Query 041067
Match_columns 770
No_of_seqs 546 out of 4618
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 03:29:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041067hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 3E-116 6E-121 1072.7 67.4 750 5-769 26-892 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 3.5E-60 7.6E-65 549.2 28.5 430 165-616 161-652 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 6.7E-38 1.5E-42 329.4 17.5 244 167-415 1-284 (287)
4 PLN03194 putative disease resi 100.0 3E-33 6.6E-38 257.2 9.7 132 5-153 40-179 (187)
5 PLN00113 leucine-rich repeat r 99.9 7.1E-24 1.5E-28 260.1 16.4 275 480-763 70-349 (968)
6 PLN00113 leucine-rich repeat r 99.9 6.4E-22 1.4E-26 242.9 14.7 251 499-757 158-439 (968)
7 KOG0444 Cytoskeletal regulator 99.9 1.1E-23 2.5E-28 221.5 -2.6 258 498-764 96-380 (1255)
8 KOG0444 Cytoskeletal regulator 99.8 5.8E-21 1.3E-25 201.3 -2.0 244 505-757 7-256 (1255)
9 PLN03210 Resistant to P. syrin 99.8 5.5E-18 1.2E-22 208.5 18.8 220 535-763 635-910 (1153)
10 KOG4194 Membrane glycoprotein 99.8 1.9E-19 4.2E-24 189.0 2.2 267 486-762 154-431 (873)
11 KOG0472 Leucine-rich repeat pr 99.7 1.3E-19 2.9E-24 182.5 -4.1 243 502-757 180-539 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 5.2E-20 1.1E-24 185.4 -12.1 241 501-757 64-308 (565)
13 PRK15370 E3 ubiquitin-protein 99.7 1.2E-16 2.6E-21 184.1 10.9 224 505-757 199-426 (754)
14 KOG4194 Membrane glycoprotein 99.7 1.1E-16 2.3E-21 168.6 8.0 266 485-762 82-356 (873)
15 PRK15370 E3 ubiquitin-protein 99.6 3.8E-16 8.2E-21 180.0 9.7 227 506-764 179-405 (754)
16 PRK15387 E3 ubiquitin-protein 99.6 2.2E-15 4.7E-20 172.6 15.7 215 505-757 242-456 (788)
17 PRK15387 E3 ubiquitin-protein 99.6 7.4E-15 1.6E-19 168.2 15.4 218 505-764 222-439 (788)
18 PF01582 TIR: TIR domain; Int 99.6 3.3E-16 7.2E-21 145.1 -0.4 109 12-120 27-140 (141)
19 KOG0617 Ras suppressor protein 99.5 1.6E-16 3.4E-21 142.5 -3.7 181 548-735 25-211 (264)
20 KOG0618 Serine/threonine phosp 99.5 7.5E-16 1.6E-20 170.9 -1.3 239 505-759 219-489 (1081)
21 KOG0618 Serine/threonine phosp 99.5 4.1E-16 8.8E-21 173.0 -4.9 68 500-573 63-131 (1081)
22 KOG0617 Ras suppressor protein 99.5 9.6E-16 2.1E-20 137.5 -4.9 159 577-743 31-193 (264)
23 PRK04841 transcriptional regul 99.4 6E-11 1.3E-15 145.3 26.6 278 156-450 8-333 (903)
24 smart00255 TIR Toll - interleu 99.3 1.2E-11 2.6E-16 114.8 8.3 108 13-123 30-138 (140)
25 KOG0532 Leucine-rich repeat (L 99.3 5.4E-13 1.2E-17 141.0 -1.4 207 541-757 57-271 (722)
26 cd00116 LRR_RI Leucine-rich re 99.2 1.7E-12 3.6E-17 138.7 -1.2 253 500-757 18-318 (319)
27 cd00116 LRR_RI Leucine-rich re 99.1 4.7E-12 1E-16 135.3 -1.8 233 501-735 47-319 (319)
28 KOG0532 Leucine-rich repeat (L 99.1 2.3E-12 4.9E-17 136.4 -4.2 193 560-763 54-250 (722)
29 PF05729 NACHT: NACHT domain 99.1 1.4E-09 3.1E-14 103.9 13.2 139 186-328 1-160 (166)
30 PRK00411 cdc6 cell division co 99.0 1.8E-08 3.8E-13 111.0 21.7 167 156-328 24-217 (394)
31 KOG4237 Extracellular matrix p 99.0 9.9E-12 2.1E-16 126.2 -5.3 244 485-736 71-359 (498)
32 KOG4658 Apoptotic ATPase [Sign 98.9 4.9E-10 1.1E-14 131.8 5.0 224 535-763 524-787 (889)
33 TIGR00635 ruvB Holliday juncti 98.9 9.1E-09 2E-13 109.0 13.7 249 162-433 4-292 (305)
34 PF01637 Arch_ATPase: Archaeal 98.9 6.4E-09 1.4E-13 105.5 11.0 160 164-328 1-201 (234)
35 TIGR02928 orc1/cdc6 family rep 98.9 4.1E-07 9E-12 99.0 25.8 167 157-328 10-209 (365)
36 COG2909 MalT ATP-dependent tra 98.9 1.7E-07 3.6E-12 105.4 21.9 279 156-451 13-340 (894)
37 TIGR03015 pepcterm_ATPase puta 98.9 1.8E-07 4E-12 97.1 20.2 155 185-346 43-242 (269)
38 PRK00080 ruvB Holliday junctio 98.9 5.6E-09 1.2E-13 111.4 8.8 241 159-431 22-311 (328)
39 KOG4237 Extracellular matrix p 98.9 1.4E-10 3E-15 117.9 -3.3 126 534-662 67-198 (498)
40 COG4886 Leucine-rich repeat (L 98.9 2.6E-09 5.7E-14 117.6 6.4 173 555-736 115-290 (394)
41 COG3899 Predicted ATPase [Gene 98.8 5.2E-08 1.1E-12 115.3 16.5 288 163-450 1-387 (849)
42 COG4886 Leucine-rich repeat (L 98.8 3.7E-09 7.9E-14 116.5 4.8 178 534-718 116-296 (394)
43 KOG1259 Nischarin, modulator o 98.8 8.9E-10 1.9E-14 108.1 -0.3 129 629-763 283-415 (490)
44 PLN03150 hypothetical protein; 98.8 1.8E-08 3.9E-13 116.4 9.0 113 654-766 420-535 (623)
45 KOG3207 Beta-tubulin folding c 98.7 2.6E-09 5.6E-14 110.4 0.1 199 534-736 121-339 (505)
46 KOG3207 Beta-tubulin folding c 98.7 2.8E-09 6.2E-14 110.1 -0.1 202 554-757 119-337 (505)
47 PF14580 LRR_9: Leucine-rich r 98.7 2.4E-08 5.2E-13 94.5 5.8 128 602-755 15-149 (175)
48 KOG1259 Nischarin, modulator o 98.7 3.8E-09 8.3E-14 103.7 0.3 134 602-740 280-416 (490)
49 COG2256 MGS1 ATPase related to 98.6 2.6E-07 5.7E-12 95.5 11.6 145 162-336 30-184 (436)
50 PRK06893 DNA replication initi 98.6 6.6E-07 1.4E-11 90.0 14.4 132 185-342 39-186 (229)
51 PF13173 AAA_14: AAA domain 98.6 5.1E-07 1.1E-11 82.0 11.9 119 186-323 3-127 (128)
52 PF14580 LRR_9: Leucine-rich r 98.6 3.5E-08 7.5E-13 93.5 4.1 131 549-708 12-149 (175)
53 COG3903 Predicted ATPase [Gene 98.6 8.8E-08 1.9E-12 99.6 6.9 256 184-449 13-314 (414)
54 PRK15386 type III secretion pr 98.6 1.9E-07 4.2E-12 98.9 9.1 159 575-758 48-212 (426)
55 PRK15386 type III secretion pr 98.5 7.3E-07 1.6E-11 94.6 10.7 132 555-709 51-187 (426)
56 cd00009 AAA The AAA+ (ATPases 98.5 1.8E-06 4E-11 80.2 12.0 123 165-302 1-131 (151)
57 PTZ00202 tuzin; Provisional 98.4 5.2E-05 1.1E-09 80.2 23.3 161 156-328 256-431 (550)
58 PRK13342 recombination factor 98.4 8.6E-06 1.9E-10 89.7 17.9 142 160-328 10-161 (413)
59 PF13676 TIR_2: TIR domain; PD 98.4 4.7E-08 1E-12 85.0 -0.2 69 12-87 23-91 (102)
60 TIGR03420 DnaA_homol_Hda DnaA 98.4 9.4E-06 2E-10 81.9 16.5 134 167-328 22-169 (226)
61 PTZ00112 origin recognition co 98.4 1.8E-05 3.9E-10 90.0 19.7 185 157-347 750-969 (1164)
62 PF13191 AAA_16: AAA ATPase do 98.4 4.6E-07 1E-11 88.2 5.5 50 163-212 1-51 (185)
63 PLN03150 hypothetical protein; 98.4 7.8E-07 1.7E-11 102.9 8.2 105 607-711 419-527 (623)
64 KOG1909 Ran GTPase-activating 98.3 4.5E-08 9.8E-13 98.8 -2.3 106 652-757 185-309 (382)
65 TIGR01242 26Sp45 26S proteasom 98.3 5.9E-06 1.3E-10 89.5 13.8 149 160-328 120-303 (364)
66 PF13401 AAA_22: AAA domain; P 98.3 3.3E-06 7.1E-11 77.1 9.8 109 185-300 4-125 (131)
67 PRK05564 DNA polymerase III su 98.3 3E-05 6.5E-10 82.2 17.9 149 162-328 4-162 (313)
68 PRK07003 DNA polymerase III su 98.3 9E-05 1.9E-09 84.1 21.7 150 160-328 14-188 (830)
69 KOG2120 SCF ubiquitin ligase, 98.2 3.1E-08 6.7E-13 97.5 -6.0 174 556-734 185-374 (419)
70 KOG0531 Protein phosphatase 1, 98.2 1.9E-07 4.2E-12 103.1 -1.1 190 535-736 73-268 (414)
71 KOG2028 ATPase related to the 98.2 8.3E-06 1.8E-10 82.8 10.4 145 161-328 137-291 (554)
72 PRK14963 DNA polymerase III su 98.2 1.6E-05 3.4E-10 88.8 13.0 160 160-328 12-185 (504)
73 PRK12402 replication factor C 98.2 8.2E-05 1.8E-09 80.0 18.2 163 161-328 14-194 (337)
74 PRK08727 hypothetical protein; 98.2 7.7E-05 1.7E-09 75.3 16.7 132 186-343 42-188 (233)
75 PRK14961 DNA polymerase III su 98.1 0.00017 3.7E-09 77.9 20.0 156 159-328 13-188 (363)
76 PRK07471 DNA polymerase III su 98.1 0.00024 5.1E-09 76.2 20.7 165 158-328 15-210 (365)
77 PLN03025 replication factor C 98.1 1.9E-05 4.2E-10 83.9 12.3 154 159-328 10-168 (319)
78 PRK09376 rho transcription ter 98.1 5.2E-06 1.1E-10 87.3 7.6 88 186-276 170-269 (416)
79 PRK00440 rfc replication facto 98.1 9.6E-05 2.1E-09 78.8 17.6 151 161-328 16-171 (319)
80 PRK13341 recombination factor 98.1 1.6E-05 3.6E-10 92.1 12.3 140 161-328 27-178 (725)
81 PRK04195 replication factor C 98.1 0.00012 2.6E-09 82.4 17.9 150 158-328 10-170 (482)
82 PRK14960 DNA polymerase III su 98.1 0.00036 7.9E-09 78.5 20.8 151 159-328 12-187 (702)
83 PRK14949 DNA polymerase III su 98.1 0.0002 4.3E-09 83.1 19.2 154 160-328 14-188 (944)
84 PRK03992 proteasome-activating 98.1 0.00016 3.4E-09 78.9 17.8 148 161-328 130-312 (389)
85 PRK12323 DNA polymerase III su 98.1 0.00029 6.4E-09 79.0 19.8 163 159-328 13-193 (700)
86 PRK08084 DNA replication initi 98.0 0.00014 3E-09 73.5 15.8 139 162-328 23-177 (235)
87 PF13855 LRR_8: Leucine rich r 98.0 3.9E-06 8.4E-11 65.1 3.5 58 699-757 1-60 (61)
88 PHA02544 44 clamp loader, smal 98.0 0.00017 3.7E-09 76.8 16.9 165 158-344 17-194 (316)
89 PRK05642 DNA replication initi 98.0 0.00018 3.9E-09 72.6 16.1 118 185-328 45-176 (234)
90 PRK07940 DNA polymerase III su 98.0 8.6E-05 1.9E-09 80.3 14.4 145 162-328 5-186 (394)
91 TIGR02903 spore_lon_C ATP-depe 98.0 9.3E-05 2E-09 85.1 15.3 164 160-328 152-363 (615)
92 KOG1909 Ran GTPase-activating 98.0 5.4E-07 1.2E-11 91.2 -2.5 202 556-757 30-281 (382)
93 COG1474 CDC6 Cdc6-related prot 98.0 0.00018 3.9E-09 77.1 16.4 165 158-328 13-200 (366)
94 TIGR02397 dnaX_nterm DNA polym 98.0 0.00035 7.7E-09 75.7 19.1 151 159-328 11-186 (355)
95 PF00308 Bac_DnaA: Bacterial d 98.0 0.00032 7E-09 69.9 17.0 161 184-361 33-212 (219)
96 PRK08903 DnaA regulatory inact 98.0 0.0001 2.2E-09 74.4 13.6 166 165-361 22-203 (227)
97 PRK14957 DNA polymerase III su 98.0 0.00031 6.7E-09 78.8 18.3 149 160-328 14-188 (546)
98 cd01128 rho_factor Transcripti 98.0 1.8E-05 3.9E-10 79.9 7.7 88 185-275 16-115 (249)
99 PF13855 LRR_8: Leucine rich r 98.0 6.4E-06 1.4E-10 63.8 3.4 57 653-709 2-59 (61)
100 KOG0531 Protein phosphatase 1, 98.0 7E-07 1.5E-11 98.7 -3.0 238 503-758 70-317 (414)
101 PF05496 RuvB_N: Holliday junc 98.0 0.00019 4.2E-09 69.8 13.9 144 158-328 20-189 (233)
102 TIGR02639 ClpA ATP-dependent C 97.9 0.0002 4.2E-09 84.8 17.0 166 139-328 164-355 (731)
103 PF12799 LRR_4: Leucine Rich r 97.9 7.4E-06 1.6E-10 58.3 3.0 43 723-766 1-43 (44)
104 PF14516 AAA_35: AAA-like doma 97.9 0.0025 5.4E-08 67.9 23.7 189 157-349 6-246 (331)
105 PRK09087 hypothetical protein; 97.9 9.6E-05 2.1E-09 74.0 12.0 107 185-328 44-163 (226)
106 PRK05896 DNA polymerase III su 97.9 0.00059 1.3E-08 76.7 18.2 159 159-328 13-188 (605)
107 TIGR02881 spore_V_K stage V sp 97.9 0.0002 4.3E-09 73.8 13.6 148 163-328 7-188 (261)
108 PRK14962 DNA polymerase III su 97.9 0.0014 3.1E-08 72.7 21.1 151 159-328 11-186 (472)
109 PRK06645 DNA polymerase III su 97.8 0.00042 9.2E-09 77.2 16.5 155 159-328 18-197 (507)
110 PRK08691 DNA polymerase III su 97.8 0.00092 2E-08 76.0 19.1 151 159-328 13-188 (709)
111 KOG2120 SCF ubiquitin ligase, 97.8 2.1E-07 4.6E-12 91.8 -8.5 177 579-757 185-374 (419)
112 PRK14964 DNA polymerase III su 97.8 0.0012 2.6E-08 73.0 19.6 151 159-328 10-185 (491)
113 PRK07994 DNA polymerase III su 97.8 0.00016 3.4E-09 82.3 12.9 151 159-328 13-188 (647)
114 PRK14956 DNA polymerase III su 97.8 0.00015 3.3E-09 79.1 12.2 160 159-328 15-190 (484)
115 PRK14951 DNA polymerase III su 97.8 0.0022 4.9E-08 73.0 21.9 159 160-328 14-193 (618)
116 TIGR00767 rho transcription te 97.8 5.7E-05 1.2E-09 80.0 8.5 88 186-276 169-268 (415)
117 TIGR03689 pup_AAA proteasome A 97.8 0.0008 1.7E-08 74.7 17.8 165 159-337 179-384 (512)
118 PRK12377 putative replication 97.8 0.00051 1.1E-08 69.4 14.9 100 185-300 101-205 (248)
119 PRK07952 DNA replication prote 97.8 0.0011 2.4E-08 66.7 17.3 101 185-300 99-204 (244)
120 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00039 8.4E-09 82.9 16.4 166 139-328 169-360 (852)
121 PRK14955 DNA polymerase III su 97.8 0.00018 3.9E-09 78.7 12.3 165 159-328 13-196 (397)
122 COG1373 Predicted ATPase (AAA+ 97.8 0.00041 9E-09 75.6 14.8 148 169-341 24-191 (398)
123 KOG2227 Pre-initiation complex 97.7 0.00068 1.5E-08 71.9 15.0 185 159-348 147-360 (529)
124 PRK14088 dnaA chromosomal repl 97.7 0.0014 3E-08 72.6 18.4 160 185-361 130-309 (440)
125 PRK14087 dnaA chromosomal repl 97.7 0.0012 2.6E-08 73.2 17.9 129 185-328 141-285 (450)
126 PRK08116 hypothetical protein; 97.7 0.00017 3.7E-09 74.1 10.4 102 186-301 115-221 (268)
127 PTZ00454 26S protease regulato 97.7 0.0013 2.8E-08 71.5 17.6 151 159-328 142-326 (398)
128 TIGR00678 holB DNA polymerase 97.7 0.00048 1E-08 67.2 13.0 127 185-328 14-165 (188)
129 PRK12422 chromosomal replicati 97.7 0.0011 2.3E-08 73.2 17.1 127 185-328 141-281 (445)
130 PRK09112 DNA polymerase III su 97.7 0.00016 3.4E-09 77.1 10.2 163 157-328 18-210 (351)
131 TIGR00362 DnaA chromosomal rep 97.7 0.0013 2.8E-08 72.6 17.6 181 162-361 111-314 (405)
132 PRK00149 dnaA chromosomal repl 97.7 0.0013 2.9E-08 73.4 17.7 149 163-328 124-290 (450)
133 PF00004 AAA: ATPase family as 97.7 0.00027 5.8E-09 64.3 10.0 23 188-210 1-23 (132)
134 PRK14958 DNA polymerase III su 97.7 0.0035 7.6E-08 70.4 20.5 150 160-328 14-188 (509)
135 CHL00095 clpC Clp protease ATP 97.7 0.00033 7.3E-09 83.8 13.2 167 139-328 161-351 (821)
136 PTZ00361 26 proteosome regulat 97.7 0.00032 6.8E-09 76.7 11.8 148 162-328 183-364 (438)
137 PRK14970 DNA polymerase III su 97.7 0.0007 1.5E-08 73.7 14.6 152 159-328 14-177 (367)
138 TIGR02880 cbbX_cfxQ probable R 97.7 0.00069 1.5E-08 70.4 13.8 124 187-328 60-205 (284)
139 KOG1859 Leucine-rich repeat pr 97.7 4.7E-06 1E-10 91.6 -2.3 173 576-757 81-265 (1096)
140 PRK07764 DNA polymerase III su 97.7 0.0014 3E-08 77.3 17.8 155 160-328 13-189 (824)
141 KOG1859 Leucine-rich repeat pr 97.7 5.2E-07 1.1E-11 98.9 -9.7 125 607-735 165-291 (1096)
142 PRK14954 DNA polymerase III su 97.7 0.0013 2.9E-08 75.0 17.0 165 159-328 13-196 (620)
143 PRK10865 protein disaggregatio 97.6 0.0012 2.6E-08 79.0 17.2 66 139-211 160-225 (857)
144 PRK06620 hypothetical protein; 97.6 0.001 2.3E-08 65.9 13.9 104 186-328 45-157 (214)
145 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00067 1.5E-08 81.5 14.6 150 160-328 171-346 (852)
146 PRK14086 dnaA chromosomal repl 97.6 0.0025 5.5E-08 71.8 17.8 158 186-361 315-492 (617)
147 PRK14969 DNA polymerase III su 97.6 0.00083 1.8E-08 75.9 14.0 150 160-328 14-188 (527)
148 PRK09111 DNA polymerase III su 97.6 0.0037 8E-08 71.4 19.1 159 159-328 21-201 (598)
149 PRK14959 DNA polymerase III su 97.5 0.0023 4.9E-08 72.5 16.4 145 160-328 14-188 (624)
150 KOG3665 ZYG-1-like serine/thre 97.5 2E-05 4.3E-10 91.1 0.2 151 606-757 122-286 (699)
151 KOG2543 Origin recognition com 97.5 0.00059 1.3E-08 70.5 10.7 163 161-332 5-194 (438)
152 PRK11034 clpA ATP-dependent Cl 97.5 0.001 2.2E-08 77.9 14.1 149 161-328 185-359 (758)
153 PRK08181 transposase; Validate 97.5 0.00048 1E-08 70.4 10.1 98 186-301 107-209 (269)
154 KOG2982 Uncharacterized conser 97.5 3.2E-05 7E-10 76.7 0.7 211 536-752 47-285 (418)
155 PRK14952 DNA polymerase III su 97.5 0.0064 1.4E-07 69.0 19.1 155 160-328 11-187 (584)
156 PRK07133 DNA polymerase III su 97.4 0.0024 5.2E-08 73.4 14.8 158 160-328 16-187 (725)
157 PRK09183 transposase/IS protei 97.4 0.00083 1.8E-08 68.8 10.0 99 186-301 103-206 (259)
158 CHL00176 ftsH cell division pr 97.4 0.0032 6.9E-08 72.4 15.7 149 161-328 182-363 (638)
159 smart00382 AAA ATPases associa 97.4 0.00053 1.2E-08 62.8 7.9 35 186-220 3-37 (148)
160 PRK06526 transposase; Provisio 97.4 0.00034 7.4E-09 71.1 7.0 99 185-301 98-201 (254)
161 PRK10536 hypothetical protein; 97.4 0.0014 3.1E-08 65.5 11.1 133 161-301 54-213 (262)
162 PRK08451 DNA polymerase III su 97.4 0.014 3.1E-07 65.3 20.1 154 159-328 11-186 (535)
163 CHL00181 cbbX CbbX; Provisiona 97.4 0.0033 7.1E-08 65.4 14.0 126 186-328 60-206 (287)
164 PRK14953 DNA polymerase III su 97.4 0.0075 1.6E-07 67.4 17.6 145 160-328 14-188 (486)
165 PRK11331 5-methylcytosine-spec 97.4 0.00048 1E-08 74.4 7.8 55 162-220 175-231 (459)
166 PRK14950 DNA polymerase III su 97.3 0.0033 7.1E-08 72.4 15.1 159 160-328 14-189 (585)
167 PRK06305 DNA polymerase III su 97.3 0.003 6.6E-08 70.0 14.2 153 159-328 14-190 (451)
168 TIGR01241 FtsH_fam ATP-depende 97.3 0.0062 1.3E-07 68.9 16.8 173 161-353 54-263 (495)
169 PRK06921 hypothetical protein; 97.3 0.00057 1.2E-08 70.1 7.6 36 185-220 117-153 (266)
170 KOG4341 F-box protein containi 97.3 6.5E-06 1.4E-10 85.3 -6.6 88 673-760 344-440 (483)
171 cd01133 F1-ATPase_beta F1 ATP 97.3 0.00064 1.4E-08 69.0 7.7 87 186-275 70-175 (274)
172 PRK07399 DNA polymerase III su 97.3 0.016 3.6E-07 60.9 18.3 161 162-328 4-192 (314)
173 COG0593 DnaA ATPase involved i 97.3 0.0073 1.6E-07 64.8 15.3 129 184-328 112-254 (408)
174 PRK05707 DNA polymerase III su 97.2 0.0079 1.7E-07 63.7 15.5 65 264-328 107-175 (328)
175 KOG0989 Replication factor C, 97.2 0.021 4.5E-07 57.8 16.9 156 158-328 32-198 (346)
176 PF12799 LRR_4: Leucine Rich r 97.2 0.00041 8.9E-09 49.3 3.7 40 699-739 1-40 (44)
177 TIGR01243 CDC48 AAA family ATP 97.2 0.0089 1.9E-07 71.1 17.3 157 161-337 177-364 (733)
178 PF01695 IstB_IS21: IstB-like 97.2 0.00064 1.4E-08 65.3 6.0 36 185-220 47-82 (178)
179 PRK14965 DNA polymerase III su 97.2 0.015 3.2E-07 66.7 18.0 161 159-328 13-188 (576)
180 PRK14948 DNA polymerase III su 97.2 0.015 3.3E-07 66.9 18.0 159 160-328 14-190 (620)
181 PRK10865 protein disaggregatio 97.2 0.0035 7.6E-08 75.2 13.3 114 162-285 568-694 (857)
182 KOG0991 Replication factor C, 97.2 0.0058 1.2E-07 59.0 11.8 50 159-210 24-73 (333)
183 COG1484 DnaC DNA replication p 97.1 0.0011 2.4E-08 67.5 7.5 75 184-274 104-178 (254)
184 PRK06647 DNA polymerase III su 97.1 0.0072 1.6E-07 68.7 14.6 160 159-328 13-188 (563)
185 PRK08118 topology modulation p 97.1 0.0012 2.6E-08 62.8 6.9 32 187-218 3-37 (167)
186 PRK14971 DNA polymerase III su 97.1 0.017 3.6E-07 66.6 17.4 149 160-328 15-190 (614)
187 cd01131 PilT Pilus retraction 97.1 0.0018 3.8E-08 63.6 8.1 110 186-304 2-112 (198)
188 PRK06835 DNA replication prote 97.1 0.0031 6.6E-08 66.6 10.3 35 186-220 184-218 (329)
189 KOG4579 Leucine-rich repeat (L 97.1 3.2E-05 6.8E-10 68.1 -4.0 98 608-708 29-132 (177)
190 PHA00729 NTP-binding motif con 97.0 0.0024 5.1E-08 62.9 8.5 27 184-210 16-42 (226)
191 PF05673 DUF815: Protein of un 97.0 0.0051 1.1E-07 60.9 10.7 55 158-212 23-79 (249)
192 COG1222 RPT1 ATP-dependent 26S 97.0 0.012 2.7E-07 60.6 13.7 147 162-328 151-332 (406)
193 TIGR03346 chaperone_ClpB ATP-d 97.0 0.0034 7.4E-08 75.5 11.4 130 161-300 564-717 (852)
194 KOG4579 Leucine-rich repeat (L 97.0 5.7E-05 1.2E-09 66.5 -2.7 109 631-742 28-142 (177)
195 TIGR01243 CDC48 AAA family ATP 97.0 0.022 4.9E-07 67.7 18.0 172 161-353 452-660 (733)
196 PRK05563 DNA polymerase III su 97.0 0.027 5.9E-07 64.2 17.8 159 159-328 13-188 (559)
197 PF00448 SRP54: SRP54-type pro 97.0 0.0086 1.9E-07 58.4 11.9 36 185-220 1-36 (196)
198 TIGR00602 rad24 checkpoint pro 97.0 0.004 8.8E-08 71.1 10.9 52 158-209 80-134 (637)
199 PF04665 Pox_A32: Poxvirus A32 97.0 0.004 8.6E-08 62.1 9.4 34 187-220 15-48 (241)
200 KOG2982 Uncharacterized conser 97.0 0.00047 1E-08 68.6 2.8 176 501-707 93-287 (418)
201 PRK06090 DNA polymerase III su 97.0 0.04 8.8E-07 57.8 17.4 149 171-340 12-199 (319)
202 PRK12608 transcription termina 97.0 0.0034 7.3E-08 66.4 9.3 99 172-274 121-231 (380)
203 PF05621 TniB: Bacterial TniB 97.0 0.0097 2.1E-07 60.9 12.3 164 169-337 44-232 (302)
204 TIGR02639 ClpA ATP-dependent C 97.0 0.0052 1.1E-07 72.9 11.9 113 161-286 453-578 (731)
205 TIGR03345 VI_ClpV1 type VI sec 96.9 0.0049 1.1E-07 73.7 11.7 129 162-300 566-718 (852)
206 COG0542 clpA ATP-binding subun 96.9 0.0071 1.5E-07 69.7 12.3 116 162-287 491-619 (786)
207 PRK08939 primosomal protein Dn 96.9 0.0059 1.3E-07 64.0 10.8 118 166-300 135-260 (306)
208 PF13177 DNA_pol3_delta2: DNA 96.9 0.02 4.4E-07 54.0 13.5 138 166-319 1-162 (162)
209 PF02562 PhoH: PhoH-like prote 96.9 0.0069 1.5E-07 59.0 10.2 127 167-301 5-156 (205)
210 CHL00095 clpC Clp protease ATP 96.9 0.0048 1.1E-07 74.0 10.8 130 162-301 509-662 (821)
211 PF13207 AAA_17: AAA domain; P 96.9 0.00094 2E-08 59.8 3.6 23 187-209 1-23 (121)
212 KOG3665 ZYG-1-like serine/thre 96.8 0.00044 9.4E-09 80.2 1.5 127 629-757 121-261 (699)
213 CHL00195 ycf46 Ycf46; Provisio 96.8 0.052 1.1E-06 60.5 17.6 148 161-328 227-402 (489)
214 KOG1644 U2-associated snRNP A' 96.8 0.0022 4.8E-08 60.6 5.7 97 656-754 46-148 (233)
215 PRK08058 DNA polymerase III su 96.8 0.014 3.1E-07 62.1 12.6 143 163-328 6-179 (329)
216 TIGR00763 lon ATP-dependent pr 96.8 0.035 7.5E-07 66.3 16.9 52 162-213 320-375 (775)
217 COG1618 Predicted nucleotide k 96.8 0.0016 3.4E-08 59.4 4.1 35 186-220 6-41 (179)
218 PRK06964 DNA polymerase III su 96.7 0.081 1.8E-06 56.1 17.6 66 263-328 132-201 (342)
219 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.0068 1.5E-07 56.5 8.2 114 186-302 3-139 (159)
220 TIGR01425 SRP54_euk signal rec 96.7 0.049 1.1E-06 59.3 15.9 36 184-219 99-134 (429)
221 PF13671 AAA_33: AAA domain; P 96.7 0.006 1.3E-07 56.3 8.0 24 187-210 1-24 (143)
222 PRK10787 DNA-binding ATP-depen 96.7 0.044 9.5E-07 65.0 16.8 53 161-213 321-377 (784)
223 PRK11889 flhF flagellar biosyn 96.6 0.025 5.3E-07 60.2 12.7 37 184-220 240-276 (436)
224 PRK06696 uridine kinase; Valid 96.6 0.0035 7.5E-08 62.9 6.3 46 167-212 3-49 (223)
225 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0017 3.7E-08 68.3 4.1 48 163-210 52-103 (361)
226 PF07728 AAA_5: AAA domain (dy 96.6 0.0021 4.6E-08 59.1 4.3 22 188-209 2-23 (139)
227 PRK06762 hypothetical protein; 96.6 0.0095 2.1E-07 56.7 8.9 24 186-209 3-26 (166)
228 PRK00771 signal recognition pa 96.6 0.022 4.8E-07 62.5 12.7 29 184-212 94-122 (437)
229 PRK10733 hflB ATP-dependent me 96.6 0.036 7.8E-07 64.6 15.2 177 163-359 153-366 (644)
230 PRK09361 radB DNA repair and r 96.6 0.0074 1.6E-07 60.7 8.4 48 173-220 11-58 (225)
231 PRK11034 clpA ATP-dependent Cl 96.6 0.01 2.2E-07 69.7 10.5 111 162-285 458-581 (758)
232 KOG0744 AAA+-type ATPase [Post 96.6 0.019 4.1E-07 58.3 10.6 79 185-274 177-261 (423)
233 PRK07667 uridine kinase; Provi 96.6 0.0044 9.6E-08 60.5 6.2 42 171-212 3-44 (193)
234 PRK06871 DNA polymerase III su 96.6 0.06 1.3E-06 56.7 14.9 151 171-328 11-176 (325)
235 cd01120 RecA-like_NTPases RecA 96.5 0.02 4.3E-07 53.9 10.5 34 187-220 1-34 (165)
236 PRK07261 topology modulation p 96.5 0.0097 2.1E-07 56.8 8.2 23 187-209 2-24 (171)
237 COG0470 HolB ATPase involved i 96.5 0.031 6.8E-07 59.6 12.6 142 163-321 2-171 (325)
238 KOG1644 U2-associated snRNP A' 96.4 0.0061 1.3E-07 57.8 5.9 98 608-709 44-150 (233)
239 PRK10867 signal recognition pa 96.4 0.13 2.8E-06 56.4 17.1 29 184-212 99-127 (433)
240 PRK08769 DNA polymerase III su 96.4 0.12 2.6E-06 54.3 16.2 166 170-339 12-205 (319)
241 COG2607 Predicted ATPase (AAA+ 96.4 0.066 1.4E-06 52.3 12.8 102 159-286 57-165 (287)
242 COG2255 RuvB Holliday junction 96.4 0.0037 7.9E-08 62.4 4.5 54 159-212 23-79 (332)
243 cd01858 NGP_1 NGP-1. Autoanti 96.4 0.027 5.8E-07 53.0 10.4 124 32-208 1-125 (157)
244 KOG0741 AAA+-type ATPase [Post 96.4 0.015 3.3E-07 62.6 9.3 126 184-327 537-682 (744)
245 PLN00020 ribulose bisphosphate 96.4 0.011 2.5E-07 61.9 8.2 30 183-212 146-175 (413)
246 PRK12724 flagellar biosynthesi 96.4 0.079 1.7E-06 57.2 14.7 25 185-209 223-247 (432)
247 KOG0735 AAA+-type ATPase [Post 96.4 0.016 3.5E-07 64.7 9.6 75 184-274 430-505 (952)
248 COG3267 ExeA Type II secretory 96.4 0.15 3.3E-06 50.5 15.3 159 164-328 30-210 (269)
249 COG0488 Uup ATPase components 96.4 0.11 2.3E-06 58.6 16.3 59 256-317 450-511 (530)
250 PF14532 Sigma54_activ_2: Sigm 96.4 0.0029 6.2E-08 58.2 3.3 107 165-301 1-110 (138)
251 KOG2739 Leucine-rich acidic nu 96.4 0.0017 3.8E-08 64.0 1.9 104 652-757 43-154 (260)
252 TIGR02237 recomb_radB DNA repa 96.3 0.011 2.3E-07 58.8 7.6 38 183-220 10-47 (209)
253 PRK14974 cell division protein 96.3 0.056 1.2E-06 57.2 13.1 29 184-212 139-167 (336)
254 PRK07993 DNA polymerase III su 96.2 0.09 1.9E-06 55.9 14.0 138 170-328 10-177 (334)
255 PRK08699 DNA polymerase III su 96.2 0.085 1.9E-06 55.8 13.7 63 266-328 116-182 (325)
256 PF13238 AAA_18: AAA domain; P 96.2 0.0041 8.9E-08 56.1 3.4 22 188-209 1-22 (129)
257 cd01394 radB RadB. The archaea 96.2 0.019 4.2E-07 57.3 8.4 49 172-220 6-54 (218)
258 PRK05703 flhF flagellar biosyn 96.1 0.14 3E-06 56.4 15.5 36 185-220 221-258 (424)
259 TIGR00064 ftsY signal recognit 96.1 0.025 5.4E-07 58.3 9.2 38 183-220 70-107 (272)
260 cd01123 Rad51_DMC1_radA Rad51_ 96.1 0.017 3.6E-07 58.5 7.9 47 174-220 8-60 (235)
261 cd01393 recA_like RecA is a b 96.1 0.023 5E-07 57.1 8.9 48 173-220 7-60 (226)
262 KOG1514 Origin recognition com 96.1 0.042 9.2E-07 61.6 11.2 183 160-347 394-608 (767)
263 COG2812 DnaX DNA polymerase II 96.1 0.14 3.1E-06 56.8 15.3 176 161-348 15-212 (515)
264 PRK05541 adenylylsulfate kinas 96.1 0.0072 1.6E-07 58.2 4.8 36 185-220 7-42 (176)
265 TIGR00959 ffh signal recogniti 96.1 0.069 1.5E-06 58.5 12.8 27 184-210 98-124 (428)
266 KOG4341 F-box protein containi 96.1 0.00038 8.2E-09 72.6 -4.5 184 576-760 213-415 (483)
267 COG0466 Lon ATP-dependent Lon 96.1 0.0071 1.5E-07 67.9 4.9 150 161-327 322-504 (782)
268 KOG0733 Nuclear AAA ATPase (VC 96.0 0.014 2.9E-07 64.2 6.8 52 161-212 189-250 (802)
269 PF00485 PRK: Phosphoribulokin 96.0 0.0061 1.3E-07 59.7 4.0 26 187-212 1-26 (194)
270 cd01129 PulE-GspE PulE/GspE Th 96.0 0.034 7.4E-07 57.1 9.6 102 170-284 68-170 (264)
271 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.032 7E-07 51.6 8.6 103 186-306 27-132 (144)
272 TIGR03574 selen_PSTK L-seryl-t 96.0 0.03 6.5E-07 57.2 9.0 25 188-212 2-26 (249)
273 TIGR01359 UMP_CMP_kin_fam UMP- 96.0 0.043 9.3E-07 53.1 9.7 23 187-209 1-23 (183)
274 PRK04296 thymidine kinase; Pro 96.0 0.022 4.8E-07 55.4 7.6 108 186-303 3-118 (190)
275 PRK06067 flagellar accessory p 96.0 0.049 1.1E-06 55.1 10.3 48 173-220 13-60 (234)
276 COG5238 RNA1 Ran GTPase-activa 95.9 0.0022 4.8E-08 63.2 0.3 14 534-547 30-43 (388)
277 cd02027 APSK Adenosine 5'-phos 95.9 0.073 1.6E-06 49.5 10.4 24 187-210 1-24 (149)
278 TIGR01420 pilT_fam pilus retra 95.9 0.021 4.5E-07 61.2 7.6 110 186-304 123-233 (343)
279 PRK15455 PrkA family serine pr 95.9 0.0089 1.9E-07 66.3 4.7 50 163-212 77-130 (644)
280 PF13604 AAA_30: AAA domain; P 95.9 0.036 7.8E-07 54.2 8.6 117 170-303 6-133 (196)
281 COG0572 Udk Uridine kinase [Nu 95.8 0.011 2.3E-07 57.6 4.5 30 183-212 6-35 (218)
282 PF10443 RNA12: RNA12 protein; 95.8 0.48 1E-05 51.0 17.1 39 167-207 1-40 (431)
283 PF01583 APS_kinase: Adenylyls 95.8 0.013 2.8E-07 54.4 4.7 35 186-220 3-37 (156)
284 cd03238 ABC_UvrA The excision 95.7 0.066 1.4E-06 51.2 9.5 22 186-207 22-43 (176)
285 KOG2739 Leucine-rich acidic nu 95.7 0.0067 1.5E-07 59.9 2.7 41 601-641 60-102 (260)
286 PF07726 AAA_3: ATPase family 95.7 0.006 1.3E-07 54.0 2.0 29 188-216 2-30 (131)
287 PTZ00301 uridine kinase; Provi 95.7 0.01 2.3E-07 58.4 3.9 30 185-214 3-32 (210)
288 cd02019 NK Nucleoside/nucleoti 95.6 0.0092 2E-07 47.3 2.8 23 187-209 1-23 (69)
289 PRK05480 uridine/cytidine kina 95.6 0.011 2.3E-07 58.7 3.9 27 183-209 4-30 (209)
290 cd03223 ABCD_peroxisomal_ALDP 95.6 0.089 1.9E-06 50.0 10.0 125 186-315 28-160 (166)
291 COG4608 AppF ABC-type oligopep 95.6 0.038 8.2E-07 55.5 7.5 119 186-308 40-177 (268)
292 PRK13531 regulatory ATPase Rav 95.6 0.014 3E-07 63.9 4.8 45 163-211 21-65 (498)
293 PRK03839 putative kinase; Prov 95.6 0.0096 2.1E-07 57.5 3.3 24 187-210 2-25 (180)
294 PRK04040 adenylate kinase; Pro 95.6 0.013 2.9E-07 56.8 4.2 25 186-210 3-27 (188)
295 KOG2228 Origin recognition com 95.6 0.12 2.7E-06 53.0 11.0 168 160-328 22-216 (408)
296 COG3854 SpoIIIAA ncharacterize 95.5 0.087 1.9E-06 51.1 9.3 109 186-299 138-251 (308)
297 PRK00625 shikimate kinase; Pro 95.5 0.01 2.2E-07 56.6 3.2 24 187-210 2-25 (173)
298 cd00983 recA RecA is a bacter 95.5 0.029 6.2E-07 58.8 6.7 48 173-220 42-90 (325)
299 KOG2004 Mitochondrial ATP-depe 95.5 0.015 3.3E-07 65.0 4.7 53 161-213 410-466 (906)
300 PF08433 KTI12: Chromatin asso 95.5 0.041 8.9E-07 56.5 7.7 27 186-212 2-28 (270)
301 COG4088 Predicted nucleotide k 95.5 0.029 6.4E-07 53.3 5.9 29 186-214 2-30 (261)
302 TIGR02012 tigrfam_recA protein 95.5 0.052 1.1E-06 56.8 8.5 48 173-220 42-90 (321)
303 cd01857 HSR1_MMR1 HSR1/MMR1. 95.5 0.14 3E-06 47.1 10.6 52 30-83 2-53 (141)
304 TIGR00708 cobA cob(I)alamin ad 95.5 0.11 2.5E-06 49.0 9.9 112 185-301 5-140 (173)
305 PRK09270 nucleoside triphospha 95.5 0.02 4.4E-07 57.6 5.4 32 182-213 30-61 (229)
306 PF00910 RNA_helicase: RNA hel 95.5 0.0083 1.8E-07 52.3 2.2 26 188-213 1-26 (107)
307 PRK08233 hypothetical protein; 95.5 0.012 2.6E-07 56.9 3.5 26 185-210 3-28 (182)
308 cd03247 ABCC_cytochrome_bd The 95.5 0.11 2.4E-06 50.0 10.2 123 186-315 29-169 (178)
309 cd01121 Sms Sms (bacterial rad 95.4 0.097 2.1E-06 56.4 10.5 49 172-220 69-117 (372)
310 PRK04132 replication factor C 95.4 0.77 1.7E-05 54.5 18.5 120 193-328 574-699 (846)
311 cd03214 ABC_Iron-Siderophores_ 95.4 0.11 2.4E-06 50.0 10.0 116 186-305 26-162 (180)
312 cd03228 ABCC_MRP_Like The MRP 95.4 0.14 3E-06 48.9 10.5 122 186-315 29-167 (171)
313 cd03222 ABC_RNaseL_inhibitor T 95.4 0.078 1.7E-06 50.8 8.6 105 186-306 26-137 (177)
314 PRK10416 signal recognition pa 95.4 0.05 1.1E-06 57.4 8.0 29 184-212 113-141 (318)
315 KOG0728 26S proteasome regulat 95.4 0.23 4.9E-06 48.7 11.6 143 163-328 147-328 (404)
316 PRK06217 hypothetical protein; 95.4 0.077 1.7E-06 51.3 8.8 23 187-209 3-25 (183)
317 cd03240 ABC_Rad50 The catalyti 95.4 0.11 2.3E-06 51.3 9.9 59 256-316 132-196 (204)
318 PRK11608 pspF phage shock prot 95.4 0.044 9.6E-07 58.3 7.6 47 162-208 6-52 (326)
319 cd03216 ABC_Carb_Monos_I This 95.3 0.038 8.2E-07 52.3 6.4 115 186-305 27-146 (163)
320 PRK12723 flagellar biosynthesi 95.3 0.18 3.9E-06 54.5 12.0 27 184-210 173-199 (388)
321 PRK05022 anaerobic nitric oxid 95.3 0.2 4.3E-06 57.0 13.1 51 160-210 185-235 (509)
322 COG0468 RecA RecA/RadA recombi 95.3 0.073 1.6E-06 54.5 8.5 49 174-222 49-97 (279)
323 PRK09280 F0F1 ATP synthase sub 95.3 0.049 1.1E-06 59.6 7.7 86 186-274 145-249 (463)
324 TIGR02858 spore_III_AA stage I 95.3 0.066 1.4E-06 54.9 8.3 117 183-305 109-233 (270)
325 KOG2123 Uncharacterized conser 95.3 0.0012 2.6E-08 65.2 -4.1 98 605-705 18-123 (388)
326 TIGR00235 udk uridine kinase. 95.3 0.019 4.1E-07 56.9 4.2 27 184-210 5-31 (207)
327 PRK15429 formate hydrogenlyase 95.2 0.063 1.4E-06 63.5 9.2 48 162-209 376-423 (686)
328 KOG0729 26S proteasome regulat 95.2 0.18 4E-06 49.7 10.6 119 162-303 177-328 (435)
329 PF00006 ATP-synt_ab: ATP synt 95.2 0.025 5.4E-07 55.8 4.8 82 187-274 17-116 (215)
330 PRK09354 recA recombinase A; P 95.2 0.038 8.2E-07 58.4 6.4 48 173-220 47-95 (349)
331 KOG0730 AAA+-type ATPase [Post 95.2 0.5 1.1E-05 53.1 15.1 156 162-337 434-620 (693)
332 cd03246 ABCC_Protease_Secretio 95.2 0.12 2.6E-06 49.4 9.5 122 186-315 29-168 (173)
333 PTZ00088 adenylate kinase 1; P 95.2 0.069 1.5E-06 53.4 7.9 22 188-209 9-30 (229)
334 PRK14722 flhF flagellar biosyn 95.2 0.1 2.2E-06 55.9 9.6 36 185-220 137-174 (374)
335 COG5635 Predicted NTPase (NACH 95.2 0.14 3E-06 61.8 11.8 134 186-321 223-368 (824)
336 PRK13947 shikimate kinase; Pro 95.2 0.015 3.4E-07 55.5 3.1 25 187-211 3-27 (171)
337 PRK12678 transcription termina 95.1 0.052 1.1E-06 60.2 7.4 88 186-276 417-516 (672)
338 PRK06547 hypothetical protein; 95.1 0.02 4.3E-07 54.6 3.7 27 183-209 13-39 (172)
339 TIGR00150 HI0065_YjeE ATPase, 95.1 0.03 6.4E-07 50.5 4.5 40 170-209 7-46 (133)
340 PF00437 T2SE: Type II/IV secr 95.1 0.023 4.9E-07 58.9 4.4 129 162-302 104-233 (270)
341 cd02028 UMPK_like Uridine mono 95.1 0.025 5.4E-07 54.5 4.3 26 187-212 1-26 (179)
342 PRK00131 aroK shikimate kinase 95.1 0.018 3.9E-07 55.1 3.4 25 185-209 4-28 (175)
343 TIGR01360 aden_kin_iso1 adenyl 95.1 0.019 4.1E-07 55.8 3.5 26 184-209 2-27 (188)
344 TIGR03600 phage_DnaB phage rep 95.1 0.74 1.6E-05 51.0 16.5 72 164-243 174-246 (421)
345 cd03115 SRP The signal recogni 95.0 0.067 1.4E-06 51.2 7.2 26 187-212 2-27 (173)
346 PRK12597 F0F1 ATP synthase sub 95.0 0.065 1.4E-06 58.9 7.8 85 186-274 144-248 (461)
347 PRK12727 flagellar biosynthesi 95.0 0.13 2.9E-06 57.0 10.1 47 166-212 327-377 (559)
348 PF07724 AAA_2: AAA domain (Cd 95.0 0.03 6.4E-07 53.4 4.5 41 185-226 3-44 (171)
349 PRK04301 radA DNA repair and r 95.0 0.075 1.6E-06 56.4 8.0 48 173-220 90-143 (317)
350 cd03281 ABC_MSH5_euk MutS5 hom 95.0 0.053 1.1E-06 53.8 6.4 24 185-208 29-52 (213)
351 PF03205 MobB: Molybdopterin g 95.0 0.041 8.9E-07 50.5 5.2 35 186-220 1-36 (140)
352 TIGR01039 atpD ATP synthase, F 95.0 0.077 1.7E-06 57.9 8.0 87 186-275 144-249 (461)
353 TIGR00390 hslU ATP-dependent p 94.9 0.03 6.5E-07 60.1 4.8 50 162-211 12-73 (441)
354 KOG0734 AAA+-type ATPase conta 94.9 0.12 2.6E-06 56.2 9.1 112 162-296 304-442 (752)
355 PF03308 ArgK: ArgK protein; 94.9 0.071 1.5E-06 53.2 7.0 42 171-212 15-56 (266)
356 cd03232 ABC_PDR_domain2 The pl 94.9 0.14 3.1E-06 49.9 9.2 23 186-208 34-56 (192)
357 PF03969 AFG1_ATPase: AFG1-lik 94.9 0.068 1.5E-06 57.3 7.4 102 184-301 61-167 (362)
358 PF00406 ADK: Adenylate kinase 94.9 0.058 1.2E-06 50.3 6.1 86 190-283 1-94 (151)
359 TIGR02524 dot_icm_DotB Dot/Icm 94.9 0.046 9.9E-07 58.6 6.1 97 185-284 134-233 (358)
360 cd01122 GP4d_helicase GP4d_hel 94.9 0.29 6.4E-06 50.6 12.1 36 185-220 30-66 (271)
361 PRK00889 adenylylsulfate kinas 94.8 0.04 8.6E-07 52.9 4.9 27 185-211 4-30 (175)
362 PF08423 Rad51: Rad51; InterP 94.8 0.066 1.4E-06 54.7 6.8 48 173-220 26-79 (256)
363 PRK05986 cob(I)alamin adenolsy 94.8 0.21 4.6E-06 47.9 9.6 115 184-301 21-158 (191)
364 cd01125 repA Hexameric Replica 94.8 0.41 8.9E-06 48.5 12.5 24 187-210 3-26 (239)
365 PRK03846 adenylylsulfate kinas 94.8 0.043 9.3E-07 53.9 5.1 38 183-220 22-59 (198)
366 cd02024 NRK1 Nicotinamide ribo 94.8 0.021 4.5E-07 55.1 2.7 23 187-209 1-23 (187)
367 KOG1970 Checkpoint RAD17-RFC c 94.8 0.12 2.6E-06 56.5 8.6 42 168-209 88-134 (634)
368 TIGR02974 phageshock_pspF psp 94.7 0.11 2.4E-06 55.2 8.5 46 164-209 1-46 (329)
369 cd00227 CPT Chloramphenicol (C 94.7 0.027 5.8E-07 54.1 3.5 25 186-210 3-27 (175)
370 TIGR02238 recomb_DMC1 meiotic 94.7 0.093 2E-06 55.2 7.8 48 173-220 84-137 (313)
371 KOG1051 Chaperone HSP104 and r 94.7 0.28 6.1E-06 57.8 12.2 102 162-276 562-673 (898)
372 KOG1969 DNA replication checkp 94.7 0.08 1.7E-06 59.7 7.4 75 183-276 324-400 (877)
373 COG4618 ArpD ABC-type protease 94.7 0.19 4.1E-06 54.6 9.9 21 187-207 364-384 (580)
374 COG2884 FtsE Predicted ATPase 94.7 0.27 5.8E-06 46.6 9.7 56 253-308 145-204 (223)
375 KOG0780 Signal recognition par 94.7 1.5 3.3E-05 46.1 16.0 30 183-212 99-128 (483)
376 KOG0727 26S proteasome regulat 94.7 0.043 9.3E-07 53.6 4.6 52 162-213 155-217 (408)
377 cd03230 ABC_DR_subfamily_A Thi 94.7 0.18 3.8E-06 48.3 9.1 122 186-315 27-168 (173)
378 PRK13949 shikimate kinase; Pro 94.6 0.025 5.5E-07 53.8 3.1 24 187-210 3-26 (169)
379 COG1428 Deoxynucleoside kinase 94.6 0.027 5.9E-07 54.1 3.2 26 185-210 4-29 (216)
380 PRK05201 hslU ATP-dependent pr 94.6 0.043 9.4E-07 59.0 5.0 50 162-211 15-76 (443)
381 cd00267 ABC_ATPase ABC (ATP-bi 94.6 0.099 2.1E-06 49.1 7.0 124 186-315 26-153 (157)
382 cd01130 VirB11-like_ATPase Typ 94.6 0.041 8.8E-07 53.4 4.5 92 186-282 26-119 (186)
383 PRK05439 pantothenate kinase; 94.6 0.05 1.1E-06 56.7 5.3 30 182-211 83-112 (311)
384 KOG0651 26S proteasome regulat 94.6 0.16 3.6E-06 51.5 8.6 29 185-213 166-194 (388)
385 PRK14528 adenylate kinase; Pro 94.6 0.17 3.7E-06 49.0 8.8 24 186-209 2-25 (186)
386 CHL00206 ycf2 Ycf2; Provisiona 94.6 0.56 1.2E-05 59.2 14.6 97 261-357 1730-1849(2281)
387 cd02023 UMPK Uridine monophosp 94.5 0.024 5.2E-07 55.7 2.6 23 187-209 1-23 (198)
388 cd02020 CMPK Cytidine monophos 94.5 0.028 6E-07 52.1 2.9 23 187-209 1-23 (147)
389 PF13481 AAA_25: AAA domain; P 94.5 0.17 3.6E-06 49.3 8.6 25 187-211 34-58 (193)
390 cd02025 PanK Pantothenate kina 94.5 0.026 5.7E-07 56.3 2.8 24 187-210 1-24 (220)
391 cd03283 ABC_MutS-like MutS-lik 94.5 0.23 5.1E-06 48.6 9.5 23 186-208 26-48 (199)
392 PRK11823 DNA repair protein Ra 94.5 0.24 5.1E-06 55.1 10.5 49 172-220 67-115 (446)
393 KOG1532 GTPase XAB1, interacts 94.4 0.048 1E-06 54.1 4.4 32 184-215 18-49 (366)
394 cd00464 SK Shikimate kinase (S 94.4 0.031 6.8E-07 52.2 3.2 22 188-209 2-23 (154)
395 TIGR00455 apsK adenylylsulfate 94.4 0.26 5.6E-06 47.7 9.7 26 185-210 18-43 (184)
396 COG0542 clpA ATP-binding subun 94.4 0.051 1.1E-06 62.9 5.3 151 161-328 169-343 (786)
397 PRK00279 adk adenylate kinase; 94.4 0.18 3.9E-06 50.1 8.7 23 187-209 2-24 (215)
398 COG1936 Predicted nucleotide k 94.4 0.029 6.2E-07 52.1 2.6 20 187-206 2-21 (180)
399 PRK13948 shikimate kinase; Pro 94.4 0.031 6.6E-07 53.8 2.9 27 184-210 9-35 (182)
400 COG1120 FepC ABC-type cobalami 94.4 0.089 1.9E-06 53.0 6.3 22 186-207 29-50 (258)
401 cd00071 GMPK Guanosine monopho 94.4 0.027 5.8E-07 51.6 2.4 25 188-212 2-26 (137)
402 cd01135 V_A-ATPase_B V/A-type 94.3 0.18 3.9E-06 51.4 8.4 87 186-276 70-179 (276)
403 PRK13946 shikimate kinase; Pro 94.3 0.032 7E-07 54.0 3.1 25 185-209 10-34 (184)
404 TIGR02322 phosphon_PhnN phosph 94.3 0.035 7.6E-07 53.5 3.3 25 186-210 2-26 (179)
405 cd00544 CobU Adenosylcobinamid 94.3 0.47 1E-05 45.0 10.9 76 188-272 2-82 (169)
406 cd02021 GntK Gluconate kinase 94.3 0.03 6.5E-07 52.2 2.7 22 187-208 1-22 (150)
407 PTZ00494 tuzin-like protein; P 94.3 9.5 0.00021 41.4 21.6 205 112-328 302-541 (664)
408 PF03266 NTPase_1: NTPase; In 94.3 0.047 1E-06 51.8 4.0 24 188-211 2-25 (168)
409 COG1066 Sms Predicted ATP-depe 94.3 0.27 5.9E-06 52.1 9.8 94 171-273 79-178 (456)
410 PRK10751 molybdopterin-guanine 94.3 0.05 1.1E-06 51.6 4.1 28 184-211 5-32 (173)
411 COG1102 Cmk Cytidylate kinase 94.3 0.037 8E-07 50.7 2.9 24 187-210 2-25 (179)
412 PF00158 Sigma54_activat: Sigm 94.2 0.04 8.6E-07 52.3 3.4 45 164-208 1-45 (168)
413 COG1703 ArgK Putative periplas 94.2 0.096 2.1E-06 53.1 6.1 48 172-219 38-85 (323)
414 COG1121 ZnuC ABC-type Mn/Zn tr 94.2 0.091 2E-06 52.7 6.0 51 254-306 148-204 (254)
415 TIGR03499 FlhF flagellar biosy 94.2 0.1 2.3E-06 54.2 6.7 37 184-220 193-231 (282)
416 PRK08972 fliI flagellum-specif 94.2 0.082 1.8E-06 57.4 6.0 84 186-275 163-264 (444)
417 PRK15453 phosphoribulokinase; 94.2 0.071 1.5E-06 54.3 5.1 29 183-211 3-31 (290)
418 PF00560 LRR_1: Leucine Rich R 94.2 0.02 4.2E-07 33.9 0.7 19 725-743 2-20 (22)
419 cd01132 F1_ATPase_alpha F1 ATP 94.1 0.14 3E-06 52.1 7.2 85 186-275 70-173 (274)
420 KOG0743 AAA+-type ATPase [Post 94.1 0.66 1.4E-05 49.9 12.4 25 185-209 235-259 (457)
421 PRK12339 2-phosphoglycerate ki 94.1 0.045 9.8E-07 53.4 3.6 25 185-209 3-27 (197)
422 PRK14529 adenylate kinase; Pro 94.1 0.3 6.5E-06 48.5 9.3 91 188-282 3-96 (223)
423 TIGR02788 VirB11 P-type DNA tr 94.1 0.087 1.9E-06 55.6 5.9 112 185-303 144-255 (308)
424 TIGR03878 thermo_KaiC_2 KaiC d 94.1 0.078 1.7E-06 54.4 5.4 37 184-220 35-71 (259)
425 TIGR02782 TrbB_P P-type conjug 94.1 0.28 6E-06 51.4 9.6 88 186-281 133-222 (299)
426 TIGR02640 gas_vesic_GvpN gas v 94.1 0.064 1.4E-06 55.2 4.8 36 170-209 10-45 (262)
427 cd03289 ABCC_CFTR2 The CFTR su 94.1 0.32 7E-06 50.3 10.0 31 187-219 32-62 (275)
428 TIGR03305 alt_F1F0_F1_bet alte 94.1 0.11 2.4E-06 56.8 6.7 86 186-275 139-244 (449)
429 COG0703 AroK Shikimate kinase 94.0 0.044 9.6E-07 51.4 3.2 27 187-213 4-30 (172)
430 TIGR03596 GTPase_YlqF ribosome 94.0 0.4 8.6E-06 49.7 10.6 49 29-83 11-59 (276)
431 COG0467 RAD55 RecA-superfamily 94.0 0.093 2E-06 54.0 5.9 40 181-220 19-58 (260)
432 PF06309 Torsin: Torsin; Inte 94.0 0.1 2.2E-06 46.2 5.2 46 163-208 26-76 (127)
433 COG3640 CooC CO dehydrogenase 94.0 0.081 1.7E-06 51.7 4.9 35 187-221 2-36 (255)
434 PF00154 RecA: recA bacterial 94.0 0.17 3.6E-06 53.0 7.6 49 172-220 39-88 (322)
435 PRK10463 hydrogenase nickel in 94.0 0.1 2.3E-06 53.6 6.0 36 183-218 102-137 (290)
436 COG0563 Adk Adenylate kinase a 94.0 0.043 9.4E-07 52.5 3.0 23 187-209 2-24 (178)
437 PRK05342 clpX ATP-dependent pr 94.0 0.074 1.6E-06 58.1 5.2 49 163-211 72-134 (412)
438 cd03217 ABC_FeS_Assembly ABC-t 93.9 0.25 5.4E-06 48.5 8.5 23 186-208 27-49 (200)
439 PF00625 Guanylate_kin: Guanyl 93.9 0.051 1.1E-06 52.6 3.6 36 185-220 2-37 (183)
440 PRK05057 aroK shikimate kinase 93.9 0.045 9.7E-07 52.3 3.1 24 186-209 5-28 (172)
441 COG0714 MoxR-like ATPases [Gen 93.9 0.08 1.7E-06 56.5 5.4 49 163-215 25-73 (329)
442 PLN03187 meiotic recombination 93.9 0.17 3.6E-06 53.8 7.6 48 173-220 114-167 (344)
443 cd03213 ABCG_EPDR ABCG transpo 93.9 0.34 7.3E-06 47.3 9.3 24 186-209 36-59 (194)
444 TIGR00416 sms DNA repair prote 93.9 0.16 3.4E-06 56.5 7.7 50 171-220 80-129 (454)
445 PRK13975 thymidylate kinase; P 93.9 0.052 1.1E-06 53.1 3.6 26 186-211 3-28 (196)
446 COG0464 SpoVK ATPases of the A 93.9 0.35 7.6E-06 54.9 10.8 152 162-332 242-424 (494)
447 TIGR01069 mutS2 MutS2 family p 93.9 0.2 4.4E-06 59.4 8.9 167 185-363 322-522 (771)
448 PRK14530 adenylate kinase; Pro 93.9 0.046 1E-06 54.4 3.2 23 187-209 5-27 (215)
449 PRK13768 GTPase; Provisional 93.8 0.08 1.7E-06 54.1 5.0 34 186-219 3-36 (253)
450 COG1875 NYN ribonuclease and A 93.8 0.27 5.9E-06 51.2 8.5 41 164-206 226-266 (436)
451 PTZ00035 Rad51 protein; Provis 93.8 0.19 4.2E-06 53.5 7.8 49 172-220 105-159 (337)
452 PRK14493 putative bifunctional 93.8 0.075 1.6E-06 54.6 4.6 34 186-220 2-35 (274)
453 TIGR01351 adk adenylate kinase 93.8 0.2 4.4E-06 49.6 7.6 22 188-209 2-23 (210)
454 PF06068 TIP49: TIP49 C-termin 93.8 0.12 2.6E-06 54.3 6.0 67 159-227 21-90 (398)
455 PLN02318 phosphoribulokinase/u 93.8 0.068 1.5E-06 59.8 4.5 33 177-209 57-89 (656)
456 COG5238 RNA1 Ran GTPase-activa 93.8 0.06 1.3E-06 53.4 3.6 155 602-757 88-283 (388)
457 PRK14738 gmk guanylate kinase; 93.8 0.057 1.2E-06 53.3 3.6 29 180-208 8-36 (206)
458 PRK08927 fliI flagellum-specif 93.7 0.19 4.1E-06 54.9 7.7 83 186-274 159-259 (442)
459 COG2019 AdkA Archaeal adenylat 93.7 0.063 1.4E-06 49.4 3.4 25 185-209 4-28 (189)
460 PRK09435 membrane ATPase/prote 93.7 0.15 3.3E-06 53.8 6.9 40 173-212 44-83 (332)
461 PF13086 AAA_11: AAA domain; P 93.7 0.23 5E-06 49.8 8.1 37 169-209 5-41 (236)
462 cd03282 ABC_MSH4_euk MutS4 hom 93.7 0.37 8E-06 47.4 9.2 113 185-308 29-158 (204)
463 COG0003 ArsA Predicted ATPase 93.7 0.1 2.2E-06 54.7 5.5 36 185-220 2-37 (322)
464 COG0541 Ffh Signal recognition 93.7 5 0.00011 43.3 17.9 40 172-211 80-126 (451)
465 TIGR01313 therm_gnt_kin carboh 93.7 0.043 9.3E-07 51.9 2.5 22 188-209 1-22 (163)
466 TIGR02236 recomb_radA DNA repa 93.7 0.2 4.4E-06 53.0 7.8 47 174-220 84-136 (310)
467 TIGR00176 mobB molybdopterin-g 93.6 0.079 1.7E-06 49.6 4.1 31 187-217 1-32 (155)
468 CHL00060 atpB ATP synthase CF1 93.6 0.18 3.9E-06 55.5 7.4 85 186-274 162-273 (494)
469 PRK03731 aroL shikimate kinase 93.6 0.054 1.2E-06 51.7 3.1 23 187-209 4-26 (171)
470 PLN03186 DNA repair protein RA 93.6 0.22 4.8E-06 52.9 7.9 49 172-220 110-164 (342)
471 KOG0738 AAA+-type ATPase [Post 93.6 0.13 2.8E-06 53.8 5.8 72 134-210 189-270 (491)
472 cd03287 ABC_MSH3_euk MutS3 hom 93.6 0.12 2.7E-06 51.3 5.7 112 185-306 31-159 (222)
473 TIGR03877 thermo_KaiC_1 KaiC d 93.6 0.14 3.1E-06 51.8 6.2 48 173-220 9-56 (237)
474 TIGR00554 panK_bact pantothena 93.6 0.074 1.6E-06 55.1 4.1 28 183-210 60-87 (290)
475 TIGR03263 guanyl_kin guanylate 93.5 0.049 1.1E-06 52.5 2.7 24 186-209 2-25 (180)
476 TIGR03881 KaiC_arch_4 KaiC dom 93.5 0.15 3.3E-06 51.3 6.3 48 173-220 8-55 (229)
477 KOG1947 Leucine rich repeat pr 93.5 0.0063 1.4E-07 68.8 -4.2 19 718-736 357-375 (482)
478 TIGR01650 PD_CobS cobaltochela 93.5 0.15 3.2E-06 53.4 6.3 48 162-213 45-92 (327)
479 PRK04182 cytidylate kinase; Pr 93.5 0.058 1.3E-06 51.9 3.2 23 187-209 2-24 (180)
480 PRK05537 bifunctional sulfate 93.5 0.11 2.4E-06 59.4 5.8 51 161-211 368-418 (568)
481 cd01983 Fer4_NifH The Fer4_Nif 93.5 0.087 1.9E-06 44.5 3.9 25 187-211 1-25 (99)
482 PRK08149 ATP synthase SpaL; Va 93.5 0.22 4.8E-06 54.3 7.8 83 186-274 152-252 (428)
483 PF03029 ATP_bind_1: Conserved 93.5 0.084 1.8E-06 53.2 4.3 23 190-212 1-23 (238)
484 TIGR01287 nifH nitrogenase iro 93.5 0.082 1.8E-06 54.9 4.4 27 186-212 1-27 (275)
485 PRK00300 gmk guanylate kinase; 93.4 0.058 1.3E-06 53.3 3.0 25 185-209 5-29 (205)
486 TIGR00073 hypB hydrogenase acc 93.4 0.11 2.4E-06 51.4 5.0 38 182-220 19-56 (207)
487 TIGR02525 plasmid_TraJ plasmid 93.4 0.24 5.2E-06 53.2 7.9 107 186-299 150-258 (372)
488 PRK07132 DNA polymerase III su 93.4 3.9 8.4E-05 42.7 16.5 140 172-328 6-159 (299)
489 PF08477 Miro: Miro-like prote 93.4 0.066 1.4E-06 47.4 3.1 21 188-208 2-22 (119)
490 PF01078 Mg_chelatase: Magnesi 93.4 0.12 2.5E-06 50.3 4.9 42 162-207 3-44 (206)
491 COG1224 TIP49 DNA helicase TIP 93.4 0.18 3.8E-06 52.3 6.3 59 159-217 36-97 (450)
492 KOG1947 Leucine rich repeat pr 93.4 0.0096 2.1E-07 67.3 -3.0 65 577-642 186-255 (482)
493 cd02034 CooC The accessory pro 93.4 0.12 2.6E-06 45.7 4.6 33 188-220 2-34 (116)
494 COG1124 DppF ABC-type dipeptid 93.3 0.072 1.6E-06 52.4 3.4 22 186-207 34-55 (252)
495 cd03243 ABC_MutS_homologs The 93.3 0.075 1.6E-06 52.3 3.7 22 186-207 30-51 (202)
496 TIGR00382 clpX endopeptidase C 93.3 0.11 2.4E-06 56.5 5.2 51 163-213 78-144 (413)
497 PF13521 AAA_28: AAA domain; P 93.3 0.065 1.4E-06 50.7 3.0 21 188-208 2-22 (163)
498 smart00534 MUTSac ATPase domai 93.3 0.054 1.2E-06 52.5 2.5 21 187-207 1-21 (185)
499 PRK14526 adenylate kinase; Pro 93.3 0.34 7.5E-06 47.8 8.2 22 188-209 3-24 (211)
500 PRK12726 flagellar biosynthesi 93.3 0.72 1.6E-05 49.2 10.9 37 184-220 205-241 (407)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.8e-116 Score=1072.69 Aligned_cols=750 Identities=37% Similarity=0.610 Sum_probs=644.8
Q ss_pred Eechhhhhhh------hhhhhcCCCCCCCcchHHHHHHHHhccceeEeecCCccCchhhHHHHHHHHHhhccCCcEEEeE
Q 041067 5 WNFQLKVYKV------AELIKRRGVHGGDEISKSLVNVIEASAISVIVFSEGYASSRSCLDELVKILECKKEYAQIVIPF 78 (770)
Q Consensus 5 ~~~~~~~~~~------~~~~d~~~~~~g~~~~~~l~~ai~~s~~~ivv~s~~y~~s~~cl~El~~i~~~~~~~~~~v~pv 78 (770)
.||+.++|+. .||+|+ ++++|+.|++++++||++|+|+|||||++||+|+|||+||++||+|+++.+++|+||
T Consensus 26 ~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~~~~~~~~~v~pv 104 (1153)
T PLN03210 26 ITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPV 104 (1153)
T ss_pred cCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHHHhhhhcCceEEEE
Confidence 5899999984 588865 799999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCccccccCcHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhHHHHhHhhhhhccccccccCC
Q 041067 79 FYRVDPSDVRNQTGSFGDSFSKLEERLKENTEKLRSWRKALKEAASLSGFLSLNIRHESEFINEVGNDILKRLDEVFRPR 158 (770)
Q Consensus 79 f~~v~p~~vr~~~~~~~~~f~~~~~~~~~~~~~v~~w~~al~~~a~~~g~~~~~~~~e~~~i~~i~~~i~~~~~~~~~~~ 158 (770)
||+|||+|||+|+|+|++||.+++++. ..+++++||+||++||+++||++..+++|+++|++|+++|..++.. +++
T Consensus 105 fy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~--~~~ 180 (1153)
T PLN03210 105 FYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNL--TPS 180 (1153)
T ss_pred EecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhcc--ccC
Confidence 999999999999999999999988753 5678999999999999999999988999999999999999999987 777
Q ss_pred CCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEec--chh---hcc-----
Q 041067 159 DNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENV--REE---SQR----- 228 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~--~~~---~~~----- 228 (770)
.+.+++|||+++++++..+|..+.+++++|+||||||+||||||+++|+++..+|+..+|+.+. ... ...
