Query 041065
Match_columns 148
No_of_seqs 257 out of 1729
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 05:11:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041065.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041065hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 6.6E-26 2.3E-30 169.0 11.1 137 7-146 2-146 (313)
2 4eco_A Uncharacterized protein 99.9 5.7E-24 2E-28 171.8 11.2 139 7-147 26-271 (636)
3 3rgz_A Protein brassinosteroid 99.9 2.1E-23 7.2E-28 171.4 10.4 140 1-143 2-169 (768)
4 4ecn_A Leucine-rich repeat pro 99.9 1.5E-22 5.1E-27 168.4 9.5 134 7-147 265-513 (876)
5 4fcg_A Uncharacterized protein 99.8 5.4E-21 1.8E-25 143.4 4.7 138 5-146 21-171 (328)
6 3rgz_A Protein brassinosteroid 99.7 1.3E-17 4.4E-22 137.1 8.0 92 52-144 632-723 (768)
7 3e6j_A Variable lymphocyte rec 99.7 1.2E-16 4E-21 114.1 10.6 113 32-146 10-132 (229)
8 1w8a_A SLIT protein; signaling 99.7 1E-16 3.6E-21 111.5 9.9 94 53-146 30-123 (192)
9 2o6r_A Variable lymphocyte rec 99.6 2.7E-15 9.2E-20 102.7 10.6 102 41-144 7-118 (177)
10 3g39_A Variable lymphocyte rec 99.6 2.1E-15 7E-20 103.2 9.6 100 41-141 9-118 (170)
11 2v9t_B SLIT homolog 2 protein 99.6 3.6E-15 1.2E-19 105.8 10.6 86 53-139 57-142 (220)
12 2o6s_A Variable lymphocyte rec 99.6 4.2E-15 1.4E-19 104.1 10.6 97 41-138 7-113 (208)
13 1ogq_A PGIP-2, polygalacturona 99.6 4.2E-16 1.4E-20 115.9 5.1 95 52-147 76-171 (313)
14 2v70_A SLIT-2, SLIT homolog 2 99.6 4.2E-15 1.5E-19 105.4 10.1 94 52-146 57-150 (220)
15 2v70_A SLIT-2, SLIT homolog 2 99.6 4.9E-15 1.7E-19 105.1 10.1 94 53-146 33-126 (220)
16 1w8a_A SLIT protein; signaling 99.6 2.4E-15 8.3E-20 104.6 8.2 91 51-142 53-143 (192)
17 2wfh_A SLIT homolog 2 protein 99.6 9.2E-15 3.1E-19 101.9 9.9 89 52-143 31-119 (193)
18 2z81_A CD282 antigen, TOLL-lik 99.6 6.8E-15 2.3E-19 116.1 9.2 93 53-146 27-120 (549)
19 4fcg_A Uncharacterized protein 99.6 5.2E-15 1.8E-19 110.8 7.1 94 52-147 206-299 (328)
20 2v9t_B SLIT homolog 2 protein 99.6 2.9E-14 9.9E-19 101.1 10.2 105 41-146 11-125 (220)
21 2o6q_A Variable lymphocyte rec 99.6 2.2E-14 7.5E-19 104.3 9.7 86 53-139 38-123 (270)
22 3m19_A Variable lymphocyte rec 99.6 3.1E-14 1.1E-18 102.5 10.3 87 52-139 59-145 (251)
23 4g8a_A TOLL-like receptor 4; l 99.5 2.2E-14 7.7E-19 114.2 8.7 93 53-146 53-145 (635)
24 2r9u_A Variable lymphocyte rec 99.5 4.1E-14 1.4E-18 97.1 8.9 87 52-139 33-119 (174)
25 4b8c_D Glucose-repressible alc 99.5 1.2E-14 4E-19 119.2 4.8 90 53-147 225-314 (727)
26 2ifg_A High affinity nerve gro 99.5 8.9E-14 3E-18 104.3 9.0 96 41-138 8-116 (347)
27 3e6j_A Variable lymphocyte rec 99.5 1.5E-13 5.3E-18 97.9 9.8 92 52-145 64-155 (229)
28 2z80_A TOLL-like receptor 2, v 99.5 9.6E-14 3.3E-18 104.4 9.1 108 33-143 22-141 (353)
29 3m19_A Variable lymphocyte rec 99.5 2E-13 6.8E-18 98.3 10.0 93 52-145 83-175 (251)
30 2o6s_A Variable lymphocyte rec 99.5 2.4E-13 8.2E-18 95.1 9.8 86 52-138 52-137 (208)
31 2o6r_A Variable lymphocyte rec 99.5 1.2E-13 4.3E-18 94.4 8.0 91 51-142 51-141 (177)
32 2je0_A Acidic leucine-rich nuc 99.5 4.5E-14 1.5E-18 94.0 5.4 88 51-141 41-129 (149)
33 2xot_A Amphoterin-induced prot 99.5 2.7E-13 9.1E-18 102.6 9.9 89 54-143 41-130 (361)
34 3rfs_A Internalin B, repeat mo 99.5 3.4E-13 1.2E-17 98.2 10.1 85 54-139 111-195 (272)
35 3oja_B Anopheles plasmodium-re 99.5 4.1E-13 1.4E-17 107.6 11.1 94 53-147 76-169 (597)
36 2wfh_A SLIT homolog 2 protein 99.5 3E-13 1E-17 94.1 9.0 87 52-139 54-140 (193)
37 4g8a_A TOLL-like receptor 4; l 99.5 2.5E-13 8.6E-18 108.1 9.6 94 52-146 469-563 (635)
38 3g39_A Variable lymphocyte rec 99.5 5.4E-13 1.9E-17 91.0 9.9 89 54-146 11-99 (170)
39 3rfs_A Internalin B, repeat mo 99.5 4.9E-13 1.7E-17 97.4 10.0 94 52-146 85-178 (272)
40 3vq2_A TLR4, TOLL-like recepto 99.4 3.7E-13 1.3E-17 107.4 10.1 93 53-146 57-150 (606)
41 2ell_A Acidic leucine-rich nuc 99.4 1.2E-13 4.1E-18 93.6 6.2 87 52-143 49-137 (168)
42 2z66_A Variable lymphocyte rec 99.4 4.7E-13 1.6E-17 98.6 9.7 94 52-146 150-244 (306)
43 4b8c_D Glucose-repressible alc 99.4 2E-14 7E-19 117.8 2.0 90 52-145 247-336 (727)
44 2r9u_A Variable lymphocyte rec 99.4 7E-13 2.4E-17 90.9 9.3 85 55-144 15-99 (174)
45 3v47_A TOLL-like receptor 5B a 99.4 4.9E-13 1.7E-17 103.2 9.4 90 52-143 299-388 (455)
46 3vq2_A TLR4, TOLL-like recepto 99.4 4.4E-13 1.5E-17 106.9 9.5 93 52-145 80-173 (606)
47 1dce_A Protein (RAB geranylger 99.4 3.2E-13 1.1E-17 108.0 8.2 87 52-142 463-550 (567)
48 2id5_A Lingo-1, leucine rich r 99.4 8E-13 2.7E-17 102.8 10.2 92 53-145 33-124 (477)
49 1ozn_A Reticulon 4 receptor; N 99.4 9.4E-13 3.2E-17 96.2 9.9 89 52-141 56-145 (285)
50 1p9a_G Platelet glycoprotein I 99.4 9.9E-13 3.4E-17 96.8 10.0 91 53-145 101-191 (290)
51 3j0a_A TOLL-like receptor 5; m 99.4 3.6E-13 1.2E-17 111.8 8.4 90 53-142 49-140 (844)
52 2je0_A Acidic leucine-rich nuc 99.4 2E-13 6.8E-18 90.8 5.6 85 52-139 17-102 (149)
53 1ozn_A Reticulon 4 receptor; N 99.4 9.4E-13 3.2E-17 96.2 9.7 89 54-143 107-195 (285)
54 3v47_A TOLL-like receptor 5B a 99.4 7E-13 2.4E-17 102.3 9.4 90 52-142 323-412 (455)
55 2xot_A Amphoterin-induced prot 99.4 5.5E-13 1.9E-17 100.8 8.5 91 52-144 64-154 (361)
56 3zyi_A Leucine-rich repeat-con 99.4 9.3E-13 3.2E-17 102.1 9.7 90 52-143 75-164 (452)
57 1dce_A Protein (RAB geranylger 99.4 4.4E-13 1.5E-17 107.2 7.5 89 53-147 442-531 (567)
58 4eco_A Uncharacterized protein 99.4 9.7E-14 3.3E-18 112.1 3.7 90 52-143 206-322 (636)
59 2z62_A TOLL-like receptor 4, v 99.4 1.3E-12 4.3E-17 95.1 8.7 86 53-139 77-163 (276)
60 3t6q_A CD180 antigen; protein- 99.4 1E-12 3.5E-17 104.8 8.8 86 53-139 34-119 (606)
61 1p9a_G Platelet glycoprotein I 99.4 2.1E-12 7.3E-17 95.0 9.8 90 52-144 77-166 (290)
62 2z62_A TOLL-like receptor 4, v 99.4 1.8E-12 6.2E-17 94.2 9.3 94 52-146 52-146 (276)
63 2ft3_A Biglycan; proteoglycan, 99.4 2.3E-12 7.7E-17 96.1 9.6 94 41-138 33-136 (332)
64 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 9.7E-13 3.3E-17 104.5 7.9 91 52-146 52-143 (562)
65 2ell_A Acidic leucine-rich nuc 99.4 9.1E-13 3.1E-17 89.2 6.6 92 52-145 71-166 (168)
66 2ifg_A High affinity nerve gro 99.4 2.2E-12 7.5E-17 96.7 9.1 86 56-145 12-99 (347)
67 2o6q_A Variable lymphocyte rec 99.4 4E-12 1.4E-16 92.4 10.1 85 53-138 110-194 (270)
68 2z66_A Variable lymphocyte rec 99.4 1.8E-12 6.1E-17 95.5 8.1 87 52-139 126-213 (306)
69 2z7x_B TOLL-like receptor 1, v 99.4 4.3E-13 1.5E-17 105.3 5.0 84 52-139 45-129 (520)
70 4ezg_A Putative uncharacterize 99.4 1.8E-12 6.3E-17 90.1 7.5 86 52-139 88-173 (197)
71 1xku_A Decorin; proteoglycan, 99.4 2.3E-12 8E-17 95.9 8.5 92 52-145 192-283 (330)
72 2id5_A Lingo-1, leucine rich r 99.4 3.3E-12 1.1E-16 99.4 9.6 94 52-146 56-149 (477)
73 2z63_A TOLL-like receptor 4, v 99.4 2.2E-12 7.7E-17 101.9 8.7 89 53-142 446-535 (570)
74 1a9n_A U2A', U2A'; complex (nu 99.4 1.8E-12 6E-17 88.7 7.0 87 52-143 42-130 (176)
75 1wwl_A Monocyte differentiatio 99.3 3.4E-13 1.2E-17 100.0 3.6 87 52-140 95-188 (312)
76 2z63_A TOLL-like receptor 4, v 99.3 2.8E-12 9.5E-17 101.4 9.0 94 52-146 421-515 (570)
77 3o6n_A APL1; leucine-rich repe 99.3 5.1E-12 1.8E-16 96.0 10.1 92 53-146 70-162 (390)
78 2z7x_B TOLL-like receptor 1, v 99.3 1.5E-12 5E-17 102.3 7.2 94 51-145 323-419 (520)
79 3zyj_A Leucine-rich repeat-con 99.3 7.1E-12 2.4E-16 96.8 10.4 88 52-140 64-151 (440)
80 3oja_A Leucine-rich immune mol 99.3 2E-12 7E-17 101.5 7.3 101 43-146 111-234 (487)
81 2z81_A CD282 antigen, TOLL-lik 99.3 2.8E-12 9.6E-17 101.1 8.0 91 52-143 50-141 (549)
82 1xku_A Decorin; proteoglycan, 99.3 3.6E-12 1.2E-16 94.8 8.1 95 40-138 30-134 (330)
83 4ecn_A Leucine-rich repeat pro 99.3 2.8E-12 9.4E-17 107.0 8.2 90 53-146 729-826 (876)
84 2xwt_C Thyrotropin receptor; s 99.3 2.1E-12 7.1E-17 92.1 6.4 90 52-143 31-122 (239)
85 3t6q_A CD180 antigen; protein- 99.3 4E-12 1.4E-16 101.4 8.7 92 52-144 57-149 (606)
86 1ziw_A TOLL-like receptor 3; i 99.3 3.3E-12 1.1E-16 103.2 8.2 94 52-146 49-142 (680)
87 4ezg_A Putative uncharacterize 99.3 2.7E-12 9.4E-17 89.2 6.2 88 52-142 66-153 (197)
88 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 4.6E-12 1.6E-16 100.6 8.2 94 51-145 352-448 (562)
89 1ziw_A TOLL-like receptor 3; i 99.3 3.8E-12 1.3E-16 102.9 7.7 90 52-142 73-162 (680)
90 3j0a_A TOLL-like receptor 5; m 99.3 4.9E-12 1.7E-16 105.0 8.6 93 52-145 73-168 (844)
91 2ft3_A Biglycan; proteoglycan, 99.3 2.9E-12 1E-16 95.5 6.4 91 52-144 193-283 (332)
92 3o6n_A APL1; leucine-rich repe 99.3 1.6E-12 5.6E-17 98.8 5.1 92 52-145 45-136 (390)
93 3zyj_A Leucine-rich repeat-con 99.3 1.4E-11 4.7E-16 95.2 9.1 85 52-139 185-269 (440)
94 3zyi_A Leucine-rich repeat-con 99.3 1.5E-11 5E-16 95.4 9.2 85 52-139 196-280 (452)
95 3oja_B Anopheles plasmodium-re 99.3 1.7E-11 5.8E-16 98.2 9.4 87 52-139 99-185 (597)
96 1a9n_A U2A', U2A'; complex (nu 99.3 9.4E-12 3.2E-16 85.0 6.5 86 52-143 19-105 (176)
97 2z80_A TOLL-like receptor 2, v 99.3 1.6E-11 5.5E-16 92.2 8.2 93 52-146 76-171 (353)
98 3cvr_A Invasion plasmid antige 99.2 9.7E-12 3.3E-16 99.5 6.0 98 32-143 34-137 (571)
99 3oja_A Leucine-rich immune mol 99.2 2.3E-11 7.8E-16 95.5 7.9 89 52-145 169-258 (487)
100 4glp_A Monocyte differentiatio 99.2 1.4E-11 4.6E-16 91.2 6.2 86 53-139 92-183 (310)
101 1wwl_A Monocyte differentiatio 99.2 8.6E-12 3E-16 92.4 4.9 61 53-114 150-214 (312)
102 4glp_A Monocyte differentiatio 99.2 5.2E-12 1.8E-16 93.4 3.6 92 52-145 145-270 (310)
103 3o53_A Protein LRIM1, AGAP0063 99.2 3.3E-11 1.1E-15 89.5 7.2 89 53-146 145-234 (317)
104 3o53_A Protein LRIM1, AGAP0063 99.2 4.5E-11 1.5E-15 88.7 7.9 86 52-142 169-255 (317)
105 2xwt_C Thyrotropin receptor; s 99.2 3E-11 1E-15 86.0 6.1 81 52-135 55-140 (239)
106 4ay9_X Follicle-stimulating ho 99.2 4.7E-11 1.6E-15 89.8 6.9 101 41-143 9-121 (350)
107 1jl5_A Outer protein YOPM; leu 99.1 1E-10 3.4E-15 91.1 5.7 86 53-147 318-420 (454)
108 3cvr_A Invasion plasmid antige 99.1 9.6E-11 3.3E-15 93.8 4.6 85 52-146 160-251 (571)
109 4fmz_A Internalin; leucine ric 99.0 2.8E-10 9.6E-15 84.9 6.4 86 52-142 243-328 (347)
110 1h6t_A Internalin B; cell adhe 99.0 3.9E-10 1.3E-14 82.9 7.0 58 52-114 90-147 (291)
111 4fmz_A Internalin; leucine ric 99.0 1.6E-10 5.5E-15 86.2 4.9 83 51-138 264-346 (347)
112 1h6t_A Internalin B; cell adhe 99.0 6.9E-10 2.3E-14 81.6 8.0 79 53-138 113-191 (291)
113 1xeu_A Internalin C; cellular 99.0 6.4E-10 2.2E-14 80.7 7.1 80 52-139 85-164 (263)
114 1o6v_A Internalin A; bacterial 99.0 5.5E-10 1.9E-14 86.8 7.1 79 54-139 311-389 (466)
115 1h6u_A Internalin H; cell adhe 99.0 1E-09 3.4E-14 81.2 7.6 80 52-138 85-164 (308)
116 3bz5_A Internalin-J, INLJ; leu 99.0 1.6E-09 5.3E-14 84.5 8.9 78 52-139 64-141 (457)
117 1m9s_A Internalin B; cell inva 99.0 1E-09 3.4E-14 88.4 7.8 13 53-65 88-100 (605)
118 1jl5_A Outer protein YOPM; leu 99.0 2.2E-09 7.5E-14 83.6 9.3 81 53-143 132-212 (454)
119 1h6u_A Internalin H; cell adhe 99.0 1E-09 3.5E-14 81.2 6.9 79 53-138 108-186 (308)
120 3g06_A SSPH2 (leucine-rich rep 99.0 5E-10 1.7E-14 90.5 5.5 82 53-144 222-303 (622)
121 1xeu_A Internalin C; cellular 99.0 1.5E-09 5.2E-14 78.6 7.5 82 52-142 63-144 (263)
122 3bz5_A Internalin-J, INLJ; leu 99.0 3E-09 1E-13 82.9 9.5 78 53-140 171-248 (457)
123 1m9s_A Internalin B; cell inva 99.0 1.8E-09 6.2E-14 86.9 8.2 80 52-138 109-188 (605)
124 1o6v_A Internalin A; bacterial 99.0 1.3E-09 4.5E-14 84.6 7.2 83 53-142 288-370 (466)
125 3g06_A SSPH2 (leucine-rich rep 98.9 5E-10 1.7E-14 90.4 4.5 94 32-138 13-114 (622)
126 2ast_B S-phase kinase-associat 98.9 2.9E-10 1E-14 84.4 2.9 84 53-138 71-156 (336)
127 2ca6_A RAN GTPase-activating p 98.9 9.1E-11 3.1E-15 89.1 0.1 86 53-139 217-317 (386)
128 2ast_B S-phase kinase-associat 98.9 1.2E-10 4E-15 86.5 -0.1 87 52-139 93-183 (336)
129 1ds9_A Outer arm dynein; leuci 98.9 7.2E-12 2.5E-16 87.1 -6.7 65 76-143 92-158 (198)
130 3goz_A Leucine-rich repeat-con 98.9 1.3E-10 4.6E-15 87.6 -0.9 86 53-139 52-152 (362)
131 1ds9_A Outer arm dynein; leuci 98.9 1.8E-11 6.2E-16 85.1 -5.4 82 52-139 48-129 (198)
132 2ca6_A RAN GTPase-activating p 98.9 4.1E-10 1.4E-14 85.4 1.3 87 52-139 187-288 (386)
133 3rw6_A Nuclear RNA export fact 98.8 4.5E-09 1.5E-13 76.7 5.1 67 75-143 168-238 (267)
134 3goz_A Leucine-rich repeat-con 98.8 7.8E-10 2.7E-14 83.4 0.9 90 52-142 22-126 (362)
135 1z7x_W Ribonuclease inhibitor; 98.7 1.3E-09 4.4E-14 84.0 -1.2 87 53-140 314-413 (461)
136 3rw6_A Nuclear RNA export fact 98.7 1.2E-08 4E-13 74.5 3.5 77 52-131 170-257 (267)
137 4ay9_X Follicle-stimulating ho 98.6 1.1E-07 3.8E-12 71.3 6.8 65 51-115 53-118 (350)
138 1z7x_W Ribonuclease inhibitor; 98.5 1.3E-08 4.3E-13 78.5 0.3 86 53-139 86-184 (461)
139 3sb4_A Hypothetical leucine ri 98.4 7.3E-07 2.5E-11 66.2 7.9 88 52-143 226-314 (329)
140 3un9_A NLR family member X1; l 98.4 2.5E-08 8.7E-13 75.8 -0.2 64 75-138 181-252 (372)
141 3un9_A NLR family member X1; l 98.3 1.4E-07 4.6E-12 71.8 1.7 63 76-138 154-224 (372)
142 3ogk_B Coronatine-insensitive 98.1 1.3E-07 4.5E-12 75.0 -1.8 66 75-140 461-528 (592)
143 1io0_A Tropomodulin; LRR prote 98.1 4.7E-07 1.6E-11 62.2 1.0 86 52-138 65-164 (185)
144 1io0_A Tropomodulin; LRR prote 98.0 4.8E-07 1.7E-11 62.2 -0.5 88 51-139 35-137 (185)
145 3e4g_A ATP synthase subunit S, 98.0 1.3E-06 4.4E-11 59.8 1.5 84 52-136 61-150 (176)
146 3ogk_B Coronatine-insensitive 98.0 8.9E-07 3.1E-11 70.2 -0.2 34 99-133 218-251 (592)
147 2p1m_B Transport inhibitor res 97.9 6E-07 2E-11 71.1 -2.4 63 76-138 455-519 (594)
148 2p1m_B Transport inhibitor res 97.8 3.5E-06 1.2E-10 66.7 0.2 84 52-136 105-195 (594)
149 3rfe_A Platelet glycoprotein I 97.8 6.5E-05 2.2E-09 48.7 6.2 56 56-114 12-68 (130)
150 3sb4_A Hypothetical leucine ri 97.6 0.00012 4.3E-09 54.1 6.7 78 52-132 250-328 (329)
151 2ra8_A Uncharacterized protein 97.4 2.2E-05 7.6E-10 59.4 -0.1 63 76-138 251-320 (362)
152 3rfe_A Platelet glycoprotein I 97.2 0.00077 2.6E-08 43.6 6.0 35 102-136 32-66 (130)
153 4fdw_A Leucine rich hypothetic 97.0 0.0036 1.2E-07 47.8 8.4 83 53-138 272-358 (401)
154 2ra8_A Uncharacterized protein 96.9 0.00018 6.2E-09 54.4 0.5 41 99-139 250-293 (362)
155 3e4g_A ATP synthase subunit S, 96.8 0.00057 1.9E-08 46.6 2.3 62 77-138 61-128 (176)
156 4fdw_A Leucine rich hypothetic 96.4 0.009 3.1E-07 45.6 7.1 79 53-135 158-236 (401)
157 1pgv_A TMD-1, tropomodulin TMD 96.2 0.0012 4.2E-08 45.8 0.8 60 75-134 68-135 (197)
158 1pgv_A TMD-1, tropomodulin TMD 95.2 0.0081 2.8E-07 41.6 1.9 66 73-138 37-111 (197)
159 4fs7_A Uncharacterized protein 95.1 0.066 2.2E-06 40.3 7.0 79 53-135 298-376 (394)
160 4gt6_A Cell surface protein; l 95.1 0.12 4.1E-06 38.9 8.4 66 68-136 302-368 (394)
161 4h09_A Hypothetical leucine ri 94.2 0.12 4.2E-06 38.4 6.4 61 72-134 281-342 (379)
162 4gt6_A Cell surface protein; l 92.8 0.24 8.1E-06 37.2 6.0 80 53-138 312-391 (394)
163 4h09_A Hypothetical leucine ri 92.6 0.5 1.7E-05 35.0 7.6 80 53-135 241-320 (379)
164 4fs7_A Uncharacterized protein 90.6 0.76 2.6E-05 34.4 6.7 62 72-135 292-353 (394)
165 2lz0_A Uncharacterized protein 41.5 53 0.0018 19.4 4.5 40 71-111 14-53 (100)
166 3ox7_P MH027; urokinase-type p 32.3 14 0.00048 15.5 0.5 9 39-47 6-14 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=6.6e-26 Score=168.99 Aligned_cols=137 Identities=26% Similarity=0.411 Sum_probs=113.7
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCcCCCcCCCCCcc--ccceeeCCC---CCeEEEEcCCCCccc--eecCCCCCCCCCC
Q 041065 7 SESNEEADALLKWKASLKNHNRSLLSSCINDATNVS--SKTSPCNDA---GRVINISLPNRGVNG--TLHDFSFSSFPHL 79 (148)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~c~--~~gv~c~~~---~~l~~L~l~~n~l~~--~~p~~~~~~l~~L 79 (148)
.|.++|++||++||+++.++. .+.+|..+.++|. |.||+|... ++|+.|+++++.+.+ .+|. .+..+++|
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~--~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L 78 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT--TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-SLANLPYL 78 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG--GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG-GGGGCTTC
T ss_pred CCCHHHHHHHHHHHHhcCCcc--cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh-hHhCCCCC
Confidence 578899999999999997643 4789987778998 999999854 689999999999998 7886 78888888
Q ss_pred cEEEccc-CccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCccccccCCCCCc
Q 041065 80 AYLDLTW-NGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTC 146 (148)
Q Consensus 80 ~~L~ls~-n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~ 146 (148)
++|++++ |.+.+.+|..+.++++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..++
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 8888884 888888888888888888888888888777777777777888888887777777776554
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=5.7e-24 Score=171.76 Aligned_cols=139 Identities=19% Similarity=0.189 Sum_probs=122.9
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCc-------CCCcCCCCCccc---cceeeCCCCCeEEEEcCCCCccceecCCCCCCC
Q 041065 7 SESNEEADALLKWKASLKNHNRSLL-------SSCINDATNVSS---KTSPCNDAGRVINISLPNRGVNGTLHDFSFSSF 76 (148)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~~~~-------~~W~~~~~~c~~---~gv~c~~~~~l~~L~l~~n~l~~~~p~~~~~~l 76 (148)
+....|+.||.+++.++.++.|... ++|..+.++|.| .||+|+..++|+.|+|+++++.|.+|. .+..+
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~-~l~~L 104 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD-AIGQL 104 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECG-GGGGC
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCCh-HHhcC
Confidence 3344799999999999887655422 379888889999 999998778999999999999999997 99999
Q ss_pred CCCcEEEcccCc--------------------------------------------------------------------
Q 041065 77 PHLAYLDLTWNG-------------------------------------------------------------------- 88 (148)
Q Consensus 77 ~~L~~L~ls~n~-------------------------------------------------------------------- 88 (148)
++|++|+|++|.
