Query 041066
Match_columns 329
No_of_seqs 433 out of 2260
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 05:12:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041066.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041066hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.7 5E-16 1.7E-20 138.5 19.3 182 3-194 181-409 (451)
2 3o7q_A L-fucose-proton symport 99.5 4E-13 1.4E-17 119.2 19.7 131 55-201 282-414 (438)
3 4gc0_A D-xylose-proton symport 99.5 2.9E-13 1E-17 122.0 15.5 132 55-194 301-432 (491)
4 4aps_A DI-OR tripeptide H+ sym 99.5 7.6E-13 2.6E-17 119.3 14.4 136 55-194 307-448 (491)
5 4aps_A DI-OR tripeptide H+ sym 99.5 5.1E-13 1.7E-17 120.5 13.2 126 61-200 49-177 (491)
6 1pw4_A Glycerol-3-phosphate tr 99.4 4E-13 1.4E-17 119.6 10.9 136 55-201 52-188 (451)
7 3o7q_A L-fucose-proton symport 99.4 5.2E-13 1.8E-17 118.5 11.3 129 55-193 50-178 (438)
8 2cfq_A Lactose permease; trans 99.4 5.5E-13 1.9E-17 117.8 7.1 117 65-194 258-375 (417)
9 2gfp_A EMRD, multidrug resista 99.4 1E-13 3.4E-18 120.6 1.0 181 2-194 149-352 (375)
10 2xut_A Proton/peptide symporte 99.3 1.6E-11 5.6E-16 111.5 11.9 127 56-194 38-174 (524)
11 2gfp_A EMRD, multidrug resista 99.3 1.6E-12 5.6E-17 113.0 3.9 127 55-194 24-150 (375)
12 4gc0_A D-xylose-proton symport 99.2 6.6E-11 2.3E-15 106.5 12.3 121 65-194 54-188 (491)
13 2xut_A Proton/peptide symporte 98.9 1.5E-09 5E-14 98.6 7.8 63 131-194 405-467 (524)
14 2cfq_A Lactose permease; trans 98.5 1.8E-08 6.1E-13 88.8 0.2 130 55-194 31-164 (417)
15 2g9p_A Antimicrobial peptide l 38.8 16 0.00054 16.6 1.3 13 85-97 2-14 (26)
16 2zxe_G FXYD10, phospholemman-l 24.6 92 0.0032 19.1 3.4 23 217-239 15-37 (74)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.71 E-value=5e-16 Score=138.47 Aligned_cols=182 Identities=14% Similarity=0.255 Sum_probs=125.4
Q ss_pred Ccc-hHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCcc-------------------------ccCCcchhHH-----
Q 041066 3 IPG-WRITFHLVGLISVIVGILVYLFAKD-TRCSDGKSRA-------------------------KDQKPHKAFC----- 50 (329)
Q Consensus 3 ~~g-Wr~~f~i~~~~~~~~~i~~~~~~~~-p~~~~~~~~~-------------------------~~~~~~~~~~----- 50 (329)
.+| ||++|++.+++.++..++.++.+|| |+.......+ ++..+++.++
T Consensus 181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (451)
T 1pw4_A 181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIA 260 (451)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHH
Confidence 356 9999999998888888777777777 3321110000 0112234444
Q ss_pred -HHH------H----HHHHHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhccCCchhHHHHHHHHHHHHHH
Q 041066 51 -FVI------F----AYVVRT-IGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTL--VKRLPNSGRIILSQISSGSVIPI 116 (329)
Q Consensus 51 -f~~------~----~~~~~~-~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~--g~r~~~~~~~~~~~~~~~~~~~~ 116 (329)
+.. + |.+.++ +|++..+.+++.+...++.+++.++.|++.||+ ++|+ .+. .+..+...+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~-----~~~--~~~~~~~~~ 333 (451)
T 1pw4_A 261 NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG-----ATG--VFFMTLVTI 333 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH-----HHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-----hHH--HHHHHHHHH
Confidence 000 0 656644 899999999999999999999999999999999 8876 322 222222212
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHH-HhhhHHHHHHHHhhh
Q 041066 117 AAVLLLVLPDDPSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESI-LASFAPPVVGLLAQH 194 (329)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~~~~~~~g~l~~~ 194 (329)
+.+.+.. ... ...+...+..++.|++.+...+ ...+++.|.+|++.||+++|+.+.+.++ |++++|.+.|.+.+.