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccc
Confidence 8889999999999999999988888899999999999999999999999999999999998642 111 110
Q ss_pred CCCHHHHHHHHHHHHhcCCCCc-chHHHHHHHHCCCcEEEEEeCCCChHhHHHHHhcccCCCCCceEEEEcCchhhhhhc
Q 041067 229 SGGLSCLQQKLLSNLLKHKNVM-PFIDLIFRRLSRMKVLIVFDDVTCLSQLQSLIGSLYWLTPVSRIIITTRNKQVLRNW 307 (770)
Q Consensus 229 ~~~~~~l~~~ll~~~~~~~~~~-~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~ 307 (770)
......++++++.++....... .....++++|+++|+||||||||+.++|+.+.....|+++||+||||||+++++..+
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~ 340 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAH 340 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhc
Confidence 1012456667777766543322 234678899999999999999999999999999888999999999999999999888
Q ss_pred CcceEEEeCccChHHHHHHHH--------------------HhccCCCchhHHHHhhHhcCCCHHHHHHHHHHHHhccch
Q 041067 308 GVRKIYEMKALEYHHAIELFI--------------------MKYAQGVPLALKVLGCFLYEREKEVWESAIDKLQRILLA 367 (770)
Q Consensus 308 ~~~~~~~l~~L~~~ea~~Lf~--------------------~~~~~glPLal~~~g~~L~~~~~~~w~~~l~~l~~~~~~ 367 (770)
+.+.+|+++.|++++|++||+ +++|+|+|||++++|++|++++..+|++++++++..++.
T Consensus 341 ~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~ 420 (1153)
T PLN03210 341 GIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDG 420 (1153)
T ss_pred CCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccH
Confidence 888999999999999999997 899999999999999999999999999999999998888
Q ss_pred hHHHHHHHhHhcCCH-HHHHHHhhcccccCCCChhHHHHHHHhcCCCchhhHHHhhhccceeEecCCeEEecHHHHHHHH
Q 041067 368 SIFEVLKISYDSLDD-KEKNIFLDVACFFQGEDVDPVMKFFNASGFYPEIGMSVLVDKSLIAIDSYNKITMHDLLQELGK 446 (770)
Q Consensus 368 ~i~~~l~~sy~~L~~-~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~~~~L~~~sLi~~~~~~~~~mHdl~~~~~~ 446 (770)
+|.++|++||++|++ .+|.||+++||||.+++.+.+..++..+++.+..+++.|+++|||++. .+++.|||++|+||+
T Consensus 421 ~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r 499 (1153)
T PLN03210 421 KIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGK 499 (1153)
T ss_pred HHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHH
Confidence 999999999999986 589999999999999999998888888888888999999999999987 678999999999999
Q ss_pred HHHhhhccCCCCccccCchhhhhHhhhcccCceeEEEEEecCCcceeeecCcccccCCCCCceEEEecCCC------CCC
Q 041067 447 EIVRQESINPENRSRLWHHEDICEVLMYNTGTKKIEGICLDMSKVKEIHLNPSTFTKMPKLRFLKFYSSSF------NGE 520 (770)
Q Consensus 447 ~i~~~e~~~~~~~~~l~~~~d~~~~l~~~~~~~~i~~i~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l------~~~ 520 (770)
+++++++..|++++++|+++|+++++..++|+..+++|+++.+...++.+.+.+|.+|++|+.|.++++.. ...
T Consensus 500 ~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~ 579 (1153)
T PLN03210 500 EIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWH 579 (1153)
T ss_pred HHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceee
Confidence 99999988899999999999999999999999999999999999999999999999999999999986542 234
Q ss_pred ccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccccccccCcCCcEEccCcCcCccccCCCCC
Q 041067 521 NKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPM 600 (770)
Q Consensus 521 ~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~ 600 (770)
+|.++.++| .+||+|+|.+|+++++|+.+.+.+|++|++++|.++.+|.++..+++|+.|+|++|..+ ..+|+
T Consensus 580 lp~~~~~lp----~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l-~~ip~-- 652 (1153)
T PLN03210 580 LPEGFDYLP----PKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL-KEIPD-- 652 (1153)
T ss_pred cCcchhhcC----cccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCc-CcCCc--
Confidence 667888888 78999999999999999999999999999999999999999999999999999998877 77775
Q ss_pred CCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc-c---------------------CccEEe
Q 041067 601 LMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS-G---------------------NISWLF 658 (770)
Q Consensus 601 ~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~-~---------------------~L~~L~ 658 (770)
+.++++|+.|+|++|..+..+|..++++++|++|++++|..++.+|.... + +|++|+
T Consensus 653 -ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~ 731 (1153)
T PLN03210 653 -LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLD 731 (1153)
T ss_pred -cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeee
Confidence 45567777788877777777777777777777777777766666665432 2 455555
Q ss_pred ccCcCccccCcccc------------------------------cCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeec
Q 041067 659 LRETAIEELPSSIE------------------------------RLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSG 708 (770)
Q Consensus 659 l~~~~i~~lp~~i~------------------------------~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~ 708 (770)
+++|.+..+|..+. .+++|+.|++++|.....+|.+++++++|+.|++++
T Consensus 732 L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 732 LDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN 811 (1153)
T ss_pred cCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence 55566555554320 123566666666666666777777777777777777
Q ss_pred CCCCcccCcccCCC---------------------CCCcEEEccCCCCcccchhhhCCCCCcEEecccCccCCcCCCCCC
Q 041067 709 CSNLQRLPECLAQF---------------------SSPIILNLAKTNIERIPKSISQLLMLRYLLLSYSESLQSSPKPPF 767 (770)
Q Consensus 709 ~~~~~~lp~~l~~l---------------------~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~L~~lP~lp~ 767 (770)
|..++.+|..+ ++ ++|+.|+|++|.++.+|.++..+++|+.|++++|++|+.+|..+.
T Consensus 812 C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~ 890 (1153)
T PLN03210 812 CINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS 890 (1153)
T ss_pred CCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccc
Confidence 76666666543 22 356666666777778999999999999999999999999987655
Q ss_pred CC
Q 041067 768 RA 769 (770)
Q Consensus 768 ~l 769 (770)
+|
T Consensus 891 ~L 892 (1153)
T PLN03210 891 KL 892 (1153)
T ss_pred cc
Confidence 44
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-60 Score=549.17 Aligned_cols=430 Identities=26% Similarity=0.365 Sum_probs=324.9
Q ss_pred ccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHH---HhCCCCceEEEEecchhhccCCCHHHHHHHHHH
Q 041067 165 VGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDK---ISGDFEGSCFLENVREESQRSGGLSCLQQKLLS 241 (770)
Q Consensus 165 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 241 (770)
||.+..++++.+.|..++. .++||+||||+||||||+.++|+ ++.+|+..+||. +++.+ ....++++++.
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f-~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEF-TTRKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----Ecccc-cHHhHHHHHHH
Confidence 9999999999999975554 89999999999999999999986 678999999999 44455 88899999999
Q ss_pred HHhcCCCC------cchHHHHHHHHCCCcEEEEEeCCCChHhHHHHHhcccCCCCCceEEEEcCchhhhhh-cCcceEEE
Q 041067 242 NLLKHKNV------MPFIDLIFRRLSRMKVLIVFDDVTCLSQLQSLIGSLYWLTPVSRIIITTRNKQVLRN-WGVRKIYE 314 (770)
Q Consensus 242 ~~~~~~~~------~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~-~~~~~~~~ 314 (770)
.+...... .+.+..+.+.|+++||+|||||||+..+|+.+..+++....||+|++|||++.|+.. +++...++
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~ 313 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIE 313 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccc
Confidence 87653221 156778999999999999999999999999999999988899999999999999998 88889999
Q ss_pred eCccChHHHHHHHH---------------------HhccCCCchhHHHHhhHhcCC-CHHHHHHHHHHHHhc-----c--
Q 041067 315 MKALEYHHAIELFI---------------------MKYAQGVPLALKVLGCFLYER-EKEVWESAIDKLQRI-----L-- 365 (770)
Q Consensus 315 l~~L~~~ea~~Lf~---------------------~~~~~glPLal~~~g~~L~~~-~~~~w~~~l~~l~~~-----~-- 365 (770)
++.|+.+|||.||+ +++|+|+|||++++|+.|+.+ +..+|+.+.+.+.+. +
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~ 393 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGM 393 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCch
Confidence 99999999999998 999999999999999999987 778999999988765 1
Q ss_pred chhHHHHHHHhHhcCCHHHHHHHhhcccccCCC--ChhHHHHHHHhcCCCc------------hhhHHHhhhccceeEec
Q 041067 366 LASIFEVLKISYDSLDDKEKNIFLDVACFFQGE--DVDPVMKFFNASGFYP------------EIGMSVLVDKSLIAIDS 431 (770)
Q Consensus 366 ~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~g~~~------------~~~~~~L~~~sLi~~~~ 431 (770)
.+.|..++++|||.||++.|.||+|||.||+|+ +++.++..|+|+||+. ..++.+|++++|+....
T Consensus 394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 567899999999999988999999999999996 4577999999999763 34599999999999864
Q ss_pred C----CeEEecHHHHHHHHHHHhhhccCCCCccccCchh-hhhHhhhcccCceeEEEEEecCCcceeeecCcccccCCCC
Q 041067 432 Y----NKITMHDLLQELGKEIVRQESINPENRSRLWHHE-DICEVLMYNTGTKKIEGICLDMSKVKEIHLNPSTFTKMPK 506 (770)
Q Consensus 432 ~----~~~~mHdl~~~~~~~i~~~e~~~~~~~~~l~~~~-d~~~~l~~~~~~~~i~~i~l~~~~~~~~~~~~~~~~~l~~ 506 (770)
. ..+.|||++|+||.+++.+....... ...... ...+ ..+......++++++.......+... .+.++
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias~~~~~~e~--~iv~~~~~~~~-~~~~~~~~~~rr~s~~~~~~~~~~~~----~~~~~ 546 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIASDFGKQEEN--QIVSDGVGLSE-IPQVKSWNSVRRMSLMNNKIEHIAGS----SENPK 546 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhccccccccc--eEEECCcCccc-cccccchhheeEEEEeccchhhccCC----CCCCc
Confidence 2 67999999999999999944311111 000000 0000 01111123445554444333222211 12335
Q ss_pred CceEEEecCC--CCCCccCCccCCCCCCCCceeEEEEcCC-CCCCCCCCCC-cccccccccCCCCccccccccccCcCCc
Q 041067 507 LRFLKFYSSS--FNGENKCKISYLQDPGFGEVKYLHWYGY-PLKSLPSNLS-AEKLMLLEVPDSDIEQLWDCVKHYRKLN 582 (770)
Q Consensus 507 Lr~L~l~~~~--l~~~~p~~l~~l~~~~l~~Lr~L~l~~~-~l~~lp~~~~-~~~L~~L~l~~~~i~~l~~~~~~l~~L~ 582 (770)
|++|-+.+|. +....+..+..+ +.||+|++++| .+..||+.+. +-+|++|+++++.+..+|.++.+++.|.
T Consensus 547 L~tLll~~n~~~l~~is~~ff~~m-----~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 547 LRTLLLQRNSDWLLEISGEFFRSL-----PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred cceEEEeecchhhhhcCHHHHhhC-----cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhh
Confidence 7777777664 221111112333 47777777754 4567777665 6777777777777777777777777777
Q ss_pred EEccCcCcCccccCCCCCCCCCccceeEEeccCC
Q 041067 583 QIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGS 616 (770)
Q Consensus 583 ~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~ 616 (770)
+|++..+..+ ..+|. ....|.+|++|.+...
T Consensus 622 ~Lnl~~~~~l-~~~~~--i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 622 YLNLEVTGRL-ESIPG--ILLELQSLRVLRLPRS 652 (889)
T ss_pred eecccccccc-ccccc--hhhhcccccEEEeecc
Confidence 7777776554 33322 2333667777766543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=6.7e-38 Score=329.35 Aligned_cols=244 Identities=31% Similarity=0.510 Sum_probs=198.9
Q ss_pred chHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHH--HhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHh
Q 041067 167 VESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDK--ISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLL 244 (770)
Q Consensus 167 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 244 (770)
||.++++|.+.|...+++.++|+|+||||+||||||++++++ ++.+|+.++|+... . .. ....+.+.++..+.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~-~---~~-~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLS-K---NP-SLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEE-S----S-CCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccc-c---cc-cccccccccccccc
Confidence 789999999999876688999999999999999999999988 88999999999832 2 22 44777888888876
Q ss_pred cCCC-------CcchHHHHHHHHCCCcEEEEEeCCCChHhHHHHHhcccCCCCCceEEEEcCchhhhhhcCc-ceEEEeC
Q 041067 245 KHKN-------VMPFIDLIFRRLSRMKVLIVFDDVTCLSQLQSLIGSLYWLTPVSRIIITTRNKQVLRNWGV-RKIYEMK 316 (770)
Q Consensus 245 ~~~~-------~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~~-~~~~~l~ 316 (770)
.... ..+....+.+.|+++++||||||||+...|+.+...++.+..||+||||||+..++..++. ...++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6521 1167788999999999999999999999999998888777889999999999999877654 6899999
Q ss_pred ccChHHHHHHHH---------------------HhccCCCchhHHHHhhHhcCC-CHHHHHHHHHHHHhcc------chh
Q 041067 317 ALEYHHAIELFI---------------------MKYAQGVPLALKVLGCFLYER-EKEVWESAIDKLQRIL------LAS 368 (770)
Q Consensus 317 ~L~~~ea~~Lf~---------------------~~~~~glPLal~~~g~~L~~~-~~~~w~~~l~~l~~~~------~~~ 368 (770)
+|+.+||++||. +++|+|+|||++++|++|+.+ +..+|+.+++++.... ...
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999998 899999999999999999654 6789999998877654 467
Q ss_pred HHHHHHHhHhcCCHHHHHHHhhcccccCCCC--hhHHHHHHHhcCCCch
Q 041067 369 IFEVLKISYDSLDDKEKNIFLDVACFFQGED--VDPVMKFFNASGFYPE 415 (770)
Q Consensus 369 i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~~~~~~g~~~~ 415 (770)
+..++..||+.||++.|.||++||+||.++. .+.++++|.++|++..
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 9999999999999999999999999999955 6889999999998764
No 4
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=3e-33 Score=257.17 Aligned_cols=132 Identities=29% Similarity=0.437 Sum_probs=118.4
Q ss_pred Eechhhhhhh------hhhhhcCCCCCCCcchHHHHHHHHhccceeEeecCCccCchhhHHHHHHHHHhhccCCcEEEeE
Q 041067 5 WNFQLKVYKV------AELIKRRGVHGGDEISKSLVNVIEASAISVIVFSEGYASSRSCLDELVKILECKKEYAQIVIPF 78 (770)
Q Consensus 5 ~~~~~~~~~~------~~~~d~~~~~~g~~~~~~l~~ai~~s~~~ivv~s~~y~~s~~cl~El~~i~~~~~~~~~~v~pv 78 (770)
.+|+.+||+. .||+|++++++|+.|.++|.+||++|+++||||||+||+|+|||+||++|++|+ .+|+||
T Consensus 40 ~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I~e~~----~~ViPI 115 (187)
T PLN03194 40 RTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMESK----KRVIPI 115 (187)
T ss_pred ccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHHHHHcC----CEEEEE
Confidence 4788888876 499999999999999999999999999999999999999999999999999975 379999
Q ss_pred EEEecCCccccc-cCcHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccccccccc-cchhhHHHHhHhhhhhccccc
Q 041067 79 FYRVDPSDVRNQ-TGSFGDSFSKLEERLKENTEKLRSWRKALKEAASLSGFLSLN-IRHESEFINEVGNDILKRLDE 153 (770)
Q Consensus 79 f~~v~p~~vr~~-~~~~~~~f~~~~~~~~~~~~~v~~w~~al~~~a~~~g~~~~~-~~~e~~~i~~i~~~i~~~~~~ 153 (770)
||+|||+|||+| .|. ...+++++||+||++||+++||+... .++|+++|++|++.|.+++-.
T Consensus 116 FY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i~~iv~~v~k~l~~ 179 (187)
T PLN03194 116 FCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVTMASDAVIKNLIE 179 (187)
T ss_pred EecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999997 443 23578999999999999999997643 688999999999999888753
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=7.1e-24 Score=260.12 Aligned_cols=275 Identities=20% Similarity=0.259 Sum_probs=172.0
Q ss_pred eEEEEEecCCcceeeecCcccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCCccccc
Q 041067 480 KIEGICLDMSKVKEIHLNPSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLSAEKLM 559 (770)
Q Consensus 480 ~i~~i~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~~~~L~ 559 (770)
.+..+.+..... ....+..|..+++|+.|++++|.+.+.+|..+.. .+.+||+|++++|.+....+...+.+|+
T Consensus 70 ~v~~L~L~~~~i--~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~----~l~~L~~L~Ls~n~l~~~~p~~~l~~L~ 143 (968)
T PLN00113 70 RVVSIDLSGKNI--SGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFT----TSSSLRYLNLSNNNFTGSIPRGSIPNLE 143 (968)
T ss_pred cEEEEEecCCCc--cccCChHHhCCCCCCEEECCCCccCCcCChHHhc----cCCCCCEEECcCCccccccCccccCCCC
Confidence 455554443322 2233667888999999999999988877765541 2257888888887765432233456777
Q ss_pred ccccCCCCcc-ccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEec
Q 041067 560 LLEVPDSDIE-QLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLS 638 (770)
Q Consensus 560 ~L~l~~~~i~-~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~ 638 (770)
+|++++|.+. .+|..+..+++|++|++++|... ..+|. .+.++++|++|+|++|.....+|..++++++|++|+++
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV-GKIPN--SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred EEECcCCcccccCChHHhcCCCCCEEECccCccc-ccCCh--hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 7777777775 55666777777777777776533 34443 45666777777777776666666666667777777777
Q ss_pred CCCCCCccCCccc--cCccEEeccCcCcc-ccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCccc
Q 041067 639 GCSKLKRLPEISS--GNISWLFLRETAIE-ELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRL 715 (770)
Q Consensus 639 ~~~~l~~lp~~~~--~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~l 715 (770)
+|.....+|..+. ++|++|++++|.+. .+|.+++.+++|++|++++|...+.+|..+.++++|++|++++|...+.+
T Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 300 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC
Confidence 6665555665444 56666666666655 55666666666666666666655556666666666666666666555555
Q ss_pred CcccCCCCCCcEEEccCCCCc-ccchhhhCCCCCcEEecccCccCCcCC
Q 041067 716 PECLAQFSSPIILNLAKTNIE-RIPKSISQLLMLRYLLLSYSESLQSSP 763 (770)
Q Consensus 716 p~~l~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~l~~c~~L~~lP 763 (770)
|..+.++++|+.|++++|.+. .+|..+..+++|+.|++++|.....+|
T Consensus 301 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC
Confidence 555555566666666555554 445555555555555555554333333
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=6.4e-22 Score=242.90 Aligned_cols=251 Identities=21% Similarity=0.275 Sum_probs=119.8
Q ss_pred ccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCC-CCCCCCC-cccccccccCCCCcc-cccccc
Q 041067 499 STFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLK-SLPSNLS-AEKLMLLEVPDSDIE-QLWDCV 575 (770)
Q Consensus 499 ~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~-~lp~~~~-~~~L~~L~l~~~~i~-~l~~~~ 575 (770)
..++++++|+.|++++|.+.+.+|..+..++ +|++|++.+|.+. .+|..+. +.+|++|++++|.+. .+|..+
T Consensus 158 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-----~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 232 (968)
T PLN00113 158 NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT-----SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI 232 (968)
T ss_pred hHHhcCCCCCEEECccCcccccCChhhhhCc-----CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH
Confidence 3445555555555555555544444444433 4555555554443 2333332 345555555555443 344444
Q ss_pred ccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc--cC
Q 041067 576 KHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS--GN 653 (770)
Q Consensus 576 ~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~--~~ 653 (770)
..+++|++|++++|... ..+|. .+.++++|++|++++|.....+|..++++++|++|++++|.....+|.... ++
T Consensus 233 ~~l~~L~~L~L~~n~l~-~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 309 (968)
T PLN00113 233 GGLTSLNHLDLVYNNLT-GPIPS--SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN 309 (968)
T ss_pred hcCCCCCEEECcCceec-cccCh--hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCC
Confidence 45555555555544322 22222 334444444444444444344444444444444444444443333443322 34
Q ss_pred ccEEeccCc------------------------Ccc-ccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeec
Q 041067 654 ISWLFLRET------------------------AIE-ELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSG 708 (770)
Q Consensus 654 L~~L~l~~~------------------------~i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~ 708 (770)
|+.|++++| .+. .+|..++.+++|+.|++++|...+.+|..+..+++|+.|++++
T Consensus 310 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 389 (968)
T PLN00113 310 LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS 389 (968)
T ss_pred CcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcC
Confidence 444444444 443 3444444444444444444444444444444444444444444
Q ss_pred CCCCcccCcccCCCCCCcEEEccCCCCc-ccchhhhCCCCCcEEecccCc
Q 041067 709 CSNLQRLPECLAQFSSPIILNLAKTNIE-RIPKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 709 ~~~~~~lp~~l~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~l~~c~ 757 (770)
|...+.+|..++.+++|+.|++++|+++ .+|..+.++++|+.|++++|.
T Consensus 390 n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred CEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 4444455555555566666666666555 455556666666666666665
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=1.1e-23 Score=221.47 Aligned_cols=258 Identities=21% Similarity=0.320 Sum_probs=214.1
Q ss_pred cccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCC--CcccccccccCCCCcccccccc
Q 041067 498 PSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNL--SAEKLMLLEVPDSDIEQLWDCV 575 (770)
Q Consensus 498 ~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~l~~~~i~~l~~~~ 575 (770)
|..+-+|..|..|+++.|++.. .|.++.+.. ++-.|+++.|.+.++|... ++..|-+|+|++|.++.||..+
T Consensus 96 P~diF~l~dLt~lDLShNqL~E-vP~~LE~AK-----n~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~ 169 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHNQLRE-VPTNLEYAK-----NSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQI 169 (1255)
T ss_pred Cchhcccccceeeecchhhhhh-cchhhhhhc-----CcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHH
Confidence 4456688999999999999876 777777764 8889999999999999754 5788999999999999999999
Q ss_pred ccCcCCcEEccCcCcCcc---ccCCCC-------------------CCCCCccceeEEeccCCCCCcccCccCCCCCCCc
Q 041067 576 KHYRKLNQIIPAACNKLI---AKTPNP-------------------MLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLT 633 (770)
Q Consensus 576 ~~l~~L~~L~L~~~~~l~---~~~p~~-------------------~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~ 633 (770)
..+.+|++|+|+++.-.. .++|.. .++..|.+|..+||+.|+ +..+|..+.++++|+
T Consensus 170 RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~Lr 248 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLR 248 (1255)
T ss_pred HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhh
Confidence 999999999998865221 233331 123344677777777554 777888888888899
Q ss_pred EEEecCCCCCCccCCccc--cCccEEeccCcCccccCcccccCCCCCEEeccCCCC-CCCCCcccCCCCCCcEEEeecCC
Q 041067 634 KLNLSGCSKLKRLPEISS--GNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKR-LKSLPRSLWMLKSLGVLNLSGCS 710 (770)
Q Consensus 634 ~L~L~~~~~l~~lp~~~~--~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~-~~~lp~~l~~l~~L~~L~l~~~~ 710 (770)
.|+||+|. ++++....+ .+|++|+++.|.++.+|..+.+|++|+.|.+.+|+. ..-+|++++.|.+|+.+...+ +
T Consensus 249 rLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N 326 (1255)
T KOG0444|consen 249 RLNLSGNK-ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-N 326 (1255)
T ss_pred eeccCcCc-eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-c
Confidence 99998876 566655544 789999999999999999999999999999988875 356999999999999999987 5
Q ss_pred CCcccCcccCCCCCCcEEEccCCCCcccchhhhCCCCCcEEecccCccCCcCCC
Q 041067 711 NLQRLPECLAQFSSPIILNLAKTNIERIPKSISQLLMLRYLLLSYSESLQSSPK 764 (770)
Q Consensus 711 ~~~~lp~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~L~~lP~ 764 (770)
.++-+|+.++.+..|+.|.|+.|.+..+|..|.-|+.|+.|++..|++|---|+
T Consensus 327 ~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 327 KLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred ccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 688999999999999999999999999999999999999999999999985554
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=5.8e-21 Score=201.26 Aligned_cols=244 Identities=24% Similarity=0.336 Sum_probs=167.2
Q ss_pred CCCceEEEecCCCCC-CccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCC-cccccccccCCCCccccccccccCcCCc
Q 041067 505 PKLRFLKFYSSSFNG-ENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLS-AEKLMLLEVPDSDIEQLWDCVKHYRKLN 582 (770)
Q Consensus 505 ~~Lr~L~l~~~~l~~-~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~-~~~L~~L~l~~~~i~~l~~~~~~l~~L~ 582 (770)
+-.|-.++++|.++| ..|.....+ ..++||.+....+..+|.... +.+|.+|.+.+|++.++...+..++.||
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qM-----t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQM-----TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLR 81 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHh-----hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhH
Confidence 344556777777774 445455444 488888888888888887665 6888888999998888888888888888
Q ss_pred EEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc---cCccEEec
Q 041067 583 QIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS---GNISWLFL 659 (770)
Q Consensus 583 ~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~---~~L~~L~l 659 (770)
.+.+..++--...+| ..+-.|..|.+|||+.|. +...|..+-+-+++-.|+||+|+ ++.+|.... ..|-.|+|
T Consensus 82 sv~~R~N~LKnsGiP--~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIP--TDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred HHhhhccccccCCCC--chhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcc
Confidence 888877542112233 356677888888998887 78888888888888888888876 788887665 56678888
Q ss_pred cCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCC-CcccCcccCCCCCCcEEEccCCCCccc
Q 041067 660 RETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSN-LQRLPECLAQFSSPIILNLAKTNIERI 738 (770)
Q Consensus 660 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~-~~~lp~~l~~l~~L~~L~L~~~~l~~l 738 (770)
++|.+..+|+.+..|.+|++|.|++|+....--..+..|++|++|++++.+. +..+|.++..+.+|..+++|.|++..+
T Consensus 158 S~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v 237 (1255)
T KOG0444|consen 158 SNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV 237 (1255)
T ss_pred ccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc
Confidence 8888888888888888888888888764211111222345555555554332 234555555555555555555555555
Q ss_pred chhhhCCCCCcEEecccCc
Q 041067 739 PKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 739 p~~l~~l~~L~~L~l~~c~ 757 (770)
|..+.++++|+.|++++|+
T Consensus 238 Pecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred hHHHhhhhhhheeccCcCc
Confidence 5555555555555555554
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=5.5e-18 Score=208.55 Aligned_cols=220 Identities=30% Similarity=0.483 Sum_probs=141.7
Q ss_pred ceeEEEEcCC-CCCCCCCCCCcccccccccCCC-CccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEe
Q 041067 535 EVKYLHWYGY-PLKSLPSNLSAEKLMLLEVPDS-DIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLN 612 (770)
Q Consensus 535 ~Lr~L~l~~~-~l~~lp~~~~~~~L~~L~l~~~-~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~ 612 (770)
+|++|++.++ .++.+|....+.+|+.|++.+| .+..+|..+..+++|+.|++++|..+ ..+|.. .++++|++|+
T Consensus 635 ~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L-~~Lp~~---i~l~sL~~L~ 710 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL-EILPTG---INLKSLYRLN 710 (1153)
T ss_pred CCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc-CccCCc---CCCCCCCEEe
Confidence 5555555543 2444444333455555555543 34445555555555555555555554 444431 1445555555
Q ss_pred ccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc--------------------------------cCccEEecc
Q 041067 613 LRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS--------------------------------GNISWLFLR 660 (770)
Q Consensus 613 L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~--------------------------------~~L~~L~l~ 660 (770)
+++|..+..+|.. ..+|++|++++|. ++.+|.... ++|+.|+++
T Consensus 711 Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls 786 (1153)
T PLN03210 711 LSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS 786 (1153)
T ss_pred CCCCCCccccccc---cCCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCC
Confidence 5555544444431 2334444444433 333443211 356777777
Q ss_pred Cc-CccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCc--------------------ccCccc
Q 041067 661 ET-AIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQ--------------------RLPECL 719 (770)
Q Consensus 661 ~~-~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~--------------------~lp~~l 719 (770)
+| .+.++|.+++++++|+.|++++|..++.+|..+ ++++|+.|++++|..+. .+|.++
T Consensus 787 ~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si 865 (1153)
T PLN03210 787 DIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWI 865 (1153)
T ss_pred CCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHH
Confidence 66 455789999999999999999998888888765 67888888888875543 456677
Q ss_pred CCCCCCcEEEccCCC-CcccchhhhCCCCCcEEecccCccCCcCC
Q 041067 720 AQFSSPIILNLAKTN-IERIPKSISQLLMLRYLLLSYSESLQSSP 763 (770)
Q Consensus 720 ~~l~~L~~L~L~~~~-l~~lp~~l~~l~~L~~L~l~~c~~L~~lP 763 (770)
+.+++|+.|++++|+ ++.+|..+..+++|+.|++++|.+|+.++
T Consensus 866 ~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 866 EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 889999999999854 77999989999999999999999998654
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=1.9e-19 Score=189.02 Aligned_cols=267 Identities=20% Similarity=0.175 Sum_probs=197.0
Q ss_pred ecCCcceeeecCcccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCC-CCC-ccccccccc
Q 041067 486 LDMSKVKEIHLNPSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPS-NLS-AEKLMLLEV 563 (770)
Q Consensus 486 l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~-~~~-~~~L~~L~l 563 (770)
+|++......+....|..-.++..|++.+|.++.. +..++ .++.+|-.|.++.|.++.+|. .|. +.+|+.|+|
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l---~~~~F--~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTL---ETGHF--DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDL 228 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeecccccccc---ccccc--cccchheeeecccCcccccCHHHhhhcchhhhhhc
Confidence 33443333344456677777888888888877652 22222 244578888888888888884 565 788888888
Q ss_pred CCCCcccc-ccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCC
Q 041067 564 PDSDIEQL-WDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSK 642 (770)
Q Consensus 564 ~~~~i~~l-~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~ 642 (770)
..|.|+.. |-.++.+++|+.|.|..+.. .++-+ ..+-.|.++++|+|+.|+...--..++.+|++|+.|++|+|..
T Consensus 229 nrN~irive~ltFqgL~Sl~nlklqrN~I--~kL~D-G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI 305 (873)
T KOG4194|consen 229 NRNRIRIVEGLTFQGLPSLQNLKLQRNDI--SKLDD-GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI 305 (873)
T ss_pred cccceeeehhhhhcCchhhhhhhhhhcCc--ccccC-cceeeecccceeecccchhhhhhcccccccchhhhhccchhhh
Confidence 88888877 66788888888888877543 33333 3455678889999998884443445677899999999999873
Q ss_pred CCccCCccc--cCccEEeccCcCccccCc-ccccCCCCCEEeccCCCCCCCCC-cccCCCCCCcEEEeecCCCCcccC--
Q 041067 643 LKRLPEISS--GNISWLFLRETAIEELPS-SIERLHRLGYLDLLDCKRLKSLP-RSLWMLKSLGVLNLSGCSNLQRLP-- 716 (770)
Q Consensus 643 l~~lp~~~~--~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~lp-- 716 (770)
-.--++... ++|++|+|+.|.+.++|+ ++..|..|+.|+|+.|.. ..+. ..+..+++|++|+|++|.....+-
T Consensus 306 ~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi-~~l~e~af~~lssL~~LdLr~N~ls~~IEDa 384 (873)
T KOG4194|consen 306 QRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI-DHLAEGAFVGLSSLHKLDLRSNELSWCIEDA 384 (873)
T ss_pred heeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccch-HHHHhhHHHHhhhhhhhcCcCCeEEEEEecc
Confidence 333344433 899999999999999876 477889999999999874 3333 347788999999999887654443
Q ss_pred -cccCCCCCCcEEEccCCCCcccch-hhhCCCCCcEEecccCccCCcC
Q 041067 717 -ECLAQFSSPIILNLAKTNIERIPK-SISQLLMLRYLLLSYSESLQSS 762 (770)
Q Consensus 717 -~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~c~~L~~l 762 (770)
..+..|++|+.|.+.||+++.+|. ++..+++|+.|+|.+|. +.++
T Consensus 385 a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na-iaSI 431 (873)
T KOG4194|consen 385 AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA-IASI 431 (873)
T ss_pred hhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc-ceee
Confidence 346779999999999999998885 67889999999999998 5444
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=1.3e-19 Score=182.47 Aligned_cols=243 Identities=24% Similarity=0.280 Sum_probs=189.6
Q ss_pred cCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccccccc-cCcC
Q 041067 502 TKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDCVK-HYRK 580 (770)
Q Consensus 502 ~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~-~l~~ 580 (770)
-+|+.|+.|+...|.+.. +|+.++.+. +|..|++..|.+..+|+.-+...|.+|++..|+++.+|.... .+++
T Consensus 180 i~m~~L~~ld~~~N~L~t-lP~~lg~l~-----~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~ 253 (565)
T KOG0472|consen 180 IAMKRLKHLDCNSNLLET-LPPELGGLE-----SLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNS 253 (565)
T ss_pred HHHHHHHhcccchhhhhc-CChhhcchh-----hhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhccccc
Confidence 348899999988876654 777777665 888888999999999966678899999999999999988754 8899
Q ss_pred CcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCC-----------------
Q 041067 581 LNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKL----------------- 643 (770)
Q Consensus 581 L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l----------------- 643 (770)
|.+|||..+ ++ +.+|+ .+..+++|++||+++|. +..+|.++|+| +|++|-+.||+.-
T Consensus 254 l~vLDLRdN-kl-ke~Pd--e~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKy 327 (565)
T KOG0472|consen 254 LLVLDLRDN-KL-KEVPD--EICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKY 327 (565)
T ss_pred ceeeecccc-cc-ccCch--HHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHH
Confidence 999999884 45 77787 77888899999999776 88899999999 8999988877410
Q ss_pred -----------------------------------------------CccCCccc-----cCccEEeccCcCccccC---
Q 041067 644 -----------------------------------------------KRLPEISS-----GNISWLFLRETAIEELP--- 668 (770)
Q Consensus 644 -----------------------------------------------~~lp~~~~-----~~L~~L~l~~~~i~~lp--- 668 (770)
+.+|+..+ .-....+++.|++.++|
T Consensus 328 Lrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L 407 (565)
T KOG0472|consen 328 LRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRL 407 (565)
T ss_pred HHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhh
Confidence 11111111 01333455556555555
Q ss_pred ---------------------cccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCC----------------
Q 041067 669 ---------------------SSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSN---------------- 711 (770)
Q Consensus 669 ---------------------~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~---------------- 711 (770)
..+..+++|..|++++|. +..+|..++.+..|+.|+++.|..
T Consensus 408 ~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtl 486 (565)
T KOG0472|consen 408 VELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETL 486 (565)
T ss_pred HHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHH
Confidence 335567899999999865 788999999999999999997632
Q ss_pred ------CcccCcc-cCCCCCCcEEEccCCCCcccchhhhCCCCCcEEecccCc
Q 041067 712 ------LQRLPEC-LAQFSSPIILNLAKTNIERIPKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 712 ------~~~lp~~-l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~ 757 (770)
++.++.. +.+|.+|..|++.+|.+..+|..+++|.+|+.|.++||+
T Consensus 487 las~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 487 LASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred HhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCc
Confidence 2334433 788999999999999999999999999999999999998
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.69 E-value=5.2e-20 Score=185.37 Aligned_cols=241 Identities=25% Similarity=0.365 Sum_probs=119.5
Q ss_pred ccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCC-CcccccccccCCCCccccccccccCc
Q 041067 501 FTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNL-SAEKLMLLEVPDSDIEQLWDCVKHYR 579 (770)
Q Consensus 501 ~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~ 579 (770)
+.++..|.+|.+.+|.+.. +|+++..+. .+..|..+.+.+..+|..+ +...|+.|+.++|.+..++..+..+-
T Consensus 64 l~nL~~l~vl~~~~n~l~~-lp~aig~l~-----~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~ 137 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQ-LPAAIGELE-----ALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLL 137 (565)
T ss_pred hhcccceeEEEeccchhhh-CCHHHHHHH-----HHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHh
Confidence 3445555555555555443 333443332 4444444445555554433 23455555555555555555555555
Q ss_pred CCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc--cCccEE
Q 041067 580 KLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS--GNISWL 657 (770)
Q Consensus 580 ~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L 657 (770)
.|..++..+++. ..+|. .+.++.+|..|++.+|. +..+|+..-+|+.|++|+...|- ++.+|+..+ .+|..|
T Consensus 138 ~l~dl~~~~N~i--~slp~--~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~L 211 (565)
T KOG0472|consen 138 DLEDLDATNNQI--SSLPE--DMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNL-LETLPPELGGLESLELL 211 (565)
T ss_pred hhhhhhcccccc--ccCch--HHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhh-hhcCChhhcchhhhHHH
Confidence 555444444332 22222 34444555555555554 33333333345555555554432 445554444 455555
Q ss_pred eccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccC-CCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCc
Q 041067 658 FLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLW-MLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIE 736 (770)
Q Consensus 658 ~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~-~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~ 736 (770)
++..|.+..+| +|..+..|..|+++.|. ...+|...+ ++++|.+|++..| .++++|..+.-+.+|+.|++++|.++
T Consensus 212 yL~~Nki~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 212 YLRRNKIRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred HhhhcccccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCccc
Confidence 55555555555 45555555555555543 344444433 5555555555553 34555555555555555555555555
Q ss_pred ccchhhhCCCCCcEEecccCc
Q 041067 737 RIPKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 737 ~lp~~l~~l~~L~~L~l~~c~ 757 (770)
.+|.+++++ +|+.|-+.|||
T Consensus 289 ~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 289 SLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cCCcccccc-eeeehhhcCCc
Confidence 555555555 55555555555
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=1.2e-16 Score=184.15 Aligned_cols=224 Identities=24% Similarity=0.354 Sum_probs=145.9
Q ss_pred CCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccccccccCcCCcEE
Q 041067 505 PKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDCVKHYRKLNQI 584 (770)
Q Consensus 505 ~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L 584 (770)
++|+.|++++|.+.. +|..+ . .+|+.|++.+|.++.+|..+ +.+|+.|++++|++..+|..+. .+|+.|
T Consensus 199 ~~L~~L~Ls~N~Lts-LP~~l---~----~nL~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L 267 (754)
T PRK15370 199 EQITTLILDNNELKS-LPENL---Q----GNIKTLYANSNQLTSIPATL-PDTIQEMELSINRITELPERLP--SALQSL 267 (754)
T ss_pred cCCcEEEecCCCCCc-CChhh---c----cCCCEEECCCCccccCChhh-hccccEEECcCCccCcCChhHh--CCCCEE
Confidence 457777777776664 34322 1 46777777777777777644 3467777777777777776543 467777
Q ss_pred ccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccccCccEEeccCcCc
Q 041067 585 IPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISSGNISWLFLRETAI 664 (770)
Q Consensus 585 ~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~l~~~~i 664 (770)
+++++ .+ ..+|. .++ .+|++|++++|. +..+|..+. ++|+.|++++|. +..+|.....+|+.|++++|.+
T Consensus 268 ~Ls~N-~L-~~LP~--~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N~L 337 (754)
T PRK15370 268 DLFHN-KI-SCLPE--NLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNS-LTALPETLPPGLKTLEAGENAL 337 (754)
T ss_pred ECcCC-cc-Ccccc--ccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCc-cccCCccccccceeccccCCcc
Confidence 77754 44 44554 222 367777777775 556665442 467777777765 4556655456777777777777
Q ss_pred cccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCcccchhhh-
Q 041067 665 EELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIERIPKSIS- 743 (770)
Q Consensus 665 ~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp~~l~- 743 (770)
..+|.++. ++|+.|++++|.. ..+|..+. ++|+.|++++|. +..+|..+. .+|+.|++++|+++.+|..+.
T Consensus 338 t~LP~~l~--~sL~~L~Ls~N~L-~~LP~~lp--~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~ 409 (754)
T PRK15370 338 TSLPASLP--PELQVLDVSKNQI-TVLPETLP--PTITTLDVSRNA-LTNLPENLP--AALQIMQASRNNLVRLPESLPH 409 (754)
T ss_pred ccCChhhc--CcccEEECCCCCC-CcCChhhc--CCcCEEECCCCc-CCCCCHhHH--HHHHHHhhccCCcccCchhHHH
Confidence 77776553 5777788877763 45665543 577778887765 345666543 357777777777776665543
Q ss_pred ---CCCCCcEEecccCc
Q 041067 744 ---QLLMLRYLLLSYSE 757 (770)
Q Consensus 744 ---~l~~L~~L~l~~c~ 757 (770)
.++++..|++.+|+
T Consensus 410 ~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 410 FRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HhhcCCCccEEEeeCCC
Confidence 34677777887777
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.66 E-value=1.1e-16 Score=168.59 Aligned_cols=266 Identities=20% Similarity=0.187 Sum_probs=194.5
Q ss_pred EecCCcceeeecCcccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCC--Ccccccccc
Q 041067 485 CLDMSKVKEIHLNPSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNL--SAEKLMLLE 562 (770)
Q Consensus 485 ~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~ 562 (770)
.+|++..+.-++....|.++++|+.+.+.+|.+.. +|.. .... .+|..|.+.+|.+.++.+.- ....|+.|+
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~-IP~f-~~~s----ghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR-IPRF-GHES----GHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhhh-cccc-cccc----cceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 35555555556666778888888888888887765 4433 2233 47888888888777765422 246788888
Q ss_pred cCCCCcccccccc-ccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCcc-CCCCCCCcEEEecCC
Q 041067 563 VPDSDIEQLWDCV-KHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSR-IFNLEFLTKLNLSGC 640 (770)
Q Consensus 563 l~~~~i~~l~~~~-~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~~ 640 (770)
|+.|.|..++... ..-.++++|+|+++.. ..-....+.+|.+|..|.|+.|. +..+|.. +.+|++|+.|+|..|
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~I---t~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRI---TTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccc---cccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhcccc
Confidence 8888888877653 4447888888887653 22233456777788888888887 6666654 445888888888887
Q ss_pred CCCCcc--CCccc-cCccEEeccCcCccccCcc-cccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccC
Q 041067 641 SKLKRL--PEISS-GNISWLFLRETAIEELPSS-IERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLP 716 (770)
Q Consensus 641 ~~l~~l--p~~~~-~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp 716 (770)
. ++.. -.+.+ .+|+.|.+..|.+..+.+. +..+.++++|+|..|.....--.++.+|++|+.|++|.|.+...-+
T Consensus 232 ~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 232 R-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred c-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence 5 3322 22222 6788888888888888765 5678899999999887654444578899999999999988877778
Q ss_pred cccCCCCCCcEEEccCCCCcccch-hhhCCCCCcEEecccCccCCcC
Q 041067 717 ECLAQFSSPIILNLAKTNIERIPK-SISQLLMLRYLLLSYSESLQSS 762 (770)
Q Consensus 717 ~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~c~~L~~l 762 (770)
+..+..++|+.|+|++|.++.+++ ++..|+.|+.|+|++|. +..+
T Consensus 311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l 356 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHL 356 (873)
T ss_pred chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHH
Confidence 888889999999999999998875 57778899999999986 5444
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=3.8e-16 Score=180.00 Aligned_cols=227 Identities=22% Similarity=0.289 Sum_probs=168.2
Q ss_pred CCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccccccccCcCCcEEc
Q 041067 506 KLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDCVKHYRKLNQII 585 (770)
Q Consensus 506 ~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~ 585 (770)
+...|+++++.++. +|.. ++ .+|+.|++.+|.++.+|..+. .+|+.|++++|++..+|..+. ++|+.|+
T Consensus 179 ~~~~L~L~~~~Lts-LP~~---Ip----~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLTT-IPAC---IP----EQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEME 247 (754)
T ss_pred CceEEEeCCCCcCc-CCcc---cc----cCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEEE
Confidence 45677777776664 3432 34 578888999998888887654 588999999998888887553 4788899
Q ss_pred cCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccccCccEEeccCcCcc
Q 041067 586 PAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISSGNISWLFLRETAIE 665 (770)
Q Consensus 586 L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~l~~~~i~ 665 (770)
|++|.. ..+|. .++ .+|+.|++++|. +..+|..+. ++|++|++++|. ++.+|.....+|+.|++++|.+.
T Consensus 248 Ls~N~L--~~LP~--~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 248 LSINRI--TELPE--RLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHLPSGITHLNVQSNSLT 317 (754)
T ss_pred CcCCcc--CcCCh--hHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCcccchhhHHHHHhcCCccc
Confidence 888753 45554 222 478888998776 667887663 578999998875 66777655567888889988888
Q ss_pred ccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCcccchhhhCC
Q 041067 666 ELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIERIPKSISQL 745 (770)
Q Consensus 666 ~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp~~l~~l 745 (770)
.+|..+. ++|+.|++++|.. ..+|..+. ++|+.|++++|.. ..+|..+ .++|+.|+|++|+++.+|..+.
T Consensus 318 ~LP~~l~--~sL~~L~Ls~N~L-t~LP~~l~--~sL~~L~Ls~N~L-~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~-- 387 (754)
T PRK15370 318 ALPETLP--PGLKTLEAGENAL-TSLPASLP--PELQVLDVSKNQI-TVLPETL--PPTITTLDVSRNALTNLPENLP-- 387 (754)
T ss_pred cCCcccc--ccceeccccCCcc-ccCChhhc--CcccEEECCCCCC-CcCChhh--cCCcCEEECCCCcCCCCCHhHH--
Confidence 8886553 6888888888874 45776653 6889999988754 4677655 3688899999998888887765
Q ss_pred CCCcEEecccCccCCcCCC
Q 041067 746 LMLRYLLLSYSESLQSSPK 764 (770)
Q Consensus 746 ~~L~~L~l~~c~~L~~lP~ 764 (770)
..|+.|++++|+ +..+|+
T Consensus 388 ~sL~~LdLs~N~-L~~LP~ 405 (754)
T PRK15370 388 AALQIMQASRNN-LVRLPE 405 (754)
T ss_pred HHHHHHhhccCC-cccCch
Confidence 368888888886 777775
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.64 E-value=2.2e-15 Score=172.59 Aligned_cols=215 Identities=23% Similarity=0.254 Sum_probs=143.0
Q ss_pred CCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccccccccCcCCcEE
Q 041067 505 PKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDCVKHYRKLNQI 584 (770)
Q Consensus 505 ~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L 584 (770)
++|+.|++++|.++. +|. ++ .+|+.|++.+|.+..+|.. +.+|..|++.+|++..+|.. +++|+.|
T Consensus 242 ~~Lk~LdLs~N~Lts-LP~----lp----~sL~~L~Ls~N~L~~Lp~l--p~~L~~L~Ls~N~Lt~LP~~---p~~L~~L 307 (788)
T PRK15387 242 PELRTLEVSGNQLTS-LPV----LP----PGLLELSIFSNPLTHLPAL--PSGLCKLWIFGNQLTSLPVL---PPGLQEL 307 (788)
T ss_pred CCCcEEEecCCccCc-ccC----cc----cccceeeccCCchhhhhhc--hhhcCEEECcCCcccccccc---cccccee
Confidence 455555555555543 221 12 3555555555555555542 24566666666666666542 3567777
Q ss_pred ccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccccCccEEeccCcCc
Q 041067 585 IPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISSGNISWLFLRETAI 664 (770)
Q Consensus 585 ~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~l~~~~i 664 (770)
++++|. + ..+|.. ..+|+.|++++|. +..+|.. ..+|++|++++|. ++.+|... .+|+.|++++|.+
T Consensus 308 dLS~N~-L-~~Lp~l-----p~~L~~L~Ls~N~-L~~LP~l---p~~Lq~LdLS~N~-Ls~LP~lp-~~L~~L~Ls~N~L 374 (788)
T PRK15387 308 SVSDNQ-L-ASLPAL-----PSELCKLWAYNNQ-LTSLPTL---PSGLQELSVSDNQ-LASLPTLP-SELYKLWAYNNRL 374 (788)
T ss_pred ECCCCc-c-ccCCCC-----cccccccccccCc-ccccccc---ccccceEecCCCc-cCCCCCCC-cccceehhhcccc
Confidence 777653 3 334431 1346666676665 4556541 2468888888865 66677543 4788888888888
Q ss_pred cccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCcccchhhhC
Q 041067 665 EELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIERIPKSISQ 744 (770)
Q Consensus 665 ~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp~~l~~ 744 (770)
..+|.. +.+|+.|++++|.. ..+|.. .++|+.|++++|. +..+|.. +.+|+.|++++|.++.+|..+.+
T Consensus 375 ~~LP~l---~~~L~~LdLs~N~L-t~LP~l---~s~L~~LdLS~N~-LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~ 443 (788)
T PRK15387 375 TSLPAL---PSGLKELIVSGNRL-TSLPVL---PSELKELMVSGNR-LTSLPML---PSGLLSLSVYRNQLTRLPESLIH 443 (788)
T ss_pred ccCccc---ccccceEEecCCcc-cCCCCc---ccCCCEEEccCCc-CCCCCcc---hhhhhhhhhccCcccccChHHhh
Confidence 888753 35788999998874 457753 3679999999976 4567764 35788899999999999999999
Q ss_pred CCCCcEEecccCc
Q 041067 745 LLMLRYLLLSYSE 757 (770)
Q Consensus 745 l~~L~~L~l~~c~ 757 (770)
+++|+.|++++|+
T Consensus 444 L~~L~~LdLs~N~ 456 (788)
T PRK15387 444 LSSETTVNLEGNP 456 (788)
T ss_pred ccCCCeEECCCCC
Confidence 9999999999998
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=7.4e-15 Score=168.25 Aligned_cols=218 Identities=22% Similarity=0.190 Sum_probs=170.7
Q ss_pred CCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccccccccCcCCcEE
Q 041067 505 PKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDCVKHYRKLNQI 584 (770)
Q Consensus 505 ~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L 584 (770)
++|+.|.+.+|.++. +|. ++ ++|++|++.+|.++.+|.. +.+|+.|++.+|.+..+|.. +.+|+.|
T Consensus 222 ~~L~~L~L~~N~Lt~-LP~----lp----~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L 287 (788)
T PRK15387 222 AHITTLVIPDNNLTS-LPA----LP----PELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPAL---PSGLCKL 287 (788)
T ss_pred cCCCEEEccCCcCCC-CCC----CC----CCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhc---hhhcCEE
Confidence 479999999998875 442 33 6899999999999999864 47899999999999988763 3678899
Q ss_pred ccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccccCccEEeccCcCc
Q 041067 585 IPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISSGNISWLFLRETAI 664 (770)
Q Consensus 585 ~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~l~~~~i 664 (770)
++++|. + ..+|. .+++|+.|+|++|. +..+|.. ..+|+.|++++|. ++.+|... .+|+.|++++|.+
T Consensus 288 ~Ls~N~-L-t~LP~-----~p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~lp-~~Lq~LdLS~N~L 354 (788)
T PRK15387 288 WIFGNQ-L-TSLPV-----LPPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQ-LTSLPTLP-SGLQELSVSDNQL 354 (788)
T ss_pred ECcCCc-c-ccccc-----cccccceeECCCCc-cccCCCC---cccccccccccCc-cccccccc-cccceEecCCCcc
Confidence 998864 4 45554 24679999999986 6667763 2468889999876 66777533 5899999999999
Q ss_pred cccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCcccchhhhC
Q 041067 665 EELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIERIPKSISQ 744 (770)
Q Consensus 665 ~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp~~l~~ 744 (770)
..+|.. ..+|+.|++++|.. ..+|.. +.+|+.|++++|.. ..+|.. .++|+.|++++|.++.+|...
T Consensus 355 s~LP~l---p~~L~~L~Ls~N~L-~~LP~l---~~~L~~LdLs~N~L-t~LP~l---~s~L~~LdLS~N~LssIP~l~-- 421 (788)
T PRK15387 355 ASLPTL---PSELYKLWAYNNRL-TSLPAL---PSGLKELIVSGNRL-TSLPVL---PSELKELMVSGNRLTSLPMLP-- 421 (788)
T ss_pred CCCCCC---Ccccceehhhcccc-ccCccc---ccccceEEecCCcc-cCCCCc---ccCCCEEEccCCcCCCCCcch--
Confidence 999863 35788899998874 567764 35799999999764 467754 468999999999999998643
Q ss_pred CCCCcEEecccCccCCcCCC
Q 041067 745 LLMLRYLLLSYSESLQSSPK 764 (770)
Q Consensus 745 l~~L~~L~l~~c~~L~~lP~ 764 (770)
.+|+.|++++|. ++++|+
T Consensus 422 -~~L~~L~Ls~Nq-Lt~LP~ 439 (788)
T PRK15387 422 -SGLLSLSVYRNQ-LTRLPE 439 (788)
T ss_pred -hhhhhhhhccCc-ccccCh
Confidence 468899999987 888875
No 18
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.56 E-value=3.3e-16 Score=145.12 Aligned_cols=109 Identities=30% Similarity=0.454 Sum_probs=94.1
Q ss_pred hhhhhhhhcCCCCCCCcchHHHHHHHHhccceeEeecCCccCchhhHHHHHHHHHhhccCC--cEEEeEEEEecCCccc-
Q 041067 12 YKVAELIKRRGVHGGDEISKSLVNVIEASAISVIVFSEGYASSRSCLDELVKILECKKEYA--QIVIPFFYRVDPSDVR- 88 (770)
Q Consensus 12 ~~~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~ivv~s~~y~~s~~cl~El~~i~~~~~~~~--~~v~pvf~~v~p~~vr- 88 (770)
+++..|++++++.+|..+.+++.+||++|+++|+|||++|++|.||+.|+..++++....+ .+|+|+||+|.+++++
T Consensus 27 ~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~~~~~~~~~~~~Il~v~~~v~~~~~~~ 106 (141)
T PF01582_consen 27 YGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEALERLLEEGRDKLILPVFYDVSPSDVRP 106 (141)
T ss_dssp STS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHHHHHHCSTCTTEEEEESSSS-CHHCHT
T ss_pred CCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhhhhccccccccceeeEeccCChhhcCh
Confidence 4566789999999999999999999999999999999999999999999999999965544 9999999999999999
Q ss_pred cccCcHHHHHHHHHHHhhhh--hHHHHHHHHHHH
Q 041067 89 NQTGSFGDSFSKLEERLKEN--TEKLRSWRKALK 120 (770)
Q Consensus 89 ~~~~~~~~~f~~~~~~~~~~--~~~v~~w~~al~ 120 (770)
++.+.|...|.......+.. ......|++++.
T Consensus 107 ~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 107 DQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 79999998887776654443 467889998864
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.6e-16 Score=142.51 Aligned_cols=181 Identities=23% Similarity=0.323 Sum_probs=137.2
Q ss_pred CCCCCCCcccccccccCCCCccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCC
Q 041067 548 SLPSNLSAEKLMLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIF 627 (770)
Q Consensus 548 ~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~ 627 (770)
.+|..|++.+.+.|-+++|.+..+|..+..+.+|+.|+++++. + .++|. .++.+++|++|++.-|+ +..+|..+|
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-i-e~lp~--~issl~klr~lnvgmnr-l~~lprgfg 99 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-I-EELPT--SISSLPKLRILNVGMNR-LNILPRGFG 99 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-h-hhcCh--hhhhchhhhheecchhh-hhcCccccC
Confidence 4566667777777777777777777777777788877777644 2 45554 56777888888888776 778899999
Q ss_pred CCCCCcEEEecCCCCC-CccCCccc--cCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEE
Q 041067 628 NLEFLTKLNLSGCSKL-KRLPEISS--GNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVL 704 (770)
Q Consensus 628 ~l~~L~~L~L~~~~~l-~~lp~~~~--~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L 704 (770)
.++-|+.|++.+|..- ..+|..+. ..|+.|+++.|.++.+|..++++++|+.|.+.+|. +-++|..++.++.|+.|
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLREL 178 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHH
Confidence 9999999999887643 35677665 78888899999999999999999999999999876 56788889999999999
Q ss_pred EeecCCCCcccCcccCCCCC---CcEEEccCCCC
Q 041067 705 NLSGCSNLQRLPECLAQFSS---PIILNLAKTNI 735 (770)
Q Consensus 705 ~l~~~~~~~~lp~~l~~l~~---L~~L~L~~~~l 735 (770)
++.+| .+..+|..++++.- =+.+.+..|++
T Consensus 179 hiqgn-rl~vlppel~~l~l~~~k~v~r~E~NPw 211 (264)
T KOG0617|consen 179 HIQGN-RLTVLPPELANLDLVGNKQVMRMEENPW 211 (264)
T ss_pred hcccc-eeeecChhhhhhhhhhhHHHHhhhhCCC
Confidence 99884 46677776655432 23344445553
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.53 E-value=7.5e-16 Score=170.89 Aligned_cols=239 Identities=23% Similarity=0.318 Sum_probs=169.3
Q ss_pred CCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCC-cccccccccCCCCccccccccccCcCCcE
Q 041067 505 PKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLS-AEKLMLLEVPDSDIEQLWDCVKHYRKLNQ 583 (770)
Q Consensus 505 ~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~-~~~L~~L~l~~~~i~~l~~~~~~l~~L~~ 583 (770)
++|+.|....|.+... .....| .+|.+++++.+.+..+|+++. +.+|+.++..+|++..+|..+....+|+.