T Consensus 105 ~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~ 184 (636)
T 4eco_A 105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184 (636)
T ss_dssp TTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCC
T ss_pred ccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchh
Confidence 999999999884
Q ss_pred ----------cccCCCccccCCCCCceeecCCCccccc-----------------CCcccc--CCCCCcEEEccCccccc
Q 041065 89 ----------FFGTIPPQISNLSNLRYIYLGSNQFFGN-----------------IPAEVG--LLSHLEVLHIQLNRLDG 139 (148)
Q Consensus 89 ----------l~g~~p~~~~~l~~L~~L~ls~n~l~g~-----------------~p~~~~--~l~~L~~L~l~~N~l~g 139 (148)
++| +|..++++++|++|+|++|+++|. +|..++ ++++|++|++++|++.|
T Consensus 185 ~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~ 263 (636)
T 4eco_A 185 DTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263 (636)
T ss_dssp TTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS
T ss_pred hhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc
Confidence 445 888899999999999999999986 999999 99999999999999999
Q ss_pred cCCCCCcC
Q 041065 140 SWRMCTCT 147 (148)
Q Consensus 140 ~iP~~~~~ 147 (148)
.+|+.+++
T Consensus 264 ~~p~~l~~ 271 (636)
T 4eco_A 264 KLPTFLKA 271 (636)
T ss_dssp SCCTTTTT
T ss_pred cChHHHhc
Confidence 99998875
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=2.1e-23 Score=171.45 Aligned_cols=140 Identities=23% Similarity=0.318 Sum_probs=106.6
Q ss_pred CeeeccCCCHHHHHHHHHHHHhccCCCCCCcCCCcCCCCCccccceeeCCCCCeEEEEcCCCCccce---ecC-------
Q 041065 1 FLITISSESNEEADALLKWKASLKNHNRSLLSSCINDATNVSSKTSPCNDAGRVINISLPNRGVNGT---LHD------- 70 (148)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~c~~~gv~c~~~~~l~~L~l~~n~l~~~---~p~------- 70 (148)
|+.+++.+.++|++||++||+++.++. .+.+|..+.+||.|.||+|+ .++|+.|+|+++.+.|. ++.
T Consensus 2 ~~~~~~~~~~~~~~all~~k~~~~~~~--~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~ 78 (768)
T 3rgz_A 2 FQASPSQSLYREIHQLISFKDVLPDKN--LLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTG 78 (768)
T ss_dssp ------CCHHHHHHHHHHHHTTCSCTT--SSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTT
T ss_pred CcCccccCCHHHHHHHHHHHhhCCCcc--cccCCCCCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCc
Confidence 455667778899999999999998654 58999877889999999998 78999999999998886 442
Q ss_pred ---------------CCCCCCCCCcEEEcccCccccCCCc--cccCCCCCceeecCCCcccccCCccc-cCCCCCcEEEc
Q 041065 71 ---------------FSFSSFPHLAYLDLTWNGFFGTIPP--QISNLSNLRYIYLGSNQFFGNIPAEV-GLLSHLEVLHI 132 (148)
Q Consensus 71 ---------------~~~~~l~~L~~L~ls~n~l~g~~p~--~~~~l~~L~~L~ls~n~l~g~~p~~~-~~l~~L~~L~l 132 (148)
..+..+++|++|+|++|.++|.+|. .++++++|++|++++|.+++.+|..+ .++++|++|++
T Consensus 79 L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 158 (768)
T 3rgz_A 79 LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158 (768)
T ss_dssp CCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred ccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEEC
Confidence 1566777777777777777777776 77777777777777777777777655 67777777777
Q ss_pred cCccccccCCC
Q 041065 133 QLNRLDGSWRM 143 (148)
Q Consensus 133 ~~N~l~g~iP~ 143 (148)
++|++++.+|.
T Consensus 159 s~n~l~~~~~~ 169 (768)
T 3rgz_A 159 SANSISGANVV 169 (768)
T ss_dssp CSSCCEEETHH
T ss_pred CCCccCCcCCh
Confidence 77777766553
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=1.5e-22 Score=168.41 Aligned_cols=134 Identities=19% Similarity=0.192 Sum_probs=116.6
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCcCCCcCCC-----CC--ccc------------cceeeCCCCCeEEEEcCCCCccce
Q 041065 7 SESNEEADALLKWKASLKNHNRSLLSSCINDA-----TN--VSS------------KTSPCNDAGRVINISLPNRGVNGT 67 (148)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~-----~~--c~~------------~gv~c~~~~~l~~L~l~~n~l~~~ 67 (148)
+...+|+.||++||+++.++ +|..+. ++ |.| .||.|+..++|+.|+|+++++.|.
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ 338 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGR 338 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEE
T ss_pred ccchHHHHHHHHHHHHcCCC------CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCc
Confidence 44558999999999999764 564432 45 999 999998778999999999999999
Q ss_pred ecCCCCCCCCCCcEEEc-ccCccccC------------------------------------------------------
Q 041065 68 LHDFSFSSFPHLAYLDL-TWNGFFGT------------------------------------------------------ 92 (148)
Q Consensus 68 ~p~~~~~~l~~L~~L~l-s~n~l~g~------------------------------------------------------ 92 (148)
+|. .+..+++|++|+| ++|.++|.
T Consensus 339 ip~-~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i 417 (876)
T 4ecn_A 339 VPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI 417 (876)
T ss_dssp ECG-GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCC
T ss_pred Cch-HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccc
Confidence 997 9999999999999 77766554
Q ss_pred ----------------------CCccccCCCCCceeecCCCcccc-----------------cCCcccc--CCCCCcEEE
Q 041065 93 ----------------------IPPQISNLSNLRYIYLGSNQFFG-----------------NIPAEVG--LLSHLEVLH 131 (148)
Q Consensus 93 ----------------------~p~~~~~l~~L~~L~ls~n~l~g-----------------~~p~~~~--~l~~L~~L~ 131 (148)
+|..++++++|++|+|++|+++| .+|..++ ++++|++|+
T Consensus 418 ~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~ 497 (876)
T 4ecn_A 418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497 (876)
T ss_dssp CCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred ccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence 78889999999999999999998 4999988 999999999
Q ss_pred ccCccccccCCCCCcC
Q 041065 132 IQLNRLDGSWRMCTCT 147 (148)
Q Consensus 132 l~~N~l~g~iP~~~~~ 147 (148)
|++|++.|.+|..+++
T Consensus 498 Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 498 LYNCPNMTQLPDFLYD 513 (876)
T ss_dssp EESCTTCCSCCGGGGG
T ss_pred CcCCCCCccChHHHhC
Confidence 9999999999987764
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=5.4e-21 Score=143.38 Aligned_cols=138 Identities=15% Similarity=0.197 Sum_probs=117.0
Q ss_pred ccCCCHHHHHHHHHHHHhccCCCCCCcCCC----cCCCCCccccceeeC---------CCCCeEEEEcCCCCccceecCC
Q 041065 5 ISSESNEEADALLKWKASLKNHNRSLLSSC----INDATNVSSKTSPCN---------DAGRVINISLPNRGVNGTLHDF 71 (148)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~W----~~~~~~c~~~gv~c~---------~~~~l~~L~l~~n~l~~~~p~~ 71 (148)
.+....+++++|++||..+..++..+...| ....++|.|.|+.|. ...+++.|++++|.+. .+|.
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~- 98 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD- 98 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS-
T ss_pred ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh-
Confidence 455667899999999998854444556778 346678999999985 2368999999999998 6776
Q ss_pred CCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCccccccCCCCCc
Q 041065 72 SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTC 146 (148)
Q Consensus 72 ~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~ 146 (148)
.+..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..++.+++|++|++++|++.+.+|..++
T Consensus 99 ~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 171 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLA 171 (328)
T ss_dssp CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSE
T ss_pred hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHh
Confidence 7888999999999999998 89999999999999999999999 8899999999999999999999999998764
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.71 E-value=1.3e-17 Score=137.14 Aligned_cols=92 Identities=26% Similarity=0.447 Sum_probs=88.8
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
..++.|++++|.++|.+|. .+..++.|+.|+|++|.++|.+|..++++++|++|||++|+++|.+|..+..+++|++|+
T Consensus 632 ~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp BCCCEEECCSSCCBSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred ccccEEECcCCcccccCCH-HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 4688999999999999997 899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccccCCCC
Q 041065 132 IQLNRLDGSWRMC 144 (148)
Q Consensus 132 l~~N~l~g~iP~~ 144 (148)
+++|+++|.||..
T Consensus 711 ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 711 LSNNNLSGPIPEM 723 (768)
T ss_dssp CCSSEEEEECCSS
T ss_pred CcCCcccccCCCc
Confidence 9999999999974
No 7
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=1.2e-16 Score=114.12 Aligned_cols=113 Identities=21% Similarity=0.161 Sum_probs=82.8
Q ss_pred CCCcCCCCCccccceeeCCC----------CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCC
Q 041065 32 SSCINDATNVSSKTSPCNDA----------GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLS 101 (148)
Q Consensus 32 ~~W~~~~~~c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~ 101 (148)
..|......|.|.++.|... ..++.|++++|.+.+..+. .+..+++|++|+|++|.++...+..|..++
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 88 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPG-VFDSLINLKELYLGSNQLGALPVGVFDSLT 88 (229)
T ss_dssp -CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHH-HhhCccCCcEEECCCCCCCCcChhhcccCC
Confidence 34555667899999999742 3588899999998876665 777888888888888888644444567788
Q ss_pred CCceeecCCCcccccCCccccCCCCCcEEEccCccccccCCCCCc
Q 041065 102 NLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTC 146 (148)
Q Consensus 102 ~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~ 146 (148)
+|++|+|++|++++..+..+..+++|++|++++|+++ .+|..+.
T Consensus 89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 132 (229)
T 3e6j_A 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE 132 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG
T ss_pred CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccc
Confidence 8888888888887544455677777777777777777 6766543
No 8
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=1e-16 Score=111.51 Aligned_cols=94 Identities=20% Similarity=0.211 Sum_probs=67.3
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
.++.|++++|.+.+..+...+..+++|++|++++|.+++..|..|..+++|++|+|++|++++..|..|..+++|++|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 56777777777765444213667777777777777777666777777777777777777777666666777777777777
Q ss_pred cCccccccCCCCCc
Q 041065 133 QLNRLDGSWRMCTC 146 (148)
Q Consensus 133 ~~N~l~g~iP~~~~ 146 (148)
++|++++.+|..+.
T Consensus 110 ~~N~l~~~~~~~~~ 123 (192)
T 1w8a_A 110 YDNQISCVMPGSFE 123 (192)
T ss_dssp CSSCCCEECTTSST
T ss_pred CCCcCCeeCHHHhh
Confidence 77777776666554
No 9
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=2.7e-15 Score=102.75 Aligned_cols=102 Identities=21% Similarity=0.264 Sum_probs=76.6
Q ss_pred ccccceeeCCC----------CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCC
Q 041065 41 VSSKTSPCNDA----------GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGS 110 (148)
Q Consensus 41 c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~ 110 (148)
|.|.++.|... ..++.|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHG-VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp EETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHH-HhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 56777777532 3678888888888754443 577888888888888888855555578888888888888
Q ss_pred CcccccCCccccCCCCCcEEEccCccccccCCCC
Q 041065 111 NQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMC 144 (148)
Q Consensus 111 n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~ 144 (148)
|++++..+..+..+++|++|++++|+++ .+|..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~ 118 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDG 118 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTT
T ss_pred CCccccCHHHhhCCcccCEEECcCCcce-EeCHH
Confidence 8888655556778888888888888888 45543
No 10
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.62 E-value=2.1e-15 Score=103.15 Aligned_cols=100 Identities=19% Similarity=0.167 Sum_probs=83.8
Q ss_pred ccccceeeCCC----------CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCC
Q 041065 41 VSSKTSPCNDA----------GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGS 110 (148)
Q Consensus 41 c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~ 110 (148)
|.|..+.|... ..++.|+|++|.+++..+. .|..+++|++|+|++|.+++..+..|..+++|++|+|++
T Consensus 9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPG-VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChh-hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 45666666421 4689999999999987776 899999999999999999966666678999999999999
Q ss_pred CcccccCCccccCCCCCcEEEccCccccccC
Q 041065 111 NQFFGNIPAEVGLLSHLEVLHIQLNRLDGSW 141 (148)
Q Consensus 111 n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~i 141 (148)
|++++..+..|..+++|++|+|++|+++...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 9999655567999999999999999988543
No 11
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=3.6e-15 Score=105.83 Aligned_cols=86 Identities=21% Similarity=0.209 Sum_probs=41.3
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
+++.|+|++|.+.+..|. .|..+++|++|+|++|.++...+..|..+++|++|+|++|++++..|..|..+++|++|+|
T Consensus 57 ~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 135 (220)
T 2v9t_B 57 KLRRIDLSNNQISELAPD-AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSL 135 (220)
T ss_dssp TCCEEECCSSCCCEECTT-TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcCHH-HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEEC
Confidence 344444444444433333 4444555555555555554222222344555555555555555444445555555555555
Q ss_pred cCccccc
Q 041065 133 QLNRLDG 139 (148)
Q Consensus 133 ~~N~l~g 139 (148)
++|++++
T Consensus 136 ~~N~l~~ 142 (220)
T 2v9t_B 136 YDNKLQT 142 (220)
T ss_dssp CSSCCSC
T ss_pred CCCcCCE
Confidence 5555553
No 12
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=4.2e-15 Score=104.14 Aligned_cols=97 Identities=21% Similarity=0.273 Sum_probs=54.3
Q ss_pred ccccceeeCCC----------CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCC
Q 041065 41 VSSKTSPCNDA----------GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGS 110 (148)
Q Consensus 41 c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~ 110 (148)
|.|.++.|... .+++.|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 7 C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNG-VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChh-hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 55666666422 2466677777766643332 455666666666666666543333445566666666666
Q ss_pred CcccccCCccccCCCCCcEEEccCcccc
Q 041065 111 NQFFGNIPAEVGLLSHLEVLHIQLNRLD 138 (148)
Q Consensus 111 n~l~g~~p~~~~~l~~L~~L~l~~N~l~ 138 (148)
|++++..+..+..+++|++|++++|+++
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 113 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQ 113 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCc
Confidence 6665333334455555566655555555
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.61 E-value=4.2e-16 Score=115.92 Aligned_cols=95 Identities=19% Similarity=0.310 Sum_probs=80.3
Q ss_pred CCeEEEEcCC-CCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065 52 GRVINISLPN-RGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL 130 (148)
Q Consensus 52 ~~l~~L~l~~-n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L 130 (148)
.+++.|++++ |.+.+.+|. .+..+++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..+..+++|++|
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp TTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 4688889985 888888886 78888888888888888888888888888888888888888888888888888888888
Q ss_pred EccCccccccCCCCCcC
Q 041065 131 HIQLNRLDGSWRMCTCT 147 (148)
Q Consensus 131 ~l~~N~l~g~iP~~~~~ 147 (148)
++++|+++|.+|..++.
T Consensus 155 ~L~~N~l~~~~p~~l~~ 171 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGS 171 (313)
T ss_dssp ECCSSCCEEECCGGGGC
T ss_pred ECcCCcccCcCCHHHhh
Confidence 88888888888876653
No 14
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=4.2e-15 Score=105.45 Aligned_cols=94 Identities=16% Similarity=0.083 Sum_probs=71.1
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.+++..+. .|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..+..+++|++|+
T Consensus 57 ~~L~~L~L~~N~i~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 135 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEG-AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135 (220)
T ss_dssp TTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred CCCCEEECCCCcCCEECHH-HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence 4577777777777755554 677788888888888888766666677888888888888888877677788888888888
Q ss_pred ccCccccccCCCCCc
Q 041065 132 IQLNRLDGSWRMCTC 146 (148)
Q Consensus 132 l~~N~l~g~iP~~~~ 146 (148)
|++|++++..|..+.
T Consensus 136 L~~N~l~~~~~~~~~ 150 (220)
T 2v70_A 136 LYDNQITTVAPGAFD 150 (220)
T ss_dssp CTTSCCCCBCTTTTT
T ss_pred CCCCcCCEECHHHhc
Confidence 888888866676654
No 15
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=4.9e-15 Score=105.12 Aligned_cols=94 Identities=17% Similarity=0.100 Sum_probs=61.4
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
.++.|++++|.+++..+...+..+++|++|++++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+|
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 35667777777765544324566777777777777776555556677777777777777776555555667777777777
Q ss_pred cCccccccCCCCCc
Q 041065 133 QLNRLDGSWRMCTC 146 (148)
Q Consensus 133 ~~N~l~g~iP~~~~ 146 (148)
++|++++..|..+.
T Consensus 113 s~N~l~~~~~~~~~ 126 (220)
T 2v70_A 113 RSNRITCVGNDSFI 126 (220)
T ss_dssp TTSCCCCBCTTSST
T ss_pred CCCcCCeECHhHcC
Confidence 77777755555543
No 16
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=2.4e-15 Score=104.58 Aligned_cols=91 Identities=19% Similarity=0.240 Sum_probs=84.3
Q ss_pred CCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065 51 AGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL 130 (148)
Q Consensus 51 ~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L 130 (148)
..+++.|++++|.+++..|. .|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..+..+++|++|
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPN-AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred CCCCCEEECCCCCCCCcCHh-HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 36799999999999987786 89999999999999999998888889999999999999999999989999999999999
Q ss_pred EccCccccccCC
Q 041065 131 HIQLNRLDGSWR 142 (148)
Q Consensus 131 ~l~~N~l~g~iP 142 (148)
++++|.+++..+
T Consensus 132 ~L~~N~l~c~c~ 143 (192)
T 1w8a_A 132 NLASNPFNCNCH 143 (192)
T ss_dssp ECTTCCBCCSGG
T ss_pred EeCCCCccCcCc
Confidence 999999987654
No 17
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=9.2e-15 Score=101.86 Aligned_cols=89 Identities=20% Similarity=0.235 Sum_probs=75.1
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
..++.|++++|.++ .+|. .+..+++|++|++++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+
T Consensus 31 ~~l~~L~L~~n~i~-~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSCCC-SCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCc-hhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 36888999999887 5665 788899999999999999877777788999999999999999876677888899999999
Q ss_pred ccCccccccCCC
Q 041065 132 IQLNRLDGSWRM 143 (148)
Q Consensus 132 l~~N~l~g~iP~ 143 (148)
|++|+++ .+|.
