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNN 103 (968)
T ss_pred CCHHHHHHHHHHHHhCCCC-cccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCCh-HHhCCCCCCEEECCCC
Confidence 3568999999999998653 3346899877789999999998778999999999999888876 7888888999999988
Q ss_pred ccccCCCcccc-CCCCCceeecCCCcccc----------------------cCCccccCCCCCcEEEccCccccccCCCC
Q 041065 88 GFFGTIPPQIS-NLSNLRYIYLGSNQFFG----------------------NIPAEVGLLSHLEVLHIQLNRLDGSWRMC 144 (148)
Q Consensus 88 ~l~g~~p~~~~-~l~~L~~L~ls~n~l~g----------------------~~p~~~~~l~~L~~L~l~~N~l~g~iP~~ 144 (148)
.++|.+|..+. .+++|++|++++|+++| .+|..++.+++|++|++++|.+.+.+|..
T Consensus 104 ~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 183 (968)
T PLN00113 104 QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183 (968)
T ss_pred ccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh
Confidence 88888887654 66666666666666554 44555556666666666666666666655
Q ss_pred Cc
Q 041065 145 TC 146 (148)
Q Consensus 145 ~~ 146 (148)
++
T Consensus 184 ~~ 185 (968)
T PLN00113 184 LT 185 (968)
T ss_pred hh
Confidence 44
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.46 E-value=8.2e-14 Score=118.28 Aligned_cols=89 Identities=31% Similarity=0.506 Sum_probs=46.3
Q ss_pred eEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEcc
Q 041065 54 VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQ 133 (148)
Q Consensus 54 l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~ 133 (148)
++.|++++|.+.+.+|. .+..+++|++|++++|.++|.+|..+..+++|+.|++++|+++|.+|..+..+++|+.|+++
T Consensus 501 L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 579 (968)
T PLN00113 501 LMQLKLSENKLSGEIPD-ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579 (968)
T ss_pred cCEEECcCCcceeeCCh-HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEecc
Confidence 34444444444444443 44455555555555555555555555555555555555555555555555555555555555
Q ss_pred CccccccCCC
Q 041065 134 LNRLDGSWRM 143 (148)
Q Consensus 134 ~N~l~g~iP~ 143 (148)
+|+++|.+|.
T Consensus 580 ~N~l~~~~p~ 589 (968)
T PLN00113 580 HNHLHGSLPS 589 (968)
T ss_pred CCcceeeCCC
Confidence 5555555553
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.27 E-value=6.7e-12 Score=102.46 Aligned_cols=91 Identities=27% Similarity=0.426 Sum_probs=82.2
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCC-CCCcEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLL-SHLEVL 130 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l-~~L~~L 130 (148)
.+++.|+|++|.+.|.+|. .+..+++|+.|+|++|.++|.+|..++++++|++|+|++|+++|.+|..++.+ .++..+
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~-~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCEEECCCCcccCcCCh-HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 5789999999999999997 89999999999999999999999999999999999999999999999988764 467889
Q ss_pred EccCccccccCCC
Q 041065 131 HIQLNRLDGSWRM 143 (148)
Q Consensus 131 ~l~~N~l~g~iP~ 143 (148)
++.+|.....+|.
T Consensus 521 ~~~~N~~lc~~p~ 533 (623)
T PLN03150 521 NFTDNAGLCGIPG 533 (623)
T ss_pred EecCCccccCCCC
Confidence 9999986655553
No 5
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.18 E-value=2.1e-11 Score=70.41 Aligned_cols=61 Identities=33% Similarity=0.414 Sum_probs=41.4
Q ss_pred CCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCccc
Q 041065 77 PHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRL 137 (148)
Q Consensus 77 ~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l 137 (148)
++|++|++++|+++...+..|..+++|++|++++|.++..-|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3567777777777644445566777777777777777754455677777777777777764
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.17 E-value=2.5e-12 Score=88.53 Aligned_cols=91 Identities=24% Similarity=0.400 Sum_probs=71.1
Q ss_pred CCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065 51 AGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL 130 (148)
Q Consensus 51 ~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L 130 (148)
+.+++.|.|++|.++ .+|+ .+..+.+|+.|++++|+++ .+|.+++.++.|+.|+++-|++. .+|..||.++.|++|
T Consensus 32 ~s~ITrLtLSHNKl~-~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 356778888888887 4554 6888888888888888887 77888888888888888888887 788888888888888
Q ss_pred EccCcccc-ccCCCCC
Q 041065 131 HIQLNRLD-GSWRMCT 145 (148)
Q Consensus 131 ~l~~N~l~-g~iP~~~ 145 (148)
||.+|++. ..+|..|
T Consensus 108 dltynnl~e~~lpgnf 123 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNF 123 (264)
T ss_pred hccccccccccCCcch
Confidence 88887776 4556543
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.05 E-value=3.1e-12 Score=88.05 Aligned_cols=73 Identities=34% Similarity=0.488 Sum_probs=42.1
Q ss_pred CCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCccccccCCCCCcC
Q 041065 72 SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTCT 147 (148)
Q Consensus 72 ~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~ 147 (148)
.|..|..|+.|+|+.|.|. .+|+.++++++|+.|.+.+|.+- .+|.+++.++.|+.|++.+|.++ .+|+++++
T Consensus 122 nff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 122 NFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred chhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 3333444444444444443 45556666666666666666665 56666666666666666666666 66666553
No 8
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.03 E-value=3.5e-10 Score=65.21 Aligned_cols=60 Identities=35% Similarity=0.535 Sum_probs=53.3
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQF 113 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l 113 (148)
+++.|++++|.++. +|...|..+++|++|++++|.++...|..|..+++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~-i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTE-IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESE-ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCc-cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 68899999999984 5544899999999999999999976777899999999999999975
No 9
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.95 E-value=1.4e-09 Score=58.35 Aligned_cols=40 Identities=33% Similarity=0.437 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhccCCCCCCcCCCcCC--CCCccccceeeC
Q 041065 10 NEEADALLKWKASLKNHNRSLLSSCIND--ATNVSSKTSPCN 49 (148)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~W~~~--~~~c~~~gv~c~ 49 (148)
++|+++|++||+++.+++...+.+|+.. .++|+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 5799999999999986555558999876 789999999995
No 10
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=6.1e-09 Score=72.34 Aligned_cols=83 Identities=27% Similarity=0.389 Sum_probs=39.1
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccc-cCCCCCceeecCCCcccccC-CccccCCCCCcE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNI-PAEVGLLSHLEV 129 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~-~~l~~L~~L~ls~n~l~g~~-p~~~~~l~~L~~ 129 (148)
.+++.|++++|.++ .+. .+..++.|+.|++++|.++ .+.+.+ ..+++|+.|++++|++...- -..+..+++|++
T Consensus 42 ~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 42 DKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp TT--EEE-TTS--S---T--T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred cCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 47899999999988 354 4778899999999999998 455444 35889999999999997311 135677899999
Q ss_pred EEccCcccc
Q 041065 130 LHIQLNRLD 138 (148)
Q Consensus 130 L~l~~N~l~ 138 (148)
|++.+|.++
T Consensus 118 L~L~~NPv~ 126 (175)
T PF14580_consen 118 LSLEGNPVC 126 (175)
T ss_dssp EE-TT-GGG
T ss_pred eeccCCccc
Confidence 999999876
No 11
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.76 E-value=5.9e-09 Score=72.41 Aligned_cols=80 Identities=19% Similarity=0.351 Sum_probs=29.0
Q ss_pred CeEEEEcCCCCccceecCCCCC-CCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccc-cCCCCCcEE
Q 041065 53 RVINISLPNRGVNGTLHDFSFS-SFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEV-GLLSHLEVL 130 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~-~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~-~~l~~L~~L 130 (148)
++++|+|++|.++. +. .+. .+.+|+.|++++|.++ .+. .+..+++|++|++++|+++ .+...+ ..+++|+.|
T Consensus 20 ~~~~L~L~~n~I~~-Ie--~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 20 KLRELNLRGNQIST-IE--NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccc-cc--chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 57899999999873 43 355 5789999999999998 343 5788999999999999999 565545 468999999
Q ss_pred EccCcccc
Q 041065 131 HIQLNRLD 138 (148)
Q Consensus 131 ~l~~N~l~ 138 (148)
++++|++.