T Consensus 219 ~~l~~L~a~~n~l~~~---~~~p~p----~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~ 291 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTL---DVHPVP----LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVS 291 (1081)
T ss_pred cchheeeeccCcceee---cccccc----ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHH
Confidence 4566666666655532 112223 577777887777777886654 57788888888888777777777777777
Q ss_pred EccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCC--------------------------CCCCCcEEEe
Q 041067 584 IIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIF--------------------------NLEFLTKLNL 637 (770)
Q Consensus 584 L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~--------------------------~l~~L~~L~L 637 (770)
|.+..|.. ..+|. ....+++|++|+|..|+ +..+|+.+- .++.|+.|.+
T Consensus 292 l~~~~nel--~yip~--~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyl 366 (1081)
T KOG0618|consen 292 LSAAYNEL--EYIPP--FLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYL 366 (1081)
T ss_pred HHhhhhhh--hhCCC--cccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHH
Confidence 77777543 45554 34557888888888877 666664221 1123444555
Q ss_pred cCCCCCC-ccCCccc-cCccEEeccCcCccccCcc-cccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcc
Q 041067 638 SGCSKLK-RLPEISS-GNISWLFLRETAIEELPSS-IERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQR 714 (770)
Q Consensus 638 ~~~~~l~-~lp~~~~-~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~ 714 (770)
.+|.... .+|...+ .+|+.|+|++|.+..+|.+ +.++..|+.|+|++|+ ++.+|..+.++..|++|...+| .+..
T Consensus 367 anN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN-~l~~ 444 (1081)
T KOG0618|consen 367 ANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSN-QLLS 444 (1081)
T ss_pred hcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCC-ceee
Confidence 5554332 3454444 7889999999999988876 6788889999999977 6788888888999999888764 4567
Q ss_pred cCcccCCCCCCcEEEccCCCCc--ccchhhhCCCCCcEEecccCccC
Q 041067 715 LPECLAQFSSPIILNLAKTNIE--RIPKSISQLLMLRYLLLSYSESL 759 (770)
Q Consensus 715 lp~~l~~l~~L~~L~L~~~~l~--~lp~~l~~l~~L~~L~l~~c~~L 759 (770)
+| .+..+++|+.++++.|+++ .+|..... ++|++|+++||.++
T Consensus 445 fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 445 FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRL 489 (1081)
T ss_pred ch-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCccc
Confidence 88 6889999999999999988 55554433 79999999999853
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.51 E-value=4.1e-16 Score=172.97 Aligned_cols=68 Identities=21% Similarity=0.287 Sum_probs=40.2
Q ss_pred cccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCC-cccccccccCCCCcccccc
Q 041067 500 TFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLS-AEKLMLLEVPDSDIEQLWD 573 (770)
Q Consensus 500 ~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~-~~~L~~L~l~~~~i~~l~~ 573 (770)
.+..+.+|+.|.++.|.+.. .|.+.. .+++|++|.+.++.+..+|.++. +++|++|+++.|++...|.
T Consensus 63 ~it~l~~L~~ln~s~n~i~~-vp~s~~-----~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl 131 (1081)
T KOG0618|consen 63 QITLLSHLRQLNLSRNYIRS-VPSSCS-----NMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPL 131 (1081)
T ss_pred hhhhHHHHhhcccchhhHhh-Cchhhh-----hhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCch
Confidence 34445555555555554433 232222 33577777777777777776664 5777777777776655543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=9.6e-16 Score=137.49 Aligned_cols=159 Identities=23% Similarity=0.322 Sum_probs=74.2
Q ss_pred cCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc--cCc
Q 041067 577 HYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS--GNI 654 (770)
Q Consensus 577 ~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~--~~L 654 (770)
.+.+.+.|.|+++. + ..+|. .+.+|.+|++|++++|. ++.+|.+++.|++|+.|+++-|. +..+|..++ +.|
T Consensus 31 ~~s~ITrLtLSHNK-l-~~vpp--nia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~l 104 (264)
T KOG0617|consen 31 NMSNITRLTLSHNK-L-TVVPP--NIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPAL 104 (264)
T ss_pred chhhhhhhhcccCc-e-eecCC--cHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCCchh
Confidence 34445555555532 2 22222 34455555555555444 55555555555555555555432 334444443 444
Q ss_pred cEEeccCcCcc--ccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccC
Q 041067 655 SWLFLRETAIE--ELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAK 732 (770)
Q Consensus 655 ~~L~l~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~ 732 (770)
+.||+..|++. .+|..+..++.|+.|.+++|. .+.+|..++++++|+.|.+..|. +-++|..++.++.|++|.+.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhccc
Confidence 44444444443 344444444444444444443 23444444445555544444432 223444444444455555555
Q ss_pred CCCcccchhhh
Q 041067 733 TNIERIPKSIS 743 (770)
Q Consensus 733 ~~l~~lp~~l~ 743 (770)
|.++-+|..++
T Consensus 183 nrl~vlppel~ 193 (264)
T KOG0617|consen 183 NRLTVLPPELA 193 (264)
T ss_pred ceeeecChhhh
Confidence 44444444433
No 23
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.38 E-value=6e-11 Score=145.28 Aligned_cols=278 Identities=13% Similarity=0.150 Sum_probs=175.0
Q ss_pred cCCCCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHH
Q 041067 156 RPRDNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCL 235 (770)
Q Consensus 156 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 235 (770)
.+|.....+|-|..-++.+.. ....+++.|.|++|.||||++..+..+ ++.++|+. +.+... +...+
T Consensus 8 ~~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~-l~~~d~---~~~~f 74 (903)
T PRK04841 8 SRPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYS-LDESDN---QPERF 74 (903)
T ss_pred CCCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEe-cCcccC---CHHHH
Confidence 566677789999877666642 235789999999999999999998854 33688986 332221 33344
Q ss_pred HHHHHHHHhcCCC-------------C-c---chHHHHHHHHC--CCcEEEEEeCCCChH--hHH-HHHhcccCCCCCce
Q 041067 236 QQKLLSNLLKHKN-------------V-M---PFIDLIFRRLS--RMKVLIVFDDVTCLS--QLQ-SLIGSLYWLTPVSR 293 (770)
Q Consensus 236 ~~~ll~~~~~~~~-------------~-~---~~~~~l~~~L~--~kr~LlVLDdv~~~~--~~~-~l~~~~~~~~~gs~ 293 (770)
...++..+..... . . .....+...+. +.+++|||||+...+ ... .+...+....++.+
T Consensus 75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~ 154 (903)
T PRK04841 75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLT 154 (903)
T ss_pred HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeE
Confidence 4444444421000 0 1 12222333333 678999999997653 222 23222334466778
Q ss_pred EEEEcCchhhhhh--c-CcceEEEeC----ccChHHHHHHHH---------------HhccCCCchhHHHHhhHhcCCCH
Q 041067 294 IIITTRNKQVLRN--W-GVRKIYEMK----ALEYHHAIELFI---------------MKYAQGVPLALKVLGCFLYEREK 351 (770)
Q Consensus 294 IivTTR~~~v~~~--~-~~~~~~~l~----~L~~~ea~~Lf~---------------~~~~~glPLal~~~g~~L~~~~~ 351 (770)
+|||||...-... . ......++. +|+.+|+.++|. .+.++|.|+++..++..+.....
T Consensus 155 lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~ 234 (903)
T PRK04841 155 LVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNS 234 (903)
T ss_pred EEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCC
Confidence 9999998421111 1 112345555 899999999995 89999999999988877654321
Q ss_pred HHHHHHHHHHHhccchhHHHHHHH-hHhcCCHHHHHHHhhcccccCCCChhHHHHHHHhcCCCchhhHHHhhhccceeE-
Q 041067 352 EVWESAIDKLQRILLASIFEVLKI-SYDSLDDKEKNIFLDVACFFQGEDVDPVMKFFNASGFYPEIGMSVLVDKSLIAI- 429 (770)
Q Consensus 352 ~~w~~~l~~l~~~~~~~i~~~l~~-sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~~~~L~~~sLi~~- 429 (770)
. -......+...+...+...+.- .++.||++.+..++..|+++ .++.+.+..+.. .-.....++.|.+.+++..
T Consensus 235 ~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~--~~~~~~~L~~l~~~~l~~~~ 310 (903)
T PRK04841 235 S-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTG--EENGQMRLEELERQGLFIQR 310 (903)
T ss_pred c-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcC--CCcHHHHHHHHHHCCCeeEe
Confidence 0 0111111211123345555443 37899999999999999986 566554444432 1123567899999999653
Q ss_pred ec--CCeEEecHHHHHHHHHHHh
Q 041067 430 DS--YNKITMHDLLQELGKEIVR 450 (770)
Q Consensus 430 ~~--~~~~~mHdl~~~~~~~i~~ 450 (770)
.+ ...|..|++++++.+....
T Consensus 311 ~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 311 MDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred ecCCCCEEehhHHHHHHHHHHHH
Confidence 22 2368999999999887663
No 24
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.26 E-value=1.2e-11 Score=114.79 Aligned_cols=108 Identities=39% Similarity=0.583 Sum_probs=86.4
Q ss_pred hhhhhhhcCCCCCCCcchHHHHHHHHhccceeEeecCCccCchhhHHHHHHHHHhhcc-CCcEEEeEEEEecCCcccccc
Q 041067 13 KVAELIKRRGVHGGDEISKSLVNVIEASAISVIVFSEGYASSRSCLDELVKILECKKE-YAQIVIPFFYRVDPSDVRNQT 91 (770)
Q Consensus 13 ~~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~ivv~s~~y~~s~~cl~El~~i~~~~~~-~~~~v~pvf~~v~p~~vr~~~ 91 (770)
++.+|.|+... .|.... ++.+||++|++.|+|+|++|..|.||..|+..++++... ....||||+|+..|+++..+.
T Consensus 30 ~~~v~~d~~~~-~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~ 107 (140)
T smart00255 30 GLCVFIDDFEP-GGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQP 107 (140)
T ss_pred CcEEEecCccc-ccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHHHHHHHHcCCCeEEEEEEecChHHHHhcc
Confidence 45578877644 333333 999999999999999999999999999999999997543 668999999999899999999
Q ss_pred CcHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 041067 92 GSFGDSFSKLEERLKENTEKLRSWRKALKEAA 123 (770)
Q Consensus 92 ~~~~~~f~~~~~~~~~~~~~v~~w~~al~~~a 123 (770)
+.++.++..+..+..+...+ ..|++.+..++
T Consensus 108 ~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~ 138 (140)
T smart00255 108 GKFRKVLKKNYLKWPEDEKE-RFWKKALYAVP 138 (140)
T ss_pred cHHHHHHHHHHhhcCCchhH-HHHHHHHHHhc
Confidence 99999988874433333322 68999887664
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.25 E-value=5.4e-13 Score=141.04 Aligned_cols=207 Identities=23% Similarity=0.346 Sum_probs=168.5
Q ss_pred EcCCCCCCCCCC---CCcccccccccCCCCccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCC
Q 041067 541 WYGYPLKSLPSN---LSAEKLMLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSK 617 (770)
Q Consensus 541 l~~~~l~~lp~~---~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~ 617 (770)
+++-.++.+|.. ..+..-+..+++.|.+..+|...+.+..|..+.|.++.. ..+|. .+.++..|.+|||+.|.
T Consensus 57 Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~--r~ip~--~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 57 LSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCI--RTIPE--AICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccc--eecch--hhhhhhHHHHhhhccch
Confidence 444444555531 334556678888888989998888888888888876443 34554 57888999999999887
Q ss_pred CCcccCccCCCCCCCcEEEecCCCCCCccCCccc--cCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCccc
Q 041067 618 SLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS--GNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSL 695 (770)
Q Consensus 618 ~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l 695 (770)
+..+|..++.|+ |+.|-+++|. ++.+|+.++ ..|..|+.+.|.+..+|+.++.+.+|+.|++..|. +..+|..+
T Consensus 133 -lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El 208 (722)
T KOG0532|consen 133 -LSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEEL 208 (722)
T ss_pred -hhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHH
Confidence 888999998887 9999999865 888888877 78889999999999999999999999999999987 56788888
Q ss_pred CCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCcccchhhh---CCCCCcEEecccCc
Q 041067 696 WMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIERIPKSIS---QLLMLRYLLLSYSE 757 (770)
Q Consensus 696 ~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp~~l~---~l~~L~~L~l~~c~ 757 (770)
..|+ |..||++. +.+..+|-+|.+|..|++|.|.+|++++-|..|+ ...-.++|++.-|+
T Consensus 209 ~~Lp-Li~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 209 CSLP-LIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hCCc-eeeeeccc-CceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 8665 99999986 5678899999999999999999999999888774 44456788888884
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.20 E-value=1.7e-12 Score=138.74 Aligned_cols=253 Identities=19% Similarity=0.115 Sum_probs=138.7
Q ss_pred cccCCCCCceEEEecCCCCCC----ccCCccCCCCCCCCceeEEEEcCCCCCCCCCC-------C-CcccccccccCCCC
Q 041067 500 TFTKMPKLRFLKFYSSSFNGE----NKCKISYLQDPGFGEVKYLHWYGYPLKSLPSN-------L-SAEKLMLLEVPDSD 567 (770)
Q Consensus 500 ~~~~l~~Lr~L~l~~~~l~~~----~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~-------~-~~~~L~~L~l~~~~ 567 (770)
.|..+.+|+.|.+.++.+... ++..+... +.++.|.+.++.+...|.. + .+.+|+.|+++++.
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~-----~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQ-----PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhC-----CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 355667788888888876542 12122222 3677888877765532221 1 23577777777776
Q ss_pred ccc-cccccccC---cCCcEEccCcCcCccccCCC-CCCCCCc-cceeEEeccCCCCCc----ccCccCCCCCCCcEEEe
Q 041067 568 IEQ-LWDCVKHY---RKLNQIIPAACNKLIAKTPN-PMLMPRL-NKLVLLNLRGSKSLK----RLPSRIFNLEFLTKLNL 637 (770)
Q Consensus 568 i~~-l~~~~~~l---~~L~~L~L~~~~~l~~~~p~-~~~~~~L-~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~L 637 (770)
+.. .+..+..+ ++|+.|++++|..-....+. ...+..+ ++|+.|++++|.... .++..+..+++|++|++
T Consensus 93 ~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l 172 (319)
T cd00116 93 LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL 172 (319)
T ss_pred CChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEEC
Confidence 652 23333333 34777777776421000000 0123344 677777777777442 23334455667777777
Q ss_pred cCCCCCC----ccCCccc--cCccEEeccCcCcc-----ccCcccccCCCCCEEeccCCCCCCCCCccc-----CCCCCC
Q 041067 638 SGCSKLK----RLPEISS--GNISWLFLRETAIE-----ELPSSIERLHRLGYLDLLDCKRLKSLPRSL-----WMLKSL 701 (770)
Q Consensus 638 ~~~~~l~----~lp~~~~--~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l-----~~l~~L 701 (770)
++|.... .++.... .+|++|++++|.+. .++..+..+++|++|++++|.....-+..+ ...+.|
T Consensus 173 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L 252 (319)
T cd00116 173 ANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISL 252 (319)
T ss_pred cCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCc
Confidence 7776331 1111111 46777777777654 344455666777777777776432111111 123677
Q ss_pred cEEEeecCCCC----cccCcccCCCCCCcEEEccCCCCcc-----cchhhhCC-CCCcEEecccCc
Q 041067 702 GVLNLSGCSNL----QRLPECLAQFSSPIILNLAKTNIER-----IPKSISQL-LMLRYLLLSYSE 757 (770)
Q Consensus 702 ~~L~l~~~~~~----~~lp~~l~~l~~L~~L~L~~~~l~~-----lp~~l~~l-~~L~~L~l~~c~ 757 (770)
++|++++|... ..++..+..+++|+.+++++|.++. +...+... +.|+.|++.+++
T Consensus 253 ~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred eEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 77777776543 2334445556777777777777662 33334444 567777776664
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.13 E-value=4.7e-12 Score=135.28 Aligned_cols=233 Identities=18% Similarity=0.065 Sum_probs=140.8
Q ss_pred ccCCCCCceEEEecCCCCCCccCCccCCC--CCCCCceeEEEEcCCCCCC-CCCCCC-c---ccccccccCCCCcc----
Q 041067 501 FTKMPKLRFLKFYSSSFNGENKCKISYLQ--DPGFGEVKYLHWYGYPLKS-LPSNLS-A---EKLMLLEVPDSDIE---- 569 (770)
Q Consensus 501 ~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~--~~~l~~Lr~L~l~~~~l~~-lp~~~~-~---~~L~~L~l~~~~i~---- 569 (770)
+...++|+.|+++++.+.+ .+..+..++ ...+.+|+.|++.++++.. .+..+. + .+|++|++++|.+.
T Consensus 47 l~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~ 125 (319)
T cd00116 47 LRPQPSLKELCLSLNETGR-IPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL 125 (319)
T ss_pred HhhCCCceEEeccccccCC-cchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH
Confidence 4455667777776665542 111111100 0113477777777776653 222111 1 34777888777765
Q ss_pred -ccccccccC-cCCcEEccCcCcCccccCC--CCCCCCCccceeEEeccCCCCCc----ccCccCCCCCCCcEEEecCCC
Q 041067 570 -QLWDCVKHY-RKLNQIIPAACNKLIAKTP--NPMLMPRLNKLVLLNLRGSKSLK----RLPSRIFNLEFLTKLNLSGCS 641 (770)
Q Consensus 570 -~l~~~~~~l-~~L~~L~L~~~~~l~~~~p--~~~~~~~L~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~L~~~~ 641 (770)
.+...+..+ ++|+.|++++|..- ...+ ....+..+++|++|++++|.... .++..+..+++|++|++++|.
T Consensus 126 ~~l~~~l~~~~~~L~~L~L~~n~l~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 126 RLLAKGLKDLPPALEKLVLGRNRLE-GASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred HHHHHHHHhCCCCceEEEcCCCcCC-chHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence 233445566 78888888887532 1100 11134455678888988887442 234444556789999998886
Q ss_pred CCC----ccCCccc--cCccEEeccCcCccc-----cCcccc-cCCCCCEEeccCCCCC----CCCCcccCCCCCCcEEE
Q 041067 642 KLK----RLPEISS--GNISWLFLRETAIEE-----LPSSIE-RLHRLGYLDLLDCKRL----KSLPRSLWMLKSLGVLN 705 (770)
Q Consensus 642 ~l~----~lp~~~~--~~L~~L~l~~~~i~~-----lp~~i~-~l~~L~~L~L~~~~~~----~~lp~~l~~l~~L~~L~ 705 (770)
... .++.... ++|++|++++|.+.. +...+. ..+.|++|++++|... ..++..+..+++|+.|+
T Consensus 205 i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~ 284 (319)
T cd00116 205 LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELD 284 (319)
T ss_pred cChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 321 1222222 679999999887763 111111 2479999999999864 23445667779999999
Q ss_pred eecCCCCcc----cCcccCCC-CCCcEEEccCCCC
Q 041067 706 LSGCSNLQR----LPECLAQF-SSPIILNLAKTNI 735 (770)
Q Consensus 706 l~~~~~~~~----lp~~l~~l-~~L~~L~L~~~~l 735 (770)
+++|..... +...+... +.|+.|++..+++
T Consensus 285 l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 285 LRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 999887643 45555556 7899999887754
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=2.3e-12 Score=136.40 Aligned_cols=193 Identities=27% Similarity=0.310 Sum_probs=160.6
Q ss_pred ccccCCCCccccccccccCcCC---cEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEE
Q 041067 560 LLEVPDSDIEQLWDCVKHYRKL---NQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLN 636 (770)
Q Consensus 560 ~L~l~~~~i~~l~~~~~~l~~L---~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 636 (770)
.|.|++..++.+|-+-.. ..| ...+|+.+.+ ..+|. .+..+..|+.|.|..|. +..+|..++++..|.+|+
T Consensus 54 ~l~Ls~rrlk~fpr~a~~-~~ltdt~~aDlsrNR~--~elp~--~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ 127 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAAS-YDLTDTVFADLSRNRF--SELPE--EACAFVSLESLILYHNC-IRTIPEAICNLEALTFLD 127 (722)
T ss_pred ccccccchhhcCCCcccc-ccccchhhhhcccccc--ccCch--HHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhh
Confidence 466677777777655433 333 3456666544 45554 56677888888888776 788999999999999999
Q ss_pred ecCCCCCCccCCccc-cCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCccc
Q 041067 637 LSGCSKLKRLPEISS-GNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRL 715 (770)
Q Consensus 637 L~~~~~l~~lp~~~~-~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~l 715 (770)
|+.|. +..+|.... --|+.|.+++|+++.+|..++.+..|..|+.+.|. +..+|..++.+.+|+.|++..|. +..+
T Consensus 128 ls~Nq-lS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~-l~~l 204 (722)
T KOG0532|consen 128 LSSNQ-LSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNH-LEDL 204 (722)
T ss_pred hccch-hhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhh-hhhC
Confidence 99987 777887766 77999999999999999999999999999999987 57889999999999999999854 6778
Q ss_pred CcccCCCCCCcEEEccCCCCcccchhhhCCCCCcEEecccCccCCcCC
Q 041067 716 PECLAQFSSPIILNLAKTNIERIPKSISQLLMLRYLLLSYSESLQSSP 763 (770)
Q Consensus 716 p~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~L~~lP 763 (770)
|+.++.|+ |..|+++.|++..+|-.+.+|+.|+.|-|.+|+ |++-|
T Consensus 205 p~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPP 250 (722)
T KOG0532|consen 205 PEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPP 250 (722)
T ss_pred CHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCC-CCCCh
Confidence 88888664 899999999999999999999999999999999 87766
No 29
>PF05729 NACHT: NACHT domain
Probab=99.08 E-value=1.4e-09 Score=103.89 Aligned_cols=139 Identities=24% Similarity=0.348 Sum_probs=86.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCC------CceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDF------EGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRR 259 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~ 259 (770)
|++.|+|.+|+||||+++.++.++.... ...+|+. .++..... ....+...+......... .....+...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~l~~~~~~~~~--~~~~~~~~~ 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDSN-NSRSLADLLFDQLPESIA--PIEELLQEL 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhcc-ccchHHHHHHHhhccchh--hhHHHHHHH
Confidence 5789999999999999999999865543 3444443 44443322 222344433333322111 111122222
Q ss_pred H-CCCcEEEEEeCCCChHh---------HHHHHhcc-cC-CCCCceEEEEcCchhh---hhhcCcceEEEeCccChHHHH
Q 041067 260 L-SRMKVLIVFDDVTCLSQ---------LQSLIGSL-YW-LTPVSRIIITTRNKQV---LRNWGVRKIYEMKALEYHHAI 324 (770)
Q Consensus 260 L-~~kr~LlVLDdv~~~~~---------~~~l~~~~-~~-~~~gs~IivTTR~~~v---~~~~~~~~~~~l~~L~~~ea~ 324 (770)
+ +.++++||+|++++... +..++..+ .. ..++.+++||||.... .........+++++|++++..
T Consensus 77 ~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 156 (166)
T PF05729_consen 77 LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIK 156 (166)
T ss_pred HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHH
Confidence 2 57889999999976442 22233222 21 3578999999998766 233444568999999999999
Q ss_pred HHHH
Q 041067 325 ELFI 328 (770)
Q Consensus 325 ~Lf~ 328 (770)
+++.
T Consensus 157 ~~~~ 160 (166)
T PF05729_consen 157 QYLR 160 (166)
T ss_pred HHHH
Confidence 8873
No 30
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.04 E-value=1.8e-08 Score=110.99 Aligned_cols=167 Identities=17% Similarity=0.211 Sum_probs=105.8
Q ss_pred cCCCCCCCcccchHHHHHHHHhhcCC--CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCC--ceEEEEecchhhccCCC
Q 041067 156 RPRDNKNKLVGVESKVEEIESILGVE--SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFE--GSCFLENVREESQRSGG 231 (770)
Q Consensus 156 ~~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~ 231 (770)
.+...++.++||++++++|...+... ......+.|+|++|+|||++++.++++...... ..+++. .... . .
T Consensus 24 ~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-~~~~---~-~ 98 (394)
T PRK00411 24 EPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-CQID---R-T 98 (394)
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-CCcC---C-C
Confidence 44456778999999999999988432 233456789999999999999999998765542 233333 2222 1 4
Q ss_pred HHHHHHHHHHHHhcCCC-C-----cchHHHHHHHHC--CCcEEEEEeCCCChH------hHHHHHhcccCCCCCce--EE
Q 041067 232 LSCLQQKLLSNLLKHKN-V-----MPFIDLIFRRLS--RMKVLIVFDDVTCLS------QLQSLIGSLYWLTPVSR--II 295 (770)
Q Consensus 232 ~~~l~~~ll~~~~~~~~-~-----~~~~~~l~~~L~--~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gs~--Ii 295 (770)
...+...++.++..... . .+....+.+.+. +++.+||||+++... .+..+...... .++++ +|
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI 177 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVI 177 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEE
Confidence 45666777777754211 1 134556666664 456899999998753 23343332221 13333 56
Q ss_pred EEcCchhhhhhcC-------cceEEEeCccChHHHHHHHH
Q 041067 296 ITTRNKQVLRNWG-------VRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 296 vTTR~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~ 328 (770)
.++.+.++..... ....+.+++++.++..+++.
T Consensus 178 ~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~ 217 (394)
T PRK00411 178 GISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILK 217 (394)
T ss_pred EEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHH
Confidence 6666554433211 12467899999999888876
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.01 E-value=9.9e-12 Score=126.16 Aligned_cols=244 Identities=16% Similarity=0.104 Sum_probs=134.3
Q ss_pred EecCCcceeeecCcccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcC-CCCCCCCCCC--Cccccccc
Q 041067 485 CLDMSKVKEIHLNPSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYG-YPLKSLPSNL--SAEKLMLL 561 (770)
Q Consensus 485 ~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~-~~l~~lp~~~--~~~~L~~L 561 (770)
.+++.....-.+++.+|+.+++||.|++++|.++..-|..+..++ .|-.|-+.| |.++.+|+.. .+..|+.|
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~-----~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA-----SLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhH-----hhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 344444445567789999999999999999999887777777665 555555555 8899998643 35667777
Q ss_pred ccCCCCcccccc-ccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCC------------cccCccCCC
Q 041067 562 EVPDSDIEQLWD-CVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSL------------KRLPSRIFN 628 (770)
Q Consensus 562 ~l~~~~i~~l~~-~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l------------~~lp~~i~~ 628 (770)
.+.-+++.-++. .+..+++|..|.+..+.. ..++. ..+..+..++.+.+..|... ...|.+.+.
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~--q~i~~-~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKI--QSICK-GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhh--hhhcc-ccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 777666665443 355666666666655331 22222 23445555555555544411 111211211
Q ss_pred CCCCcEE-------------------------EecCCCCCCccCCccc---cCccEEeccCcCccccC-cccccCCCCCE
Q 041067 629 LEFLTKL-------------------------NLSGCSKLKRLPEISS---GNISWLFLRETAIEELP-SSIERLHRLGY 679 (770)
Q Consensus 629 l~~L~~L-------------------------~L~~~~~l~~lp~~~~---~~L~~L~l~~~~i~~lp-~~i~~l~~L~~ 679 (770)
..-.... -.+.|......|..-. ++|++|++++|.++.+- .++..+..++.
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence 1111111 1111211222222111 55666666666666543 34556666666
Q ss_pred EeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCc
Q 041067 680 LDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIE 736 (770)
Q Consensus 680 L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~ 736 (770)
|.|..|+.-..-...+.++..|++|+|.+|++....|..|..+.+|.+|.+-+|++.
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 666665532111122455666666666666655556666666666666666655543
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.95 E-value=4.9e-10 Score=131.80 Aligned_cols=224 Identities=21% Similarity=0.231 Sum_probs=100.5
Q ss_pred ceeEEEEcCCCCCCCCCCCCcccccccccCCCC--ccccccc-cccCcCCcEEccCcCcCccccCCCCCCCCCccceeEE
Q 041067 535 EVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSD--IEQLWDC-VKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLL 611 (770)
Q Consensus 535 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~--i~~l~~~-~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L 611 (770)
..|...+.++.+..++......+|+.|-+..+. +..++.. +..++.|+.|||++|..+ .++|. .+++|-+|++|
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l-~~LP~--~I~~Li~LryL 600 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL-SKLPS--SIGELVHLRYL 600 (889)
T ss_pred heeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc-CcCCh--HHhhhhhhhcc
Confidence 344444444444444444333344444444443 2333222 344555555555554444 44443 34445555555
Q ss_pred eccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc--cCccEEeccCcCccc---cCcccccCCCCCEEe-----
Q 041067 612 NLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS--GNISWLFLRETAIEE---LPSSIERLHRLGYLD----- 681 (770)
Q Consensus 612 ~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~l~~~~i~~---lp~~i~~l~~L~~L~----- 681 (770)
+|+++. +..+|..+++|++|.+|++..+..+..+|.... .+|++|.+....... .-..+..+.+|+.|.
T Consensus 601 ~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 601 DLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred cccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 555444 445555555555555555555444444433332 445544443322110 001112222222222
Q ss_pred ---------------------ccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCccc-----C-CCCCCcEEEccCCC
Q 041067 682 ---------------------LLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECL-----A-QFSSPIILNLAKTN 734 (770)
Q Consensus 682 ---------------------L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l-----~-~l~~L~~L~L~~~~ 734 (770)
+.+|. ....+..++.+.+|+.|.+.+|...+...... . .++++..+.+.+|.
T Consensus 680 ~~~~e~l~~~~~L~~~~~~l~~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~ 758 (889)
T KOG4658|consen 680 VLLLEDLLGMTRLRSLLQSLSIEGCS-KRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCH 758 (889)
T ss_pred hHhHhhhhhhHHHHHHhHhhhhcccc-cceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccc
Confidence 11211 23445567778888888888876643222111 1 13344444444444
Q ss_pred CcccchhhhCCCCCcEEecccCccCCcCC
Q 041067 735 IERIPKSISQLLMLRYLLLSYSESLQSSP 763 (770)
Q Consensus 735 l~~lp~~l~~l~~L~~L~l~~c~~L~~lP 763 (770)
.-..+.+....++|+.|.+.+|+.++.+.
T Consensus 759 ~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 759 MLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred cccccchhhccCcccEEEEecccccccCC
Confidence 44444444455666666666666554443
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.94 E-value=9.1e-09 Score=108.98 Aligned_cols=249 Identities=16% Similarity=0.183 Sum_probs=134.6
Q ss_pred CCcccchHHHHHHHHhhcCC---CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHH
Q 041067 162 NKLVGVESKVEEIESILGVE---SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQK 238 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (770)
..|||+++.++++..++... ......+.++|++|+|||+||+.+++.....+. +....... ....+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~~~----~~~~l~~- 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPALE----KPGDLAA- 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eeccchhc----CchhHHH-
Confidence 35999999999999888531 233556889999999999999999998754321 11111111 1111111
Q ss_pred HHHHHhcCC-------C--CcchHHHHHHHHCCCcEEEEEeCCCChHhHHHHHhcccCCCCCceEEEEcCchhhhhhc--
Q 041067 239 LLSNLLKHK-------N--VMPFIDLIFRRLSRMKVLIVFDDVTCLSQLQSLIGSLYWLTPVSRIIITTRNKQVLRNW-- 307 (770)
Q Consensus 239 ll~~~~~~~-------~--~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~-- 307 (770)
.+..+.... + .....+.+...+.+.+..+|+|+..+..++... ..+.+-|..|||...+....
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD------LPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec------CCCeEEEEecCCccccCHHHHh
Confidence 111111100 0 001122233333334444444444333322211 12355566777765443321
Q ss_pred CcceEEEeCccChHHHHHHHH------------------HhccCCCchhHHHHhhHhcCCCHHHHHHHHHHHHhc--c--
Q 041067 308 GVRKIYEMKALEYHHAIELFI------------------MKYAQGVPLALKVLGCFLYEREKEVWESAIDKLQRI--L-- 365 (770)
Q Consensus 308 ~~~~~~~l~~L~~~ea~~Lf~------------------~~~~~glPLal~~~g~~L~~~~~~~w~~~l~~l~~~--~-- 365 (770)
.....+.+++++.++..+++. ++.|+|.|-.+..++..+ |..+. ..... .
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~-~~~~~~it~~ 220 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQ-VRGQKIINRD 220 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHH-HcCCCCcCHH
Confidence 123578999999999999986 566666664443333221 11100 00000 0
Q ss_pred -chhHHHHHHHhHhcCCHHHHHHHh-hcccccCC-CChhHHHHHHHhcCCCchhhHH-HhhhccceeEecCC
Q 041067 366 -LASIFEVLKISYDSLDDKEKNIFL-DVACFFQG-EDVDPVMKFFNASGFYPEIGMS-VLVDKSLIAIDSYN 433 (770)
Q Consensus 366 -~~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~l~~~~~~~g~~~~~~~~-~L~~~sLi~~~~~~ 433 (770)
.......+...|.++++.++..+. .++.+..+ ...+.+...+..........++ .|++++||.....+
T Consensus 221 ~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g 292 (305)
T TIGR00635 221 IALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRG 292 (305)
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCch
Confidence 111222355677889998877666 44656433 5666777766555444555577 69999999755433
No 34
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.91 E-value=6.4e-09 Score=105.50 Aligned_cols=160 Identities=20% Similarity=0.337 Sum_probs=81.7
Q ss_pred cccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHH------H-
Q 041067 164 LVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCL------Q- 236 (770)
Q Consensus 164 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l------~- 236 (770)
|+||++++++|.+.+..+ ..+.+.|+|+.|+|||+|++++.+.....-...+|+......... ..... .
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNES--SLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHH--HHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhh--HHHHHHHHHHHHH
Confidence 789999999999998643 345799999999999999999999874433344454422221110 11111 1
Q ss_pred ---HHHHHHHhcCC----------CCcchHHHHHHHHC--CCcEEEEEeCCCChH----h----HHHHHhcc---cCCCC
Q 041067 237 ---QKLLSNLLKHK----------NVMPFIDLIFRRLS--RMKVLIVFDDVTCLS----Q----LQSLIGSL---YWLTP 290 (770)
Q Consensus 237 ---~~ll~~~~~~~----------~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~----~----~~~l~~~~---~~~~~ 290 (770)
+.+...+.... ........+.+.+. +++++||+||++... . ...+.... ....+
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 11111111100 01133344444443 356999999997655 1 12222222 22334
Q ss_pred CceEEEEcCchhhhhh--------cCcceEEEeCccChHHHHHHHH
Q 041067 291 VSRIIITTRNKQVLRN--------WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 291 gs~IivTTR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
.+.|+++|. ..+... .+....+.+++|+.+++++++.
T Consensus 157 ~~~v~~~S~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~ 201 (234)
T PF01637_consen 157 VSIVITGSS-DSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLK 201 (234)
T ss_dssp EEEEEEESS-HHHHHHTT-TTSTTTT---EEEE----HHHHHHHHH
T ss_pred ceEEEECCc-hHHHHHhhcccCccccccceEEEeeCCHHHHHHHHH
Confidence 444544444 333322 2333459999999999999986
No 35
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.91 E-value=4.1e-07 Score=99.03 Aligned_cols=167 Identities=14% Similarity=0.203 Sum_probs=100.7
Q ss_pred CCCCCCCcccchHHHHHHHHhhcC--CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCC------ceEEEEecchhhcc
Q 041067 157 PRDNKNKLVGVESKVEEIESILGV--ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFE------GSCFLENVREESQR 228 (770)
Q Consensus 157 ~~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~------~~~~~~~~~~~~~~ 228 (770)
+...++.++||++++++|...+.. .......+.|+|++|+|||++++++++.+....+ ..+|+. ....
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in-~~~~--- 85 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN-CQIL--- 85 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE-CCCC---
Confidence 344556899999999999998863 2233557899999999999999999988653322 234443 2222
Q ss_pred CCCHHHHHHHHHHHHhc--CC-C--C---cchHHHHHHHHC--CCcEEEEEeCCCChH-h----HHHHHhcccC-CC--C
Q 041067 229 SGGLSCLQQKLLSNLLK--HK-N--V---MPFIDLIFRRLS--RMKVLIVFDDVTCLS-Q----LQSLIGSLYW-LT--P 290 (770)
Q Consensus 229 ~~~~~~l~~~ll~~~~~--~~-~--~---~~~~~~l~~~L~--~kr~LlVLDdv~~~~-~----~~~l~~~~~~-~~--~ 290 (770)
. ....+...+..++.. .. . . .+....+.+.+. +++++||||+++... . +..+...... .. .
T Consensus 86 ~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~ 164 (365)
T TIGR02928 86 D-TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNA 164 (365)
T ss_pred C-CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCC
Confidence 1 445566677776631 11 1 1 133455555553 567899999998762 1 2222221001 11 2
Q ss_pred CceEEEEcCchhhhhhcC-------cceEEEeCccChHHHHHHHH
Q 041067 291 VSRIIITTRNKQVLRNWG-------VRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 291 gs~IivTTR~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~ 328 (770)
...+|.+|...+....+. ....+.+++.+.+|..+++.
T Consensus 165 ~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~ 209 (365)
T TIGR02928 165 KVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILE 209 (365)
T ss_pred eEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHH
Confidence 234555555443322111 12468899999999888886
No 36
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.89 E-value=1.7e-07 Score=105.35 Aligned_cols=279 Identities=14% Similarity=0.181 Sum_probs=167.9
Q ss_pred cCCCCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHH
Q 041067 156 RPRDNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCL 235 (770)
Q Consensus 156 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 235 (770)
.+|....+.|-|..-++.+.. ..+.|.+.|..++|-|||||+-+... ....-..+.|+.--.+ ..+...+
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~----dndp~rF 82 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDES----DNDPARF 82 (894)
T ss_pred CCCCCcccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCc----cCCHHHH
Confidence 456667888989887776663 34689999999999999999999988 4455567888872222 2255666
Q ss_pred HHHHHHHHhcCCCCc-----------------chHHHHHHHHC--CCcEEEEEeCCCChHh--HH-HHHhcccCCCCCce
Q 041067 236 QQKLLSNLLKHKNVM-----------------PFIDLIFRRLS--RMKVLIVFDDVTCLSQ--LQ-SLIGSLYWLTPVSR 293 (770)
Q Consensus 236 ~~~ll~~~~~~~~~~-----------------~~~~~l~~~L~--~kr~LlVLDdv~~~~~--~~-~l~~~~~~~~~gs~ 293 (770)
...++..+....+.. .....+...+. .++..+||||..-..+ +. .+.-.+....++-.
T Consensus 83 ~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~ 162 (894)
T COG2909 83 LSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLT 162 (894)
T ss_pred HHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeE
Confidence 677766664321111 12233333333 4678999999754321 22 22222233467889
Q ss_pred EEEEcCchhhhhhc---CcceEEEeC----ccChHHHHHHHH---------------HhccCCCchhHHHHhhHhcCC-C
Q 041067 294 IIITTRNKQVLRNW---GVRKIYEMK----ALEYHHAIELFI---------------MKYAQGVPLALKVLGCFLYER-E 350 (770)
Q Consensus 294 IivTTR~~~v~~~~---~~~~~~~l~----~L~~~ea~~Lf~---------------~~~~~glPLal~~~g~~L~~~-~ 350 (770)
.|||||..--.... -.+...++. .|+.+|+-++|. .+..+|-+-|+..++=.+++. +
T Consensus 163 lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~ 242 (894)
T COG2909 163 LVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALRNNTS 242 (894)
T ss_pred EEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCc
Confidence 99999987322111 012233333 388999999986 556666666666666555522 2
Q ss_pred HHHHHHHHHHHHhccchhHHH-HHHHhHhcCCHHHHHHHhhcccccCCCChhHHHHHHHhcCCCchhhHHHhhhccceeE
Q 041067 351 KEVWESAIDKLQRILLASIFE-VLKISYDSLDDKEKNIFLDVACFFQGEDVDPVMKFFNASGFYPEIGMSVLVDKSLIAI 429 (770)
Q Consensus 351 ~~~w~~~l~~l~~~~~~~i~~-~l~~sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~~~~L~~~sLi~~ 429 (770)
.+.-...+... .+.|.+ ...--+|.||++.|..++-+|++.. ++ +.|..-+.+.+ ....-+++|.+++|+-.
T Consensus 243 ~~q~~~~LsG~----~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~-~eL~~~Ltg~~-ng~amLe~L~~~gLFl~ 315 (894)
T COG2909 243 AEQSLRGLSGA----ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FN-DELCNALTGEE-NGQAMLEELERRGLFLQ 315 (894)
T ss_pred HHHHhhhccch----HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hh-HHHHHHHhcCC-cHHHHHHHHHhCCCcee
Confidence 22211111100 111111 1223478999999999999998843 22 22333332221 22334889999998763
Q ss_pred --e-cCCeEEecHHHHHHHHHHHhh
Q 041067 430 --D-SYNKITMHDLLQELGKEIVRQ 451 (770)
Q Consensus 430 --~-~~~~~~mHdl~~~~~~~i~~~ 451 (770)
+ +.+.|+.|.+..+|-+.-...
T Consensus 316 ~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 316 RLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred eecCCCceeehhHHHHHHHHhhhcc
Confidence 3 256799999999997765544
No 37
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.86 E-value=1.8e-07 Score=97.11 Aligned_cols=155 Identities=16% Similarity=0.162 Sum_probs=91.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCc---chHHHHHHH--
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVM---PFIDLIFRR-- 259 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~---~~~~~l~~~-- 259 (770)
...+.|+|.+|+||||+++.+++.....=-..+|+.+ ... +...+...+...+....... .....+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~-----~~~-~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVN-----TRV-DAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeC-----CCC-CHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999886532112223321 112 44556666665553322211 222333332
Q ss_pred ---HCCCcEEEEEeCCCChH--hHHHHHhccc---CCCCCceEEEEcCchhhhhhc----------CcceEEEeCccChH
Q 041067 260 ---LSRMKVLIVFDDVTCLS--QLQSLIGSLY---WLTPVSRIIITTRNKQVLRNW----------GVRKIYEMKALEYH 321 (770)
Q Consensus 260 ---L~~kr~LlVLDdv~~~~--~~~~l~~~~~---~~~~gs~IivTTR~~~v~~~~----------~~~~~~~l~~L~~~ 321 (770)
..+++.++|+||++... .++.+..... .......|++|.... ..... .....+.+++++.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 25788999999998754 3454432211 112233455665433 21111 11346889999999
Q ss_pred HHHHHHH----------------------HhccCCCchhHHHHhhHh
Q 041067 322 HAIELFI----------------------MKYAQGVPLALKVLGCFL 346 (770)
Q Consensus 322 ea~~Lf~----------------------~~~~~glPLal~~~g~~L 346 (770)
|..+++. ++.++|.|..|..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9988875 667778888877777654
No 38
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.86 E-value=5.6e-09 Score=111.39 Aligned_cols=241 Identities=16% Similarity=0.209 Sum_probs=134.3
Q ss_pred CCCCCcccchHHHHHHHHhhcC---CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHH
Q 041067 159 DNKNKLVGVESKVEEIESILGV---ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCL 235 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 235 (770)
..-.+|+|+++.++.+..++.. .......+.|+|++|+||||+|+.+++.....+. +.. .... ....++.
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~-~~~~~l~-- 94 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPAL-EKPGDLA-- 94 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cccc-cChHHHH--
Confidence 3456799999999999888753 2233567889999999999999999998754321 111 1101 0010111
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH--hHHHHHhccc-------------------CCCCCceE
Q 041067 236 QQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS--QLQSLIGSLY-------------------WLTPVSRI 294 (770)
Q Consensus 236 ~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~-------------------~~~~gs~I 294 (770)
.++..+ ++.-+|++|+++... ..+.+...+. ...+.+-|
T Consensus 95 --~~l~~l------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li 154 (328)
T PRK00080 95 --AILTNL------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLI 154 (328)
T ss_pred --HHHHhc------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEE
Confidence 111111 123455666665322 1111111110 01234556
Q ss_pred EEEcCchhhhhhc--CcceEEEeCccChHHHHHHHH------------------HhccCCCchhHHHHhhHhcCCCHHHH
Q 041067 295 IITTRNKQVLRNW--GVRKIYEMKALEYHHAIELFI------------------MKYAQGVPLALKVLGCFLYEREKEVW 354 (770)
Q Consensus 295 ivTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~------------------~~~~~glPLal~~~g~~L~~~~~~~w 354 (770)
..|||...+.... .....+++++++.++..+++. ++.|+|.|-.+..+...+. .|
T Consensus 155 ~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~ 229 (328)
T PRK00080 155 GATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVR-----DF 229 (328)
T ss_pred eecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHH-----HH
Confidence 6677755443221 123578999999999999987 6677777743333332211 11
Q ss_pred HHHHH--HHHhccchhHHHHHHHhHhcCCHHHHHHHh-hcccccCC-CChhHHHHHHHhcCCCchhhHH-HhhhccceeE
Q 041067 355 ESAID--KLQRILLASIFEVLKISYDSLDDKEKNIFL-DVACFFQG-EDVDPVMKFFNASGFYPEIGMS-VLVDKSLIAI 429 (770)
Q Consensus 355 ~~~l~--~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~l~~~~~~~g~~~~~~~~-~L~~~sLi~~ 429 (770)
..... .+.........+.+...+..|++..+..+. .+..|..+ ...+.+...+.......+..++ .|++.+||..
T Consensus 230 a~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~ 309 (328)
T PRK00080 230 AQVKGDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQR 309 (328)
T ss_pred HHHcCCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCccc
Confidence 10000 000000122334456677889888888775 55666554 5667777776554444455566 8999999975
Q ss_pred ec
Q 041067 430 DS 431 (770)
Q Consensus 430 ~~ 431 (770)
..
T Consensus 310 ~~ 311 (328)
T PRK00080 310 TP 311 (328)
T ss_pred CC
Confidence 43
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.86 E-value=1.4e-10 Score=117.94 Aligned_cols=126 Identities=18% Similarity=0.181 Sum_probs=94.9
Q ss_pred CceeEEEEcCCCCCCCCC-CCC-cccccccccCCCCcccc-ccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeE
Q 041067 534 GEVKYLHWYGYPLKSLPS-NLS-AEKLMLLEVPDSDIEQL-WDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVL 610 (770)
Q Consensus 534 ~~Lr~L~l~~~~l~~lp~-~~~-~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~ 610 (770)
..-..+.+..|.+++||+ .|. +.+|+.|+|++|+|+.+ |..++.+++|..|-+-+.+++ ..+|. ..+.+|..|+.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI-~~l~k-~~F~gL~slqr 144 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI-TDLPK-GAFGGLSSLQR 144 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch-hhhhh-hHhhhHHHHHH
Confidence 567788899999999996 454 69999999999999977 667899999999888887776 66664 46788888898
Q ss_pred EeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc---cCccEEeccCc
Q 041067 611 LNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS---GNISWLFLRET 662 (770)
Q Consensus 611 L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~---~~L~~L~l~~~ 662 (770)
|.+.-|...-.....+..|++|..|.+..|. ++.++.... ..++++.+..|
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcC
Confidence 8888777444444566778889888888865 566665332 55666655443
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.86 E-value=2.6e-09 Score=117.59 Aligned_cols=173 Identities=26% Similarity=0.345 Sum_probs=82.6
Q ss_pred cccccccccCCCCccccccccccCc-CCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCc
Q 041067 555 AEKLMLLEVPDSDIEQLWDCVKHYR-KLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLT 633 (770)
Q Consensus 555 ~~~L~~L~l~~~~i~~l~~~~~~l~-~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~ 633 (770)
...+..|++.++.+..++.....+. +|+.|+++++.. ..+| ..+.++++|+.|++++|. +..+|...+.++.|+
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i--~~l~--~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~ 189 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI--ESLP--SPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLN 189 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccch--hhhh--hhhhccccccccccCCch-hhhhhhhhhhhhhhh
Confidence 3456666666666666655555553 555555555332 1221 134455555555555554 444554444455555
Q ss_pred EEEecCCCCCCccCCccc--cCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCC
Q 041067 634 KLNLSGCSKLKRLPEISS--GNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSN 711 (770)
Q Consensus 634 ~L~L~~~~~l~~lp~~~~--~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 711 (770)
.|++++|. +..+|.... ..|++|.+++|.+...+..+..+.++..|.+.++. ...+|..++.+++|+.|++++|.
T Consensus 190 ~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~s~n~- 266 (394)
T COG4886 190 NLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDLSNNQ- 266 (394)
T ss_pred heeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccchhccccccceecccccc-
Confidence 55555543 444444322 33555555555444444444555555544444433 22223444444455555554432
Q ss_pred CcccCcccCCCCCCcEEEccCCCCc
Q 041067 712 LQRLPECLAQFSSPIILNLAKTNIE 736 (770)
Q Consensus 712 ~~~lp~~l~~l~~L~~L~L~~~~l~ 736 (770)
+..++. ++.+.+|+.|+++++.+.
T Consensus 267 i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 267 ISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccccc-ccccCccCEEeccCcccc
Confidence 222322 444455555555554444
No 41
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.83 E-value=5.2e-08 Score=115.34 Aligned_cols=288 Identities=17% Similarity=0.240 Sum_probs=170.5
Q ss_pred CcccchHHHHHHHHhhcCC-CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceE---E------------EEecchhh
Q 041067 163 KLVGVESKVEEIESILGVE-SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSC---F------------LENVREES 226 (770)
Q Consensus 163 ~~vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~---~------------~~~~~~~~ 226 (770)
.++||+.+++.|...+..- ...-.++.+.|..|||||+++++|...+.+.+...+ | +..+++..
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 3789999999999888643 234669999999999999999999998765522111 1 10000000
Q ss_pred c-----cCCCHHHHHHHHHHHHhcC-----------------CCC------c--------chHHHHHHHHC-CCcEEEEE
Q 041067 227 Q-----RSGGLSCLQQKLLSNLLKH-----------------KNV------M--------PFIDLIFRRLS-RMKVLIVF 269 (770)
Q Consensus 227 ~-----~~~~~~~l~~~ll~~~~~~-----------------~~~------~--------~~~~~l~~~L~-~kr~LlVL 269 (770)
. ..........+++..+... .+. . .....+..... .|+.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 0 0000111111122111110 000 0 01122233333 46899999
Q ss_pred eCCCChHh-----HHHHHhcccC-CCCCceEE--EEcCch--hhhhhcCcceEEEeCccChHHHHHHHH-----------
Q 041067 270 DDVTCLSQ-----LQSLIGSLYW-LTPVSRII--ITTRNK--QVLRNWGVRKIYEMKALEYHHAIELFI----------- 328 (770)
Q Consensus 270 Ddv~~~~~-----~~~l~~~~~~-~~~gs~Ii--vTTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~----------- 328 (770)
||+...+. ++.++....- .-.-..|. .|.+.. .+.........+.+.+|+..+...+..
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~~~ 240 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLLPA 240 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccccc
Confidence 99954332 3333333210 00011222 222222 122223345789999999999999986
Q ss_pred ------HhccCCCchhHHHHhhHhcCC-------CHHHHHHHHHHHHhcc-chhHHHHHHHhHhcCCHHHHHHHhhcccc
Q 041067 329 ------MKYAQGVPLALKVLGCFLYER-------EKEVWESAIDKLQRIL-LASIFEVLKISYDSLDDKEKNIFLDVACF 394 (770)
Q Consensus 329 ------~~~~~glPLal~~~g~~L~~~-------~~~~w~~~l~~l~~~~-~~~i~~~l~~sy~~L~~~~k~~fl~~a~f 394 (770)
+++..|.|+.+..+-..+... +...|..-...+...+ .+.+.+.+..-.+.||...|+.+...||+
T Consensus 241 p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA~i 320 (849)
T COG3899 241 PLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAAACI 320 (849)
T ss_pred hHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 889999999999988888653 3455655444443332 23356678889999999999999999999
Q ss_pred cCCCChhHHHHHHHhcCCCchhhHHHhhhccceeEec--------CC---eEEecHHHHHHHHHHHh
Q 041067 395 FQGEDVDPVMKFFNASGFYPEIGMSVLVDKSLIAIDS--------YN---KITMHDLLQELGKEIVR 450 (770)
Q Consensus 395 ~~~~~~~~l~~~~~~~g~~~~~~~~~L~~~sLi~~~~--------~~---~~~mHdl~~~~~~~i~~ 450 (770)
...++.+.|..++..........+......++|.+.. .. +-..||++|+.+-....
T Consensus 321 G~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~ 387 (849)
T COG3899 321 GNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIP 387 (849)
T ss_pred CccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCc
Confidence 9999999888888754444444444445555555421 11 22568888887655443
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.79 E-value=3.7e-09 Score=116.46 Aligned_cols=178 Identities=30% Similarity=0.387 Sum_probs=136.3
Q ss_pred CceeEEEEcCCCCCCCCCCCCcc--cccccccCCCCccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEE
Q 041067 534 GEVKYLHWYGYPLKSLPSNLSAE--KLMLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLL 611 (770)
Q Consensus 534 ~~Lr~L~l~~~~l~~lp~~~~~~--~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L 611 (770)
..+..|.+.++++..+|+..... +|+.|++++|.+..++..+..+++|+.|++++|.. ..+|. ....++.|+.|
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l--~~l~~--~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL--SDLPK--LLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh--hhhhh--hhhhhhhhhhe
Confidence 47888889999999998877753 89999999999998888888899999999988653 34443 12267888889
Q ss_pred eccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc-cCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCC
Q 041067 612 NLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS-GNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKS 690 (770)
Q Consensus 612 ~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~ 690 (770)
++++|. +..+|..+..+..|++|.+++|........... .++..|.+.++.+..+|..++.++++++|++++|. ...
T Consensus 192 ~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~-i~~ 269 (394)
T COG4886 192 DLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ-ISS 269 (394)
T ss_pred eccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccc-ccc
Confidence 999887 778887766666799999988763333332322 67777888888888888888888899999998877 445
Q ss_pred CCcccCCCCCCcEEEeecCCCCcccCcc
Q 041067 691 LPRSLWMLKSLGVLNLSGCSNLQRLPEC 718 (770)
Q Consensus 691 lp~~l~~l~~L~~L~l~~~~~~~~lp~~ 718 (770)
++. ++.+.+|+.|+++++......|..
T Consensus 270 i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 270 ISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccc-ccccCccCEEeccCccccccchhh
Confidence 554 888889999999887766655544
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.79 E-value=8.9e-10 Score=108.06 Aligned_cols=129 Identities=26% Similarity=0.308 Sum_probs=68.9
Q ss_pred CCCCcEEEecCCCCCCccCCccc--cCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEe
Q 041067 629 LEFLTKLNLSGCSKLKRLPEISS--GNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNL 706 (770)
Q Consensus 629 l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l 706 (770)
++.|++||||+|. ++.+.++.. +.++.|+++.|++..+.. +..+++|+.|+|++|. +..+-.+-..+.+.++|.+
T Consensus 283 Wq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred Hhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeeh
Confidence 4445555555544 344443333 455555666566555543 5566666666666654 2233223334555566666
Q ss_pred ecCCCCcccCcccCCCCCCcEEEccCCCCcccc--hhhhCCCCCcEEecccCccCCcCC
Q 041067 707 SGCSNLQRLPECLAQFSSPIILNLAKTNIERIP--KSISQLLMLRYLLLSYSESLQSSP 763 (770)
Q Consensus 707 ~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~l~~c~~L~~lP 763 (770)
++|. ++.+ +.++.+-+|..|++++|++..+- ..|+++|.|+.+.+.+|| +..+|
T Consensus 360 a~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 360 AQNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred hhhh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence 6532 2222 23555566666666666666332 246666777777777666 44444
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.75 E-value=1.8e-08 Score=116.38 Aligned_cols=113 Identities=28% Similarity=0.333 Sum_probs=96.6
Q ss_pred ccEEeccCcCcc-ccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccC
Q 041067 654 ISWLFLRETAIE-ELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAK 732 (770)
Q Consensus 654 L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~ 732 (770)
++.|+|+++.+. .+|..+..+++|+.|+|++|...+.+|..++.+++|+.|+|++|...+.+|+.++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 566777777776 7888899999999999999988889998899999999999999988889999999999999999999
Q ss_pred CCCc-ccchhhhCC-CCCcEEecccCccCCcCCCCC
Q 041067 733 TNIE-RIPKSISQL-LMLRYLLLSYSESLQSSPKPP 766 (770)
Q Consensus 733 ~~l~-~lp~~l~~l-~~L~~L~l~~c~~L~~lP~lp 766 (770)
|+++ .+|..+..+ .++..+++.+|+.+...|.++
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~ 535 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLR 535 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCC
Confidence 9988 888887653 467788999998887777654
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.6e-09 Score=110.39 Aligned_cols=199 Identities=12% Similarity=0.053 Sum_probs=123.6
Q ss_pred CceeEEEEcCCCCCCCCC--CC-CcccccccccCCCCcc---ccccccccCcCCcEEccCcCcCccccCCCCC-CCCCcc
Q 041067 534 GEVKYLHWYGYPLKSLPS--NL-SAEKLMLLEVPDSDIE---QLWDCVKHYRKLNQIIPAACNKLIAKTPNPM-LMPRLN 606 (770)
Q Consensus 534 ~~Lr~L~l~~~~l~~lp~--~~-~~~~L~~L~l~~~~i~---~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~-~~~~L~ 606 (770)
++||...+.+++....+. .. .+.+++.|+|+.|-+. .+.+....||+|+.|+|+.+... .|.-+ .-..++
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~---~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS---NFISSNTTLLLS 197 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc---CCccccchhhhh
Confidence 345555555555555442 11 2456677777776443 34455678888888888875422 22111 122467
Q ss_pred ceeEEeccCCCCCc-ccCccCCCCCCCcEEEecCCCCCC--ccCCccccCccEEeccCcCccccC--cccccCCCCCEEe
Q 041067 607 KLVLLNLRGSKSLK-RLPSRIFNLEFLTKLNLSGCSKLK--RLPEISSGNISWLFLRETAIEELP--SSIERLHRLGYLD 681 (770)
Q Consensus 607 ~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~L~~~~~l~--~lp~~~~~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~ 681 (770)
+|+.|.|+.|.... .+-...-.+|+|+.|++.+|..+. ..+.-....|+.|+|++|.+..++ .-++.++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 88888888888432 122223357888888888885222 222222267888889888888777 4578888888888
Q ss_pred ccCCCCCC-CCCcc-----cCCCCCCcEEEeecCCCCcccCc--ccCCCCCCcEEEccCCCCc
Q 041067 682 LLDCKRLK-SLPRS-----LWMLKSLGVLNLSGCSNLQRLPE--CLAQFSSPIILNLAKTNIE 736 (770)
Q Consensus 682 L~~~~~~~-~lp~~-----l~~l~~L~~L~l~~~~~~~~lp~--~l~~l~~L~~L~L~~~~l~ 736 (770)
++.|.... ..|+. ...+++|+.|++..|+. .+++. .+..+++|+.|.+..|.++
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I-~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI-RDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCcc-ccccccchhhccchhhhhhccccccc
Confidence 88887532 23333 35678888888888654 23332 4566777777777777765
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.8e-09 Score=110.10 Aligned_cols=202 Identities=20% Similarity=0.180 Sum_probs=133.5
Q ss_pred CcccccccccCCCCcccccc--ccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCcc-CCCCC
Q 041067 554 SAEKLMLLEVPDSDIEQLWD--CVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSR-IFNLE 630 (770)
Q Consensus 554 ~~~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~l~ 630 (770)
+.++|+...|.++.+...+. ..+.+++++.|+|+++-.. .-.|...-+..|++|+.|+|+.|.......+. -..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 35788899999998887764 6788999999999874211 11122223556788999999988743222211 12578
Q ss_pred CCcEEEecCCCCCC-ccCCccc--cCccEEeccCcC-ccccCcccccCCCCCEEeccCCCCCCCCC--cccCCCCCCcEE
Q 041067 631 FLTKLNLSGCSKLK-RLPEISS--GNISWLFLRETA-IEELPSSIERLHRLGYLDLLDCKRLKSLP--RSLWMLKSLGVL 704 (770)
Q Consensus 631 ~L~~L~L~~~~~l~-~lp~~~~--~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~L~~~~~~~~lp--~~l~~l~~L~~L 704 (770)
+|+.|.|+.|.... .+..... ++|+.|++..|. +..--.+..-++.|+.|+|++|.... .+ .-.+.++.|..|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhh
Confidence 89999999987431 1111111 578888988884 32222234456788999999887543 33 346788889999
Q ss_pred EeecCCCCc-ccCcc-----cCCCCCCcEEEccCCCCcccch--hhhCCCCCcEEecccCc
Q 041067 705 NLSGCSNLQ-RLPEC-----LAQFSSPIILNLAKTNIERIPK--SISQLLMLRYLLLSYSE 757 (770)
Q Consensus 705 ~l~~~~~~~-~lp~~-----l~~l~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~l~~c~ 757 (770)
+++.|.... ..|+. ...+++|++|++..|++..+++ .+..+++|+.|.+..|+
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 888865432 23333 4568889999999999876664 35666777777776665
No 47
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.68 E-value=2.4e-08 Score=94.53 Aligned_cols=128 Identities=23% Similarity=0.243 Sum_probs=35.6
Q ss_pred CCCccceeEEeccCCCCCcccCccCC-CCCCCcEEEecCCCCCCccCCccc-cCccEEeccCcCccccCccc-ccCCCCC
Q 041067 602 MPRLNKLVLLNLRGSKSLKRLPSRIF-NLEFLTKLNLSGCSKLKRLPEISS-GNISWLFLRETAIEELPSSI-ERLHRLG 678 (770)
Q Consensus 602 ~~~L~~L~~L~L~~~~~l~~lp~~i~-~l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L~l~~~~i~~lp~~i-~~l~~L~ 678 (770)
..+..++++|+|++|. +..+. .++ .+.+|+.|++++|. ++.++.... .+|++|++++|.++.++..+ ..+++|+
T Consensus 15 ~~n~~~~~~L~L~~n~-I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQ-ISTIE-NLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred cccccccccccccccc-ccccc-chhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 4455566777777766 33333 243 45666777776654 333333222 34444444444444443333 2344455
Q ss_pred EEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCcccch----hhhCCCCCcEEecc
Q 041067 679 YLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIERIPK----SISQLLMLRYLLLS 754 (770)
Q Consensus 679 ~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp~----~l~~l~~L~~L~l~ 754 (770)
.|++++|... .+ +. -..+..+++|+.|++.+|+++..+. .+..+|+|+.||-.
T Consensus 92 ~L~L~~N~I~-~l---------------------~~-l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 92 ELYLSNNKIS-DL---------------------NE-LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EEE-TTS----SC---------------------CC-CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EEECcCCcCC-Ch---------------------HH-hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 5554444321 00 11 1234556667777777777664332 35667777777654
Q ss_pred c
Q 041067 755 Y 755 (770)
Q Consensus 755 ~ 755 (770)
.