T Consensus 334 ~~~~~~~-~~~-~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 409 (451)
T 1pw4_A 334 ATIVYWM-NPA-GNPTVDMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 409 (451)
T ss_dssp HHHHTTS-CCT-TCHHHHHHHHHHHHHHHTHHHH-HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHH-hcc-cCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222222 111 1344455666777777766565 6678999999999999999999999999 999999999999987
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.55 E-value=4e-13 Score=119.20 Aligned_cols=131 Identities=11% Similarity=0.125 Sum_probs=94.5
Q ss_pred HHH-H-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 041066 55 AYV-V-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGF 132 (329)
Q Consensus 55 ~~~-~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (329)
|.| . +.+|++..+++++.+...++.+++.++.|+++||+++|+ .+. ...+...+..+.+... +.. +
T Consensus 282 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~-----~~~---~~~~~~~~~~~~~~~~---~~~-~ 349 (438)
T 3o7q_A 282 IRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK-----VLA---AYALIAMALCLISAFA---GGH-V 349 (438)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH-----HHH---HHHHHHHHHHHHHHHC---CHH-H
T ss_pred HHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----HHH---HHHHHHHHHHHHHHHc---CCc-H
Confidence 555 6 445999999999999999999999999999999999987 332 2222222222222222 221 2
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCCC
Q 041066 133 MHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPV 201 (329)
Q Consensus 133 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 201 (329)
..+.+++.|++.+...+ ..+++..|.+|++ ++.+.++.. ...++++++|.+.|.+.+..+++...
T Consensus 350 -~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~ 414 (438)
T 3o7q_A 350 -GLIALTLCSAFMSIQYP-TIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTA 414 (438)
T ss_dssp -HHHHHHHHHHHHTTHHH-HHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGG
T ss_pred -HHHHHHHHHHHHHHHHH-HHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 23444667777776677 7788888888876 889988877 67799999999999999985435553
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.51 E-value=2.9e-13 Score=121.97 Aligned_cols=132 Identities=12% Similarity=0.168 Sum_probs=88.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|++.+..+.+...........++..+++.++++++.||+|||+ ....... ...+....+...............
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~-----~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~ 374 (491)
T 4gc0_A 301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKP-----LQIIGAL-GMAIGMFSLGTAFYTQAPGIVALL 374 (491)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHH-----HHHHHHH-HHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcc-----hhccchH-HHHHHHHHHHHHHhcccchHHHHH
Confidence 5566778888888888888889999999999999999999998 3321111 111111111112222222222222
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
...++..+++.+ ..+ +.+.+.+|++|.+.|+++.|+.+.++++++.+++.+.+.+.+.
T Consensus 375 ~~~~~~~~~~~~-~~~-~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~ 432 (491)
T 4gc0_A 375 SMLFYVAAFAMS-WGP-VCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKN 432 (491)
T ss_dssp HHHHHHHHHHTT-TTH-HHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHH
T ss_pred HHHHHHHHHHhH-HHH-HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223333333 234 6788999999999999999999999999999999988877654
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.46 E-value=7.6e-13 Score=119.31 Aligned_cols=136 Identities=12% Similarity=0.065 Sum_probs=92.8
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHh----cC-CCC
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLV----LP-DDP 128 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~ 128 (329)
|.+. +.++.+....+++.....++.+++.++.++++||++||+......+ ....+...++.+.+.. .. ...
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (491)
T 4aps_A 307 ATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKF---AVGLMFAGLSFLLMAIPGALYGTSGK 383 (491)
T ss_dssp HHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHH---HHHHHHHHHHHTTTHHHHHHCCCCTT
T ss_pred HHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHH---HHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4455 4567776778888888899999999999999999999864211111 1111111111111111 00 112
Q ss_pred chhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 129 STGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 129 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
...+...+..++.|++.+...+ ..++++.|.+|++.||++.|+.+...++|+++++.+.+.+.+.