T Consensus 94 ~L~~N~I~ 101 (175)
T PF14580_consen 94 YLSNNKIS 101 (175)
T ss_dssp E-TTS---
T ss_pred ECcCCcCC
Confidence 99999987
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.73 E-value=5.9e-10 Score=89.77 Aligned_cols=69 Identities=29% Similarity=0.521 Sum_probs=35.1
Q ss_pred CCCCcEEEcccCccccCCCccccCCCCCceeecCCCccc-ccCCccccCCCCCcEEEccCccccccCCCCCc
Q 041065 76 FPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFF-GNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTC 146 (148)
Q Consensus 76 l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~-g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~ 146 (148)
..+|+.|++|.|+++ .+|..+.++++|+.|++.+|+++ .-||+.||+|..|+++..++|++. -+|+.+|
T Consensus 267 W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglc 336 (1255)
T KOG0444|consen 267 WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLC 336 (1255)
T ss_pred Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhh
Confidence 344444555555554 45555555555555555555443 124555555555555555555555 5555444
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.66 E-value=2.5e-09 Score=88.70 Aligned_cols=88 Identities=25% Similarity=0.371 Sum_probs=76.3
Q ss_pred CCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065 51 AGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL 130 (148)
Q Consensus 51 ~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L 130 (148)
..+++.|+|++|.+. .+|...+.++..|+.|+||+|.++ .+|..+.++..|++|...+|++. .+| ++..++.|+++
T Consensus 382 ~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~l 457 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVL 457 (1081)
T ss_pred ccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEE
Confidence 368999999999987 566546788999999999999998 88999999999999999999998 788 78899999999
Q ss_pred EccCcccc-ccCC
Q 041065 131 HIQLNRLD-GSWR 142 (148)
Q Consensus 131 ~l~~N~l~-g~iP 142 (148)
|++.|+++ +.+|
T Consensus 458 DlS~N~L~~~~l~ 470 (1081)
T KOG0618|consen 458 DLSCNNLSEVTLP 470 (1081)
T ss_pred ecccchhhhhhhh
Confidence 99999887 3444
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.65 E-value=9.1e-09 Score=82.22 Aligned_cols=85 Identities=21% Similarity=0.239 Sum_probs=45.9
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
.++.|+|+.|.++..-.. .+.+++.|+.|++|+|.+....++.+...++|++|+|++|+++..-+..|..|..|+.|+|
T Consensus 270 kme~l~L~~N~l~~vn~g-~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVNEG-WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred ccceeecccchhhhhhcc-cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 345555555555432222 5555566666666666655555555555556666666666665333334555555666666
Q ss_pred cCcccc
Q 041065 133 QLNRLD 138 (148)
Q Consensus 133 ~~N~l~ 138 (148)
+.|.++
T Consensus 349 s~Nsi~ 354 (873)
T KOG4194|consen 349 SHNSID 354 (873)
T ss_pred cccchH
Confidence 665544
No 15
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.64 E-value=2.3e-08 Score=53.83 Aligned_cols=36 Identities=33% Similarity=0.523 Sum_probs=17.7
Q ss_pred CCceeecCCCcccccCCccccCCCCCcEEEccCcccc
Q 041065 102 NLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLD 138 (148)
Q Consensus 102 ~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~ 138 (148)
+|++|++++|+++ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4455555555555 34444555555555555555554
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.64 E-value=5.5e-09 Score=83.45 Aligned_cols=87 Identities=23% Similarity=0.145 Sum_probs=43.3
Q ss_pred eEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEcc
Q 041065 54 VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQ 133 (148)
Q Consensus 54 l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~ 133 (148)
++.|+++.|.+...-++ .....+.|++|+|++|+++...+..|.-|..|+.|+|+.|++...--..|..+++|+.|||+
T Consensus 295 L~~L~lS~NaI~rih~d-~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 295 LEQLDLSYNAIQRIHID-SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR 373 (873)
T ss_pred hhhhccchhhhheeecc-hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence 44455555555543333 44445555555555555554344445555555555555555542222344455555555555
Q ss_pred CccccccC
Q 041065 134 LNRLDGSW 141 (148)
Q Consensus 134 ~N~l~g~i 141 (148)
+|.+++.|
T Consensus 374 ~N~ls~~I 381 (873)
T KOG4194|consen 374 SNELSWCI 381 (873)
T ss_pred CCeEEEEE
Confidence 55555444
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.63 E-value=4.9e-09 Score=84.60 Aligned_cols=87 Identities=21% Similarity=0.345 Sum_probs=43.3
Q ss_pred eEEEEcCCCCccceecCCCCCCCCCCcEEEcccCcccc-CCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 54 VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFG-TIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 54 l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g-~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
++.|.+.+|.+.. +.. .+..++.|+.+++..|++.. -+|+.+..+..|..||||+|++. ..|..+..-.++.+|+|
T Consensus 57 LEHLs~~HN~L~~-vhG-ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNL 133 (1255)
T KOG0444|consen 57 LEHLSMAHNQLIS-VHG-ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNL 133 (1255)
T ss_pred hhhhhhhhhhhHh-hhh-hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEc
Confidence 3444444554442 222 44555555555555555522 24555555555555555555555 45555555555555555
Q ss_pred cCccccccCCCC
Q 041065 133 QLNRLDGSWRMC 144 (148)
Q Consensus 133 ~~N~l~g~iP~~ 144 (148)
++|++. .||..
T Consensus 134 S~N~Ie-tIPn~ 144 (1255)
T KOG0444|consen 134 SYNNIE-TIPNS 144 (1255)
T ss_pred ccCccc-cCCch
Confidence 555555 55543
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.63 E-value=3.1e-09 Score=81.54 Aligned_cols=87 Identities=26% Similarity=0.437 Sum_probs=67.1
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccc----------------------cCCCc-cccCCCCCceeec
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFF----------------------GTIPP-QISNLSNLRYIYL 108 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~----------------------g~~p~-~~~~l~~L~~L~l 108 (148)
.+++-|+|++|-+. ++|. +++.+..|+.||++.|+|. +.+++ .+.+|.+|..|||
T Consensus 435 ~kLt~L~L~NN~Ln-~LP~-e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL 512 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLN-DLPE-EMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL 512 (565)
T ss_pred hcceeeecccchhh-hcch-hhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence 45666777777665 5665 6777777777777777654 23333 3778899999999
Q ss_pred CCCcccccCCccccCCCCCcEEEccCccccccCCC
Q 041065 109 GSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRM 143 (148)
Q Consensus 109 s~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 143 (148)
.+|.+. .+|+.++++++|++|++.+|.|. .|.
T Consensus 513 ~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr 544 (565)
T KOG0472|consen 513 QNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPR 544 (565)
T ss_pred CCCchh-hCChhhccccceeEEEecCCccC--CCH
Confidence 999998 89999999999999999999997 554
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.57 E-value=3.7e-08 Score=82.03 Aligned_cols=63 Identities=21% Similarity=0.153 Sum_probs=45.8
Q ss_pred CCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCccccccCCCCC
Q 041065 78 HLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCT 145 (148)
Q Consensus 78 ~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~ 145 (148)
+|+.|++++|.++ .+|.. +.+|+.|++++|+++ .+|..+..+++|+.|+|++|+|+|.+|..+
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 4555555565555 24432 235677788888887 788888899999999999999998877654
No 20
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.56 E-value=9e-09 Score=79.05 Aligned_cols=65 Identities=28% Similarity=0.428 Sum_probs=52.8
Q ss_pred CeEEEEcCCCCccc----------------------eecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCC
Q 041065 53 RVINISLPNRGVNG----------------------TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGS 110 (148)
Q Consensus 53 ~l~~L~l~~n~l~~----------------------~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~ 110 (148)
+++.|+++.|.+.. .++...+.+|.+|..|||.+|.+. .+|+.+++|++|++|++++
T Consensus 459 ~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~g 537 (565)
T KOG0472|consen 459 RLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDG 537 (565)
T ss_pred hhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecC
Confidence 57788888776542 222223788999999999999998 8999999999999999999
Q ss_pred CcccccCCcc
Q 041065 111 NQFFGNIPAE 120 (148)
Q Consensus 111 n~l~g~~p~~ 120 (148)
|.|. .|..
T Consensus 538 Npfr--~Pr~ 545 (565)
T KOG0472|consen 538 NPFR--QPRH 545 (565)
T ss_pred CccC--CCHH
Confidence 9998 5543
No 21
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.53 E-value=8.3e-08 Score=51.63 Aligned_cols=37 Identities=38% Similarity=0.557 Sum_probs=31.4
Q ss_pred CCCcEEEcccCccccCCCccccCCCCCceeecCCCccc
Q 041065 77 PHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFF 114 (148)
Q Consensus 77 ~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~ 114 (148)
++|++|++++|+++ .+|+.+.+|++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 47899999999998 67878999999999999999988
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.44 E-value=3.9e-08 Score=81.78 Aligned_cols=88 Identities=24% Similarity=0.466 Sum_probs=78.9
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
++++|++++|.+. .+|. .+..+.+|+.|+++.|.+. ..|....++.+|+++.|..|++. ..|.++..+.+|+.|++
T Consensus 46 ~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDL 121 (1081)
T ss_pred eeEEeeccccccc-cCCc-hhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhccccccc
Confidence 4899999999876 6776 7889999999999999997 78888999999999999999998 89999999999999999
Q ss_pred cCccccccCCCCC
Q 041065 133 QLNRLDGSWRMCT 145 (148)
Q Consensus 133 ~~N~l~g~iP~~~ 145 (148)
+.|+|. .+|..+
T Consensus 122 S~N~f~-~~Pl~i 133 (1081)
T KOG0618|consen 122 SFNHFG-PIPLVI 133 (1081)
T ss_pred chhccC-CCchhH
Confidence 999988 888765
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.40 E-value=3.7e-08 Score=75.44 Aligned_cols=84 Identities=24% Similarity=0.360 Sum_probs=66.3
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCC-CcccccCCc-cccCCCCCcEE
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGS-NQFFGNIPA-EVGLLSHLEVL 130 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~-n~l~g~~p~-~~~~l~~L~~L 130 (148)
..++|+|..|.++ .+|...|..++.|+.||||+|.++-.-|..|..+.+|..|-+-+ |+++ .+|. .|++|.+|+-|
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 5788999999998 45555899999999999999999977888999998877766554 8888 5554 67777777666
Q ss_pred EccCcccc
Q 041065 131 HIQLNRLD 138 (148)
Q Consensus 131 ~l~~N~l~ 138 (148)
.+.-|++.