T Consensus 109 L~~N~l~-~~~~ 119 (193)
T 2wfh_A 109 LHGNDIS-VVPE 119 (193)
T ss_dssp CCSSCCC-BCCT
T ss_pred CCCCCCC-eeCh
Confidence 9999988 5554
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.57 E-value=6.8e-15 Score=116.08 Aligned_cols=93 Identities=16% Similarity=0.080 Sum_probs=73.5
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
++++|++++|.+++..|. .+..+++|++|++++|.+++..|..|..+++|++|++++|++++..|..++.+++|++|++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 688888888888876665 7888888888888888888777777888888888888888888666666888888888888
Q ss_pred cCccccc-cCCCCCc
Q 041065 133 QLNRLDG-SWRMCTC 146 (148)
Q Consensus 133 ~~N~l~g-~iP~~~~ 146 (148)
++|++++ .+|..++
T Consensus 106 s~n~l~~~~~~~~~~ 120 (549)
T 2z81_A 106 MGNPYQTLGVTSLFP 120 (549)
T ss_dssp TTCCCSSSCSSCSCT
T ss_pred CCCcccccchhhhhh
Confidence 8888875 4555443
No 19
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.56 E-value=5.2e-15 Score=110.77 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=77.9
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.+.+ +|. .+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..++.+++|++|+
T Consensus 206 ~~L~~L~L~~N~l~~-l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 283 (328)
T 4fcg_A 206 QNLKSLKIRNSPLSA-LGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283 (328)
T ss_dssp TTCCEEEEESSCCCC-CCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred CCCCEEEccCCCCCc-Cch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence 467788888888774 554 677888888888888888888888888888888888888888888888888888888888
Q ss_pred ccCccccccCCCCCcC
Q 041065 132 IQLNRLDGSWRMCTCT 147 (148)
Q Consensus 132 l~~N~l~g~iP~~~~~ 147 (148)
+++|++.|.+|+.+++
T Consensus 284 L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 284 LRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp CTTCTTCCCCCGGGGG
T ss_pred CCCCCchhhccHHHhh
Confidence 8888888888887764
No 20
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.55 E-value=2.9e-14 Score=101.12 Aligned_cols=105 Identities=18% Similarity=0.198 Sum_probs=86.4
Q ss_pred ccccceeeCCC----------CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCC
Q 041065 41 VSSKTSPCNDA----------GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGS 110 (148)
Q Consensus 41 c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~ 110 (148)
|.|..+.|... ..++.|++++|.+.+..+. .|..+++|++|+|++|.+++..|..|..+++|++|+|++
T Consensus 11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~-~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPG-AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp EETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred ECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHh-HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 55777777532 3689999999999865554 788999999999999999988888999999999999999
Q ss_pred CcccccCCccccCCCCCcEEEccCccccccCCCCCc
Q 041065 111 NQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTC 146 (148)
Q Consensus 111 n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~ 146 (148)
|++++..+..|..+++|++|+|++|++++..|..+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~ 125 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ 125 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcC
Confidence 999944344578899999999999999977676654
No 21
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.55 E-value=2.2e-14 Score=104.35 Aligned_cols=86 Identities=17% Similarity=0.199 Sum_probs=49.6
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
.++.|++++|.+....+. .+..+++|++|++++|.++...+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 38 ~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSK-AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TCSEEECCSSCCSCCCTT-SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCEEECcCCCCCeeCHH-HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 466777777776644333 5666666666666666666333333455666666666666665433334455555555555
Q ss_pred cCccccc
Q 041065 133 QLNRLDG 139 (148)
Q Consensus 133 ~~N~l~g 139 (148)
++|++++
T Consensus 117 ~~n~l~~ 123 (270)
T 2o6q_A 117 DRNQLKS 123 (270)
T ss_dssp CSSCCCC
T ss_pred CCCccCe
Confidence 5555553
No 22
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=3.1e-14 Score=102.51 Aligned_cols=87 Identities=21% Similarity=0.263 Sum_probs=50.8
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 59 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAG-VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp TTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccCCEEECCCCcCCccCHh-HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence 3455566666655544443 455666666666666666544444555666666666666666643334456666666666
Q ss_pred ccCccccc
Q 041065 132 IQLNRLDG 139 (148)
Q Consensus 132 l~~N~l~g 139 (148)
+++|++++
T Consensus 138 Ls~N~l~~ 145 (251)
T 3m19_A 138 LNTNQLQS 145 (251)
T ss_dssp CCSSCCCC
T ss_pred CcCCcCCc
Confidence 66666663
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.53 E-value=2.2e-14 Score=114.15 Aligned_cols=93 Identities=23% Similarity=0.125 Sum_probs=75.3
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
.+++|+|++|.+++..+. .|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~-~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHH-HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 689999999999865554 7899999999999999998666667888999999999999998655567888888999999
Q ss_pred cCccccccCCCCCc
Q 041065 133 QLNRLDGSWRMCTC 146 (148)
Q Consensus 133 ~~N~l~g~iP~~~~ 146 (148)
++|++++..|..|+
T Consensus 132 s~N~l~~l~~~~~~ 145 (635)
T 4g8a_A 132 VETNLASLENFPIG 145 (635)
T ss_dssp TTSCCCCSTTCCCT
T ss_pred CCCcCCCCChhhhh
Confidence 88888844333444
No 24
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=4.1e-14 Score=97.09 Aligned_cols=87 Identities=16% Similarity=0.101 Sum_probs=75.1
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
..++.|+|++|.+.+..|. .|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPG-VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHH-HhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 4688999999999977776 899999999999999999965455578999999999999999954444589999999999
Q ss_pred ccCccccc
Q 041065 132 IQLNRLDG 139 (148)
Q Consensus 132 l~~N~l~g 139 (148)
|++|++..
T Consensus 112 L~~N~~~c 119 (174)
T 2r9u_A 112 LYNNPWDC 119 (174)
T ss_dssp CCSSCBCT
T ss_pred eCCCCccc
Confidence 99999873
No 25
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=1.2e-14 Score=119.21 Aligned_cols=90 Identities=24% Similarity=0.290 Sum_probs=65.5
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
.++.|+|++|.+. .+|. .+..+++|++|+|++|.++ .+|..|..+++|++|+|++|+|+ .+|..|+.+++|++|+|
T Consensus 225 ~L~~L~Ls~n~l~-~l~~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 225 LWHALDLSNLQIF-NISA-NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCEEECTTSCCS-CCCG-GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred CCcEEECCCCCCC-CCCh-hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence 4667777777776 4554 5567777777777777777 67777777777777777777777 67777777777777777
Q ss_pred cCccccccCCCCCcC
Q 041065 133 QLNRLDGSWRMCTCT 147 (148)
Q Consensus 133 ~~N~l~g~iP~~~~~ 147 (148)
++|.|+ .||..|++
T Consensus 301 ~~N~l~-~lp~~~~~ 314 (727)
T 4b8c_D 301 FDNMVT-TLPWEFGN 314 (727)
T ss_dssp CSSCCC-CCCSSTTS
T ss_pred CCCCCC-ccChhhhc
Confidence 777776 77766654
No 26
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.49 E-value=8.9e-14 Score=104.26 Aligned_cols=96 Identities=18% Similarity=0.131 Sum_probs=71.1
Q ss_pred ccccceeeCCC------------CCeEEEEcCC-CCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceee
Q 041065 41 VSSKTSPCNDA------------GRVINISLPN-RGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIY 107 (148)
Q Consensus 41 c~~~gv~c~~~------------~~l~~L~l~~-n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 107 (148)
|.|..+.|... .+++.|+|++ |.+.+..+. .|..+++|+.|+|++|.+++..|..|.++++|++|+
T Consensus 8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChh-HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 56666666532 2478888886 888765554 788888888888888888887777788888888888
Q ss_pred cCCCcccccCCccccCCCCCcEEEccCcccc
Q 041065 108 LGSNQFFGNIPAEVGLLSHLEVLHIQLNRLD 138 (148)
Q Consensus 108 ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~ 138 (148)
|++|+|++..+..+..+. |+.|+|.+|+|.
T Consensus 87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 888888843334444444 888888888776
No 27
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.49 E-value=1.5e-13 Score=97.86 Aligned_cols=92 Identities=20% Similarity=0.243 Sum_probs=74.5
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|+|++|.+....+. .+..+++|++|+|++|.+++..+..+..+++|++|+|++|+++ .+|..+..+++|++|+
T Consensus 64 ~~L~~L~L~~N~l~~i~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 141 (229)
T 3e6j_A 64 INLKELYLGSNQLGALPVG-VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA 141 (229)
T ss_dssp TTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEE
T ss_pred cCCcEEECCCCCCCCcChh-hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEE
Confidence 5789999999998644333 6788999999999999998665666788999999999999998 7888888899999999
Q ss_pred ccCccccccCCCCC
Q 041065 132 IQLNRLDGSWRMCT 145 (148)
Q Consensus 132 l~~N~l~g~iP~~~ 145 (148)
|++|++++..+..+
T Consensus 142 L~~N~l~~~~~~~~ 155 (229)
T 3e6j_A 142 LDQNQLKSIPHGAF 155 (229)
T ss_dssp CCSSCCCCCCTTTT
T ss_pred CCCCcCCccCHHHH
Confidence 99999884333333
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.49 E-value=9.6e-14 Score=104.37 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=82.9
Q ss_pred CCcCCCCCccccceeeCCC------------CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCC
Q 041065 33 SCINDATNVSSKTSPCNDA------------GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNL 100 (148)
Q Consensus 33 ~W~~~~~~c~~~gv~c~~~------------~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l 100 (148)
.|......|.|.++ |+.. .++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+.++
T Consensus 22 ~~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (353)
T 2z80_A 22 SSNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNS-DLQRCVNLQALVLTSNGINTIEEDSFSSL 99 (353)
T ss_dssp -----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred CCCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHH-HhccCCCCCEEECCCCccCccCHhhcCCC
Confidence 34444456778776 5421 3689999999999865544 78899999999999999987777789999
Q ss_pred CCCceeecCCCcccccCCccccCCCCCcEEEccCccccccCCC
Q 041065 101 SNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRM 143 (148)
Q Consensus 101 ~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 143 (148)
++|++|++++|++++..+..++.+++|++|++++|+++ .+|.
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~ 141 (353)
T 2z80_A 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGE 141 (353)
T ss_dssp TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCS
T ss_pred CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCc
Confidence 99999999999998433344888999999999999988 6665
No 29
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.49 E-value=2e-13 Score=98.29 Aligned_cols=93 Identities=18% Similarity=0.172 Sum_probs=66.9
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|+|++|++++..+..+..+++|++|+
T Consensus 83 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 83 TELGTLGLANNQLASLPLG-VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161 (251)
T ss_dssp TTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCEEECCCCcccccChh-HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE
Confidence 4677888888887754444 677788888888888888755555567788888888888888755455677788888888
Q ss_pred ccCccccccCCCCC
Q 041065 132 IQLNRLDGSWRMCT 145 (148)
Q Consensus 132 l~~N~l~g~iP~~~ 145 (148)
+++|++++..|..+
T Consensus 162 L~~N~l~~~~~~~~ 175 (251)
T 3m19_A 162 LSTNQLQSVPHGAF 175 (251)
T ss_dssp CCSSCCSCCCTTTT
T ss_pred CCCCcCCccCHHHH
Confidence 88888875444344
No 30
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=2.4e-13 Score=95.14 Aligned_cols=86 Identities=20% Similarity=0.261 Sum_probs=48.4
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 52 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 130 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSLPNG-VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130 (208)
T ss_dssp TTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccCcEEECCCCccCccChh-hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEE
Confidence 3566666666666533222 455566666666666666543333455566666666666666543333455566666666
Q ss_pred ccCcccc
Q 041065 132 IQLNRLD 138 (148)
Q Consensus 132 l~~N~l~ 138 (148)
+++|+++
T Consensus 131 l~~N~l~ 137 (208)
T 2o6s_A 131 LYQNQLK 137 (208)
T ss_dssp CCSSCCS
T ss_pred CCCCccc
Confidence 6666665
No 31
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.48 E-value=1.2e-13 Score=94.38 Aligned_cols=91 Identities=19% Similarity=0.199 Sum_probs=78.1
Q ss_pred CCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065 51 AGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL 130 (148)
Q Consensus 51 ~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L 130 (148)
..+++.|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 51 l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 129 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDG-VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cccccEEECCCCcceEeChh-HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEE
Confidence 35799999999999865444 68899999999999999997666678899999999999999995444456889999999
Q ss_pred EccCccccccCC
Q 041065 131 HIQLNRLDGSWR 142 (148)
Q Consensus 131 ~l~~N~l~g~iP 142 (148)
++++|++++..|
T Consensus 130 ~l~~N~~~~~~~ 141 (177)
T 2o6r_A 130 WLHTNPWDCSCP 141 (177)
T ss_dssp ECCSSCBCCCHH
T ss_pred EecCCCeeccCc
Confidence 999999987654
No 32
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.47 E-value=4.5e-14 Score=93.99 Aligned_cols=88 Identities=17% Similarity=0.134 Sum_probs=77.0
Q ss_pred CCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCccccc-CCccccCCCCCcE
Q 041065 51 AGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGN-IPAEVGLLSHLEV 129 (148)
Q Consensus 51 ~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~-~p~~~~~l~~L~~ 129 (148)
..+++.|++++|.+.+. . .+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++
T Consensus 41 l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI--A-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp CTTCCEEECTTSCCCCC--T-TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred cCCCcEEECcCCCCCCc--h-hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence 46799999999999865 3 789999999999999999987888888899999999999999862 3478999999999
Q ss_pred EEccCccccccC
Q 041065 130 LHIQLNRLDGSW 141 (148)
Q Consensus 130 L~l~~N~l~g~i 141 (148)
|++++|++++..
T Consensus 118 L~l~~N~l~~~~ 129 (149)
T 2je0_A 118 LDLFNCEVTNLN 129 (149)
T ss_dssp EECTTCGGGGST
T ss_pred EeCcCCcccchH
Confidence 999999998543
No 33
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.47 E-value=2.7e-13 Score=102.56 Aligned_cols=89 Identities=21% Similarity=0.127 Sum_probs=46.9
Q ss_pred eEEEEcCCCCccceecCCCCC-CCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 54 VINISLPNRGVNGTLHDFSFS-SFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 54 l~~L~l~~n~l~~~~p~~~~~-~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
++.|+|++|.+++..+. .+. .+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus 41 l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp CSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 55666666666543332 344 5555555555555555444444555555555555555555433344555555555555
Q ss_pred cCccccccCCC
Q 041065 133 QLNRLDGSWRM 143 (148)
Q Consensus 133 ~~N~l~g~iP~ 143 (148)
++|++++..|.
T Consensus 120 ~~N~i~~~~~~ 130 (361)
T 2xot_A 120 YNNHIVVVDRN 130 (361)
T ss_dssp CSSCCCEECTT
T ss_pred CCCcccEECHH
Confidence 55555533333
No 34
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.46 E-value=3.4e-13 Score=98.17 Aligned_cols=85 Identities=21% Similarity=0.266 Sum_probs=37.9
Q ss_pred eEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEcc
Q 041065 54 VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQ 133 (148)
Q Consensus 54 l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~ 133 (148)
++.|++++|.+.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..++.+++|++|+++
T Consensus 111 L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDG-VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp CCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCccCHH-HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence 44444444444432222 34444444444444444443333334444445555555554443333334444555555555
Q ss_pred Cccccc
Q 041065 134 LNRLDG 139 (148)
Q Consensus 134 ~N~l~g 139 (148)
+|++++
T Consensus 190 ~N~l~~ 195 (272)
T 3rfs_A 190 QNQLKS 195 (272)
T ss_dssp SSCCSC
T ss_pred CCcCCc
Confidence 555543
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.46 E-value=4.1e-13 Score=107.60 Aligned_cols=94 Identities=15% Similarity=0.060 Sum_probs=74.0
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
+++.|++++|.+.+..+. .|..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..+..|+.+++|++|++
T Consensus 76 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEECCCCCCCCCChH-HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 567788888888766665 7888888999999999888777777888888999999988888433344688888899999
Q ss_pred cCccccccCCCCCcC
Q 041065 133 QLNRLDGSWRMCTCT 147 (148)
Q Consensus 133 ~~N~l~g~iP~~~~~ 147 (148)
++|.+++..|..++.
T Consensus 155 s~N~l~~~~~~~~~~ 169 (597)
T 3oja_B 155 SNNNLERIEDDTFQA 169 (597)
T ss_dssp CSSCCCBCCTTTTTT
T ss_pred eCCcCCCCChhhhhc
Confidence 888888777766653
No 36
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.46 E-value=3e-13 Score=94.12 Aligned_cols=87 Identities=26% Similarity=0.254 Sum_probs=77.8
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.+++..+. .|..+++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|+.|+
T Consensus 54 ~~L~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 54 KHLTLIDLSNNRISTLSNQ-SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp TTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCEeCHh-HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 5799999999999976665 799999999999999999987778899999999999999999955455788999999999
Q ss_pred ccCccccc
Q 041065 132 IQLNRLDG 139 (148)
Q Consensus 132 l~~N~l~g 139 (148)
+++|.+..
T Consensus 133 L~~N~~~C 140 (193)
T 2wfh_A 133 IGANPLYC 140 (193)
T ss_dssp CCSSCEEC
T ss_pred eCCCCeec
Confidence 99998863
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.46 E-value=2.5e-13 Score=108.09 Aligned_cols=94 Identities=22% Similarity=0.291 Sum_probs=77.3
Q ss_pred CCeEEEEcCCCCccc-eecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065 52 GRVINISLPNRGVNG-TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL 130 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~-~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L 130 (148)
..++.|++++|.+.. ..|. .+..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..+..+++|++|
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~-~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 547 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 547 (635)
T ss_dssp TTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEE
T ss_pred hhhhhhhhhhcccccccCch-hhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEE
Confidence 467888888887543 4554 78888899999999999988888888889999999999999987777788888999999
Q ss_pred EccCccccccCCCCCc
Q 041065 131 HIQLNRLDGSWRMCTC 146 (148)
Q Consensus 131 ~l~~N~l~g~iP~~~~ 146 (148)
++++|++++..|..+.
T Consensus 548 ~Ls~N~l~~~~~~~l~ 563 (635)
T 4g8a_A 548 DYSLNHIMTSKKQELQ 563 (635)
T ss_dssp ECTTSCCCBCCSSCTT
T ss_pred ECCCCcCCCCCHHHHH
Confidence 9999999877776654
No 38
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=5.4e-13 Score=91.01 Aligned_cols=89 Identities=17% Similarity=0.079 Sum_probs=75.2
Q ss_pred eEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEcc
Q 041065 54 VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQ 133 (148)
Q Consensus 54 l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~ 133 (148)
.+.+++++|.++. +|. .+ .+.|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 11 ~~~l~~s~n~l~~-ip~-~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPT-GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSS-CCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc-cCc-cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4689999999984 665 44 3889999999999998888889999999999999999996555667899999999999
Q ss_pred CccccccCCCCCc
Q 041065 134 LNRLDGSWRMCTC 146 (148)
Q Consensus 134 ~N~l~g~iP~~~~ 146 (148)
+|+|++..|..+.
T Consensus 87 ~N~l~~~~~~~~~ 99 (170)
T 3g39_A 87 DNQLKSIPRGAFD 99 (170)
T ss_dssp SSCCCCCCTTTTT
T ss_pred CCccCEeCHHHhc
Confidence 9999954444444
No 39
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.45 E-value=4.9e-13 Score=97.35 Aligned_cols=94 Identities=19% Similarity=0.171 Sum_probs=71.2
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|+
T Consensus 85 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 85 TNLTYLILTGNQLQSLPNG-VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163 (272)
T ss_dssp TTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccCccChh-HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEE
Confidence 4678888888887755543 577888888888888888866666678888888888888888865555677888888888
Q ss_pred ccCccccccCCCCCc
Q 041065 132 IQLNRLDGSWRMCTC 146 (148)
Q Consensus 132 l~~N~l~g~iP~~~~ 146 (148)
+++|++++..|..++
T Consensus 164 l~~n~l~~~~~~~~~ 178 (272)
T 3rfs_A 164 LSYNQLQSLPEGVFD 178 (272)
T ss_dssp CCSSCCCCCCTTTTT
T ss_pred CCCCCcCccCHHHhc
Confidence 888888855444333
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.45 E-value=3.7e-13 Score=107.37 Aligned_cols=93 Identities=17% Similarity=0.170 Sum_probs=52.6
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
+++.|++++|.+++..|. .|..+++|++|++++|.+++..|..|.++++|++|++++|.+++..|..++++++|++|++
T Consensus 57 ~L~~L~Ls~n~l~~i~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 57 ELQWLDLSRCEIETIEDK-AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred cCcEEeCCCCcccccCHH-HhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 455555555555544443 4555566666666666665555555566666666666666665444455566666666666
Q ss_pred cCccccc-cCCCCCc
Q 041065 133 QLNRLDG-SWRMCTC 146 (148)
Q Consensus 133 ~~N~l~g-~iP~~~~ 146 (148)
++|++++ .+|..++
T Consensus 136 ~~n~l~~~~lp~~~~ 150 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFS 150 (606)
T ss_dssp CSSCCCCCCCCGGGG
T ss_pred CCCcccceechHhHh
Confidence 6666653 4555544
No 41
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=1.2e-13 Score=93.64 Aligned_cols=87 Identities=23% Similarity=0.285 Sum_probs=74.9
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCC--ccccCCCCCcE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIP--AEVGLLSHLEV 129 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p--~~~~~l~~L~~ 129 (148)
.+++.|++++|.+.+. . .+..+++|++|++++|.+++.+|..+..+++|++|++++|++++ +| ..+..+++|++
T Consensus 49 ~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~ 124 (168)
T 2ell_A 49 VNLEFLSLINVGLISV--S-NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKS 124 (168)
T ss_dssp GGCCEEEEESSCCCCC--S-SCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCE
T ss_pred CCCCEEeCcCCCCCCh--h-hhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCE
Confidence 5789999999998865 3 78899999999999999997788878789999999999999985 44 68889999999
Q ss_pred EEccCccccccCCC
Q 041065 130 LHIQLNRLDGSWRM 143 (148)
Q Consensus 130 L~l~~N~l~g~iP~ 143 (148)
|++++|++++ +|.
T Consensus 125 L~l~~N~l~~-~~~ 137 (168)
T 2ell_A 125 LDLFNCEVTN-LND 137 (168)
T ss_dssp EECCSSGGGT-STT
T ss_pred EEeeCCcCcc-hHH
Confidence 9999999984 443
No 42
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.45 E-value=4.7e-13 Score=98.63 Aligned_cols=94 Identities=22% Similarity=0.291 Sum_probs=69.8
Q ss_pred CCeEEEEcCCCCccc-eecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065 52 GRVINISLPNRGVNG-TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL 130 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~-~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L 130 (148)
.+++.|++++|.+.+ .+|. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp TTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred cCCCEEECCCCccccccchh-HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence 467777777777765 4554 67777888888888888876667777778888888888888876555567777888888
Q ss_pred EccCccccccCCCCCc
Q 041065 131 HIQLNRLDGSWRMCTC 146 (148)
Q Consensus 131 ~l~~N~l~g~iP~~~~ 146 (148)
++++|++++.+|..+.
T Consensus 229 ~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 229 DYSLNHIMTSKKQELQ 244 (306)
T ss_dssp ECTTSCCCBCSSSSCC
T ss_pred ECCCCCCcccCHHHHH
Confidence 8888888777766554
No 43
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.44 E-value=2e-14 Score=117.79 Aligned_cols=90 Identities=22% Similarity=0.383 Sum_probs=83.8
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|+|++|.++ .+|. .+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..|+.+++|++|+
T Consensus 247 ~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 247 DFLTRLYLNGNSLT-ELPA-EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG 322 (727)
T ss_dssp CSCSCCBCTTSCCS-CCCG-GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE
T ss_pred CCCCEEEeeCCcCc-ccCh-hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe
Confidence 57899999999999 7886 8999999999999999999 88999999999999999999998 8999999999999999
Q ss_pred ccCccccccCCCCC
Q 041065 132 IQLNRLDGSWRMCT 145 (148)
Q Consensus 132 l~~N~l~g~iP~~~ 145 (148)
|++|+|+|.+|..+
T Consensus 323 L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 323 VEGNPLEKQFLKIL 336 (727)
T ss_dssp CTTSCCCSHHHHHH
T ss_pred CCCCccCCCChHHH
Confidence 99999998887654
No 44
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=7e-13 Score=90.87 Aligned_cols=85 Identities=20% Similarity=0.177 Sum_probs=72.5
Q ss_pred EEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccC
Q 041065 55 INISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQL 134 (148)
Q Consensus 55 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~ 134 (148)
+.+++++|++. .+|. .+. ++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~-~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPA-GIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCS-CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCC-CcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 57899999986 5775 443 8999999999999988888999999999999999999964445578999999999999
Q ss_pred ccccccCCCC
Q 041065 135 NRLDGSWRMC 144 (148)
Q Consensus 135 N~l~g~iP~~ 144 (148)
|+|+ .+|+.