T Consensus 149 ~ 149 (175)
T PF14580_consen 149 D 149 (175)
T ss_dssp E
T ss_pred E
Confidence 3
No 48
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.68 E-value=3.8e-09 Score=103.69 Aligned_cols=134 Identities=19% Similarity=0.209 Sum_probs=86.5
Q ss_pred CCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc-cCccEEeccCcCccccCcccccCCCCCEE
Q 041067 602 MPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS-GNISWLFLRETAIEELPSSIERLHRLGYL 680 (770)
Q Consensus 602 ~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L~l~~~~i~~lp~~i~~l~~L~~L 680 (770)
+.....|+.|||++|. +..+..++.-++.++.|++|+|. +..+..... .+|+.|||++|.+.++-.+-.++-++++|
T Consensus 280 ~dTWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~-i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNR-IRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccc-hhhhhhhhhhccceeEEeccccc-eeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 3344556667777665 55555555556667777777765 222222222 56777777777777776666777778888
Q ss_pred eccCCCCCCCCCcccCCCCCCcEEEeecCCCCccc--CcccCCCCCCcEEEccCCCCcccch
Q 041067 681 DLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRL--PECLAQFSSPIILNLAKTNIERIPK 740 (770)
Q Consensus 681 ~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~l--p~~l~~l~~L~~L~L~~~~l~~lp~ 740 (770)
.|++|. +.++ ++++.+-+|..|++++|+. +.+ ...++++|.|+.|.|.+|++..+|+
T Consensus 358 ~La~N~-iE~L-SGL~KLYSLvnLDl~~N~I-e~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 358 KLAQNK-IETL-SGLRKLYSLVNLDLSSNQI-EELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred ehhhhh-Hhhh-hhhHhhhhheeccccccch-hhHHHhcccccccHHHHHhhcCCCccccch
Confidence 888765 3333 3577777888888887553 333 2357888888888888888775554
No 49
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.62 E-value=2.6e-07 Score=95.46 Aligned_cols=145 Identities=23% Similarity=0.352 Sum_probs=95.0
Q ss_pred CCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHH
Q 041067 162 NKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLS 241 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 241 (770)
.+++|-+..+.++. +++.+...-.||++|+||||||+.++......|...- .. ..++..+.+.+ .
T Consensus 30 ~HLlg~~~~lrr~v-----~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~s------Av---~~gvkdlr~i~-e 94 (436)
T COG2256 30 EHLLGEGKPLRRAV-----EAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALS------AV---TSGVKDLREII-E 94 (436)
T ss_pred HhhhCCCchHHHHH-----hcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEec------cc---cccHHHHHHHH-H
Confidence 34555544444443 3445677889999999999999999998766654321 11 11444443322 1
Q ss_pred HHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCC--hHhHHHHHhcccCCCCCceEEE--EcCchhhhh---hcCcceEEE
Q 041067 242 NLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTC--LSQLQSLIGSLYWLTPVSRIII--TTRNKQVLR---NWGVRKIYE 314 (770)
Q Consensus 242 ~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~Iiv--TTR~~~v~~---~~~~~~~~~ 314 (770)
+ .-+....+++.+|++|.|.. ..|-+.+++.. ..|.-|+| ||-|+...- ......+++
T Consensus 95 ~------------a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~ 159 (436)
T COG2256 95 E------------ARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFE 159 (436)
T ss_pred H------------HHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheee
Confidence 1 11223458999999999964 44667777775 56777776 777775421 123457999
Q ss_pred eCccChHHHHHHHH---HhccCCCc
Q 041067 315 MKALEYHHAIELFI---MKYAQGVP 336 (770)
Q Consensus 315 l~~L~~~ea~~Lf~---~~~~~glP 336 (770)
+++|+.++-.+++. .....|++
T Consensus 160 lk~L~~~di~~~l~ra~~~~~rgl~ 184 (436)
T COG2256 160 LKPLSSEDIKKLLKRALLDEERGLG 184 (436)
T ss_pred eecCCHHHHHHHHHHHHhhhhcCCC
Confidence 99999999999987 55666666
No 50
>PRK06893 DNA replication initiation factor; Validated
Probab=98.61 E-value=6.6e-07 Score=90.04 Aligned_cols=132 Identities=14% Similarity=0.261 Sum_probs=80.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCc
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMK 264 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr 264 (770)
.+.+.|||.+|+|||+||+++++....+...+.|+.. ... .....++ .+.++ +.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~-~~~-------~~~~~~~-----------------~~~~~-~~ 92 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL-SKS-------QYFSPAV-----------------LENLE-QQ 92 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH-HHh-------hhhhHHH-----------------Hhhcc-cC
Confidence 4568999999999999999999997666566677751 110 0000111 11121 22
Q ss_pred EEEEEeCCCCh---HhHHH-HHhcccC-CCCCceEEEEcCc----------hhhhhhcCcceEEEeCccChHHHHHHHH-
Q 041067 265 VLIVFDDVTCL---SQLQS-LIGSLYW-LTPVSRIIITTRN----------KQVLRNWGVRKIYEMKALEYHHAIELFI- 328 (770)
Q Consensus 265 ~LlVLDdv~~~---~~~~~-l~~~~~~-~~~gs~IivTTR~----------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~- 328 (770)
-+||+||++.. .+|+. +...+.. ...|+.+||+|.+ +++...++....++++++++++.++++.
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 48999999863 34542 3332222 1245666554443 3455555556789999999999999997
Q ss_pred HhccCCCchhHHHH
Q 041067 329 MKYAQGVPLALKVL 342 (770)
Q Consensus 329 ~~~~~glPLal~~~ 342 (770)
.-...|+++.=.++
T Consensus 173 ~a~~~~l~l~~~v~ 186 (229)
T PRK06893 173 NAYQRGIELSDEVA 186 (229)
T ss_pred HHHHcCCCCCHHHH
Confidence 22234565554443
No 51
>PF13173 AAA_14: AAA domain
Probab=98.60 E-value=5.1e-07 Score=82.02 Aligned_cols=119 Identities=17% Similarity=0.220 Sum_probs=80.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcE
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKV 265 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~ 265 (770)
+++.|.|+.|+||||++++++.+.. .-...+|+. ..+. ....... . +..+.+.+....++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~-------~~~~~~~-~---------~~~~~~~~~~~~~~~ 63 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDP-------RDRRLAD-P---------DLLEYFLELIKPGKK 63 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCH-------HHHHHhh-h---------hhHHHHHHhhccCCc
Confidence 5799999999999999999998765 334455554 1111 1100000 0 012333333334778
Q ss_pred EEEEeCCCChHhHHHHHhcccCCCCCceEEEEcCchhhhhh------cCcceEEEeCccChHHH
Q 041067 266 LIVFDDVTCLSQLQSLIGSLYWLTPVSRIIITTRNKQVLRN------WGVRKIYEMKALEYHHA 323 (770)
Q Consensus 266 LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~------~~~~~~~~l~~L~~~ea 323 (770)
+++||++....+|......+....+..+|++|+........ .|....+++.+|+..|-
T Consensus 64 ~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 64 YIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred EEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 99999999999998888877666677899999998766633 23345789999998773
No 52
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=3.5e-08 Score=93.46 Aligned_cols=131 Identities=21% Similarity=0.242 Sum_probs=34.9
Q ss_pred CCCCCCcccccccccCCCCccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccC-C
Q 041067 549 LPSNLSAEKLMLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRI-F 627 (770)
Q Consensus 549 lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i-~ 627 (770)
.|...++.++++|+|.++.|..+..--..+.+|+.|++++|.. -.+.+++.+++|++|++++|. +..++..+ .
T Consensus 12 ~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I-----~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~ 85 (175)
T PF14580_consen 12 IAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQI-----TKLEGLPGLPRLKTLDLSNNR-ISSISEGLDK 85 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS-------S--TT----TT--EEE--SS----S-CHHHHH
T ss_pred ccccccccccccccccccccccccchhhhhcCCCEEECCCCCC-----ccccCccChhhhhhcccCCCC-CCccccchHH
Confidence 3333344455666666666655432112345555555555321 122234445555555555554 33333222 1
Q ss_pred CCCCCcEEEecCCCCCCccCCccccCccEEeccCcCccccC--cccccCCCCCEEeccCCCCCCCCCc----ccCCCCCC
Q 041067 628 NLEFLTKLNLSGCSKLKRLPEISSGNISWLFLRETAIEELP--SSIERLHRLGYLDLLDCKRLKSLPR----SLWMLKSL 701 (770)
Q Consensus 628 ~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~L~~~~~~~~lp~----~l~~l~~L 701 (770)
.+++|++|++++ |.|..+. ..+..+++|+.|++.+|+.... +. .+..+|+|
T Consensus 86 ~lp~L~~L~L~~----------------------N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~L 142 (175)
T PF14580_consen 86 NLPNLQELYLSN----------------------NKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSL 142 (175)
T ss_dssp H-TT--EEE-TT----------------------S---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-
T ss_pred hCCcCCEEECcC----------------------CcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChh
Confidence 345555555555 4444332 2355677777777777764322 21 34567777
Q ss_pred cEEEeec
Q 041067 702 GVLNLSG 708 (770)
Q Consensus 702 ~~L~l~~ 708 (770)
+.||-..
T Consensus 143 k~LD~~~ 149 (175)
T PF14580_consen 143 KVLDGQD 149 (175)
T ss_dssp SEETTEE
T ss_pred heeCCEE
Confidence 7777544
No 53
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.58 E-value=8.8e-08 Score=99.64 Aligned_cols=256 Identities=21% Similarity=0.276 Sum_probs=169.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCC-CCcchHHHHHHHHCC
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHK-NVMPFIDLIFRRLSR 262 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~-~~~~~~~~l~~~L~~ 262 (770)
..+.+.++|.|||||||++-.+.. +...|....|+.+....+++. .+.-.+...+.-.. +.......+..+..+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~----~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~ 87 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPA----LVFPTLAGALGLHVQPGDSAVDTLVRRIGD 87 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchh----HhHHHHHhhcccccccchHHHHHHHHHHhh
Confidence 467899999999999999999999 888899888887666665433 12122222121111 112345567777889
Q ss_pred CcEEEEEeCCCChH-hHHHHHhcccCCCCCceEEEEcCchhhhhhcCcceEEEeCccChH-HHHHHHH------------
Q 041067 263 MKVLIVFDDVTCLS-QLQSLIGSLYWLTPVSRIIITTRNKQVLRNWGVRKIYEMKALEYH-HAIELFI------------ 328 (770)
Q Consensus 263 kr~LlVLDdv~~~~-~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~------------ 328 (770)
+|.++|+||..+.. +-..+...+....+.-.|+.|+|+.-.. ..+..+.++.|+.. ++.++|.
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 99999999987654 3444444555556666888999976332 33567888888776 7888986
Q ss_pred -----------HhccCCCchhHHHHhhHhcCCCHHHHHHHHHH----HHhc------cchhHHHHHHHhHhcCCHHHHHH
Q 041067 329 -----------MKYAQGVPLALKVLGCFLYEREKEVWESAIDK----LQRI------LLASIFEVLKISYDSLDDKEKNI 387 (770)
Q Consensus 329 -----------~~~~~glPLal~~~g~~L~~~~~~~w~~~l~~----l~~~------~~~~i~~~l~~sy~~L~~~~k~~ 387 (770)
.....|.|++|...++..+.-...+--..++. +..- ........+..||.-|..-++..
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~ 244 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERAL 244 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHH
Confidence 77788999999999998887654443333322 2111 14456778999999999999999
Q ss_pred HhhcccccCCCChhHHHHHHHhcCCCc-------hhhHHHhhhccceeEec---CCeEEecHHHHHHHHHHH
Q 041067 388 FLDVACFFQGEDVDPVMKFFNASGFYP-------EIGMSVLVDKSLIAIDS---YNKITMHDLLQELGKEIV 449 (770)
Q Consensus 388 fl~~a~f~~~~~~~~l~~~~~~~g~~~-------~~~~~~L~~~sLi~~~~---~~~~~mHdl~~~~~~~i~ 449 (770)
|..++.|...+..+. ..+.+.|-.. ...+..+++++++...+ .-.++.-+-.+.|+....
T Consensus 245 ~~rLa~~~g~f~~~l--~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL 314 (414)
T COG3903 245 FGRLAVFVGGFDLGL--ALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAEL 314 (414)
T ss_pred hcchhhhhhhhcccH--HHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999988887762 2333333221 23367788888877543 122444444445544443
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.56 E-value=1.9e-07 Score=98.93 Aligned_cols=159 Identities=26% Similarity=0.375 Sum_probs=103.8
Q ss_pred cccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccccCc
Q 041067 575 VKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISSGNI 654 (770)
Q Consensus 575 ~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~~L 654 (770)
+..+++++.|++++| .+ ..+|. ++ .+|+.|.+++|..+..+|..+ .++|++|++++|+.+..+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c-~L-~sLP~---LP--~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~----sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDC-DI-ESLPV---LP--NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE----SV 114 (426)
T ss_pred HHHhcCCCEEEeCCC-CC-cccCC---CC--CCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc----cc
Confidence 445688999999998 45 56663 22 369999999999998888755 36899999999988888876 58
Q ss_pred cEEeccCcCc---cccCcccccCCCCCEEeccCCCCC--CCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEE
Q 041067 655 SWLFLRETAI---EELPSSIERLHRLGYLDLLDCKRL--KSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILN 729 (770)
Q Consensus 655 ~~L~l~~~~i---~~lp~~i~~l~~L~~L~L~~~~~~--~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~ 729 (770)
+.|++.++.. ..+|+ +|+.|.+.++... ..+|.. -.++|++|++++|... .+|..+- .+|+.|.
T Consensus 115 e~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSIT 183 (426)
T ss_pred ceEEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEE
Confidence 8888877654 45554 4566776543311 112211 1268999999998755 3444332 5899999
Q ss_pred ccCCCCcccchhhhCC-CCCcEEecccCcc
Q 041067 730 LAKTNIERIPKSISQL-LMLRYLLLSYSES 758 (770)
Q Consensus 730 L~~~~l~~lp~~l~~l-~~L~~L~l~~c~~ 758 (770)
++.+....+.-....+ +++ .|++.+|-+
T Consensus 184 ls~n~~~sLeI~~~sLP~nl-~L~f~n~lk 212 (426)
T PRK15386 184 LHIEQKTTWNISFEGFPDGL-DIDLQNSVL 212 (426)
T ss_pred ecccccccccCccccccccc-Eechhhhcc
Confidence 9876433211111112 234 667776643
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.47 E-value=7.3e-07 Score=94.63 Aligned_cols=132 Identities=25% Similarity=0.330 Sum_probs=91.1
Q ss_pred cccccccccCCCCccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcE
Q 041067 555 AEKLMLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTK 634 (770)
Q Consensus 555 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 634 (770)
..++..|++++|.++.+|. -..+|+.|.+++|..+ ..+|. .++ .+|++|++++|..+..+|+ +|+.
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nL-tsLP~--~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNL-TTLPG--SIP--EGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCc-ccCCc--hhh--hhhhheEccCccccccccc------ccce
Confidence 3678899999999998882 2347999999999988 66665 232 5899999999977888876 3566
Q ss_pred EEecCC--CCCCccCCccccCccEEeccCcC-c--cccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecC
Q 041067 635 LNLSGC--SKLKRLPEISSGNISWLFLRETA-I--EELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGC 709 (770)
Q Consensus 635 L~L~~~--~~l~~lp~~~~~~L~~L~l~~~~-i--~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~ 709 (770)
|+++++ ..+..+|. +|+.|.+.++. . ..+|. .-.++|++|.+++|... .+|..+. .+|+.|.++.+
T Consensus 117 L~L~~n~~~~L~~LPs----sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 117 LEIKGSATDSIKNVPN----GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EEeCCCCCcccccCcc----hHhheecccccccccccccc--ccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 666543 33555665 67788775432 1 11221 12268999999998854 3554443 58999999765
No 56
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.45 E-value=1.8e-06 Score=80.18 Aligned_cols=123 Identities=21% Similarity=0.226 Sum_probs=71.2
Q ss_pred ccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHh
Q 041067 165 VGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLL 244 (770)
Q Consensus 165 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 244 (770)
+|++..+..+...+... ..+.+.|+|.+|+||||+|+++++.+...-...+++. ..+..... ... ... ...
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~~-~~~---~~~-~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEGL-VVA---ELF-GHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhhh-HHH---HHh-hhh-
Confidence 47888999998888543 3457899999999999999999998754333444443 22221111 000 000 000
Q ss_pred cCCCCcchHHHHHHHHCCCcEEEEEeCCCCh--Hh---HHHHHhcccCC---CCCceEEEEcCchh
Q 041067 245 KHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL--SQ---LQSLIGSLYWL---TPVSRIIITTRNKQ 302 (770)
Q Consensus 245 ~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~---~~~l~~~~~~~---~~gs~IivTTR~~~ 302 (770)
............++.++|+||++.. .. +..+....... ..+.+||+||....
T Consensus 72 ------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111222456789999999864 22 33333332221 36788988888654
No 57
>PTZ00202 tuzin; Provisional
Probab=98.45 E-value=5.2e-05 Score=80.22 Aligned_cols=161 Identities=14% Similarity=0.135 Sum_probs=101.6
Q ss_pred cCCCCCCCcccchHHHHHHHHhhcCCC-CCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHH
Q 041067 156 RPRDNKNKLVGVESKVEEIESILGVES-KDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSC 234 (770)
Q Consensus 156 ~~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 234 (770)
..|.+...|+||+.++.++...|...+ ...+++.|.|++|+|||||++.+..... ..+++.|.. +...
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr-------g~eE 324 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR-------GTED 324 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC-------CHHH
Confidence 456678899999999999999996433 3366999999999999999999997653 335555433 4467
Q ss_pred HHHHHHHHHhcCCCCc--chHHHHHHHH-----C-CCcEEEEEe--CCCChHh-HHHHHhcccCCCCCceEEEEcCchhh
Q 041067 235 LQQKLLSNLLKHKNVM--PFIDLIFRRL-----S-RMKVLIVFD--DVTCLSQ-LQSLIGSLYWLTPVSRIIITTRNKQV 303 (770)
Q Consensus 235 l~~~ll~~~~~~~~~~--~~~~~l~~~L-----~-~kr~LlVLD--dv~~~~~-~~~l~~~~~~~~~gs~IivTTR~~~v 303 (770)
+...++.++....... ++...|.+.+ . +++.+||+- +=.+..- ..+. ..+...-.-|+|++----+.+
T Consensus 325 lLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evplesl 403 (550)
T PTZ00202 325 TLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESL 403 (550)
T ss_pred HHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhc
Confidence 7788888887533222 4445554443 2 566777654 2222221 1111 112222345677765433322
Q ss_pred hhh---cCcceEEEeCccChHHHHHHHH
Q 041067 304 LRN---WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 304 ~~~---~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
-.. ...-..|-++.++.++|.++..
T Consensus 404 t~~~~~lprldf~~vp~fsr~qaf~y~~ 431 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQAFAYTQ 431 (550)
T ss_pred chhcccCccceeEecCCCCHHHHHHHHh
Confidence 111 1234689999999999988875
No 58
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.42 E-value=8.6e-06 Score=89.68 Aligned_cols=142 Identities=23% Similarity=0.371 Sum_probs=86.5
Q ss_pred CCCCcccchHHHHH---HHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHH
Q 041067 160 NKNKLVGVESKVEE---IESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQ 236 (770)
Q Consensus 160 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 236 (770)
.-+.+||.+..+.. +..++.. .....+.++|++|+||||+|+.+++.....|.. +.. .. . +...+
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a---~~--~-~~~~i- 77 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSA---VT--S-GVKDL- 77 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eec---cc--c-cHHHH-
Confidence 34568898887666 7777743 345678899999999999999999976544321 111 11 1 22221
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEE--EcCchhhh---hhcCc
Q 041067 237 QKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIII--TTRNKQVL---RNWGV 309 (770)
Q Consensus 237 ~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Iiv--TTR~~~v~---~~~~~ 309 (770)
++++.... .....+++.+|++|+++.. .+.+.++..+. .|..++| ||.+.... .....
T Consensus 78 r~ii~~~~------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR 142 (413)
T PRK13342 78 REVIEEAR------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSR 142 (413)
T ss_pred HHHHHHHH------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhcc
Confidence 11111111 0112457889999999864 35566666553 3554554 34443211 11222
Q ss_pred ceEEEeCccChHHHHHHHH
Q 041067 310 RKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 310 ~~~~~l~~L~~~ea~~Lf~ 328 (770)
...+.+.+++.++..+++.
T Consensus 143 ~~~~~~~~ls~e~i~~lL~ 161 (413)
T PRK13342 143 AQVFELKPLSEEDIEQLLK 161 (413)
T ss_pred ceeeEeCCCCHHHHHHHHH
Confidence 4689999999999999987
No 59
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=98.41 E-value=4.7e-08 Score=85.01 Aligned_cols=69 Identities=22% Similarity=0.390 Sum_probs=55.1
Q ss_pred hhhhhhhhcCCCCCCCcchHHHHHHHHhccceeEeecCCccCchhhHHHHHHHHHhhccCCcEEEeEEEEecCCcc
Q 041067 12 YKVAELIKRRGVHGGDEISKSLVNVIEASAISVIVFSEGYASSRSCLDELVKILECKKEYAQIVIPFFYRVDPSDV 87 (770)
Q Consensus 12 ~~~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~ivv~s~~y~~s~~cl~El~~i~~~~~~~~~~v~pvf~~v~p~~v 87 (770)
+++.+|+|. ++..|+.+.+++.+||++|++.|+++|++|..|.||..|+..+.+ .+..|+||. +++.++
T Consensus 23 ~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~----~~~~iipv~--~~~~~~ 91 (102)
T PF13676_consen 23 AGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK----RGKPIIPVR--LDPCEL 91 (102)
T ss_dssp TT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC----TSESEEEEE--CSGGGS
T ss_pred cCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH----CCCEEEEEE--ECCcCC
Confidence 455689987 999999999999999999999999999999999999999998843 445899997 545444
No 60
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.40 E-value=9.4e-06 Score=81.86 Aligned_cols=134 Identities=17% Similarity=0.265 Sum_probs=80.5
Q ss_pred chHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcC
Q 041067 167 VESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKH 246 (770)
Q Consensus 167 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~ 246 (770)
.+..++++.+++. ....+.|.|+|.+|+|||++|+.+++.........+|+. +.+... .. ..++
T Consensus 22 ~~~~~~~l~~~~~--~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~---~~----~~~~------ 85 (226)
T TIGR03420 22 NAELLAALRQLAA--GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQ---AD----PEVL------ 85 (226)
T ss_pred cHHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHH---hH----HHHH------
Confidence 4556777777754 233567999999999999999999988665544455554 222110 00 0111
Q ss_pred CCCcchHHHHHHHHCCCcEEEEEeCCCChH---hH-HHHHhcccC-CCCCceEEEEcCchh---------hhhhcCcceE
Q 041067 247 KNVMPFIDLIFRRLSRMKVLIVFDDVTCLS---QL-QSLIGSLYW-LTPVSRIIITTRNKQ---------VLRNWGVRKI 312 (770)
Q Consensus 247 ~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~~-~~l~~~~~~-~~~gs~IivTTR~~~---------v~~~~~~~~~ 312 (770)
+.+++ .-+||+||++... .| +.+...+.. ...+.++|+||+... +...+.....
T Consensus 86 -----------~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~ 153 (226)
T TIGR03420 86 -----------EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLV 153 (226)
T ss_pred -----------hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCee
Confidence 11222 2389999997643 22 333333221 123457888887432 1222222467
Q ss_pred EEeCccChHHHHHHHH
Q 041067 313 YEMKALEYHHAIELFI 328 (770)
Q Consensus 313 ~~l~~L~~~ea~~Lf~ 328 (770)
++++++++++...++.
T Consensus 154 i~l~~l~~~e~~~~l~ 169 (226)
T TIGR03420 154 FQLPPLSDEEKIAALQ 169 (226)
T ss_pred EecCCCCHHHHHHHHH
Confidence 9999999998888875
No 61
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.40 E-value=1.8e-05 Score=90.04 Aligned_cols=185 Identities=14% Similarity=0.146 Sum_probs=105.4
Q ss_pred CCCCCCCcccchHHHHHHHHhhcC---CCCCeEEEEEEecCCCcHHHHHHHHHHHHhC-----CCC--ceEEEEecchhh
Q 041067 157 PRDNKNKLVGVESKVEEIESILGV---ESKDVYSLGIWGIGGIGKTTIARAIFDKISG-----DFE--GSCFLENVREES 226 (770)
Q Consensus 157 ~~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-----~f~--~~~~~~~~~~~~ 226 (770)
+...++.+.|||+++++|...|.. ++....++-|+|++|.|||+.++.|.+++.. ..+ ..+++. .....
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-Cm~Ls 828 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-GMNVV 828 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-CCccC
Confidence 344567899999999999988853 2333356789999999999999999987632 222 123443 22221
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCc-----chHHHHHHHHC---CCcEEEEEeCCCChH--hHHHHHhcccCC-CCCceEE
Q 041067 227 QRSGGLSCLQQKLLSNLLKHKNVM-----PFIDLIFRRLS---RMKVLIVFDDVTCLS--QLQSLIGSLYWL-TPVSRII 295 (770)
Q Consensus 227 ~~~~~~~~l~~~ll~~~~~~~~~~-----~~~~~l~~~L~---~kr~LlVLDdv~~~~--~~~~l~~~~~~~-~~gs~Ii 295 (770)
....+...+..++....... +....+...+. +...+||||+|+... .-+.|...+.|. ..+++|+
T Consensus 829 ----tp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLi 904 (1164)
T PTZ00112 829 ----HPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLV 904 (1164)
T ss_pred ----CHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEE
Confidence 34455566666664333211 33344444442 123589999997643 212233333332 2456655
Q ss_pred E--EcCchhhh--------hhcCcceEEEeCccChHHHHHHHH--HhccCC--CchhHHHHhhHhc
Q 041067 296 I--TTRNKQVL--------RNWGVRKIYEMKALEYHHAIELFI--MKYAQG--VPLALKVLGCFLY 347 (770)
Q Consensus 296 v--TTR~~~v~--------~~~~~~~~~~l~~L~~~ea~~Lf~--~~~~~g--lPLal~~~g~~L~ 347 (770)
| +|.+.+.. ..++ ...+..++.+.++-.+++. ++.+.+ -+-||..+|...+
T Consensus 905 LIGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA 969 (1164)
T PTZ00112 905 LIAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA 969 (1164)
T ss_pred EEEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh
Confidence 4 34332221 1222 2235668899999888886 443332 3555666665443
No 62
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.36 E-value=4.6e-07 Score=88.21 Aligned_cols=50 Identities=30% Similarity=0.537 Sum_probs=35.7
Q ss_pred CcccchHHHHHHHHhhc-CCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 163 KLVGVESKVEEIESILG-VESKDVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 163 ~~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
.||||+++++++...+. ......+.+.|+|.+|+|||+|.++++.++..+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999994 334457899999999999999999999987766
No 63
>PLN03150 hypothetical protein; Provisional
Probab=98.36 E-value=7.8e-07 Score=102.89 Aligned_cols=105 Identities=22% Similarity=0.220 Sum_probs=62.4
Q ss_pred ceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc--cCccEEeccCcCcc-ccCcccccCCCCCEEecc
Q 041067 607 KLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS--GNISWLFLRETAIE-ELPSSIERLHRLGYLDLL 683 (770)
Q Consensus 607 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~ 683 (770)
.++.|+|++|.....+|..++.+++|+.|+|++|...+.+|.... .+|+.|+|++|.+. .+|.+++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 467788888887778888888888888888888765445554333 44555555555544 445555555555555555
Q ss_pred CCCCCCCCCcccCCC-CCCcEEEeecCCC
Q 041067 684 DCKRLKSLPRSLWML-KSLGVLNLSGCSN 711 (770)
Q Consensus 684 ~~~~~~~lp~~l~~l-~~L~~L~l~~~~~ 711 (770)
+|...+.+|..++.+ .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 555555555444432 2344455544433
No 64
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.34 E-value=4.5e-08 Score=98.77 Aligned_cols=106 Identities=24% Similarity=0.236 Sum_probs=75.7
Q ss_pred cCccEEeccCcCcc-----ccCcccccCCCCCEEeccCCCCCC----CCCcccCCCCCCcEEEeecCCCCcccC----cc
Q 041067 652 GNISWLFLRETAIE-----ELPSSIERLHRLGYLDLLDCKRLK----SLPRSLWMLKSLGVLNLSGCSNLQRLP----EC 718 (770)
Q Consensus 652 ~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~l~~~~~~~~lp----~~ 718 (770)
++|+.+.+..|.|. -+-..+.++++|+.|+|.+|.+.. .+...+..+++|+.|++++|.....-. ..
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 35666666655554 344567888999999999987643 244456777899999999987653322 11
Q ss_pred c-CCCCCCcEEEccCCCCc-----ccchhhhCCCCCcEEecccCc
Q 041067 719 L-AQFSSPIILNLAKTNIE-----RIPKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 719 l-~~l~~L~~L~L~~~~l~-----~lp~~l~~l~~L~~L~l~~c~ 757 (770)
+ ...++|+.|.+.+|.++ .+...+...+.|..|+|++|.
T Consensus 265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 1 34789999999999987 344456678899999999997
No 65
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.33 E-value=5.9e-06 Score=89.51 Aligned_cols=149 Identities=19% Similarity=0.313 Sum_probs=88.7
Q ss_pred CCCCcccchHHHHHHHHhhcCC-----------CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhcc
Q 041067 160 NKNKLVGVESKVEEIESILGVE-----------SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQR 228 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 228 (770)
...++.|+++.++++.+.+... -...+-+.++|++|+|||++|+++++.....|-.. .
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v---~-------- 188 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV---V-------- 188 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec---c--------
Confidence 3457899999999998877421 12245699999999999999999999876543211 0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcchHHHHHHH-HCCCcEEEEEeCCCChH----------------hHHHHHhcccCC--C
Q 041067 229 SGGLSCLQQKLLSNLLKHKNVMPFIDLIFRR-LSRMKVLIVFDDVTCLS----------------QLQSLIGSLYWL--T 289 (770)
Q Consensus 229 ~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~--~ 289 (770)
...+....... .......+.+. -...+.+|++|+++... .+..++..+..+ .
T Consensus 189 ---~~~l~~~~~g~------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 189 ---GSELVRKYIGE------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred ---hHHHHHHhhhH------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 01111111100 00111112122 13466899999987531 133333333222 2
Q ss_pred CCceEEEEcCchhhh-----hhcCcceEEEeCccChHHHHHHHH
Q 041067 290 PVSRIIITTRNKQVL-----RNWGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 290 ~gs~IivTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
.+.+||.||...+.. .....+..+.++..+.++..++|.
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~ 303 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILK 303 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHH
Confidence 466788888754332 112335689999999999999986
No 66
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.32 E-value=3.3e-06 Score=77.07 Aligned_cols=109 Identities=21% Similarity=0.259 Sum_probs=71.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCC-----CCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCC----cchHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGD-----FEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNV----MPFIDL 255 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~----~~~~~~ 255 (770)
-+.+.|+|.+|+|||++++.+++..... -...+|+. ... .. ....+...++..+...... .+..+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~-~~~~~~~~i~~~l~~~~~~~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-CPS---SR-TPRDFAQEILEALGLPLKSRQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-HHH---HS-SHHHHHHHHHHHHT-SSSSTS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-eCC---CC-CHHHHHHHHHHHhCccccccCCHHHHHHH
Confidence 4679999999999999999999886542 23445555 222 22 5678888888888765444 255567
Q ss_pred HHHHHCCCc-EEEEEeCCCCh-H--hHHHHHhcccCCCCCceEEEEcCc
Q 041067 256 IFRRLSRMK-VLIVFDDVTCL-S--QLQSLIGSLYWLTPVSRIIITTRN 300 (770)
Q Consensus 256 l~~~L~~kr-~LlVLDdv~~~-~--~~~~l~~~~~~~~~gs~IivTTR~ 300 (770)
+.+.+...+ .+||+|+++.. . .++.+..... ..+.++|++.+.
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 777776544 59999999876 3 2444433333 677788887765
No 67
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=3e-05 Score=82.18 Aligned_cols=149 Identities=16% Similarity=0.173 Sum_probs=93.8
Q ss_pred CCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHh------CCCCceEEEEecchhhccCCCHHHH
Q 041067 162 NKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKIS------GDFEGSCFLENVREESQRSGGLSCL 235 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~------~~f~~~~~~~~~~~~~~~~~~~~~l 235 (770)
++++|-+..++.+...+..+. -.....++|+.|+||||+|+.++..+- .|.|...|.. ... ... .+..+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~~~--~~i-~v~~i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-INK--KSI-GVDDI 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-ccC--CCC-CHHHH
Confidence 357899999999999885332 345778999999999999999998752 2344333432 111 111 23332
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCC--CChHhHHHHHhcccCCCCCceEEEEcCchhhh-hh-cCcce
Q 041067 236 QQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDV--TCLSQLQSLIGSLYWLTPVSRIIITTRNKQVL-RN-WGVRK 311 (770)
Q Consensus 236 ~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv--~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~-~~-~~~~~ 311 (770)
. ++...+.... ..+++=++|+|++ .+...++.++..+....+++.+|++|.+.+.. .. .....
T Consensus 79 r-~~~~~~~~~p------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 79 R-NIIEEVNKKP------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ 145 (313)
T ss_pred H-HHHHHHhcCc------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhce
Confidence 2 2222221100 1233445555555 45567899999988778899999888766432 22 22347
Q ss_pred EEEeCccChHHHHHHHH
Q 041067 312 IYEMKALEYHHAIELFI 328 (770)
Q Consensus 312 ~~~l~~L~~~ea~~Lf~ 328 (770)
.+++.++++++....+.
T Consensus 146 ~~~~~~~~~~~~~~~l~ 162 (313)
T PRK05564 146 IYKLNRLSKEEIEKFIS 162 (313)
T ss_pred eeeCCCcCHHHHHHHHH
Confidence 89999999999876663
No 68
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=9e-05 Score=84.15 Aligned_cols=150 Identities=18% Similarity=0.251 Sum_probs=93.0
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC---------------------CCceEE
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD---------------------FEGSCF 218 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~~ 218 (770)
.-+++||.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.+-.. |...+.
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviE 92 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVE 92 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEE
Confidence 34579999999999999986442 24556799999999999999999875321 111111
Q ss_pred EEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH--hHHHHHhcccCCCCCceEEE
Q 041067 219 LENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS--QLQSLIGSLYWLTPVSRIII 296 (770)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~Iiv 296 (770)
+.. .... ++..+. +++..... .-..++.-++|||+++... .++.++..+.......++|+
T Consensus 93 IDA----as~r-gVDdIR-eLIe~a~~------------~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FIL 154 (830)
T PRK07003 93 MDA----ASNR-GVDEMA-ALLERAVY------------APVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFIL 154 (830)
T ss_pred ecc----cccc-cHHHHH-HHHHHHHh------------ccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 110 0000 111111 11111000 0012345588899998764 47888877766666788887
Q ss_pred EcCchhhh-hh-cCcceEEEeCccChHHHHHHHH
Q 041067 297 TTRNKQVL-RN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 297 TTR~~~v~-~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
||++.+-. .. ......+.++.++.++..+.+.
T Consensus 155 aTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~ 188 (830)
T PRK07003 155 ATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLE 188 (830)
T ss_pred EECChhhccchhhhheEEEecCCcCHHHHHHHHH
Confidence 77765432 22 2335789999999999988775
No 69
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=3.1e-08 Score=97.52 Aligned_cols=174 Identities=24% Similarity=0.261 Sum_probs=122.1
Q ss_pred ccccccccCCCCcc--ccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccC--ccCCCCCC
Q 041067 556 EKLMLLEVPDSDIE--QLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLP--SRIFNLEF 631 (770)
Q Consensus 556 ~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp--~~i~~l~~ 631 (770)
..|++|+|+++.|+ ++-..+.++.+|+.|.|.+.. + .-|....+.+-.+|+.|+|++|+.+.... -.+.++++
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~-L--dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR-L--DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc-c--CcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence 45888888888887 455556788888888888743 1 11222234555789999999998766543 23457889
Q ss_pred CcEEEecCCCCCCccCC----ccccCccEEeccCcCcc----ccCcccccCCCCCEEeccCCCCCCC-CCcccCCCCCCc
Q 041067 632 LTKLNLSGCSKLKRLPE----ISSGNISWLFLRETAIE----ELPSSIERLHRLGYLDLLDCKRLKS-LPRSLWMLKSLG 702 (770)
Q Consensus 632 L~~L~L~~~~~l~~lp~----~~~~~L~~L~l~~~~i~----~lp~~i~~l~~L~~L~L~~~~~~~~-lp~~l~~l~~L~ 702 (770)
|..|+|++|....+.-. .++.+|+.|+++++.-. .+..-..++++|.+|+|++|..+.. ....+.+++.|+
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 99999999976554422 22278999999876321 3333356789999999999876543 234577889999
Q ss_pred EEEeecCCCCcccCc---ccCCCCCCcEEEccCCC
Q 041067 703 VLNLSGCSNLQRLPE---CLAQFSSPIILNLAKTN 734 (770)
Q Consensus 703 ~L~l~~~~~~~~lp~---~l~~l~~L~~L~L~~~~ 734 (770)
+|.++.|..+ .|+ .+...|+|.+|++.||-
T Consensus 342 ~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 342 HLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 9999999754 333 46788899999998873
No 70
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.21 E-value=1.9e-07 Score=103.09 Aligned_cols=190 Identities=24% Similarity=0.230 Sum_probs=92.0
Q ss_pred ceeEEEEcCCCCCCCCC-CCCcccccccccCCCCccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEec
Q 041067 535 EVKYLHWYGYPLKSLPS-NLSAEKLMLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNL 613 (770)
Q Consensus 535 ~Lr~L~l~~~~l~~lp~-~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L 613 (770)
.+..+.+..+.+..+-. .-.+.+|..|++.+|.++++...+..+++|++|+++++ .+-.+..+..++.|+.|++
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-----~I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-----KITKLEGLSTLTLLKELNL 147 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-----ccccccchhhccchhhhee
Confidence 34444444444444222 22346666666666666666555566666666666663 2223334555555666666
Q ss_pred cCCCCCcccCccCCCCCCCcEEEecCCCCCCccCC---ccccCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCC
Q 041067 614 RGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPE---ISSGNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKS 690 (770)
Q Consensus 614 ~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~---~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~ 690 (770)
++|. +..++. +..+++|+.+++++|. +..++. ....+++.+.+.+|.+..+. ++..+..+..+++.+|.....
T Consensus 148 ~~N~-i~~~~~-~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 148 SGNL-ISDISG-LESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred ccCc-chhccC-CccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceec
Confidence 6665 333332 3345566666666654 333333 11145555555555554432 233333333334444432211
Q ss_pred CCcccCCCCC--CcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCc
Q 041067 691 LPRSLWMLKS--LGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIE 736 (770)
Q Consensus 691 lp~~l~~l~~--L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~ 736 (770)
- .+..+.. |+.++++++.. ...+..+..+.++..|++.+|.+.
T Consensus 224 ~--~l~~~~~~~L~~l~l~~n~i-~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 224 E--GLNELVMLHLRELYLSGNRI-SRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred c--CcccchhHHHHHHhcccCcc-ccccccccccccccccchhhcccc
Confidence 1 1222222 56666666432 333344555666666666666554
No 71
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.20 E-value=8.3e-06 Score=82.79 Aligned_cols=145 Identities=19% Similarity=0.322 Sum_probs=91.2
Q ss_pred CCCcccchHHHHH---HHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHH
Q 041067 161 KNKLVGVESKVEE---IESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQ 237 (770)
Q Consensus 161 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 237 (770)
-+++||.+..+.+ |.+++ +.+.+..+.+||++|+||||||+.+...-+.+- ..||. .+.......+++.+.+
T Consensus 137 L~dyvGQ~hlv~q~gllrs~i--eq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve-lSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 137 LDDYVGQSHLVGQDGLLRSLI--EQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE-LSATNAKTNDVRDIFE 211 (554)
T ss_pred HHHhcchhhhcCcchHHHHHH--HcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE-EeccccchHHHHHHHH
Confidence 3455665554433 22333 345677888999999999999999998755442 45554 3333332224433332
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCC--hHhHHHHHhcccCCCCCceEEE--EcCchhhhh---hcCcc
Q 041067 238 KLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTC--LSQLQSLIGSLYWLTPVSRIII--TTRNKQVLR---NWGVR 310 (770)
Q Consensus 238 ~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~Iiv--TTR~~~v~~---~~~~~ 310 (770)
+- . =...+.++|..|.+|.|.. ..|-+.+++.. ..|.-++| ||.++...- .+...
T Consensus 212 ~a----q-----------~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC 273 (554)
T KOG2028|consen 212 QA----Q-----------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRC 273 (554)
T ss_pred HH----H-----------HHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHhcc
Confidence 21 1 1123457889999999964 34556666654 56776665 788775432 23445
Q ss_pred eEEEeCccChHHHHHHHH
Q 041067 311 KIYEMKALEYHHAIELFI 328 (770)
Q Consensus 311 ~~~~l~~L~~~ea~~Lf~ 328 (770)
.++.++.|+.++-..++.
T Consensus 274 ~VfvLekL~~n~v~~iL~ 291 (554)
T KOG2028|consen 274 RVFVLEKLPVNAVVTILM 291 (554)
T ss_pred ceeEeccCCHHHHHHHHH
Confidence 789999999999888876
No 72
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=1.6e-05 Score=88.79 Aligned_cols=160 Identities=15% Similarity=0.129 Sum_probs=94.9
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHh--CCCCceEEEEecchhhc--cCCCHHHH
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKIS--GDFEGSCFLENVREESQ--RSGGLSCL 235 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~~~~~~~~~--~~~~~~~l 235 (770)
.-++++|-+...+.|..++..+. -...+.++|++|+||||+|+.+++.+. +.+...||.+....... .+.++.
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~-- 88 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL-- 88 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE--
Confidence 34568999999999998886432 245679999999999999999998864 22333455431100000 000000
Q ss_pred HHHHHHHHhcC-CCCcchHHHHHHHH-----CCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEcCc-hhhhhh
Q 041067 236 QQKLLSNLLKH-KNVMPFIDLIFRRL-----SRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITTRN-KQVLRN 306 (770)
Q Consensus 236 ~~~ll~~~~~~-~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~-~~v~~~ 306 (770)
.+... ....+.+..+.+.+ .+++-++|+|+++.. ..++.++..+....+...+|++|.. ..+...
T Consensus 89 ------el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~ 162 (504)
T PRK14963 89 ------EIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPT 162 (504)
T ss_pred ------EecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChH
Confidence 00000 00011122222222 245668999999864 3577787777655556566655543 333332
Q ss_pred c-CcceEEEeCccChHHHHHHHH
Q 041067 307 W-GVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 307 ~-~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
. .....+++.+++.++..+.+.
T Consensus 163 I~SRc~~~~f~~ls~~el~~~L~ 185 (504)
T PRK14963 163 ILSRTQHFRFRRLTEEEIAGKLR 185 (504)
T ss_pred HhcceEEEEecCCCHHHHHHHHH
Confidence 2 235689999999999988886
No 73
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.17 E-value=8.2e-05 Score=80.02 Aligned_cols=163 Identities=19% Similarity=0.192 Sum_probs=89.4
Q ss_pred CCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC-CCc-eEEEEecchhhccCCCHHHHHH-
Q 041067 161 KNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD-FEG-SCFLENVREESQRSGGLSCLQQ- 237 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~-~~~~~~~~~~~~~~~~~~~l~~- 237 (770)
-+.++|++..++.+..++..+ ..+.+.++|.+|+||||+|+.+++.+..+ ++. .+++. ..+..... ...+..
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~~--~~~~~~~ 88 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQG--KKYLVED 88 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhcc--hhhhhcC
Confidence 456899999999999988543 34467899999999999999999886543 222 22332 22211000 000000
Q ss_pred -HHHHHHhcC-CCCcchHHHHHHH---H------CCCcEEEEEeCCCChH--hHHHHHhcccCCCCCceEEEEcCchh-h
Q 041067 238 -KLLSNLLKH-KNVMPFIDLIFRR---L------SRMKVLIVFDDVTCLS--QLQSLIGSLYWLTPVSRIIITTRNKQ-V 303 (770)
Q Consensus 238 -~ll~~~~~~-~~~~~~~~~l~~~---L------~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~-v 303 (770)
.+....... .........+++. . ...+-+||+||++... ..+.+...+......+++|+||.... +
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 89 PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred cchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 000000000 0000011112211 1 1334589999997653 34445544444455677887775432 2
Q ss_pred hhhc-CcceEEEeCccChHHHHHHHH
Q 041067 304 LRNW-GVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 304 ~~~~-~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
.... .....+++.+++.++....+.
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~ 194 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLE 194 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHH
Confidence 2221 224578899999998887775
No 74
>PRK08727 hypothetical protein; Validated
Probab=98.16 E-value=7.7e-05 Score=75.28 Aligned_cols=132 Identities=15% Similarity=0.162 Sum_probs=78.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcE
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKV 265 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~ 265 (770)
..+.|+|..|+|||+||+++++....+...+.|+. ..+ ....+.. ..+.+ .+.-
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~~~----------~~~~~~~--------------~~~~l-~~~d 95 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-LQA----------AAGRLRD--------------ALEAL-EGRS 95 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-HHH----------hhhhHHH--------------HHHHH-hcCC
Confidence 45999999999999999999998766655666765 111 1111100 11111 1234
Q ss_pred EEEEeCCCChH---hHH-HHHhcccC-CCCCceEEEEcCch---------hhhhhcCcceEEEeCccChHHHHHHHHH-h
Q 041067 266 LIVFDDVTCLS---QLQ-SLIGSLYW-LTPVSRIIITTRNK---------QVLRNWGVRKIYEMKALEYHHAIELFIM-K 330 (770)
Q Consensus 266 LlVLDdv~~~~---~~~-~l~~~~~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~-~ 330 (770)
+||+||++... .|+ .+...+.. ...|..||+||+.. ++...+.....+++++++.++..+++.. .
T Consensus 96 lLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a 175 (233)
T PRK08727 96 LVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERA 175 (233)
T ss_pred EEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHH
Confidence 89999997432 232 23322211 23466799999843 2222333356899999999999999861 1
Q ss_pred ccCCCchhHHHHh
Q 041067 331 YAQGVPLALKVLG 343 (770)
Q Consensus 331 ~~~glPLal~~~g 343 (770)
.-.|+++.-.++.
T Consensus 176 ~~~~l~l~~e~~~ 188 (233)
T PRK08727 176 QRRGLALDEAAID 188 (233)
T ss_pred HHcCCCCCHHHHH
Confidence 2246665544443
No 75
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=0.00017 Score=77.95 Aligned_cols=156 Identities=16% Similarity=0.207 Sum_probs=92.7
Q ss_pred CCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCc---eEEEEecchhhccCCCHHHH
Q 041067 159 DNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEG---SCFLENVREESQRSGGLSCL 235 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~~~~l 235 (770)
..-++++|.+..++.+...+..+. -...+.++|+.|+||||+|+.+++.+...... .|-.+ ..
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c-------------~~ 78 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC-------------II 78 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC-------------HH
Confidence 344579999999999999886432 34567899999999999999999876421110 00000 00
Q ss_pred HHHHHHH----Hh---cCC-CCcchHHHHHHHH-----CCCcEEEEEeCCCChH--hHHHHHhcccCCCCCceEEEEcCc
Q 041067 236 QQKLLSN----LL---KHK-NVMPFIDLIFRRL-----SRMKVLIVFDDVTCLS--QLQSLIGSLYWLTPVSRIIITTRN 300 (770)
Q Consensus 236 ~~~ll~~----~~---~~~-~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~ 300 (770)
..++... +. ... ...+....+.+.+ .+++-++|+|+++... .++.++..+....+..++|++|.+
T Consensus 79 c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~ 158 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTD 158 (363)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 0000000 00 000 0001111222221 2345699999998765 477787777665667777776655
Q ss_pred hh-hhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 301 KQ-VLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 301 ~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
.+ +... .+....+++++++.++..+.+.
T Consensus 159 ~~~l~~tI~SRc~~~~~~~l~~~el~~~L~ 188 (363)
T PRK14961 159 VEKIPKTILSRCLQFKLKIISEEKIFNFLK 188 (363)
T ss_pred hHhhhHHHHhhceEEeCCCCCHHHHHHHHH
Confidence 43 3322 2334789999999999887765
No 76
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=0.00024 Score=76.25 Aligned_cols=165 Identities=12% Similarity=0.078 Sum_probs=96.8
Q ss_pred CCCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHh-CC-CCceEE-E--EecchhhccCCCH
Q 041067 158 RDNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKIS-GD-FEGSCF-L--ENVREESQRSGGL 232 (770)
Q Consensus 158 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~-f~~~~~-~--~~~~~~~~~~~~~ 232 (770)
|....+++|-+...+.+.+.+..+. -...+.++|+.|+||||+|..+++.+- .. ...... . .... .. +.
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~----~~ 88 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-ID----PD 88 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CC----CC
Confidence 4455689999999999999886442 245688999999999999999998752 21 110000 0 0000 00 00
Q ss_pred HHHHHHHHHHH-------h----cCC----CC--cchHHHHHHHHC-----CCcEEEEEeCCCCh--HhHHHHHhcccCC
Q 041067 233 SCLQQKLLSNL-------L----KHK----NV--MPFIDLIFRRLS-----RMKVLIVFDDVTCL--SQLQSLIGSLYWL 288 (770)
Q Consensus 233 ~~l~~~ll~~~-------~----~~~----~~--~~~~~~l~~~L~-----~kr~LlVLDdv~~~--~~~~~l~~~~~~~ 288 (770)
-...+.+.... . ++. .. .+.+..+.+.+. +.+-++|+|+++.. .....++..+...
T Consensus 89 c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep 168 (365)
T PRK07471 89 HPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP 168 (365)
T ss_pred ChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 00111110000 0 000 00 122333444432 45678999999764 3567777777655
Q ss_pred CCCceEEEEcCchh-hhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 289 TPVSRIIITTRNKQ-VLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 289 ~~gs~IivTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
.+++.+|++|.+.+ +... ......+.+.+++.++..+++.
T Consensus 169 p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~ 210 (365)
T PRK07471 169 PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALA 210 (365)
T ss_pred CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHH
Confidence 56777777776654 3322 2335789999999999998885
No 77
>PLN03025 replication factor C subunit; Provisional
Probab=98.14 E-value=1.9e-05 Score=83.85 Aligned_cols=154 Identities=15% Similarity=0.253 Sum_probs=89.2
Q ss_pred CCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHh-CCCCceEEEEecchhhccCCCHHHHHH
Q 041067 159 DNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKIS-GDFEGSCFLENVREESQRSGGLSCLQQ 237 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~ 237 (770)
..-.+++|.++.++.|..++..+ ..+.+-++|++|+||||+|+.+++.+. ..|...+.-.+. +... +...+.
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~---sd~~-~~~~vr- 82 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA---SDDR-GIDVVR- 82 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc---cccc-cHHHHH-
Confidence 34456899999899888887533 344577999999999999999999863 334322221111 1111 222222
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH--hHHHHHhcccCCCCCceEEEEcCch-hhhhh-cCcceEE
Q 041067 238 KLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS--QLQSLIGSLYWLTPVSRIIITTRNK-QVLRN-WGVRKIY 313 (770)
Q Consensus 238 ~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~-~v~~~-~~~~~~~ 313 (770)
............. -.++.-++|+|+++... ..+.+...+......+++|+++... .+... ......+
T Consensus 83 ~~i~~~~~~~~~~---------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 83 NKIKMFAQKKVTL---------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred HHHHHHHhccccC---------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcc
Confidence 1111111000000 01345689999998753 3445554444445667777776543 22211 1123578
Q ss_pred EeCccChHHHHHHHH
Q 041067 314 EMKALEYHHAIELFI 328 (770)
Q Consensus 314 ~l~~L~~~ea~~Lf~ 328 (770)
+++++++++....+.
T Consensus 154 ~f~~l~~~~l~~~L~ 168 (319)
T PLN03025 154 RFSRLSDQEILGRLM 168 (319)
T ss_pred cCCCCCHHHHHHHHH
Confidence 999999999887775
No 78
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.13 E-value=5.2e-06 Score=87.29 Aligned_cols=88 Identities=18% Similarity=0.128 Sum_probs=59.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhC-CCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCc----------chHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISG-DFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVM----------PFID 254 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~----------~~~~ 254 (770)
...+|+|++|+||||||+++|+.+.. +|+..+|+..+.+.. . ++..+++++...+.....+. ...+
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~--~-EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERP--E-EVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCch--h-HHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999998654 799999998666632 2 66777777764332211111 1122
Q ss_pred HHHHH-HCCCcEEEEEeCCCChH
Q 041067 255 LIFRR-LSRMKVLIVFDDVTCLS 276 (770)
Q Consensus 255 ~l~~~-L~~kr~LlVLDdv~~~~ 276 (770)
.-++. -.+++++|++|++....
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHHHH
Confidence 22222 25799999999996543
No 79
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.13 E-value=9.6e-05 Score=78.81 Aligned_cols=151 Identities=21% Similarity=0.309 Sum_probs=87.8
Q ss_pred CCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC-CCceEEEEecchhhccCCCHHHHHHHH
Q 041067 161 KNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD-FEGSCFLENVREESQRSGGLSCLQQKL 239 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~l 239 (770)
-.+++|+++.++.+..++..+ ..+.+.++|.+|+||||+|+.+++..... +.. .++. .. .+... +...+...+
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~-~~i~-~~-~~~~~-~~~~~~~~i 89 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRE-NFLE-LN-ASDER-GIDVIRNKI 89 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCcccc-ceEE-ec-ccccc-chHHHHHHH
Confidence 346899999999999998643 34457999999999999999999986432 222 2222 10 01111 222111111
Q ss_pred HHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEcCchh-hhhh-cCcceEEEe
Q 041067 240 LSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITTRNKQ-VLRN-WGVRKIYEM 315 (770)
Q Consensus 240 l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~-v~~~-~~~~~~~~l 315 (770)
........ .....+-++++|+++.. +..+.+...+....+.+++|+++.... +... ......+++
T Consensus 90 -~~~~~~~~----------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~ 158 (319)
T PRK00440 90 -KEFARTAP----------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRF 158 (319)
T ss_pred -HHHHhcCC----------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeee
Confidence 11111000 00123568999998754 334556655555556677777764321 2111 112346899
Q ss_pred CccChHHHHHHHH
Q 041067 316 KALEYHHAIELFI 328 (770)
Q Consensus 316 ~~L~~~ea~~Lf~ 328 (770)
++++.++....+.
T Consensus 159 ~~l~~~ei~~~l~ 171 (319)
T PRK00440 159 SPLKKEAVAERLR 171 (319)
T ss_pred CCCCHHHHHHHHH
Confidence 9999998877775
No 80
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.12 E-value=1.6e-05 Score=92.12 Aligned_cols=140 Identities=24% Similarity=0.325 Sum_probs=84.6
Q ss_pred CCCcccchHHHH---HHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHH
Q 041067 161 KNKLVGVESKVE---EIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQ 237 (770)
Q Consensus 161 ~~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 237 (770)
-++++|.+..+. .+.+.+. .+....+.++|++|+||||+|+.+++.....|. .+. ... . ++..+.
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~--~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~ln---a~~--~-~i~dir- 94 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIK--ADRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLN---AVL--A-GVKDLR- 94 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eeh---hhh--h-hhHHHH-
Confidence 356889888774 4555654 334567789999999999999999988765542 111 110 0 221111
Q ss_pred HHHHHHhcCCCCcchHHHHHHHH--CCCcEEEEEeCCCC--hHhHHHHHhcccCCCCCceEEE--EcCchh--hhhh-cC
Q 041067 238 KLLSNLLKHKNVMPFIDLIFRRL--SRMKVLIVFDDVTC--LSQLQSLIGSLYWLTPVSRIII--TTRNKQ--VLRN-WG 308 (770)
Q Consensus 238 ~ll~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~Iiv--TTR~~~--v~~~-~~ 308 (770)
+.+ ....+.+ .+++.++|+||++. ..+.+.+++.. ..|+.++| ||.+.. +... ..
T Consensus 95 ~~i-------------~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~S 158 (725)
T PRK13341 95 AEV-------------DRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVS 158 (725)
T ss_pred HHH-------------HHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhc
Confidence 111 1111111 24678999999974 44566776654 34555555 344432 1111 12
Q ss_pred cceEEEeCccChHHHHHHHH
Q 041067 309 VRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 309 ~~~~~~l~~L~~~ea~~Lf~ 328 (770)
....+.+++++.++...++.
T Consensus 159 R~~v~~l~pLs~edi~~IL~ 178 (725)
T PRK13341 159 RSRLFRLKSLSDEDLHQLLK 178 (725)
T ss_pred cccceecCCCCHHHHHHHHH
Confidence 24579999999999998886
No 81
>PRK04195 replication factor C large subunit; Provisional
Probab=98.08 E-value=0.00012 Score=82.39 Aligned_cols=150 Identities=17% Similarity=0.244 Sum_probs=88.9
Q ss_pred CCCCCCcccchHHHHHHHHhhcCC--CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHH
Q 041067 158 RDNKNKLVGVESKVEEIESILGVE--SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCL 235 (770)
Q Consensus 158 ~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 235 (770)
|..-.+++|.++.++++..++..- ....+.+.|+|++|+||||+|+.+++++. |+... + +.++. . ... .
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~ie-l-nasd~---r-~~~-~ 80 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEVIE-L-NASDQ---R-TAD-V 80 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCEEE-E-ccccc---c-cHH-H
Confidence 334557999999999999998632 12267899999999999999999999863 22221 1 12111 1 111 2
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH------hHHHHHhcccCCCCCceEEEEcCchh-hhh--h
Q 041067 236 QQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS------QLQSLIGSLYWLTPVSRIIITTRNKQ-VLR--N 306 (770)
Q Consensus 236 ~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gs~IivTTR~~~-v~~--~ 306 (770)
...+........ .....++-+||+|+++... .+..+...+. ..+..||+|+.+.. ... .
T Consensus 81 i~~~i~~~~~~~----------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 81 IERVAGEAATSG----------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHHHHHHhhccC----------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhH
Confidence 222222211100 0011367899999997642 2555555443 23445666664432 111 1
Q ss_pred cCcceEEEeCccChHHHHHHHH
Q 041067 307 WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 307 ~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
......+.+.+++.++....+.
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~ 170 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLK 170 (482)
T ss_pred hccceEEEecCCCHHHHHHHHH
Confidence 1234678999999998877765
No 82
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=0.00036 Score=78.50 Aligned_cols=151 Identities=19% Similarity=0.196 Sum_probs=92.7
Q ss_pred CCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC---------------------CceE
Q 041067 159 DNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDF---------------------EGSC 217 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~ 217 (770)
..-.++||.+...+.|..++..+. -...+.++|+.|+||||+|+.+++.+-... ...+
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDvi 90 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLI 90 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceE
Confidence 344579999999999999996442 246778999999999999999998753211 0111
Q ss_pred EEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEE
Q 041067 218 FLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRII 295 (770)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Ii 295 (770)
.+.. .... ++..+. +++.... ..-..+++-++|+|+|+.. ...+.++..+.....+.++|
T Consensus 91 EIDA----As~~-~VddIR-eli~~~~------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FI 152 (702)
T PRK14960 91 EIDA----ASRT-KVEDTR-ELLDNVP------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFL 152 (702)
T ss_pred Eecc----cccC-CHHHHH-HHHHHHh------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEE
Confidence 1110 0000 111111 1111100 0011356678999999865 35677777776555667777
Q ss_pred EEcCchh-hhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 296 ITTRNKQ-VLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 296 vTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
++|.+.. +... ......+++++++.++..+.+.
T Consensus 153 LaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~ 187 (702)
T PRK14960 153 FATTDPQKLPITVISRCLQFTLRPLAVDEITKHLG 187 (702)
T ss_pred EEECChHhhhHHHHHhhheeeccCCCHHHHHHHHH
Confidence 7776543 2211 2335789999999999887775
No 83
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=0.0002 Score=83.06 Aligned_cols=154 Identities=17% Similarity=0.212 Sum_probs=93.3
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC-C-C-ceEEEEec-ch-----------
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD-F-E-GSCFLENV-RE----------- 224 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-~-~~~~~~~~-~~----------- 224 (770)
.-.++||-+..++.|.+++..+. -...+.++|..|+||||+|+.+++.+... . . ..|..|.. ..
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 34579999999999999886432 24456899999999999999999886432 1 0 01111100 00
Q ss_pred --hhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEcCc
Q 041067 225 --ESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITTRN 300 (770)
Q Consensus 225 --~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~ 300 (770)
..... ++..+ +++...+. ..-..+++-++|+|+++.. +..+.|+..+.......++|++|.+
T Consensus 93 idAas~~-kVDdI-ReLie~v~------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe 158 (944)
T PRK14949 93 VDAASRT-KVDDT-RELLDNVQ------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD 158 (944)
T ss_pred ecccccc-CHHHH-HHHHHHHH------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC
Confidence 00000 12111 11211110 0112366779999999764 4578887777665666666665554
Q ss_pred h-hhhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 301 K-QVLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 301 ~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
. .+... ......|++++++.++..+.+.
T Consensus 159 ~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~ 188 (944)
T PRK14949 159 PQKLPVTVLSRCLQFNLKSLTQDEIGTQLN 188 (944)
T ss_pred chhchHHHHHhheEEeCCCCCHHHHHHHHH
Confidence 4 34322 2235789999999999887775
No 84
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.06 E-value=0.00016 Score=78.85 Aligned_cols=148 Identities=19% Similarity=0.303 Sum_probs=85.9
Q ss_pred CCCcccchHHHHHHHHhhcC-----------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccC
Q 041067 161 KNKLVGVESKVEEIESILGV-----------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRS 229 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 229 (770)
.+.+.|+++.++++.+.+.. +-...+-|.++|++|+|||++|++++++.... |+. +
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-----~i~-v------- 196 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-----FIR-V------- 196 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-----EEE-e-------
Confidence 34688999999999887632 11235678999999999999999999986543 221 0
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHH-HCCCcEEEEEeCCCChH------------h----HHHHHhcccCC--CC
Q 041067 230 GGLSCLQQKLLSNLLKHKNVMPFIDLIFRR-LSRMKVLIVFDDVTCLS------------Q----LQSLIGSLYWL--TP 290 (770)
Q Consensus 230 ~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~------------~----~~~l~~~~~~~--~~ 290 (770)
....+.... .+. .......+.+. -...+.+|++||++... . +..++.....+ ..
T Consensus 197 -~~~~l~~~~----~g~--~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 197 -VGSELVQKF----IGE--GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred -ehHHHhHhh----ccc--hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 001111110 000 00111111111 13467899999997531 1 12222222211 23
Q ss_pred CceEEEEcCchhhhhh-----cCcceEEEeCccChHHHHHHHH
Q 041067 291 VSRIIITTRNKQVLRN-----WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 291 gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+.+||.||...+.... ...+..++++..+.++..++|.
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~ 312 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILK 312 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHH
Confidence 5567777765543221 1235679999999999999986
No 85
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=0.00029 Score=79.01 Aligned_cols=163 Identities=15% Similarity=0.171 Sum_probs=90.8
Q ss_pred CCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC-CceEEEEecchhhccCCCHHHHHH
Q 041067 159 DNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDF-EGSCFLENVREESQRSGGLSCLQQ 237 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~ 237 (770)
..-+++||-+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+.+-..= +..--+. ...- +.-....
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-----~~PC-G~C~sC~ 85 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-----AQPC-GQCRACT 85 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-----CCCC-cccHHHH
Confidence 344579999999999999986432 245678899999999999999998753210 0000000 0000 0000000
Q ss_pred HHHH-------HHhcCC-CCcchHHHHHHH-----HCCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEE-EcCch
Q 041067 238 KLLS-------NLLKHK-NVMPFIDLIFRR-----LSRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIII-TTRNK 301 (770)
Q Consensus 238 ~ll~-------~~~~~~-~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Iiv-TTR~~ 301 (770)
.+.. .+.... ...+.+..+.+. ..++.-++|+|+++.. ..++.|+..+.....+.++|+ ||...
T Consensus 86 ~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~ 165 (700)
T PRK12323 86 EIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQ 165 (700)
T ss_pred HHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChH
Confidence 0000 000000 000111111111 1345668999999865 357788877765555666554 55544
Q ss_pred hhhhhc-CcceEEEeCccChHHHHHHHH
Q 041067 302 QVLRNW-GVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 302 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
.+...+ .....+.++.++.++..+.+.