T Consensus 384 ~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 384 VSPLWLVGSWALVILGEMLISP-VGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp CCTHHHHHHHHHHHHHHHTTTT-HHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred ccHHHHHHHHHHHHHHHHHHhH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2344566677778888888777 7899999999999999999999999999999999998776653
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.46 E-value=5.1e-13 Score=120.45 Aligned_cols=126 Identities=16% Similarity=0.248 Sum_probs=98.7
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 041066 61 IGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDT-LVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLV 139 (329)
Q Consensus 61 ~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (329)
+|++..+.+++.+...++..++.+++|+++|| +|||+ .+. ...+...++.+..... + ..+.+.+..+
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~-----~~~---~~~~~~~~~~~~~~~~---~-~~~~~~~~~~ 116 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP-----AVF---WGGVLIMLGHIVLALP---F-GASALFGSII 116 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH-----HHH---HHHHHHHHHHHHHHSC---C-STTHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH-----HHH---HHHHHHHHHHHHHHHh---h-hHHHHHHHHH
Confidence 89999999999999999999999999999999 89998 332 2222232333333322 2 2334667778
Q ss_pred HHHHHhhccCCCCchhHHhhhcCCcc--hhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 140 IMGLCISWNAPTTNNPIFAEIVPERS--RTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 140 ~~g~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
+.|++.+...+ ...+++.|.+|+++ |+.+.++.+...++|..++|.+.+.+.+. .+|..
T Consensus 117 l~g~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~g~~~ 177 (491)
T 4aps_A 117 LIIIGTGFLKP-NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA-AGYHV 177 (491)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHH
T ss_pred HHHHHHHhccc-hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh-hhHHH
Confidence 88988888777 78999999999988 88888989999999999999999999886 34443
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.44 E-value=4e-13 Score=119.59 Aligned_cols=136 Identities=14% Similarity=0.154 Sum_probs=103.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCC-CCchhHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPD-DPSTGFM 133 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 133 (329)
|.+.+++ .+..+.+++.+...++..++.++.|+++||+|||+ .+. ...+...++.+.....+. .. ..+.
T Consensus 52 ~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~-----~l~---~~~~~~~~~~~~~~~~~~~~~-~~~~ 121 (451)
T 1pw4_A 52 PYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV-----FLP---AGLILAAAVMLFMGFVPWATS-SIAV 121 (451)
T ss_dssp HHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH-----HHH---HHHHHHHHHHHHHHHCHHHHS-SSSH
T ss_pred HHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH-----HHH---HHHHHHHHHHHHHHhhhhccc-cHHH
Confidence 5566678 99999999999999999999999999999999998 332 222222233332222100 11 2334
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCCC
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPV 201 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 201 (329)
+.+..++.|++.+...+ ...+++.|.+|+++|+.++++.+....+|..++|.+.+.+.+..++|+..
T Consensus 122 l~~~~~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~ 188 (451)
T 1pw4_A 122 MFVLLFLCGWFQGMGWP-PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAA 188 (451)
T ss_dssp HHHHHHHHHHHHHHTHH-HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTC
T ss_pred HHHHHHHHHHHhhhccc-hHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 66778889999888777 78899999999999999999999999999999999999988763227765
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.44 E-value=5.2e-13 Score=118.46 Aligned_cols=129 Identities=15% Similarity=0.079 Sum_probs=102.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|++..+.+++.+...++..++.++.|+++||+|||+ .+. ...+...++.+........+ ..+.+
T Consensus 50 ~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~-----~l~---~~~~~~~~~~~~~~~~~~~~-~~~~l 120 (438)
T 3o7q_A 50 PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA-----GII---TGLFLYALGAALFWPAAEIM-NYTLF 120 (438)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHH-----HHH---HHHHHHHHHHHHHHHHHHTT-CHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchH-----HHH---HHHHHHHHHHHHHHhccccc-cHHHH
Confidence 7777899999999999999999999999999999999999998 332 22222222222221101122 35567
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQ 193 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~ 193 (329)
.+..++.|++.+...+ ...+++.|.+|+++|+.+.++.+...++|..++|.+.+.+..
T Consensus 121 ~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 178 (438)
T 3o7q_A 121 LVGLFIIAAGLGCLET-AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL 178 (438)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhhHHHhhh-hHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888899999988887 789999999999999999999999999999999999998883
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.37 E-value=5.5e-13 Score=117.77 Aligned_cols=117 Identities=9% Similarity=0.074 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH
Q 041066 65 HGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLC 144 (329)
Q Consensus 65 ~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 144 (329)
....+++.+...++.+++.++.|+++||+|+|+ ++. ...+...+..+.+. ..++ .+.+.+..++.+++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----~l~---~~~~~~~~~~~~~~---~~~~-~~~~~~~~~l~~~~ 325 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-----ALL---LAGTIMSVRIIGSS---FATS-ALEVVILKTLHMFE 325 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----HHH---HHHHHHHHHHHHHT---TCCS-HHHHHHHTTHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-----HHH---HHHHHHHHHHHHHH---Hhcc-HHHHHHHHHHHHHH
Confidence 445577777778888999999999999999987 332 12222222222221 1222 22333344444555
Q ss_pred hhccCCCCchhHHhhhcCCcchhHHHHH-HHHHHHHHhhhHHHHHHHHhhh
Q 041066 145 ISWNAPTTNNPIFAEIVPERSRTSIYAL-DRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+...+ ..+.++.|.+|++.||++.++ ++..+++|++++|.+.|.+.+.