T Consensus 146 llNan~i~ 153 (498)
T KOG4237|consen 146 LLNANHIN 153 (498)
T ss_pred hcChhhhc
Confidence 66655554
No 24
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.39 E-value=1e-06 Score=76.81 Aligned_cols=80 Identities=21% Similarity=0.340 Sum_probs=34.9
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
.++.|++.++.+. .++. .+..+++|+.|+|+++.....+| .+..+++|+.|++++|.....+|..++.+++|+.|++
T Consensus 612 ~L~~L~L~~s~l~-~L~~-~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWD-GVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred CCcEEECcCcccc-cccc-ccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 3455555555443 2332 34444444555544443322333 2444444444444444333344444444444444444
Q ss_pred cCc
Q 041065 133 QLN 135 (148)
Q Consensus 133 ~~N 135 (148)
++|
T Consensus 689 ~~c 691 (1153)
T PLN03210 689 SRC 691 (1153)
T ss_pred CCC
Confidence 443
No 25
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.38 E-value=1.2e-06 Score=76.45 Aligned_cols=90 Identities=18% Similarity=0.131 Sum_probs=71.0
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|+|+++.....+| .+..+++|+.|++++|.....+|..+.++++|+.|++++|..-+.+|..+ ++++|+.|+
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~ 710 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN 710 (1153)
T ss_pred CCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence 568888998876555666 47788899999999887666888888899999999999875555788766 788899999
Q ss_pred ccCccccccCCCC
Q 041065 132 IQLNRLDGSWRMC 144 (148)
Q Consensus 132 l~~N~l~g~iP~~ 144 (148)
+++|...+.+|..
T Consensus 711 Lsgc~~L~~~p~~ 723 (1153)
T PLN03210 711 LSGCSRLKSFPDI 723 (1153)
T ss_pred CCCCCCccccccc
Confidence 9888766666653
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.33 E-value=1.9e-07 Score=71.64 Aligned_cols=85 Identities=22% Similarity=0.204 Sum_probs=58.5
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|+|++|.+++.-+. .|.++.++++|.|..|++.-.-..-|.++..|+.|+|.+|+++-..|..|..+.+|..|+
T Consensus 274 ~~L~~lnlsnN~i~~i~~~-aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~ 352 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDG-AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLN 352 (498)
T ss_pred ccceEeccCCCccchhhhh-hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeee
Confidence 4677777777777755554 677777777777777777633334466677777777777777766677777777777777
Q ss_pred ccCccc
Q 041065 132 IQLNRL 137 (148)
Q Consensus 132 l~~N~l 137 (148)
|-.|.|
T Consensus 353 l~~Np~ 358 (498)
T KOG4237|consen 353 LLSNPF 358 (498)
T ss_pred hccCcc
Confidence 766654
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.32 E-value=1.3e-06 Score=72.99 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=20.5
Q ss_pred CCceeecCCCcccccCCccccCCCCCcEEEccCccccccCCC
Q 041065 102 NLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRM 143 (148)
Q Consensus 102 ~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 143 (148)
+|+.|++++|+++ .+|..+. .+|+.|++++|+|+ .+|.
T Consensus 263 ~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~ 300 (754)
T PRK15370 263 ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPA 300 (754)
T ss_pred CCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcc
Confidence 4555555555555 3454432 35666666666665 3443
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.32 E-value=1.2e-06 Score=73.19 Aligned_cols=82 Identities=17% Similarity=0.293 Sum_probs=54.6
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
.++.|++++|.++ .+|. .+ .++|+.|++++|.++ .+|..+. .+|+.|+|++|++. .+|..+. .+|+.|++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~-~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 200 QITTLILDNNELK-SLPE-NL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred CCcEEEecCCCCC-cCCh-hh--ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 5777888888777 4554 33 246777777777776 4565443 36777777777777 6666553 46777777
Q ss_pred cCccccccCCCCC
Q 041065 133 QLNRLDGSWRMCT 145 (148)
Q Consensus 133 ~~N~l~g~iP~~~ 145 (148)
++|+++ .+|..+
T Consensus 270 s~N~L~-~LP~~l 281 (754)
T PRK15370 270 FHNKIS-CLPENL 281 (754)
T ss_pred cCCccC-cccccc
Confidence 777777 566544
No 29
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.32 E-value=4.4e-08 Score=65.25 Aligned_cols=87 Identities=23% Similarity=0.358 Sum_probs=73.5
Q ss_pred CCeEEEEcCCCCccceecCCCCC-CCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFS-SFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL 130 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~-~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L 130 (148)
.+++.++|++|.+. .+|. .|. .++.++.+++++|.++ .+|.++..++.|+.++++.|.|. ..|..+..|.+|-.|
T Consensus 53 ~el~~i~ls~N~fk-~fp~-kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPK-KFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred ceEEEEecccchhh-hCCH-HHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 47888999999988 4554 444 4668999999999998 78999999999999999999998 788888888899999
Q ss_pred EccCccccccCCC
Q 041065 131 HIQLNRLDGSWRM 143 (148)
Q Consensus 131 ~l~~N~l~g~iP~ 143 (148)
+..+|... +||-
T Consensus 129 ds~~na~~-eid~ 140 (177)
T KOG4579|consen 129 DSPENARA-EIDV 140 (177)
T ss_pred cCCCCccc-cCcH
Confidence 99888876 6663
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.32 E-value=3.2e-07 Score=71.09 Aligned_cols=88 Identities=23% Similarity=0.340 Sum_probs=72.3
Q ss_pred CeEEEEcCCCCccceecCCCCCCCC-CCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFP-HLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~-~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.++.+++.+|.+. .++. ....+. +|+.|+++.|.+. .+|..+..++.|+.|++++|+++ .+|...+.++.|+.|+
T Consensus 117 ~l~~L~l~~n~i~-~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 117 NLTSLDLDNNNIT-DIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred ceeEEecCCcccc-cCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 5788888888887 4553 455563 8999999999997 67677889999999999999998 7887777888999999
Q ss_pred ccCccccccCCCCC
Q 041065 132 IQLNRLDGSWRMCT 145 (148)
Q Consensus 132 l~~N~l~g~iP~~~ 145 (148)
+++|+++ .+|..+
T Consensus 193 ls~N~i~-~l~~~~ 205 (394)
T COG4886 193 LSGNKIS-DLPPEI 205 (394)
T ss_pred ccCCccc-cCchhh
Confidence 9999998 888753
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.25 E-value=3.6e-07 Score=68.42 Aligned_cols=85 Identities=22% Similarity=0.310 Sum_probs=39.9
Q ss_pred CeEEEEcCCCCccce----ecCCCCCCCCCCcEEEcccCccccC----CCccccCCCCCceeecCCCccccc----CCcc
Q 041065 53 RVINISLPNRGVNGT----LHDFSFSSFPHLAYLDLTWNGFFGT----IPPQISNLSNLRYIYLGSNQFFGN----IPAE 120 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~ls~n~l~g~----~p~~ 120 (148)
+++.|++++|.+++. +.. .+..++.|++|++++|.+++. ++..+..+++|++|++++|.+++. +...
T Consensus 138 ~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEALAK-ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CceEEEcCCCcCCchHHHHHHH-HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 455555555555421 111 233444555555555555432 222233344556666665555422 2223
Q ss_pred ccCCCCCcEEEccCcccc
Q 041065 121 VGLLSHLEVLHIQLNRLD 138 (148)
Q Consensus 121 ~~~l~~L~~L~l~~N~l~ 138 (148)
+..+++|++|++++|.++
T Consensus 217 ~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 217 LASLKSLEVLNLGDNNLT 234 (319)
T ss_pred hcccCCCCEEecCCCcCc
Confidence 344555666666655554
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.23 E-value=2.9e-07 Score=68.80 Aligned_cols=63 Identities=22% Similarity=0.299 Sum_probs=29.6
Q ss_pred CCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCcccc
Q 041065 73 FSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLD 138 (148)
Q Consensus 73 ~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~ 138 (148)
+..+++|+.||||+|.++ .+-..-.++-+.+.|.|+.|.+. .+ ..++++.+|..||+++|++.