T Consensus 91 N~l~-~l~~~ 99 (174)
T 2r9u_A 91 NHLK-SIPRG 99 (174)
T ss_dssp SCCC-CCCTT
T ss_pred Cccc-eeCHH
Confidence 9999 55553
No 45
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.43 E-value=4.9e-13 Score=103.24 Aligned_cols=90 Identities=20% Similarity=0.167 Sum_probs=67.7
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|+
T Consensus 299 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 377 (455)
T 3v47_A 299 TDLEQLTLAQNEINKIDDN-AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377 (455)
T ss_dssp TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcccccChh-HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEE
Confidence 4677777777777766565 677778888888888887766677777788888888888888776677777788888888
Q ss_pred ccCccccccCCC
Q 041065 132 IQLNRLDGSWRM 143 (148)
Q Consensus 132 l~~N~l~g~iP~ 143 (148)
+++|++++ +|+
T Consensus 378 L~~N~l~~-~~~ 388 (455)
T 3v47_A 378 LDTNQLKS-VPD 388 (455)
T ss_dssp CCSSCCSC-CCT
T ss_pred CCCCcccc-CCH
Confidence 88888774 443
No 46
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.43 E-value=4.4e-13 Score=106.92 Aligned_cols=93 Identities=17% Similarity=0.143 Sum_probs=54.2
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccc-cCCccccCCCCCcEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFG-NIPAEVGLLSHLEVL 130 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g-~~p~~~~~l~~L~~L 130 (148)
.+++.|++++|.+.+..|. .+.++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|
T Consensus 80 ~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L 158 (606)
T 3vq2_A 80 HHLSNLILTGNPIQSFSPG-SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158 (606)
T ss_dssp TTCCEEECTTCCCCCCCTT-SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEE
T ss_pred hhcCEeECCCCcccccChh-hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEE
Confidence 3556666666666554454 56666666666666666654444556666666666666666653 456666666666666
Q ss_pred EccCccccccCCCCC
Q 041065 131 HIQLNRLDGSWRMCT 145 (148)
Q Consensus 131 ~l~~N~l~g~iP~~~ 145 (148)
++++|++++..|..+
T Consensus 159 ~Ls~n~l~~~~~~~~ 173 (606)
T 3vq2_A 159 DLSYNYIQTITVNDL 173 (606)
T ss_dssp ECCSSCCCEECTTTT
T ss_pred EccCCcceecChhhh
Confidence 666666665444433
No 47
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=3.2e-13 Score=107.96 Aligned_cols=87 Identities=18% Similarity=0.189 Sum_probs=78.0
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccC-CccccCCCCCcEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNI-PAEVGLLSHLEVL 130 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~-p~~~~~l~~L~~L 130 (148)
.+++.|+|++|.++ .+|. .+..+++|+.|+|++|.+++ +| .++.+++|++|+|++|++++.. |..++.+++|+.|
T Consensus 463 ~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 463 LLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp TTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred ccCcEeecCccccc-ccch-hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 57899999999998 7786 89999999999999999986 67 8999999999999999999766 8999999999999
Q ss_pred EccCccccccCC
Q 041065 131 HIQLNRLDGSWR 142 (148)
Q Consensus 131 ~l~~N~l~g~iP 142 (148)
+|++|++++..|
T Consensus 539 ~L~~N~l~~~~~ 550 (567)
T 1dce_A 539 NLQGNSLCQEEG 550 (567)
T ss_dssp ECTTSGGGGSSS
T ss_pred EecCCcCCCCcc
Confidence 999999996554
No 48
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.42 E-value=8e-13 Score=102.83 Aligned_cols=92 Identities=28% Similarity=0.227 Sum_probs=57.0
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
.++.|++++|.+++..+. .|..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 33 ~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQD-EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCCccceECHh-HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 466677777776655444 5666666666666666666555666666666666666666666333334566666666666
Q ss_pred cCccccccCCCCC
Q 041065 133 QLNRLDGSWRMCT 145 (148)
Q Consensus 133 ~~N~l~g~iP~~~ 145 (148)
++|++++..|..+
T Consensus 112 s~n~i~~~~~~~~ 124 (477)
T 2id5_A 112 SENKIVILLDYMF 124 (477)
T ss_dssp TTSCCCEECTTTT
T ss_pred CCCccccCChhHc
Confidence 6666665545443
No 49
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.42 E-value=9.4e-13 Score=96.16 Aligned_cols=89 Identities=20% Similarity=0.141 Sum_probs=59.4
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCc-cccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNG-FFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL 130 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~-l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L 130 (148)
.+++.|++++|.+.+..+. .+..+++|++|++++|. +....|..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 56 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134 (285)
T ss_dssp TTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccceeCHh-hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence 4566677777666655454 66677777777777775 554445666677777777777777776556666777777777
Q ss_pred EccCccccccC
Q 041065 131 HIQLNRLDGSW 141 (148)
Q Consensus 131 ~l~~N~l~g~i 141 (148)
++++|++++..
T Consensus 135 ~l~~n~l~~~~ 145 (285)
T 1ozn_A 135 YLQDNALQALP 145 (285)
T ss_dssp ECCSSCCCCCC
T ss_pred ECCCCcccccC
Confidence 77777776433
No 50
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.42 E-value=9.9e-13 Score=96.83 Aligned_cols=91 Identities=15% Similarity=0.096 Sum_probs=51.0
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
+++.|++++|.+++..+. .|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 101 ~L~~L~l~~N~l~~l~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 101 ALTVLDVSFNRLTSLPLG-ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp TCCEEECCSSCCCCCCSS-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCcccCHH-HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEEC
Confidence 455555555555543333 4556666666666666665444444555666666666666666322233455666666666
Q ss_pred cCccccccCCCCC
Q 041065 133 QLNRLDGSWRMCT 145 (148)
Q Consensus 133 ~~N~l~g~iP~~~ 145 (148)
++|+++ .+|..+
T Consensus 180 ~~N~l~-~ip~~~ 191 (290)
T 1p9a_G 180 QENSLY-TIPKGF 191 (290)
T ss_dssp CSSCCC-CCCTTT
T ss_pred CCCcCC-ccChhh
Confidence 666666 555544
No 51
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.42 E-value=3.6e-13 Score=111.76 Aligned_cols=90 Identities=18% Similarity=0.179 Sum_probs=54.3
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCcc--ccCCCCCcEE
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAE--VGLLSHLEVL 130 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~--~~~l~~L~~L 130 (148)
+++.|++++|...+.++...|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++.+|.. ++.+++|++|
T Consensus 49 ~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L 128 (844)
T 3j0a_A 49 QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128 (844)
T ss_dssp SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEE
T ss_pred cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEE
Confidence 45555555554444442225666666666666666666556666666666666666666666555543 6666666666
Q ss_pred EccCccccccCC
Q 041065 131 HIQLNRLDGSWR 142 (148)
Q Consensus 131 ~l~~N~l~g~iP 142 (148)
++++|++++..|
T Consensus 129 ~Ls~N~l~~~~~ 140 (844)
T 3j0a_A 129 DLSKNQIRSLYL 140 (844)
T ss_dssp EEESCCCCCCCC
T ss_pred ECCCCccccccc
Confidence 666666665433
No 52
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.42 E-value=2e-13 Score=90.82 Aligned_cols=85 Identities=21% Similarity=0.322 Sum_probs=75.3
Q ss_pred CCeEEEEcCCCCcc-ceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065 52 GRVINISLPNRGVN-GTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL 130 (148)
Q Consensus 52 ~~l~~L~l~~n~l~-~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L 130 (148)
.+++.|++++|.+. +.+|. .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 46889999999998 77886 788999999999999999865 678899999999999999997788888889999999
Q ss_pred EccCccccc
Q 041065 131 HIQLNRLDG 139 (148)
Q Consensus 131 ~l~~N~l~g 139 (148)
++++|++++
T Consensus 94 ~ls~N~i~~ 102 (149)
T 2je0_A 94 NLSGNKIKD 102 (149)
T ss_dssp ECTTSCCCS
T ss_pred ECCCCcCCC
Confidence 999999985
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.42 E-value=9.4e-13 Score=96.15 Aligned_cols=89 Identities=20% Similarity=0.214 Sum_probs=35.8
Q ss_pred eEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEcc
Q 041065 54 VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQ 133 (148)
Q Consensus 54 l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~ 133 (148)
++.|++++|.+.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 107 L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp CCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCEECHh-HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence 34444444444332222 33444444444444444443222334444444444444444442222234444444444444
Q ss_pred CccccccCCC
Q 041065 134 LNRLDGSWRM 143 (148)
Q Consensus 134 ~N~l~g~iP~ 143 (148)
+|++++..|.
T Consensus 186 ~n~l~~~~~~ 195 (285)
T 1ozn_A 186 QNRVAHVHPH 195 (285)
T ss_dssp SSCCCEECTT
T ss_pred CCcccccCHh
Confidence 4444433333
No 54
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.42 E-value=7e-13 Score=102.34 Aligned_cols=90 Identities=20% Similarity=0.235 Sum_probs=54.5
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 323 ~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 401 (455)
T 3v47_A 323 THLLKLNLSQNFLGSIDSR-MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW 401 (455)
T ss_dssp TTCCEEECCSSCCCEECGG-GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ccCCEEECCCCccCCcChh-HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEE
Confidence 3566666666666544443 556666666666666666655566666666666666666666643333455666666666
Q ss_pred ccCccccccCC
Q 041065 132 IQLNRLDGSWR 142 (148)
Q Consensus 132 l~~N~l~g~iP 142 (148)
+++|++++.+|
T Consensus 402 l~~N~l~~~~~ 412 (455)
T 3v47_A 402 LHTNPWDCSCP 412 (455)
T ss_dssp CCSSCBCCCTT
T ss_pred ccCCCcccCCC
Confidence 66666666555
No 55
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.41 E-value=5.5e-13 Score=100.83 Aligned_cols=91 Identities=20% Similarity=0.240 Sum_probs=64.4
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|+|++|.+++..+. .|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..|..+++|+.|+
T Consensus 64 ~~L~~L~L~~N~i~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 142 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFISSE-AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142 (361)
T ss_dssp TTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred cccCEEECCCCcCCccChh-hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence 4677777777777755444 677777777777777777755555677777777777777777766666777777777777
Q ss_pred ccCccccccCCCC
Q 041065 132 IQLNRLDGSWRMC 144 (148)
Q Consensus 132 l~~N~l~g~iP~~ 144 (148)
|++|+++ .+|..
T Consensus 143 L~~N~l~-~l~~~ 154 (361)
T 2xot_A 143 LSQNQIS-RFPVE 154 (361)
T ss_dssp CCSSCCC-SCCGG
T ss_pred CCCCcCC-eeCHH
Confidence 7777777 45543
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.41 E-value=9.3e-13 Score=102.13 Aligned_cols=90 Identities=20% Similarity=0.175 Sum_probs=79.2
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|+|++|.+++..+. .|..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..+..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHH-HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 3689999999999977676 899999999999999999988888899999999999999999965556688999999999
Q ss_pred ccCccccccCCC
Q 041065 132 IQLNRLDGSWRM 143 (148)
Q Consensus 132 l~~N~l~g~iP~ 143 (148)
|++|+++ .+|.
T Consensus 154 L~~N~l~-~~~~ 164 (452)
T 3zyi_A 154 LRNNPIE-SIPS 164 (452)
T ss_dssp CCSCCCC-EECT
T ss_pred CCCCCcc-eeCH
Confidence 9999998 4544
No 57
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=4.4e-13 Score=107.17 Aligned_cols=89 Identities=22% Similarity=0.271 Sum_probs=81.0
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
.++.|++++|.+++ +| .+..+++|+.|+|++|.++ .+|..++.+++|++|+|++|++++ +| .++.+++|+.|+|
T Consensus 442 ~L~~L~Ls~n~l~~-lp--~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSS-CC--CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCC-Cc--CccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 57899999999986 66 4899999999999999999 899999999999999999999996 78 8999999999999
Q ss_pred cCccccccC-CCCCcC
Q 041065 133 QLNRLDGSW-RMCTCT 147 (148)
Q Consensus 133 ~~N~l~g~i-P~~~~~ 147 (148)
++|++++.+ |..++.
T Consensus 516 s~N~l~~~~~p~~l~~ 531 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVS 531 (567)
T ss_dssp CSSCCCSSSTTGGGGG
T ss_pred CCCCCCCCCCcHHHhc
Confidence 999999776 877654
No 58
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.40 E-value=9.7e-14 Score=112.08 Aligned_cols=90 Identities=12% Similarity=0.265 Sum_probs=65.7
Q ss_pred CCeEEEEcCCCCccce-----------------ecCCCCC--CCCCCcEEEcccCccccCCCccccCCCCCceeecCCCc
Q 041065 52 GRVINISLPNRGVNGT-----------------LHDFSFS--SFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQ 112 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~-----------------~p~~~~~--~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~ 112 (148)
.++++|++++|.+++. +|. .+. .+++|++|++++|.+.|.+|..++++++|++|++++|+
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 5678888888888874 776 777 78888888888888888888888888888888888887
Q ss_pred -ccc-cCCccccCC------CCCcEEEccCccccccCCC
Q 041065 113 -FFG-NIPAEVGLL------SHLEVLHIQLNRLDGSWRM 143 (148)
Q Consensus 113 -l~g-~~p~~~~~l------~~L~~L~l~~N~l~g~iP~ 143 (148)
++| .+|..++.+ ++|++|++++|+++ .||.
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~ 322 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV 322 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCc
Confidence 777 666655554 55666666666555 5555
No 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.39 E-value=1.3e-12 Score=95.06 Aligned_cols=86 Identities=17% Similarity=0.236 Sum_probs=46.3
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccc-cCCccccCCCCCcEEE
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFG-NIPAEVGLLSHLEVLH 131 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g-~~p~~~~~l~~L~~L~ 131 (148)
+++.|++++|.+.+..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|..+..+++|++|+
T Consensus 77 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 77 HLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp TCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred CCCEEECCCCccCccChh-hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence 455555555555443333 45555555555555555554434345555556666666665553 2455555566666666
Q ss_pred ccCccccc
Q 041065 132 IQLNRLDG 139 (148)
Q Consensus 132 l~~N~l~g 139 (148)
+++|++++
T Consensus 156 Ls~N~l~~ 163 (276)
T 2z62_A 156 LSSNKIQS 163 (276)
T ss_dssp CCSSCCCE
T ss_pred CCCCCCCc
Confidence 66665553
No 60
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.39 E-value=1e-12 Score=104.84 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=57.0
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
.++.|++++|.+++..|. .|..+++|++|++++|.+.+..|..|.++++|++|++++|++++..|..++.+++|++|++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TCCEEECTTCCCSEECTT-TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred cCcEEEccCCccCcCChh-HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 466777777777655554 6666777777777777666666666666666777777766666655666666666666666
Q ss_pred cCccccc
Q 041065 133 QLNRLDG 139 (148)
Q Consensus 133 ~~N~l~g 139 (148)
++|++++
T Consensus 113 ~~n~i~~ 119 (606)
T 3t6q_A 113 IQTGISS 119 (606)
T ss_dssp TTSCCSC
T ss_pred cccCccc
Confidence 6666664
No 61
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.39 E-value=2.1e-12 Score=95.04 Aligned_cols=90 Identities=20% Similarity=0.231 Sum_probs=69.1
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.+. .+|. .+..+++|++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|+.|+
T Consensus 77 ~~L~~L~Ls~N~l~-~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp TTCCEEECCSSCCS-SCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCEEECCCCcCC-cCch-hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence 45777777777776 4565 677888888888888888866666788888888888888888855555677888888888
Q ss_pred ccCccccccCCCC
Q 041065 132 IQLNRLDGSWRMC 144 (148)
Q Consensus 132 l~~N~l~g~iP~~ 144 (148)
+++|+++ .+|..
T Consensus 155 L~~N~l~-~l~~~ 166 (290)
T 1p9a_G 155 LANNNLT-ELPAG 166 (290)
T ss_dssp CTTSCCS-CCCTT
T ss_pred CCCCcCC-ccCHH
Confidence 8888888 56654
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.38 E-value=1.8e-12 Score=94.24 Aligned_cols=94 Identities=18% Similarity=0.155 Sum_probs=64.8
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.+.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..++.+++|++|+
T Consensus 52 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp TTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred cCCcEEECCCCcCCccCHH-HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence 4567777777776654443 567777777777777777766666677777777777777777755444677777778888
Q ss_pred ccCccccc-cCCCCCc
Q 041065 132 IQLNRLDG-SWRMCTC 146 (148)
Q Consensus 132 l~~N~l~g-~iP~~~~ 146 (148)
+++|++++ .+|..++
T Consensus 131 l~~n~l~~~~l~~~~~ 146 (276)
T 2z62_A 131 VAHNLIQSFKLPEYFS 146 (276)
T ss_dssp CCSSCCCCCCCCGGGG
T ss_pred CcCCccceecCchhhc
Confidence 87777774 3565544
No 63
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.38 E-value=2.3e-12 Score=96.11 Aligned_cols=94 Identities=26% Similarity=0.365 Sum_probs=73.0
Q ss_pred ccccceeeCCC----------CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCC
Q 041065 41 VSSKTSPCNDA----------GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGS 110 (148)
Q Consensus 41 c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~ 110 (148)
|.+..+.|... .+++.|++++|.+.+..+. .+..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKD-DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHh-HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 67888887632 3689999999999866565 789999999999999999987788899999999999998
Q ss_pred CcccccCCccccCCCCCcEEEccCcccc
Q 041065 111 NQFFGNIPAEVGLLSHLEVLHIQLNRLD 138 (148)
Q Consensus 111 n~l~g~~p~~~~~l~~L~~L~l~~N~l~ 138 (148)
|+++ .+|..+. ++|++|++++|+++
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~ 136 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIR 136 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCC
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccC
Confidence 8887 5665443 45555555555555
No 64
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.38 E-value=9.7e-13 Score=104.49 Aligned_cols=91 Identities=19% Similarity=0.149 Sum_probs=70.6
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.+.+..+. .+..+++|++|++++|.+++..|..|..+++|++|++++|+++ .+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMP-DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGG-GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChh-hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 4688888888888866555 7888888888888888888777777888888888888888887 56765 678888888
Q ss_pred ccCccccc-cCCCCCc
Q 041065 132 IQLNRLDG-SWRMCTC 146 (148)
Q Consensus 132 l~~N~l~g-~iP~~~~ 146 (148)
+++|++++ .+|..++
T Consensus 128 Ls~N~l~~l~~p~~~~ 143 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFG 143 (562)
T ss_dssp CCSSCCSBCCCCGGGG
T ss_pred CCCCCccccCchHhhc
Confidence 88888875 4455554
No 65
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.37 E-value=9.1e-13 Score=89.25 Aligned_cols=92 Identities=16% Similarity=0.103 Sum_probs=66.5
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccC-CCccccCCCCCceeecCCCcccccCC---ccccCCCCC
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGT-IPPQISNLSNLRYIYLGSNQFFGNIP---AEVGLLSHL 127 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~-~p~~~~~l~~L~~L~ls~n~l~g~~p---~~~~~l~~L 127 (148)
.+++.|++++|.+.+.+|. .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|
T Consensus 71 ~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 71 PKLKKLELSENRIFGGLDM-LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp SSCCEEEEESCCCCSCCCH-HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred CCCCEEECcCCcCchHHHH-HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence 4678888888888765554 455578888888888888753 22567778888888888888874433 367778888
Q ss_pred cEEEccCccccccCCCCC
Q 041065 128 EVLHIQLNRLDGSWRMCT 145 (148)
Q Consensus 128 ~~L~l~~N~l~g~iP~~~ 145 (148)
++|++++|.+. ++|+..
T Consensus 150 ~~L~l~~n~~~-~~~~~~ 166 (168)
T 2ell_A 150 TYLDGYDREDQ-EAPDSD 166 (168)
T ss_dssp CEETTEETTSC-BCCSSS
T ss_pred cEecCCCCChh-hccccc
Confidence 88888888777 677653
No 66
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=2.2e-12 Score=96.65 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=75.9
Q ss_pred EEEcCCC-CccceecCCCCCCCCCCcEEEccc-CccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEcc
Q 041065 56 NISLPNR-GVNGTLHDFSFSSFPHLAYLDLTW-NGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQ 133 (148)
Q Consensus 56 ~L~l~~n-~l~~~~p~~~~~~l~~L~~L~ls~-n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~ 133 (148)
.++.+++ +++. +|. +..+++|+.|+|++ |.+++..+..|..+++|++|+|++|+|++..|..|..+++|+.|+|+
T Consensus 12 ~v~~~~~n~l~~-ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCTT-TTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCCc-cCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4588888 8874 774 88999999999996 99997777889999999999999999999888899999999999999
Q ss_pred CccccccCCCCC
Q 041065 134 LNRLDGSWRMCT 145 (148)
Q Consensus 134 ~N~l~g~iP~~~ 145 (148)
+|+|+ .+|+.+
T Consensus 89 ~N~l~-~~~~~~ 99 (347)
T 2ifg_A 89 FNALE-SLSWKT 99 (347)
T ss_dssp SSCCS-CCCSTT
T ss_pred CCccc-eeCHHH
Confidence 99999 566543
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.37 E-value=4e-12 Score=92.35 Aligned_cols=85 Identities=21% Similarity=0.294 Sum_probs=43.4
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
+++.|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 110 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 188 (270)
T 2o6q_A 110 NLAELRLDRNQLKSLPPR-VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188 (270)
T ss_dssp SCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccCeeCHH-HhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEEC
Confidence 344444444444433332 3445555555555555555333333455555555555555555433334555556666666
Q ss_pred cCcccc
Q 041065 133 QLNRLD 138 (148)
Q Consensus 133 ~~N~l~ 138 (148)
++|+++
T Consensus 189 ~~N~l~ 194 (270)
T 2o6q_A 189 DNNQLK 194 (270)
T ss_dssp CSSCCS
T ss_pred CCCcCC
Confidence 666555
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.36 E-value=1.8e-12 Score=95.52 Aligned_cols=87 Identities=22% Similarity=0.335 Sum_probs=54.1
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCcccc-CCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFG-TIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL 130 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g-~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L 130 (148)
.+++.|++++|.+.+..+. .+..+++|++|++++|.+++ .+|..+..+++|++|++++|++++..|..+..+++|+.|
T Consensus 126 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 204 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204 (306)
T ss_dssp TTCCEEECTTSCCEECSTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCCccchh-hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEE
Confidence 3455666666665554443 55666666666666666654 355566666666666666666665556666666666666
Q ss_pred EccCccccc
Q 041065 131 HIQLNRLDG 139 (148)
Q Consensus 131 ~l~~N~l~g 139 (148)
++++|++++
T Consensus 205 ~L~~N~l~~ 213 (306)
T 2z66_A 205 NMSHNNFFS 213 (306)
T ss_dssp ECTTSCCSB
T ss_pred ECCCCccCc
Confidence 666666664
No 69
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.36 E-value=4.3e-13 Score=105.29 Aligned_cols=84 Identities=24% Similarity=0.291 Sum_probs=55.3
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccc-cCCccccCCCCCcEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFG-NIPAEVGLLSHLEVL 130 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g-~~p~~~~~l~~L~~L 130 (148)
.+++.|++++|.+++..|. .|..+++|++|++++|.++ .+|.. .+++|++|++++|++++ .+|..++.+++|++|
T Consensus 45 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L 120 (520)
T 2z7x_B 45 SKLRILIISHNRIQYLDIS-VFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120 (520)
T ss_dssp TTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred ccccEEecCCCccCCcChH-HhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence 4566677777766655554 6666677777777777666 45544 56667777777777665 456666777777777
Q ss_pred EccCccccc
Q 041065 131 HIQLNRLDG 139 (148)
Q Consensus 131 ~l~~N~l~g 139 (148)
++++|++++
T Consensus 121 ~L~~n~l~~ 129 (520)
T 2z7x_B 121 GLSTTHLEK 129 (520)
T ss_dssp EEEESSCCG
T ss_pred EecCcccch
Confidence 777776654
No 70
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.36 E-value=1.8e-12 Score=90.09 Aligned_cols=86 Identities=20% Similarity=0.294 Sum_probs=58.8
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++.+.+| .+..+++|++|+
T Consensus 88 ~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~ 165 (197)
T 4ezg_A 88 SNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLN 165 (197)
T ss_dssp TTCCEEEEECTTCBGGGSC-CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEE
T ss_pred CCCCEEEeECCccCcccCh-hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEE
Confidence 4567777777777665554 67777777777777777776666667777777777777776222555 466777777777
Q ss_pred ccCccccc
Q 041065 132 IQLNRLDG 139 (148)
Q Consensus 132 l~~N~l~g 139 (148)
+++|++++
T Consensus 166 l~~n~i~~ 173 (197)
T 4ezg_A 166 IQFDGVHD 173 (197)
T ss_dssp CTTBCCCC
T ss_pred CCCCCCcC
Confidence 77777763
No 71
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.36 E-value=2.3e-12 Score=95.88 Aligned_cols=92 Identities=16% Similarity=0.220 Sum_probs=75.2
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.+.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|+
T Consensus 192 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~ 269 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 269 (330)
T ss_dssp TTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred ccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEE
Confidence 4678888888888866565 7888899999999999998777777888899999999999998 7888888889999999
Q ss_pred ccCccccccCCCCC
Q 041065 132 IQLNRLDGSWRMCT 145 (148)
Q Consensus 132 l~~N~l~g~iP~~~ 145 (148)
+++|++++.-+..+
T Consensus 270 l~~N~i~~~~~~~f 283 (330)
T 1xku_A 270 LHNNNISAIGSNDF 283 (330)
T ss_dssp CCSSCCCCCCTTSS
T ss_pred CCCCcCCccChhhc
Confidence 99999884333333
No 72
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.35 E-value=3.3e-12 Score=99.35 Aligned_cols=94 Identities=18% Similarity=0.071 Sum_probs=72.2
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|+|++|.+.+..|. .|..+++|++|+|++|.++...+..|.++++|++|++++|++++..|..+..+++|++|+
T Consensus 56 ~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPG-AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccCEeChh-hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 5688888888888876665 788888888888888888754444577888888888888888877777778888888888
Q ss_pred ccCccccccCCCCCc
Q 041065 132 IQLNRLDGSWRMCTC 146 (148)
Q Consensus 132 l~~N~l~g~iP~~~~ 146 (148)
+++|.+++..|..+.