T Consensus 166 kLlpTIrSRCq~f~f~~ls~eei~~~L~ 193 (700)
T PRK12323 166 KIPVTVLSRCLQFNLKQMPPGHIVSHLD 193 (700)
T ss_pred hhhhHHHHHHHhcccCCCChHHHHHHHH
Confidence 454332 234689999999998887765
No 86
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.04 E-value=0.00014 Score=73.53 Aligned_cols=139 Identities=13% Similarity=0.265 Sum_probs=79.3
Q ss_pred CCcccchH-HHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHH
Q 041067 162 NKLVGVES-KVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLL 240 (770)
Q Consensus 162 ~~~vGr~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 240 (770)
+.++|-.. .+..+..+... ...+.+.|+|+.|+|||+||+.+++.....-..+.|+. +..... .. .+
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~~~---~~----~~-- 90 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKRAW---FV----PE-- 90 (235)
T ss_pred ccccCccHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHHhh---hh----HH--
Confidence 34446333 33344444322 23357899999999999999999998765544455654 211100 00 01
Q ss_pred HHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh---HhHHHHH-hcccC-CCCC-ceEEEEcCch---------hhhh
Q 041067 241 SNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL---SQLQSLI-GSLYW-LTPV-SRIIITTRNK---------QVLR 305 (770)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~~~~l~-~~~~~-~~~g-s~IivTTR~~---------~v~~ 305 (770)
+.+.+.. --++++||++.. .+|+..+ ..+.. ...| .++|+||+.. ++..
T Consensus 91 ---------------~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S 154 (235)
T PRK08084 91 ---------------VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS 154 (235)
T ss_pred ---------------HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH
Confidence 1111111 137889999653 3444322 22211 1233 4789998754 2333
Q ss_pred hcCcceEEEeCccChHHHHHHHH
Q 041067 306 NWGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 306 ~~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
.+....+++++++++++-.+.+.
T Consensus 155 Rl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 155 RLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred HHhCCceeeecCCCHHHHHHHHH
Confidence 34455799999999999888875
No 87
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.04 E-value=3.9e-06 Score=65.06 Aligned_cols=58 Identities=33% Similarity=0.519 Sum_probs=37.4
Q ss_pred CCCcEEEeecCCCCcccC-cccCCCCCCcEEEccCCCCcccch-hhhCCCCCcEEecccCc
Q 041067 699 KSLGVLNLSGCSNLQRLP-ECLAQFSSPIILNLAKTNIERIPK-SISQLLMLRYLLLSYSE 757 (770)
Q Consensus 699 ~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~c~ 757 (770)
++|++|++++|. +..+| ..+..+++|+.|++++|.++.++. .+..+++|+.|++++|+
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 356667777653 33444 466677777777777777776554 45677777777777765
No 88
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.02 E-value=0.00017 Score=76.77 Aligned_cols=165 Identities=19% Similarity=0.246 Sum_probs=95.7
Q ss_pred CCCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHH
Q 041067 158 RDNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQ 237 (770)
Q Consensus 158 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 237 (770)
|..-.+++|.+...+.+..++..+ .-..++.++|.+|+||||+|+.+++.....| ..+. ... . ....+..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~~~----~-~~~~i~~ 86 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-GSD----C-RIDFVRN 86 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-cCc----c-cHHHHHH
Confidence 344567999999999999998643 2356777799999999999999998764322 2222 111 1 1121111
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh---HhHHHHHhcccCCCCCceEEEEcCchhhh-hh-cCcceE
Q 041067 238 KLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL---SQLQSLIGSLYWLTPVSRIIITTRNKQVL-RN-WGVRKI 312 (770)
Q Consensus 238 ~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~~~~l~~~~~~~~~gs~IivTTR~~~v~-~~-~~~~~~ 312 (770)
.+ ...... ..+.+.+-++|+||++.. +..+.+...+.....++++|+||...... .. ......
T Consensus 87 ~l-~~~~~~-----------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 87 RL-TRFAST-----------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred HH-HHHHHh-----------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 11 111100 001234557889999765 22334444344456778899988754321 11 122356
Q ss_pred EEeCccChHHHHHHHH--------HhccCCCchhHHHHhh
Q 041067 313 YEMKALEYHHAIELFI--------MKYAQGVPLALKVLGC 344 (770)
Q Consensus 313 ~~l~~L~~~ea~~Lf~--------~~~~~glPLal~~~g~ 344 (770)
+.++..+.++..+++. .-...|.|+.-..+..
T Consensus 155 i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~ 194 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAA 194 (316)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 7888888888776654 2223677775444333
No 89
>PRK05642 DNA replication initiation factor; Validated
Probab=98.02 E-value=0.00018 Score=72.61 Aligned_cols=118 Identities=14% Similarity=0.306 Sum_probs=72.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCc
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMK 264 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr 264 (770)
...+.|||..|+|||.||+++++.+..+-..++|+. . ..+... ...+.+.+++-.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~----------~~~~~~--------------~~~~~~~~~~~d 99 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-L----------AELLDR--------------GPELLDNLEQYE 99 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-H----------HHHHhh--------------hHHHHHhhhhCC
Confidence 357899999999999999999988765545566765 1 111110 012223333323
Q ss_pred EEEEEeCCCCh---HhHHH-HHhcccC-CCCCceEEEEcCchh--h-------hhhcCcceEEEeCccChHHHHHHHH
Q 041067 265 VLIVFDDVTCL---SQLQS-LIGSLYW-LTPVSRIIITTRNKQ--V-------LRNWGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 265 ~LlVLDdv~~~---~~~~~-l~~~~~~-~~~gs~IivTTR~~~--v-------~~~~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
++|+||+... .+|+. +...+.. ...|.+||+||+... . ...+....+++++++++++-.+.+.
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 6788999643 34443 3333321 235678888887431 1 1122334789999999999988876
No 90
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=8.6e-05 Score=80.31 Aligned_cols=145 Identities=14% Similarity=0.165 Sum_probs=89.8
Q ss_pred CCcccchHHHHHHHHhhcCCCC--------CeEEEEEEecCCCcHHHHHHHHHHHHhCCC--------------------
Q 041067 162 NKLVGVESKVEEIESILGVESK--------DVYSLGIWGIGGIGKTTIARAIFDKISGDF-------------------- 213 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-------------------- 213 (770)
+.++|-+..++.|.+.+..+.. -.+.+.++|+.|+||||+|+.++..+-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 3588999999999999975431 246688999999999999999998753221
Q ss_pred CceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH-----CCCcEEEEEeCCCChH--hHHHHHhccc
Q 041067 214 EGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRL-----SRMKVLIVFDDVTCLS--QLQSLIGSLY 286 (770)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~ 286 (770)
+...++.. .. ... .+.. +..+.+.. .+++-++|+|+++... ..+.++..+.
T Consensus 85 pD~~~i~~-~~--~~i-~i~~------------------iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LE 142 (394)
T PRK07940 85 PDVRVVAP-EG--LSI-GVDE------------------VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVE 142 (394)
T ss_pred CCEEEecc-cc--ccC-CHHH------------------HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhh
Confidence 11112210 00 000 1111 11222222 2345578889997653 4566776665
Q ss_pred CCCCCceEEEEcCch-hhhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 287 WLTPVSRIIITTRNK-QVLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 287 ~~~~gs~IivTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
...++..+|++|.+. .+... ......+.+.+++.++..+.+.
T Consensus 143 ep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 143 EPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLV 186 (394)
T ss_pred cCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHH
Confidence 556677666666554 44433 2335789999999999988774
No 91
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.00 E-value=9.3e-05 Score=85.11 Aligned_cols=164 Identities=15% Similarity=0.117 Sum_probs=95.4
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhC--CC---CceEEEE-ecchhhccCCCHH
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISG--DF---EGSCFLE-NVREESQRSGGLS 233 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f---~~~~~~~-~~~~~~~~~~~~~ 233 (770)
.-+.++|++..+..+...+.. .....+.|+|.+|+||||+|+.+++..+. .+ ...-|+. +.... .. +..
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l--~~-d~~ 226 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL--RW-DPR 226 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc--cC-CHH
Confidence 345799999999998877743 33457999999999999999999876532 22 1223332 11111 00 111
Q ss_pred HHHHHH---------------HHHHh-------------------cCCC--CcchHHHHHHHHCCCcEEEEEeCCCChH-
Q 041067 234 CLQQKL---------------LSNLL-------------------KHKN--VMPFIDLIFRRLSRMKVLIVFDDVTCLS- 276 (770)
Q Consensus 234 ~l~~~l---------------l~~~~-------------------~~~~--~~~~~~~l~~~L~~kr~LlVLDdv~~~~- 276 (770)
.+...+ +.... ++.+ +...+..+.+.++++++.++-|+.|..+
T Consensus 227 ~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 227 EVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 111111 11000 0000 0145667778888888888877665433
Q ss_pred -hHHHHHhcccCCCCCceEEE--EcCchhhhh-hc-CcceEEEeCccChHHHHHHHH
Q 041067 277 -QLQSLIGSLYWLTPVSRIII--TTRNKQVLR-NW-GVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 277 -~~~~l~~~~~~~~~gs~Iiv--TTR~~~v~~-~~-~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
.|+.+...+....+...|+| ||++..... .+ .....+.+.+++.++.++++.
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~ 363 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVL 363 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHH
Confidence 46666655555455555665 677554221 11 123467889999999988875
No 92
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.00 E-value=5.4e-07 Score=91.16 Aligned_cols=202 Identities=16% Similarity=0.131 Sum_probs=126.8
Q ss_pred ccccccccCCCCcc-----ccccccccCcCCcEEccCcCc--CccccCCC-----CCCCCCccceeEEeccCCCCCcccC
Q 041067 556 EKLMLLEVPDSDIE-----QLWDCVKHYRKLNQIIPAACN--KLIAKTPN-----PMLMPRLNKLVLLNLRGSKSLKRLP 623 (770)
Q Consensus 556 ~~L~~L~l~~~~i~-----~l~~~~~~l~~L~~L~L~~~~--~l~~~~p~-----~~~~~~L~~L~~L~L~~~~~l~~lp 623 (770)
..++.+++++|.+. .+.+.+.+.++|+..+++.-. .+..++|. ...+-..++|++||||+|-+-..-+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 34455555555443 234445556666666665421 01111221 0012233578888888887544433
Q ss_pred c----cCCCCCCCcEEEecCCCCCCccCC-------------ccc--cCccEEeccCcCccccC-----cccccCCCCCE
Q 041067 624 S----RIFNLEFLTKLNLSGCSKLKRLPE-------------ISS--GNISWLFLRETAIEELP-----SSIERLHRLGY 679 (770)
Q Consensus 624 ~----~i~~l~~L~~L~L~~~~~l~~lp~-------------~~~--~~L~~L~l~~~~i~~lp-----~~i~~l~~L~~ 679 (770)
+ -+..+.+|+.|.|.+|..-..--. -.. +.|+++...+|++..-+ ..+...+.|+.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 2 344577888888888863211000 001 57889999988887544 34667789999
Q ss_pred EeccCCCCCC----CCCcccCCCCCCcEEEeecCCCCc----ccCcccCCCCCCcEEEccCCCCc-----ccchhh-hCC
Q 041067 680 LDLLDCKRLK----SLPRSLWMLKSLGVLNLSGCSNLQ----RLPECLAQFSSPIILNLAKTNIE-----RIPKSI-SQL 745 (770)
Q Consensus 680 L~L~~~~~~~----~lp~~l~~l~~L~~L~l~~~~~~~----~lp~~l~~l~~L~~L~L~~~~l~-----~lp~~l-~~l 745 (770)
+.++.|.+.. -+...+..+++|++|+|..|.... .+...+..+++|+.|++++|.++ .+-..+ ...
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~ 269 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESA 269 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccC
Confidence 9999887532 233457789999999999986543 24455677889999999999987 233333 347
Q ss_pred CCCcEEecccCc
Q 041067 746 LMLRYLLLSYSE 757 (770)
Q Consensus 746 ~~L~~L~l~~c~ 757 (770)
|+|+.|.+.+|.
T Consensus 270 p~L~vl~l~gNe 281 (382)
T KOG1909|consen 270 PSLEVLELAGNE 281 (382)
T ss_pred CCCceeccCcch
Confidence 899999999986
No 93
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00018 Score=77.07 Aligned_cols=165 Identities=16% Similarity=0.230 Sum_probs=100.9
Q ss_pred CCCCCCcccchHHHHHHHHhhcC--CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCc--eEEEEecchhhccCCCHH
Q 041067 158 RDNKNKLVGVESKVEEIESILGV--ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEG--SCFLENVREESQRSGGLS 233 (770)
Q Consensus 158 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~ 233 (770)
...++.+.+||++++++...|.. ......-+.|+|.+|.|||+.++.+++++...... .+++. +.... ..-
T Consensus 13 ~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN-c~~~~----t~~ 87 (366)
T COG1474 13 DYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN-CLELR----TPY 87 (366)
T ss_pred CCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe-eeeCC----CHH
Confidence 34455699999999999988852 22233349999999999999999999997665333 46664 33322 445
Q ss_pred HHHHHHHHHHhcCCC----CcchHHHHHHHHC--CCcEEEEEeCCCChHhH--HHHHhcccCCCC-CceEEE--EcCchh
Q 041067 234 CLQQKLLSNLLKHKN----VMPFIDLIFRRLS--RMKVLIVFDDVTCLSQL--QSLIGSLYWLTP-VSRIII--TTRNKQ 302 (770)
Q Consensus 234 ~l~~~ll~~~~~~~~----~~~~~~~l~~~L~--~kr~LlVLDdv~~~~~~--~~l~~~~~~~~~-gs~Iiv--TTR~~~ 302 (770)
.+..+++..+..... ..+..+.+.+.+. ++.+++|||+++....- +.+...+.+... .++|+| ++-+..
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~ 167 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDK 167 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHH
Confidence 666777776643222 1156677777775 47799999999764321 233333333222 354443 343333
Q ss_pred hhhh--------cCcceEEEeCccChHHHHHHHH
Q 041067 303 VLRN--------WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 303 v~~~--------~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
.... ++. ..+..++-+.+|-...+.
T Consensus 168 ~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~ 200 (366)
T COG1474 168 FLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILR 200 (366)
T ss_pred HHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHH
Confidence 3222 222 235677777777666665
No 94
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.00 E-value=0.00035 Score=75.69 Aligned_cols=151 Identities=17% Similarity=0.212 Sum_probs=90.5
Q ss_pred CCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC----CC-----------------ceE
Q 041067 159 DNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD----FE-----------------GSC 217 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~-----------------~~~ 217 (770)
..-..++|.+..++.+.+.+..+. -...+-++|.+|+||||+|+.+...+... +. ...
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVI 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEE
Confidence 344578999999999999886432 24567899999999999999999885321 11 011
Q ss_pred EEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEE
Q 041067 218 FLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRII 295 (770)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Ii 295 (770)
++... ... +... .+++...+... -..+++-++|+|+++.. ...+.++..+....+.+.+|
T Consensus 90 ~~~~~----~~~-~~~~-~~~l~~~~~~~------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lI 151 (355)
T TIGR02397 90 EIDAA----SNN-GVDD-IREILDNVKYA------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFI 151 (355)
T ss_pred Eeecc----ccC-CHHH-HHHHHHHHhcC------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEE
Confidence 11100 000 1111 11121111100 01234558889998765 45677777765555667777
Q ss_pred EEcCchh-hhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 296 ITTRNKQ-VLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 296 vTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
++|.+.+ +... ......+++.+++.++..+.+.
T Consensus 152 l~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~ 186 (355)
T TIGR02397 152 LATTEPHKIPATILSRCQRFDFKRIPLEDIVERLK 186 (355)
T ss_pred EEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHH
Confidence 7765544 3322 2234678899999998877775
No 95
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.99 E-value=0.00032 Score=69.90 Aligned_cols=161 Identities=18% Similarity=0.275 Sum_probs=88.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCCCC--ceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHC
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGDFE--GSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLS 261 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~ 261 (770)
....+.|||..|+|||.|.+++++.+....+ .++|+. .......+...+.. .....+++.++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-----------~~~f~~~~~~~~~~-----~~~~~~~~~~~ 96 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-----------AEEFIREFADALRD-----GEIEEFKDRLR 96 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-----------HHHHHHHHHHHHHT-----TSHHHHHHHHC
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-----------HHHHHHHHHHHHHc-----ccchhhhhhhh
Confidence 3456889999999999999999998765433 244543 22333444443332 22445566666
Q ss_pred CCcEEEEEeCCCChH---hHHH-HHhcccC-CCCCceEEEEcCch-h--------hhhhcCcceEEEeCccChHHHHHHH
Q 041067 262 RMKVLIVFDDVTCLS---QLQS-LIGSLYW-LTPVSRIIITTRNK-Q--------VLRNWGVRKIYEMKALEYHHAIELF 327 (770)
Q Consensus 262 ~kr~LlVLDdv~~~~---~~~~-l~~~~~~-~~~gs~IivTTR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~Lf 327 (770)
+- =+|++||++... .|+. +...+.. ...|.+||+|++.. . ....+...-++++++.++++..+++
T Consensus 97 ~~-DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il 175 (219)
T PF00308_consen 97 SA-DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRIL 175 (219)
T ss_dssp TS-SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHH
T ss_pred cC-CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHH
Confidence 43 367889996643 2332 2222211 23577899999543 2 2222334568999999999999988
Q ss_pred H-HhccCCCchhHHHHhhHhc--CCCHHHHHHHHHHH
Q 041067 328 I-MKYAQGVPLALKVLGCFLY--EREKEVWESAIDKL 361 (770)
Q Consensus 328 ~-~~~~~glPLal~~~g~~L~--~~~~~~w~~~l~~l 361 (770)
. .-.-.|+++.-.++--... .++..+-+.+++++
T Consensus 176 ~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 176 QKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp HHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 6 3333555554443333222 23555555555544
No 96
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.99 E-value=0.0001 Score=74.39 Aligned_cols=166 Identities=17% Similarity=0.226 Sum_probs=84.9
Q ss_pred ccchHHH-HHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHH
Q 041067 165 VGVESKV-EEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNL 243 (770)
Q Consensus 165 vGr~~~~-~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 243 (770)
.|..+.. ..+..+.. .....+.+.|+|..|+|||+||+.+++.....-....+++. .+ ....+
T Consensus 22 ~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~-~~----------~~~~~---- 85 (227)
T PRK08903 22 AGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA-AS----------PLLAF---- 85 (227)
T ss_pred cCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh-HH----------hHHHH----
Confidence 3554444 33444443 22334678999999999999999999986433233444441 11 10100
Q ss_pred hcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH--hHHHHHhcccCC-CCCc-eEEEEcCchhhhh--------hcCcce
Q 041067 244 LKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS--QLQSLIGSLYWL-TPVS-RIIITTRNKQVLR--------NWGVRK 311 (770)
Q Consensus 244 ~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~-~~gs-~IivTTR~~~v~~--------~~~~~~ 311 (770)
... ...-++|+||++... .-+.+...+... ..+. .+|+|++...... .+....
T Consensus 86 --------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~ 150 (227)
T PRK08903 86 --------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGL 150 (227)
T ss_pred --------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCe
Confidence 011 123478899997543 222333333211 2333 3666666432211 222246
Q ss_pred EEEeCccChHHHHHHHH-HhccCCCchhHHHHhhHhc--CCCHHHHHHHHHHH
Q 041067 312 IYEMKALEYHHAIELFI-MKYAQGVPLALKVLGCFLY--EREKEVWESAIDKL 361 (770)
Q Consensus 312 ~~~l~~L~~~ea~~Lf~-~~~~~glPLal~~~g~~L~--~~~~~~w~~~l~~l 361 (770)
.++++++++++-..++. ...-.|+++.=.++..... ..+..+-..+++.+
T Consensus 151 ~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 151 VYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 89999999987666554 1112344444333333222 22445555555544
No 97
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00031 Score=78.80 Aligned_cols=149 Identities=17% Similarity=0.209 Sum_probs=91.4
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC---------------------CCceEE
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD---------------------FEGSCF 218 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~~ 218 (770)
.-.+++|-+..++.+...+..+ .-...+.++|+.|+||||+|+.+++.+... |.....
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 3456999999999999988543 224557889999999999999999875321 111111
Q ss_pred EEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHH-HHCCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEE
Q 041067 219 LENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFR-RLSRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRII 295 (770)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Ii 295 (770)
+. . .... ++..+ ++++.. +.. -..+++-++|+|+++.. ...+.++..+......+.+|
T Consensus 93 id-a---as~~-gvd~i-r~ii~~-------------~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fI 153 (546)
T PRK14957 93 ID-A---ASRT-GVEET-KEILDN-------------IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFI 153 (546)
T ss_pred ee-c---cccc-CHHHH-HHHHHH-------------HHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEE
Confidence 11 0 0001 22211 111111 111 12356679999999754 45777887776655566666
Q ss_pred E-EcCchhhhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 296 I-TTRNKQVLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 296 v-TTR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+ ||....+... ......+++++++.++..+.+.
T Consensus 154 L~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~ 188 (546)
T PRK14957 154 LATTDYHKIPVTILSRCIQLHLKHISQADIKDQLK 188 (546)
T ss_pred EEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHH
Confidence 4 5544444422 2335789999999999876665
No 98
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.97 E-value=1.8e-05 Score=79.92 Aligned_cols=88 Identities=18% Similarity=0.115 Sum_probs=58.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhC-CCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCC-c---------chH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISG-DFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNV-M---------PFI 253 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~-~---------~~~ 253 (770)
-..++|.|.+|+|||||++.+|+.+.. +|+..+|+..+.+.. . ++..+++.+...+.....+ . ...
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~--~-ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERP--E-EVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCC--c-cHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 346899999999999999999998643 799999998554431 2 6777777773322111111 1 122
Q ss_pred HHHHHH-HCCCcEEEEEeCCCCh
Q 041067 254 DLIFRR-LSRMKVLIVFDDVTCL 275 (770)
Q Consensus 254 ~~l~~~-L~~kr~LlVLDdv~~~ 275 (770)
...+.. -+++++++++|++...
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHh
Confidence 222222 2479999999999653
No 99
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.96 E-value=6.4e-06 Score=63.82 Aligned_cols=57 Identities=30% Similarity=0.349 Sum_probs=28.1
Q ss_pred CccEEeccCcCccccCc-ccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecC
Q 041067 653 NISWLFLRETAIEELPS-SIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGC 709 (770)
Q Consensus 653 ~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~ 709 (770)
+|++|++++|.+..+|. .+..+++|++|++++|.....-|..+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45555555555555553 3445555555555554432222234455555555555544
No 100
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.96 E-value=7e-07 Score=98.67 Aligned_cols=238 Identities=20% Similarity=0.212 Sum_probs=160.5
Q ss_pred CCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCC-CCCcccccccccCCCCccccccccccCcCC
Q 041067 503 KMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPS-NLSAEKLMLLEVPDSDIEQLWDCVKHYRKL 581 (770)
Q Consensus 503 ~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~-~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L 581 (770)
.+..+..+.+..|.+.. ....+. .+.+|.+|++.++.+..+.. .-.+.+|++|++++|.|..+. ++..+..|
T Consensus 70 ~l~~l~~l~l~~n~i~~----~~~~l~--~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L 142 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK----ILNHLS--KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLL 142 (414)
T ss_pred HhHhHHhhccchhhhhh----hhcccc--cccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccch
Confidence 45556666676666553 111122 34689999999999999988 556899999999999999884 45667779
Q ss_pred cEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCcc-CCCCCCCcEEEecCCCCCCccCCccc-cCccEEec
Q 041067 582 NQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSR-IFNLEFLTKLNLSGCSKLKRLPEISS-GNISWLFL 659 (770)
Q Consensus 582 ~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L~l 659 (770)
+.|+++++. +-.+..+..+..|+.+++++|. +..++.. ...+.+|+.+.+.+|. +..+..... ..+..+++
T Consensus 143 ~~L~l~~N~-----i~~~~~~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~~~~~~~l~~~~l 215 (414)
T KOG0531|consen 143 KELNLSGNL-----ISDISGLESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNS-IREIEGLDLLKKLVLLSL 215 (414)
T ss_pred hhheeccCc-----chhccCCccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCc-hhcccchHHHHHHHHhhc
Confidence 999999854 3344566678999999999998 4444442 4578889999999876 333332222 45556677
Q ss_pred cCcCccccCcccccCCC--CCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCc-
Q 041067 660 RETAIEELPSSIERLHR--LGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIE- 736 (770)
Q Consensus 660 ~~~~i~~lp~~i~~l~~--L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~- 736 (770)
..|.+..+- .+..+.. |+.+++.++.. ...+..+..+..+..|++.++.... + ..+...+.+..+....+.+.
T Consensus 216 ~~n~i~~~~-~l~~~~~~~L~~l~l~~n~i-~~~~~~~~~~~~l~~l~~~~n~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 291 (414)
T KOG0531|consen 216 LDNKISKLE-GLNELVMLHLRELYLSGNRI-SRSPEGLENLKNLPVLDLSSNRISN-L-EGLERLPKLSELWLNDNKLAL 291 (414)
T ss_pred ccccceecc-CcccchhHHHHHHhcccCcc-ccccccccccccccccchhhccccc-c-ccccccchHHHhccCcchhcc
Confidence 777777553 2333333 88899998874 4444567788889999988754322 1 12344555666666666654
Q ss_pred ---ccchh-hhCCCCCcEEecccCcc
Q 041067 737 ---RIPKS-ISQLLMLRYLLLSYSES 758 (770)
Q Consensus 737 ---~lp~~-l~~l~~L~~L~l~~c~~ 758 (770)
..... ....+.+..+.+.+++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 292 SEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred hhhhhccccccccccccccccccCcc
Confidence 11111 45677888888888873
No 101
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.95 E-value=0.00019 Score=69.76 Aligned_cols=144 Identities=17% Similarity=0.230 Sum_probs=75.1
Q ss_pred CCCCCCcccchHHHHHHHHhhc---CCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHH
Q 041067 158 RDNKNKLVGVESKVEEIESILG---VESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSC 234 (770)
Q Consensus 158 ~~~~~~~vGr~~~~~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 234 (770)
|..-++|||.+..++.+.-++. ...+....+-.||++|+||||||..+++.....|. +.. .. ... ....
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s-g~-~i~---k~~d 91 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS-GP-AIE---KAGD 91 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE-CC-C-----SCHH
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc-ch-hhh---hHHH
Confidence 3455789999999998766654 23345778999999999999999999998776653 222 10 111 1111
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH--hHHHHHhcccC--------CCCCc-----------e
Q 041067 235 LQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS--QLQSLIGSLYW--------LTPVS-----------R 293 (770)
Q Consensus 235 l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~--------~~~gs-----------~ 293 (770)
+.. ++. .++ ++-+|.+|.+.... +-+.+.+.... .++++ -
T Consensus 92 l~~-il~-----------------~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 92 LAA-ILT-----------------NLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp HHH-HHH-----------------T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred HHH-HHH-----------------hcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 111 111 122 34567779997643 34445444321 12222 2
Q ss_pred EEEEcCchhhhhhcC--cceEEEeCccChHHHHHHHH
Q 041067 294 IIITTRNKQVLRNWG--VRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 294 IivTTR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~ 328 (770)
|=-|||...+..-+. ..-+.+++..+.+|-.+...
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~ 189 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVK 189 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHH
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHH
Confidence 335888764433222 12456888999999888875
No 102
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.95 E-value=0.0002 Score=84.76 Aligned_cols=166 Identities=13% Similarity=0.168 Sum_probs=93.2
Q ss_pred HHHhHhhhhhccccccccCCCCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC------
Q 041067 139 FINEVGNDILKRLDEVFRPRDNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD------ 212 (770)
Q Consensus 139 ~i~~i~~~i~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------ 212 (770)
.+++...++..+..+ ..-+.++||+++++++...|.... ..-+.++|.+|+|||++|+.++.++...
T Consensus 164 ~l~~~~~~l~~~~r~-----~~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l 236 (731)
T TIGR02639 164 ALEKYTVDLTEKAKN-----GKIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENL 236 (731)
T ss_pred HHHHHhhhHHHHHhc-----CCCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhh
Confidence 455555555444432 334579999999999999886432 3346799999999999999999986432
Q ss_pred CCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH-CCCcEEEEEeCCCCh-----------HhHHH
Q 041067 213 FEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRL-SRMKVLIVFDDVTCL-----------SQLQS 280 (770)
Q Consensus 213 f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~-----------~~~~~ 280 (770)
....+|..+. ..+... ..-.......+..+.+.+ +.++.+|++|+++.. +.-+.
T Consensus 237 ~~~~~~~~~~----------~~l~a~----~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~ 302 (731)
T TIGR02639 237 KNAKIYSLDM----------GSLLAG----TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNL 302 (731)
T ss_pred cCCeEEEecH----------HHHhhh----ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHH
Confidence 1344454321 111110 000000111222223333 245789999998632 11233
Q ss_pred HHhcccCCCCC-ceEEEEcCchhhhhh-------cCcceEEEeCccChHHHHHHHH
Q 041067 281 LIGSLYWLTPV-SRIIITTRNKQVLRN-------WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 281 l~~~~~~~~~g-s~IivTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+.+.+ ..| -++|-+|...+.... ......++++.++.++..+++.
T Consensus 303 L~~~l---~~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~ 355 (731)
T TIGR02639 303 LKPAL---SSGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILK 355 (731)
T ss_pred HHHHH---hCCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHH
Confidence 44443 233 244444443221111 1123578999999999999987
No 103
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=7.4e-06 Score=58.29 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=32.2
Q ss_pred CCCcEEEccCCCCcccchhhhCCCCCcEEecccCccCCcCCCCC
Q 041067 723 SSPIILNLAKTNIERIPKSISQLLMLRYLLLSYSESLQSSPKPP 766 (770)
Q Consensus 723 ~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~L~~lP~lp 766 (770)
++|++|++++|+++.+|..+++|++|+.|++++|+ ++++|.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~l~ 43 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISPLS 43 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGGGT
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcCCC
Confidence 46788888888888888778888888888888885 77777653
No 104
>PF14516 AAA_35: AAA-like domain
Probab=97.94 E-value=0.0025 Score=67.92 Aligned_cols=189 Identities=11% Similarity=0.172 Sum_probs=112.4
Q ss_pred CCCCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhc-cCCCHHHH
Q 041067 157 PRDNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQ-RSGGLSCL 235 (770)
Q Consensus 157 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~l 235 (770)
.+.+.+.+|.|...-+++.+.+.... ..+.|.|+-.+|||+|...+.+.....=-.+++++ +..... ...+....
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~~G---~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQPG---SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhcCC---CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHH
Confidence 34566778899966666666665322 37899999999999999999988765422333443 444322 12245545
Q ss_pred HHHHHHHHhcCCC---------------CcchHHHHHHHH-C--CCcEEEEEeCCCChHh----HHHHHhccc-CCC---
Q 041067 236 QQKLLSNLLKHKN---------------VMPFIDLIFRRL-S--RMKVLIVFDDVTCLSQ----LQSLIGSLY-WLT--- 289 (770)
Q Consensus 236 ~~~ll~~~~~~~~---------------~~~~~~~l~~~L-~--~kr~LlVLDdv~~~~~----~~~l~~~~~-~~~--- 289 (770)
.+.+...+...-. .......+.+.+ . +++.+|++|+|+..-. .+.+++.++ |..
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 5444444322110 012333344433 2 6889999999975432 233333321 101
Q ss_pred ----CCc--eEEEEcCchhhhhh-----cCcceEEEeCccChHHHHHHHH--------------HhccCCCchhHHHHhh
Q 041067 290 ----PVS--RIIITTRNKQVLRN-----WGVRKIYEMKALEYHHAIELFI--------------MKYAQGVPLALKVLGC 344 (770)
Q Consensus 290 ----~gs--~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~--------------~~~~~glPLal~~~g~ 344 (770)
..+ -|++-+........ ......+++++++.+|...|.. .+.+||+|.-+..++.
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~~~~~~~l~~~tgGhP~Lv~~~~~ 241 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFSQEQLEQLMDWTGGHPYLVQKACY 241 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCCHHHHHHHHHHHCCCHHHHHHHHH
Confidence 111 22222221111111 1234578999999999999987 8889999999999998
Q ss_pred HhcCC
Q 041067 345 FLYER 349 (770)
Q Consensus 345 ~L~~~ 349 (770)
.+...
T Consensus 242 ~l~~~ 246 (331)
T PF14516_consen 242 LLVEE 246 (331)
T ss_pred HHHHc
Confidence 88654
No 105
>PRK09087 hypothetical protein; Validated
Probab=97.93 E-value=9.6e-05 Score=73.97 Aligned_cols=107 Identities=14% Similarity=0.152 Sum_probs=66.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCc
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMK 264 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr 264 (770)
.+.+.|||..|+|||+|++.++.... ..|+.. ..+...+...+. +
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~-----------~~~~~~~~~~~~-----------------~-- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP-----------NEIGSDAANAAA-----------------E-- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH-----------HHcchHHHHhhh-----------------c--
Confidence 35689999999999999999887632 235431 111111211111 1
Q ss_pred EEEEEeCCCCh----HhHHHHHhcccCCCCCceEEEEcCc---------hhhhhhcCcceEEEeCccChHHHHHHHH
Q 041067 265 VLIVFDDVTCL----SQLQSLIGSLYWLTPVSRIIITTRN---------KQVLRNWGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 265 ~LlVLDdv~~~----~~~~~l~~~~~~~~~gs~IivTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
-+|++||++.. +.+-.+..... ..|..||+|++. ++....+....+++++++++++-.+++.
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 27888999543 22323332222 346779998873 2333444556899999999999999986
No 106
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00059 Score=76.71 Aligned_cols=159 Identities=18% Similarity=0.116 Sum_probs=88.7
Q ss_pred CCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHH
Q 041067 159 DNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQK 238 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (770)
..-..++|.+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+++.+...- |.. .. .+ +-....+.
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~-~~-~C----g~C~sCr~ 81 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD-GD-CC----NSCSVCES 81 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC-CC-CC----cccHHHHH
Confidence 344579999999999999885432 245688999999999999999998853210 100 00 00 00000011
Q ss_pred HHHH-------HhcCC-CCcchHHHHHHH-----HCCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEc-Cchh
Q 041067 239 LLSN-------LLKHK-NVMPFIDLIFRR-----LSRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITT-RNKQ 302 (770)
Q Consensus 239 ll~~-------~~~~~-~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTT-R~~~ 302 (770)
+... +.... ...+.+..+.+. ..+++=++|+|+++.. ..++.++..+....+...+|++| ....
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~K 161 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQK 161 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHh
Confidence 0000 00000 000111111111 1123346999999763 45677777665545566665554 4434
Q ss_pred hhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 303 VLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 303 v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+... ......+++.+++.++....+.
T Consensus 162 Ll~TI~SRcq~ieF~~Ls~~eL~~~L~ 188 (605)
T PRK05896 162 IPLTIISRCQRYNFKKLNNSELQELLK 188 (605)
T ss_pred hhHHHHhhhhhcccCCCCHHHHHHHHH
Confidence 4322 2334689999999999887775
No 107
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.87 E-value=0.0002 Score=73.78 Aligned_cols=148 Identities=16% Similarity=0.153 Sum_probs=77.9
Q ss_pred CcccchHHHHHHHHhhcC-------------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC--CCceEEEEecchhhc
Q 041067 163 KLVGVESKVEEIESILGV-------------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGD--FEGSCFLENVREESQ 227 (770)
Q Consensus 163 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~ 227 (770)
.++|.+..+++|.+.... .......+.++|++|+||||+|+.+++.+... .....++. +
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~----- 80 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-V----- 80 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-e-----
Confidence 377877777666543221 12235678899999999999999999875321 11112222 1
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHC-CCcEEEEEeCCCCh----------HhHHHHHhcccCCCCCceEEE
Q 041067 228 RSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLS-RMKVLIVFDDVTCL----------SQLQSLIGSLYWLTPVSRIII 296 (770)
Q Consensus 228 ~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~-~kr~LlVLDdv~~~----------~~~~~l~~~~~~~~~gs~Iiv 296 (770)
....+.. ...+ +....+++.++ ...-+|++|+++.. +..+.+............+|+
T Consensus 81 ---~~~~l~~----~~~g-----~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vil 148 (261)
T TIGR02881 81 ---ERADLVG----EYIG-----HTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLIL 148 (261)
T ss_pred ---cHHHhhh----hhcc-----chHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEe
Confidence 0111111 1110 00111222221 12348899999752 245555555444333345555
Q ss_pred EcCchhhhh------h--cCcceEEEeCccChHHHHHHHH
Q 041067 297 TTRNKQVLR------N--WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 297 TTR~~~v~~------~--~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
++...+... . -.....+.++.++.+|..+++.
T Consensus 149 a~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~ 188 (261)
T TIGR02881 149 AGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAE 188 (261)
T ss_pred cCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHH
Confidence 554332211 0 0123568899999998888875
No 108
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.0014 Score=72.70 Aligned_cols=151 Identities=19% Similarity=0.222 Sum_probs=87.8
Q ss_pred CCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC----CC-----------------ceE
Q 041067 159 DNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD----FE-----------------GSC 217 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~-----------------~~~ 217 (770)
..-+++||.+.....+...+..+. -...+.++|++|+||||+|+.+++.+... +. ...
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~ 89 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI 89 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE
Confidence 344579999988888888875332 23567899999999999999999875321 00 111
Q ss_pred EEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEE
Q 041067 218 FLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRII 295 (770)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Ii 295 (770)
.+. ..... ++..+. ++...... .-..+++-++|+|+++.. +..+.++..+........+|
T Consensus 90 el~----aa~~~-gid~iR-~i~~~~~~------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~I 151 (472)
T PRK14962 90 ELD----AASNR-GIDEIR-KIRDAVGY------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFV 151 (472)
T ss_pred EEe----CcccC-CHHHHH-HHHHHHhh------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEE
Confidence 111 00011 222211 11111100 012245679999999765 34666776665444445544
Q ss_pred EEcCc-hhhhhhc-CcceEEEeCccChHHHHHHHH
Q 041067 296 ITTRN-KQVLRNW-GVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 296 vTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
++|.+ ..+.... .....+++.+++.++....+.
T Consensus 152 lattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~ 186 (472)
T PRK14962 152 LATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQ 186 (472)
T ss_pred EEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHH
Confidence 44433 3343322 234689999999999777765
No 109
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=0.00042 Score=77.19 Aligned_cols=155 Identities=19% Similarity=0.281 Sum_probs=93.2
Q ss_pred CCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCC-------ceEEEEe----------
Q 041067 159 DNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFE-------GSCFLEN---------- 221 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-------~~~~~~~---------- 221 (770)
..-.+++|-+..+..+...+..+. -...+.++|..|+||||+|+.+++.+-..-. ..|..+.
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h 96 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNH 96 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCC
Confidence 344578999999999988775432 2457889999999999999999987532110 0111110
Q ss_pred --cch--hhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEE
Q 041067 222 --VRE--ESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRII 295 (770)
Q Consensus 222 --~~~--~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Ii 295 (770)
+.+ ..... ++..+.. ++.... ..-..+++-++|+|+++.. ..++.++..+....+.+.+|
T Consensus 97 ~Dv~eidaas~~-~vd~Ir~-iie~a~------------~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI 162 (507)
T PRK06645 97 PDIIEIDAASKT-SVDDIRR-IIESAE------------YKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFI 162 (507)
T ss_pred CcEEEeeccCCC-CHHHHHH-HHHHHH------------hccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEE
Confidence 000 00000 1111111 111100 0012356678999999874 45888887776555666665
Q ss_pred -EEcCchhhhhhc-CcceEEEeCccChHHHHHHHH
Q 041067 296 -ITTRNKQVLRNW-GVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 296 -vTTR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+||+...+.... .....+++.+++.++....+.
T Consensus 163 ~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~ 197 (507)
T PRK06645 163 FATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLE 197 (507)
T ss_pred EEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHH
Confidence 455555554433 234689999999999988886
No 110
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00092 Score=76.02 Aligned_cols=151 Identities=17% Similarity=0.251 Sum_probs=88.4
Q ss_pred CCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCC---------------------ceE
Q 041067 159 DNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFE---------------------GSC 217 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---------------------~~~ 217 (770)
..-.++||.+..+..|..++..+. -...+.++|..|+||||+|+.+++.+-..-. ..+
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceE
Confidence 344579999999999999986432 2456899999999999999999987432110 001
Q ss_pred EEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH--hHHHHHhcccCCCCCceEE
Q 041067 218 FLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS--QLQSLIGSLYWLTPVSRII 295 (770)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~Ii 295 (770)
.+.. .... ++..+ +.++.... ..-..+++-++|+|+++... ..+.++..+.......++|
T Consensus 92 Eida----As~~-gVd~I-Relle~a~------------~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fI 153 (709)
T PRK08691 92 EIDA----ASNT-GIDNI-REVLENAQ------------YAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (709)
T ss_pred EEec----cccC-CHHHH-HHHHHHHH------------hhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEE
Confidence 1100 0000 11111 11111000 00012456789999998654 3566666665444566677
Q ss_pred EEcCchh-hhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 296 ITTRNKQ-VLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 296 vTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
++|.+.. +... .+....+.+..++.++....+.
T Consensus 154 LaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~ 188 (709)
T PRK08691 154 LATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLA 188 (709)
T ss_pred EEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHH
Confidence 6665442 3222 2234568888999998877775
No 111
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=2.1e-07 Score=91.77 Aligned_cols=177 Identities=18% Similarity=0.113 Sum_probs=121.9
Q ss_pred cCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc----cCc
Q 041067 579 RKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS----GNI 654 (770)
Q Consensus 579 ~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~----~~L 654 (770)
..|++|||+....-...+. ..+..+.+|+.|.|.++..-..+...|..=..|+.|+|+.|+.+++...... +.|
T Consensus 185 sRlq~lDLS~s~it~stl~--~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLH--GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchhheeHHHHH--HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 3688999987542111111 1245678899999999987666766777788899999999998776643322 678
Q ss_pred cEEeccCcCccc--cCccccc-CCCCCEEeccCCCCC---CCCCcccCCCCCCcEEEeecCCCCcc-cCcccCCCCCCcE
Q 041067 655 SWLFLRETAIEE--LPSSIER-LHRLGYLDLLDCKRL---KSLPRSLWMLKSLGVLNLSGCSNLQR-LPECLAQFSSPII 727 (770)
Q Consensus 655 ~~L~l~~~~i~~--lp~~i~~-l~~L~~L~L~~~~~~---~~lp~~l~~l~~L~~L~l~~~~~~~~-lp~~l~~l~~L~~ 727 (770)
..|+++.+.+.. +...+.+ -++|..|+|+||... .++..-...+++|.+|+|+.|..+.. .-..+-.++.|++
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 889998876551 1111222 257889999988531 12222346789999999999876643 3345678899999
Q ss_pred EEccCCCCc--ccchhhhCCCCCcEEecccCc
Q 041067 728 LNLAKTNIE--RIPKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 728 L~L~~~~l~--~lp~~l~~l~~L~~L~l~~c~ 757 (770)
|.++.|..- +---.+...|+|.+|++.+|-
T Consensus 343 lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 343 LSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 999998743 111135778999999999885
No 112
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.0012 Score=73.04 Aligned_cols=151 Identities=19% Similarity=0.250 Sum_probs=92.2
Q ss_pred CCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC---------------------CCceE
Q 041067 159 DNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD---------------------FEGSC 217 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~ 217 (770)
..-.++||-+..++.+...+..+. -...+-++|+.|+||||+|+.++..+-.. +....
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 344579999999999988886432 24578899999999999999998764211 11112
Q ss_pred EEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEE
Q 041067 218 FLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRII 295 (770)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Ii 295 (770)
.+.. .... ++..+. +++...... -..+++-++|+|+++.. +..+.++..+....+..++|
T Consensus 89 eida----as~~-~vddIR-~Iie~~~~~------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 89 EIDA----ASNT-SVDDIK-VILENSCYL------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEec----ccCC-CHHHHH-HHHHHHHhc------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 2221 1111 222221 111111000 01245568999999764 34777777776666777766
Q ss_pred EEcC-chhhhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 296 ITTR-NKQVLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 296 vTTR-~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
++|. ...+... ......+++..++.++..+.+.
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~ 185 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLV 185 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHH
Confidence 6554 3444433 2335789999999998877775
No 113
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00016 Score=82.35 Aligned_cols=151 Identities=17% Similarity=0.227 Sum_probs=92.0
Q ss_pred CCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC---------------------CceE
Q 041067 159 DNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDF---------------------EGSC 217 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~ 217 (770)
..-.++||-+..++.|...+..+. -...+.++|..|+||||+|+.+++.+-... ...+
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~i 91 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLI 91 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCce
Confidence 344579999999999999886442 234568999999999999999998753211 0011
Q ss_pred EEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEE
Q 041067 218 FLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRII 295 (770)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Ii 295 (770)
.+.. .... ++..+ +++...+. ..-..+++-++|+|+++.. ...+.++..+.......++|
T Consensus 92 eida----as~~-~Vddi-R~li~~~~------------~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FI 153 (647)
T PRK07994 92 EIDA----ASRT-KVEDT-RELLDNVQ------------YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFL 153 (647)
T ss_pred eecc----cccC-CHHHH-HHHHHHHH------------hhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEE
Confidence 1110 0000 11111 11111110 0012356679999999764 35777877776655666666
Q ss_pred EEcCc-hhhhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 296 ITTRN-KQVLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 296 vTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
++|.+ ..+... ......|.+++++.++..+.+.
T Consensus 154 L~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~ 188 (647)
T PRK07994 154 LATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLE 188 (647)
T ss_pred EecCCccccchHHHhhheEeeCCCCCHHHHHHHHH
Confidence 55544 444322 2335789999999999988775
No 114
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00015 Score=79.13 Aligned_cols=160 Identities=14% Similarity=0.131 Sum_probs=91.0
Q ss_pred CCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCC---ceEEEEecchhhccCCCHHHH
Q 041067 159 DNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFE---GSCFLENVREESQRSGGLSCL 235 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~l 235 (770)
..-.++||-+..+..|..++..+. -...+.++|..|+||||+|+.+++.+...-. ..|..+. ....+
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~---------sC~~i 84 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT---------SCLEI 84 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc---------HHHHH
Confidence 344579999999999999886433 2345789999999999999999987543211 0111110 00000
Q ss_pred HHHHHHHH---hcC-CCCcchHHHHHHH-----HCCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEE-EcCchhh
Q 041067 236 QQKLLSNL---LKH-KNVMPFIDLIFRR-----LSRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIII-TTRNKQV 303 (770)
Q Consensus 236 ~~~ll~~~---~~~-~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Iiv-TTR~~~v 303 (770)
.......+ ... ....+.+..+.+. ..++.-++|+|+++.. +.++.++..+........+|. ||....+
T Consensus 85 ~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI 164 (484)
T PRK14956 85 TKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKI 164 (484)
T ss_pred HccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhc
Confidence 00000000 000 0000111112111 2356679999999864 458888777755444555554 4444444
Q ss_pred hhh-cCcceEEEeCccChHHHHHHHH
Q 041067 304 LRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 304 ~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
... ......|.+.+++.++..+.+.
T Consensus 165 ~~TI~SRCq~~~f~~ls~~~i~~~L~ 190 (484)
T PRK14956 165 PETILSRCQDFIFKKVPLSVLQDYSE 190 (484)
T ss_pred cHHHHhhhheeeecCCCHHHHHHHHH
Confidence 333 2334689999999988877775
No 115
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.0022 Score=72.99 Aligned_cols=159 Identities=15% Similarity=0.188 Sum_probs=89.7
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC--C--CceEEEEecchhhccCCCHHHH
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD--F--EGSCFLENVREESQRSGGLSCL 235 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f--~~~~~~~~~~~~~~~~~~~~~l 235 (770)
.-+++||-+..+..|.+++..+. -...+-++|..|+||||+|+.+++.+-.. . ..... ..- +.-..
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~--------~pC-g~C~~ 83 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA--------TPC-GVCQA 83 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC--------CCC-CccHH
Confidence 44578999999999999886442 34567899999999999999998874310 0 00000 000 00000
Q ss_pred HHHHHHH----Hhc-CCCCcchHHHHHHHH--------CCCcEEEEEeCCCChH--hHHHHHhcccCCCCCceEEEEc-C
Q 041067 236 QQKLLSN----LLK-HKNVMPFIDLIFRRL--------SRMKVLIVFDDVTCLS--QLQSLIGSLYWLTPVSRIIITT-R 299 (770)
Q Consensus 236 ~~~ll~~----~~~-~~~~~~~~~~l~~~L--------~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTT-R 299 (770)
.+.+... +.. ........+.+++.+ .++.-++|+|+|+... .++.++..+.......++|++| .
T Consensus 84 C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd 163 (618)
T PRK14951 84 CRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD 163 (618)
T ss_pred HHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC
Confidence 1111000 000 000001112222221 2344588999998643 5777777766555566666554 4
Q ss_pred chhhhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 300 NKQVLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 300 ~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
...+... ......++++.++.++..+.+.
T Consensus 164 ~~kil~TIlSRc~~~~f~~Ls~eei~~~L~ 193 (618)
T PRK14951 164 PQKVPVTVLSRCLQFNLRPMAPETVLEHLT 193 (618)
T ss_pred chhhhHHHHHhceeeecCCCCHHHHHHHHH
Confidence 4444432 2335789999999998877775
No 116
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.81 E-value=5.7e-05 Score=80.03 Aligned_cols=88 Identities=18% Similarity=0.137 Sum_probs=59.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhC-CCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCc----------chHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISG-DFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVM----------PFID 254 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~----------~~~~ 254 (770)
..++|+|.+|.|||||++.+++.+.. +|+..+|+..+.+.. . ++..+++.+...+....-+. ...+
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~--~-EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERP--E-EVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCC--c-cHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 36899999999999999999998755 499999998654431 2 67778888754432211111 1112
Q ss_pred HHHHH-HCCCcEEEEEeCCCChH
Q 041067 255 LIFRR-LSRMKVLIVFDDVTCLS 276 (770)
Q Consensus 255 ~l~~~-L~~kr~LlVLDdv~~~~ 276 (770)
..++. -++++++|++|.+....
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHHH
Confidence 22222 25899999999996543
No 117
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.81 E-value=0.0008 Score=74.69 Aligned_cols=165 Identities=16% Similarity=0.279 Sum_probs=93.7
Q ss_pred CCCCCcccchHHHHHHHHhhcC-----------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC-----CceEEEEec
Q 041067 159 DNKNKLVGVESKVEEIESILGV-----------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDF-----EGSCFLENV 222 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~~~~~~ 222 (770)
..-..+.|.++.++++.+.+.. +-...+-+.++|++|+|||++|+++++.+...+ ....|+. +
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v 257 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-I 257 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-c
Confidence 3445688999999999887642 112355689999999999999999999876542 2234443 2
Q ss_pred chhh--ccC-CCHHHHHHHHHHHHhcCCCCcchHHHHHHH-HCCCcEEEEEeCCCChH---------h-----HHHHHhc
Q 041067 223 REES--QRS-GGLSCLQQKLLSNLLKHKNVMPFIDLIFRR-LSRMKVLIVFDDVTCLS---------Q-----LQSLIGS 284 (770)
Q Consensus 223 ~~~~--~~~-~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~---------~-----~~~l~~~ 284 (770)
.... ... .......+. .....++. -.+++++|+||+++..- + +..++..
T Consensus 258 ~~~eLl~kyvGete~~ir~-------------iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 258 KGPELLNKYVGETERQIRL-------------IFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred cchhhcccccchHHHHHHH-------------HHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 2110 000 000000011 11111221 13578999999997431 1 2234433
Q ss_pred ccCCC--CCceEEEEcCchhhhhh-----cCcceEEEeCccChHHHHHHHHHhccCCCch
Q 041067 285 LYWLT--PVSRIIITTRNKQVLRN-----WGVRKIYEMKALEYHHAIELFIMKYAQGVPL 337 (770)
Q Consensus 285 ~~~~~--~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~glPL 337 (770)
+.... .+..||.||-..+.... ...+..++++..+.++..++|....-..+|+
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l 384 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL 384 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc
Confidence 33222 34445556654443221 1335679999999999999997443445666
No 118
>PRK12377 putative replication protein; Provisional
Probab=97.81 E-value=0.00051 Score=69.38 Aligned_cols=100 Identities=14% Similarity=0.105 Sum_probs=55.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCc
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMK 264 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr 264 (770)
...+.++|.+|+|||+||.++++.+......+.|+. ...+...+-...... .....+.+.+ .+-
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~-----------~~~l~~~l~~~~~~~----~~~~~~l~~l-~~~ 164 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT-----------VPDVMSRLHESYDNG----QSGEKFLQEL-CKV 164 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE-----------HHHHHHHHHHHHhcc----chHHHHHHHh-cCC
Confidence 357899999999999999999999776655556664 223333333222111 0111222333 345
Q ss_pred EEEEEeCCCCh--HhH--HHHHhccc-CCCCCceEEEEcCc
Q 041067 265 VLIVFDDVTCL--SQL--QSLIGSLY-WLTPVSRIIITTRN 300 (770)
Q Consensus 265 ~LlVLDdv~~~--~~~--~~l~~~~~-~~~~gs~IivTTR~ 300 (770)
=||||||+... ..| +.+...+. .....--+||||--
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 68999999332 222 23333321 12233346777753
No 119
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.81 E-value=0.0011 Score=66.75 Aligned_cols=101 Identities=15% Similarity=0.137 Sum_probs=56.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCc
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMK 264 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr 264 (770)
...+.++|.+|+|||+||.++++.+...-..++++. +..+...+-..... .......+.+.+. +.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it-----------~~~l~~~l~~~~~~---~~~~~~~~l~~l~-~~ 163 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT-----------VADIMSAMKDTFSN---SETSEEQLLNDLS-NV 163 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-----------HHHHHHHHHHHHhh---ccccHHHHHHHhc-cC
Confidence 457899999999999999999998766544555553 22333333222211 1111223444455 34
Q ss_pred EEEEEeCCCCh--HhHHH--HHhccc-CCCCCceEEEEcCc
Q 041067 265 VLIVFDDVTCL--SQLQS--LIGSLY-WLTPVSRIIITTRN 300 (770)
Q Consensus 265 ~LlVLDdv~~~--~~~~~--l~~~~~-~~~~gs~IivTTR~ 300 (770)
=+||+||+... ..|+. +...+. .....-.+||||--
T Consensus 164 dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 47888999543 23442 222221 12233457777753
No 120
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.81 E-value=0.00039 Score=82.94 Aligned_cols=166 Identities=13% Similarity=0.157 Sum_probs=94.0
Q ss_pred HHHhHhhhhhccccccccCCCCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC------
Q 041067 139 FINEVGNDILKRLDEVFRPRDNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD------ 212 (770)
Q Consensus 139 ~i~~i~~~i~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------ 212 (770)
.+++...++..+.++ ..-+.++||+.++.++...|.... ..-+.++|.+|+||||+|+.+++++...
T Consensus 169 ~l~~~~~~L~~~~r~-----~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l 241 (852)
T TIGR03345 169 ALDQYTTDLTAQARE-----GKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPAL 241 (852)
T ss_pred hHHHHhhhHHHHhcC-----CCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccc
Confidence 455555555444332 344579999999999999886432 2346699999999999999999987433
Q ss_pred CCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH--CCCcEEEEEeCCCChH-------hHH---H
Q 041067 213 FEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRL--SRMKVLIVFDDVTCLS-------QLQ---S 280 (770)
Q Consensus 213 f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~~~~-------~~~---~ 280 (770)
....+|..+........ ... .++- ..+..+.+.+ .+.+++|++|+++... +-+ .
T Consensus 242 ~~~~i~~l~l~~l~ag~-~~~---ge~e----------~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~ 307 (852)
T TIGR03345 242 RNVRLLSLDLGLLQAGA-SVK---GEFE----------NRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANL 307 (852)
T ss_pred cCCeEEEeehhhhhccc-ccc---hHHH----------HHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHH
Confidence 12334433222211100 000 0000 1111111111 2468999999985531 111 2
Q ss_pred HHhcccCCCCC-ceEEEEcCchhhhhh-------cCcceEEEeCccChHHHHHHHH
Q 041067 281 LIGSLYWLTPV-SRIIITTRNKQVLRN-------WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 281 l~~~~~~~~~g-s~IivTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+.+.+ ..| -++|-+|...+..+. ......+.+++++.+++.+++.
T Consensus 308 Lkp~l---~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~ 360 (852)
T TIGR03345 308 LKPAL---ARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLR 360 (852)
T ss_pred hhHHh---hCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHH
Confidence 44443 233 455555554322111 1223689999999999999976
No 121
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00018 Score=78.71 Aligned_cols=165 Identities=16% Similarity=0.193 Sum_probs=91.6
Q ss_pred CCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC--CCceEEEEecchhhccCCCHHHHH
Q 041067 159 DNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD--FEGSCFLENVREESQRSGGLSCLQ 236 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~ 236 (770)
..-.+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+... ++...|...+.+.+ +.-...
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c----~~c~~c 87 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPC----GECESC 87 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCC----CCCHHH
Confidence 344579999999999998886432 23458899999999999999999886331 11111110000000 000000
Q ss_pred HHHHHH-------HhcCC-CCcchHHHHHHHH-----CCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEc-Cc
Q 041067 237 QKLLSN-------LLKHK-NVMPFIDLIFRRL-----SRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITT-RN 300 (770)
Q Consensus 237 ~~ll~~-------~~~~~-~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTT-R~ 300 (770)
+.+... +.... ...+.+..+.+.+ .+++-++|+|+++.. ..++.++..+....+.+.+|++| +.
T Consensus 88 ~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~ 167 (397)
T PRK14955 88 RDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTEL 167 (397)
T ss_pred HHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 111000 00000 0011122222333 245568899999764 45778887776666677766555 44
Q ss_pred hhhhhhc-CcceEEEeCccChHHHHHHHH
Q 041067 301 KQVLRNW-GVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 301 ~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
..+.... .....++++++++++..+.+.
T Consensus 168 ~kl~~tl~sR~~~v~f~~l~~~ei~~~l~ 196 (397)
T PRK14955 168 HKIPATIASRCQRFNFKRIPLEEIQQQLQ 196 (397)
T ss_pred HHhHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 4444322 123578899999888876664
No 122
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.78 E-value=0.00041 Score=75.56 Aligned_cols=148 Identities=20% Similarity=0.279 Sum_probs=96.3
Q ss_pred HHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCC
Q 041067 169 SKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKN 248 (770)
Q Consensus 169 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~ 248 (770)
.-+.++.+.+.... .++.|.|+-++||||+++.+.....+. .+++.......... .+. +.+
T Consensus 24 ~~~~~l~~~~~~~~---~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~-~l~----d~~-------- 84 (398)
T COG1373 24 KLLPRLIKKLDLRP---FIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRI-ELL----DLL-------- 84 (398)
T ss_pred hhhHHHHhhcccCC---cEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchh-hHH----HHH--------
Confidence 44445555553222 299999999999999997776665444 55554211111111 111 111
Q ss_pred CcchHHHHHHHHCCCcEEEEEeCCCChHhHHHHHhcccCCCCCceEEEEcCchhhhhh------cCcceEEEeCccChHH
Q 041067 249 VMPFIDLIFRRLSRMKVLIVFDDVTCLSQLQSLIGSLYWLTPVSRIIITTRNKQVLRN------WGVRKIYEMKALEYHH 322 (770)
Q Consensus 249 ~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~------~~~~~~~~l~~L~~~e 322 (770)
..+.+.-..++..|+||.|.....|+..+..+...++. +|+||+-+...... .|....+++-||+..|
T Consensus 85 -----~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~E 158 (398)
T COG1373 85 -----RAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFRE 158 (398)
T ss_pred -----HHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHH
Confidence 11111111278999999999999999999988776666 89999887655432 2446789999999999
Q ss_pred HHH-------------HHH-HhccCCCchhHHH
Q 041067 323 AIE-------------LFI-MKYAQGVPLALKV 341 (770)
Q Consensus 323 a~~-------------Lf~-~~~~~glPLal~~ 341 (770)
-.. +|. .-..||.|-++..
T Consensus 159 fl~~~~~~~~~~~~~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 159 FLKLKGEEIEPSKLELLFEKYLETGGFPESVKA 191 (398)
T ss_pred HHhhcccccchhHHHHHHHHHHHhCCCcHHHhC
Confidence 865 343 6678999988754
No 123
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.75 E-value=0.00068 Score=71.89 Aligned_cols=185 Identities=18% Similarity=0.242 Sum_probs=115.2
Q ss_pred CCCCCcccchHHHHHHHHhhcC--CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCC--ceEEEEecchhhccCCCHHH
Q 041067 159 DNKNKLVGVESKVEEIESILGV--ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFE--GSCFLENVREESQRSGGLSC 234 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~ 234 (770)
..+..++||+.++..+.+++.. +.+..+-+-|.|-+|.|||.+...++.+...... .++++...+ . . ....
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~s-l---~-~~~a 221 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTS-L---T-EASA 221 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecc-c---c-chHH
Confidence 4466799999999999999863 3445678899999999999999999988654433 235554221 1 1 3344
Q ss_pred HHHHHHHHH----hcCCCCcchHHHHHHHHCCCc--EEEEEeCCCChHh--HHHHHhcccCC-CCCceEEEEcCchh---
Q 041067 235 LQQKLLSNL----LKHKNVMPFIDLIFRRLSRMK--VLIVFDDVTCLSQ--LQSLIGSLYWL-TPVSRIIITTRNKQ--- 302 (770)
Q Consensus 235 l~~~ll~~~----~~~~~~~~~~~~l~~~L~~kr--~LlVLDdv~~~~~--~~~l~~~~~~~-~~gs~IivTTR~~~--- 302 (770)
+..++...+ .......+....+.++..+.+ +|+|||.++.... -+.+...+.|. -+++|+|+.---..
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDl 301 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDL 301 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhH
Confidence 555565555 222223355677777776544 8999999876441 12222223332 26777765422111
Q ss_pred ---hhhhc-----CcceEEEeCccChHHHHHHHH-----HhccCCCchhHHHHhhHhcC
Q 041067 303 ---VLRNW-----GVRKIYEMKALEYHHAIELFI-----MKYAQGVPLALKVLGCFLYE 348 (770)
Q Consensus 303 ---v~~~~-----~~~~~~~l~~L~~~ea~~Lf~-----~~~~~glPLal~~~g~~L~~ 348 (770)
.+..+ -.......++-+.++-.+.+. +....-.|-|++..|+-..+
T Consensus 302 TdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa 360 (529)
T KOG2227|consen 302 TDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAA 360 (529)
T ss_pred HHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhcc
Confidence 11111 123578889999999999987 33444556667666655544
No 124
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.74 E-value=0.0014 Score=72.61 Aligned_cols=160 Identities=17% Similarity=0.192 Sum_probs=87.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCC-C-ceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCC
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDF-E-GSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSR 262 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~ 262 (770)
...+.|||.+|+|||+||+++++.+...+ + .+.|+. ...+...+...+... ....+++.++.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-----------~~~f~~~~~~~~~~~-----~~~~f~~~~~~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLNDLVDSMKEG-----KLNEFREKYRK 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHhcc-----cHHHHHHHHHh
Confidence 44599999999999999999999976654 3 334443 122333443333211 12334444444
Q ss_pred CcEEEEEeCCCCh---HhH-HHHHhcccC-CCCCceEEEEcC-chhhhh--------hcCcceEEEeCccChHHHHHHHH
Q 041067 263 MKVLIVFDDVTCL---SQL-QSLIGSLYW-LTPVSRIIITTR-NKQVLR--------NWGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 263 kr~LlVLDdv~~~---~~~-~~l~~~~~~-~~~gs~IivTTR-~~~v~~--------~~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+.-+|++||++.. ..+ +.+...+.. ...|..||+||. .+.-.. .+....++++++.+.+.-.+++.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 4558999999743 111 223222211 123457888874 332221 12334578999999999888876
Q ss_pred -HhccCCCchhHHHHhhHhcC---CCHHHHHHHHHHH
Q 041067 329 -MKYAQGVPLALKVLGCFLYE---REKEVWESAIDKL 361 (770)
Q Consensus 329 -~~~~~glPLal~~~g~~L~~---~~~~~w~~~l~~l 361 (770)
.....|+++.=.+ ..++.. .+..+-+.++.++
T Consensus 274 ~~~~~~~~~l~~ev-~~~Ia~~~~~~~R~L~g~l~~l 309 (440)
T PRK14088 274 KMLEIEHGELPEEV-LNFVAENVDDNLRRLRGAIIKL 309 (440)
T ss_pred HHHHhcCCCCCHHH-HHHHHhccccCHHHHHHHHHHH
Confidence 1112345444333 233332 2455555555544
No 125
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.74 E-value=0.0012 Score=73.16 Aligned_cols=129 Identities=16% Similarity=0.279 Sum_probs=76.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCC--CceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCC
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDF--EGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSR 262 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~ 262 (770)
...+.|+|..|+|||+|++++++.+.... ..++++. ...+...+...+.... ...+.+++.++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~~~~~l~~~~---~~~~~~~~~~~~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARKAVDILQKTH---KEIEQFKNEICQ 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHHhh---hHHHHHHHHhcc
Confidence 34589999999999999999999765432 2334443 2233444444332210 123344444443
Q ss_pred CcEEEEEeCCCChH---hH-HHHHhcccC-CCCCceEEEEcCch-h--------hhhhcCcceEEEeCccChHHHHHHHH
Q 041067 263 MKVLIVFDDVTCLS---QL-QSLIGSLYW-LTPVSRIIITTRNK-Q--------VLRNWGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 263 kr~LlVLDdv~~~~---~~-~~l~~~~~~-~~~gs~IivTTR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
.-+||+||+.... .+ +.+...+.. ...|..||+|+... . +...+...-++.+++++.++..+++.