T Consensus 325 La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hh-hhhHhhhhheeccccccchh
Confidence 334444444444444443 11111122333444444444443 11 23556667778888888765
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.16 E-value=4.8e-07 Score=67.72 Aligned_cols=62 Identities=24% Similarity=0.296 Sum_probs=29.6
Q ss_pred CCCcEEEcccCccccC----CCccccCCCCCceeecCCCccccc----CCccccCCCCCcEEEccCcccc
Q 041065 77 PHLAYLDLTWNGFFGT----IPPQISNLSNLRYIYLGSNQFFGN----IPAEVGLLSHLEVLHIQLNRLD 138 (148)
Q Consensus 77 ~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~l~~N~l~ 138 (148)
++|+.|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 4555555555555422 122233444555555555555421 2223334445666666655554
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.15 E-value=2.4e-07 Score=73.90 Aligned_cols=88 Identities=25% Similarity=0.418 Sum_probs=51.6
Q ss_pred eEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCC----------------------CceeecCCC
Q 041065 54 VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSN----------------------LRYIYLGSN 111 (148)
Q Consensus 54 l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~----------------------L~~L~ls~n 111 (148)
++.|.+++|+++ .+|. .++.+..|..||.+.|.+. .+|..++.+.+ |..||+|.|
T Consensus 145 Lkvli~sNNkl~-~lp~-~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScN 221 (722)
T KOG0532|consen 145 LKVLIVSNNKLT-SLPE-EIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCN 221 (722)
T ss_pred ceeEEEecCccc-cCCc-ccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccC
Confidence 555566666655 3444 4555556666666666554 34444443333 556666777
Q ss_pred cccccCCccccCCCCCcEEEccCccccccCCCCCc
Q 041065 112 QFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTC 146 (148)
Q Consensus 112 ~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~ 146 (148)
+++ .||..|.+|+.|++|-|.+|.+. +=|..||
T Consensus 222 kis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 222 KIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred cee-ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence 766 66777777777777777777666 4444443
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.08 E-value=1.6e-06 Score=73.60 Aligned_cols=88 Identities=25% Similarity=0.385 Sum_probs=69.6
Q ss_pred CeEEEEcCCCC--ccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065 53 RVINISLPNRG--VNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL 130 (148)
Q Consensus 53 ~l~~L~l~~n~--l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L 130 (148)
.+++|-+.+|. +. .++...|..++.|++|||++|.--+.+|..++.|-+|++|++++..++ .+|..+++|..|.+|
T Consensus 546 ~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred ccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 57788787775 33 333224777999999999998777789999999999999999999998 899999999999999
Q ss_pred EccCccccccCC
Q 041065 131 HIQLNRLDGSWR 142 (148)
Q Consensus 131 ~l~~N~l~g~iP 142 (148)
++..+.....+|
T Consensus 624 nl~~~~~l~~~~ 635 (889)
T KOG4658|consen 624 NLEVTGRLESIP 635 (889)
T ss_pred cccccccccccc
Confidence 998766443443
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.05 E-value=2.2e-07 Score=74.08 Aligned_cols=62 Identities=21% Similarity=0.321 Sum_probs=47.4
Q ss_pred CCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCcccc---CCCCCcEEEccCcc
Q 041065 72 SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVG---LLSHLEVLHIQLNR 136 (148)
Q Consensus 72 ~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~---~l~~L~~L~l~~N~ 136 (148)
++..| .|..||+|.|+++ .+|-.|.+|+.|++|-|.+|.+. .-|..+. ...=.++|+..-.+
T Consensus 207 El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 207 ELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred HHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 45544 4788999999998 89999999999999999999998 5566553 33335666665553
No 37
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.02 E-value=1.6e-05 Score=66.69 Aligned_cols=13 Identities=23% Similarity=0.335 Sum_probs=6.7
Q ss_pred CCceeecCCCccc
Q 041065 102 NLRYIYLGSNQFF 114 (148)
Q Consensus 102 ~L~~L~ls~n~l~ 114 (148)
+|+.|++++|+++
T Consensus 303 ~L~~LdLS~N~L~ 315 (788)
T PRK15387 303 GLQELSVSDNQLA 315 (788)
T ss_pred ccceeECCCCccc
Confidence 4555555555554
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.00 E-value=1.6e-06 Score=73.47 Aligned_cols=83 Identities=27% Similarity=0.366 Sum_probs=69.8
Q ss_pred CCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065 51 AGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL 130 (148)
Q Consensus 51 ~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L 130 (148)
...++.|||++|.--+.+|. .++.|-+|++|++++..+. .+|..+.+|..|.+|++..+.....+|..+..|.+|++|
T Consensus 570 m~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred CcceEEEECCCCCccCcCCh-HHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence 35788999998877778887 8899999999999999998 889999999999999999887665667777778999999
Q ss_pred EccCc
Q 041065 131 HIQLN 135 (148)
Q Consensus 131 ~l~~N 135 (148)
.+..-
T Consensus 648 ~l~~s 652 (889)
T KOG4658|consen 648 RLPRS 652 (889)
T ss_pred Eeecc
Confidence 88653
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.00 E-value=1.5e-06 Score=67.26 Aligned_cols=82 Identities=32% Similarity=0.549 Sum_probs=70.0
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
+++.|++++|.+. .+|. .+..++.|+.|+++.|.++ .+|...+.++.|+.|++++|+++ .+|..+..+..|+.+.+
T Consensus 141 nL~~L~l~~N~i~-~l~~-~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 141 NLKELDLSDNKIE-SLPS-PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDL 216 (394)
T ss_pred hcccccccccchh-hhhh-hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhh
Confidence 6899999999987 4543 6889999999999999998 77777768899999999999999 88888777777999999
Q ss_pred cCcccc
Q 041065 133 QLNRLD 138 (148)
Q Consensus 133 ~~N~l~ 138 (148)
++|+..
T Consensus 217 ~~N~~~ 222 (394)
T COG4886 217 SNNSII 222 (394)
T ss_pred cCCcce
Confidence 999543
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.96 E-value=2.7e-06 Score=63.68 Aligned_cols=81 Identities=19% Similarity=0.263 Sum_probs=55.1
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
.++.+||++|.++ .+.. +..-+|.++.|++|+|.+. . -..+..+++|+.||||+|.++ .+-..--++-+++.|.|
T Consensus 285 ~LtelDLS~N~I~-~iDE-SvKL~Pkir~L~lS~N~i~-~-v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDE-SVKLAPKLRRLILSQNRIR-T-VQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhccccccchh-hhhh-hhhhccceeEEecccccee-e-ehhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 3567778887776 4444 6667777888888888775 2 223667777888888888777 44444445667777777
Q ss_pred cCcccc
Q 041065 133 QLNRLD 138 (148)
Q Consensus 133 ~~N~l~ 138 (148)
++|.+.
T Consensus 360 a~N~iE 365 (490)
T KOG1259|consen 360 AQNKIE 365 (490)
T ss_pred hhhhHh
Confidence 777654
No 41
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.70 E-value=4.1e-06 Score=56.02 Aligned_cols=93 Identities=22% Similarity=0.370 Sum_probs=70.6
Q ss_pred eCCCCCeEEEEcCCCCccceecC--CCCCCCCCCcEEEcccCccccCCCccccC-CCCCceeecCCCcccccCCccccCC
Q 041065 48 CNDAGRVINISLPNRGVNGTLHD--FSFSSFPHLAYLDLTWNGFFGTIPPQISN-LSNLRYIYLGSNQFFGNIPAEVGLL 124 (148)
Q Consensus 48 c~~~~~l~~L~l~~n~l~~~~p~--~~~~~l~~L~~L~ls~n~l~g~~p~~~~~-l~~L~~L~ls~n~l~g~~p~~~~~l 124 (148)
|.....+..++|+++.+- .+++ ..+....+|+.++|++|.|. .+|+.|.. .+.++.++|++|.++ .+|.++..+
T Consensus 23 cedakE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam 99 (177)
T KOG4579|consen 23 CEDAKELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAM 99 (177)
T ss_pred hHHHHHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhh
Confidence 443344566777777653 2222 03456677888999999998 67777654 468999999999999 899999999
Q ss_pred CCCcEEEccCccccccCCCC
Q 041065 125 SHLEVLHIQLNRLDGSWRMC 144 (148)
Q Consensus 125 ~~L~~L~l~~N~l~g~iP~~ 144 (148)
+.|+.|+++.|.|. ..|.-
T Consensus 100 ~aLr~lNl~~N~l~-~~p~v 118 (177)
T KOG4579|consen 100 PALRSLNLRFNPLN-AEPRV 118 (177)
T ss_pred HHhhhcccccCccc-cchHH
Confidence 99999999999988 55543
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.64 E-value=3.9e-06 Score=69.05 Aligned_cols=81 Identities=20% Similarity=0.338 Sum_probs=58.1
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCc-cccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPP-QISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL 130 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~-~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L 130 (148)
..++.|+|++|.++. +. .+..+++|++|||++|.+. .+|. ....+. |+.|.+.+|.++ .+ ..+.+|.+|+.|
T Consensus 187 ~ale~LnLshNk~~~-v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~-tL-~gie~LksL~~L 259 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTK-VD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT-TL-RGIENLKSLYGL 259 (1096)
T ss_pred HHhhhhccchhhhhh-hH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH-hh-hhHHhhhhhhcc
Confidence 357888889888873 32 5778888999999999887 5553 233343 788888888876 22 346778888888
Q ss_pred EccCccccc
Q 041065 131 HIQLNRLDG 139 (148)
Q Consensus 131 ~l~~N~l~g 139 (148)
|+++|-+++
T Consensus 260 DlsyNll~~ 268 (1096)
T KOG1859|consen 260 DLSYNLLSE 268 (1096)
T ss_pred chhHhhhhc
Confidence 888887664
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.62 E-value=3.8e-05 Score=60.20 Aligned_cols=81 Identities=23% Similarity=0.312 Sum_probs=61.1
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
..++.+++.+|.+..... .+..+++|++|++++|.++...+ +..++.|+.|++++|.++ .+ ..+..+.+|+.++
T Consensus 95 ~~l~~l~l~~n~i~~i~~--~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIEN--LLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS-DI-SGLESLKSLKLLD 168 (414)
T ss_pred cceeeeeccccchhhccc--chhhhhcchheeccccccccccc--hhhccchhhheeccCcch-hc-cCCccchhhhccc
Confidence 567888888888874322 26778889999999998874433 566777889999999887 34 3355588888889
Q ss_pred ccCcccc
Q 041065 132 IQLNRLD 138 (148)
Q Consensus 132 l~~N~l~ 138 (148)
+++|.+.