T Consensus 326 ~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~ 375 (417)
T 2cfq_A 326 VPFLLV-GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES 375 (417)
T ss_dssp HHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH
T ss_pred HHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh
Confidence 443334 457899999999999999999 4888889999999999998886
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.35 E-value=1e-13 Score=120.64 Aligned_cols=181 Identities=14% Similarity=0.092 Sum_probs=118.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-ccccC----CcchhHH------HHHH----------HHHH-H
Q 041066 2 GIPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKS-RAKDQ----KPHKAFC------FVIF----------AYVV-R 59 (329)
Q Consensus 2 ~~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~-~~~~~----~~~~~~~------f~~~----------~~~~-~ 59 (329)
+++|||+.|++.+++.++..+..++.+||+++.+++. +..+. .++|.++ +... |.+. +
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (375)
T 2gfp_A 149 TMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGA 228 (375)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999988887777665666677633222111 11111 1234444 0000 4444 4
Q ss_pred HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHH-HHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 041066 60 TIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQIS-SGSVIPIAAVLLLVLPDDPSTGFMHGLVL 138 (329)
Q Consensus 60 ~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (329)
.+|+++.+.+++.+...++.+++.++.+++.||++++. ...... ...+... ...... .....+...+..
T Consensus 229 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~------~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~ 298 (375)
T 2gfp_A 229 VLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM------WQSVICCLLAGLLM--WIPDWF--GVMNVWTLLVPA 298 (375)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH------HHHHHHHHHTSSSS--SHHHHH--HHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH--HHHhhh--ccccHHHHHHHH
Confidence 58999999999999999999999999999999998732 221111 1111000 000000 011234455566
Q ss_pred HHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 139 VIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
++.|++.+...+ ...+++.|..| ++||++.|+.+...++|+.++|.+.|.+.+.
T Consensus 299 ~l~g~~~~~~~~-~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 299 ALFFFGAGMLFP-LATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT 352 (375)
T ss_dssp HHHHHHHHHTSS-TTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred HHHHHHHHHhhH-HHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777888887777 88999999998 7899999999999999999999999888765
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.29 E-value=1.6e-11 Score=111.48 Aligned_cols=127 Identities=14% Similarity=0.134 Sum_probs=97.4
Q ss_pred HHHHHhC------CChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 041066 56 YVVRTIG------FSHGLTVFLMTLFTIAGSLGGLFGGWMGDTL-VKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDP 128 (329)
Q Consensus 56 ~~~~~~g------~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (329)
++.+++| ++..+.+++.+...++..++.+++|+++||+ |||+ .+. ...+...++.+......
T Consensus 38 ~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~-----~~~---~~~~~~~~~~~~~~~~~--- 106 (524)
T 2xut_A 38 FLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN-----TIL---WLSLIYCVGHAFLAIFE--- 106 (524)
T ss_dssp HHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH-----HHH---HHHHHHHHHHHHHHHTS---
T ss_pred HHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----HHH---HHHHHHHHHHHHHHHhc---
Confidence 3446789 9999999999999999999999999999999 9998 332 22222223333332221
Q ss_pred chhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHH---HHHHHHHHhhhHHHHHHHHhhh
Q 041066 129 STGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYAL---DRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 129 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
...+.+.+..++.|++.+...+ ...+++.|.+|+++|+.+.++ .+...++|.+++|.+.+.+.+.
T Consensus 107 ~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (524)
T 2xut_A 107 HSVQGFYTGLFLIALGSGGIKP-LVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN 174 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHTTHH-HHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT
T ss_pred ccHHHHHHHHHHHHHhccccch-hHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1244566778888999888777 789999999999999876666 8889999999999999988775
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.27 E-value=1.6e-12 Score=112.95 Aligned_cols=127 Identities=15% Similarity=0.133 Sum_probs=100.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|.++.+.+++.+...++..++.++.|+++||+|||+.. . .+..+ ..++.+..... ...+.+
T Consensus 24 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-----~--~~~~~-~~~~~~~~~~~----~~~~~l 91 (375)
T 2gfp_A 24 ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI-----L--VGMSI-FMLATLVAVTT----SSLTVL 91 (375)
T ss_dssp HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC-----H--HHHHH-HHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH-----H--HHHHH-HHHHHHHHHHh----ccHHHH
Confidence 666788999999999999999999999999999999999999842 2 11111 11222222111 134557
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+..++.|++.+...+ ...+++.|..|+++|+.++++.+....+|..++|.+.+.+.+.