T Consensus 207 -~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 207 -NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred -CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 3478889996532 22 333333321 23455788886532 2 22223345678899999999999986
No 126
>PRK08116 hypothetical protein; Validated
Probab=97.73 E-value=0.00017 Score=74.11 Aligned_cols=102 Identities=21% Similarity=0.231 Sum_probs=59.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcE
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKV 265 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~ 265 (770)
..+.++|.+|+|||.||.++++.+..+...++|+. ...+...+....... .......+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~--~~~~~~~~~~~l~~~d- 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSS--GKEDENEIIRSLVNAD- 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhcc--ccccHHHHHHHhcCCC-
Confidence 35889999999999999999999766544445553 223333433332211 1112233445555444
Q ss_pred EEEEeCCC--ChHhH--HHHHhccc-CCCCCceEEEEcCch
Q 041067 266 LIVFDDVT--CLSQL--QSLIGSLY-WLTPVSRIIITTRNK 301 (770)
Q Consensus 266 LlVLDdv~--~~~~~--~~l~~~~~-~~~~gs~IivTTR~~ 301 (770)
||||||+. ...+| +.+...+. ....|..+||||...
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999994 23333 22333322 124566799998743
No 127
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.73 E-value=0.0013 Score=71.46 Aligned_cols=151 Identities=17% Similarity=0.219 Sum_probs=87.6
Q ss_pred CCCCCcccchHHHHHHHHhhcC-----------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhc
Q 041067 159 DNKNKLVGVESKVEEIESILGV-----------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQ 227 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 227 (770)
..-.++.|.+..+++|.+.+.. +-...+-|.++|++|.|||++|+++++.....| +.+. ..
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f---i~i~-~s---- 213 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF---IRVV-GS---- 213 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe-hH----
Confidence 3345688999999998886641 112356799999999999999999998765433 1111 00
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH------------h----HHHHHhcccCC--C
Q 041067 228 RSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS------------Q----LQSLIGSLYWL--T 289 (770)
Q Consensus 228 ~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~------------~----~~~l~~~~~~~--~ 289 (770)
.+.... .++ ......+.+.......+.+|++|+++... . +..++..+..+ .
T Consensus 214 ------~l~~k~----~ge-~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 214 ------EFVQKY----LGE-GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred ------HHHHHh----cch-hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 111111 000 00011112222234578999999986421 1 22333333221 2
Q ss_pred CCceEEEEcCchhhhhh-----cCcceEEEeCccChHHHHHHHH
Q 041067 290 PVSRIIITTRNKQVLRN-----WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 290 ~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
.+..||.||...+.... ...+..++++..+.++..++|.
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~ 326 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQ 326 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHH
Confidence 35678888876544321 1335678999889888888886
No 128
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.72 E-value=0.00048 Score=67.16 Aligned_cols=127 Identities=16% Similarity=0.196 Sum_probs=74.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCC---------------------CCceEEEEecchhhccCCCHHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGD---------------------FEGSCFLENVREESQRSGGLSCLQQKLLSNL 243 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 243 (770)
...+.++|..|+||||+|+.+.+.+-.. +....++.... ... ++..+. ++...+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~~-~~~~i~-~i~~~~ 88 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QSI-KVDQVR-ELVEFL 88 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---CcC-CHHHHH-HHHHHH
Confidence 4678899999999999999999886431 11112221000 001 111111 111111
Q ss_pred hcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH--hHHHHHhcccCCCCCceEEEEcCch-hhhhhc-CcceEEEeCccC
Q 041067 244 LKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS--QLQSLIGSLYWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALE 319 (770)
Q Consensus 244 ~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~-~v~~~~-~~~~~~~l~~L~ 319 (770)
... -..+.+-++|+||++... ..+.++..+....+.+.+|++|++. .+.... .....+++.+++
T Consensus 89 ~~~------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~ 156 (188)
T TIGR00678 89 SRT------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLS 156 (188)
T ss_pred ccC------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCC
Confidence 100 012456689999997643 4677777776656677777777654 222221 224689999999
Q ss_pred hHHHHHHHH
Q 041067 320 YHHAIELFI 328 (770)
Q Consensus 320 ~~ea~~Lf~ 328 (770)
.++..+.+.
T Consensus 157 ~~~~~~~l~ 165 (188)
T TIGR00678 157 EEALLQWLI 165 (188)
T ss_pred HHHHHHHHH
Confidence 999887774
No 129
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.72 E-value=0.0011 Score=73.24 Aligned_cols=127 Identities=12% Similarity=0.143 Sum_probs=75.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCc
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMK 264 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr 264 (770)
...+.|+|..|+|||+||+++++.+......+.|+. ...+...+...+... ..+.+++.++. .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~~~~~~~l~~~-----~~~~f~~~~~~-~ 203 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELFTEHLVSAIRSG-----EMQRFRQFYRN-V 203 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHHHHHHHHHhcc-----hHHHHHHHccc-C
Confidence 346889999999999999999998765544455554 122233333333211 12334444433 3
Q ss_pred EEEEEeCCCChHh----HHHHHhcccC-CCCCceEEEEcCc-hh--------hhhhcCcceEEEeCccChHHHHHHHH
Q 041067 265 VLIVFDDVTCLSQ----LQSLIGSLYW-LTPVSRIIITTRN-KQ--------VLRNWGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 265 ~LlVLDdv~~~~~----~~~l~~~~~~-~~~gs~IivTTR~-~~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
-++++||+..... -+.+...+.. ...|..||+||.. +. +...+.....+++++++.++..+++.
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 4788899865321 2233322211 1245678888754 22 12223334689999999999988886
No 130
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.00016 Score=77.14 Aligned_cols=163 Identities=14% Similarity=0.122 Sum_probs=96.4
Q ss_pred CCCCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC----CCceEEEEecchhhccCCCH
Q 041067 157 PRDNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD----FEGSCFLENVREESQRSGGL 232 (770)
Q Consensus 157 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~ 232 (770)
.|.....++|-++..+.+...+..+. -...+.|+|..|+||||+|+.+++.+-.+ +....... .. +-
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~----~~----~~ 88 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD----PD----PA 88 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC----CC----CC
Confidence 34566789999999999999986442 34568899999999999999999986432 11110000 00 00
Q ss_pred HHHHHHHHHH-------Hh----cC----CCC--cchHHHHHHHHC-----CCcEEEEEeCCCChH--hHHHHHhcccCC
Q 041067 233 SCLQQKLLSN-------LL----KH----KNV--MPFIDLIFRRLS-----RMKVLIVFDDVTCLS--QLQSLIGSLYWL 288 (770)
Q Consensus 233 ~~l~~~ll~~-------~~----~~----~~~--~~~~~~l~~~L~-----~kr~LlVLDdv~~~~--~~~~l~~~~~~~ 288 (770)
....+.+... +. .+ ... .+.+..+.+.+. +++-++|+|+++... ..+.++..+...
T Consensus 89 c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp 168 (351)
T PRK09112 89 SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP 168 (351)
T ss_pred CHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC
Confidence 0111111110 00 00 001 123334444443 456789999998644 466777776554
Q ss_pred CCCceEEEEc-Cchhhhhhc-CcceEEEeCccChHHHHHHHH
Q 041067 289 TPVSRIIITT-RNKQVLRNW-GVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 289 ~~gs~IivTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
..+..+|++| +...+.... .....+.+.+++.++..+++.
T Consensus 169 p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~ 210 (351)
T PRK09112 169 PARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALS 210 (351)
T ss_pred CCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHH
Confidence 5555555544 443343332 224689999999999988875
No 131
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.71 E-value=0.0013 Score=72.57 Aligned_cols=181 Identities=14% Similarity=0.230 Sum_probs=94.7
Q ss_pred CCcccchHHHH--HHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCC--ceEEEEecchhhccCCCHHHHHH
Q 041067 162 NKLVGVESKVE--EIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFE--GSCFLENVREESQRSGGLSCLQQ 237 (770)
Q Consensus 162 ~~~vGr~~~~~--~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~ 237 (770)
..++|.+.... .+..+..........+.|+|..|+|||+||+++++.+..+.. .++|+. ...+..
T Consensus 111 ~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-----------~~~~~~ 179 (405)
T TIGR00362 111 NFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-----------SEKFTN 179 (405)
T ss_pred ccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-----------HHHHHH
Confidence 34567655432 222222222222346899999999999999999999766543 334443 122223
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH---hH-HHHHhcccC-CCCCceEEEEcCc-hhh--------
Q 041067 238 KLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS---QL-QSLIGSLYW-LTPVSRIIITTRN-KQV-------- 303 (770)
Q Consensus 238 ~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~~-~~l~~~~~~-~~~gs~IivTTR~-~~v-------- 303 (770)
.+...+... ....+.+.+++ .-+||+||++... .+ +.+...+.. ...|..+|+||.. ...
T Consensus 180 ~~~~~~~~~-----~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l 253 (405)
T TIGR00362 180 DFVNALRNN-----KMEEFKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERL 253 (405)
T ss_pred HHHHHHHcC-----CHHHHHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhh
Confidence 333333221 13334444443 2378899997532 11 233333221 1245568887753 221
Q ss_pred hhhcCcceEEEeCccChHHHHHHHH--HhccCCCchhHH---HHhhHhcCCCHHHHHHHHHHH
Q 041067 304 LRNWGVRKIYEMKALEYHHAIELFI--MKYAQGVPLALK---VLGCFLYEREKEVWESAIDKL 361 (770)
Q Consensus 304 ~~~~~~~~~~~l~~L~~~ea~~Lf~--~~~~~glPLal~---~~g~~L~~~~~~~w~~~l~~l 361 (770)
...+.....+.+++.+.++..+++. ++. .|+++.=. .++... ..+..+-+.++.++
T Consensus 254 ~SRl~~g~~v~i~~pd~~~r~~il~~~~~~-~~~~l~~e~l~~ia~~~-~~~~r~l~~~l~~l 314 (405)
T TIGR00362 254 RSRFEWGLVVDIEPPDLETRLAILQKKAEE-EGLELPDEVLEFIAKNI-RSNVRELEGALNRL 314 (405)
T ss_pred hhhccCCeEEEeCCCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHH
Confidence 1222334578999999999888886 222 24444322 233222 22445555555554
No 132
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.70 E-value=0.0013 Score=73.37 Aligned_cols=149 Identities=13% Similarity=0.198 Sum_probs=83.9
Q ss_pred CcccchHH--HHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCc--eEEEEecchhhccCCCHHHHHHH
Q 041067 163 KLVGVESK--VEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEG--SCFLENVREESQRSGGLSCLQQK 238 (770)
Q Consensus 163 ~~vGr~~~--~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~~~ 238 (770)
.++|.... ......+..........+.|+|.+|+|||+||+++++.+..+++. +.|+. ...+...
T Consensus 124 fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-----------~~~~~~~ 192 (450)
T PRK00149 124 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-----------SEKFTND 192 (450)
T ss_pred cccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHH
Confidence 45565443 222333332222234568999999999999999999998766532 33443 1222333
Q ss_pred HHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH----hHHHHHhcccC-CCCCceEEEEcCch-h--------hh
Q 041067 239 LLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS----QLQSLIGSLYW-LTPVSRIIITTRNK-Q--------VL 304 (770)
Q Consensus 239 ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IivTTR~~-~--------v~ 304 (770)
+...+... ....+.+.++. .-+||+||++... ..+.+...+.. ...|..||+||... . +.
T Consensus 193 ~~~~~~~~-----~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~ 266 (450)
T PRK00149 193 FVNALRNN-----TMEEFKEKYRS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLR 266 (450)
T ss_pred HHHHHHcC-----cHHHHHHHHhc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 33333211 12334445543 4478899996431 12233332211 12355688877643 1 12
Q ss_pred hhcCcceEEEeCccChHHHHHHHH
Q 041067 305 RNWGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 305 ~~~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
..+....++++++.+.++..+++.
T Consensus 267 SRl~~gl~v~i~~pd~~~r~~il~ 290 (450)
T PRK00149 267 SRFEWGLTVDIEPPDLETRIAILK 290 (450)
T ss_pred hHhcCCeeEEecCCCHHHHHHHHH
Confidence 223444689999999999999886
No 133
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.69 E-value=0.00027 Score=64.29 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=21.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHHh
Q 041067 188 LGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 188 v~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
|.|+|.+|+||||+|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57899999999999999999874
No 134
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.0035 Score=70.45 Aligned_cols=150 Identities=16% Similarity=0.183 Sum_probs=89.9
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC---------------------CCceEE
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD---------------------FEGSCF 218 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~~ 218 (770)
.-+++||-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+-.. |.....
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~e 92 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFE 92 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEE
Confidence 34569999999999999996432 24457899999999999999999875221 111111
Q ss_pred EEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEE
Q 041067 219 LENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIII 296 (770)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Iiv 296 (770)
+.. .... ++..+. +++..+.-. -..++.-++|+|+|+.. ...+.++..+....+.+++|+
T Consensus 93 ida----as~~-~v~~iR-~l~~~~~~~------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIl 154 (509)
T PRK14958 93 VDA----ASRT-KVEDTR-ELLDNIPYA------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFIL 154 (509)
T ss_pred Ecc----cccC-CHHHHH-HHHHHHhhc------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 110 0011 222221 122211100 01245568899999864 457777777766566776666
Q ss_pred EcCch-hhhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 297 TTRNK-QVLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 297 TTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+|.+. .+... ......+++++++.++....+.
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~ 188 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQ 188 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHH
Confidence 55443 33322 2224678899999888766543
No 135
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.67 E-value=0.00033 Score=83.84 Aligned_cols=167 Identities=18% Similarity=0.211 Sum_probs=91.3
Q ss_pred HHHhHhhhhhccccccccCCCCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC------
Q 041067 139 FINEVGNDILKRLDEVFRPRDNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD------ 212 (770)
Q Consensus 139 ~i~~i~~~i~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------ 212 (770)
.+++...++...-.. ..-+.++||+++++++...|.... ..-+.++|.+|+|||++|+.++.++...
T Consensus 161 ~l~~~~~~l~~~a~~-----~~~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l 233 (821)
T CHL00095 161 TLEEFGTNLTKEAID-----GNLDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDIL 233 (821)
T ss_pred HHHHHHHHHHHHHHc-----CCCCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhh
Confidence 455555555443221 223469999999999999996432 2345799999999999999999986431
Q ss_pred CCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH-CCCcEEEEEeCCCChH---------hH-HHH
Q 041067 213 FEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRL-SRMKVLIVFDDVTCLS---------QL-QSL 281 (770)
Q Consensus 213 f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~~---------~~-~~l 281 (770)
-+..+|..+........ ... ....+.+..+.+.+ ..++.+|++|+++... +. +-+
T Consensus 234 ~~~~i~~l~~~~l~ag~-~~~-------------ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lL 299 (821)
T CHL00095 234 EDKLVITLDIGLLLAGT-KYR-------------GEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANIL 299 (821)
T ss_pred cCCeEEEeeHHHHhccC-CCc-------------cHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHh
Confidence 12445544222111100 000 00011122222222 3467999999985321 12 223
Q ss_pred HhcccCCCCCceEEEEcCchhhhhh-------cCcceEEEeCccChHHHHHHHH
Q 041067 282 IGSLYWLTPVSRIIITTRNKQVLRN-------WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 282 ~~~~~~~~~gs~IivTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
.+.+.. + .-++|.+|........ .....++.++..+.++...++.
T Consensus 300 kp~l~r-g-~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr 351 (821)
T CHL00095 300 KPALAR-G-ELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILF 351 (821)
T ss_pred HHHHhC-C-CcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHH
Confidence 333321 1 2345555554433211 1223567888899999888876
No 136
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.67 E-value=0.00032 Score=76.70 Aligned_cols=148 Identities=19% Similarity=0.261 Sum_probs=86.2
Q ss_pred CCcccchHHHHHHHHhhcCC-----------CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCC
Q 041067 162 NKLVGVESKVEEIESILGVE-----------SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSG 230 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 230 (770)
.++.|.++.++++.+.+... -...+-|.++|.+|+|||++|+++++.....| +.+. ..+
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~f---i~V~-~se------ 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATF---LRVV-GSE------ 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCE---EEEe-cch------
Confidence 46789999999998877421 12345688999999999999999999876554 1121 111
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH----------------hHHHHHhcccCC--CCCc
Q 041067 231 GLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS----------------QLQSLIGSLYWL--TPVS 292 (770)
Q Consensus 231 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~--~~gs 292 (770)
+..... +. ........+.....+.+.+|+||+++... .+..++..+..+ ..+.
T Consensus 253 ----L~~k~~----Ge-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 253 ----LIQKYL----GD-GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred ----hhhhhc----ch-HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCe
Confidence 111100 00 00001111222223567889999875321 122233222222 2356
Q ss_pred eEEEEcCchhhhhh-----cCcceEEEeCccChHHHHHHHH
Q 041067 293 RIIITTRNKQVLRN-----WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 293 ~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+||.||...+.... ...+..+++...+.++..++|.
T Consensus 324 ~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~ 364 (438)
T PTZ00361 324 KVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFE 364 (438)
T ss_pred EEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHH
Confidence 78888876554432 1235678999999999988885
No 137
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.0007 Score=73.66 Aligned_cols=152 Identities=18% Similarity=0.255 Sum_probs=88.8
Q ss_pred CCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhC--------CCCceEEEEecchhhccCC
Q 041067 159 DNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISG--------DFEGSCFLENVREESQRSG 230 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--------~f~~~~~~~~~~~~~~~~~ 230 (770)
..-++++|.+..++.+...+..+ .-.+.+.++|+.|+||||+|+.+.+.+.. .|...++-. ... ...
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~~~-~~~- 88 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--DAA-SNN- 88 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--ccc-cCC-
Confidence 34456899999999999998643 23467889999999999999999887643 122222211 110 001
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH--hHHHHHhcccCCCCCceEEEEc-Cchhhhhh-
Q 041067 231 GLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS--QLQSLIGSLYWLTPVSRIIITT-RNKQVLRN- 306 (770)
Q Consensus 231 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTT-R~~~v~~~- 306 (770)
++..+. ++..+.... -..+++-++|+|+++... .++.+...+......+.+|++| +...+...
T Consensus 89 ~~~~i~-~l~~~~~~~------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l 155 (367)
T PRK14970 89 SVDDIR-NLIDQVRIP------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTI 155 (367)
T ss_pred CHHHHH-HHHHHHhhc------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHH
Confidence 222221 111111100 012345579999987543 4667766554434455555554 33333322
Q ss_pred cCcceEEEeCccChHHHHHHHH
Q 041067 307 WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 307 ~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
......+++.++++++....+.
T Consensus 156 ~sr~~~v~~~~~~~~~l~~~l~ 177 (367)
T PRK14970 156 LSRCQIFDFKRITIKDIKEHLA 177 (367)
T ss_pred HhcceeEecCCccHHHHHHHHH
Confidence 2234578999999998877765
No 138
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.67 E-value=0.00069 Score=70.44 Aligned_cols=124 Identities=13% Similarity=0.106 Sum_probs=68.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhCC--CCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHC-CC
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISGD--FEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLS-RM 263 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~-~k 263 (770)
.+.++|.+|+||||+|+.++..+... .....|+.. ....+ ...+.+.. . ..+.+.++ -.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v---------~~~~l----~~~~~g~~--~---~~~~~~~~~a~ 121 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSV---------TRDDL----VGQYIGHT--A---PKTKEILKRAM 121 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEe---------cHHHH----hHhhcccc--h---HHHHHHHHHcc
Confidence 58899999999999999988765432 111223321 11111 11121111 0 11122221 13
Q ss_pred cEEEEEeCCCCh-----------HhHHHHHhcccCCCCCceEEEEcCchhhhhhc--------CcceEEEeCccChHHHH
Q 041067 264 KVLIVFDDVTCL-----------SQLQSLIGSLYWLTPVSRIIITTRNKQVLRNW--------GVRKIYEMKALEYHHAI 324 (770)
Q Consensus 264 r~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~--------~~~~~~~l~~L~~~ea~ 324 (770)
.-+|++|+++.. +.++.+...+.....+.+||+++-....-... .....+++++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 368889999632 22455555554444566777776543221111 12357899999999998
Q ss_pred HHHH
Q 041067 325 ELFI 328 (770)
Q Consensus 325 ~Lf~ 328 (770)
+++.
T Consensus 202 ~I~~ 205 (284)
T TIGR02880 202 VIAG 205 (284)
T ss_pred HHHH
Confidence 8875
No 139
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.67 E-value=4.7e-06 Score=91.65 Aligned_cols=173 Identities=21% Similarity=0.201 Sum_probs=92.7
Q ss_pred ccCcCCcEEccCcCcCccccCCC-CCCCCCccceeEEeccCCCCCcccCccCCCCC-CCcEEEecCCC---------CCC
Q 041067 576 KHYRKLNQIIPAACNKLIAKTPN-PMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLE-FLTKLNLSGCS---------KLK 644 (770)
Q Consensus 576 ~~l~~L~~L~L~~~~~l~~~~p~-~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~L~~~~---------~l~ 644 (770)
.-+++++.|.+-.... .-|. +..+-.+++|++|.|++|.. ... ..+..+. .|++|.-.+.. -.+
T Consensus 81 d~lqkt~~lkl~~~pa---~~pt~pi~ifpF~sLr~LElrg~~L-~~~-~GL~~lr~qLe~LIC~~Sl~Al~~v~ascgg 155 (1096)
T KOG1859|consen 81 DFLQKTKVLKLLPSPA---RDPTEPISIFPFRSLRVLELRGCDL-STA-KGLQELRHQLEKLICHNSLDALRHVFASCGG 155 (1096)
T ss_pred HHHhhheeeeecccCC---CCCCCCceeccccceeeEEecCcch-hhh-hhhHHHHHhhhhhhhhccHHHHHHHHHHhcc
Confidence 3455566665555432 2222 33556678999999999983 221 1111111 13333211100 011
Q ss_pred ccCCccc-cCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCC
Q 041067 645 RLPEISS-GNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFS 723 (770)
Q Consensus 645 ~lp~~~~-~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~ 723 (770)
++..... ..|..-+.++|.+..+..++.-++.|+.|+|+.|+... .. .+..++.|++|+|+.|. +..+|..=..-.
T Consensus 156 d~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc 232 (1096)
T KOG1859|consen 156 DISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC 232 (1096)
T ss_pred ccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccch-hccccccchhhh
Confidence 2211111 34555566667777666677777777777777766432 22 46667777777777643 455554211112
Q ss_pred CCcEEEccCCCCcccchhhhCCCCCcEEecccCc
Q 041067 724 SPIILNLAKTNIERIPKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 724 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~ 757 (770)
.|..|.+++|.++++.. +.+|.+|+.||+++|-
T Consensus 233 ~L~~L~lrnN~l~tL~g-ie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 233 KLQLLNLRNNALTTLRG-IENLKSLYGLDLSYNL 265 (1096)
T ss_pred hheeeeecccHHHhhhh-HHhhhhhhccchhHhh
Confidence 36677777777666653 6667777777777664
No 140
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.67 E-value=0.0014 Score=77.34 Aligned_cols=155 Identities=13% Similarity=0.078 Sum_probs=90.0
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCC--c-eEEEEecchhhccCCCHHHHH
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFE--G-SCFLENVREESQRSGGLSCLQ 236 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~-~~~~~~~~~~~~~~~~~~~l~ 236 (770)
.-.++||.+..++.|...+..+. -...+.++|..|+||||+|+.+++.+-.... . .|=.| .-.
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C-------------~sC 78 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC-------------DSC 78 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc-------------HHH
Confidence 34579999999999999986432 2345789999999999999999988632100 0 00000 000
Q ss_pred HHHHHH---------HhcCC-CCcchHHHHHHH-----HCCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEcC
Q 041067 237 QKLLSN---------LLKHK-NVMPFIDLIFRR-----LSRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITTR 299 (770)
Q Consensus 237 ~~ll~~---------~~~~~-~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR 299 (770)
+.+... +.... ...+.+..+.+. ..+++-++|||+++.. ...+.|+..+......+.+|++|.
T Consensus 79 ~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt 158 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT 158 (824)
T ss_pred HHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 000000 00000 000111112111 2345557889999865 357777777766666666665554
Q ss_pred c-hhhhhhc-CcceEEEeCccChHHHHHHHH
Q 041067 300 N-KQVLRNW-GVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 300 ~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+ ..+...+ .....|++..++.++..+.+.
T Consensus 159 ~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~ 189 (824)
T PRK07764 159 EPDKVIGTIRSRTHHYPFRLVPPEVMRGYLE 189 (824)
T ss_pred ChhhhhHHHHhheeEEEeeCCCHHHHHHHHH
Confidence 3 3444332 335789999999988877664
No 141
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.66 E-value=5.2e-07 Score=98.93 Aligned_cols=125 Identities=25% Similarity=0.200 Sum_probs=55.7
Q ss_pred ceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc-cCccEEeccCcCccccCcccccCCCCCEEeccCC
Q 041067 607 KLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS-GNISWLFLRETAIEELPSSIERLHRLGYLDLLDC 685 (770)
Q Consensus 607 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~ 685 (770)
.|.+.+.++|. +..+-.++.-++.|+.|+|++|. +........ ..|++|||+.|.+..+|.--..-.+|+.|.+++|
T Consensus 165 ~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNR-LVLMDESLQLLPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhh-hhhhHHHHhcccccccccccchhccccccchhhhhheeeeeccc
Confidence 34444444443 44444444445555555555554 111111111 3455555555555555532111123555555555
Q ss_pred CCCCCCCcccCCCCCCcEEEeecCCCCccc-CcccCCCCCCcEEEccCCCC
Q 041067 686 KRLKSLPRSLWMLKSLGVLNLSGCSNLQRL-PECLAQFSSPIILNLAKTNI 735 (770)
Q Consensus 686 ~~~~~lp~~l~~l~~L~~L~l~~~~~~~~l-p~~l~~l~~L~~L~L~~~~l 735 (770)
.. +++ .++.+|.+|+.|+++.|-..+.- .+-+..+..|+.|.|.||++
T Consensus 243 ~l-~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 243 AL-TTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HH-Hhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 42 222 13455555555555554322210 11234445555556666554
No 142
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.0013 Score=75.02 Aligned_cols=165 Identities=16% Similarity=0.191 Sum_probs=90.9
Q ss_pred CCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhC--CCCceEEEEecchhhccCCCHHHHH
Q 041067 159 DNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISG--DFEGSCFLENVREESQRSGGLSCLQ 236 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~l~ 236 (770)
..-..+||-+..+..|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-. ..+...|...+.+.+ +.-...
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~C----g~C~sC 87 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPC----GECESC 87 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCC----ccCHHH
Confidence 34457999999999999988533 22455889999999999999999988532 111111111100000 000000
Q ss_pred HHHHHH-------HhcCCC-CcchHHHHHHHH-----CCCcEEEEEeCCCChH--hHHHHHhcccCCCCCceEEE-EcCc
Q 041067 237 QKLLSN-------LLKHKN-VMPFIDLIFRRL-----SRMKVLIVFDDVTCLS--QLQSLIGSLYWLTPVSRIII-TTRN 300 (770)
Q Consensus 237 ~~ll~~-------~~~~~~-~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~Iiv-TTR~ 300 (770)
+.+... +.+... ..+.+..+.+.+ .+.+-++|+|+++... ..+.|+..+....+.+.+|+ |++.
T Consensus 88 ~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~ 167 (620)
T PRK14954 88 RDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTEL 167 (620)
T ss_pred HHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 111000 000000 011111222222 2445578999997653 46777777765555666554 4444
Q ss_pred hhhhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 301 KQVLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 301 ~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
..+... ......+++..++.++....+.
T Consensus 168 ~kLl~TI~SRc~~vef~~l~~~ei~~~L~ 196 (620)
T PRK14954 168 HKIPATIASRCQRFNFKRIPLDEIQSQLQ 196 (620)
T ss_pred hhhhHHHHhhceEEecCCCCHHHHHHHHH
Confidence 444433 2345789999999998776664
No 143
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.64 E-value=0.0012 Score=79.05 Aligned_cols=66 Identities=17% Similarity=0.322 Sum_probs=48.0
Q ss_pred HHHhHhhhhhccccccccCCCCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 139 FINEVGNDILKRLDEVFRPRDNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 139 ~i~~i~~~i~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
.+++...++..+.++ ..-+.++||+.++.++...|.... ..-+.++|.+|+||||+|+.++.++..
T Consensus 160 ~l~~~~~~l~~~~r~-----~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 160 ALKKYTIDLTERAEQ-----GKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHhhhHHHHHhc-----CCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 445555555444332 334569999999999999986432 234669999999999999999998644
No 144
>PRK06620 hypothetical protein; Validated
Probab=97.63 E-value=0.001 Score=65.92 Aligned_cols=104 Identities=12% Similarity=0.110 Sum_probs=62.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcE
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKV 265 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~ 265 (770)
+.+.|||++|+|||+|++.+++.... .++. +. . .. . +.++ ..-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~---~~---~-~~----~--------------------~~~~-~~d 87 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIK---DI---F-FN----E--------------------EILE-KYN 87 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcc---hh---h-hc----h--------------------hHHh-cCC
Confidence 56899999999999999997765421 2221 00 0 00 0 0111 224
Q ss_pred EEEEeCCCChHh--HHHHHhcccCCCCCceEEEEcCchh-------hhhhcCcceEEEeCccChHHHHHHHH
Q 041067 266 LIVFDDVTCLSQ--LQSLIGSLYWLTPVSRIIITTRNKQ-------VLRNWGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 266 LlVLDdv~~~~~--~~~l~~~~~~~~~gs~IivTTR~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
++++||++...+ +-.+...+. ..|..||+|++... ....+...-+++++++++++-.+++.
T Consensus 88 ~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~ 157 (214)
T PRK06620 88 AFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIF 157 (214)
T ss_pred EEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHH
Confidence 678899975332 222222222 35678999987432 22223444689999999999777775
No 145
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.62 E-value=0.00067 Score=81.55 Aligned_cols=150 Identities=11% Similarity=0.117 Sum_probs=84.3
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC------CceEEEEecchhhccCCCHH
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDF------EGSCFLENVREESQRSGGLS 233 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 233 (770)
.-+.++||+.++.++...|.... ...+.++|.+|+|||++|+.++.++...+ ...+|..+...
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~--------- 239 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA--------- 239 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH---------
Confidence 34569999999999999986443 23456899999999999999999875432 23344432211
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHH-C-CCcEEEEEeCCCChH----------hHHHHHhcccCCCCC-ceEEEEcCc
Q 041067 234 CLQQKLLSNLLKHKNVMPFIDLIFRRL-S-RMKVLIVFDDVTCLS----------QLQSLIGSLYWLTPV-SRIIITTRN 300 (770)
Q Consensus 234 ~l~~~ll~~~~~~~~~~~~~~~l~~~L-~-~kr~LlVLDdv~~~~----------~~~~l~~~~~~~~~g-s~IivTTR~ 300 (770)
+.. ...-..........+.+.+ + +++.+|++|+++... ..+.+.+.+ ..| -++|-+|..
T Consensus 240 -l~a----~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l---~~g~i~~IgaTt~ 311 (852)
T TIGR03346 240 -LIA----GAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL---ARGELHCIGATTL 311 (852)
T ss_pred -Hhh----cchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh---hcCceEEEEeCcH
Confidence 110 0000000011122222222 2 468999999986432 122233222 223 344444443
Q ss_pred hhhhhh-------cCcceEEEeCccChHHHHHHHH
Q 041067 301 KQVLRN-------WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 301 ~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
...... ......+.++..+.++..+++.
T Consensus 312 ~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~ 346 (852)
T TIGR03346 312 DEYRKYIEKDAALERRFQPVFVDEPTVEDTISILR 346 (852)
T ss_pred HHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHH
Confidence 332111 1123467899999999999886
No 146
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.60 E-value=0.0025 Score=71.76 Aligned_cols=158 Identities=16% Similarity=0.240 Sum_probs=90.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCC--ceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCC
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFE--GSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRM 263 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~k 263 (770)
..+.|||..|+|||.|++++++.....+. .+.|+. ...+..++...+... ....+++++++-
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aeef~~el~~al~~~-----~~~~f~~~y~~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEEFTNEFINSIRDG-----KGDSFRRRYREM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHHHHHHHhc-----cHHHHHHHhhcC
Confidence 35899999999999999999998765432 234543 233334443333221 123344444433
Q ss_pred cEEEEEeCCCCh---HhH-HHHHhcccC-CCCCceEEEEcCch---------hhhhhcCcceEEEeCccChHHHHHHHH-
Q 041067 264 KVLIVFDDVTCL---SQL-QSLIGSLYW-LTPVSRIIITTRNK---------QVLRNWGVRKIYEMKALEYHHAIELFI- 328 (770)
Q Consensus 264 r~LlVLDdv~~~---~~~-~~l~~~~~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~- 328 (770)
=+|||||++.. +.| +.++..+.. ...|..|||||+.. .+...+...-+++++..+.+.-.+++.
T Consensus 379 -DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 379 -DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred -CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 47888999653 222 223322221 23466788888753 222334445789999999999988886
Q ss_pred HhccCCCchhHHHHhhHhcC---CCHHHHHHHHHHH
Q 041067 329 MKYAQGVPLALKVLGCFLYE---REKEVWESAIDKL 361 (770)
Q Consensus 329 ~~~~~glPLal~~~g~~L~~---~~~~~w~~~l~~l 361 (770)
...-.|+.+.=.++ .+|.. ++..+.+.++.++
T Consensus 458 ka~~r~l~l~~eVi-~yLa~r~~rnvR~LegaL~rL 492 (617)
T PRK14086 458 KAVQEQLNAPPEVL-EFIASRISRNIRELEGALIRV 492 (617)
T ss_pred HHHhcCCCCCHHHH-HHHHHhccCCHHHHHHHHHHH
Confidence 22223555543332 33322 2555666666554
No 147
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.00083 Score=75.89 Aligned_cols=150 Identities=17% Similarity=0.206 Sum_probs=88.8
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC---------------------CceEE
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDF---------------------EGSCF 218 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~~ 218 (770)
.-.+++|-+..++.+..++..+. -...+.++|..|+||||+|+.+++.+-... ...++
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 34568999999999999886432 234568999999999999999998753211 11111
Q ss_pred EEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH--hHHHHHhcccCCCCCceEEE
Q 041067 219 LENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS--QLQSLIGSLYWLTPVSRIII 296 (770)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~Iiv 296 (770)
+.. .... ++..+ ++++...... -..+++-++|+|+++... ..+.++..+......+.+|+
T Consensus 93 i~~----~~~~-~vd~i-r~l~~~~~~~------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL 154 (527)
T PRK14969 93 VDA----ASNT-QVDAM-RELLDNAQYA------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFIL 154 (527)
T ss_pred eec----cccC-CHHHH-HHHHHHHhhC------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEE
Confidence 110 0000 11111 1111111100 012456789999998654 46777777765555666665
Q ss_pred EcCch-hhhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 297 TTRNK-QVLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 297 TTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+|.+. .+... ......++++.++.++..+.+.
T Consensus 155 ~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~ 188 (527)
T PRK14969 155 ATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQ 188 (527)
T ss_pred EeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHH
Confidence 55443 33322 1224678899999988877664
No 148
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.58 E-value=0.0037 Score=71.35 Aligned_cols=159 Identities=19% Similarity=0.256 Sum_probs=91.4
Q ss_pred CCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCC-c---eEE-EEecchhhccCCCHH
Q 041067 159 DNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFE-G---SCF-LENVREESQRSGGLS 233 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~---~~~-~~~~~~~~~~~~~~~ 233 (770)
..-.+++|.+..++.|.+.+..+. -...+-++|+.|+||||+|+.+++.+-.... . ..+ .+ +.-
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c----------g~c 89 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC----------GVG 89 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC----------ccc
Confidence 345579999999999999886432 2456889999999999999999987532211 0 000 00 000
Q ss_pred HHHHHHHHHH----hc-CCCCcchHHH---HHHHH-----CCCcEEEEEeCCCChH--hHHHHHhcccCCCCCceEEEEc
Q 041067 234 CLQQKLLSNL----LK-HKNVMPFIDL---IFRRL-----SRMKVLIVFDDVTCLS--QLQSLIGSLYWLTPVSRIIITT 298 (770)
Q Consensus 234 ~l~~~ll~~~----~~-~~~~~~~~~~---l~~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTT 298 (770)
.-.+.+.... .. .......++. +.+.+ .+++-++|+|+++... ..+.|+..+....+++.+|++|
T Consensus 90 ~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 90 EHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 0001111000 00 0000011111 21212 2345578999997654 4677777766556667666544
Q ss_pred -Cchhhhhhc-CcceEEEeCccChHHHHHHHH
Q 041067 299 -RNKQVLRNW-GVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 299 -R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
....+...+ .....+++..++.++....+.
T Consensus 170 te~~kll~tI~SRcq~~~f~~l~~~el~~~L~ 201 (598)
T PRK09111 170 TEIRKVPVTVLSRCQRFDLRRIEADVLAAHLS 201 (598)
T ss_pred CChhhhhHHHHhheeEEEecCCCHHHHHHHHH
Confidence 444444332 234689999999998887775
No 149
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.0023 Score=72.49 Aligned_cols=145 Identities=12% Similarity=0.141 Sum_probs=88.4
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC--C-------------------ceEE
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDF--E-------------------GSCF 218 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~-------------------~~~~ 218 (770)
.-.+++|-+..++.|.+.+..+ .-...+.++|..|+||||+|+.+++.+-... + ...+
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~e 92 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVE 92 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 3456899998888888888643 2246788899999999999999998753211 0 0111
Q ss_pred EEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHH-----HCCCcEEEEEeCCCCh--HhHHHHHhcccCCCCC
Q 041067 219 LENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRR-----LSRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPV 291 (770)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~g 291 (770)
+.. .... ++.. +..+.+. ..+++-++|+|+++.. +..+.|+..+......
T Consensus 93 Id~----a~~~-~Id~------------------iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~ 149 (624)
T PRK14959 93 IDG----ASNR-GIDD------------------AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPAR 149 (624)
T ss_pred Eec----cccc-CHHH------------------HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCC
Confidence 110 0000 1111 1112211 2356678999999765 4467777766544455
Q ss_pred ceEEEEcCc-hhhhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 292 SRIIITTRN-KQVLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 292 s~IivTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
..+|++|.+ ..+... ......+++..++.++....+.
T Consensus 150 ~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~ 188 (624)
T PRK14959 150 VTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLT 188 (624)
T ss_pred EEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHH
Confidence 556665544 444433 2224678999999999887765
No 150
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.54 E-value=2e-05 Score=91.10 Aligned_cols=151 Identities=24% Similarity=0.250 Sum_probs=94.0
Q ss_pred cceeEEeccCCCCC-cccCccCC-CCCCCcEEEecCCCCCC-ccCCccc--cCccEEeccCcCccccCcccccCCCCCEE
Q 041067 606 NKLVLLNLRGSKSL-KRLPSRIF-NLEFLTKLNLSGCSKLK-RLPEISS--GNISWLFLRETAIEELPSSIERLHRLGYL 680 (770)
Q Consensus 606 ~~L~~L~L~~~~~l-~~lp~~i~-~l~~L~~L~L~~~~~l~-~lp~~~~--~~L~~L~l~~~~i~~lp~~i~~l~~L~~L 680 (770)
.+|++|+++|.... ..-|..++ .||+|+.|.+++-.... ++-.... ++|..||+++++++.+ ..+++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 45666666664422 12233333 37788888887733211 1111111 5888888888888888 789999999999
Q ss_pred eccCCCCCC-CCCcccCCCCCCcEEEeecCCCCcc------cCcccCCCCCCcEEEccCCCCc-c-cchhhhCCCCCcEE
Q 041067 681 DLLDCKRLK-SLPRSLWMLKSLGVLNLSGCSNLQR------LPECLAQFSSPIILNLAKTNIE-R-IPKSISQLLMLRYL 751 (770)
Q Consensus 681 ~L~~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~------lp~~l~~l~~L~~L~L~~~~l~-~-lp~~l~~l~~L~~L 751 (770)
.+.+-.... .--..+.+|++|+.||+|....... -.++-..+|+|+.|+.|++.+. . +-.-+..-|+|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 988755432 1113578899999999997543321 1233456899999999999877 2 22233445566655
Q ss_pred ecccCc
Q 041067 752 LLSYSE 757 (770)
Q Consensus 752 ~l~~c~ 757 (770)
.+-+|.
T Consensus 281 ~~~~~~ 286 (699)
T KOG3665|consen 281 AALDCL 286 (699)
T ss_pred hhhhhh
Confidence 554443
No 151
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.54 E-value=0.00059 Score=70.53 Aligned_cols=163 Identities=20% Similarity=0.288 Sum_probs=99.7
Q ss_pred CCCcccchHHHHHHHHhhcCCCCC-eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHH
Q 041067 161 KNKLVGVESKVEEIESILGVESKD-VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKL 239 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~~~~~-~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 239 (770)
.+.+.+|+.++..+..++...+.. +..|-|+|-.|.|||.+.+.+.+.... ..+|++. .+. + ..+.+..+|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n~-~ec---f-t~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLNC-VEC---F-TYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeeeh-HHh---c-cHHHHHHHH
Confidence 457889999999999999765553 556699999999999999999987632 4578763 222 3 566677777
Q ss_pred HHHHh-cCCCCc----------chHHHHHH--HHC--CCcEEEEEeCCCChHhHHHHH-hcc----c-CCCCCceEEEEc
Q 041067 240 LSNLL-KHKNVM----------PFIDLIFR--RLS--RMKVLIVFDDVTCLSQLQSLI-GSL----Y-WLTPVSRIIITT 298 (770)
Q Consensus 240 l~~~~-~~~~~~----------~~~~~l~~--~L~--~kr~LlVLDdv~~~~~~~~l~-~~~----~-~~~~gs~IivTT 298 (770)
+.+.. ..++.. +.+..+.+ ... ++.++||||+++...+.+... +.+ . -..+...| +++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~i-ils 155 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVI-ILS 155 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEE-EEe
Confidence 77763 222111 22223333 222 458999999998766533221 111 0 01233333 333
Q ss_pred Cch--hhh-hhcCcc--eEEEeCccChHHHHHHHHHhcc
Q 041067 299 RNK--QVL-RNWGVR--KIYEMKALEYHHAIELFIMKYA 332 (770)
Q Consensus 299 R~~--~v~-~~~~~~--~~~~l~~L~~~ea~~Lf~~~~~ 332 (770)
-.. ... ..+|+. .++..+.-+.+|..+++.-+.+
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCc
Confidence 221 111 123443 3567788899999998874444
No 152
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.53 E-value=0.001 Score=77.89 Aligned_cols=149 Identities=13% Similarity=0.181 Sum_probs=83.8
Q ss_pred CCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC------CCceEEEEecchhhccCCCHHH
Q 041067 161 KNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD------FEGSCFLENVREESQRSGGLSC 234 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~~ 234 (770)
-+.++||+++++++...|.... ..-+.++|.+|+|||++|+.++.++... .+..+|.. ++..
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l----------~~~~ 252 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL----------DIGS 252 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec----------cHHH
Confidence 3469999999999999887532 2335689999999999999999875332 13333432 1111
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHH-CCCcEEEEEeCCCCh----------HhHHH-HHhcccCCCCC-ceEEEEcCch
Q 041067 235 LQQKLLSNLLKHKNVMPFIDLIFRRL-SRMKVLIVFDDVTCL----------SQLQS-LIGSLYWLTPV-SRIIITTRNK 301 (770)
Q Consensus 235 l~~~ll~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~----------~~~~~-l~~~~~~~~~g-s~IivTTR~~ 301 (770)
+. ....-..........+.+.+ +..+.+|++|+++.. .+... +.+.+ ..| -++|-+|...
T Consensus 253 ll----aG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L---~~g~i~vIgATt~~ 325 (758)
T PRK11034 253 LL----AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---SSGKIRVIGSTTYQ 325 (758)
T ss_pred Hh----cccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH---hCCCeEEEecCChH
Confidence 11 00000001112222232333 345689999999642 12222 33332 223 3444444433
Q ss_pred hhhhh-------cCcceEEEeCccChHHHHHHHH
Q 041067 302 QVLRN-------WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 302 ~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+.... ...-+.+.++..+.+++.+++.
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~ 359 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIIN 359 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHH
Confidence 32111 1123579999999999999987
No 153
>PRK08181 transposase; Validated
Probab=97.53 E-value=0.00048 Score=70.42 Aligned_cols=98 Identities=21% Similarity=0.193 Sum_probs=54.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcE
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKV 265 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~ 265 (770)
..+.++|.+|+|||.||.++.+....+.-.+.|+. ...+...+..... ... .....+.+. +.=
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-----------~~~L~~~l~~a~~----~~~-~~~~l~~l~-~~d 169 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-----------TTDLVQKLQVARR----ELQ-LESAIAKLD-KFD 169 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-----------HHHHHHHHHHHHh----CCc-HHHHHHHHh-cCC
Confidence 35899999999999999999998765544455654 2334444322211 111 122222332 334
Q ss_pred EEEEeCCCCh---HhH-HHHHhcccC-CCCCceEEEEcCch
Q 041067 266 LIVFDDVTCL---SQL-QSLIGSLYW-LTPVSRIIITTRNK 301 (770)
Q Consensus 266 LlVLDdv~~~---~~~-~~l~~~~~~-~~~gs~IivTTR~~ 301 (770)
|||+||+... +.+ +.+...+.. ... ..+||||...
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~-~s~IiTSN~~ 209 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYER-RSILITANQP 209 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhC-CCEEEEcCCC
Confidence 9999999532 122 233333321 122 3688888754
No 154
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=3.2e-05 Score=76.67 Aligned_cols=211 Identities=16% Similarity=0.156 Sum_probs=112.5
Q ss_pred eeEEEEcCCCCCCCCCCC----CcccccccccCCCCcccccc---ccccCcCCcEEccCcCcCccccCCCCCCCC-Cccc
Q 041067 536 VKYLHWYGYPLKSLPSNL----SAEKLMLLEVPDSDIEQLWD---CVKHYRKLNQIIPAACNKLIAKTPNPMLMP-RLNK 607 (770)
Q Consensus 536 Lr~L~l~~~~l~~lp~~~----~~~~L~~L~l~~~~i~~l~~---~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~-~L~~ 607 (770)
+..|.+.++.+.+.-... ...+++.|+|.+|.|....+ .+.++|.|+.|+|+.+. + -|++..++ -+.+
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L---~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-L---SSDIKSLPLPLKN 122 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-C---CCccccCcccccc
Confidence 335556666555443322 24788899999998876433 36789999999998753 2 23333443 5678
Q ss_pred eeEEeccCCCCC-cccCccCCCCCCCcEEEecCCCCCCccC--C----ccccCccEEeccCcCcccc---CcccccCCCC
Q 041067 608 LVLLNLRGSKSL-KRLPSRIFNLEFLTKLNLSGCSKLKRLP--E----ISSGNISWLFLRETAIEEL---PSSIERLHRL 677 (770)
Q Consensus 608 L~~L~L~~~~~l-~~lp~~i~~l~~L~~L~L~~~~~l~~lp--~----~~~~~L~~L~l~~~~i~~l---p~~i~~l~~L 677 (770)
|++|-|.+...- ...-+.+..++.++.|.+|.|+. ..+- + -..+.+++|....|..... -.-...++++
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~-rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL-RQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV 201 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh-hhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence 899888765421 22334456778888888887641 1000 0 0002333333333322110 0011234566
Q ss_pred CEEeccCCCCCC-CCCcccCCCCCCcEEEeecCCCCcccC--cccCCCCCCcEEEccCCCCc-ccch------hhhCCCC
Q 041067 678 GYLDLLDCKRLK-SLPRSLWMLKSLGVLNLSGCSNLQRLP--ECLAQFSSPIILNLAKTNIE-RIPK------SISQLLM 747 (770)
Q Consensus 678 ~~L~L~~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~L~~~~l~-~lp~------~l~~l~~ 747 (770)
..+-+..|+.-. .--.+...++.+..|+|+.++ ++.+. +.+..+++|..|.++++++. .+.. -|+.|++
T Consensus 202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~-idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~ 280 (418)
T KOG2982|consen 202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANN-IDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTK 280 (418)
T ss_pred hheeeecCcccchhhcccCCCCCcchhhhhcccc-cccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccc
Confidence 666666654321 111233445555666666543 33332 34667777777777777754 1111 1455666
Q ss_pred CcEEe
Q 041067 748 LRYLL 752 (770)
Q Consensus 748 L~~L~ 752 (770)
++.|+
T Consensus 281 v~vLN 285 (418)
T KOG2982|consen 281 VQVLN 285 (418)
T ss_pred eEEec
Confidence 66665
No 155
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.47 E-value=0.0064 Score=69.05 Aligned_cols=155 Identities=18% Similarity=0.125 Sum_probs=89.9
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC--C-ceEEEEecchhhccCCCHHHHH
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDF--E-GSCFLENVREESQRSGGLSCLQ 236 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~-~~~~~~~~~~~~~~~~~~~~l~ 236 (770)
.-+++||.+..++.|..++..+. -...+.++|..|+||||+|+.+++.+-... + .-|=.| ...
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C-------------~~C 76 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC-------------ESC 76 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc-------------HHH
Confidence 34579999999999999986432 244578999999999999999998754211 0 000000 000
Q ss_pred HHHHHH---------HhcCCC-CcchHHHHHHHH-----CCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEE-Ec
Q 041067 237 QKLLSN---------LLKHKN-VMPFIDLIFRRL-----SRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIII-TT 298 (770)
Q Consensus 237 ~~ll~~---------~~~~~~-~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Iiv-TT 298 (770)
+.+... +..... ..+.+..+.+.. .+++-++|+|+++.. ...+.|+..+........+|+ ||
T Consensus 77 ~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tt 156 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATT 156 (584)
T ss_pred HHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 000000 000000 001111121111 245568899999754 457777777766566666565 44
Q ss_pred Cchhhhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 299 RNKQVLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 299 R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
....+... ......+++..++.++..+.+.
T Consensus 157 e~~kll~TI~SRc~~~~F~~l~~~~i~~~L~ 187 (584)
T PRK14952 157 EPEKVLPTIRSRTHHYPFRLLPPRTMRALIA 187 (584)
T ss_pred ChHhhHHHHHHhceEEEeeCCCHHHHHHHHH
Confidence 44444433 2335789999999998877764
No 156
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.42 E-value=0.0024 Score=73.43 Aligned_cols=158 Identities=15% Similarity=0.175 Sum_probs=89.2
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhC-CCCc---eEEEEecchhhccCCCHHHH
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISG-DFEG---SCFLENVREESQRSGGLSCL 235 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~---~~~~~~~~~~~~~~~~~~~l 235 (770)
.-..++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.++..+-. +... .|-.| ........++.
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C--~~~~~~~~Dvi-- 90 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC--IENVNNSLDII-- 90 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH--HHhhcCCCcEE--
Confidence 34568999999999999986432 2456778999999999999999987422 1100 00000 00000000000
Q ss_pred HHHHHHHHhcCC-CCcchHHHHHHHH-----CCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEE-EEcCchhhhhh
Q 041067 236 QQKLLSNLLKHK-NVMPFIDLIFRRL-----SRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRII-ITTRNKQVLRN 306 (770)
Q Consensus 236 ~~~ll~~~~~~~-~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Ii-vTTR~~~v~~~ 306 (770)
.+.... ...+.+..+.+.. .+++-++|+|+++.. ..+..++..+....+...+| +||+...+...
T Consensus 91 ------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 91 ------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred ------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 000000 0001111222222 256668899999754 35777777766545555555 45555445433
Q ss_pred -cCcceEEEeCccChHHHHHHHH
Q 041067 307 -WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 307 -~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
......+++.+++.++..+.+.
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~ 187 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLE 187 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHH
Confidence 2334689999999999877765
No 157
>PRK09183 transposase/IS protein; Provisional
Probab=97.40 E-value=0.00083 Score=68.78 Aligned_cols=99 Identities=17% Similarity=0.152 Sum_probs=52.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcE
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKV 265 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~ 265 (770)
..+.|+|.+|+|||+||..+.......-..+.|+. ...+...+...... ......+.+.+ .+.-
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~-----------~~~l~~~l~~a~~~----~~~~~~~~~~~-~~~d 166 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT-----------AADLLLQLSTAQRQ----GRYKTTLQRGV-MAPR 166 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-----------HHHHHHHHHHHHHC----CcHHHHHHHHh-cCCC
Confidence 36889999999999999999887543333334443 12222222221111 01112222222 3456
Q ss_pred EEEEeCCCCh----HhHHHHHhcccC-CCCCceEEEEcCch
Q 041067 266 LIVFDDVTCL----SQLQSLIGSLYW-LTPVSRIIITTRNK 301 (770)
Q Consensus 266 LlVLDdv~~~----~~~~~l~~~~~~-~~~gs~IivTTR~~ 301 (770)
++|+||+... ++.+.+...+.. ...++ +||||...
T Consensus 167 lLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 167 LLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred EEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 9999999642 222234433321 22344 78887643
No 158
>CHL00176 ftsH cell division protein; Validated
Probab=97.40 E-value=0.0032 Score=72.43 Aligned_cols=149 Identities=16% Similarity=0.227 Sum_probs=84.9
Q ss_pred CCCcccchHHHHHHHHhhc---CC-------CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCC
Q 041067 161 KNKLVGVESKVEEIESILG---VE-------SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSG 230 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 230 (770)
-++++|.++..+++.+.+. .. ....+-|.++|++|+|||++|++++...... |+. +
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~-i-------- 247 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFS-I-------- 247 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eee-c--------
Confidence 3568898888877766553 11 1224569999999999999999999875332 221 1
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH------------h----HHHHHhcccCC--CCCc
Q 041067 231 GLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS------------Q----LQSLIGSLYWL--TPVS 292 (770)
Q Consensus 231 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~------------~----~~~l~~~~~~~--~~gs 292 (770)
....+..... + .........+.+.....+++|++||++... . +..++.....+ ..+-
T Consensus 248 s~s~f~~~~~----g-~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 248 SGSEFVEMFV----G-VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred cHHHHHHHhh----h-hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 0011111100 0 000011222333445678999999996431 1 33333333222 2355
Q ss_pred eEEEEcCchhhhhh-----cCcceEEEeCccChHHHHHHHH
Q 041067 293 RIIITTRNKQVLRN-----WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 293 ~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
.||.||...+.... ...+..+.++..+.++-.+++.
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~ 363 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILK 363 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHH
Confidence 66667766543321 1234678888889888888886
No 159
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.40 E-value=0.00053 Score=62.83 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=27.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
..+.|+|.+|+||||+|+.++..........+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 47899999999999999999998766553444443
No 160
>PRK06526 transposase; Provisional
Probab=97.39 E-value=0.00034 Score=71.13 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=52.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCc
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMK 264 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr 264 (770)
...+.|+|.+|+|||+||.++.......-..+.|+. ...+...+..... .......+++ + .+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t-----------~~~l~~~l~~~~~----~~~~~~~l~~-l-~~~ 160 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFAT-----------AAQWVARLAAAHH----AGRLQAELVK-L-GRY 160 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhh-----------HHHHHHHHHHHHh----cCcHHHHHHH-h-ccC
Confidence 346899999999999999999987544322333432 2233333322211 1111222222 2 234
Q ss_pred EEEEEeCCCCh---HhHH-HHHhccc-CCCCCceEEEEcCch
Q 041067 265 VLIVFDDVTCL---SQLQ-SLIGSLY-WLTPVSRIIITTRNK 301 (770)
Q Consensus 265 ~LlVLDdv~~~---~~~~-~l~~~~~-~~~~gs~IivTTR~~ 301 (770)
-+||+||+... .... .+...+. ....++ +||||...
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 58999999643 2222 2323221 123344 88888754
No 161
>PRK10536 hypothetical protein; Provisional
Probab=97.39 E-value=0.0014 Score=65.50 Aligned_cols=133 Identities=13% Similarity=0.192 Sum_probs=74.2
Q ss_pred CCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHH-H-hCCCCceEEEEecchhhc----cCCCHHH
Q 041067 161 KNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDK-I-SGDFEGSCFLENVREESQ----RSGGLSC 234 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~-~-~~~f~~~~~~~~~~~~~~----~~~~~~~ 234 (770)
...+.++......+..++.. ...|.+.|.+|.|||+||.++..+ + .+.|+..+.....-+... -..++..
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred CccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHH
Confidence 34577888888888888853 238999999999999999999875 3 444554444321111100 0111111
Q ss_pred ----HHHHHHHHHhcCCCCcchHHHH------------HHHHCCCc---EEEEEeCCCChH--hHHHHHhcccCCCCCce
Q 041067 235 ----LQQKLLSNLLKHKNVMPFIDLI------------FRRLSRMK---VLIVFDDVTCLS--QLQSLIGSLYWLTPVSR 293 (770)
Q Consensus 235 ----l~~~ll~~~~~~~~~~~~~~~l------------~~~L~~kr---~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~ 293 (770)
...-+...+..--.. ...+.+ -.++++.. -+||+|.+.+.. +...++ ...+.+|+
T Consensus 130 K~~p~~~pi~D~L~~~~~~-~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~l---tR~g~~sk 205 (262)
T PRK10536 130 KFAPYFRPVYDVLVRRLGA-SFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFL---TRLGENVT 205 (262)
T ss_pred HHHHHHHHHHHHHHHHhCh-HHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHH---hhcCCCCE
Confidence 111111111100000 001111 13556655 499999998755 344444 44589999
Q ss_pred EEEEcCch
Q 041067 294 IIITTRNK 301 (770)
Q Consensus 294 IivTTR~~ 301 (770)
+|+|--..
T Consensus 206 ~v~~GD~~ 213 (262)
T PRK10536 206 VIVNGDIT 213 (262)
T ss_pred EEEeCChh
Confidence 99985544
No 162
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.39 E-value=0.014 Score=65.34 Aligned_cols=154 Identities=15% Similarity=0.201 Sum_probs=91.2
Q ss_pred CCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhC-CCCc--eEEEE---------------
Q 041067 159 DNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISG-DFEG--SCFLE--------------- 220 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~--~~~~~--------------- 220 (770)
..-++++|-+...+.+...+..+. -.....++|..|+||||+|+.+++.+-. .... .|..+
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 344579999999999999986442 3456689999999999999999987521 1100 01110
Q ss_pred ecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEc
Q 041067 221 NVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITT 298 (770)
Q Consensus 221 ~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTT 298 (770)
.... .... ++..+...+ ..... .-..+++-++|+|+++.. +..+.++..+....+.+++|++|
T Consensus 90 elda-as~~-gId~IReli-e~~~~------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 90 EMDA-ASNR-GIDDIRELI-EQTKY------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred Eecc-cccc-CHHHHHHHH-HHHhh------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 0000 0001 222221111 11000 001134568899999764 34677777776666677777776
Q ss_pred Cch-hhhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 299 RNK-QVLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 299 R~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
.+. .+... ......+++.+++.++..+.+.
T Consensus 155 td~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~ 186 (535)
T PRK08451 155 TDPLKLPATILSRTQHFRFKQIPQNSIISHLK 186 (535)
T ss_pred CChhhCchHHHhhceeEEcCCCCHHHHHHHHH
Confidence 654 22221 1224689999999999887775
No 163
>CHL00181 cbbX CbbX; Provisional
Probab=97.37 E-value=0.0033 Score=65.38 Aligned_cols=126 Identities=13% Similarity=0.182 Sum_probs=68.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCC-C-CceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCC
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGD-F-EGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRM 263 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~k 263 (770)
..+.++|.+|+||||+|+.+++..... + ...-|+. + ....+ .....+.. .......+.+ ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~-v--------~~~~l----~~~~~g~~-~~~~~~~l~~---a~ 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT-V--------TRDDL----VGQYIGHT-APKTKEVLKK---AM 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE-e--------cHHHH----HHHHhccc-hHHHHHHHHH---cc
Confidence 358899999999999999998864321 1 1112332 1 11112 12221111 0011111222 12
Q ss_pred cEEEEEeCCCCh-----------HhHHHHHhcccCCCCCceEEEEcCchhhhhhc--------CcceEEEeCccChHHHH
Q 041067 264 KVLIVFDDVTCL-----------SQLQSLIGSLYWLTPVSRIIITTRNKQVLRNW--------GVRKIYEMKALEYHHAI 324 (770)
Q Consensus 264 r~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~--------~~~~~~~l~~L~~~ea~ 324 (770)
.-+|++|+++.. +..+.+.........+.+||.++....+.... .....+.+++++.+|..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 348899999642 23444555444444556777777543332111 22467999999999988
Q ss_pred HHHH
Q 041067 325 ELFI 328 (770)
Q Consensus 325 ~Lf~ 328 (770)
+++.
T Consensus 203 ~I~~ 206 (287)
T CHL00181 203 QIAK 206 (287)
T ss_pred HHHH
Confidence 8875
No 164
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.0075 Score=67.39 Aligned_cols=145 Identities=15% Similarity=0.146 Sum_probs=87.9
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC-----CCc----------------eEE
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD-----FEG----------------SCF 218 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~----------------~~~ 218 (770)
.-..++|-+..+..+...+..+. -...+.++|..|+||||+|+.++..+-.. .++ ...
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~e 92 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIE 92 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEE
Confidence 34568999999999999996432 24456789999999999999999875311 011 111
Q ss_pred EEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH-----CCCcEEEEEeCCCCh--HhHHHHHhcccCCCCC
Q 041067 219 LENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRL-----SRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPV 291 (770)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~g 291 (770)
+. ..... ++. ....+.+.. .+++-++|+|+++.. +..+.++..+....+.
T Consensus 93 id----aas~~-gvd------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~ 149 (486)
T PRK14953 93 ID----AASNR-GID------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPR 149 (486)
T ss_pred Ee----CccCC-CHH------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 10 00000 111 111222222 245679999999764 3466777666555555
Q ss_pred ceEEEEc-Cchhhhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 292 SRIIITT-RNKQVLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 292 s~IivTT-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
..+|++| +...+... ......+.+.+++.++....+.