T Consensus 169 l~~n~i~ 175 (414)
T KOG0531|consen 169 LSYNRIV 175 (414)
T ss_pred CCcchhh
Confidence 9988877
No 44
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.48 E-value=0.00022 Score=50.61 Aligned_cols=82 Identities=22% Similarity=0.260 Sum_probs=55.2
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCC--ccccCCCCCcEE
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIP--AEVGLLSHLEVL 130 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p--~~~~~l~~L~~L 130 (148)
+...+||++|.+. .++ .|..++.|+.|.+.+|.++...|.--..+++|+.|.|.+|.+. .+- ..+..++.|++|
T Consensus 43 ~~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccccchh-hcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence 4567788888765 333 4677788888888888887444443344577888888888776 222 235566777887
Q ss_pred EccCcccc
Q 041065 131 HIQLNRLD 138 (148)
Q Consensus 131 ~l~~N~l~ 138 (148)
.+-+|..+
T Consensus 119 tll~Npv~ 126 (233)
T KOG1644|consen 119 TLLGNPVE 126 (233)
T ss_pred eecCCchh
Confidence 77777654
No 45
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.38 E-value=8.1e-05 Score=33.75 Aligned_cols=20 Identities=30% Similarity=0.238 Sum_probs=11.2
Q ss_pred CcEEEccCccccccCCCCCcC
Q 041065 127 LEVLHIQLNRLDGSWRMCTCT 147 (148)
Q Consensus 127 L~~L~l~~N~l~g~iP~~~~~ 147 (148)
|++|++++|+|+ .||+.|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 455555555555 55555543
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.25 E-value=1.5e-05 Score=65.75 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=60.5
Q ss_pred eEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCcc-ccCCCCCcEEEc
Q 041065 54 VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAE-VGLLSHLEVLHI 132 (148)
Q Consensus 54 l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~-~~~l~~L~~L~l 132 (148)
+..++.+.|.+. .+.. ++.-++.++.|+|++|+++.. +.+..++.|++|||++|.+. .+|.. ...+ .|+.|.+
T Consensus 166 L~~a~fsyN~L~-~mD~-SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDE-SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred HhhhhcchhhHH-hHHH-HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeee
Confidence 455666777765 3443 677789999999999999743 36788999999999999998 77763 2223 4999999
Q ss_pred cCcccc
Q 041065 133 QLNRLD 138 (148)
Q Consensus 133 ~~N~l~ 138 (148)
++|.++
T Consensus 240 rnN~l~ 245 (1096)
T KOG1859|consen 240 RNNALT 245 (1096)
T ss_pred cccHHH
Confidence 999776
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.21 E-value=0.00011 Score=57.63 Aligned_cols=84 Identities=23% Similarity=0.245 Sum_probs=64.0
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
.+..+.+..|.+..... .+..+.+|+.+++..|.+.. +...+..+++|++|++++|.++. + ..+..++.|+.|++
T Consensus 73 ~l~~l~l~~n~i~~~~~--~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~-i-~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILN--HLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITK-L-EGLSTLTLLKELNL 147 (414)
T ss_pred hHHhhccchhhhhhhhc--ccccccceeeeeccccchhh-cccchhhhhcchheecccccccc-c-cchhhccchhhhee
Confidence 34555567776664222 47889999999999999983 44337789999999999999984 3 23667788999999
Q ss_pred cCccccccCC
Q 041065 133 QLNRLDGSWR 142 (148)
Q Consensus 133 ~~N~l~g~iP 142 (148)
++|.++ .+.
T Consensus 148 ~~N~i~-~~~ 156 (414)
T KOG0531|consen 148 SGNLIS-DIS 156 (414)
T ss_pred ccCcch-hcc
Confidence 999988 443
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=4.1e-05 Score=59.68 Aligned_cols=64 Identities=23% Similarity=0.303 Sum_probs=38.7
Q ss_pred CCCCCCcEEEcccCccccCCC--ccccCCCCCceeecCCCcccc-cCCcc-----ccCCCCCcEEEccCcccc
Q 041065 74 SSFPHLAYLDLTWNGFFGTIP--PQISNLSNLRYIYLGSNQFFG-NIPAE-----VGLLSHLEVLHIQLNRLD 138 (148)
Q Consensus 74 ~~l~~L~~L~ls~n~l~g~~p--~~~~~l~~L~~L~ls~n~l~g-~~p~~-----~~~l~~L~~L~l~~N~l~ 138 (148)
.-+..|+.|||++|++- ..+ ...+.++.|..|+++.+.++. .+|+. ...+++|++|++..|++.
T Consensus 243 ~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 243 KILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 34556666777776664 222 235566777777777776653 12332 244567888888888774
No 49
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.18 E-value=0.00014 Score=32.96 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=11.7
Q ss_pred CceeecCCCcccccCCccccC
Q 041065 103 LRYIYLGSNQFFGNIPAEVGL 123 (148)
Q Consensus 103 L~~L~ls~n~l~g~~p~~~~~ 123 (148)
|++||+++|+++ .+|..|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 566666666666 56655443
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.11 E-value=0.00028 Score=51.58 Aligned_cols=80 Identities=23% Similarity=0.281 Sum_probs=53.3
Q ss_pred eEEEEcCCCCccceecCCCCCCCCCCcEEEcccC--ccccCCCccccCCCCCceeecCCCcccccCCcc---ccCCCCCc
Q 041065 54 VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWN--GFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAE---VGLLSHLE 128 (148)
Q Consensus 54 l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n--~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~---~~~l~~L~ 128 (148)
+..+.+.+.+++. +. .+-.|++|+.|+++.| .+++.++...-.+++|+++++++|++. ++++ +..+.+|.
T Consensus 45 le~ls~~n~gltt-~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 45 LELLSVINVGLTT-LT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLK 119 (260)
T ss_pred hhhhhhhccceee-cc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhhcchh
Confidence 4444555555542 21 4667888899999999 555555555566789999999999886 2343 34556777
Q ss_pred EEEccCcccc
Q 041065 129 VLHIQLNRLD 138 (148)
Q Consensus 129 ~L~l~~N~l~ 138 (148)
.|++.++..+
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 8888776544
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.00014 Score=54.63 Aligned_cols=86 Identities=21% Similarity=0.267 Sum_probs=59.5
Q ss_pred CCeEEEEcCCCCccc--eecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccc-cCCccccCCCCCc
Q 041065 52 GRVINISLPNRGVNG--TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFG-NIPAEVGLLSHLE 128 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~--~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g-~~p~~~~~l~~L~ 128 (148)
.+|+.++|.+|.++. .+.. .+.+||.|+.|+++.|++...|-..-..+.+|+.|-|.+..+.- .....+..++.++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 368889999998873 2222 45688999999999999875443222356788888888877653 2334566777788
Q ss_pred EEEccCcccc
Q 041065 129 VLHIQLNRLD 138 (148)
Q Consensus 129 ~L~l~~N~l~ 138 (148)
.|+++.|.+.
T Consensus 150 elHmS~N~~r 159 (418)
T KOG2982|consen 150 ELHMSDNSLR 159 (418)
T ss_pred hhhhccchhh
Confidence 8888888543
No 52
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00026 Score=55.29 Aligned_cols=86 Identities=20% Similarity=0.263 Sum_probs=38.9
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCC--ccccCCCCCcE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIP--AEVGLLSHLEV 129 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p--~~~~~l~~L~~ 129 (148)
.+++.|.++.++++..--...+..+|+|+.|+|..|...+.-......+..|+.|||++|++- .++ ...+.++.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhh
Confidence 355555555555552211112344555555555555321111122233445555555555554 233 23444555555
Q ss_pred EEccCcccc
Q 041065 130 LHIQLNRLD 138 (148)
Q Consensus 130 L~l~~N~l~ 138 (148)
|+++.+.++
T Consensus 276 Lnls~tgi~ 284 (505)
T KOG3207|consen 276 LNLSSTGIA 284 (505)
T ss_pred hhccccCcc
Confidence 555554443
No 53
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=4.3e-05 Score=56.74 Aligned_cols=82 Identities=21% Similarity=0.252 Sum_probs=52.5
Q ss_pred eeCCCCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCC-ccccCCCCCceeecCCCcccccCCcc-----
Q 041065 47 PCNDAGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIP-PQISNLSNLRYIYLGSNQFFGNIPAE----- 120 (148)
Q Consensus 47 ~c~~~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p-~~~~~l~~L~~L~ls~n~l~g~~p~~----- 120 (148)
.|..+..+++|.|+-|.++.. . .+..++.|++|+|..|.|..... .-+.++++|+.|-|..|.-.|.-+..