T Consensus 135 l~~n~l~~~~~~~~~ 149 (477)
T 2id5_A 135 VGDNDLVYISHRAFS 149 (477)
T ss_dssp ECCTTCCEECTTSST
T ss_pred CCCCccceeChhhcc
Confidence 888887766555544
No 73
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.35 E-value=2.2e-12 Score=101.92 Aligned_cols=89 Identities=21% Similarity=0.285 Sum_probs=49.2
Q ss_pred CeEEEEcCCCCcc-ceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 53 RVINISLPNRGVN-GTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 53 ~l~~L~l~~n~l~-~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
+++.|++++|.+. +.+|. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|+.|+
T Consensus 446 ~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 524 (570)
T 2z63_A 446 SLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524 (570)
T ss_dssp TCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cCcEEECcCCcCccccchh-hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEE
Confidence 4555555555554 34443 455555555555555555555555555555555555555555544444555555555555
Q ss_pred ccCccccccCC
Q 041065 132 IQLNRLDGSWR 142 (148)
Q Consensus 132 l~~N~l~g~iP 142 (148)
+++|++++.+|
T Consensus 525 l~~N~~~~~~~ 535 (570)
T 2z63_A 525 LHTNPWDCSCP 535 (570)
T ss_dssp CCSSCBCCCTT
T ss_pred ecCCcccCCCc
Confidence 55555555554
No 74
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=1.8e-12 Score=88.66 Aligned_cols=87 Identities=16% Similarity=0.151 Sum_probs=73.7
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCc--cccCCCCCcE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPA--EVGLLSHLEV 129 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~--~~~~l~~L~~ 129 (148)
.+++.|++++|.+++. + .+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|. .+..+++|++
T Consensus 42 ~~L~~L~Ls~N~l~~~-~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~ 117 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL-D--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTY 117 (176)
T ss_dssp TCCSEEECCSSCCCEE-C--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCE
T ss_pred CCCCEEECCCCCCCcc-c--ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCE
Confidence 3789999999999864 3 7899999999999999998543344588999999999999996 6776 7889999999
Q ss_pred EEccCccccccCCC
Q 041065 130 LHIQLNRLDGSWRM 143 (148)
Q Consensus 130 L~l~~N~l~g~iP~ 143 (148)
|++++|.++ .+|.
T Consensus 118 L~l~~N~i~-~~~~ 130 (176)
T 1a9n_A 118 LCILRNPVT-NKKH 130 (176)
T ss_dssp EECCSSGGG-GSTT
T ss_pred EEecCCCCC-CcHh
Confidence 999999998 6665
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.35 E-value=3.4e-13 Score=99.99 Aligned_cols=87 Identities=18% Similarity=0.236 Sum_probs=62.5
Q ss_pred CCeEEEEcCCCCccceecCCCC--CCCCCCcEEEcccCccccCCCccccCC-----CCCceeecCCCcccccCCccccCC
Q 041065 52 GRVINISLPNRGVNGTLHDFSF--SSFPHLAYLDLTWNGFFGTIPPQISNL-----SNLRYIYLGSNQFFGNIPAEVGLL 124 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~--~~l~~L~~L~ls~n~l~g~~p~~~~~l-----~~L~~L~ls~n~l~g~~p~~~~~l 124 (148)
.++++|++++|.+++.+|. .+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++++..|..++.+
T Consensus 95 ~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPP-PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCC-CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CCccEEEccCCcccchhHH-HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4677777777777777775 44 6777777777777777765 6656555 777777777777776656677777
Q ss_pred CCCcEEEccCcccccc
Q 041065 125 SHLEVLHIQLNRLDGS 140 (148)
Q Consensus 125 ~~L~~L~l~~N~l~g~ 140 (148)
++|++|++++|++.|.
T Consensus 173 ~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 173 PALSTLDLSDNPELGE 188 (312)
T ss_dssp SSCCEEECCSCTTCHH
T ss_pred CCCCEEECCCCCcCcc
Confidence 7777777777776654
No 76
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.35 E-value=2.8e-12 Score=101.37 Aligned_cols=94 Identities=21% Similarity=0.283 Sum_probs=86.0
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccc-cCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFF-GTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL 130 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~-g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L 130 (148)
.+++.|++++|.+.+..+. .+..+++|++|++++|.+. +.+|..+..+++|++|++++|++++..|..+..+++|++|
T Consensus 421 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp TTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEeCcCCcccccchh-hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 5799999999999988886 8999999999999999997 6789999999999999999999998889999999999999
Q ss_pred EccCccccccCCCCCc
Q 041065 131 HIQLNRLDGSWRMCTC 146 (148)
Q Consensus 131 ~l~~N~l~g~iP~~~~ 146 (148)
++++|++++..|..+.
T Consensus 500 ~l~~n~l~~~~~~~~~ 515 (570)
T 2z63_A 500 NMASNQLKSVPDGIFD 515 (570)
T ss_dssp ECCSSCCSCCCTTTTT
T ss_pred eCCCCcCCCCCHHHhh
Confidence 9999999976666554
No 77
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.35 E-value=5.1e-12 Score=96.02 Aligned_cols=92 Identities=16% Similarity=0.125 Sum_probs=64.5
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCcc-ccCCCCCcEEE
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAE-VGLLSHLEVLH 131 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~-~~~l~~L~~L~ 131 (148)
+++.|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|+++ .+|.. +..+++|++|+
T Consensus 70 ~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred cCcEEECCCCcccccChh-hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEE
Confidence 566777777777654444 6777777888888887777666666777777788888777777 45544 46777777777
Q ss_pred ccCccccccCCCCCc
Q 041065 132 IQLNRLDGSWRMCTC 146 (148)
Q Consensus 132 l~~N~l~g~iP~~~~ 146 (148)
+++|++++..|..++
T Consensus 148 L~~n~l~~~~~~~~~ 162 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQ 162 (390)
T ss_dssp CCSSCCCBCCTTTTS
T ss_pred CCCCccCccChhhcc
Confidence 777777755554443
No 78
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.34 E-value=1.5e-12 Score=102.29 Aligned_cols=94 Identities=15% Similarity=0.185 Sum_probs=74.5
Q ss_pred CCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCcccc--CCCccccCCCCCceeecCCCcccccCCcc-ccCCCCC
Q 041065 51 AGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFG--TIPPQISNLSNLRYIYLGSNQFFGNIPAE-VGLLSHL 127 (148)
Q Consensus 51 ~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g--~~p~~~~~l~~L~~L~ls~n~l~g~~p~~-~~~l~~L 127 (148)
...++.|++++|.+.+.+|. .+..+++|++|++++|.+++ .+|..+..+++|++|++++|++++.+|.. +..+++|
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred CCcccEEEeECCccChhhhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 35788889998888877776 78888888888888888876 56667888888888888888888757764 6777788
Q ss_pred cEEEccCccccccCCCCC
Q 041065 128 EVLHIQLNRLDGSWRMCT 145 (148)
Q Consensus 128 ~~L~l~~N~l~g~iP~~~ 145 (148)
++|++++|++++.+|..+
T Consensus 402 ~~L~Ls~N~l~~~~~~~l 419 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCL 419 (520)
T ss_dssp CEEECCSSCCCGGGGGSC
T ss_pred CEEECcCCCCCcchhhhh
Confidence 888888888877776554
No 79
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.33 E-value=7.1e-12 Score=96.83 Aligned_cols=88 Identities=20% Similarity=0.179 Sum_probs=75.5
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
..++.|+|++|.+.+..+. .|..+++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 3578999999999876665 899999999999999999877778899999999999999999955455788999999999
Q ss_pred ccCcccccc
Q 041065 132 IQLNRLDGS 140 (148)
Q Consensus 132 l~~N~l~g~ 140 (148)
+++|++++.
T Consensus 143 L~~N~i~~~ 151 (440)
T 3zyj_A 143 LRNNPIESI 151 (440)
T ss_dssp CCSCCCCEE
T ss_pred CCCCccccc
Confidence 999998843
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.33 E-value=2e-12 Score=101.46 Aligned_cols=101 Identities=17% Similarity=0.136 Sum_probs=53.3
Q ss_pred ccceeeCCCCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCcccc-----------------------C
Q 041065 43 SKTSPCNDAGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQIS-----------------------N 99 (148)
Q Consensus 43 ~~gv~c~~~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~-----------------------~ 99 (148)
+.++.+.....++.|++++|.+++..|. .+..+++|++|++++|.+++.+|..+. .
T Consensus 111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~ 189 (487)
T 3oja_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189 (487)
T ss_dssp CCCEEECCCSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC
T ss_pred CCCCCccccCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccccc
Confidence 3334443334455555555555544443 444445555555555555444443332 3
Q ss_pred CCCCceeecCCCcccccCCccccCCCCCcEEEccCccccccCCCCCc
Q 041065 100 LSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTC 146 (148)
Q Consensus 100 l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~ 146 (148)
+++|++|+|++|.+++ +|..+..+++|+.|++++|.++ .+|..++
T Consensus 190 l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~ 234 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALR 234 (487)
T ss_dssp CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCC
T ss_pred CCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhc
Confidence 5566666666666664 3444666667777777777776 3565543
No 81
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.33 E-value=2.8e-12 Score=101.12 Aligned_cols=91 Identities=23% Similarity=0.231 Sum_probs=72.5
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccc-cCCccccCCCCCcEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFG-NIPAEVGLLSHLEVL 130 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g-~~p~~~~~l~~L~~L 130 (148)
.++++|++++|.+.+..+. .|..+++|++|++++|.+++..|..++++++|++|++++|++++ .+|..++.+++|++|
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGD-AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CcccEEECCCCCcCccChh-hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 5788899999988876665 78888889999999998887666668888888888888888875 356677888888888
Q ss_pred EccCccccccCCC
Q 041065 131 HIQLNRLDGSWRM 143 (148)
Q Consensus 131 ~l~~N~l~g~iP~ 143 (148)
++++|++.+.+|.
T Consensus 129 ~L~~n~~~~~~~~ 141 (549)
T 2z81_A 129 RIGNVETFSEIRR 141 (549)
T ss_dssp EEEESSSCCEECT
T ss_pred ECCCCccccccCH
Confidence 8888876556663
No 82
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.33 E-value=3.6e-12 Score=94.84 Aligned_cols=95 Identities=21% Similarity=0.329 Sum_probs=72.9
Q ss_pred CccccceeeCCC----------CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecC
Q 041065 40 NVSSKTSPCNDA----------GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLG 109 (148)
Q Consensus 40 ~c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls 109 (148)
.|.++.+.|... ..++.|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG-DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh-hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 366787777532 3688999999999876554 78899999999999999997778889999999999999
Q ss_pred CCcccccCCccccCCCCCcEEEccCcccc
Q 041065 110 SNQFFGNIPAEVGLLSHLEVLHIQLNRLD 138 (148)
Q Consensus 110 ~n~l~g~~p~~~~~l~~L~~L~l~~N~l~ 138 (148)
+|+++ .+|..+. ++|++|++++|+++
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~ 134 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEIT 134 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCC
T ss_pred CCcCC-ccChhhc--ccccEEECCCCccc
Confidence 99887 5665432 45555555555554
No 83
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.33 E-value=2.8e-12 Score=107.03 Aligned_cols=90 Identities=23% Similarity=0.320 Sum_probs=74.0
Q ss_pred CeEEEEcCCCCccceecCCCCC--CCCCCcEEEcccCccccCCCccccCCCCCceeecCC------CcccccCCccccCC
Q 041065 53 RVINISLPNRGVNGTLHDFSFS--SFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGS------NQFFGNIPAEVGLL 124 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~--~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~------n~l~g~~p~~~~~l 124 (148)
+++.|+|++|.++ .+|. .+. .+++|+.|+|++|.+++ +|..+..+++|+.|+|++ |++.+.+|..+..+
T Consensus 729 ~L~~L~Ls~N~L~-~lp~-~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 729 LLTTIDLRFNKLT-SLSD-DFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp GCCEEECCSSCCC-CCCG-GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred CccEEECCCCCCc-cchH-HhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 6888888888887 5665 665 78888888888888886 788888888888888866 77788888888888
Q ss_pred CCCcEEEccCccccccCCCCCc
Q 041065 125 SHLEVLHIQLNRLDGSWRMCTC 146 (148)
Q Consensus 125 ~~L~~L~l~~N~l~g~iP~~~~ 146 (148)
++|+.|+|++|++ +.||..++
T Consensus 806 ~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 806 PSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp SSCCEEECCSSCC-CBCCSCCC
T ss_pred CCCCEEECCCCCC-CccCHhhc
Confidence 8888899988888 68887654
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.33 E-value=2.1e-12 Score=92.15 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=68.3
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCc-cccCCCccccCCCCCceeecCC-CcccccCCccccCCCCCcE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNG-FFGTIPPQISNLSNLRYIYLGS-NQFFGNIPAEVGLLSHLEV 129 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~-l~g~~p~~~~~l~~L~~L~ls~-n~l~g~~p~~~~~l~~L~~ 129 (148)
..++.|++++|.+++..+. .+..+++|++|++++|. ++...+..|..+++|++|++++ |++++..+..|..+++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSH-AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTT-TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHH-HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 3678888888888755443 67788888888888886 7654455678888888888887 8888555567778888888
Q ss_pred EEccCccccccCCC
Q 041065 130 LHIQLNRLDGSWRM 143 (148)
Q Consensus 130 L~l~~N~l~g~iP~ 143 (148)
|++++|++++ +|.
T Consensus 110 L~l~~n~l~~-lp~ 122 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD 122 (239)
T ss_dssp EEEEEECCCS-CCC
T ss_pred EeCCCCCCcc-ccc
Confidence 8888888774 665
No 85
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.32 E-value=4e-12 Score=101.37 Aligned_cols=92 Identities=16% Similarity=0.062 Sum_probs=75.1
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.++++|++++|.+.+..|. .|..+++|++|++++|.+++..|..|..+++|++|++++|++++..|..++.+++|++|+
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ 135 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHED-TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135 (606)
T ss_dssp TTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEE
T ss_pred ccceEEECCCCccceeChh-hccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEE
Confidence 5788889999888876675 788888999999999988877788888888888888888888865566788888888888
Q ss_pred ccCccccc-cCCCC
Q 041065 132 IQLNRLDG-SWRMC 144 (148)
Q Consensus 132 l~~N~l~g-~iP~~ 144 (148)
+++|++++ .+|..
T Consensus 136 L~~n~l~~~~~~~~ 149 (606)
T 3t6q_A 136 LGSNHISSIKLPKG 149 (606)
T ss_dssp CCSSCCCCCCCCTT
T ss_pred CCCCcccccCcccc
Confidence 88888885 34544
No 86
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.32 E-value=3.3e-12 Score=103.18 Aligned_cols=94 Identities=15% Similarity=0.077 Sum_probs=63.3
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.++++|++++|.+.+..|. .+..+++|++|++++|.+++..+..|.++++|++|++++|++++..|..|+++++|++|+
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp TTCSEEECCSSCCCCCCTT-HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred CcCcEEECCCCccCccCHH-HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence 3566666666666655554 566677777777777777643333577777777777777777755556677777777777
Q ss_pred ccCccccccCCCCCc
Q 041065 132 IQLNRLDGSWRMCTC 146 (148)
Q Consensus 132 l~~N~l~g~iP~~~~ 146 (148)
+++|++++..|..++
T Consensus 128 Ls~n~l~~~~~~~~~ 142 (680)
T 1ziw_A 128 LSHNGLSSTKLGTQV 142 (680)
T ss_dssp CCSSCCSCCCCCSSS
T ss_pred CCCCcccccCchhhc
Confidence 777777766665543
No 87
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.31 E-value=2.7e-12 Score=89.19 Aligned_cols=88 Identities=13% Similarity=0.203 Sum_probs=76.0
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.+.. ++ .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 66 ~~L~~L~l~~n~~~~-~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 66 HNIKDLTINNIHATN-YN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp TTCSEEEEESCCCSC-CG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred CCCCEEEccCCCCCc-ch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 578999999996652 33 688899999999999999988888899999999999999999988888899999999999
Q ss_pred ccCccccccCC
Q 041065 132 IQLNRLDGSWR 142 (148)
Q Consensus 132 l~~N~l~g~iP 142 (148)
+++|++.+.+|
T Consensus 143 L~~n~~i~~~~ 153 (197)
T 4ezg_A 143 LSYNGAITDIM 153 (197)
T ss_dssp CCSCTBCCCCG
T ss_pred ccCCCCccccH
Confidence 99998444666
No 88
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.31 E-value=4.6e-12 Score=100.61 Aligned_cols=94 Identities=18% Similarity=0.225 Sum_probs=69.3
Q ss_pred CCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCcccc--CCCccccCCCCCceeecCCCcccccCCcc-ccCCCCC
Q 041065 51 AGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFG--TIPPQISNLSNLRYIYLGSNQFFGNIPAE-VGLLSHL 127 (148)
Q Consensus 51 ~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g--~~p~~~~~l~~L~~L~ls~n~l~g~~p~~-~~~l~~L 127 (148)
..+++.|++++|.+++.+|. .+..+++|++|++++|.+++ .+|..+..+++|++|++++|++++.+|.. +..+++|
T Consensus 352 l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQ-GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTT-TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCceEEECCCCccccchhh-hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 35688888888888876775 77888888888888888875 23456778888888888888888656653 6666777
Q ss_pred cEEEccCccccccCCCCC
Q 041065 128 EVLHIQLNRLDGSWRMCT 145 (148)
Q Consensus 128 ~~L~l~~N~l~g~iP~~~ 145 (148)
++|++++|++++.+|..+
T Consensus 431 ~~L~l~~n~l~~~~~~~l 448 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCL 448 (562)
T ss_dssp CEEECCSSCCCGGGGSSC
T ss_pred CEEECCCCCCCcchhhhh
Confidence 777777777776666544
No 89
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.31 E-value=3.8e-12 Score=102.86 Aligned_cols=90 Identities=18% Similarity=0.134 Sum_probs=67.1
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.++. +|...|..+++|++|++++|.+++..|..|.++++|++|++++|.+++..|..++.+++|++|+
T Consensus 73 ~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 151 (680)
T 1ziw_A 73 PMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL 151 (680)
T ss_dssp TTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE
T ss_pred cCcCEEECCCCccCc-cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEE
Confidence 467788888887774 3332577788888888888888765566777888888888888888777777777788888888
Q ss_pred ccCccccccCC
Q 041065 132 IQLNRLDGSWR 142 (148)
Q Consensus 132 l~~N~l~g~iP 142 (148)
+++|++++..|
T Consensus 152 L~~n~l~~~~~ 162 (680)
T 1ziw_A 152 LSNNKIQALKS 162 (680)
T ss_dssp CCSSCCCCBCH
T ss_pred ccCCcccccCH
Confidence 88887775444
No 90
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.31 E-value=4.9e-12 Score=104.96 Aligned_cols=93 Identities=19% Similarity=0.169 Sum_probs=63.3
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCcc--ccCCCCCceeecCCCcccccCC-ccccCCCCCc
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQ--ISNLSNLRYIYLGSNQFFGNIP-AEVGLLSHLE 128 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~--~~~l~~L~~L~ls~n~l~g~~p-~~~~~l~~L~ 128 (148)
.+++.|+|++|.+.+..|. .|.++++|++|+|++|.+++.+|.. +.++++|++|++++|.+++..+ ..++++++|+
T Consensus 73 ~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 73 PNLRILDLGSSKIYFLHPD-AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151 (844)
T ss_dssp TTCCEEECTTCCCCEECTT-SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred CCCCEEECCCCcCcccCHh-HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence 4577777777777766565 6777777777777777777655554 6677777777777777765443 4567777777
Q ss_pred EEEccCccccccCCCCC
Q 041065 129 VLHIQLNRLDGSWRMCT 145 (148)
Q Consensus 129 ~L~l~~N~l~g~iP~~~ 145 (148)
+|++++|.+++..|..+
T Consensus 152 ~L~Ls~N~i~~~~~~~l 168 (844)
T 3j0a_A 152 SIDFSSNQIFLVCEHEL 168 (844)
T ss_dssp EEEEESSCCCCCCSGGG
T ss_pred EEECCCCcCCeeCHHHc
Confidence 77777777776655544
No 91
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.30 E-value=2.9e-12 Score=95.49 Aligned_cols=91 Identities=19% Similarity=0.184 Sum_probs=76.3
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.+.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|+
T Consensus 193 ~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~ 270 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELE-DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY 270 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTT-SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEE
Confidence 4678888888888876655 7888999999999999998777778889999999999999998 7888899999999999
Q ss_pred ccCccccccCCCC
Q 041065 132 IQLNRLDGSWRMC 144 (148)
Q Consensus 132 l~~N~l~g~iP~~ 144 (148)
+++|++++.-+..