T Consensus 92 ~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 150 (375)
T 2gfp_A 92 IAASAMQGMGTGVGGV-MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM 150 (375)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHhhhh-hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 7778888998887777 7889999999999999999999999999999999999988765
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.23 E-value=6.6e-11 Score=106.53 Aligned_cols=121 Identities=15% Similarity=0.097 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCC--------------CCch
Q 041066 65 HGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPD--------------DPST 130 (329)
Q Consensus 65 ~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~ 130 (329)
..+.|++.+.+.++.++|+++.|+++||+|||+ .+. ...+...++.+.....+. ....
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~-----~l~---~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~ 125 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRD-----SLK---IAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGY 125 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH-----HHH---HHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHH---HHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhh
Confidence 445678888889999999999999999999998 332 222222222222221110 1224
Q ss_pred hHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 131 GFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 131 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
...+.+..++.|++.+...+ ...++++|..|++.|+...++.+....+|..+++.+...+...
T Consensus 126 ~~~l~~~R~l~G~g~G~~~~-~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~ 188 (491)
T 4gc0_A 126 VPEFVIYRIIGGIGVGLASM-LSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARS 188 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccc
Confidence 66788999999999998888 8899999999999999999999999988888888776665544
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.93 E-value=1.5e-09 Score=98.61 Aligned_cols=63 Identities=8% Similarity=-0.058 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 131 GFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 131 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+.+.+..++.|++.+...+ ..++++.|..|++.||+++|+.++..++|+.++|.+.+.+.+.
T Consensus 405 ~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 405 IFWQILPYALLTFGEVLVSA-TGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-HHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34455667777888777677 7788999999999999999999999999999999999988763
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.48 E-value=1.8e-08 Score=88.80 Aligned_cols=130 Identities=14% Similarity=0.140 Sum_probs=74.0
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCC-CCchhH
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPD-DPSTGF 132 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 132 (329)
|.++ +++|+++.+.|++.+...++..++.++.|+++||+|||+ .+...................... ...
T Consensus 31 ~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~--- 102 (417)
T 2cfq_A 31 PIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK-----YLLWIITGMLVMFAPFFIFIFGPLLQYN--- 102 (417)
T ss_dssp HHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCC-----HHHHHHHHTTSCHHHHHHHTHHHHHHTT---
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 5555 468999999999999999999999999999999999998 333111111000001110000000 000
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHhhhcCC--cchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 133 MHGLVLVIMGLCISWNAPTTNNPIFAEIVPE--RSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 133 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
......+.+++.+...+ .......+..++ +.++.++|..+...++|.+++|.+.+++.+.
T Consensus 103 -~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 164 (417)
T 2cfq_A 103 -ILVGSIVGGIYLGFCFN-AGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI 164 (417)
T ss_dssp -CCHHHHGGGSSTTHHHH-TTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHh-hhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01111111222211111 112223333222 3467778888888889999999999988763
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=38.84 E-value=16 Score=16.56 Aligned_cols=13 Identities=8% Similarity=0.046 Sum_probs=10.2
Q ss_pred HHHHHHhhhhhcc
Q 041066 85 FGGWMGDTLVKRL 97 (329)
Q Consensus 85 ~~g~l~dr~g~r~ 97 (329)
+.|.++.++||+.
T Consensus 2 lfgklikkfgrka 14 (26)
T 2g9p_A 2 LFGKLIKKFGRKA 14 (26)
T ss_dssp HHHHHHHHHTSHH
T ss_pred cHHHHHHHHhHHH
Confidence 3578889999875
No 16
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=24.58 E-value=92 Score=19.13 Aligned_cols=23 Identities=13% Similarity=0.002 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 041066 217 NAASLAKALYTAIGIPMTICCFI 239 (329)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~ 239 (329)
....++.+-+++.++.+++++++
T Consensus 15 DY~tLRigGLifA~vLfi~GI~i 37 (74)
T 2zxe_G 15 DYYRLRVVGLIVAAVLCVIGIII 37 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHheeccchhHHHHHHHHHHH
Confidence 34566666566555555555443
Done!