T Consensus 36 ic~kMp~lEVLsLSvNkIssL-~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~V 112 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKISSL-A--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKV 112 (388)
T ss_pred HHHhcccceeEEeeccccccc-h--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHH
Confidence 465666777788877777632 2 36677777788888877753211 12457777777777777777665543
Q ss_pred ccCCCCCcEEE
Q 041065 121 VGLLSHLEVLH 131 (148)
Q Consensus 121 ~~~l~~L~~L~ 131 (148)
+.-|++|+.||
T Consensus 113 LR~LPnLkKLD 123 (388)
T KOG2123|consen 113 LRVLPNLKKLD 123 (388)
T ss_pred HHHcccchhcc
Confidence 34466666654
No 54
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.52 E-value=4.4e-05 Score=55.35 Aligned_cols=83 Identities=18% Similarity=0.136 Sum_probs=71.9
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.||++.|.+.. +-. .|..++.+..||++.|.+. ..|..++++..+..+++..|.++ ..|.+++.+++++.++
T Consensus 42 kr~tvld~~s~r~vn-~~~-n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVN-LGK-NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred ceeeeehhhhhHHHh-hcc-chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 579999999998763 222 5777888999999999987 78999999999999999999998 8999999999999999
Q ss_pred ccCcccc
Q 041065 132 IQLNRLD 138 (148)
Q Consensus 132 l~~N~l~ 138 (148)
+-.|.|.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9998876
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.45 E-value=0.0013 Score=55.01 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=19.7
Q ss_pred ccCCCCCceeecCCCcccccCC---c----cccCCCCCcEEEccCcccc
Q 041065 97 ISNLSNLRYIYLGSNQFFGNIP---A----EVGLLSHLEVLHIQLNRLD 138 (148)
Q Consensus 97 ~~~l~~L~~L~ls~n~l~g~~p---~----~~~~l~~L~~L~l~~N~l~ 138 (148)
+.+|++|+.||+|...... .+ . .-..|++|++||.+++.+.
T Consensus 216 LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchh
Confidence 4455566666666544331 11 1 1122556666666655444
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.41 E-value=0.0023 Score=46.85 Aligned_cols=64 Identities=20% Similarity=0.303 Sum_probs=46.3
Q ss_pred CCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCC--cccccCCccccCCCCCcEEEccCcccc
Q 041065 73 FSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSN--QFFGNIPAEVGLLSHLEVLHIQLNRLD 138 (148)
Q Consensus 73 ~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n--~l~g~~p~~~~~l~~L~~L~l~~N~l~ 138 (148)
...+..|+.+.+.+..++. -..+..|++|++|.+|.| +.++.++.....+++|+++++++|++.
T Consensus 39 ~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3345556666666666652 124668899999999999 555555555556699999999999986
No 57
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.32 E-value=0.0023 Score=27.01 Aligned_cols=13 Identities=38% Similarity=0.577 Sum_probs=4.7
Q ss_pred CCcEEEccCcccc
Q 041065 126 HLEVLHIQLNRLD 138 (148)
Q Consensus 126 ~L~~L~l~~N~l~ 138 (148)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444444
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.15 E-value=0.003 Score=52.85 Aligned_cols=83 Identities=22% Similarity=0.294 Sum_probs=62.1
Q ss_pred CCeEEEEcCCCCccce-ecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccc-cCCccccCCCCCcE
Q 041065 52 GRVINISLPNRGVNGT-LHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFG-NIPAEVGLLSHLEV 129 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~-~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g-~~p~~~~~l~~L~~ 129 (148)
+++++|.+.+..+... +.. -..++++|..||+|+.+++.. .++++|++|+.|.+-+=.|.. .--..+.+|++|++
T Consensus 148 PsL~sL~i~~~~~~~~dF~~-lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQ-LCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred cccceEEecCceecchhHHH-HhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 6789999888776432 222 456899999999999998733 578899999999888766652 11235778999999
Q ss_pred EEccCccc
Q 041065 130 LHIQLNRL 137 (148)
Q Consensus 130 L~l~~N~l 137 (148)
||+|....
T Consensus 225 LDIS~~~~ 232 (699)
T KOG3665|consen 225 LDISRDKN 232 (699)
T ss_pred eecccccc
Confidence 99997644
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.08 E-value=0.0082 Score=42.76 Aligned_cols=61 Identities=21% Similarity=0.302 Sum_probs=47.0
Q ss_pred CCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCcccc
Q 041065 76 FPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLD 138 (148)
Q Consensus 76 l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~ 138 (148)
+.....+||+.|.+. .+ +.|..+++|.+|.+++|+++..-|.--..+++|+.|.|.+|.+.
T Consensus 41 ~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 345678999999985 22 35778899999999999999444443344578999999999876
No 60
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.89 E-value=0.0059 Score=28.49 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=8.3
Q ss_pred CCCcEEEccCccccccCCC
Q 041065 125 SHLEVLHIQLNRLDGSWRM 143 (148)
Q Consensus 125 ~~L~~L~l~~N~l~g~iP~ 143 (148)
++|+.|+|++|+++ .||+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 34444444444444 4443
No 61
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.89 E-value=0.0059 Score=28.49 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=8.3
Q ss_pred CCCcEEEccCccccccCCC
Q 041065 125 SHLEVLHIQLNRLDGSWRM 143 (148)
Q Consensus 125 ~~L~~L~l~~N~l~g~iP~ 143 (148)
++|+.|+|++|+++ .||+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 34444444444444 4443
No 62
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.55 E-value=0.0019 Score=49.22 Aligned_cols=84 Identities=23% Similarity=0.228 Sum_probs=36.1
Q ss_pred CeEEEEcCCCCccc----eecCCCCCCCCCCcEEEcccCccccCCCccc-----cCCCCCceeecCCCcccc----cCCc
Q 041065 53 RVINISLPNRGVNG----TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-----SNLSNLRYIYLGSNQFFG----NIPA 119 (148)
Q Consensus 53 ~l~~L~l~~n~l~~----~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~-----~~l~~L~~L~ls~n~l~g----~~p~ 119 (148)
+++.|+|..|-++. .+.. .+..+++|+.|+++++.+...-...| ...++|+.+.+.+|.++- .+-.
T Consensus 214 ~LevLdl~DNtft~egs~~Lak-aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~ 292 (382)
T KOG1909|consen 214 HLEVLDLRDNTFTLEGSVALAK-ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA 292 (382)
T ss_pred cceeeecccchhhhHHHHHHHH-HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH
Confidence 45555555554431 1111 34444555555555554432211111 113455555555555541 1111
Q ss_pred cccCCCCCcEEEccCccc
Q 041065 120 EVGLLSHLEVLHIQLNRL 137 (148)
Q Consensus 120 ~~~~l~~L~~L~l~~N~l 137 (148)
.+...+.|+.|+|++|.+
T Consensus 293 ~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 293 CMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcchhhHHhcCCcccc
Confidence 233345555555555555
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.49 E-value=0.031 Score=44.07 Aligned_cols=60 Identities=12% Similarity=0.155 Sum_probs=35.9
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccC-ccccCCCccccCCCCCceeecCCC-cccccCCcc
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWN-GFFGTIPPQISNLSNLRYIYLGSN-QFFGNIPAE 120 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n-~l~g~~p~~~~~l~~L~~L~ls~n-~l~g~~p~~ 120 (148)
..++.|+++++.+. .+|. + ..+|+.|.++++ .++ .+|..+ .++|++|++++| .+. .+|..
T Consensus 52 ~~l~~L~Is~c~L~-sLP~--L--P~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP~s 113 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV--L--PNELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLPES 113 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC--C--CCCCcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-ccccc
Confidence 35678888888765 2331 1 235888888763 333 455444 256788888877 444 45543
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.40 E-value=0.017 Score=43.20 Aligned_cols=66 Identities=29% Similarity=0.363 Sum_probs=43.5
Q ss_pred CCCCCCCCcEEEcccCccccCCCcc----ccCCCCCceeecCCCcccccCCc-cc-------------cCCCCCcEEEcc
Q 041065 72 SFSSFPHLAYLDLTWNGFFGTIPPQ----ISNLSNLRYIYLGSNQFFGNIPA-EV-------------GLLSHLEVLHIQ 133 (148)
Q Consensus 72 ~~~~l~~L~~L~ls~n~l~g~~p~~----~~~l~~L~~L~ls~n~l~g~~p~-~~-------------~~l~~L~~L~l~ 133 (148)
.+..+|+|+.++||.|.|....|+. +..-+.|.+|.+++|.+. ++-. .+ .+-+.|+++...