T Consensus 271 l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 271 LHTNNITKVGVND 283 (332)
T ss_dssp CCSSCCCBCCTTS
T ss_pred CCCCCCCccChhH
Confidence 9999998443333
No 92
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.30 E-value=1.6e-12 Score=98.75 Aligned_cols=92 Identities=17% Similarity=0.130 Sum_probs=79.9
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.++++++.+. .+|...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 46788999999877 45642467899999999999999977777899999999999999999977778899999999999
Q ss_pred ccCccccccCCCCC
Q 041065 132 IQLNRLDGSWRMCT 145 (148)
Q Consensus 132 l~~N~l~g~iP~~~ 145 (148)
+++|+++ .+|..+
T Consensus 124 L~~n~l~-~l~~~~ 136 (390)
T 3o6n_A 124 LERNDLS-SLPRGI 136 (390)
T ss_dssp CCSSCCC-CCCTTT
T ss_pred CCCCccC-cCCHHH
Confidence 9999999 777653
No 93
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.28 E-value=1.4e-11 Score=95.21 Aligned_cols=85 Identities=16% Similarity=0.173 Sum_probs=60.1
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.++ .+| .+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+.|+
T Consensus 185 ~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 261 (440)
T 3zyj_A 185 SNLRYLNLAMCNLR-EIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261 (440)
T ss_dssp SSCCEEECTTSCCS-SCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEE
T ss_pred cccCeecCCCCcCc-ccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEE
Confidence 35666666666665 344 366677777777777777766677777777777777777777766666777777778888
Q ss_pred ccCccccc
Q 041065 132 IQLNRLDG 139 (148)
Q Consensus 132 l~~N~l~g 139 (148)
|++|++++
T Consensus 262 L~~N~l~~ 269 (440)
T 3zyj_A 262 LAHNNLTL 269 (440)
T ss_dssp CTTSCCCC
T ss_pred CCCCCCCc
Confidence 88777773
No 94
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.28 E-value=1.5e-11 Score=95.39 Aligned_cols=85 Identities=18% Similarity=0.181 Sum_probs=64.4
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.+++ +| .+..+++|+.|++++|.+++..|..|..+++|++|++++|++++..|..|..+++|+.|+
T Consensus 196 ~~L~~L~L~~n~l~~-~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 272 (452)
T 3zyi_A 196 FNLKYLNLGMCNIKD-MP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272 (452)
T ss_dssp TTCCEEECTTSCCSS-CC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcccc-cc--cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEE
Confidence 356677777777663 34 466777788888888888777777788888888888888888877777788888888888
Q ss_pred ccCccccc
Q 041065 132 IQLNRLDG 139 (148)
Q Consensus 132 l~~N~l~g 139 (148)
|++|++++
T Consensus 273 L~~N~l~~ 280 (452)
T 3zyi_A 273 LAHNNLSS 280 (452)
T ss_dssp CCSSCCSC
T ss_pred CCCCcCCc
Confidence 88888873
No 95
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.27 E-value=1.7e-11 Score=98.20 Aligned_cols=87 Identities=16% Similarity=0.137 Sum_probs=77.1
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|+|++|.+.+..+. .|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..++.+++|++|+
T Consensus 99 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 177 (597)
T 3oja_B 99 HTIQKLYMGFNAIRYLPPH-VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177 (597)
T ss_dssp TTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCCCCHH-HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE
Confidence 5799999999999986665 789999999999999999954444578999999999999999988888899999999999
Q ss_pred ccCccccc
Q 041065 132 IQLNRLDG 139 (148)
Q Consensus 132 l~~N~l~g 139 (148)
+++|.+++
T Consensus 178 L~~N~l~~ 185 (597)
T 3oja_B 178 LSSNRLTH 185 (597)
T ss_dssp CTTSCCSB
T ss_pred CcCCCCCC
Confidence 99999885
No 96
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=9.4e-12 Score=84.99 Aligned_cols=86 Identities=14% Similarity=0.069 Sum_probs=72.3
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCC-CCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFP-HLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL 130 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~-~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L 130 (148)
.+++.|++++|.++. ++ .+..+. +|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 19 ~~L~~L~l~~n~l~~-i~--~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV-IE--NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TSCEEEECTTSCCCS-CC--CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCceEEEeeCCCCch-hH--HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 478999999999984 55 455555 999999999999864 678999999999999999995444445899999999
Q ss_pred EccCccccccCCC
Q 041065 131 HIQLNRLDGSWRM 143 (148)
Q Consensus 131 ~l~~N~l~g~iP~ 143 (148)
++++|+++ .+|.
T Consensus 94 ~L~~N~i~-~~~~ 105 (176)
T 1a9n_A 94 ILTNNSLV-ELGD 105 (176)
T ss_dssp ECCSCCCC-CGGG
T ss_pred ECCCCcCC-cchh
Confidence 99999996 6765
No 97
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.26 E-value=1.6e-11 Score=92.21 Aligned_cols=93 Identities=24% Similarity=0.279 Sum_probs=72.9
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCc--cccCCCCCcE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPA--EVGLLSHLEV 129 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~--~~~~l~~L~~ 129 (148)
.+++.|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|. .+..+++|++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEED-SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQI 153 (353)
T ss_dssp TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCE
T ss_pred CCCCEEECCCCccCccCHh-hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcE
Confidence 5789999999999876665 7889999999999999998543344888999999999999988 4555 6788888888
Q ss_pred EEccCcc-ccccCCCCCc
Q 041065 130 LHIQLNR-LDGSWRMCTC 146 (148)
Q Consensus 130 L~l~~N~-l~g~iP~~~~ 146 (148)
|++++|+ +++..|..++
T Consensus 154 L~l~~n~~~~~~~~~~~~ 171 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFA 171 (353)
T ss_dssp EEEEESSSCCEECTTTTT
T ss_pred EECCCCccccccCHHHcc
Confidence 8888884 5533344443
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.23 E-value=9.7e-12 Score=99.52 Aligned_cols=98 Identities=18% Similarity=0.289 Sum_probs=62.1
Q ss_pred CCCcCCCCCc-----cccce-eeCCCCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCce
Q 041065 32 SSCINDATNV-----SSKTS-PCNDAGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRY 105 (148)
Q Consensus 32 ~~W~~~~~~c-----~~~gv-~c~~~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~ 105 (148)
.+|..+..+| .|.++ .|. ..+++.|++++|++++ +|. .+ +++|++|++++|.++ .+| ..+++|++
T Consensus 34 ~~W~~~~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp~-~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~ 104 (571)
T 3cvr_A 34 DKWEKQALPGENRNEAVSLLKECL-INQFSELQLNRLNLSS-LPD-NL--PPQITVLEITQNALI-SLP---ELPASLEY 104 (571)
T ss_dssp HHHHTTCCTTCCHHHHHHHHHHHH-HTTCSEEECCSSCCSC-CCS-CC--CTTCSEEECCSSCCS-CCC---CCCTTCCE
T ss_pred HHHhccCCccccccchhhhccccc-cCCccEEEeCCCCCCc-cCH-hH--cCCCCEEECcCCCCc-ccc---cccCCCCE
Confidence 3565555667 68888 675 3578888888888876 664 34 366777777777776 555 34566666
Q ss_pred eecCCCcccccCCccccCCCCCcEEEccCccccccCCC
Q 041065 106 IYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRM 143 (148)
Q Consensus 106 L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 143 (148)
|++++|++++ +|. +.. +|++|++++|++++ ||.
T Consensus 105 L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~ 137 (571)
T 3cvr_A 105 LDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE 137 (571)
T ss_dssp EECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC
T ss_pred EEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC
Confidence 6666666664 555 433 55555555555553 443
No 99
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.22 E-value=2.3e-11 Score=95.50 Aligned_cols=89 Identities=19% Similarity=0.260 Sum_probs=71.1
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|+|++|.+++. + ....+++|+.|+|++|.+++ +|+.+..+++|+.|++++|.+++ +|..+..+++|+.|+
T Consensus 169 ~~L~~L~Ls~N~l~~~-~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~ 243 (487)
T 3oja_A 169 DTLEHLNLQYNFIYDV-K--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFD 243 (487)
T ss_dssp TTCCEEECTTSCCCEE-E--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEE
T ss_pred CcccEEecCCCccccc-c--ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEE
Confidence 4566666666666644 2 23458889999999999986 55568999999999999999995 888899999999999
Q ss_pred ccCcccc-ccCCCCC
Q 041065 132 IQLNRLD-GSWRMCT 145 (148)
Q Consensus 132 l~~N~l~-g~iP~~~ 145 (148)
+++|.+. +.+|..+
T Consensus 244 l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 244 LRGNGFHCGTLRDFF 258 (487)
T ss_dssp CTTCCBCHHHHHHHH
T ss_pred cCCCCCcCcchHHHH
Confidence 9999998 6666543
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.22 E-value=1.4e-11 Score=91.19 Aligned_cols=86 Identities=16% Similarity=0.065 Sum_probs=72.3
Q ss_pred CeEEEEcCCCCccceecCCCC--CCCCCCcEEEcccCccccCCC----ccccCCCCCceeecCCCcccccCCccccCCCC
Q 041065 53 RVINISLPNRGVNGTLHDFSF--SSFPHLAYLDLTWNGFFGTIP----PQISNLSNLRYIYLGSNQFFGNIPAEVGLLSH 126 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~--~~l~~L~~L~ls~n~l~g~~p----~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~ 126 (148)
++++|++++|.+.+..|. .+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..|..+..+++
T Consensus 92 ~L~~L~l~~n~l~~~~~~-~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPP-LPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp CCCEEEEESCCCBSCCCC-CSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred ceeEEEeeCCEeccchhh-hhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 488999999999988886 66 889999999999999987655 34557889999999999998777788889999
Q ss_pred CcEEEccCccccc
Q 041065 127 LEVLHIQLNRLDG 139 (148)
Q Consensus 127 L~~L~l~~N~l~g 139 (148)
|++|++++|++.+
T Consensus 171 L~~L~Ls~N~l~~ 183 (310)
T 4glp_A 171 LTSLDLSDNPGLG 183 (310)
T ss_dssp CCEEECCSCTTCH
T ss_pred CCEEECCCCCCcc
Confidence 9999999998765
No 101
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.22 E-value=8.6e-12 Score=92.39 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=28.6
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccC--CCccc--cCCCCCceeecCCCccc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGT--IPPQI--SNLSNLRYIYLGSNQFF 114 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~--~p~~~--~~l~~L~~L~ls~n~l~ 114 (148)
+++.|++++|.+.+..+. .+..+++|++|++++|.+.+. +|..+ ..+++|++|++++|+++
T Consensus 150 ~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 150 GLKVLSIAQAHSLNFSCE-QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp TCCEEEEESCSCCCCCTT-TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred CCcEEEeeCCCCccchHH-HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence 455555555555543333 455555555555555554433 12222 34444444444444444
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.21 E-value=5.2e-12 Score=93.44 Aligned_cols=92 Identities=16% Similarity=0.123 Sum_probs=49.7
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccC--CC--ccccC---------------------------C
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGT--IP--PQISN---------------------------L 100 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~--~p--~~~~~---------------------------l 100 (148)
.+++.|++++|.+.+..+. .+..+++|++|++++|.+.+. ++ ..+.. +
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCE-QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTT-SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHH-HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 3566777777776655444 566667777777777765431 11 11233 3
Q ss_pred CCCceeecCCCcccccCCccccCC---CCCcEEEccCccccccCCCCC
Q 041065 101 SNLRYIYLGSNQFFGNIPAEVGLL---SHLEVLHIQLNRLDGSWRMCT 145 (148)
Q Consensus 101 ~~L~~L~ls~n~l~g~~p~~~~~l---~~L~~L~l~~N~l~g~iP~~~ 145 (148)
++|++|+|++|++++.+|..+..+ ++|++|++++|+++ .+|..+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~ 270 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL 270 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh
Confidence 455555555555554445444444 35555555555555 455443
No 103
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.20 E-value=3.3e-11 Score=89.46 Aligned_cols=89 Identities=17% Similarity=0.162 Sum_probs=55.8
Q ss_pred CeEEEEcCCCCccceecCCCC-CCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 53 RVINISLPNRGVNGTLHDFSF-SSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~-~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
+++.|++++|.+.+..+. .+ ..+++|++|++++|.+++. + ....+++|++|++++|++++ +|..+..+++|+.|+
T Consensus 145 ~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~ 220 (317)
T 3o53_A 145 RVQYLDLKLNEIDTVNFA-ELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS 220 (317)
T ss_dssp SEEEEECTTSCCCEEEGG-GGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEE
T ss_pred CCCEEECCCCCCCcccHH-HHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEE
Confidence 455566666655544443 33 2456666666666666533 2 23346777777777777773 555577778888888
Q ss_pred ccCccccccCCCCCc
Q 041065 132 IQLNRLDGSWRMCTC 146 (148)
Q Consensus 132 l~~N~l~g~iP~~~~ 146 (148)
+++|+++ .+|..+.
T Consensus 221 L~~N~l~-~l~~~~~ 234 (317)
T 3o53_A 221 LRNNKLV-LIEKALR 234 (317)
T ss_dssp CTTSCCC-EECTTCC
T ss_pred CcCCccc-chhhHhh
Confidence 8888887 5676554
No 104
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.20 E-value=4.5e-11 Score=88.71 Aligned_cols=86 Identities=20% Similarity=0.298 Sum_probs=49.8
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.+++. + ....+++|++|++++|.+++ +|+.+..+++|++|++++|+++ .+|..+..+++|+.|+
T Consensus 169 ~~L~~L~L~~N~l~~~-~--~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~ 243 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDV-K--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD 243 (317)
T ss_dssp TTCCEEECTTSCCCEE-E--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEE
T ss_pred CcCCEEECCCCcCccc-c--cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEE
Confidence 3566666666666533 2 22346666666666666653 3444666666666666666666 4555566666666666
Q ss_pred ccCcccc-ccCC
Q 041065 132 IQLNRLD-GSWR 142 (148)
Q Consensus 132 l~~N~l~-g~iP 142 (148)
+++|+++ +.+|
T Consensus 244 l~~N~~~~~~~~ 255 (317)
T 3o53_A 244 LRGNGFHCGTLR 255 (317)
T ss_dssp CTTCCCBHHHHH
T ss_pred ccCCCccCcCHH
Confidence 6666665 4433
No 105
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.18 E-value=3e-11 Score=86.04 Aligned_cols=81 Identities=12% Similarity=0.162 Sum_probs=40.1
Q ss_pred CCeEEEEcCCCC-ccceecCCCCCCCCCCcEEEccc-CccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCc-
Q 041065 52 GRVINISLPNRG-VNGTLHDFSFSSFPHLAYLDLTW-NGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLE- 128 (148)
Q Consensus 52 ~~l~~L~l~~n~-l~~~~p~~~~~~l~~L~~L~ls~-n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~- 128 (148)
.+++.|++++|. ++...+. .|..+++|++|++++ |.+++..+..|..+++|++|++++|++++ +|. +..+++|+
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~ 131 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDI 131 (239)
T ss_dssp TTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCS
T ss_pred CCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccccc
Confidence 345556666654 4432222 455555555555555 55554333445555555555555555542 443 44444444
Q ss_pred --EEEccCc
Q 041065 129 --VLHIQLN 135 (148)
Q Consensus 129 --~L~l~~N 135 (148)
+|++++|
T Consensus 132 L~~L~l~~N 140 (239)
T 2xwt_C 132 FFILEITDN 140 (239)
T ss_dssp EEEEEEESC
T ss_pred ccEEECCCC
Confidence 4444444
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.17 E-value=4.7e-11 Score=89.79 Aligned_cols=101 Identities=19% Similarity=0.253 Sum_probs=81.4
Q ss_pred ccccceeeCCC----------CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCc-cccCCCCCce-eec
Q 041065 41 VSSKTSPCNDA----------GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPP-QISNLSNLRY-IYL 108 (148)
Q Consensus 41 c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~-~~~~l~~L~~-L~l 108 (148)
|.+..|.|... ..+++|+|++|.++ .+|...|.++++|++|+|++|.+.+.+|. .|.++++++. +.+
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 55667777531 36899999999998 45544799999999999999999777765 5788888775 666
Q ss_pred CCCcccccCCccccCCCCCcEEEccCccccccCCC
Q 041065 109 GSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRM 143 (148)
Q Consensus 109 s~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 143 (148)
..|++++..|..|..+++|++|++++|+++ .+|+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~ 121 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPD 121 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCC
T ss_pred cCCcccccCchhhhhccccccccccccccc-cCCc
Confidence 779999766788999999999999999998 4443
No 107
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.09 E-value=1e-10 Score=91.15 Aligned_cols=86 Identities=22% Similarity=0.270 Sum_probs=44.4
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccc--cCCccccCC------
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFG--NIPAEVGLL------ 124 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g--~~p~~~~~l------ 124 (148)
+++.|++++|.+++ +|. . +++|++|++++|.++ .+|. .+++|++|++++|++++ .+|..++.+
T Consensus 318 ~L~~L~Ls~N~l~~-lp~-~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~ 388 (454)
T 1jl5_A 318 SLEELNVSNNKLIE-LPA-L---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHL 388 (454)
T ss_dssp TCCEEECCSSCCSC-CCC-C---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--
T ss_pred cCCEEECCCCcccc-ccc-c---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccc
Confidence 45666666666654 443 2 467788888888777 4665 46788888888888887 678777777
Q ss_pred -------CCCcEEEccCccccc--cCCCCCcC
Q 041065 125 -------SHLEVLHIQLNRLDG--SWRMCTCT 147 (148)
Q Consensus 125 -------~~L~~L~l~~N~l~g--~iP~~~~~ 147 (148)
++|+.|++++|+++| .||.++..
T Consensus 389 ~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~ 420 (454)
T 1jl5_A 389 AEVPELPQNLKQLHVETNPLREFPDIPESVED 420 (454)
T ss_dssp --------------------------------
T ss_pred cccccccCcCCEEECCCCcCCccccchhhHhh
Confidence 778888888888887 78877653
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.06 E-value=9.6e-11 Score=93.79 Aligned_cols=85 Identities=18% Similarity=0.195 Sum_probs=56.2
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCC-------ceeecCCCcccccCCccccCC
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNL-------RYIYLGSNQFFGNIPAEVGLL 124 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L-------~~L~ls~n~l~g~~p~~~~~l 124 (148)
.+++.|++++|.+++ +|. +. ++|++|++++|.++ .+|. +.. +| +.|+|++|+++ .+|..+..+
T Consensus 160 ~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l 229 (571)
T 3cvr_A 160 TSLEVLSVRNNQLTF-LPE--LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSL 229 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC--CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGS
T ss_pred CCcCEEECCCCCCCC-cch--hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcC
Confidence 345566666666554 442 33 66777777777776 5565 443 56 78888888887 677777778
Q ss_pred CCCcEEEccCccccccCCCCCc
Q 041065 125 SHLEVLHIQLNRLDGSWRMCTC 146 (148)
Q Consensus 125 ~~L~~L~l~~N~l~g~iP~~~~ 146 (148)
++|+.|+|++|+++|.+|..++
T Consensus 230 ~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 230 DPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp CTTEEEECCSSSCCHHHHHHHH
T ss_pred CCCCEEEeeCCcCCCcCHHHHH
Confidence 8888888888888877776543
No 109
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.05 E-value=2.8e-10 Score=84.91 Aligned_cols=86 Identities=17% Similarity=0.285 Sum_probs=61.2
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.+.. ++ .+..+++|++|++++|.+++. +.+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 243 ~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 243 SQLTWLEIGTNQISD-IN--AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317 (347)
T ss_dssp TTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred CCCCEEECCCCccCC-Ch--hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEE
Confidence 456666666666653 22 466777777777777777643 3467778888888888888777777778888888888
Q ss_pred ccCccccccCC
Q 041065 132 IQLNRLDGSWR 142 (148)
Q Consensus 132 l~~N~l~g~iP 142 (148)
+++|++++..|
T Consensus 318 L~~n~l~~~~~ 328 (347)
T 4fmz_A 318 LSQNHITDIRP 328 (347)
T ss_dssp CCSSSCCCCGG
T ss_pred ccCCccccccC
Confidence 88888875544
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.04 E-value=3.9e-10 Score=82.89 Aligned_cols=58 Identities=26% Similarity=0.366 Sum_probs=25.6
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCccc
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFF 114 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~ 114 (148)
.+++.|++++|.+.+ ++ .+..+++|++|++++|.+++. +.+..+++|++|++++|+++
T Consensus 90 ~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~ 147 (291)
T 1h6t_A 90 KNLGWLFLDENKVKD-LS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT 147 (291)
T ss_dssp TTCCEEECCSSCCCC-GG--GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCC
T ss_pred CCCCEEECCCCcCCC-Ch--hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCC
Confidence 345555555555543 22 244444444444444444421 23334444444444444443
No 111
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.04 E-value=1.6e-10 Score=86.24 Aligned_cols=83 Identities=16% Similarity=0.206 Sum_probs=72.1
Q ss_pred CCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065 51 AGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL 130 (148)
Q Consensus 51 ~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L 130 (148)
..+++.|++++|.+.+. + .+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..| +..+++|+.|
T Consensus 264 l~~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 338 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDI-S--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSA 338 (347)
T ss_dssp CTTCCEEECCSSCCCCC-G--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEE
T ss_pred CCCcCEEEccCCccCCC-h--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcccee
Confidence 35799999999998863 4 68899999999999999998888889999999999999999996555 8899999999
Q ss_pred EccCcccc
Q 041065 131 HIQLNRLD 138 (148)
Q Consensus 131 ~l~~N~l~ 138 (148)
++++|.|+
T Consensus 339 ~l~~N~i~ 346 (347)
T 4fmz_A 339 DFANQVIK 346 (347)
T ss_dssp SSSCC---
T ss_pred ehhhhccc
Confidence 99999986
No 112
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.04 E-value=6.9e-10 Score=81.57 Aligned_cols=79 Identities=23% Similarity=0.333 Sum_probs=34.9
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
+++.|++++|.+.+ ++ .+..+++|++|++++|.+++. +.+..+++|++|++++|++++. +. +..+++|+.|++
T Consensus 113 ~L~~L~L~~n~i~~-~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L 185 (291)
T 1h6t_A 113 KLKSLSLEHNGISD-IN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYL 185 (291)
T ss_dssp TCCEEECTTSCCCC-CG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCC-Ch--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc-hh-hcCCCccCEEEC
Confidence 34444444444442 12 344444444444444444432 2344444444444444444422 22 444444444444
Q ss_pred cCcccc
Q 041065 133 QLNRLD 138 (148)
Q Consensus 133 ~~N~l~ 138 (148)
++|+++
T Consensus 186 ~~N~i~ 191 (291)
T 1h6t_A 186 SKNHIS 191 (291)
T ss_dssp CSSCCC
T ss_pred CCCcCC
Confidence 444444
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.02 E-value=6.4e-10 Score=80.66 Aligned_cols=80 Identities=25% Similarity=0.350 Sum_probs=46.1
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.+++ ++. +.. ++|++|++++|.+++ + +.+..+++|++|++++|++++ ++ .+..+++|+.|+
T Consensus 85 ~~L~~L~L~~N~l~~-l~~--~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~ 156 (263)
T 1xeu_A 85 TKLEELSVNRNRLKN-LNG--IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLD 156 (263)
T ss_dssp SSCCEEECCSSCCSC-CTT--CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEE
T ss_pred CCCCEEECCCCccCC-cCc--ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEE
Confidence 457777777777664 332 222 566666666666653 2 235566666666666666653 33 455566666666
Q ss_pred ccCccccc
Q 041065 132 IQLNRLDG 139 (148)
Q Consensus 132 l~~N~l~g 139 (148)
+++|++++
T Consensus 157 L~~N~i~~ 164 (263)
T 1xeu_A 157 LHGNEITN 164 (263)
T ss_dssp CTTSCCCB
T ss_pred CCCCcCcc
Confidence 66666553
No 114
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.01 E-value=5.5e-10 Score=86.83 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=41.4
Q ss_pred eEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEcc
Q 041065 54 VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQ 133 (148)
Q Consensus 54 l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~ 133 (148)
++.|++++|.+.+..+ +..+++|+.|++++|.+++. +.+..+++|++|++++|++++..| +..+++|+.|+++
T Consensus 311 L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 311 LTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 383 (466)
T ss_dssp CSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECC
T ss_pred CCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEecc
Confidence 4444444444443221 34445555555555555432 245555666666666666665444 5566666666666
Q ss_pred Cccccc
Q 041065 134 LNRLDG 139 (148)
Q Consensus 134 ~N~l~g 139 (148)
+|.+++
T Consensus 384 ~n~~~~ 389 (466)
T 1o6v_A 384 DQAWTN 389 (466)
T ss_dssp CEEEEC
T ss_pred CCcccC
Confidence 666654
No 115
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.00 E-value=1e-09 Score=81.23 Aligned_cols=80 Identities=24% Similarity=0.422 Sum_probs=38.1
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.+.+ ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++. +..+++|++|+
T Consensus 85 ~~L~~L~L~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~ 157 (308)
T 1h6u_A 85 TKITELELSGNPLKN-VS--AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLS 157 (308)
T ss_dssp CSCCEEECCSCCCSC-CG--GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEE
T ss_pred CCCCEEEccCCcCCC-ch--hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEE
Confidence 456666666666553 22 34555555555555555543 221 4444455555555544442 222 44444444444
Q ss_pred ccCcccc
Q 041065 132 IQLNRLD 138 (148)
Q Consensus 132 l~~N~l~ 138 (148)
+++|+++
T Consensus 158 l~~n~l~ 164 (308)
T 1h6u_A 158 IGNAQVS 164 (308)
T ss_dssp CCSSCCC
T ss_pred ccCCcCC
Confidence 4444444
No 116
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.99 E-value=1.6e-09 Score=84.48 Aligned_cols=78 Identities=18% Similarity=0.240 Sum_probs=56.4
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.+++. .+..+++|++|++++|.+++. + ++++++|++|++++|++++ +| ++.+++|++|+
T Consensus 64 ~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL----DLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLN 133 (457)
T ss_dssp TTCSEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCeE----ccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEE
Confidence 4677777777777652 266777777777777777753 3 6777778888888887775 44 67777888888
Q ss_pred ccCccccc
Q 041065 132 IQLNRLDG 139 (148)
Q Consensus 132 l~~N~l~g 139 (148)
+++|++++
T Consensus 134 l~~N~l~~ 141 (457)
T 3bz5_A 134 CARNTLTE 141 (457)
T ss_dssp CTTSCCSC
T ss_pred CCCCccce
Confidence 88887775
No 117
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.99 E-value=1e-09 Score=88.44 Aligned_cols=13 Identities=8% Similarity=0.036 Sum_probs=5.9
Q ss_pred CeEEEEcCCCCcc
Q 041065 53 RVINISLPNRGVN 65 (148)
Q Consensus 53 ~l~~L~l~~n~l~ 65 (148)
+++.|+|++|.+.