T Consensus 150 ~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~ 188 (486)
T PRK14953 150 TIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLK 188 (486)
T ss_pred eEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHH
Confidence 5555554 43333322 2234678999999998877765
No 165
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.35 E-value=0.00048 Score=74.44 Aligned_cols=55 Identities=25% Similarity=0.331 Sum_probs=44.1
Q ss_pred CCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhC--CCCceEEEE
Q 041067 162 NKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISG--DFEGSCFLE 220 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~ 220 (770)
.++++.+..++.+...|..+ +.|.++|++|+|||++|+.+++.+.. .|+.+.|+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 46788899999998888643 35888999999999999999998654 456666665
No 166
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.34 E-value=0.0033 Score=72.38 Aligned_cols=159 Identities=16% Similarity=0.163 Sum_probs=89.0
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHH
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKL 239 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 239 (770)
.-+++||-+..++.|..++..+. -...+.++|..|+||||+|+.+++.+.......-+ . .- +.....+.+
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~----~----~c-~~c~~c~~i 83 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG----R----PC-GTCEMCRAI 83 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC----C----CC-ccCHHHHHH
Confidence 34579999999999998886432 24567899999999999999999876321100000 0 00 000111111
Q ss_pred HHHHhc------C-C-CCcchHHHHHHHH-----CCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEcCc-hhh
Q 041067 240 LSNLLK------H-K-NVMPFIDLIFRRL-----SRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITTRN-KQV 303 (770)
Q Consensus 240 l~~~~~------~-~-~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~-~~v 303 (770)
...... . . ...+.+..+.+.+ .+++-++|+|+++.. +..+.|+..+....+.+.+|++|.+ ..+
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 110000 0 0 0001112222222 245668999999754 4577777776655566666666544 333
Q ss_pred hhhc-CcceEEEeCccChHHHHHHHH
Q 041067 304 LRNW-GVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 304 ~~~~-~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
.... .....++++.++.++....+.
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~ 189 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLR 189 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHH
Confidence 3321 223578888888888776664
No 167
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.34 E-value=0.003 Score=70.01 Aligned_cols=153 Identities=18% Similarity=0.285 Sum_probs=88.0
Q ss_pred CCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC-C--C-ceE----------------E
Q 041067 159 DNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD-F--E-GSC----------------F 218 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f--~-~~~----------------~ 218 (770)
..-++++|.+..++.+...+..+. -...+.++|..|+||||+|+.+++.+-.. - + ..| |
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce
Confidence 344579999999999999986432 24567889999999999999999875321 0 0 000 1
Q ss_pred EEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEE
Q 041067 219 LENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIII 296 (770)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Iiv 296 (770)
+. +... ... ++..+. ++...+. ..-..+.+-++|+|+++.. +..+.+...+....++..+|+
T Consensus 93 ~~-i~g~-~~~-gid~ir-~i~~~l~------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 93 LE-IDGA-SHR-GIEDIR-QINETVL------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred EE-eecc-ccC-CHHHHH-HHHHHHH------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEE
Confidence 10 0000 000 111111 1111000 0001255678899998754 345666666655445666666
Q ss_pred EcC-chhhhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 297 TTR-NKQVLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 297 TTR-~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+|. ...+... ......+++..+++++....+.
T Consensus 157 ~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~ 190 (451)
T PRK06305 157 ATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLA 190 (451)
T ss_pred EeCChHhcchHHHHhceEEeCCCCCHHHHHHHHH
Confidence 553 3333322 2234689999999999877664
No 168
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.32 E-value=0.0062 Score=68.90 Aligned_cols=173 Identities=16% Similarity=0.157 Sum_probs=91.2
Q ss_pred CCCcccchHHHHHHHHhhc---C-------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCC
Q 041067 161 KNKLVGVESKVEEIESILG---V-------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSG 230 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 230 (770)
-++++|.+...+++.+++. . +....+-+.++|++|+|||++|++++......| +. +
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~-i-------- 119 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS-I-------- 119 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee-c--------
Confidence 3468898888777765543 1 122245688999999999999999998753322 11 1
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH----------------hHHHHHhcccCC--CCCc
Q 041067 231 GLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS----------------QLQSLIGSLYWL--TPVS 292 (770)
Q Consensus 231 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~--~~gs 292 (770)
....+... ..+ .........+.......+.+|++|+++... ....++..+..+ ..+-
T Consensus 120 ~~~~~~~~----~~g-~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 120 SGSDFVEM----FVG-VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred cHHHHHHH----Hhc-ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 11111111 000 000011222233334567899999995521 122333333222 2344
Q ss_pred eEEEEcCchhhhh-----hcCcceEEEeCccChHHHHHHHHHhccCCCc----hhHHHHhhHhcCCCHHH
Q 041067 293 RIIITTRNKQVLR-----NWGVRKIYEMKALEYHHAIELFIMKYAQGVP----LALKVLGCFLYEREKEV 353 (770)
Q Consensus 293 ~IivTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~glP----Lal~~~g~~L~~~~~~~ 353 (770)
.||.||...+... ....+..+.++..+.++..+++.. ++.+.+ ..+..++....+.+..+
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~-~l~~~~~~~~~~l~~la~~t~G~sgad 263 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKV-HAKNKKLAPDVDLKAVARRTPGFSGAD 263 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHH-HHhcCCCCcchhHHHHHHhCCCCCHHH
Confidence 5666666543221 113456788998888888888862 222222 23445555544444333
No 169
>PRK06921 hypothetical protein; Provisional
Probab=97.32 E-value=0.00057 Score=70.15 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=29.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCC-CCceEEEE
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGD-FEGSCFLE 220 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 220 (770)
...+.++|..|+|||+||.++++.+..+ -..++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4568999999999999999999987665 44556665
No 170
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.31 E-value=6.5e-06 Score=85.33 Aligned_cols=88 Identities=19% Similarity=0.195 Sum_probs=55.8
Q ss_pred cCCCCCEEeccCCCCCCC--CCcccCCCCCCcEEEeecCCCCccc-----CcccCCCCCCcEEEccCCCCc--ccchhhh
Q 041067 673 RLHRLGYLDLLDCKRLKS--LPRSLWMLKSLGVLNLSGCSNLQRL-----PECLAQFSSPIILNLAKTNIE--RIPKSIS 743 (770)
Q Consensus 673 ~l~~L~~L~L~~~~~~~~--lp~~l~~l~~L~~L~l~~~~~~~~l-----p~~l~~l~~L~~L~L~~~~l~--~lp~~l~ 743 (770)
+.+.|+.|++.+|..... +-.--.+++.|++|.+++|....+. -..-..+..|+.|.+++|+.. .....+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence 456677777777654322 2222345677888888777654432 333355667788888888765 4445567
Q ss_pred CCCCCcEEecccCccCC
Q 041067 744 QLLMLRYLLLSYSESLQ 760 (770)
Q Consensus 744 ~l~~L~~L~l~~c~~L~ 760 (770)
.+++|+.+++-+|....
T Consensus 424 ~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 424 ICRNLERIELIDCQDVT 440 (483)
T ss_pred hCcccceeeeechhhhh
Confidence 77788888888887553
No 171
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.30 E-value=0.00064 Score=69.03 Aligned_cols=87 Identities=17% Similarity=0.235 Sum_probs=57.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhc--------CCCCc-------
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLK--------HKNVM------- 250 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~--------~~~~~------- 250 (770)
..++|.|.+|+||||||+.+++.++.+|+..+++..+.+-.. .+..+.+.+...-.. ..+..
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~---Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTR---EGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcH---HHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 358999999999999999999999888888888775655432 445555554432100 01111
Q ss_pred -chHHHHHHHH--C-CCcEEEEEeCCCCh
Q 041067 251 -PFIDLIFRRL--S-RMKVLIVFDDVTCL 275 (770)
Q Consensus 251 -~~~~~l~~~L--~-~kr~LlVLDdv~~~ 275 (770)
...-.+-+++ + ++.+|+++||+-..
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 1122344555 3 88999999998543
No 172
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.016 Score=60.95 Aligned_cols=161 Identities=14% Similarity=0.137 Sum_probs=94.4
Q ss_pred CCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHh-C--------------CCCceEEEEecchhh
Q 041067 162 NKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKIS-G--------------DFEGSCFLENVREES 226 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~--------------~f~~~~~~~~~~~~~ 226 (770)
.+++|-+..++.+...+..+. -....-++|..|+||+++|..+++.+- . .++...|+.......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 358999999999999986432 246889999999999999999998742 1 223334443110000
Q ss_pred ccCCCHHHHHHHHHHHHh--cCC-CCc--chHHHHHHHHC-----CCcEEEEEeCCCChH--hHHHHHhcccCCCCCceE
Q 041067 227 QRSGGLSCLQQKLLSNLL--KHK-NVM--PFIDLIFRRLS-----RMKVLIVFDDVTCLS--QLQSLIGSLYWLTPVSRI 294 (770)
Q Consensus 227 ~~~~~~~~l~~~ll~~~~--~~~-~~~--~~~~~l~~~L~-----~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~I 294 (770)
.. .. -........ ... ... +.+..+.+.+. +.+-++|+|+++... ..+.++..+.....+.-|
T Consensus 83 -g~-~~---~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fI 157 (314)
T PRK07399 83 -GK-LI---TASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLI 157 (314)
T ss_pred -cc-cc---chhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 00 00 000000110 000 011 23344444443 456688999987643 466777776554433344
Q ss_pred EEEcCchhhhhhc-CcceEEEeCccChHHHHHHHH
Q 041067 295 IITTRNKQVLRNW-GVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 295 ivTTR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
++|++...+.... .....+.+.++++++..+.+.
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~ 192 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLK 192 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHH
Confidence 4555544454443 335789999999999988875
No 173
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.25 E-value=0.0073 Score=64.77 Aligned_cols=129 Identities=14% Similarity=0.174 Sum_probs=80.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCC
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRM 263 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~k 263 (770)
....+.|||..|.|||.|++++.+......+...++.. ........+...+.. ...+..++.. .
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~---------~se~f~~~~v~a~~~-----~~~~~Fk~~y--~ 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL---------TSEDFTNDFVKALRD-----NEMEKFKEKY--S 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec---------cHHHHHHHHHHHHHh-----hhHHHHHHhh--c
Confidence 35679999999999999999999998777774444431 112222333333322 2245566665 3
Q ss_pred cEEEEEeCCCChH---hH-HHHHhcccC-CCCCceEEEEcCch---------hhhhhcCcceEEEeCccChHHHHHHHH
Q 041067 264 KVLIVFDDVTCLS---QL-QSLIGSLYW-LTPVSRIIITTRNK---------QVLRNWGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 264 r~LlVLDdv~~~~---~~-~~l~~~~~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
-=++++||++-.. .| +++...+.. ...|-.||+|++.. ++...+...-++++.+.+.+.....+.
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 3478899996532 12 233333321 23444899998643 233334556789999999999988875
No 174
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.25 E-value=0.0079 Score=63.68 Aligned_cols=65 Identities=6% Similarity=0.106 Sum_probs=44.9
Q ss_pred cEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEcCchh-hhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 264 KVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITTRNKQ-VLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 264 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+=++|+|+++.. +..+.++..+....+++.+|+||.+.+ +... ......+.+.+++.+++.+.+.
T Consensus 107 ~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~ 175 (328)
T PRK05707 107 RKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQ 175 (328)
T ss_pred CeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHH
Confidence 334467999864 457777777766566777777777654 4333 2335679999999999987774
No 175
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.22 E-value=0.021 Score=57.78 Aligned_cols=156 Identities=17% Similarity=0.211 Sum_probs=94.5
Q ss_pred CCCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHh--CCCCceEEEEecchhhccCCCHHHH
Q 041067 158 RDNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKIS--GDFEGSCFLENVREESQRSGGLSCL 235 (770)
Q Consensus 158 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~~~~~~~~~~~~~~~~l 235 (770)
|...++++|-+..+..+.+.+.. ....+...+|++|.|||+-|++++..+- +.|++++-=.|.+... +..-.
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSder----Gisvv 105 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDER----GISVV 105 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccc----cccch
Confidence 44556799999999999998864 5677889999999999999999998753 3466554432222221 22211
Q ss_pred HHHH--HHHHhcCCCCcchHHHHHHHH--CCCc-EEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEcCchhhhhh--
Q 041067 236 QQKL--LSNLLKHKNVMPFIDLIFRRL--SRMK-VLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITTRNKQVLRN-- 306 (770)
Q Consensus 236 ~~~l--l~~~~~~~~~~~~~~~l~~~L--~~kr-~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~-- 306 (770)
..++ ...+.... .... .-++ -.||||+++.. +.|..+......+...+|.|..+-.-+....
T Consensus 106 r~Kik~fakl~~~~---------~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 106 REKIKNFAKLTVLL---------KRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred hhhhcCHHHHhhcc---------ccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 1111 00110000 0000 0123 47889999875 4599998888777777777666554432211
Q ss_pred cCcceEEEeCccChHHHHHHHH
Q 041067 307 WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 307 ~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
......|..++|.+++...-+.
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~ 198 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLE 198 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHH
Confidence 1223467788888877655543
No 176
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.22 E-value=0.00041 Score=49.31 Aligned_cols=40 Identities=33% Similarity=0.390 Sum_probs=26.4
Q ss_pred CCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCcccc
Q 041067 699 KSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIERIP 739 (770)
Q Consensus 699 ~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp 739 (770)
++|++|++++|.. ..+|..+++|++|+.|++++|++++++
T Consensus 1 ~~L~~L~l~~N~i-~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQI-TDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCC-cccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3577777777543 456666777777777777777777655
No 177
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.21 E-value=0.0089 Score=71.09 Aligned_cols=157 Identities=15% Similarity=0.206 Sum_probs=85.1
Q ss_pred CCCcccchHHHHHHHHhhcCC-----------CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccC
Q 041067 161 KNKLVGVESKVEEIESILGVE-----------SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRS 229 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 229 (770)
-+++.|.+..++++.+++... -...+.|.++|.+|+||||||+.+++.....| +.+. ..+.....
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~~ 252 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSKY 252 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhccc
Confidence 345889999999998876421 12245688999999999999999998765432 2221 11111110
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH-------------hHHHHHhcccCCC-CCceEE
Q 041067 230 GGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS-------------QLQSLIGSLYWLT-PVSRII 295 (770)
Q Consensus 230 ~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~~-~gs~Ii 295 (770)
.+.. .......+.......+.+|++|+++... ....+...+.... .+..++
T Consensus 253 ~g~~---------------~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 253 YGES---------------EERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred ccHH---------------HHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 0000 0011112222234566899999985421 1233333332222 233344
Q ss_pred E-EcCchh-hhhhc----CcceEEEeCccChHHHHHHHHHhccCCCch
Q 041067 296 I-TTRNKQ-VLRNW----GVRKIYEMKALEYHHAIELFIMKYAQGVPL 337 (770)
Q Consensus 296 v-TTR~~~-v~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~glPL 337 (770)
| ||...+ +.... ..+..+.+...+.++..+++. ..+.+.|+
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~-~~~~~~~l 364 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILK-VHTRNMPL 364 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHH-HHhcCCCC
Confidence 4 444332 21111 224567888888888888886 33445554
No 178
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.19 E-value=0.00064 Score=65.29 Aligned_cols=36 Identities=28% Similarity=0.270 Sum_probs=26.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
..-+.++|..|+|||.||.++.+....+=-.+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 346999999999999999999988655433455554
No 179
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.18 E-value=0.015 Score=66.72 Aligned_cols=161 Identities=16% Similarity=0.196 Sum_probs=88.1
Q ss_pred CCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhC-CC-C-ceEEEEe-cchhhccC-CCHH
Q 041067 159 DNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISG-DF-E-GSCFLEN-VREESQRS-GGLS 233 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f-~-~~~~~~~-~~~~~~~~-~~~~ 233 (770)
..-++++|.+...+.|...+..+. -...+.++|..|+||||+|+.+++.+-. +. + ..|-.|. +.+..... .++.
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~ 91 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVF 91 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCee
Confidence 344579999999999999886432 2456789999999999999999987532 11 0 0000000 00000000 0000
Q ss_pred HHHHHHHHHHhcCCC-CcchHHHHHHHH-----CCCcEEEEEeCCCChH--hHHHHHhcccCCCCCceEEE-EcCchhhh
Q 041067 234 CLQQKLLSNLLKHKN-VMPFIDLIFRRL-----SRMKVLIVFDDVTCLS--QLQSLIGSLYWLTPVSRIII-TTRNKQVL 304 (770)
Q Consensus 234 ~l~~~ll~~~~~~~~-~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~Iiv-TTR~~~v~ 304 (770)
.+.+... ..+-+..+.+.+ .+++-++|+|+++... ..+.|+..+....+...+|+ ||....+.
T Consensus 92 --------eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 92 --------EIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred --------eeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 0000000 001111222221 2344578899997643 46777777665555666654 55545454
Q ss_pred hhc-CcceEEEeCccChHHHHHHHH
Q 041067 305 RNW-GVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 305 ~~~-~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
... .....+++..++.++....+.
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~ 188 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLR 188 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHH
Confidence 332 234678889999888776664
No 180
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.18 E-value=0.015 Score=66.91 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=88.5
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC-CCceEEEEecchhhccCCCHHHHHHH
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD-FEGSCFLENVREESQRSGGLSCLQQK 238 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (770)
.-..++|.+..++.|..++..+. -...+.++|..|+||||+|+.+++.+-.. .+.... . . - +.-...+.
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~-~----~---C-g~C~~C~~ 83 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTP-E----P---C-GKCELCRA 83 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCC-C----C---C-cccHHHHH
Confidence 34579999999999999986443 23567899999999999999999885332 110000 0 0 0 00011111
Q ss_pred HHHHHhc-----CCCCc---chHHHHHHHH-----CCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEc-Cchh
Q 041067 239 LLSNLLK-----HKNVM---PFIDLIFRRL-----SRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITT-RNKQ 302 (770)
Q Consensus 239 ll~~~~~-----~~~~~---~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTT-R~~~ 302 (770)
+...... ..... +.+..+.+.+ .+.+-++|+|+++.. +..+.|+..+........+|++| ....
T Consensus 84 i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ 163 (620)
T PRK14948 84 IAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQR 163 (620)
T ss_pred HhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhh
Confidence 1110000 00000 1111221221 244568899999864 45777777776544455555444 4333
Q ss_pred hhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 303 VLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 303 v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+... ......+++..++.++....+.
T Consensus 164 llpTIrSRc~~~~f~~l~~~ei~~~L~ 190 (620)
T PRK14948 164 VLPTIISRCQRFDFRRIPLEAMVQHLS 190 (620)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHH
Confidence 4333 2234678888998888776554
No 181
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.17 E-value=0.0035 Score=75.18 Aligned_cols=114 Identities=17% Similarity=0.241 Sum_probs=65.9
Q ss_pred CCcccchHHHHHHHHhhcCC------CCC-eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHH
Q 041067 162 NKLVGVESKVEEIESILGVE------SKD-VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSC 234 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~------~~~-~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 234 (770)
..++|.+..++.+...+... .+. ..++.++|..|+|||++|+.+++.....-...+.+. ..+....
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id-~se~~~~------ 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID-MSEFMEK------ 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE-hHHhhhh------
Confidence 46899999999988877521 122 357889999999999999999987643333333332 2222111
Q ss_pred HHHHHHHHHhcCCCCc---chHHHHHHHHCCCc-EEEEEeCCCC--hHhHHHHHhcc
Q 041067 235 LQQKLLSNLLKHKNVM---PFIDLIFRRLSRMK-VLIVFDDVTC--LSQLQSLIGSL 285 (770)
Q Consensus 235 l~~~ll~~~~~~~~~~---~~~~~l~~~L~~kr-~LlVLDdv~~--~~~~~~l~~~~ 285 (770)
.....+.+..+.. +....+.+.++.++ -+|+||+++. .+.+..++..+
T Consensus 641 ---~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~il 694 (857)
T PRK10865 641 ---HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL 694 (857)
T ss_pred ---hhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHH
Confidence 1122222222111 11122334443333 6999999984 44566666655
No 182
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.16 E-value=0.0058 Score=58.95 Aligned_cols=50 Identities=28% Similarity=0.303 Sum_probs=40.6
Q ss_pred CCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 159 DNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
..-.++||-++.++++.-.-. +.+.+.+.|.||+|+||||-+..+++.+-
T Consensus 24 ~~l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 344569999999998876663 44577899999999999999999998753
No 183
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.15 E-value=0.0011 Score=67.52 Aligned_cols=75 Identities=24% Similarity=0.255 Sum_probs=44.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCC
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRM 263 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~k 263 (770)
...-+.++|.+|+|||.||.++.+++...--.+.|+. ...+..++...... ......+.+.++ +
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~-----------~~el~~~Lk~~~~~----~~~~~~l~~~l~-~ 167 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT-----------APDLLSKLKAAFDE----GRLEEKLLRELK-K 167 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhc----CchHHHHHHHhh-c
Confidence 3456899999999999999999999874333444443 33344444333322 111222333222 2
Q ss_pred cEEEEEeCCCC
Q 041067 264 KVLIVFDDVTC 274 (770)
Q Consensus 264 r~LlVLDdv~~ 274 (770)
-=||||||+-.
T Consensus 168 ~dlLIiDDlG~ 178 (254)
T COG1484 168 VDLLIIDDIGY 178 (254)
T ss_pred CCEEEEecccC
Confidence 23889999854
No 184
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.13 E-value=0.0072 Score=68.71 Aligned_cols=160 Identities=15% Similarity=0.148 Sum_probs=90.4
Q ss_pred CCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC-----CCceEEEEecchhhccC-CCH
Q 041067 159 DNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD-----FEGSCFLENVREESQRS-GGL 232 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~~~~~-~~~ 232 (770)
..-.+++|-+..++.+...+..+. -.+.+.++|..|+||||+|+.+++.+-.. +++.. ..+..+..... .++
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~-C~~C~~i~~~~~~dv 90 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE-CSSCKSIDNDNSLDV 90 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc-chHHHHHHcCCCCCe
Confidence 344579999999999999996432 34568899999999999999999875321 11100 00000000000 000
Q ss_pred HHHHHHHHHHHhcCC-CCcchHHHHHHH-----HCCCcEEEEEeCCCChH--hHHHHHhcccCCCCCceEEEEcCc-hhh
Q 041067 233 SCLQQKLLSNLLKHK-NVMPFIDLIFRR-----LSRMKVLIVFDDVTCLS--QLQSLIGSLYWLTPVSRIIITTRN-KQV 303 (770)
Q Consensus 233 ~~l~~~ll~~~~~~~-~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~-~~v 303 (770)
. .+.+.. ...+.+..+.+. ..+++-++|+|+++... .++.++..+....+...+|.+|.+ ..+
T Consensus 91 ~--------~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 91 I--------EIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred E--------EecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 0 000000 000111111111 13456688999997653 577787777655566666665543 333
Q ss_pred hhh-cCcceEEEeCccChHHHHHHHH
Q 041067 304 LRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 304 ~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
... ......+++.+++.++..+.+.
T Consensus 163 ~~tI~SRc~~~~f~~l~~~el~~~L~ 188 (563)
T PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLK 188 (563)
T ss_pred HHHHHHhceEEEecCCCHHHHHHHHH
Confidence 322 2234678999999988877765
No 185
>PRK08118 topology modulation protein; Reviewed
Probab=97.11 E-value=0.0012 Score=62.81 Aligned_cols=32 Identities=28% Similarity=0.534 Sum_probs=26.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh---CCCCceEE
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKIS---GDFEGSCF 218 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~---~~f~~~~~ 218 (770)
.|.|+|++|+||||||+.+++... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 589999999999999999999854 34666665
No 186
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.10 E-value=0.017 Score=66.56 Aligned_cols=149 Identities=16% Similarity=0.253 Sum_probs=90.2
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhC-----------------------CCCce
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISG-----------------------DFEGS 216 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-----------------------~f~~~ 216 (770)
.-+.++|-+..++.+...+..+. -...+.++|..|+||||+|+.++..+-. +|+..
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~ 93 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH 93 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE
Confidence 34579999999999999986432 2456889999999999999999987531 12211
Q ss_pred EEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH--hHHHHHhcccCCCCCceE
Q 041067 217 CFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS--QLQSLIGSLYWLTPVSRI 294 (770)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~I 294 (770)
. +. . .... ++..+. .+..++... -..+++=++|+|+++... .++.|+..+.....++.+
T Consensus 94 ~-ld-~---~~~~-~vd~Ir-~li~~~~~~------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tif 154 (614)
T PRK14971 94 E-LD-A---ASNN-SVDDIR-NLIEQVRIP------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIF 154 (614)
T ss_pred E-ec-c---cccC-CHHHHH-HHHHHHhhC------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEE
Confidence 1 11 0 0000 111111 111111000 012345578999987653 577777777665566666
Q ss_pred EE-EcCchhhhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 295 II-TTRNKQVLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 295 iv-TTR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
|+ ||+...+... .....++++++++.++....+.
T Consensus 155 IL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~ 190 (614)
T PRK14971 155 ILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQ 190 (614)
T ss_pred EEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHH
Confidence 55 4454555443 2335789999999999887775
No 187
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.08 E-value=0.0018 Score=63.65 Aligned_cols=110 Identities=14% Similarity=0.103 Sum_probs=66.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE-ecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCc
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE-NVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMK 264 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr 264 (770)
..|.|+|..|.||||++..+...+.......++.. +-.+. ... ... .+..+.....+.....+.++..|+..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~-~~~-~~~----~~i~q~~vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEF-VHE-SKR----SLINQREVGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccc-ccc-Ccc----ceeeecccCCCccCHHHHHHHHhcCCc
Confidence 47899999999999999999888765555444432 11111 000 000 111110001112245567778887777
Q ss_pred EEEEEeCCCChHhHHHHHhcccCCCCCceEEEEcCchhhh
Q 041067 265 VLIVFDDVTCLSQLQSLIGSLYWLTPVSRIIITTRNKQVL 304 (770)
Q Consensus 265 ~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~ 304 (770)
=.+++|.+.+.+.+....... ..|-.++.|+...++.
T Consensus 76 d~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 76 DVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 899999999888766655443 3455677887766554
No 188
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.07 E-value=0.0031 Score=66.62 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=28.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
..+.++|..|+|||+||.++++.+..+-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56999999999999999999998765544566665
No 189
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.05 E-value=3.2e-05 Score=68.08 Aligned_cols=98 Identities=23% Similarity=0.282 Sum_probs=49.8
Q ss_pred eeEEeccCCCCCcccCc---cCCCCCCCcEEEecCCCCCCccCCccc---cCccEEeccCcCccccCcccccCCCCCEEe
Q 041067 608 LVLLNLRGSKSLKRLPS---RIFNLEFLTKLNLSGCSKLKRLPEISS---GNISWLFLRETAIEELPSSIERLHRLGYLD 681 (770)
Q Consensus 608 L~~L~L~~~~~l~~lp~---~i~~l~~L~~L~L~~~~~l~~lp~~~~---~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~ 681 (770)
+..++|+.|. +..+++ .+.....|...+|++|. ++.+|+.+. +.++.|++.+|.+..+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccch-hhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 4556677776 333332 33344455556666654 555554433 345555555555555555555555555555
Q ss_pred ccCCCCCCCCCcccCCCCCCcEEEeec
Q 041067 682 LLDCKRLKSLPRSLWMLKSLGVLNLSG 708 (770)
Q Consensus 682 L~~~~~~~~lp~~l~~l~~L~~L~l~~ 708 (770)
++.|+. ...|..+..|.+|..|+..+
T Consensus 107 l~~N~l-~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 107 LRFNPL-NAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred cccCcc-ccchHHHHHHHhHHHhcCCC
Confidence 555542 23344444444555554444
No 190
>PHA00729 NTP-binding motif containing protein
Probab=97.05 E-value=0.0024 Score=62.91 Aligned_cols=27 Identities=33% Similarity=0.346 Sum_probs=23.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
+...|.|+|.+|+||||||..+.+++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999998854
No 191
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.04 E-value=0.0051 Score=60.88 Aligned_cols=55 Identities=18% Similarity=0.434 Sum_probs=40.6
Q ss_pred CCCCCCcccchHHHHHHHHhhc--CCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 158 RDNKNKLVGVESKVEEIESILG--VESKDVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 158 ~~~~~~~vGr~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
+...+.++|.|.+.+.|.+=.. ........|-+||..|.|||++++++.+.+...
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 3455689999999998865322 011234467889999999999999999987653
No 192
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.012 Score=60.63 Aligned_cols=147 Identities=18% Similarity=0.340 Sum_probs=88.1
Q ss_pred CCcccchHHHHHHHHhhcCCC-----------CCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCC
Q 041067 162 NKLVGVESKVEEIESILGVES-----------KDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSG 230 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~~-----------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 230 (770)
..+=|-++++++|.+....+- +-++=|-+||++|.|||-||++|+++.... |+..+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-----FIrvv-------- 217 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-----FIRVV-------- 217 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-----EEEec--------
Confidence 456689999999998775321 235678999999999999999999986543 33311
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHH-CCCcEEEEEeCCCChH----------------hHHHHHhcccCCCC--C
Q 041067 231 GLSCLQQKLLSNLLKHKNVMPFIDLIFRRL-SRMKVLIVFDDVTCLS----------------QLQSLIGSLYWLTP--V 291 (770)
Q Consensus 231 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~~--g 291 (770)
+- .+.++. .++ ...+...+.+.- ...+..|.+|.++... ..-+|+..+..|.+ .
T Consensus 218 gS-ElVqKY----iGE--GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 218 GS-ELVQKY----IGE--GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred cH-HHHHHH----hcc--chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 11 122222 111 111222222222 2467999999885422 14455666666654 4
Q ss_pred ceEEEEcCchhhhh-----hcCcceEEEeCccChHHHHHHHH
Q 041067 292 SRIIITTRNKQVLR-----NWGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 292 s~IivTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
-|||..|-..+++. --..+..++++.-+.+.-.+.|.
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~ 332 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILK 332 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHH
Confidence 58887776555542 22346788888555555556665
No 193
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.02 E-value=0.0034 Score=75.54 Aligned_cols=130 Identities=18% Similarity=0.242 Sum_probs=74.7
Q ss_pred CCCcccchHHHHHHHHhhcCC------CCC-eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHH
Q 041067 161 KNKLVGVESKVEEIESILGVE------SKD-VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLS 233 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~~------~~~-~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 233 (770)
...++|.+..++.+...+... .+. ..++.++|+.|+|||++|+.+.......-...+.+. .++..... ..
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d-~s~~~~~~-~~- 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID-MSEYMEKH-SV- 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEe-chhhcccc-hH-
Confidence 356999999999998888531 112 457889999999999999999988654333333333 33322211 11
Q ss_pred HHHHHHHHHHhcCCCCc---chHHHHHHHHCCCc-EEEEEeCCCCh--HhHHHHHhcccCC----C-------CCceEEE
Q 041067 234 CLQQKLLSNLLKHKNVM---PFIDLIFRRLSRMK-VLIVFDDVTCL--SQLQSLIGSLYWL----T-------PVSRIII 296 (770)
Q Consensus 234 ~l~~~ll~~~~~~~~~~---~~~~~l~~~L~~kr-~LlVLDdv~~~--~~~~~l~~~~~~~----~-------~gs~Iiv 296 (770)
..+.+..+.. +....+.+.++.++ .+|+||+++.. +.+..++..+..+ + ..+-||+
T Consensus 641 -------~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~ 713 (852)
T TIGR03346 641 -------ARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIM 713 (852)
T ss_pred -------HHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEE
Confidence 1222211111 11223444443333 48999999864 3466666655322 1 2344777
Q ss_pred EcCc
Q 041067 297 TTRN 300 (770)
Q Consensus 297 TTR~ 300 (770)
||.-
T Consensus 714 TSn~ 717 (852)
T TIGR03346 714 TSNL 717 (852)
T ss_pred eCCc
Confidence 7764
No 194
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.01 E-value=5.7e-05 Score=66.49 Aligned_cols=109 Identities=19% Similarity=0.280 Sum_probs=78.9
Q ss_pred CCcEEEecCCCCCCccCCccc-----cCccEEeccCcCccccCccccc-CCCCCEEeccCCCCCCCCCcccCCCCCCcEE
Q 041067 631 FLTKLNLSGCSKLKRLPEISS-----GNISWLFLRETAIEELPSSIER-LHRLGYLDLLDCKRLKSLPRSLWMLKSLGVL 704 (770)
Q Consensus 631 ~L~~L~L~~~~~l~~lp~~~~-----~~L~~L~l~~~~i~~lp~~i~~-l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L 704 (770)
.+..++|++|. +..+++... ..|+..+|++|.++.+|..+.. ++.++.|++++|. +..+|..+..++.|+.|
T Consensus 28 E~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSL 105 (177)
T ss_pred Hhhhcccccch-hhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhc
Confidence 46678888886 333443222 5677788888888888887754 4578888888876 56788888888888888
Q ss_pred EeecCCCCcccCcccCCCCCCcEEEccCCCCcccchhh
Q 041067 705 NLSGCSNLQRLPECLAQFSSPIILNLAKTNIERIPKSI 742 (770)
Q Consensus 705 ~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp~~l 742 (770)
+++.|+ +...|.-+-.+.+|-.|+..+|....+|..+
T Consensus 106 Nl~~N~-l~~~p~vi~~L~~l~~Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 106 NLRFNP-LNAEPRVIAPLIKLDMLDSPENARAEIDVDL 142 (177)
T ss_pred ccccCc-cccchHHHHHHHhHHHhcCCCCccccCcHHH
Confidence 888765 3456666666788888888888777776553
No 195
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.01 E-value=0.022 Score=67.71 Aligned_cols=172 Identities=17% Similarity=0.219 Sum_probs=95.4
Q ss_pred CCCcccchHHHHHHHHhhcC-----------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccC
Q 041067 161 KNKLVGVESKVEEIESILGV-----------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRS 229 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 229 (770)
-..+.|.+..++++.+.+.. +-...+-|.++|++|+|||++|+++++.....| +.....+
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~~~----- 522 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRGPE----- 522 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEehHH-----
Confidence 34678988888888776642 112345689999999999999999999865433 1111111
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHH-HHHHCCCcEEEEEeCCCChH--------------hHHHHHhcccCC--CCCc
Q 041067 230 GGLSCLQQKLLSNLLKHKNVMPFIDLI-FRRLSRMKVLIVFDDVTCLS--------------QLQSLIGSLYWL--TPVS 292 (770)
Q Consensus 230 ~~~~~l~~~ll~~~~~~~~~~~~~~~l-~~~L~~kr~LlVLDdv~~~~--------------~~~~l~~~~~~~--~~gs 292 (770)
++....++ ....+..+ ...-+..+.+|++|+++... ....++..+... ..+-
T Consensus 523 ---------l~~~~vGe--se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 523 ---------ILSKWVGE--SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred ---------HhhcccCc--HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 11111100 01111122 22223567899999986421 123344443322 2344
Q ss_pred eEEEEcCchhhhhh-----cCcceEEEeCccChHHHHHHHHHhccCCCchh----HHHHhhHhcCCCHHH
Q 041067 293 RIIITTRNKQVLRN-----WGVRKIYEMKALEYHHAIELFIMKYAQGVPLA----LKVLGCFLYEREKEV 353 (770)
Q Consensus 293 ~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~glPLa----l~~~g~~L~~~~~~~ 353 (770)
.||.||...+.... -..+..+.++..+.++..++|. ....+.|++ +..+|....+.+..+
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~-~~~~~~~~~~~~~l~~la~~t~g~sgad 660 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFK-IHTRSMPLAEDVDLEELAEMTEGYTGAD 660 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHH-HHhcCCCCCccCCHHHHHHHcCCCCHHH
Confidence 56667765544321 1345788899999999998885 233445543 455555544444333
No 196
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.00 E-value=0.027 Score=64.25 Aligned_cols=159 Identities=14% Similarity=0.138 Sum_probs=88.8
Q ss_pred CCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHH
Q 041067 159 DNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQK 238 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (770)
..-.+++|.+...+.+...+..+. -.+.+-++|..|+||||+|+.++..+-..-... .+.+ +.-...+.
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~------~~pC----~~C~~C~~ 81 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD------GEPC----NECEICKA 81 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCC----CccHHHHH
Confidence 344579999999999999986543 245677899999999999999998753110000 0000 00000011
Q ss_pred HHHH-------HhcCC-CCcchHHHHHHHH-----CCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEE-EcCchh
Q 041067 239 LLSN-------LLKHK-NVMPFIDLIFRRL-----SRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIII-TTRNKQ 302 (770)
Q Consensus 239 ll~~-------~~~~~-~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Iiv-TTR~~~ 302 (770)
+... +.... ...+.+..+.+.. .+++-++|+|+++.. ..+..|+..+........+|+ ||....
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~k 161 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHK 161 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhh
Confidence 1000 00000 0001122222221 345668899999864 457777776654444555554 444444
Q ss_pred hhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 303 VLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 303 v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+... ......+++.+++.++....+.
T Consensus 162 i~~tI~SRc~~~~f~~~~~~ei~~~L~ 188 (559)
T PRK05563 162 IPATILSRCQRFDFKRISVEDIVERLK 188 (559)
T ss_pred CcHHHHhHheEEecCCCCHHHHHHHHH
Confidence 4332 2234678899999988877765
No 197
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.99 E-value=0.0086 Score=58.43 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=27.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
+++|.++|+.|+||||.+.+++.+.+.+-..+..++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 468999999999999999998887665534445554
No 198
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.99 E-value=0.004 Score=71.11 Aligned_cols=52 Identities=25% Similarity=0.337 Sum_probs=42.5
Q ss_pred CCCCCCcccchHHHHHHHHhhcCCC---CCeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 158 RDNKNKLVGVESKVEEIESILGVES---KDVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 158 ~~~~~~~vGr~~~~~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
|...++++|-++.++++..++.... ...+++.|+|++|+||||+++.++..+
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4456679999999999999986432 234679999999999999999999865
No 199
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.98 E-value=0.004 Score=62.08 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=30.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
.++|+|..|.||||+++.+.......|+.+.+++
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 5889999999999999999999999997777665
No 200
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.00047 Score=68.64 Aligned_cols=176 Identities=20% Similarity=0.202 Sum_probs=95.7
Q ss_pred ccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCC--CCCCCCC-CcccccccccCCCCccccccc---
Q 041067 501 FTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPL--KSLPSNL-SAEKLMLLEVPDSDIEQLWDC--- 574 (770)
Q Consensus 501 ~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l--~~lp~~~-~~~~L~~L~l~~~~i~~l~~~--- 574 (770)
+.+|+.|++|+++.|.+.. .++.+| ....+|+.|.+.|..+ +...+.. .++.+++|+|+.|+..++-..
T Consensus 93 le~lP~l~~LNls~N~L~s----~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c 167 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSS----DIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNC 167 (418)
T ss_pred HhcCccceEeeccCCcCCC----ccccCc-ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccc
Confidence 5678888888888888776 566666 5567888888877543 3333332 245666676666655543110
Q ss_pred cc-cCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc--
Q 041067 575 VK-HYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS-- 651 (770)
Q Consensus 575 ~~-~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~-- 651 (770)
.. .-+.+++|.+..| +..+.++-|+... .++++..+.+..|+ ++......+
T Consensus 168 ~e~~s~~v~tlh~~~c------------------~~~~w~~~~~l~r-------~Fpnv~sv~v~e~P-lK~~s~ek~se 221 (418)
T KOG2982|consen 168 IEDWSTEVLTLHQLPC------------------LEQLWLNKNKLSR-------IFPNVNSVFVCEGP-LKTESSEKGSE 221 (418)
T ss_pred ccccchhhhhhhcCCc------------------HHHHHHHHHhHHh-------hcccchheeeecCc-ccchhhcccCC
Confidence 00 0011222222222 1111122222111 24455566665554 222111111
Q ss_pred --cCccEEeccCcCccccC--cccccCCCCCEEeccCCCCCCCCC------cccCCCCCCcEEEee
Q 041067 652 --GNISWLFLRETAIEELP--SSIERLHRLGYLDLLDCKRLKSLP------RSLWMLKSLGVLNLS 707 (770)
Q Consensus 652 --~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~L~~~~~~~~lp------~~l~~l~~L~~L~l~ 707 (770)
+.+..|+|+.+++.... ..+..++.|..|.+++++.+..+- --++.|++++.|+=+
T Consensus 222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 34556777777776443 246788899999999887654332 135778888888754
No 201
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.97 E-value=0.04 Score=57.80 Aligned_cols=149 Identities=14% Similarity=0.136 Sum_probs=87.2
Q ss_pred HHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHh-CC-------------------CCceEEEEecchhhccCC
Q 041067 171 VEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKIS-GD-------------------FEGSCFLENVREESQRSG 230 (770)
Q Consensus 171 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~-------------------f~~~~~~~~~~~~~~~~~ 230 (770)
.+.+...+..+ .-...+-++|+.|+||+++|+.++..+- .+ .+...|+.... ....-
T Consensus 12 ~~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I- 88 (319)
T PRK06090 12 WQNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI- 88 (319)
T ss_pred HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC-
Confidence 34455555322 2255788999999999999999988642 11 11111221000 00000
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHH-----CCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEcCch-h
Q 041067 231 GLSCLQQKLLSNLLKHKNVMPFIDLIFRRL-----SRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITTRNK-Q 302 (770)
Q Consensus 231 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~-~ 302 (770)
.+ +.+..+.+.+ .+.+=++|+|+++.. .....++..+....+++.+|++|.+. .
T Consensus 89 ~v------------------dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~ 150 (319)
T PRK06090 89 TV------------------EQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKR 150 (319)
T ss_pred CH------------------HHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhh
Confidence 11 2222233333 234457888998764 35777888777667777777666654 4
Q ss_pred hhhhc-CcceEEEeCccChHHHHHHHH----------HhccCCCchhHH
Q 041067 303 VLRNW-GVRKIYEMKALEYHHAIELFI----------MKYAQGVPLALK 340 (770)
Q Consensus 303 v~~~~-~~~~~~~l~~L~~~ea~~Lf~----------~~~~~glPLal~ 340 (770)
++... .....+.+.+++.+++.+.+. +..++|.|+...
T Consensus 151 lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~~~~~~~l~l~~G~p~~A~ 199 (319)
T PRK06090 151 LLPTIVSRCQQWVVTPPSTAQAMQWLKGQGITVPAYALKLNMGSPLKTL 199 (319)
T ss_pred ChHHHHhcceeEeCCCCCHHHHHHHHHHcCCchHHHHHHHcCCCHHHHH
Confidence 55443 335789999999999988875 344566665443
No 202
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.97 E-value=0.0034 Score=66.44 Aligned_cols=99 Identities=13% Similarity=0.110 Sum_probs=59.0
Q ss_pred HHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC-CceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCc
Q 041067 172 EEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDF-EGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVM 250 (770)
Q Consensus 172 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~ 250 (770)
.++++.+..-. .-..+.|+|.+|+|||||++.+++.+..+. +..+++.-+.+. ...+..+.+.+...+.....+.
T Consensus 121 ~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER---~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 121 MRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDER---PEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred HhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCC---CCCHHHHHHHHhhhEEeecCCC
Confidence 33555554221 223569999999999999999999876654 443333323332 2266777777766554322111
Q ss_pred ---------chHHHHHHHH--CCCcEEEEEeCCCC
Q 041067 251 ---------PFIDLIFRRL--SRMKVLIVFDDVTC 274 (770)
Q Consensus 251 ---------~~~~~l~~~L--~~kr~LlVLDdv~~ 274 (770)
.....+-+++ ++++++||+|++..
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 1112222333 47999999999854
No 203
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.97 E-value=0.0097 Score=60.88 Aligned_cols=164 Identities=15% Similarity=0.197 Sum_probs=89.3
Q ss_pred HHHHHHHHhhcCCC-CCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCc------eEEEEecchhhccCCCHHHHHHHHHH
Q 041067 169 SKVEEIESILGVES-KDVYSLGIWGIGGIGKTTIARAIFDKISGDFEG------SCFLENVREESQRSGGLSCLQQKLLS 241 (770)
Q Consensus 169 ~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~------~~~~~~~~~~~~~~~~~~~l~~~ll~ 241 (770)
+.++.+.+++..+. ...+-+.|+|.+|+|||++++++.+..-..++. ++.+. .-... +...+...|+.
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p-~~~~~Y~~IL~ 118 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEP-DERRFYSAILE 118 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCC-ChHHHHHHHHH
Confidence 34556666676443 346779999999999999999999875433332 22332 22333 77888888888
Q ss_pred HHhcCCCCc----chHHHHHHHHCC-CcEEEEEeCCCChH-----hHHHHHhcccCCC---CCceEEEEcCchhhhhhc-
Q 041067 242 NLLKHKNVM----PFIDLIFRRLSR-MKVLIVFDDVTCLS-----QLQSLIGSLYWLT---PVSRIIITTRNKQVLRNW- 307 (770)
Q Consensus 242 ~~~~~~~~~----~~~~~l~~~L~~-kr~LlVLDdv~~~~-----~~~~l~~~~~~~~---~gs~IivTTR~~~v~~~~- 307 (770)
.+...-... .....+.+.|+. .-=+||+|.+.+.- +-..++..++..+ .=+-|.|-|++..-+-..
T Consensus 119 ~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D 198 (302)
T PF05621_consen 119 ALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTD 198 (302)
T ss_pred HhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccC
Confidence 886543222 333344455554 33588999997632 2233333332222 223444555543222111
Q ss_pred ----CcceEEEeCccChHHHHHHHHHhccCCCch
Q 041067 308 ----GVRKIYEMKALEYHHAIELFIMKYAQGVPL 337 (770)
Q Consensus 308 ----~~~~~~~l~~L~~~ea~~Lf~~~~~~glPL 337 (770)
.-..++.++....++-..-|....-..+||
T Consensus 199 ~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPL 232 (302)
T PF05621_consen 199 PQLASRFEPFELPRWELDEEFRRLLASFERALPL 232 (302)
T ss_pred HHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCC
Confidence 112456666666555444333333333443
No 204
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.96 E-value=0.0052 Score=72.87 Aligned_cols=113 Identities=16% Similarity=0.231 Sum_probs=66.0
Q ss_pred CCCcccchHHHHHHHHhhcC------CCCC-eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHH
Q 041067 161 KNKLVGVESKVEEIESILGV------ESKD-VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLS 233 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~------~~~~-~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 233 (770)
...++|.+..++.+...+.. ..+. ..++.++|+.|+|||+||+.++..+.. ..+.++ .++..... .+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~---~~~~~d-~se~~~~~-~~~ 527 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV---HLERFD-MSEYMEKH-TVS 527 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC---CeEEEe-Cchhhhcc-cHH
Confidence 35689999999998887752 1122 456889999999999999999987632 223332 33322222 221
Q ss_pred HHHHHHHHHHhcCCCCc---chHHHHHHHHCCCc-EEEEEeCCCCh--HhHHHHHhccc
Q 041067 234 CLQQKLLSNLLKHKNVM---PFIDLIFRRLSRMK-VLIVFDDVTCL--SQLQSLIGSLY 286 (770)
Q Consensus 234 ~l~~~ll~~~~~~~~~~---~~~~~l~~~L~~kr-~LlVLDdv~~~--~~~~~l~~~~~ 286 (770)
.+.+..... +....+.+.++.++ -+++||+++.. +.++.++..+.
T Consensus 528 --------~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 528 --------RLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred --------HHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 122111111 22233445554444 59999999864 34555655543
No 205
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.95 E-value=0.0049 Score=73.72 Aligned_cols=129 Identities=17% Similarity=0.182 Sum_probs=72.7
Q ss_pred CCcccchHHHHHHHHhhcC-------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHH
Q 041067 162 NKLVGVESKVEEIESILGV-------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSC 234 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 234 (770)
..++|.+..++.+.+.+.. +.....++.++|+.|+|||.+|+.++..+-......+-+ +.++..... .+
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~-dmse~~~~~-~~-- 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITI-NMSEFQEAH-TV-- 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEE-eHHHhhhhh-hh--
Confidence 5789999999998887742 112245789999999999999999998764433322222 233222211 11
Q ss_pred HHHHHHHHHhcCCCCc---chHHHHHHHHCC-CcEEEEEeCCCChH--hHHHHHhcccCCC-----------CCceEEEE
Q 041067 235 LQQKLLSNLLKHKNVM---PFIDLIFRRLSR-MKVLIVFDDVTCLS--QLQSLIGSLYWLT-----------PVSRIIIT 297 (770)
Q Consensus 235 l~~~ll~~~~~~~~~~---~~~~~l~~~L~~-kr~LlVLDdv~~~~--~~~~l~~~~~~~~-----------~gs~IivT 297 (770)
..+.+..... +.-..+.+.++. ..-+|+||+++... .++.++..+..+. ..+-||+|
T Consensus 642 ------~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 642 ------SRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred ------ccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 1222211111 111223444443 44699999997543 4555655543221 34566677
Q ss_pred cCc
Q 041067 298 TRN 300 (770)
Q Consensus 298 TR~ 300 (770)
|.-
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 654
No 206
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0071 Score=69.67 Aligned_cols=116 Identities=18% Similarity=0.258 Sum_probs=75.7
Q ss_pred CCcccchHHHHHHHHhhcC-------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHH
Q 041067 162 NKLVGVESKVEEIESILGV-------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSC 234 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 234 (770)
..++|-+..+..+.+.+.. +..-..+....|+.|||||.||++++..+-+.=+.-+-++ .++...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MSEy~E------- 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-MSEYME------- 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-hHHHHH-------
Confidence 4699999999999887752 1222567777999999999999999988643323333332 333322
Q ss_pred HHHHHHHHHhcCCCCc---chHHHHHHHHCCCcE-EEEEeCCCC--hHhHHHHHhcccC
Q 041067 235 LQQKLLSNLLKHKNVM---PFIDLIFRRLSRMKV-LIVFDDVTC--LSQLQSLIGSLYW 287 (770)
Q Consensus 235 l~~~ll~~~~~~~~~~---~~~~~l~~~L~~kr~-LlVLDdv~~--~~~~~~l~~~~~~ 287 (770)
+.-.+.+.+.++.. +.-..+-+..++++| +|.||.|+. ++-.+-++..+..
T Consensus 563 --kHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 563 --KHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred --HHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 22344555544433 334556677778887 777999975 4556777766643
No 207
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.93 E-value=0.0059 Score=63.99 Aligned_cols=118 Identities=14% Similarity=0.199 Sum_probs=64.7
Q ss_pred cchHHHHHHHHhhcCCC--CCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHH
Q 041067 166 GVESKVEEIESILGVES--KDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNL 243 (770)
Q Consensus 166 Gr~~~~~~l~~~L~~~~--~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 243 (770)
++.........++..-. ....-+.|+|..|+|||.||.++++.+..+-..+.|+. ...+...+-...
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~-----------~~~l~~~lk~~~ 203 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH-----------FPEFIRELKNSI 203 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE-----------HHHHHHHHHHHH
Confidence 44444444444443211 13457899999999999999999999765444455554 223334433333
Q ss_pred hcCCCCcchHHHHHHHHCCCcEEEEEeCCCC--hHhHH--HHHhcc-c-CCCCCceEEEEcCc
Q 041067 244 LKHKNVMPFIDLIFRRLSRMKVLIVFDDVTC--LSQLQ--SLIGSL-Y-WLTPVSRIIITTRN 300 (770)
Q Consensus 244 ~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~~~--~l~~~~-~-~~~~gs~IivTTR~ 300 (770)
... . .....+.+. +-=||||||+.. ...|. .++..+ . ....+-.+|+||--
T Consensus 204 ~~~----~-~~~~l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 204 SDG----S-VKEKIDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred hcC----c-HHHHHHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 211 1 122222232 445899999954 33454 344433 1 22345567788763
No 208
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.92 E-value=0.02 Score=54.04 Aligned_cols=138 Identities=16% Similarity=0.203 Sum_probs=74.9
Q ss_pred cchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhC--------------------CCCceEEEEecchh
Q 041067 166 GVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISG--------------------DFEGSCFLENVREE 225 (770)
Q Consensus 166 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--------------------~f~~~~~~~~~~~~ 225 (770)
|-++..+.+.+.+..+ .-...+-++|..|+||+|+|..+++.+-. .++...|+... +.
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPD-KK 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETT-TS
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecc-cc
Confidence 4556677777777433 22456889999999999999999987421 12233333211 00
Q ss_pred hccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEcCchh-
Q 041067 226 SQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITTRNKQ- 302 (770)
Q Consensus 226 ~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~- 302 (770)
.... .+..+. ++...+.... ..+++=++|+||++.. +...+++..+.....++++|++|++.+
T Consensus 79 ~~~i-~i~~ir-~i~~~~~~~~------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 79 KKSI-KIDQIR-EIIEFLSLSP------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSK 144 (162)
T ss_dssp SSSB-SHHHHH-HHHHHCTSS-------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGG
T ss_pred cchh-hHHHHH-HHHHHHHHHH------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHH
Confidence 0001 222221 2222111100 1235568899999864 457888888877788999998888775
Q ss_pred hhhh-cCcceEEEeCccC
Q 041067 303 VLRN-WGVRKIYEMKALE 319 (770)
Q Consensus 303 v~~~-~~~~~~~~l~~L~ 319 (770)
+... ......+.+.+++
T Consensus 145 il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 145 ILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp S-HHHHTTSEEEEE----
T ss_pred ChHHHHhhceEEecCCCC
Confidence 3332 2334566666653
No 209
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.90 E-value=0.0069 Score=58.98 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=59.9
Q ss_pred chHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHH-H-hCCCCceEEEEecchhhccCC-CHHHHHH------
Q 041067 167 VESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDK-I-SGDFEGSCFLENVREESQRSG-GLSCLQQ------ 237 (770)
Q Consensus 167 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~-~-~~~f~~~~~~~~~~~~~~~~~-~~~~l~~------ 237 (770)
+..+-....+.|. +..+|.+.|++|.|||.||.+.+-+ + .+.|+..+++...-+....-. -.-.+.+
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 3444445555554 3458999999999999999999865 3 567888888764332211100 0001111
Q ss_pred -HHHHHHhcCCCCcchHHHHH----------HHHCCC---cEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEcCch
Q 041067 238 -KLLSNLLKHKNVMPFIDLIF----------RRLSRM---KVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITTRNK 301 (770)
Q Consensus 238 -~ll~~~~~~~~~~~~~~~l~----------~~L~~k---r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~ 301 (770)
-+...+.. .-.....+.+. .+++++ ..++|+|++.+. .++..++.. .+.|||||++=-..
T Consensus 81 ~p~~d~l~~-~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~ 156 (205)
T PF02562_consen 81 RPIYDALEE-LFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPS 156 (205)
T ss_dssp HHHHHHHTT-TS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE---
T ss_pred HHHHHHHHH-HhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCce
Confidence 11111111 00011122221 133443 479999999764 467766655 48999999985444
No 210
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.86 E-value=0.0048 Score=74.03 Aligned_cols=130 Identities=16% Similarity=0.198 Sum_probs=75.3
Q ss_pred CCcccchHHHHHHHHhhcC------CCCC-eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHH
Q 041067 162 NKLVGVESKVEEIESILGV------ESKD-VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSC 234 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~------~~~~-~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 234 (770)
..++|-+..++.+...+.. ..+. ...+.++|+.|+|||+||+.+++.+-..-...+-+. .++....+ .+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d-~s~~~~~~-~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD-MSEYMEKH-TVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE-chhccccc-cHHH
Confidence 5789999999999887742 1122 346778999999999999999987643322222222 33322222 2221
Q ss_pred HHHHHHHHHhcCCCCc---chHHHHHHHHCCCc-EEEEEeCCCCh--HhHHHHHhcccCC-----------CCCceEEEE
Q 041067 235 LQQKLLSNLLKHKNVM---PFIDLIFRRLSRMK-VLIVFDDVTCL--SQLQSLIGSLYWL-----------TPVSRIIIT 297 (770)
Q Consensus 235 l~~~ll~~~~~~~~~~---~~~~~l~~~L~~kr-~LlVLDdv~~~--~~~~~l~~~~~~~-----------~~gs~IivT 297 (770)
+.+..... +....+.+.++.++ -+++||+++.. +.++.++..+..+ -..+.||+|
T Consensus 587 --------l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 587 --------LIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred --------hcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 11111111 12234555565555 58889999864 3466666555332 134567777
Q ss_pred cCch
Q 041067 298 TRNK 301 (770)
Q Consensus 298 TR~~ 301 (770)
|...
T Consensus 659 sn~g 662 (821)
T CHL00095 659 SNLG 662 (821)
T ss_pred CCcc
Confidence 7643
No 211
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.85 E-value=0.00094 Score=59.78 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
+|+|.|++|+||||+|+.++++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999976
No 212
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.83 E-value=0.00044 Score=80.17 Aligned_cols=127 Identities=18% Similarity=0.188 Sum_probs=89.6
Q ss_pred CCCCcEEEecCCCCCC-ccCCccc---cCccEEeccCcCcc--ccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCc
Q 041067 629 LEFLTKLNLSGCSKLK-RLPEISS---GNISWLFLRETAIE--ELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLG 702 (770)
Q Consensus 629 l~~L~~L~L~~~~~l~-~lp~~~~---~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~ 702 (770)
-.+|++|++++...+. ..|...+ ++|+.|.+.+-.+. ++-.-..++++|..||+++++. ..+ .++++|++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-SNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc-cCc-HHHhccccHH
Confidence 3579999999855432 2233333 79999999876554 3334456889999999999874 444 6799999999
Q ss_pred EEEeecCCCCc-ccCcccCCCCCCcEEEccCCCCcccch-------hhhCCCCCcEEecccCc
Q 041067 703 VLNLSGCSNLQ-RLPECLAQFSSPIILNLAKTNIERIPK-------SISQLLMLRYLLLSYSE 757 (770)
Q Consensus 703 ~L~l~~~~~~~-~lp~~l~~l~~L~~L~L~~~~l~~lp~-------~l~~l~~L~~L~l~~c~ 757 (770)
+|.+.+-.... ..-..+-+|++|+.||+|......-+. .-..||+|+.||.++..
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 99998744332 222356789999999999766543331 22458999999998764
No 213
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.81 E-value=0.052 Score=60.55 Aligned_cols=148 Identities=15% Similarity=0.105 Sum_probs=81.2
Q ss_pred CCCcccchHHHHHHHHhhc---C-----CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCC-
Q 041067 161 KNKLVGVESKVEEIESILG---V-----ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGG- 231 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~---~-----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~- 231 (770)
-.++.|.+..++.+..... . +-...+-|.++|++|.|||.+|+++++.+.-.| +..+.........+
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l~~~~vGe 302 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKLFGGIVGE 302 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHhcccccCh
Confidence 3568888877766654321 1 112356789999999999999999999864332 22111111110000
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH----------h----HHHHHhcccCCCCCceEEEE
Q 041067 232 LSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS----------Q----LQSLIGSLYWLTPVSRIIIT 297 (770)
Q Consensus 232 ~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------~----~~~l~~~~~~~~~gs~IivT 297 (770)
-.. ...+.+...-...+++|++|+++..- . ...++..+.....+--||.|
T Consensus 303 se~----------------~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 303 SES----------------RMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred HHH----------------HHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 000 11111111123478999999996421 0 11222222222334446667
Q ss_pred cCchhhhh-----hcCcceEEEeCccChHHHHHHHH
Q 041067 298 TRNKQVLR-----NWGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 298 TR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
|.+.+... ....+..+.++.-+.++-.++|.
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~ 402 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFK 402 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHH
Confidence 76554321 12346788899999999999987
No 214
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.81 E-value=0.0022 Score=60.62 Aligned_cols=97 Identities=25% Similarity=0.199 Sum_probs=39.1
Q ss_pred EEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccC--cccCCCCCCcEEEccCC
Q 041067 656 WLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLP--ECLAQFSSPIILNLAKT 733 (770)
Q Consensus 656 ~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~L~~~ 733 (770)
.+|+++|.+..++ .+..++.|.+|.+++|.+...-|.--.-+++|++|.+.+|+. ..+- .-+..++.|++|.+-+|
T Consensus 46 ~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 46 AIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI-QELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred eecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcch-hhhhhcchhccCCccceeeecCC
Confidence 3333444444332 234444445555444443222222112234455555544332 1111 11334445555555555
Q ss_pred CCcccch----hhhCCCCCcEEecc
Q 041067 734 NIERIPK----SISQLLMLRYLLLS 754 (770)
Q Consensus 734 ~l~~lp~----~l~~l~~L~~L~l~ 754 (770)
+++.-.. .+..+|+|+.||+.
T Consensus 124 pv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 124 PVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred chhcccCceeEEEEecCcceEeehh
Confidence 5442211 23445555555554
No 215
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.014 Score=62.08 Aligned_cols=143 Identities=15% Similarity=0.120 Sum_probs=86.2
Q ss_pred Cccc-chHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhC-C--------------------CCceEEEE
Q 041067 163 KLVG-VESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISG-D--------------------FEGSCFLE 220 (770)
Q Consensus 163 ~~vG-r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~--------------------f~~~~~~~ 220 (770)
.++| -+..++.+...+..+. -....-++|..|+||||+|+.+.+.+-. . ++...++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 3566 6667777777775332 2456789999999999999999887522 1 11111111
Q ss_pred ecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH-----CCCcEEEEEeCCCChH--hHHHHHhcccCCCCCce
Q 041067 221 NVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRL-----SRMKVLIVFDDVTCLS--QLQSLIGSLYWLTPVSR 293 (770)
Q Consensus 221 ~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~ 293 (770)
.. .... .+ +.+..+.+.+ .+.+=++|+|+++... ..+.++..+....+++.
T Consensus 85 ~~---~~~i-~i------------------d~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~ 142 (329)
T PRK08058 85 PD---GQSI-KK------------------DQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTT 142 (329)
T ss_pred cc---cccC-CH------------------HHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCce
Confidence 00 0000 11 1111222222 2344578889987643 46677777766667777
Q ss_pred EEEEcCchh-hhhhc-CcceEEEeCccChHHHHHHHH
Q 041067 294 IIITTRNKQ-VLRNW-GVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 294 IivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+|++|.+.+ +.... .....+++.+++.++..+.+.
T Consensus 143 ~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 143 AILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred EEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHH
Confidence 777776543 33332 335789999999999887774
No 216
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.76 E-value=0.035 Score=66.34 Aligned_cols=52 Identities=25% Similarity=0.352 Sum_probs=40.7
Q ss_pred CCcccchHHHHHHHHhhcC----CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC
Q 041067 162 NKLVGVESKVEEIESILGV----ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDF 213 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 213 (770)
..++|.++.++++.+++.. +.....++.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 4588999999998886642 222345799999999999999999999876544
No 217
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.76 E-value=0.0016 Score=59.37 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=29.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCC-CCceEEEE
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGD-FEGSCFLE 220 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 220 (770)
--|+|.||+|+||||+++.+.+.++.. |...-|++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t 41 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFIT 41 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEe
Confidence 358999999999999999999998765 77665553
No 218
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.74 E-value=0.081 Score=56.15 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=47.1
Q ss_pred CcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEcCc-hhhhhhc-CcceEEEeCccChHHHHHHHH
Q 041067 263 MKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITTRN-KQVLRNW-GVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 263 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
++=++|+|+++.. .....++..+..-.+++.+|++|.+ ..++... .....+.+.+++.++..+.+.