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 4567788888888888887666654 345577888888888764 2221 12 234567777777
Q ss_pred Ccccc
Q 041065 134 LNRLD 138 (148)
Q Consensus 134 ~N~l~ 138 (148)
.|++.
T Consensus 166 rNRle 170 (388)
T COG5238 166 RNRLE 170 (388)
T ss_pred cchhc
Confidence 77665
No 65
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.26 E-value=0.0059 Score=46.66 Aligned_cols=85 Identities=25% Similarity=0.353 Sum_probs=52.5
Q ss_pred CeEEEEcCCCCccc----eecCCCCCCCCCCcEEEcccCccccC----CCccccCCCCCceeecCCCcccccCC----cc
Q 041065 53 RVINISLPNRGVNG----TLHDFSFSSFPHLAYLDLTWNGFFGT----IPPQISNLSNLRYIYLGSNQFFGNIP----AE 120 (148)
Q Consensus 53 ~l~~L~l~~n~l~~----~~p~~~~~~l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~ls~n~l~g~~p----~~ 120 (148)
.+..+.+..|++.. .+.. .+..+++|+.|||..|.|+-. +...+..+++|+.|+++++.++..-- ..
T Consensus 186 ~leevr~~qN~I~~eG~~al~e-al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAE-ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred ccceEEEecccccCchhHHHHH-HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 45556666665431 1111 456778888888888877532 23445667788888888887763211 11
Q ss_pred c-cCCCCCcEEEccCcccc
Q 041065 121 V-GLLSHLEVLHIQLNRLD 138 (148)
Q Consensus 121 ~-~~l~~L~~L~l~~N~l~ 138 (148)
+ ...++|++|.+.+|.++
T Consensus 265 l~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HhccCCCCceeccCcchhH
Confidence 2 23567888888888765
No 66
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.88 E-value=0.025 Score=26.25 Aligned_cols=20 Identities=40% Similarity=0.600 Sum_probs=15.0
Q ss_pred CCCCceeecCCCcccccCCcc
Q 041065 100 LSNLRYIYLGSNQFFGNIPAE 120 (148)
Q Consensus 100 l~~L~~L~ls~n~l~g~~p~~ 120 (148)
+++|++|+|++|+++ .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 467888888888888 66654
No 67
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.88 E-value=0.025 Score=26.25 Aligned_cols=20 Identities=40% Similarity=0.600 Sum_probs=15.0
Q ss_pred CCCCceeecCCCcccccCCcc
Q 041065 100 LSNLRYIYLGSNQFFGNIPAE 120 (148)
Q Consensus 100 l~~L~~L~ls~n~l~g~~p~~ 120 (148)
+++|++|+|++|+++ .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 467888888888888 66654
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.00 E-value=0.0025 Score=47.61 Aligned_cols=90 Identities=21% Similarity=0.291 Sum_probs=69.4
Q ss_pred eCCCCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCC--ccccCCC
Q 041065 48 CNDAGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIP--AEVGLLS 125 (148)
Q Consensus 48 c~~~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p--~~~~~l~ 125 (148)
|.....++.|+.-++++.. +. ....|+.|++|.||-|.++..-| +..+++|+.|+|-.|.+. .+- ..+.+++
T Consensus 15 ~sdl~~vkKLNcwg~~L~D-Is--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlp 88 (388)
T KOG2123|consen 15 CSDLENVKKLNCWGCGLDD-IS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLP 88 (388)
T ss_pred hhHHHHhhhhcccCCCccH-HH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCc
Confidence 4333467788888888773 22 45689999999999999984443 788999999999999987 333 2567889
Q ss_pred CCcEEEccCccccccCCC
Q 041065 126 HLEVLHIQLNRLDGSWRM 143 (148)
Q Consensus 126 ~L~~L~l~~N~l~g~iP~ 143 (148)
+|+.|-|..|...|.-+.
T Consensus 89 sLr~LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQ 106 (388)
T ss_pred hhhhHhhccCCcccccch
Confidence 999999999988776543
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.90 E-value=0.027 Score=42.13 Aligned_cols=87 Identities=15% Similarity=0.211 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCCCccce----ecCCCCCCCCCCcEEEcccCccc---cCCCc-------cccCCCCCceeecCCCccccc
Q 041065 51 AGRVINISLPNRGVNGT----LHDFSFSSFPHLAYLDLTWNGFF---GTIPP-------QISNLSNLRYIYLGSNQFFGN 116 (148)
Q Consensus 51 ~~~l~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~ls~n~l~---g~~p~-------~~~~l~~L~~L~ls~n~l~g~ 116 (148)
+..++.++|++|.+... +.. .+.+-.+|+..+++.-... ..++. .+-++++|+..+||+|-|...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~-~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCN-VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHH-HHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 45789999999987632 222 3555677888777764321 12332 345789999999999999888
Q ss_pred CCccc----cCCCCCcEEEccCcccc
Q 041065 117 IPAEV----GLLSHLEVLHIQLNRLD 138 (148)
Q Consensus 117 ~p~~~----~~l~~L~~L~l~~N~l~ 138 (148)
.|..+ ..-+.|.+|.+++|-+-
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCC
Confidence 87754 55678999999998653
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.78 E-value=0.082 Score=41.75 Aligned_cols=66 Identities=14% Similarity=0.114 Sum_probs=45.8
Q ss_pred CCCCCCCcEEEcccCccccCCCccccCCCCCceeecCC-CcccccCCccccCCCCCcEEEccCc-cccccCCCCCc
Q 041065 73 FSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGS-NQFFGNIPAEVGLLSHLEVLHIQLN-RLDGSWRMCTC 146 (148)
Q Consensus 73 ~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~-n~l~g~~p~~~~~l~~L~~L~l~~N-~l~g~iP~~~~ 146 (148)
+..+..++.|+++++.++ .+|. -..+|+.|.+++ ++++ .+|..+. .+|+.|++++| .+. .+|+.+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-ccccccc
Confidence 444578999999999887 5662 235799999987 4554 6776542 47888888877 443 6666554
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.07 E-value=0.0016 Score=47.51 Aligned_cols=73 Identities=19% Similarity=0.168 Sum_probs=62.0
Q ss_pred CCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCccccccCCCCCcC
Q 041065 72 SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTCT 147 (148)
Q Consensus 72 ~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~ 147 (148)
.+..+...+.||++.|++. .+-..|..++.|..|+++.|.+. ..|..++.+..++.+++..|..+ ..|.++++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k 109 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKK 109 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccc
Confidence 5777888999999999986 45556778899999999999998 88999999999999999999887 77776654
No 72
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.03 E-value=0.039 Score=41.82 Aligned_cols=64 Identities=27% Similarity=0.230 Sum_probs=46.6
Q ss_pred CCCCCcEEEcccCcccc--CCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCcccc
Q 041065 75 SFPHLAYLDLTWNGFFG--TIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLD 138 (148)
Q Consensus 75 ~l~~L~~L~ls~n~l~g--~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~ 138 (148)
..+.++.+||.+|.++. .+-.-+.+|+.|+.|+++.|.++..|-..=..+.+|++|.|.+..+.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS 134 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence 45678999999999973 23334568999999999999998544322134568899988776554
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.29 E-value=0.011 Score=27.04 Aligned_cols=14 Identities=36% Similarity=0.413 Sum_probs=6.0
Q ss_pred CCCceeecCCCccc
Q 041065 101 SNLRYIYLGSNQFF 114 (148)
Q Consensus 101 ~~L~~L~ls~n~l~ 114 (148)
++|++|+|++|+++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555544
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.26 E-value=0.68 Score=29.63 Aligned_cols=76 Identities=22% Similarity=0.289 Sum_probs=29.1
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCC-ccccCCCCCcEEE
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIP-AEVGLLSHLEVLH 131 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p-~~~~~l~~L~~L~ 131 (148)
.++.+.+..+ +. .++...|..++.++.+.+.. .+...-...|..+++|+.+++..+ +. .++ ..+.+. .|+.+.
T Consensus 36 ~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~ 109 (129)
T PF13306_consen 36 SLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEIN 109 (129)
T ss_dssp T-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--B-EEHTTTTTT--T--EEE
T ss_pred cccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccccccccCcc-cc-EEchhhhcCC-CceEEE
Confidence 3455555543 33 22322455555566666644 222112223444566666666544 33 222 234443 555555
Q ss_pred ccC
Q 041065 132 IQL 134 (148)
Q Consensus 132 l~~ 134 (148)
+..