T Consensus 88 ~L~~L~Ls~N~l~ 100 (605)
T 1m9s_A 88 NLGWLFLDENKIK 100 (605)
T ss_dssp TCCEEECCSSCCC
T ss_pred CCCEEECcCCCCC
Confidence 3444444444443
No 118
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.98 E-value=2.2e-09 Score=83.57 Aligned_cols=81 Identities=21% Similarity=0.282 Sum_probs=50.6
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
++++|++++|.+++ +| .+..+++|++|++++|.+++ +|..+ .+|++|++++|++++ +| .++.+++|++|++
T Consensus 132 ~L~~L~L~~n~l~~-lp--~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP--ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCEEECcCCCCCC-Cc--ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 45666666666654 44 36666777777777776664 44332 366666666666664 55 4667777777777
Q ss_pred cCccccccCCC
Q 041065 133 QLNRLDGSWRM 143 (148)
Q Consensus 133 ~~N~l~g~iP~ 143 (148)
++|++++ +|.
T Consensus 203 ~~N~l~~-l~~ 212 (454)
T 1jl5_A 203 DNNSLKK-LPD 212 (454)
T ss_dssp CSSCCSS-CCC
T ss_pred CCCcCCc-CCC
Confidence 7777764 443
No 119
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.98 E-value=1e-09 Score=81.20 Aligned_cols=79 Identities=22% Similarity=0.411 Sum_probs=33.6
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
+++.|++++|.+.+ ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|++++ ++. +..+++|+.|++
T Consensus 108 ~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 108 SIKTLDLTSTQITD-VT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKA 180 (308)
T ss_dssp TCCEEECTTSCCCC-CG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEEC
Confidence 45555555555543 22 24444444444444444442211 3344444444444444442 222 333444444444
Q ss_pred cCcccc
Q 041065 133 QLNRLD 138 (148)
Q Consensus 133 ~~N~l~ 138 (148)
++|+++
T Consensus 181 ~~n~l~ 186 (308)
T 1h6u_A 181 DDNKIS 186 (308)
T ss_dssp CSSCCC
T ss_pred CCCccC
Confidence 444333
No 120
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.97 E-value=5e-10 Score=90.49 Aligned_cols=82 Identities=17% Similarity=0.124 Sum_probs=61.6
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
+++.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|++|++++|+++ .+|..+..+++|+.|+|
T Consensus 222 ~L~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP----VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCEEEccCCccCc-CC----CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 45666666666553 33 24467778888888777 4565 5678889999999998 78888889999999999
Q ss_pred cCccccccCCCC
Q 041065 133 QLNRLDGSWRMC 144 (148)
Q Consensus 133 ~~N~l~g~iP~~ 144 (148)
++|+++|.+|..
T Consensus 292 ~~N~l~~~~~~~ 303 (622)
T 3g06_A 292 EGNPLSERTLQA 303 (622)
T ss_dssp CSCCCCHHHHHH
T ss_pred cCCCCCCcCHHH
Confidence 999988877653
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.97 E-value=1.5e-09 Score=78.64 Aligned_cols=82 Identities=18% Similarity=0.296 Sum_probs=65.2
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.+++. + .+..+++|++|++++|.+++ +|. +.. ++|++|++++|++++ ++ .+..+++|+.|+
T Consensus 63 ~~L~~L~L~~N~i~~~-~--~l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~ 134 (263)
T 1xeu_A 63 TNLKELHLSHNQISDL-S--PLKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILS 134 (263)
T ss_dssp TTCCEEECCSSCCCCC-G--GGTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEE
T ss_pred CCCCEEECCCCccCCC-h--hhccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEE
Confidence 5788999999988753 3 27888999999999999885 443 333 889999999999985 44 588999999999
Q ss_pred ccCccccccCC
Q 041065 132 IQLNRLDGSWR 142 (148)
Q Consensus 132 l~~N~l~g~iP 142 (148)
+++|++++ +|
T Consensus 135 Ls~N~i~~-~~ 144 (263)
T 1xeu_A 135 IRNNKLKS-IV 144 (263)
T ss_dssp CTTSCCCB-CG
T ss_pred CCCCcCCC-Ch
Confidence 99999984 44
No 122
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.96 E-value=3e-09 Score=82.85 Aligned_cols=78 Identities=18% Similarity=0.194 Sum_probs=48.3
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
+++.|++++|.+++ +| +..+++|+.|++++|.+++. .+..+++|++|++++|++++ +| ++.+++|+.|++
T Consensus 171 ~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l 240 (457)
T 3bz5_A 171 QLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDC 240 (457)
T ss_dssp TCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEEC
T ss_pred cCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEe
Confidence 45556666665554 22 45566666666666666543 25666677777777777764 55 666677777777
Q ss_pred cCcccccc
Q 041065 133 QLNRLDGS 140 (148)
Q Consensus 133 ~~N~l~g~ 140 (148)
++|++++.
T Consensus 241 ~~N~l~~~ 248 (457)
T 3bz5_A 241 SVNPLTEL 248 (457)
T ss_dssp CSSCCSCC
T ss_pred eCCcCCCc
Confidence 77777653
No 123
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.96 E-value=1.8e-09 Score=86.94 Aligned_cols=80 Identities=24% Similarity=0.375 Sum_probs=39.1
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|+|++|.+.+ ++ .+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+
T Consensus 109 ~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 181 (605)
T 1m9s_A 109 KKLKSLSLEHNGISD-IN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 181 (605)
T ss_dssp TTCCEEECTTSCCCC-CG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred CCCCEEEecCCCCCC-Cc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEE
Confidence 345666666666553 22 344555555555555555432 334445555555555555543322 44444444444
Q ss_pred ccCcccc
Q 041065 132 IQLNRLD 138 (148)
Q Consensus 132 l~~N~l~ 138 (148)
|++|+++
T Consensus 182 Ls~N~i~ 188 (605)
T 1m9s_A 182 LSKNHIS 188 (605)
T ss_dssp CCSSCCC
T ss_pred CcCCCCC
Confidence 4444444
No 124
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.95 E-value=1.3e-09 Score=84.65 Aligned_cols=83 Identities=19% Similarity=0.338 Sum_probs=54.5
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
+++.|++++|.+.+. + .+..+++|+.|++++|.+++..| +..+++|++|++++|.+++. ..+..+++|+.|++
T Consensus 288 ~L~~L~L~~n~l~~~-~--~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l 360 (466)
T 1o6v_A 288 ALTNLELNENQLEDI-S--PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSA 360 (466)
T ss_dssp TCSEEECCSSCCSCC-G--GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred ccCeEEcCCCcccCc-h--hhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeC
Confidence 455555555555432 2 25566667777777777665444 56677777777777777743 35777788888888
Q ss_pred cCccccccCC
Q 041065 133 QLNRLDGSWR 142 (148)
Q Consensus 133 ~~N~l~g~iP 142 (148)
++|++++.+|
T Consensus 361 ~~n~l~~~~~ 370 (466)
T 1o6v_A 361 GHNQISDLTP 370 (466)
T ss_dssp CSSCCCBCGG
T ss_pred CCCccCccch
Confidence 8888887665
No 125
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.94 E-value=5e-10 Score=90.44 Aligned_cols=94 Identities=24% Similarity=0.316 Sum_probs=44.8
Q ss_pred CCCcCCCCCcccccee--------eCCCCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCC
Q 041065 32 SSCINDATNVSSKTSP--------CNDAGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNL 103 (148)
Q Consensus 32 ~~W~~~~~~c~~~gv~--------c~~~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L 103 (148)
..|....++|.|.|.. |. ...++.|++++|+++ .+|. .+. ++|++|++++|.++ .+|. .+++|
T Consensus 13 ~~W~~~~~~~~~~~r~~~~~~~~~c~-~~~l~~L~ls~n~L~-~lp~-~l~--~~L~~L~L~~N~l~-~lp~---~l~~L 83 (622)
T 3g06_A 13 SAWRRAAPAEESRGRAAVVQKMRACL-NNGNAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLT-SLPA---LPPEL 83 (622)
T ss_dssp HHHHHTCCGGGHHHHHHHHHHHHHHH-HHCCCEEECCSSCCS-CCCS-CCC--TTCSEEEECSCCCS-CCCC---CCTTC
T ss_pred HHHHhcCCcchhccccccCccccccc-CCCCcEEEecCCCcC-ccCh-hhC--CCCcEEEecCCCCC-CCCC---cCCCC
Confidence 3465555667775432 21 123556666666655 4443 232 45555555555554 3333 33445
Q ss_pred ceeecCCCcccccCCccccCCCCCcEEEccCcccc
Q 041065 104 RYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLD 138 (148)
Q Consensus 104 ~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~ 138 (148)
++|+|++|+++ .+|. .+++|++|++++|+++
T Consensus 84 ~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 84 RTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp CEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred CEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence 55555555554 3433 3334444444444443
No 126
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.94 E-value=2.9e-10 Score=84.37 Aligned_cols=84 Identities=18% Similarity=0.102 Sum_probs=49.4
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccC-CCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGT-IPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~-~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.++.+++++|.+.+..+ .+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..|..++.+++|++|+
T Consensus 71 ~l~~L~l~~n~l~~~~~--~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLA--EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TCSEEECTTCEECSCCC--SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred cceEEEcCCccccccch--hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 45555666665554443 244566666666666666544 555556666666666666666655555566666666666
Q ss_pred ccCc-ccc
Q 041065 132 IQLN-RLD 138 (148)
Q Consensus 132 l~~N-~l~ 138 (148)
+++| .++
T Consensus 149 L~~~~~l~ 156 (336)
T 2ast_B 149 LSGCSGFS 156 (336)
T ss_dssp CTTCBSCC
T ss_pred CCCCCCCC
Confidence 6666 444
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.94 E-value=9.1e-11 Score=89.07 Aligned_cols=86 Identities=16% Similarity=0.167 Sum_probs=37.8
Q ss_pred CeEEEEcCCCCcc----ceecCCCCCCCCCCcEEEcccCccccC----CCccc--cCCCCCceeecCCCcccc----cCC
Q 041065 53 RVINISLPNRGVN----GTLHDFSFSSFPHLAYLDLTWNGFFGT----IPPQI--SNLSNLRYIYLGSNQFFG----NIP 118 (148)
Q Consensus 53 ~l~~L~l~~n~l~----~~~p~~~~~~l~~L~~L~ls~n~l~g~----~p~~~--~~l~~L~~L~ls~n~l~g----~~p 118 (148)
+++.|+|++|.++ ..++. .+..+++|++|+|++|.+++. ++..+ +.+++|++|+|++|.+++ .+|
T Consensus 217 ~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~ 295 (386)
T 2ca6_A 217 ELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295 (386)
T ss_dssp TCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred CccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence 3444444444443 23332 344444444444444444432 23333 224445555555555543 244
Q ss_pred ccc-cCCCCCcEEEccCccccc
Q 041065 119 AEV-GLLSHLEVLHIQLNRLDG 139 (148)
Q Consensus 119 ~~~-~~l~~L~~L~l~~N~l~g 139 (148)
..+ .++++|++|++++|++++
T Consensus 296 ~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 296 TVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHhcCCCceEEEccCCcCCc
Confidence 433 334455555555555443
No 128
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.92 E-value=1.2e-10 Score=86.55 Aligned_cols=87 Identities=22% Similarity=0.206 Sum_probs=65.8
Q ss_pred CCeEEEEcCCCCccce-ecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCC-ccccc-CCccccCCCCCc
Q 041065 52 GRVINISLPNRGVNGT-LHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSN-QFFGN-IPAEVGLLSHLE 128 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~-~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n-~l~g~-~p~~~~~l~~L~ 128 (148)
.++++|++++|.+.+. ++. .+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|+
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp BCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 4688888888887654 554 5777888888888888887777777778888888888888 56652 566677778888
Q ss_pred EEEccCc-cccc
Q 041065 129 VLHIQLN-RLDG 139 (148)
Q Consensus 129 ~L~l~~N-~l~g 139 (148)
+|++++| .+++
T Consensus 172 ~L~l~~~~~l~~ 183 (336)
T 2ast_B 172 ELNLSWCFDFTE 183 (336)
T ss_dssp EEECCCCTTCCH
T ss_pred EEcCCCCCCcCh
Confidence 8888887 7664
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.90 E-value=7.2e-12 Score=87.12 Aligned_cols=65 Identities=25% Similarity=0.342 Sum_probs=35.2
Q ss_pred CCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCC--ccccCCCCCcEEEccCccccccCCC
Q 041065 76 FPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIP--AEVGLLSHLEVLHIQLNRLDGSWRM 143 (148)
Q Consensus 76 l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p--~~~~~l~~L~~L~l~~N~l~g~iP~ 143 (148)
+++|++|++++|.+++ +| .+..+++|++|++++|++++ ++ ..+..+++|++|++++|++++.+|.
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 3444444554444443 22 34445555666666666552 22 2466666777777777776655443
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.88 E-value=1.3e-10 Score=87.60 Aligned_cols=86 Identities=16% Similarity=0.193 Sum_probs=60.3
Q ss_pred CeEEEEcCCCCccceecCCCCCCC-----CCCcEEEcccCccccCCCccc----cCC-CCCceeecCCCcccccCCccc-
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSF-----PHLAYLDLTWNGFFGTIPPQI----SNL-SNLRYIYLGSNQFFGNIPAEV- 121 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l-----~~L~~L~ls~n~l~g~~p~~~----~~l-~~L~~L~ls~n~l~g~~p~~~- 121 (148)
++++|++++|.+.+..+. .+..+ ++|++|++++|.+++..+..+ ..+ ++|++|++++|++++..+..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 130 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSD-ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK 130 (362)
T ss_dssp TCCEEECCSSCGGGSCHH-HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred ceeEEECcCCCCCHHHHH-HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH
Confidence 688888888888765443 44443 788888888888876665543 333 788888888888876554443
Q ss_pred ---cC-CCCCcEEEccCccccc
Q 041065 122 ---GL-LSHLEVLHIQLNRLDG 139 (148)
Q Consensus 122 ---~~-l~~L~~L~l~~N~l~g 139 (148)
.. .++|++|++++|+++.
T Consensus 131 ~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 131 QAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHTTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCceeEEEccCCcCCH
Confidence 33 2588888888888874
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.87 E-value=1.8e-11 Score=85.08 Aligned_cols=82 Identities=20% Similarity=0.263 Sum_probs=72.3
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 131 (148)
.+++.|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|++|+
T Consensus 48 ~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 48 KACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY 121 (198)
T ss_dssp TTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred CCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence 579999999999886 55 6888999999999999998 688877788999999999999995 56 688889999999
Q ss_pred ccCccccc
Q 041065 132 IQLNRLDG 139 (148)
Q Consensus 132 l~~N~l~g 139 (148)
+++|++++
T Consensus 122 l~~N~i~~ 129 (198)
T 1ds9_A 122 MSNNKITN 129 (198)
T ss_dssp ESEEECCC
T ss_pred CCCCcCCc
Confidence 99999883
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.86 E-value=4.1e-10 Score=85.43 Aligned_cols=87 Identities=20% Similarity=0.248 Sum_probs=62.5
Q ss_pred CCeEEEEcCCCCcc--c---eecCCCCCCCCCCcEEEcccCccc----cCCCccccCCCCCceeecCCCccccc----CC
Q 041065 52 GRVINISLPNRGVN--G---TLHDFSFSSFPHLAYLDLTWNGFF----GTIPPQISNLSNLRYIYLGSNQFFGN----IP 118 (148)
Q Consensus 52 ~~l~~L~l~~n~l~--~---~~p~~~~~~l~~L~~L~ls~n~l~----g~~p~~~~~l~~L~~L~ls~n~l~g~----~p 118 (148)
.+++.|++++|.+. + .++. .+..+++|++|+|++|.++ +.+|..+..+++|++|+|++|.+++. +|
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~-~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLE-GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHT-TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHH-HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 35777777777766 2 2332 5667788888888888875 55677777788888888888888754 45
Q ss_pred ccc--cCCCCCcEEEccCccccc
Q 041065 119 AEV--GLLSHLEVLHIQLNRLDG 139 (148)
Q Consensus 119 ~~~--~~l~~L~~L~l~~N~l~g 139 (148)
..+ +.+++|++|+|++|.+++
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHhhccCCCeEEEECcCCcCCH
Confidence 555 347888888888888876
No 133
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.81 E-value=4.5e-09 Score=76.67 Aligned_cols=67 Identities=24% Similarity=0.398 Sum_probs=51.5
Q ss_pred CCCCCcEEEcccCcccc--CCCccccCCCCCceeecCCCcccccCCccccCCC--CCcEEEccCccccccCCC
Q 041065 75 SFPHLAYLDLTWNGFFG--TIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLS--HLEVLHIQLNRLDGSWRM 143 (148)
Q Consensus 75 ~l~~L~~L~ls~n~l~g--~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~--~L~~L~l~~N~l~g~iP~ 143 (148)
.++.|+.|+|++|.+++ .+|..+..+++|+.|+|++|++++. ..+..+. +|+.|+|++|.+.+.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence 46788899999998887 4556677888899999999988854 3344444 888999999988877663
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.80 E-value=7.8e-10 Score=83.39 Aligned_cols=90 Identities=16% Similarity=0.202 Sum_probs=73.6
Q ss_pred CCeEEEEcCCCCccceec----CCCCCCCC-CCcEEEcccCccccCCCccccCC-----CCCceeecCCCcccccCCccc
Q 041065 52 GRVINISLPNRGVNGTLH----DFSFSSFP-HLAYLDLTWNGFFGTIPPQISNL-----SNLRYIYLGSNQFFGNIPAEV 121 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p----~~~~~~l~-~L~~L~ls~n~l~g~~p~~~~~l-----~~L~~L~ls~n~l~g~~p~~~ 121 (148)
.+++.|++++|.+++..+ . .+..++ +|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQ-AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHH-HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHH-HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 459999999999986544 3 567788 89999999999998777777664 899999999999997766644
Q ss_pred ----cCC-CCCcEEEccCccccccCC
Q 041065 122 ----GLL-SHLEVLHIQLNRLDGSWR 142 (148)
Q Consensus 122 ----~~l-~~L~~L~l~~N~l~g~iP 142 (148)
..+ ++|++|++++|++++..+
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSS 126 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHH
Confidence 444 899999999999985443
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.68 E-value=1.3e-09 Score=84.04 Aligned_cols=87 Identities=14% Similarity=0.130 Sum_probs=56.9
Q ss_pred CeEEEEcCCCCccce----ecCCCCCCCCCCcEEEcccCccccCCCccccC-----CCCCceeecCCCcccc----cCCc
Q 041065 53 RVINISLPNRGVNGT----LHDFSFSSFPHLAYLDLTWNGFFGTIPPQISN-----LSNLRYIYLGSNQFFG----NIPA 119 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~-----l~~L~~L~ls~n~l~g----~~p~ 119 (148)
+++.|++++|.+++. ++. .+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .+|.
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 392 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSS-VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHH-HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHH-HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence 455555555555432 232 3445677778888888776544443332 5678888888888875 6677
Q ss_pred cccCCCCCcEEEccCcccccc
Q 041065 120 EVGLLSHLEVLHIQLNRLDGS 140 (148)
Q Consensus 120 ~~~~l~~L~~L~l~~N~l~g~ 140 (148)
.+..+++|++|++++|++++.
T Consensus 393 ~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 393 TLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHCCCCCEEECCSSSCCHH
T ss_pred HHHhCCCccEEECCCCCCCHH
Confidence 777778888888888877643
No 136
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.66 E-value=1.2e-08 Score=74.49 Aligned_cols=77 Identities=16% Similarity=0.270 Sum_probs=62.8
Q ss_pred CCeEEEEcCCCCccc--eecCCCCCCCCCCcEEEcccCccccCCCccccCCC--CCceeecCCCcccccCCc-------c
Q 041065 52 GRVINISLPNRGVNG--TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLS--NLRYIYLGSNQFFGNIPA-------E 120 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~--~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~--~L~~L~ls~n~l~g~~p~-------~ 120 (148)
.+++.|+|++|.+++ .++. .+..+++|+.|+|++|.+++. ..+..+. +|++|+|++|.+++.+|. .
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 579999999999987 4454 566899999999999999865 3344444 999999999999987773 3
Q ss_pred ccCCCCCcEEE
Q 041065 121 VGLLSHLEVLH 131 (148)
Q Consensus 121 ~~~l~~L~~L~ 131 (148)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 67789999886
No 137
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.58 E-value=1.1e-07 Score=71.28 Aligned_cols=65 Identities=22% Similarity=0.283 Sum_probs=51.1
Q ss_pred CCCeEEEEcCCCCccceecCCCCCCCCCCcE-EEcccCccccCCCccccCCCCCceeecCCCcccc
Q 041065 51 AGRVINISLPNRGVNGTLHDFSFSSFPHLAY-LDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFG 115 (148)
Q Consensus 51 ~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~-L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g 115 (148)
..+++.|+|++|.+.+.++...|.++++++. +.+..|+++...|..|..+++|++|++++|++++
T Consensus 53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccccccc
Confidence 3579999999999877777656778888765 5666788886667778888889999888888874
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.52 E-value=1.3e-08 Score=78.51 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=51.9
Q ss_pred CeEEEEcCCCCccc----eecCCCCCCCCCCcEEEcccCccccCCCcccc-----CCCCCceeecCCCccccc----CCc
Q 041065 53 RVINISLPNRGVNG----TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQIS-----NLSNLRYIYLGSNQFFGN----IPA 119 (148)
Q Consensus 53 ~l~~L~l~~n~l~~----~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~-----~l~~L~~L~ls~n~l~g~----~p~ 119 (148)
++++|++++|.++. .++. .+..+++|++|++++|.+++..+..+. ..++|++|++++|++++. ++.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 47777777777663 3454 566777777777777776543332221 234567777777666642 244
Q ss_pred cccCCCCCcEEEccCccccc
Q 041065 120 EVGLLSHLEVLHIQLNRLDG 139 (148)
Q Consensus 120 ~~~~l~~L~~L~l~~N~l~g 139 (148)
.+..+++|++|++++|.++.
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHH
T ss_pred HHhhCCCCCEEECcCCCcch
Confidence 45555666777776666553
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.43 E-value=7.3e-07 Score=66.23 Aligned_cols=88 Identities=14% Similarity=0.113 Sum_probs=73.3
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCc-eeecCCCcccccCCccccCCCCCcEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLR-YIYLGSNQFFGNIPAEVGLLSHLEVL 130 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~-~L~ls~n~l~g~~p~~~~~l~~L~~L 130 (148)
..++.+++++|.++ .++...|.++.+|+.+++..| +...-+..|.++++|+ .+++.+ .++..-+..|.++++|+.+
T Consensus 226 ~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 226 PNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp TTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred CCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 47999999999887 566558999999999999998 6644456689999999 999998 6764445789999999999
Q ss_pred EccCccccccCCC
Q 041065 131 HIQLNRLDGSWRM 143 (148)
Q Consensus 131 ~l~~N~l~g~iP~ 143 (148)
++++|+++ .|++
T Consensus 303 ~l~~n~i~-~I~~ 314 (329)
T 3sb4_A 303 LATGDKIT-TLGD 314 (329)
T ss_dssp EECSSCCC-EECT
T ss_pred EeCCCccC-ccch
Confidence 99999988 6665
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.42 E-value=2.5e-08 Score=75.80 Aligned_cols=64 Identities=19% Similarity=0.225 Sum_probs=29.8
Q ss_pred CCCCCcEEEcccCccccC----CCccccCCCCCceeecCCCcccc----cCCccccCCCCCcEEEccCcccc
Q 041065 75 SFPHLAYLDLTWNGFFGT----IPPQISNLSNLRYIYLGSNQFFG----NIPAEVGLLSHLEVLHIQLNRLD 138 (148)
Q Consensus 75 ~l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~ls~n~l~g----~~p~~~~~l~~L~~L~l~~N~l~ 138 (148)
..++|++|+|++|.++.. ++..+...++|++|+|++|.++. .+...+...++|++|+|++|.|+
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 344555555555555421 12333444455555555555542 12222333455555555555554
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.32 E-value=1.4e-07 Score=71.78 Aligned_cols=63 Identities=13% Similarity=0.128 Sum_probs=39.8
Q ss_pred CCCCcEEEcccCccccC----CCccccCCCCCceeecCCCccccc----CCccccCCCCCcEEEccCcccc
Q 041065 76 FPHLAYLDLTWNGFFGT----IPPQISNLSNLRYIYLGSNQFFGN----IPAEVGLLSHLEVLHIQLNRLD 138 (148)
Q Consensus 76 l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~l~~N~l~ 138 (148)
.+.|++|+|++|.++.. ++..+...++|++|+|++|.+++. ++..+...++|+.|+|++|.++
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 45677777777776532 333345667777777777777532 2444556667777777777765
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.15 E-value=1.3e-07 Score=74.96 Aligned_cols=66 Identities=21% Similarity=0.184 Sum_probs=49.1
Q ss_pred CCCCCcEEEcccCccccC-CCccccCCCCCceeecCCCccccc-CCccccCCCCCcEEEccCcccccc
Q 041065 75 SFPHLAYLDLTWNGFFGT-IPPQISNLSNLRYIYLGSNQFFGN-IPAEVGLLSHLEVLHIQLNRLDGS 140 (148)
Q Consensus 75 ~l~~L~~L~ls~n~l~g~-~p~~~~~l~~L~~L~ls~n~l~g~-~p~~~~~l~~L~~L~l~~N~l~g~ 140 (148)
.+++|++|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|+++..
T Consensus 461 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 461 YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 367788888888888753 344556788889999998888754 344456788899999998887754
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.13 E-value=4.7e-07 Score=62.24 Aligned_cols=86 Identities=15% Similarity=0.116 Sum_probs=48.6
Q ss_pred CCeEEEEcCCCCccce----ecCCCCCCCCCCcEEEcccCccccC----CCccccCCCCCceeec--CCCccccc----C
Q 041065 52 GRVINISLPNRGVNGT----LHDFSFSSFPHLAYLDLTWNGFFGT----IPPQISNLSNLRYIYL--GSNQFFGN----I 117 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~l--s~n~l~g~----~ 117 (148)
..+++|+|++|.+... +.. .+...+.|++|+|++|.+... +...+...++|++|+| ++|.+... +
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~-~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l 143 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAE-MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI 143 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHH-HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHH-HHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence 3566677777766421 111 233445677777777766532 3344555566777777 66766532 2
Q ss_pred CccccCCCCCcEEEccCcccc
Q 041065 118 PAEVGLLSHLEVLHIQLNRLD 138 (148)
Q Consensus 118 p~~~~~l~~L~~L~l~~N~l~ 138 (148)
...+...++|+.|+|++|.+.
T Consensus 144 ~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 144 ANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCcCEEeccCCCCC
Confidence 233444466777777777654
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.04 E-value=4.8e-07 Score=62.16 Aligned_cols=88 Identities=13% Similarity=0.108 Sum_probs=67.6
Q ss_pred CCCeEEEEcCCC-Cccce----ecCCCCCCCCCCcEEEcccCccccC----CCccccCCCCCceeecCCCccccc----C
Q 041065 51 AGRVINISLPNR-GVNGT----LHDFSFSSFPHLAYLDLTWNGFFGT----IPPQISNLSNLRYIYLGSNQFFGN----I 117 (148)
Q Consensus 51 ~~~l~~L~l~~n-~l~~~----~p~~~~~~l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~ls~n~l~g~----~ 117 (148)
...+++|+|++| .+... +.. .+...++|++|+|++|.+... +...+...++|++|+|++|.++.. +
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~-~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHH-HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 467999999999 87632 222 456678999999999999643 334455668899999999999753 4
Q ss_pred CccccCCCCCcEEEc--cCccccc
Q 041065 118 PAEVGLLSHLEVLHI--QLNRLDG 139 (148)
Q Consensus 118 p~~~~~l~~L~~L~l--~~N~l~g 139 (148)
...+...++|++|+| ++|.+..
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHhCCCceEEEecCCCCCCCH
Confidence 556777789999999 8898863
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.03 E-value=1.3e-06 Score=59.83 Aligned_cols=84 Identities=10% Similarity=0.002 Sum_probs=63.6
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCc-cccCCCccccCC----CCCceeecCCCc-ccccCCccccCCC
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNG-FFGTIPPQISNL----SNLRYIYLGSNQ-FFGNIPAEVGLLS 125 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~-l~g~~p~~~~~l----~~L~~L~ls~n~-l~g~~p~~~~~l~ 125 (148)
-.+++|+++++.++..--. .+..+++|+.|+|+++. ++..--..+..+ ++|++|+|++|. ++..--..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 4699999999998743222 57889999999999995 665433445554 479999999984 7643334577899
Q ss_pred CCcEEEccCcc
Q 041065 126 HLEVLHIQLNR 136 (148)
Q Consensus 126 ~L~~L~l~~N~ 136 (148)
+|+.|++++..
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 99999999864
No 146
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.97 E-value=8.9e-07 Score=70.16 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=14.5
Q ss_pred CCCCCceeecCCCcccccCCccccCCCCCcEEEcc
Q 041065 99 NLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQ 133 (148)
Q Consensus 99 ~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~ 133 (148)
++++|++|++++|.+.+ +|..+..+++|+.|+++
T Consensus 218 ~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEEC
T ss_pred hCCCCcEEeccCccHHH-HHHHHhhhhHHHhhccc
Confidence 34444444444444442 33333444444444443
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.90 E-value=6e-07 Score=71.12 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=39.8
Q ss_pred CCCCcEEEcccCccccCCCccc-cCCCCCceeecCCCcccccCCc-cccCCCCCcEEEccCcccc
Q 041065 76 FPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPA-EVGLLSHLEVLHIQLNRLD 138 (148)
Q Consensus 76 l~~L~~L~ls~n~l~g~~p~~~-~~l~~L~~L~ls~n~l~g~~p~-~~~~l~~L~~L~l~~N~l~ 138 (148)
+++|+.|++++|.+++..+..+ ..+++|++|++++|.+++.... .+..+++|+.|++++|+++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 5667777777777655444333 4567777777777777543332 3344677777777777664
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.78 E-value=3.5e-06 Score=66.67 Aligned_cols=84 Identities=18% Similarity=0.124 Sum_probs=43.7
Q ss_pred CCeEEEEcCCCCccceecCCCCC-CCCCCcEEEcccC-ccccC-CCccccCCCCCceeecCCCcccccCCcccc----CC
Q 041065 52 GRVINISLPNRGVNGTLHDFSFS-SFPHLAYLDLTWN-GFFGT-IPPQISNLSNLRYIYLGSNQFFGNIPAEVG----LL 124 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~-~l~~L~~L~ls~n-~l~g~-~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~----~l 124 (148)
.++++|+++++.+++..+. .+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+. .+
T Consensus 105 ~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp TTCCEEEEESCBCCHHHHH-HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 3566777777666544332 332 4566666666666 33322 222333566666666666665543332222 34
Q ss_pred CCCcEEEccCcc
Q 041065 125 SHLEVLHIQLNR 136 (148)
Q Consensus 125 ~~L~~L~l~~N~ 136 (148)
++|+.|++++|.
T Consensus 184 ~~L~~L~l~~~~ 195 (594)
T 2p1m_B 184 TSLVSLNISCLA 195 (594)
T ss_dssp CCCCEEECTTCC
T ss_pred CcCcEEEecccC
Confidence 456666665553
No 149
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.77 E-value=6.5e-05 Score=48.72 Aligned_cols=56 Identities=27% Similarity=0.305 Sum_probs=38.8
Q ss_pred EEEcCCCCcc-ceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCccc
Q 041065 56 NISLPNRGVN-GTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFF 114 (148)
Q Consensus 56 ~L~l~~n~l~-~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~ 114 (148)
.++.++++++ ..+|. .+ -++|++|+|++|.|+..-+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~-~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-AF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCS-CC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCC-CC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4566777765 24553 21 236888999999988444455778888899999888764
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.63 E-value=0.00012 Score=54.07 Aligned_cols=78 Identities=19% Similarity=0.174 Sum_probs=64.6
Q ss_pred CCeEEEEcCCCCccceecCCCCCCCCCCc-EEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065 52 GRVINISLPNRGVNGTLHDFSFSSFPHLA-YLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL 130 (148)
Q Consensus 52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~-~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L 130 (148)
.+++.|+++.| +. .++...|.++++|+ .+++.. .++..-+..|.++++|+.++++.|+++..-+..|.++++|+.+
T Consensus 250 ~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 250 KYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp TTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred CCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 47899999998 55 46655899999999 999998 6764455779999999999999999985545689999999988
Q ss_pred Ec
Q 041065 131 HI 132 (148)
Q Consensus 131 ~l 132 (148)
+.
T Consensus 327 y~ 328 (329)
T 3sb4_A 327 YK 328 (329)
T ss_dssp EC
T ss_pred cc
Confidence 63
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.39 E-value=2.2e-05 Score=59.43 Aligned_cols=63 Identities=17% Similarity=0.311 Sum_probs=28.9
Q ss_pred CCCCcEEEcccCccccCCCccc---cCCCCCceeecCCCccccc----CCccccCCCCCcEEEccCcccc
Q 041065 76 FPHLAYLDLTWNGFFGTIPPQI---SNLSNLRYIYLGSNQFFGN----IPAEVGLLSHLEVLHIQLNRLD 138 (148)
Q Consensus 76 l~~L~~L~ls~n~l~g~~p~~~---~~l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~l~~N~l~ 138 (148)
+++|++|+|.+|.+....+..+ ..+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 4455555555554442222111 1345555555555555432 2222334455555555555544
No 152
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.24 E-value=0.00077 Score=43.55 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=16.1
Q ss_pred CCceeecCCCcccccCCccccCCCCCcEEEccCcc
Q 041065 102 NLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNR 136 (148)
Q Consensus 102 ~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~ 136 (148)
+|++|+|++|+|+..-+..|..+++|+.|+|++|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 34555555555552212234444555555555553
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.98 E-value=0.0036 Score=47.84 Aligned_cols=83 Identities=7% Similarity=0.083 Sum_probs=44.3
Q ss_pred CeEEEEcCCCCcc----ceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCc
Q 041065 53 RVINISLPNRGVN----GTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLE 128 (148)
Q Consensus 53 ~l~~L~l~~n~l~----~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~ 128 (148)
.++.+.+.++.+. ..++...|.++++|+.+++. +.+.-.-...|.++++|+.+.+..| ++..-...|.++ +|+
T Consensus 272 ~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~ 348 (401)
T 4fdw_A 272 ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIK 348 (401)
T ss_dssp TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCC
T ss_pred CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCC
Confidence 3455555444332 12333355566666666665 2344222344666677777777544 442223456666 777
Q ss_pred EEEccCcccc
Q 041065 129 VLHIQLNRLD 138 (148)
Q Consensus 129 ~L~l~~N~l~ 138 (148)
.+++.+|.+.
T Consensus 349 ~l~l~~n~~~ 358 (401)
T 4fdw_A 349 EVKVEGTTPP 358 (401)
T ss_dssp EEEECCSSCC
T ss_pred EEEEcCCCCc
Confidence 7777777654
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.90 E-value=0.00018 Score=54.42 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=25.9
Q ss_pred CCCCCceeecCCCcccccCCccc---cCCCCCcEEEccCccccc
Q 041065 99 NLSNLRYIYLGSNQFFGNIPAEV---GLLSHLEVLHIQLNRLDG 139 (148)
Q Consensus 99 ~l~~L~~L~ls~n~l~g~~p~~~---~~l~~L~~L~l~~N~l~g 139 (148)
.+++|++|+|.+|.+.+..+..+ ..+++|++|+|+.|.+.+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 35677777777777654332222 245677888887777764
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.80 E-value=0.00057 Score=46.63 Aligned_cols=62 Identities=11% Similarity=0.025 Sum_probs=47.5
Q ss_pred CCCcEEEcccCccccCCCccccCCCCCceeecCCCc-ccccCCccccCC----CCCcEEEccCcc-cc
Q 041065 77 PHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQ-FFGNIPAEVGLL----SHLEVLHIQLNR-LD 138 (148)
Q Consensus 77 ~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~-l~g~~p~~~~~l----~~L~~L~l~~N~-l~ 138 (148)
..|+.||++++.++..--..+..+++|++|+|+++. ++..--..+..+ ++|++|+|+++. ++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 469999999999876555567899999999999985 664333345554 379999999874 54
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.44 E-value=0.009 Score=45.60 Aligned_cols=79 Identities=18% Similarity=0.154 Sum_probs=44.4
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
.++.+.+.. .+. .++...|.++++|+.++++.|.++ .++.......+|+.+.+..+ +...-...|.++++|+.+++
T Consensus 158 ~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 355566654 333 233336777777777777777766 34433223566666666643 44222335666666666666
Q ss_pred cCc
Q 041065 133 QLN 135 (148)
Q Consensus 133 ~~N 135 (148)
..|
T Consensus 234 ~~~ 236 (401)
T 4fdw_A 234 PEN 236 (401)
T ss_dssp CTT
T ss_pred CCC
Confidence 543
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.16 E-value=0.0012 Score=45.79 Aligned_cols=60 Identities=12% Similarity=0.071 Sum_probs=27.2
Q ss_pred CCCCCcEEEcccCccccCC----CccccCCCCCceeecCCCccccc----CCccccCCCCCcEEEccC
Q 041065 75 SFPHLAYLDLTWNGFFGTI----PPQISNLSNLRYIYLGSNQFFGN----IPAEVGLLSHLEVLHIQL 134 (148)
Q Consensus 75 ~l~~L~~L~ls~n~l~g~~----p~~~~~l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~l~~ 134 (148)
.=+.|+.|+|++|.+...- -..+..=+.|++|+|++|.+... +-..+..-+.|+.|+|++
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 3345566666666554221 11122234566666666655421 111233334455665553
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.16 E-value=0.0081 Score=41.62 Aligned_cols=66 Identities=12% Similarity=0.077 Sum_probs=47.3
Q ss_pred CCCCCCCcEEEcccC-ccccC----CCccccCCCCCceeecCCCccccc----CCccccCCCCCcEEEccCcccc
Q 041065 73 FSSFPHLAYLDLTWN-GFFGT----IPPQISNLSNLRYIYLGSNQFFGN----IPAEVGLLSHLEVLHIQLNRLD 138 (148)
Q Consensus 73 ~~~l~~L~~L~ls~n-~l~g~----~p~~~~~l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~l~~N~l~ 138 (148)
+..-+.|+.|+|++| .+... +-+.+..=+.|+.|+|++|.+... +-..+..-+.|++|+|+.|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 344567888999885 66422 334455568899999999999732 2233445578999999999987
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.13 E-value=0.066 Score=40.31 Aligned_cols=79 Identities=13% Similarity=0.088 Sum_probs=52.4
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
.++.+.+..+ +. .++...|.++.+|+.+++..+ ++-.-...|.++++|+.+.+..+ ++..-...|.++.+|+.+++
T Consensus 298 ~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 298 SLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp TCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred cccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence 4555555543 33 344446778888888888644 54223456788889999988776 55233457888889998888
Q ss_pred cCc
Q 041065 133 QLN 135 (148)
Q Consensus 133 ~~N 135 (148)
..+
T Consensus 374 p~~ 376 (394)
T 4fs7_A 374 PKR 376 (394)
T ss_dssp EGG
T ss_pred CCC
Confidence 654
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.13 E-value=0.12 Score=38.87 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=44.1
Q ss_pred ecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCC-ccccCCCCCcEEEccCcc
Q 041065 68 LHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIP-AEVGLLSHLEVLHIQLNR 136 (148)
Q Consensus 68 ~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p-~~~~~l~~L~~L~l~~N~ 136 (148)
++...|.++.+|+.+++..+ ++..-...|.++.+|+.+.+..+ ++ .|. ..|.++++|+.+++.++.
T Consensus 302 I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 302 LPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCH
T ss_pred cCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCce
Confidence 44446777778888887654 43222345777888888888654 54 343 467888888888887764
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.17 E-value=0.12 Score=38.43 Aligned_cols=61 Identities=11% Similarity=0.029 Sum_probs=38.0
Q ss_pred CCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCC-ccccCCCCCcEEEccC
Q 041065 72 SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIP-AEVGLLSHLEVLHIQL 134 (148)
Q Consensus 72 ~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p-~~~~~l~~L~~L~l~~ 134 (148)
.|.++.+|+.+.+..+.++..-...|.++.+|+.+.+..+ ++ .|. ..|.++++|+.+.+..
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECC
Confidence 5666777777777776665333345677777777777654 44 233 3566667777666643
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.81 E-value=0.24 Score=37.23 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=49.5
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
.++.+.+..+ ++ .+....|.++.+|+.+.+..+ ++-.-...|.++++|+.+++.++.... ..+....+|+.+.+
T Consensus 312 ~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 312 SLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPV 385 (394)
T ss_dssp TCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----
T ss_pred CcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEe
Confidence 5677777654 43 344447899999999999754 552234568999999999999886542 34667788998888
Q ss_pred cCcccc
Q 041065 133 QLNRLD 138 (148)
Q Consensus 133 ~~N~l~ 138 (148)
..|.+.
T Consensus 386 ~~~~~~ 391 (394)
T 4gt6_A 386 APGSID 391 (394)
T ss_dssp ------
T ss_pred CCCCEE
Confidence 766543
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.65 E-value=0.5 Score=35.05 Aligned_cols=80 Identities=15% Similarity=0.110 Sum_probs=51.5
Q ss_pred CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065 53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132 (148)
Q Consensus 53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l 132 (148)
.++.+.+..+ ++ .+....+.++..|+.+.+..+ +...-...|..+++|+.+.+.++.++..-...|.++.+|+.+.+
T Consensus 241 ~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 241 ALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp SCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred cceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 3445555443 22 233335667777887777544 33222345778899999999988887333457888899999998
Q ss_pred cCc
Q 041065 133 QLN 135 (148)
Q Consensus 133 ~~N 135 (148)
..+
T Consensus 318 p~~ 320 (379)
T 4h09_A 318 PTA 320 (379)
T ss_dssp CTT
T ss_pred Ccc
Confidence 654
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=90.61 E-value=0.76 Score=34.39 Aligned_cols=62 Identities=13% Similarity=-0.054 Sum_probs=42.4
Q ss_pred CCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCc
Q 041065 72 SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLN 135 (148)
Q Consensus 72 ~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N 135 (148)
.+..+.+|+.+.+..+ +...-...|.++++|+.+++..+ ++..-...|.++++|+.+.+..|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 4566777777777654 43222345778889999998754 55222456888899999988765
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=41.50 E-value=53 Score=19.45 Aligned_cols=40 Identities=13% Similarity=-0.047 Sum_probs=28.3
Q ss_pred CCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCC
Q 041065 71 FSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSN 111 (148)
Q Consensus 71 ~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n 111 (148)
..|.++..|+.+.+..+- +..-...|.++.+|+.+.+...
T Consensus 14 ~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred HHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 378888899988887652 2122345788888998887653
No 166
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=32.29 E-value=14 Score=15.45 Aligned_cols=9 Identities=11% Similarity=-0.127 Sum_probs=6.3
Q ss_pred CCcccccee
Q 041065 39 TNVSSKTSP 47 (148)
Q Consensus 39 ~~c~~~gv~ 47 (148)
..|+|+|..
T Consensus 6 gacswrgle 14 (23)
T 3ox7_P 6 GACSWRGLE 14 (26)
T ss_pred cccccccch
Confidence 368888864
Done!