T Consensus 110 ~~~ 112 (129)
T PF13306_consen 110 IPS 112 (129)
T ss_dssp -TT
T ss_pred ECC
Confidence 543
No 75
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=92.17 E-value=0.097 Score=24.56 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=10.3
Q ss_pred CCcEEEccCccccccCCC
Q 041065 126 HLEVLHIQLNRLDGSWRM 143 (148)
Q Consensus 126 ~L~~L~l~~N~l~g~iP~ 143 (148)
+|+.|++++|+++ ++|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4556666666666 5654
No 76
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.06 E-value=0.069 Score=40.54 Aligned_cols=59 Identities=19% Similarity=0.121 Sum_probs=42.2
Q ss_pred CCCCCCcEEEcccCc-cccCCCccccCCCCCceeecCCCcccccCCcc---ccCCCCCcEEEccC
Q 041065 74 SSFPHLAYLDLTWNG-FFGTIPPQISNLSNLRYIYLGSNQFFGNIPAE---VGLLSHLEVLHIQL 134 (148)
Q Consensus 74 ~~l~~L~~L~ls~n~-l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~---~~~l~~L~~L~l~~ 134 (148)
..+++|.+|||+.+. ++...-..|.+++.|++|.++.+.. .+|.. +...++|.+|++.+
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 467888999998874 4433445677888899998888863 46654 46667888888754
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=87.86 E-value=0.47 Score=22.20 Aligned_cols=15 Identities=33% Similarity=0.623 Sum_probs=10.9
Q ss_pred CCCCcEEEccCcccc
Q 041065 124 LSHLEVLHIQLNRLD 138 (148)
Q Consensus 124 l~~L~~L~l~~N~l~ 138 (148)
+++|+.|+++.|+++
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777888888776
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=85.67 E-value=2.2 Score=27.14 Aligned_cols=79 Identities=18% Similarity=0.213 Sum_probs=44.1
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
.++.+.+.. .+. .++...|.+++.|+.+.+..+ +...-...|..+.+|+.+.+.. .+...-...|..+++|+.+++
T Consensus 13 ~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 13 NLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp T--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 577777764 444 454447888888999988775 5422234577777899998876 333122345666888888888
Q ss_pred cCc
Q 041065 133 QLN 135 (148)
Q Consensus 133 ~~N 135 (148)
..+
T Consensus 89 ~~~ 91 (129)
T PF13306_consen 89 PSN 91 (129)
T ss_dssp TTT
T ss_pred Ccc
Confidence 654
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.15 E-value=0.72 Score=21.75 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=8.0
Q ss_pred CCceeecCCCccc
Q 041065 102 NLRYIYLGSNQFF 114 (148)
Q Consensus 102 ~L~~L~ls~n~l~ 114 (148)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4666666666654
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.97 E-value=0.11 Score=36.99 Aligned_cols=81 Identities=12% Similarity=0.109 Sum_probs=44.6
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCC-Ccccc-CCCCCceeecCCC-cccccCCccccCCCCCcE
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTI-PPQIS-NLSNLRYIYLGSN-QFFGNIPAEVGLLSHLEV 129 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~-p~~~~-~l~~L~~L~ls~n-~l~g~~p~~~~~l~~L~~ 129 (148)
.|+.++-++..+...=-. .+..++.++.|.+.++.--+.. -..++ -.++|+.|++++| +++..--..+..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle-~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLE-HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHH-HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 467777777665432111 4566667777766666432111 11122 2367888888876 455333344566677776
Q ss_pred EEccC
Q 041065 130 LHIQL 134 (148)
Q Consensus 130 L~l~~ 134 (148)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 66543
No 81
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=80.66 E-value=0.1 Score=39.68 Aligned_cols=57 Identities=21% Similarity=0.192 Sum_probs=37.4
Q ss_pred CCcEEEcccCccccC-CCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccC
Q 041065 78 HLAYLDLTWNGFFGT-IPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQL 134 (148)
Q Consensus 78 ~L~~L~ls~n~l~g~-~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~ 134 (148)
.|+++||+...++-. +-.-+..+++|+.|.+.++++...|-..+.+-..|+.|+++.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence 477777777776522 122245567777777777777776666676667777777764
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=61.62 E-value=4.2 Score=33.40 Aligned_cols=61 Identities=23% Similarity=0.281 Sum_probs=29.2
Q ss_pred CCeEEEEcCCCCccce--ecCCCCCCCCCCcEEEcccC--ccccCCCccccCC--CCCceeecCCCcccc
Q 041065 52 GRVINISLPNRGVNGT--LHDFSFSSFPHLAYLDLTWN--GFFGTIPPQISNL--SNLRYIYLGSNQFFG 115 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~--~p~~~~~~l~~L~~L~ls~n--~l~g~~p~~~~~l--~~L~~L~ls~n~l~g 115 (148)
..|.++.|++|++... +.. --...|.|..|+|++| .+. .-.++.++ ..|++|-+.+|.+..
T Consensus 218 p~i~sl~lsnNrL~~Ld~~ss-lsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSS-LSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhhH-HHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCcccc
Confidence 3466666666665421 110 1123456666777776 222 11122221 236666666666653
No 83
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=54.76 E-value=8.2 Score=37.62 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=26.6
Q ss_pred EcCCCCccceecCCCCCCCCCCcEEEcccCccccC
Q 041065 58 SLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGT 92 (148)
Q Consensus 58 ~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~ 92 (148)
+|++|.|+. ++...|..+++|+.|+|++|.+...
T Consensus 1 DLSnN~Lst-Lp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKIST-IEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCc-cChHHhccCCCceEEEeeCCccccc
Confidence 578888884 4444788899999999999988643
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=51.74 E-value=11 Score=17.04 Aligned_cols=12 Identities=33% Similarity=0.368 Sum_probs=7.2
Q ss_pred CCCceeecCCCc
Q 041065 101 SNLRYIYLGSNQ 112 (148)
Q Consensus 101 ~~L~~L~ls~n~ 112 (148)
++|+.|+|+++.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666653
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=37.65 E-value=16 Score=30.17 Aligned_cols=64 Identities=23% Similarity=0.263 Sum_probs=40.8
Q ss_pred CCCCCCCcEEEcccCccccC--CCccccCCCCCceeecCCC--cccccCCccccCC--CCCcEEEccCcccc
Q 041065 73 FSSFPHLAYLDLTWNGFFGT--IPPQISNLSNLRYIYLGSN--QFFGNIPAEVGLL--SHLEVLHIQLNRLD 138 (148)
Q Consensus 73 ~~~l~~L~~L~ls~n~l~g~--~p~~~~~l~~L~~L~ls~n--~l~g~~p~~~~~l--~~L~~L~l~~N~l~ 138 (148)
-.+.+.+..+.|++|++... +..--...++|..|+|++| .+. --.++.++ ..|+.|-+.+|.+.
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccc
Confidence 34677888899999988522 1111224578999999999 333 11233333 34778888888764
No 86
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=34.19 E-value=17 Score=28.54 Aligned_cols=63 Identities=17% Similarity=0.075 Sum_probs=33.7
Q ss_pred CCCCCCcEEEcccCc-cccCCCcccc-CCCCCceeecCCCc-ccccC-CccccCCCCCcEEEccCcc
Q 041065 74 SSFPHLAYLDLTWNG-FFGTIPPQIS-NLSNLRYIYLGSNQ-FFGNI-PAEVGLLSHLEVLHIQLNR 136 (148)
Q Consensus 74 ~~l~~L~~L~ls~n~-l~g~~p~~~~-~l~~L~~L~ls~n~-l~g~~-p~~~~~l~~L~~L~l~~N~ 136 (148)
..++.|+.+++++.. ++...-..+. .+++|+.|.+.++. ++..- -.....+++|++|+++.+.
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 345667777777766 4322222222 26677777766555 33211 1122345667887777553
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=28.29 E-value=33 Score=33.89 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=9.1
Q ss_pred CCeEEEEcCCCCccc
Q 041065 52 GRVINISLPNRGVNG 66 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~ 66 (148)
.+++.|+|++|.+..
T Consensus 19 ~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 19 CNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCceEEEeeCCcccc
Confidence 456666666666553
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=21.70 E-value=6.1 Score=32.01 Aligned_cols=83 Identities=24% Similarity=0.286 Sum_probs=45.8
Q ss_pred eEEEEcCCCCccce----ecCCCCCCCCCCcEEEcccCccccCCCc----cccCC-CCCceeecCCCcccc----cCCcc
Q 041065 54 VINISLPNRGVNGT----LHDFSFSSFPHLAYLDLTWNGFFGTIPP----QISNL-SNLRYIYLGSNQFFG----NIPAE 120 (148)
Q Consensus 54 l~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~ls~n~l~g~~p~----~~~~l-~~L~~L~ls~n~l~g----~~p~~ 120 (148)
+..+.|.+|.+... +.. .+...++|..|++++|.+.+.--. .+... ..|++|++..+.+++ .+...
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~-~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQ-ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHH-HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 45566666665532 111 355667777778887777633111 11122 345666666666653 23444
Q ss_pred ccCCCCCcEEEccCccc
Q 041065 121 VGLLSHLEVLHIQLNRL 137 (148)
Q Consensus 121 ~~~l~~L~~L~l~~N~l 137 (148)
+.....++.++++.|.+
T Consensus 168 L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGL 184 (478)
T ss_pred HhcccchhHHHHHhccc
Confidence 55556667777776665
Done!