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~ 201 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLA 201 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHH
Confidence 4457888999764 4578888887766777766655554 5555442 335789999999999988875
No 219
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.72 E-value=0.0068 Score=56.46 Aligned_cols=114 Identities=15% Similarity=0.126 Sum_probs=61.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHH-----h-----cCCCCc-----
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNL-----L-----KHKNVM----- 250 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~-----~-----~~~~~~----- 250 (770)
..|-|++-.|.||||+|...+-+...+=-.+.++-=.. ..... +-..+.+.+ ..+ . ...+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlK-g~~~~-gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLK-GGWKY-GELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeC-CCCcc-CHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 46888999999999999999988554433333322111 11111 222222222 000 0 000000
Q ss_pred --chHHHHHHHHCCCc-EEEEEeCCCCh-----HhHHHHHhcccCCCCCceEEEEcCchh
Q 041067 251 --PFIDLIFRRLSRMK-VLIVFDDVTCL-----SQLQSLIGSLYWLTPVSRIIITTRNKQ 302 (770)
Q Consensus 251 --~~~~~l~~~L~~kr-~LlVLDdv~~~-----~~~~~l~~~~~~~~~gs~IivTTR~~~ 302 (770)
...+..++.+.... =|+|||++... -+.+.+...+..-.++..+|+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 22334444554444 59999998543 234555555554566789999999864
No 220
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.71 E-value=0.049 Score=59.31 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=27.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEE
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFL 219 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 219 (770)
...+|.++|.+|+||||+|..++..++.+-..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV 134 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV 134 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 368999999999999999999987765442233433
No 221
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.70 E-value=0.006 Score=56.30 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987644
No 222
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.70 E-value=0.044 Score=64.98 Aligned_cols=53 Identities=23% Similarity=0.316 Sum_probs=42.1
Q ss_pred CCCcccchHHHHHHHHhhcC----CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC
Q 041067 161 KNKLVGVESKVEEIESILGV----ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDF 213 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 213 (770)
+...+|.++..++|.++|.. +......+.++|++|+||||+|+.++......|
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 35689999999999988863 112345799999999999999999998765443
No 223
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.025 Score=60.22 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=28.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
..++|+++|.+|+||||++..++..+..+=..+.++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3579999999999999999999987654423344443
No 224
>PRK06696 uridine kinase; Validated
Probab=96.64 E-value=0.0035 Score=62.90 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=36.1
Q ss_pred chHHHHHHHHhhcC-CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 167 VESKVEEIESILGV-ESKDVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 167 r~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
|++.+++|.+.+.. ......+|+|.|.+|.||||+|+.+...+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 55666777666643 34568899999999999999999999987543
No 225
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.64 E-value=0.0017 Score=68.31 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=40.9
Q ss_pred CcccchHHHHHHHHhhcCC----CCCeEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 163 KLVGVESKVEEIESILGVE----SKDVYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 163 ~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.++|.++.++++.+++... ....++++++|++|.||||||+.+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 7999999999999988642 23468899999999999999999998754
No 226
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.63 E-value=0.0021 Score=59.10 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.8
Q ss_pred EEEEecCCCcHHHHHHHHHHHH
Q 041067 188 LGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 188 v~I~G~gGiGKTtLA~~~~~~~ 209 (770)
|.++|.+|+|||+||+.+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 227
>PRK06762 hypothetical protein; Provisional
Probab=96.63 E-value=0.0095 Score=56.65 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=22.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
.+|.|.|++|+||||+|+.+.+++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999876
No 228
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.62 E-value=0.022 Score=62.47 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=25.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
.+.+|.++|.+|+||||.|..++..++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 47899999999999999999999887654
No 229
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.62 E-value=0.036 Score=64.56 Aligned_cols=177 Identities=14% Similarity=0.146 Sum_probs=90.7
Q ss_pred CcccchHHHHHHHHhhcCC----------CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCH
Q 041067 163 KLVGVESKVEEIESILGVE----------SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGL 232 (770)
Q Consensus 163 ~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 232 (770)
++.|.+...+++.+.+... ..-.+-|.|+|.+|.||||+|+.++......| +.+. ..+
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is-~~~-------- 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSD-------- 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe-hHH--------
Confidence 4567666666665544311 11134599999999999999999998765433 1111 111
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH----------------hHHHHHhcccCCC--CCceE
Q 041067 233 SCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS----------------QLQSLIGSLYWLT--PVSRI 294 (770)
Q Consensus 233 ~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~--~gs~I 294 (770)
+... ..+ .........+.......+++|++|+++... .+..++..+..+. .+.-+
T Consensus 221 --~~~~----~~g-~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~viv 293 (644)
T PRK10733 221 --FVEM----FVG-VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV 293 (644)
T ss_pred --hHHh----hhc-ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeE
Confidence 1000 000 000011112222233467899999986541 1233333333222 34445
Q ss_pred EEEcCchhhhhh-----cCcceEEEeCccChHHHHHHHHHhccCCCchh----HHHHhhHhcCCCHHHHHHHHH
Q 041067 295 IITTRNKQVLRN-----WGVRKIYEMKALEYHHAIELFIMKYAQGVPLA----LKVLGCFLYEREKEVWESAID 359 (770)
Q Consensus 295 ivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~glPLa----l~~~g~~L~~~~~~~w~~~l~ 359 (770)
|.||...+.... -..+..+.+...+.++..+++. .+....|++ +..++....+.+..+...+++
T Consensus 294 IaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~-~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~ 366 (644)
T PRK10733 294 IAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILK-VHMRRVPLAPDIDAAIIARGTPGFSGADLANLVN 366 (644)
T ss_pred EEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHH-HHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHH
Confidence 557776654322 1235677888888877777775 233344433 334444444444445444443
No 230
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.61 E-value=0.0074 Score=60.68 Aligned_cols=48 Identities=19% Similarity=0.249 Sum_probs=37.1
Q ss_pred HHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 173 EIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 173 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
.|.++|..+-..-.++.|+|.+|+|||++|.+++......-..++|++
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 344555434344678999999999999999999988766667788887
No 231
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.59 E-value=0.01 Score=69.69 Aligned_cols=111 Identities=14% Similarity=0.209 Sum_probs=65.3
Q ss_pred CCcccchHHHHHHHHhhcC------CCCC-eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHH
Q 041067 162 NKLVGVESKVEEIESILGV------ESKD-VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSC 234 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~------~~~~-~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 234 (770)
..++|-++.++.|...+.. ..+. ...+.++|++|+|||++|+.++...... .+.+ +.++..... .+
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~---~i~i-d~se~~~~~-~~-- 530 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIE---LLRF-DMSEYMERH-TV-- 530 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCC---cEEe-echhhcccc-cH--
Confidence 4589999999998887752 1122 4578999999999999999999877322 1222 233322222 11
Q ss_pred HHHHHHHHHhcCCCCc---chHHHHHHHHCCCc-EEEEEeCCCChH--hHHHHHhcc
Q 041067 235 LQQKLLSNLLKHKNVM---PFIDLIFRRLSRMK-VLIVFDDVTCLS--QLQSLIGSL 285 (770)
Q Consensus 235 l~~~ll~~~~~~~~~~---~~~~~l~~~L~~kr-~LlVLDdv~~~~--~~~~l~~~~ 285 (770)
..+.+..... +....+.+.++.++ -+|+||+++... .++.++..+
T Consensus 531 ------~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~l 581 (758)
T PRK11034 531 ------SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVM 581 (758)
T ss_pred ------HHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHH
Confidence 2222222111 11223444444444 699999998754 356665554
No 232
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.019 Score=58.33 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=49.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH----hCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKI----SGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRL 260 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~----~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L 260 (770)
-|+|.++|++|.|||+|.+++++++ .+.|.....+. . .-.++..+.+++-.+ ......++|.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE----i-----nshsLFSKWFsESgK--lV~kmF~kI~ELv 245 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE----I-----NSHSLFSKWFSESGK--LVAKMFQKIQELV 245 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE----E-----ehhHHHHHHHhhhhh--HHHHHHHHHHHHH
Confidence 6789999999999999999999974 34566666654 1 222333333332110 1114456667777
Q ss_pred CCCc--EEEEEeCCCC
Q 041067 261 SRMK--VLIVFDDVTC 274 (770)
Q Consensus 261 ~~kr--~LlVLDdv~~ 274 (770)
.++. +++.+|.|+.
T Consensus 246 ~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEVES 261 (423)
T ss_pred hCCCcEEEEEeHHHHH
Confidence 6655 5566798855
No 233
>PRK07667 uridine kinase; Provisional
Probab=96.55 E-value=0.0044 Score=60.54 Aligned_cols=42 Identities=24% Similarity=0.425 Sum_probs=32.9
Q ss_pred HHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 171 VEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 171 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
.+.+...+........+|+|.|.+|.||||+|+.+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345556665555566899999999999999999999987543
No 234
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.55 E-value=0.06 Score=56.70 Aligned_cols=151 Identities=11% Similarity=0.111 Sum_probs=81.5
Q ss_pred HHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC--CC-ceEEEEe-cch--hhccCCCHHHHHHHHHHHHh
Q 041067 171 VEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD--FE-GSCFLEN-VRE--ESQRSGGLSCLQQKLLSNLL 244 (770)
Q Consensus 171 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~-~~~~~~~-~~~--~~~~~~~~~~l~~~ll~~~~ 244 (770)
.+.+...+..+. -....-++|+.|+||+++|+.++..+-.. .. ..|=.|. .+. ..... ++..+.. ..
T Consensus 11 ~~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HP-D~~~i~p-----~~ 83 (325)
T PRK06871 11 YQQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHP-DFHILEP-----ID 83 (325)
T ss_pred HHHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC-CEEEEcc-----cc
Confidence 344555553221 24567789999999999999999874221 10 0000000 000 00000 1100000 00
Q ss_pred cCCCCcchHHHHHHHH-----CCCcEEEEEeCCCChH--hHHHHHhcccCCCCCceEEEEcCch-hhhhhc-CcceEEEe
Q 041067 245 KHKNVMPFIDLIFRRL-----SRMKVLIVFDDVTCLS--QLQSLIGSLYWLTPVSRIIITTRNK-QVLRNW-GVRKIYEM 315 (770)
Q Consensus 245 ~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~-~v~~~~-~~~~~~~l 315 (770)
+..-..+.+..+.+.+ .+++=++|+|+++... ....++..+....+++.+|++|.+. .++... .....+.+
T Consensus 84 ~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~ 163 (325)
T PRK06871 84 NKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLI 163 (325)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeC
Confidence 0000112222333333 2455678899998654 5777877777667777777777655 444442 33578999
Q ss_pred CccChHHHHHHHH
Q 041067 316 KALEYHHAIELFI 328 (770)
Q Consensus 316 ~~L~~~ea~~Lf~ 328 (770)
.++++++..+.+.
T Consensus 164 ~~~~~~~~~~~L~ 176 (325)
T PRK06871 164 HPPEEQQALDWLQ 176 (325)
T ss_pred CCCCHHHHHHHHH
Confidence 9999999887764
No 235
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.53 E-value=0.02 Score=53.91 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=28.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
++.|+|.+|+||||+|..+......+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999988766555666665
No 236
>PRK07261 topology modulation protein; Provisional
Probab=96.52 E-value=0.0097 Score=56.84 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
.|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998764
No 237
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.45 E-value=0.031 Score=59.58 Aligned_cols=142 Identities=18% Similarity=0.143 Sum_probs=80.0
Q ss_pred CcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCC---------------------ceEEEEe
Q 041067 163 KLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFE---------------------GSCFLEN 221 (770)
Q Consensus 163 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---------------------~~~~~~~ 221 (770)
.++|-+....++..+......-...+-++|++|+||||+|.++++.+..... ....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~- 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN- 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence 4667777778887777633333345999999999999999999998653221 111111
Q ss_pred cchhhccCCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH--hHHHHHhcccCCCCCceEEE
Q 041067 222 VREESQRSGG---LSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS--QLQSLIGSLYWLTPVSRIII 296 (770)
Q Consensus 222 ~~~~~~~~~~---~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~Iiv 296 (770)
.+... . .....+++........ ..+..-++++|+++... .-..+..........+++|+
T Consensus 81 ---~s~~~-~~~i~~~~vr~~~~~~~~~~------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il 144 (325)
T COG0470 81 ---PSDLR-KIDIIVEQVRELAEFLSESP------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFIL 144 (325)
T ss_pred ---ccccC-CCcchHHHHHHHHHHhccCC------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEE
Confidence 01111 1 1111122211111000 02456789999998754 35666666666677888888
Q ss_pred EcCch-hhhhhc-CcceEEEeCccChH
Q 041067 297 TTRNK-QVLRNW-GVRKIYEMKALEYH 321 (770)
Q Consensus 297 TTR~~-~v~~~~-~~~~~~~l~~L~~~ 321 (770)
+|.+. .+.... .....+.+.+.+..
T Consensus 145 ~~n~~~~il~tI~SRc~~i~f~~~~~~ 171 (325)
T COG0470 145 ITNDPSKILPTIRSRCQRIRFKPPSRL 171 (325)
T ss_pred EcCChhhccchhhhcceeeecCCchHH
Confidence 88743 333322 22456666663333
No 238
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.44 E-value=0.0061 Score=57.76 Aligned_cols=98 Identities=24% Similarity=0.328 Sum_probs=49.2
Q ss_pred eeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc---cCccEEeccCcCccccCc--ccccCCCCCEEec
Q 041067 608 LVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS---GNISWLFLRETAIEELPS--SIERLHRLGYLDL 682 (770)
Q Consensus 608 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~---~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~L 682 (770)
...+||++|. +..++. +..++.|.+|.+.+|. +..+.+... ++|+.|.+.+|++.++.+ .+..+++|++|.+
T Consensus 44 ~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cceecccccc-hhhccc-CCCccccceEEecCCc-ceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 3445555444 222221 3345555555555544 223322222 455556666666654432 2455667777777
Q ss_pred cCCCCCCCCC----cccCCCCCCcEEEeecC
Q 041067 683 LDCKRLKSLP----RSLWMLKSLGVLNLSGC 709 (770)
Q Consensus 683 ~~~~~~~~lp----~~l~~l~~L~~L~l~~~ 709 (770)
-+|+... .+ --+..+++|++||..+.
T Consensus 121 l~Npv~~-k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEH-KKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhc-ccCceeEEEEecCcceEeehhhh
Confidence 6665322 11 12566777777777653
No 239
>PRK10867 signal recognition particle protein; Provisional
Probab=96.44 E-value=0.13 Score=56.41 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=25.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
.+.+|.++|.+|+||||.|..++..+..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36899999999999999999998876555
No 240
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.42 E-value=0.12 Score=54.34 Aligned_cols=166 Identities=16% Similarity=0.196 Sum_probs=86.3
Q ss_pred HHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC--CCce-EEEEecchhhccCCCHHHHHHHHHHHHhcC
Q 041067 170 KVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD--FEGS-CFLENVREESQRSGGLSCLQQKLLSNLLKH 246 (770)
Q Consensus 170 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~-~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~ 246 (770)
..+.+...+..+ .-...+.++|+.|+||+++|..++..+-.. .++. |=.+..-...... |+..+.. ..+-.+.
T Consensus 12 ~~~~l~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HP-D~~~i~~--~p~~~~~ 87 (319)
T PRK08769 12 AYDQTVAALDAG-RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHP-DLQLVSF--IPNRTGD 87 (319)
T ss_pred HHHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCC-CEEEEec--CCCcccc
Confidence 344555555322 224568899999999999999999874221 1100 0000000000000 1000000 0000000
Q ss_pred C--C--CcchHHHHHHHHC-----CCcEEEEEeCCCChH--hHHHHHhcccCCCCCceEEEEcCch-hhhhhc-CcceEE
Q 041067 247 K--N--VMPFIDLIFRRLS-----RMKVLIVFDDVTCLS--QLQSLIGSLYWLTPVSRIIITTRNK-QVLRNW-GVRKIY 313 (770)
Q Consensus 247 ~--~--~~~~~~~l~~~L~-----~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~-~v~~~~-~~~~~~ 313 (770)
+ . ..+.+..+.+.+. +++=++|+|+++... .-..++..+....+++.+|++|.+. .++... .....+
T Consensus 88 k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i 167 (319)
T PRK08769 88 KLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRL 167 (319)
T ss_pred cccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEe
Confidence 0 0 0122223333332 455688999998654 4666777666656777777776654 444333 335788
Q ss_pred EeCccChHHHHHHHH------------HhccCCCchhH
Q 041067 314 EMKALEYHHAIELFI------------MKYAQGVPLAL 339 (770)
Q Consensus 314 ~l~~L~~~ea~~Lf~------------~~~~~glPLal 339 (770)
.+.+++.+++.+.+. +..++|.|+..
T Consensus 168 ~~~~~~~~~~~~~L~~~~~~~~~a~~~~~l~~G~p~~A 205 (319)
T PRK08769 168 EFKLPPAHEALAWLLAQGVSERAAQEALDAARGHPGLA 205 (319)
T ss_pred eCCCcCHHHHHHHHHHcCCChHHHHHHHHHcCCCHHHH
Confidence 899999998887775 45566666644
No 241
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.41 E-value=0.066 Score=52.35 Aligned_cols=102 Identities=20% Similarity=0.314 Sum_probs=63.0
Q ss_pred CCCCCcccchHHHHHHHHhhc--CCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHH
Q 041067 159 DNKNKLVGVESKVEEIESILG--VESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQ 236 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 236 (770)
.+-..++|.|...+.+.+=-. ...-..--|-+||.-|.||+.|++++.+.+....-.-+=|+ .. ++..
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~---k~-----dl~~-- 126 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD---KE-----DLAT-- 126 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc---HH-----HHhh--
Confidence 444579999999888765221 01112335889999999999999999999877655522221 11 2221
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHH--CCCcEEEEEeCCC---ChHhHHHHHhccc
Q 041067 237 QKLLSNLLKHKNVMPFIDLIFRRL--SRMKVLIVFDDVT---CLSQLQSLIGSLY 286 (770)
Q Consensus 237 ~~ll~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~---~~~~~~~l~~~~~ 286 (770)
...+.+.| ..+||.|..||.. ..+....+...+.
T Consensus 127 ----------------Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~Le 165 (287)
T COG2607 127 ----------------LPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALE 165 (287)
T ss_pred ----------------HHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhc
Confidence 11222223 3688999999983 2334566665553
No 242
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.41 E-value=0.0037 Score=62.35 Aligned_cols=54 Identities=20% Similarity=0.413 Sum_probs=43.3
Q ss_pred CCCCCcccchHHHHHHHHhhcC---CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 159 DNKNKLVGVESKVEEIESILGV---ESKDVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
..-.+|||.++..+++.-.+.. .....-.|.++|++|.||||||.-+++.....
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 3445799999999998877752 22346789999999999999999999987654
No 243
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.41 E-value=0.027 Score=52.98 Aligned_cols=124 Identities=20% Similarity=0.259 Sum_probs=67.7
Q ss_pred HHHHHHHhccceeEeecCCccCchhhHHHHHHHHHhhccCCcEEEeEEEEecCCccccccCcHHHHHHHHHHHhhhhhHH
Q 041067 32 SLVNVIEASAISVIVFSEGYASSRSCLDELVKILECKKEYAQIVIPFFYRVDPSDVRNQTGSFGDSFSKLEERLKENTEK 111 (770)
Q Consensus 32 ~l~~ai~~s~~~ivv~s~~y~~s~~cl~El~~i~~~~~~~~~~v~pvf~~v~p~~vr~~~~~~~~~f~~~~~~~~~~~~~ 111 (770)
++.+|++++++.+.|..-....+.. -.++.+.+.. ...+..++-|+=++|-.+ .+.
T Consensus 1 ~~~~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~-~~~~~p~ilVlNKiDl~~----------------------~~~ 56 (157)
T cd01858 1 ELYKVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKK-EKPHKHLIFVLNKCDLVP----------------------TWV 56 (157)
T ss_pred ChhHhhhhCCEEEEEEECCCCcccc-CHHHHHHHHh-ccCCCCEEEEEEchhcCC----------------------HHH
Confidence 4678999999999998855432222 2455555542 222345677776665311 112
Q ss_pred HHHHHHHHHHhhccccccccccchhhHHHHhHhhhhhccccccccCCCCCCCcccchHHHHHHHHhhcCCC-CCeEEEEE
Q 041067 112 LRSWRKALKEAASLSGFLSLNIRHESEFINEVGNDILKRLDEVFRPRDNKNKLVGVESKVEEIESILGVES-KDVYSLGI 190 (770)
Q Consensus 112 v~~w~~al~~~a~~~g~~~~~~~~e~~~i~~i~~~i~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vv~I 190 (770)
+..|..++.+......+.. ....-.|.+.-++.+.+.+.... .....|++
T Consensus 57 ~~~~~~~~~~~~~~~~~~i-----------------------------Sa~~~~~~~~L~~~l~~~~~~~~~~~~~~v~~ 107 (157)
T cd01858 57 TARWVKILSKEYPTIAFHA-----------------------------SINNPFGKGSLIQLLRQFSKLHSDKKQISVGF 107 (157)
T ss_pred HHHHHHHHhcCCcEEEEEe-----------------------------eccccccHHHHHHHHHHHHhhhccccceEEEE
Confidence 3456555443211000000 00111245555555555443211 22456889
Q ss_pred EecCCCcHHHHHHHHHHH
Q 041067 191 WGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 191 ~G~gGiGKTtLA~~~~~~ 208 (770)
+|++|+|||||...+..+
T Consensus 108 ~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 108 IGYPNVGKSSIINTLRSK 125 (157)
T ss_pred EeCCCCChHHHHHHHhcC
Confidence 999999999999998753
No 244
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.015 Score=62.64 Aligned_cols=126 Identities=25% Similarity=0.265 Sum_probs=74.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCC
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRM 263 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~k 263 (770)
....+.+.|.+|+|||+||..++. ...|+.+-.++ .... - ++..-.+-. ..........+..
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiS---pe~m-i-G~sEsaKc~-----------~i~k~F~DAYkS~ 598 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIIS---PEDM-I-GLSESAKCA-----------HIKKIFEDAYKSP 598 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeC---hHHc-c-CccHHHHHH-----------HHHHHHHHhhcCc
Confidence 466788899999999999999986 46788665553 1100 0 111100000 0111122233445
Q ss_pred cEEEEEeCCCChHhH------------HHHHhcccCCCC-Cce--EEEEcCchhhhhhcCc----ceEEEeCccCh-HHH
Q 041067 264 KVLIVFDDVTCLSQL------------QSLIGSLYWLTP-VSR--IIITTRNKQVLRNWGV----RKIYEMKALEY-HHA 323 (770)
Q Consensus 264 r~LlVLDdv~~~~~~------------~~l~~~~~~~~~-gs~--IivTTR~~~v~~~~~~----~~~~~l~~L~~-~ea 323 (770)
--.||+||++..-+| +.++..+....| |-| |+-||-...++..|+. ...+.++.++. ++.
T Consensus 599 lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~ 678 (744)
T KOG0741|consen 599 LSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQL 678 (744)
T ss_pred ceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHH
Confidence 578999999765544 444444433333 334 4457888888888764 35788888877 555
Q ss_pred HHHH
Q 041067 324 IELF 327 (770)
Q Consensus 324 ~~Lf 327 (770)
.+.+
T Consensus 679 ~~vl 682 (744)
T KOG0741|consen 679 LEVL 682 (744)
T ss_pred HHHH
Confidence 5554
No 245
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.39 E-value=0.011 Score=61.85 Aligned_cols=30 Identities=37% Similarity=0.589 Sum_probs=26.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 183 KDVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
.-++.++|||++|.|||.+|++++......
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 347889999999999999999999987554
No 246
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.38 E-value=0.079 Score=57.21 Aligned_cols=25 Identities=28% Similarity=0.155 Sum_probs=22.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
..++.++|.+|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999764
No 247
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.016 Score=64.72 Aligned_cols=75 Identities=27% Similarity=0.339 Sum_probs=47.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCC-CCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCC
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGD-FEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSR 262 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~ 262 (770)
...-|-|.|..|+|||+||+++++.+... +-.+.+++ ++.. ... .++++++.+ ...+.+.+..
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~-Cs~l-~~~-~~e~iQk~l-------------~~vfse~~~~ 493 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVS-CSTL-DGS-SLEKIQKFL-------------NNVFSEALWY 493 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEe-chhc-cch-hHHHHHHHH-------------HHHHHHHHhh
Confidence 34568999999999999999999987643 22333333 2111 111 344443332 1233455667
Q ss_pred CcEEEEEeCCCC
Q 041067 263 MKVLIVFDDVTC 274 (770)
Q Consensus 263 kr~LlVLDdv~~ 274 (770)
.+-+|||||++.
T Consensus 494 ~PSiIvLDdld~ 505 (952)
T KOG0735|consen 494 APSIIVLDDLDC 505 (952)
T ss_pred CCcEEEEcchhh
Confidence 899999999954
No 248
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.37 E-value=0.15 Score=50.53 Aligned_cols=159 Identities=19% Similarity=0.190 Sum_probs=81.5
Q ss_pred cccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHH
Q 041067 164 LVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNL 243 (770)
Q Consensus 164 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 243 (770)
.++...+.+.+...-..-+++-+++.++|.-|.|||+++|++....-+.=-..+.+. .+.. ....+...+..++
T Consensus 30 ~~~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~-s~~~~~~ai~~~l 103 (269)
T COG3267 30 DYWAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTL-SDATLLEAIVADL 103 (269)
T ss_pred hhhhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----Ccch-hHHHHHHHHHHHh
Confidence 333334444443333223445679999999999999999955544332212222332 1122 5556666776666
Q ss_pred hcCCCCc--chHHHHHHHH-----CCCc-EEEEEeCCCChH--hHHHHHhc--c-cCCCCCceEEEEcCch-------hh
Q 041067 244 LKHKNVM--PFIDLIFRRL-----SRMK-VLIVFDDVTCLS--QLQSLIGS--L-YWLTPVSRIIITTRNK-------QV 303 (770)
Q Consensus 244 ~~~~~~~--~~~~~l~~~L-----~~kr-~LlVLDdv~~~~--~~~~l~~~--~-~~~~~gs~IivTTR~~-------~v 303 (770)
...+... .....+.+.| +++| +.++.|+..+.. .++.+.-. + ..+..--+|+..-..+ .+
T Consensus 104 ~~~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~ 183 (269)
T COG3267 104 ESQPKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPV 183 (269)
T ss_pred ccCccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHH
Confidence 5533322 2233333322 4677 999999986643 33333222 1 1111111233322111 01
Q ss_pred hhhc-CcceE-EEeCccChHHHHHHHH
Q 041067 304 LRNW-GVRKI-YEMKALEYHHAIELFI 328 (770)
Q Consensus 304 ~~~~-~~~~~-~~l~~L~~~ea~~Lf~ 328 (770)
.... ....+ |++.+++.++...++.
T Consensus 184 l~e~~~R~~ir~~l~P~~~~~t~~yl~ 210 (269)
T COG3267 184 LRELEQRIDIRIELPPLTEAETGLYLR 210 (269)
T ss_pred HHhhhheEEEEEecCCcChHHHHHHHH
Confidence 1111 11234 9999999998888876
No 249
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.35 E-value=0.11 Score=58.61 Aligned_cols=59 Identities=15% Similarity=0.289 Sum_probs=35.7
Q ss_pred HHHHHCCCcEEEEEeCCCC---hHhHHHHHhcccCCCCCceEEEEcCchhhhhhcCcceEEEeCc
Q 041067 256 IFRRLSRMKVLIVFDDVTC---LSQLQSLIGSLYWLTPVSRIIITTRNKQVLRNWGVRKIYEMKA 317 (770)
Q Consensus 256 l~~~L~~kr~LlVLDdv~~---~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l~~ 317 (770)
+-..+-...=++|||.--+ .+..+.+...+..+ +| .||++|.++....... ..++.+++
T Consensus 450 La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~G-tvl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 450 LAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EG-TVLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred HHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CC-eEEEEeCCHHHHHhhc-ceEEEEcC
Confidence 3344456788999996533 23334444443322 23 4899999998887655 45666653
No 250
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.35 E-value=0.0029 Score=58.18 Aligned_cols=107 Identities=20% Similarity=0.220 Sum_probs=58.7
Q ss_pred ccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHh
Q 041067 165 VGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLL 244 (770)
Q Consensus 165 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 244 (770)
||....++++.+.+..-......|.|+|..|+||+++|+.++..-..... .|+. + ... .. . .+++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~--~~~~-~-~~~-~~-~-----~~~l~~-- 67 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANG--PFIV-I-DCA-SL-P-----AELLEQ-- 67 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS---CCC-C-CHH-CT-C-----HHHHHH--
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCC--CeEE-e-chh-hC-c-----HHHHHH--
Confidence 56667777777666533333446899999999999999999886333111 1211 0 000 01 1 112211
Q ss_pred cCCCCcchHHHHHHHHCCCcEEEEEeCCCChH--hHHHHHhcccCC-CCCceEEEEcCch
Q 041067 245 KHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS--QLQSLIGSLYWL-TPVSRIIITTRNK 301 (770)
Q Consensus 245 ~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~-~~gs~IivTTR~~ 301 (770)
-+.--++++|++... ....+...+... ....|+|.||+..
T Consensus 68 -----------------a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 68 -----------------AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp -----------------CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred -----------------cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 133457799998754 334444444322 5677999998854
No 251
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.35 E-value=0.0017 Score=63.97 Aligned_cols=104 Identities=22% Similarity=0.205 Sum_probs=56.0
Q ss_pred cCccEEeccCcCccccCcccccCCCCCEEeccCC--CCCCCCCcccCCCCCCcEEEeecCCCC--cccCcccCCCCCCcE
Q 041067 652 GNISWLFLRETAIEELPSSIERLHRLGYLDLLDC--KRLKSLPRSLWMLKSLGVLNLSGCSNL--QRLPECLAQFSSPII 727 (770)
Q Consensus 652 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~--~~~~~lp~~l~~l~~L~~L~l~~~~~~--~~lp~~l~~l~~L~~ 727 (770)
..|+.|++.+..++.+- .+..|++|++|.++.| ...+.++.....+++|++|++++|.+- ..++ .+..+.+|..
T Consensus 43 ~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhh
Confidence 35555555554444332 3445667777777777 444555555556677777777776432 1111 2345556667
Q ss_pred EEccCCCCcccch----hhhCCCCCcEEecccCc
Q 041067 728 LNLAKTNIERIPK----SISQLLMLRYLLLSYSE 757 (770)
Q Consensus 728 L~L~~~~l~~lp~----~l~~l~~L~~L~l~~c~ 757 (770)
|++.+|..+.+-. .+.-+++|++|+-.++.
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 7777666543221 12334556665554443
No 252
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.33 E-value=0.011 Score=58.75 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=32.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 183 KDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
..-.++.|+|.+|+|||++|.+++......-..++|++
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34578999999999999999999988766667888987
No 253
>PRK14974 cell division protein FtsY; Provisional
Probab=96.32 E-value=0.056 Score=57.21 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=25.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
...+|+++|++|+||||++..++..+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999998876554
No 254
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.19 E-value=0.09 Score=55.91 Aligned_cols=138 Identities=12% Similarity=0.117 Sum_probs=81.4
Q ss_pred HHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC---------------------CCceEEEEecchhhcc
Q 041067 170 KVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD---------------------FEGSCFLENVREESQR 228 (770)
Q Consensus 170 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~~~~~~~~~~~~ 228 (770)
.-+++...+..+ .-...+-+.|..|+||+|+|.+++..+-.. .+...++..... ...
T Consensus 10 ~~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~ 87 (334)
T PRK07993 10 DYEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KSS 87 (334)
T ss_pred HHHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-ccc
Confidence 345555555422 225577899999999999999999875211 111111110000 000
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH-----CCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEcCch
Q 041067 229 SGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRL-----SRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITTRNK 301 (770)
Q Consensus 229 ~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~ 301 (770)
- .+ +.+..+.+.+ .+++=++|+|+++.. .....++..+..-.+++.+|++|.+.
T Consensus 88 I-~i------------------dqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~ 148 (334)
T PRK07993 88 L-GV------------------DAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREP 148 (334)
T ss_pred C-CH------------------HHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 0 11 2233333333 245568899998764 35677777776667777777776654
Q ss_pred -hhhhhc-CcceEEEeCccChHHHHHHHH
Q 041067 302 -QVLRNW-GVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 302 -~v~~~~-~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
.++... .....+.+.+++.+++.+.+.
T Consensus 149 ~~lLpTIrSRCq~~~~~~~~~~~~~~~L~ 177 (334)
T PRK07993 149 ARLLATLRSRCRLHYLAPPPEQYALTWLS 177 (334)
T ss_pred hhChHHHHhccccccCCCCCHHHHHHHHH
Confidence 455442 334678999999998887763
No 255
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.19 E-value=0.085 Score=55.84 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=39.6
Q ss_pred EEEEeCCCChH--hHHHHHhcccCCCCCceEEEEcCchh-hhhhc-CcceEEEeCccChHHHHHHHH
Q 041067 266 LIVFDDVTCLS--QLQSLIGSLYWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 266 LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
++|+|+++..+ .-..++..+.....+..+|++|.+.+ +.... .....+.+.+++.+++.+.+.
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLR 182 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHH
Confidence 44568876543 44555555544445666777777654 44332 234688899999999887774
No 256
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.19 E-value=0.0041 Score=56.13 Aligned_cols=22 Identities=50% Similarity=0.856 Sum_probs=20.5
Q ss_pred EEEEecCCCcHHHHHHHHHHHH
Q 041067 188 LGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 188 v~I~G~gGiGKTtLA~~~~~~~ 209 (770)
|+|.|++|+||||+|+++..+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999885
No 257
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.16 E-value=0.019 Score=57.31 Aligned_cols=49 Identities=20% Similarity=0.347 Sum_probs=36.5
Q ss_pred HHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 172 EEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 172 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
..|..+|..+=..-.++.|.|.+|+||||+|.+++.....+-..++|++
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455555433344678999999999999999999988765555667775
No 258
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.14 E-value=0.14 Score=56.41 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=27.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh--CCCCceEEEE
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKIS--GDFEGSCFLE 220 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~~ 220 (770)
-+++.++|++|+||||++..++.... ..-..+.+++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 35899999999999999999987765 3334455554
No 259
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.14 E-value=0.025 Score=58.30 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=29.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 183 KDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
...++|+++|++|+||||.+..++..+...-..+.+++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34689999999999999999999987765533444443
No 260
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.13 E-value=0.017 Score=58.49 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=33.4
Q ss_pred HHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC------CCceEEEE
Q 041067 174 IESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD------FEGSCFLE 220 (770)
Q Consensus 174 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~ 220 (770)
+..+|..+-..-.++.|+|.+|+||||+|..++-..... -..++|++
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 444454333445789999999999999999998653222 36778887
No 261
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.13 E-value=0.023 Score=57.08 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=35.3
Q ss_pred HHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC------CceEEEE
Q 041067 173 EIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDF------EGSCFLE 220 (770)
Q Consensus 173 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~ 220 (770)
.+..+|..+-..-.++.|+|.+|+|||++|..++....... ..++|+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 34455543334456899999999999999999987765444 5667876
No 262
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.10 E-value=0.042 Score=61.60 Aligned_cols=183 Identities=14% Similarity=0.203 Sum_probs=109.5
Q ss_pred CCCCcccchHHHHHHHHhhcC--CC-CCeEEEEEEecCCCcHHHHHHHHHHHHh-----CCCCceEEEEecchhhccCCC
Q 041067 160 NKNKLVGVESKVEEIESILGV--ES-KDVYSLGIWGIGGIGKTTIARAIFDKIS-----GDFEGSCFLENVREESQRSGG 231 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~--~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~-----~~f~~~~~~~~~~~~~~~~~~ 231 (770)
.+..+-+|+.+..+|...+.. .. ..-+.+-|.|.+|.|||..+..|.+.+. +.-+...|+. +.. ..-. .
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yve-INg-m~l~-~ 470 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVE-ING-LRLA-S 470 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEE-Ecc-eeec-C
Confidence 556688999999999988852 22 2345899999999999999999998643 2233333332 111 1112 5
Q ss_pred HHHHHHHHHHHHhcCCCCc-chHHHHHHHHC-----CCcEEEEEeCCCChHh--HHHHHhcccCC-CCCceEEEEcCc--
Q 041067 232 LSCLQQKLLSNLLKHKNVM-PFIDLIFRRLS-----RMKVLIVFDDVTCLSQ--LQSLIGSLYWL-TPVSRIIITTRN-- 300 (770)
Q Consensus 232 ~~~l~~~ll~~~~~~~~~~-~~~~~l~~~L~-----~kr~LlVLDdv~~~~~--~~~l~~~~~~~-~~gs~IivTTR~-- 300 (770)
...+...|...+.++.... ...+.+..+.. .+..++++|+++..-. -+-+-..+.|- .++||++|.+=.
T Consensus 471 ~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 471 PREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 5667777777776654433 55666666664 3458888998865432 22333345553 478887775421
Q ss_pred hhhhh---------hcCcceEEEeCccChHHHHHHHHHhccCCC----chhHHHHhhHhc
Q 041067 301 KQVLR---------NWGVRKIYEMKALEYHHAIELFIMKYAQGV----PLALKVLGCFLY 347 (770)
Q Consensus 301 ~~v~~---------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~gl----PLal~~~g~~L~ 347 (770)
.+... .+| -..+..++-+.++-.+.. ..+..|+ +-|+..++.-.+
T Consensus 551 mdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii-~~RL~~~~~f~~~aielvarkVA 608 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEII-SARLKGLDAFENKAIELVARKVA 608 (767)
T ss_pred ccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHH-HHhhcchhhcchhHHHHHHHHHH
Confidence 11111 111 245667777777766666 3334443 455666665444
No 263
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.10 E-value=0.14 Score=56.80 Aligned_cols=176 Identities=18% Similarity=0.190 Sum_probs=101.8
Q ss_pred CCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHh-C---CCC--ceEEEEecchhhccCCCHHH
Q 041067 161 KNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKIS-G---DFE--GSCFLENVREESQRSGGLSC 234 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~---~f~--~~~~~~~~~~~~~~~~~~~~ 234 (770)
-+++||-+.....|...+..+. -..-....|.-|+||||+||.++..+- . ..+ ..|..| .+..... .+.
T Consensus 15 F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C--k~I~~g~-~~D- 89 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC--KEINEGS-LID- 89 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh--HhhhcCC-ccc-
Confidence 3467999999999999986443 133456689999999999999998641 1 111 112111 0010000 000
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHC--------CCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEcCch-hh
Q 041067 235 LQQKLLSNLLKHKNVMPFIDLIFRRLS--------RMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITTRNK-QV 303 (770)
Q Consensus 235 l~~~ll~~~~~~~~~~~~~~~l~~~L~--------~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~-~v 303 (770)
+. ++.. ....+++.+++... ++.=+.|+|.|+-. ..|..++..+..-.+.-..|..|++. .+
T Consensus 90 vi-----EiDa--ASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Ki 162 (515)
T COG2812 90 VI-----EIDA--ASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKI 162 (515)
T ss_pred ch-----hhhh--hhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcC
Confidence 00 0000 01123333333332 34458899999764 46899988886655565555555544 44
Q ss_pred hhh-cCcceEEEeCccChHHHHHHHH----HhccCCCchhHHHHhhHhcC
Q 041067 304 LRN-WGVRKIYEMKALEYHHAIELFI----MKYAQGVPLALKVLGCFLYE 348 (770)
Q Consensus 304 ~~~-~~~~~~~~l~~L~~~ea~~Lf~----~~~~~glPLal~~~g~~L~~ 348 (770)
... ....+.|.++.++.++-...+. -+...--+-|+..++..-.+
T Consensus 163 p~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G 212 (515)
T COG2812 163 PNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG 212 (515)
T ss_pred chhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC
Confidence 433 3446789999999998777775 33334445666666655433
No 264
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.10 E-value=0.0072 Score=58.15 Aligned_cols=36 Identities=33% Similarity=0.662 Sum_probs=31.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
..+|.+.|+.|.||||+|+.++..+...+...+++.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 458999999999999999999999887777777774
No 265
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.09 E-value=0.069 Score=58.45 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=23.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.+.++.++|.+|+||||.|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999999988764
No 266
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.06 E-value=0.00038 Score=72.57 Aligned_cols=184 Identities=20% Similarity=0.188 Sum_probs=99.2
Q ss_pred ccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcc--cCccCCCCCCCcEEEecCCCCCCccCCcc---
Q 041067 576 KHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKR--LPSRIFNLEFLTKLNLSGCSKLKRLPEIS--- 650 (770)
Q Consensus 576 ~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~~--- 650 (770)
..+++|++|++++|....+. ........+..|+.+.+.||...+. +-..=+...-+-.+++..|..++......
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~-gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGN-GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HhhhhHHHhhhccCchhhcC-cchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 45666777777776554221 0001122334455555555543211 11111122334444555554333222111
Q ss_pred -ccCccEEeccCc-CccccC--cccccCCCCCEEeccCCCCCCCCCc--ccCCCCCCcEEEeecCCCCc--ccCcccCCC
Q 041067 651 -SGNISWLFLRET-AIEELP--SSIERLHRLGYLDLLDCKRLKSLPR--SLWMLKSLGVLNLSGCSNLQ--RLPECLAQF 722 (770)
Q Consensus 651 -~~~L~~L~l~~~-~i~~lp--~~i~~l~~L~~L~L~~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~--~lp~~l~~l 722 (770)
...|+.|+.+++ .+...+ .-..+.++|+.|.+.+|...+..-- --.+.+.|+.|++.+|.... .+-.--.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 034555555543 222111 1134568899999999986554321 12467889999998876543 233334678
Q ss_pred CCCcEEEccCCCCc------ccchhhhCCCCCcEEecccCccCC
Q 041067 723 SSPIILNLAKTNIE------RIPKSISQLLMLRYLLLSYSESLQ 760 (770)
Q Consensus 723 ~~L~~L~L~~~~l~------~lp~~l~~l~~L~~L~l~~c~~L~ 760 (770)
+.|+.|.++.|.+- .+...-..+..|+.+.+++|+.++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 89999999988643 233444667789999999998553
No 267
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.0071 Score=67.86 Aligned_cols=150 Identities=19% Similarity=0.294 Sum_probs=87.9
Q ss_pred CCCcccchHHHHHHHHhhcC----CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHH
Q 041067 161 KNKLVGVESKVEEIESILGV----ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQ 236 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 236 (770)
+.+.+|.++-.++|.+.|.- +.-+-.+++++|++|||||.|++.+++.....|-... +-.+++.+.
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s-LGGvrDEAE--------- 391 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS-LGGVRDEAE--------- 391 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe-cCccccHHH---------
Confidence 45788999999999998863 2223469999999999999999999998876654322 111222211
Q ss_pred HHHHHHHhcCCCCc------chHHHHHHHHCCCcEEEEEeCCCChH------hHHHHHhcccC-----CC--------CC
Q 041067 237 QKLLSNLLKHKNVM------PFIDLIFRRLSRMKVLIVFDDVTCLS------QLQSLIGSLYW-----LT--------PV 291 (770)
Q Consensus 237 ~~ll~~~~~~~~~~------~~~~~l~~~L~~kr~LlVLDdv~~~~------~~~~l~~~~~~-----~~--------~g 291 (770)
+.+..... ..++.+++. +.+.-+++||.++... .-.+++..+.- |. .=
T Consensus 392 ------IRGHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 392 ------IRGHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred ------hccccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccch
Confidence 11111111 122222222 3566799999997543 23334333311 11 12
Q ss_pred ceEE-EEcCch-h-h-hhhcCcceEEEeCccChHHHHHHH
Q 041067 292 SRII-ITTRNK-Q-V-LRNWGVRKIYEMKALEYHHAIELF 327 (770)
Q Consensus 292 s~Ii-vTTR~~-~-v-~~~~~~~~~~~l~~L~~~ea~~Lf 327 (770)
|.|+ |+|-|. + + +..+....++++.+-+++|-.+.-
T Consensus 465 S~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IA 504 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIA 504 (782)
T ss_pred hheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHH
Confidence 5554 444432 1 1 122345678999999999876654
No 268
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.014 Score=64.19 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=40.8
Q ss_pred CCCcccchHHHHHHHHhhcCC----------CCCeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 161 KNKLVGVESKVEEIESILGVE----------SKDVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
-.++=|.++.+.++.+++..- -.-.+-|.++|++|.|||.||++++.+..-.
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP 250 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP 250 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc
Confidence 456889999999998877531 1225668999999999999999999986543
No 269
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.04 E-value=0.0061 Score=59.67 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=23.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
+|+|.|.+|+||||+|+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999987643
No 270
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.04 E-value=0.034 Score=57.09 Aligned_cols=102 Identities=15% Similarity=0.140 Sum_probs=61.9
Q ss_pred HHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHh-cCCC
Q 041067 170 KVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLL-KHKN 248 (770)
Q Consensus 170 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~-~~~~ 248 (770)
.++.+..++... -.+|.|.|..|.||||+++.+.+.+...-...+.+++..+... . +.. ++. ....
T Consensus 68 ~~~~l~~~~~~~---~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~-~-~~~--------q~~v~~~~ 134 (264)
T cd01129 68 NLEIFRKLLEKP---HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI-P-GIN--------QVQVNEKA 134 (264)
T ss_pred HHHHHHHHHhcC---CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC-C-Cce--------EEEeCCcC
Confidence 444455555322 3479999999999999999998876542223444443222211 1 110 010 0111
Q ss_pred CcchHHHHHHHHCCCcEEEEEeCCCChHhHHHHHhc
Q 041067 249 VMPFIDLIFRRLSRMKVLIVFDDVTCLSQLQSLIGS 284 (770)
Q Consensus 249 ~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~ 284 (770)
.......++..|+..+=.|+++++.+.+....+...
T Consensus 135 ~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 135 GLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred CcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 224567788888888889999999998876555444
No 271
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.03 E-value=0.032 Score=51.58 Aligned_cols=103 Identities=18% Similarity=0.217 Sum_probs=55.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcE
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKV 265 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~ 265 (770)
.+++|.|..|.|||||++.+..... ...+.+++.......-.+ . + .......-.+-+.+-.++-
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~~~-~-----------l---S~G~~~rv~laral~~~p~ 90 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYFE-Q-----------L---SGGEKMRLALAKLLLENPN 90 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEEEc-c-----------C---CHHHHHHHHHHHHHhcCCC
Confidence 4799999999999999999986532 234445543211111001 0 0 0001112223444556677
Q ss_pred EEEEeCCCC---hHhHHHHHhcccCCCCCceEEEEcCchhhhhh
Q 041067 266 LIVFDDVTC---LSQLQSLIGSLYWLTPVSRIIITTRNKQVLRN 306 (770)
Q Consensus 266 LlVLDdv~~---~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~ 306 (770)
++++|+... ....+.+...+... +..||++|.+.+....
T Consensus 91 illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 91 LLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 889998642 33333333333322 2468888887765543
No 272
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.99 E-value=0.03 Score=57.22 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=22.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 188 LGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 188 v~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
|.++|++|+||||+|+++.......
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 7899999999999999999887543
No 273
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.98 E-value=0.043 Score=53.06 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
+|.|+|++|+||||+|+.++.+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999865
No 274
>PRK04296 thymidine kinase; Provisional
Probab=95.97 E-value=0.022 Score=55.40 Aligned_cols=108 Identities=15% Similarity=0.033 Sum_probs=58.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCC------CCcchHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHK------NVMPFIDLIFRR 259 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~------~~~~~~~~l~~~ 259 (770)
.++.|+|..|.||||+|..++.+...+-..+.++... ..... +...+ ...+.... ...+....+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~--~d~~~-~~~~i----~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA--IDDRY-GEGKV----VSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc--ccccc-cCCcE----ecCCCCcccceEeCChHHHHHHHHh-
Confidence 3678899999999999999999876554444444210 00011 11111 11111000 01122333333
Q ss_pred HCCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEcCchhh
Q 041067 260 LSRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITTRNKQV 303 (770)
Q Consensus 260 L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~v 303 (770)
..++.-+||+|.+.-. ++..++...+. ..|..||+|.++.+.
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTDF 118 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCccc
Confidence 2234468999998643 33444444432 467889999998543
No 275
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.95 E-value=0.049 Score=55.05 Aligned_cols=48 Identities=17% Similarity=0.092 Sum_probs=34.6
Q ss_pred HHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 173 EIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 173 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
.+.++|..+-..-.++.|+|.+|+||||+|.++......+=..++|+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 345555444445678999999999999999999765433445677776
No 276
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.93 E-value=0.0022 Score=63.17 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=7.9
Q ss_pred CceeEEEEcCCCCC
Q 041067 534 GEVKYLHWYGYPLK 547 (770)
Q Consensus 534 ~~Lr~L~l~~~~l~ 547 (770)
..+..++++||.+.
T Consensus 30 d~~~evdLSGNtig 43 (388)
T COG5238 30 DELVEVDLSGNTIG 43 (388)
T ss_pred cceeEEeccCCccc
Confidence 45556666666543
No 277
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.89 E-value=0.073 Score=49.53 Aligned_cols=24 Identities=42% Similarity=0.609 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
+|.|+|.+|.||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998764
No 278
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.88 E-value=0.021 Score=61.25 Aligned_cols=110 Identities=14% Similarity=0.123 Sum_probs=66.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE-ecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCc
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE-NVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMK 264 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr 264 (770)
..|.|.|..|.||||+.+.+.+.+.......++.. +-.+... . ... .+..+.............++..|+..+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~-~-~~~----~~i~q~evg~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVH-R-NKR----SLINQREVGLDTLSFANALRAALREDP 196 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhc-c-Ccc----ceEEccccCCCCcCHHHHHHHhhccCC
Confidence 57999999999999999999988766555555543 1111100 0 000 000000001112245677888888899
Q ss_pred EEEEEeCCCChHhHHHHHhcccCCCCCceEEEEcCchhhh
Q 041067 265 VLIVFDDVTCLSQLQSLIGSLYWLTPVSRIIITTRNKQVL 304 (770)
Q Consensus 265 ~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~ 304 (770)
=.|++|.+.+.+.+....... ..|-.|+.|+...+..
T Consensus 197 d~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 197 DVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNSAA 233 (343)
T ss_pred CEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCCHH
Confidence 999999999988776544432 3455566666554443
No 279
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.87 E-value=0.0089 Score=66.31 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=41.2
Q ss_pred CcccchHHHHHHHHhhc----CCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 163 KLVGVESKVEEIESILG----VESKDVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 163 ~~vGr~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
+++|.++.+++|.+.|. .-...-+++.++|++|+||||||+.+++-....
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 58999999999999882 223456799999999999999999999865443
No 280
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.87 E-value=0.036 Score=54.25 Aligned_cols=117 Identities=17% Similarity=0.191 Sum_probs=58.2
Q ss_pred HHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCC
Q 041067 170 KVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNV 249 (770)
Q Consensus 170 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~ 249 (770)
..+.+...+..+ -+++.|.|.+|.||||+++.+...+...=..++++. . -......+...... ..
T Consensus 6 Q~~a~~~~l~~~---~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a-p---------T~~Aa~~L~~~~~~--~a 70 (196)
T PF13604_consen 6 QREAVRAILTSG---DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA-P---------TNKAAKELREKTGI--EA 70 (196)
T ss_dssp HHHHHHHHHHCT---CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE-S---------SHHHHHHHHHHHTS---E
T ss_pred HHHHHHHHHhcC---CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC-C---------cHHHHHHHHHhhCc--ch
Confidence 344455555432 347888999999999999999887665533333333 1 11122222222211 00
Q ss_pred cchHHHHHHHH---------CCCcEEEEEeCCCChH--hHHHHHhcccCCCCCceEEEEcCchhh
Q 041067 250 MPFIDLIFRRL---------SRMKVLIVFDDVTCLS--QLQSLIGSLYWLTPVSRIIITTRNKQV 303 (770)
Q Consensus 250 ~~~~~~l~~~L---------~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~v 303 (770)
......+...- ..++-+||+|++...+ ++..+..... ..|+|+|+.=-..+.
T Consensus 71 ~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~QL 133 (196)
T PF13604_consen 71 QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPNQL 133 (196)
T ss_dssp EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TTSH
T ss_pred hhHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcchh
Confidence 01000000000 1233599999987544 5666666543 257888877544433
No 281
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.82 E-value=0.011 Score=57.62 Aligned_cols=30 Identities=33% Similarity=0.551 Sum_probs=27.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 183 KDVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
.++.+|||.|.+|.||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 457899999999999999999999998766
No 282
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.81 E-value=0.48 Score=51.00 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=31.3
Q ss_pred chHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHH-HHHHH
Q 041067 167 VESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIA-RAIFD 207 (770)
Q Consensus 167 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA-~~~~~ 207 (770)
|.+.+++|..||.+..+ ..|.|.|+-|.||+.|+ .++..
T Consensus 1 R~e~~~~L~~wL~e~~~--TFIvV~GPrGSGK~elV~d~~L~ 40 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN--TFIVVQGPRGSGKRELVMDHVLK 40 (431)
T ss_pred CchHHHHHHHHHhcCCC--eEEEEECCCCCCccHHHHHHHHh
Confidence 56778999999975554 47999999999999999 55543
No 283
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.79 E-value=0.013 Score=54.35 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=29.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
.+|-|.|.+|.||||||+++..++...-..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 57889999999999999999999887766667664
No 284
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.72 E-value=0.066 Score=51.24 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFD 207 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~ 207 (770)
.+++|+|..|.|||||.+.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4799999999999999998863
No 285
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.71 E-value=0.0067 Score=59.95 Aligned_cols=41 Identities=32% Similarity=0.290 Sum_probs=21.9
Q ss_pred CCCCccceeEEeccCC--CCCcccCccCCCCCCCcEEEecCCC
Q 041067 601 LMPRLNKLVLLNLRGS--KSLKRLPSRIFNLEFLTKLNLSGCS 641 (770)
Q Consensus 601 ~~~~L~~L~~L~L~~~--~~l~~lp~~i~~l~~L~~L~L~~~~ 641 (770)
.++.|++|+.|.++.| .....++...-.+++|++|++++|.
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 4555566666666666 3333344333344666666666654
No 286
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.69 E-value=0.006 Score=53.98 Aligned_cols=29 Identities=31% Similarity=0.504 Sum_probs=21.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhCCCCce
Q 041067 188 LGIWGIGGIGKTTIARAIFDKISGDFEGS 216 (770)
Q Consensus 188 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~ 216 (770)
|-|+|.+|+||||+|+.++..+...|..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 67999999999999999999988777643
No 287
>PTZ00301 uridine kinase; Provisional
Probab=95.66 E-value=0.01 Score=58.42 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=25.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCC
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFE 214 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 214 (770)
..+|||.|.+|.||||||+.+.+++...+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~ 32 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCG 32 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcC
Confidence 468999999999999999999988755443
No 288
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.65 E-value=0.0092 Score=47.28 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
+|+|.|..|+||||+|+.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 289
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.64 E-value=0.011 Score=58.72 Aligned_cols=27 Identities=41% Similarity=0.655 Sum_probs=24.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 183 KDVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
....+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999886
No 290
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.61 E-value=0.089 Score=49.95 Aligned_cols=125 Identities=18% Similarity=0.092 Sum_probs=60.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecch---hhccC-CCHHHHHHHHHHHHhcCCC-CcchHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVRE---ESQRS-GGLSCLQQKLLSNLLKHKN-VMPFIDLIFRRL 260 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~---~~~~~-~~~~~l~~~ll~~~~~~~~-~~~~~~~l~~~L 260 (770)
.+++|.|..|.|||||++.++..... ..+.+++...+. ..+.. ..-..+.+.+.......-. .....-.+.+.+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral 106 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLL 106 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHH
Confidence 37999999999999999999865322 122232211000 01110 0001222222110000000 012223445556
Q ss_pred CCCcEEEEEeCCCC---hHhHHHHHhcccCCCCCceEEEEcCchhhhhhcCcceEEEe
Q 041067 261 SRMKVLIVFDDVTC---LSQLQSLIGSLYWLTPVSRIIITTRNKQVLRNWGVRKIYEM 315 (770)
Q Consensus 261 ~~kr~LlVLDdv~~---~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 315 (770)
-.++=++++|+-.. ....+.+...+... +..||++|.+.+... ..+.++.+
T Consensus 107 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 107 LHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh--hCCEEEEE
Confidence 66777888997632 22233333333222 356888888876653 23455554
No 291
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.61 E-value=0.038 Score=55.48 Aligned_cols=119 Identities=20% Similarity=0.164 Sum_probs=67.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhc--cCCCHHHHHHHHHHHHhcCC------CCc----ch-
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQ--RSGGLSCLQQKLLSNLLKHK------NVM----PF- 252 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~~l~~~ll~~~~~~~------~~~----~~- 252 (770)
.++||+|-.|.||||+|+.+..-....... +++.. .+... .. .......+++..+.... +.. +.
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~pt~G~-i~f~g-~~i~~~~~~-~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEEPTSGE-ILFEG-KDITKLSKE-ERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcCCCCce-EEEcC-cchhhcchh-HHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 479999999999999999998755443333 33321 11100 11 22233344444433211 111 22
Q ss_pred HHHHHHHHCCCcEEEEEeCCCC------hHhHHHHHhcccCCCCCceEEEEcCchhhhhhcC
Q 041067 253 IDLIFRRLSRMKVLIVFDDVTC------LSQLQSLIGSLYWLTPVSRIIITTRNKQVLRNWG 308 (770)
Q Consensus 253 ~~~l~~~L~~kr~LlVLDdv~~------~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~ 308 (770)
.-.|.+.|.-++-++|.|..-+ ..+.-.++..+.. ..|-..+..|.+-.++..+.
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhhc
Confidence 2346677888999999997533 2334444443322 34556788888887776643
No 292
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.59 E-value=0.014 Score=63.89 Aligned_cols=45 Identities=20% Similarity=0.075 Sum_probs=38.7
Q ss_pred CcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 163 KLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 163 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
.++||++.++.+...+..+. .|.|.|.+|+|||++|+.+......
T Consensus 21 ~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHHhcc
Confidence 59999999999988876554 4899999999999999999987543
No 293
>PRK03839 putative kinase; Provisional
Probab=95.58 E-value=0.0096 Score=57.49 Aligned_cols=24 Identities=33% Similarity=0.642 Sum_probs=21.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.|.|.|++|+||||+|+.++++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999864
No 294
>PRK04040 adenylate kinase; Provisional
Probab=95.58 E-value=0.013 Score=56.78 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=23.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.+|+|+|++|+||||+++.+...+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999874
No 295
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.56 E-value=0.12 Score=52.99 Aligned_cols=168 Identities=20% Similarity=0.265 Sum_probs=97.7
Q ss_pred CCCCcccchHHHHHHHHhhcCC--CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccC-CCHHHHH
Q 041067 160 NKNKLVGVESKVEEIESILGVE--SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRS-GGLSCLQ 236 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~l~ 236 (770)
+-..++|-.++...+..++... .++-.-|.|+|+.|.|||+|......+ .+.|.-...+.......+.. ..+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 3446899999999988888521 122335889999999999998888776 33455445544333332221 0234444
Q ss_pred HHHHHHHhcCCC----CcchHHHHHHHHCC------CcEEEEEeCCCChH----h--HHHHHhcc-cCCCCCceEEEEcC
Q 041067 237 QKLLSNLLKHKN----VMPFIDLIFRRLSR------MKVLIVFDDVTCLS----Q--LQSLIGSL-YWLTPVSRIIITTR 299 (770)
Q Consensus 237 ~~ll~~~~~~~~----~~~~~~~l~~~L~~------kr~LlVLDdv~~~~----~--~~~l~~~~-~~~~~gs~IivTTR 299 (770)
+++..+...... -.+....+.+.|+. -++.+|+|.++-.. | +-.+...- ..-.|-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 554444332211 11555666666642 35899998876432 1 22222221 12356778889999
Q ss_pred chh-------hhhhcCcceEEEeCccChHHHHHHHH
Q 041067 300 NKQ-------VLRNWGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 300 ~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
-.- |-....-..++-++.++-++-..++.
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r 216 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYR 216 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHH
Confidence 642 22223333477778888888887775
No 296
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.55 E-value=0.087 Score=51.12 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=59.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCC---CC-ce-EEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGD---FE-GS-CFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRL 260 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~---f~-~~-~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L 260 (770)
.-..|.|++|+|||||.+.+++-++.. |- .. +.++.-++......+..+.....--++.. .......++...-
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld--~cpk~~gmmmaIr 215 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLD--PCPKAEGMMMAIR 215 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcc--cchHHHHHHHHHH
Confidence 346789999999999999999865433 33 22 33332222211111222222211112221 1112222222222
Q ss_pred CCCcEEEEEeCCCChHhHHHHHhcccCCCCCceEEEEcC
Q 041067 261 SRMKVLIVFDDVTCLSQLQSLIGSLYWLTPVSRIIITTR 299 (770)
Q Consensus 261 ~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR 299 (770)
...+=.+|.|.+...++..++...+ ..|-+++.|..
T Consensus 216 sm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaH 251 (308)
T COG3854 216 SMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAH 251 (308)
T ss_pred hcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeec
Confidence 3467799999999888877777765 56777777754
No 297
>PRK00625 shikimate kinase; Provisional
Probab=95.53 E-value=0.01 Score=56.58 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.|.++||+|+||||+|+.+.++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998764
No 298
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.53 E-value=0.029 Score=58.81 Aligned_cols=48 Identities=21% Similarity=0.210 Sum_probs=36.1
Q ss_pred HHHHhhc-CCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 173 EIESILG-VESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 173 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
.|..+|. .+=..-+++-|+|.+|+||||||.+++......-..++|++
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 3444554 33344678999999999999999999887666666778886
No 299
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.015 Score=65.04 Aligned_cols=53 Identities=30% Similarity=0.391 Sum_probs=44.3
Q ss_pred CCCcccchHHHHHHHHhhcC----CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC
Q 041067 161 KNKLVGVESKVEEIESILGV----ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDF 213 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 213 (770)
+++-+|+++-.++|.+.+.- ++-+-.+++.+|++|||||.+|+.++..+...|
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 45688999999999998863 344567999999999999999999999876554
No 300
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.51 E-value=0.041 Score=56.46 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=21.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
..|.|+|.+|.||||+|+++...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~ 28 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK 28 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence 468999999999999999999887653
No 301
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.51 E-value=0.029 Score=53.32 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=23.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCC
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFE 214 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 214 (770)
+.|-+.|.+|+||||+|++++..+++.-.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~ 30 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIW 30 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhh
Confidence 45778999999999999999987655433
No 302
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.50 E-value=0.052 Score=56.85 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=35.8
Q ss_pred HHHHhhc-CCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 173 EIESILG-VESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 173 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
.|..+|. .+=..-+++-|+|.+|+||||||.++.......-..++|++
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 3444553 33345678999999999999999999887666656677886
No 303
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=95.50 E-value=0.14 Score=47.12 Aligned_cols=52 Identities=17% Similarity=0.119 Sum_probs=34.5
Q ss_pred hHHHHHHHHhccceeEeecCCccCchhhHHHHHHHHHhhccCCcEEEeEEEEec
Q 041067 30 SKSLVNVIEASAISVIVFSEGYASSRSCLDELVKILECKKEYAQIVIPFFYRVD 83 (770)
Q Consensus 30 ~~~l~~ai~~s~~~ivv~s~~y~~s~~cl~El~~i~~~~~~~~~~v~pvf~~v~ 83 (770)
..++.++|+++++.+.|+.-....+.+. .++.+.+.... .+..++-|+=++|
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k~~iivlNK~D 53 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRKKNILLLNKAD 53 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCCcEEEEEechh
Confidence 3578999999999999999766555553 25556555321 2345666666664
No 304
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.50 E-value=0.11 Score=48.99 Aligned_cols=112 Identities=17% Similarity=0.105 Sum_probs=60.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCC-CCce--EEEEecchhhccCCCHHHHHHHHHHHHh---c-----CCCCc---
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGD-FEGS--CFLENVREESQRSGGLSCLQQKLLSNLL---K-----HKNVM--- 250 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~--~~~~~~~~~~~~~~~~~~l~~~ll~~~~---~-----~~~~~--- 250 (770)
...|-|++-.|.||||.|..++-+...+ +... -|+.. .... +-....+.+.-.+. . ..+..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg----~~~~-GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~ 79 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKG----AWPN-GERAAFEPHGVEFQVMGTGFTWETQNREADT 79 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecC----Cccc-ChHHHHHhcCcEEEECCCCCeecCCCcHHHH
Confidence 3578888889999999999998875443 3322 13321 1011 22222222100000 0 00000
Q ss_pred ----chHHHHHHHHCCCc-EEEEEeCCCChH-----hHHHHHhcccCCCCCceEEEEcCch
Q 041067 251 ----PFIDLIFRRLSRMK-VLIVFDDVTCLS-----QLQSLIGSLYWLTPVSRIIITTRNK 301 (770)
Q Consensus 251 ----~~~~~l~~~L~~kr-~LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~IivTTR~~ 301 (770)
+..+..++.+...+ =|+|||.+...- ..+++...+....++..||+|-|+.
T Consensus 80 ~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 80 AIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 23344555555545 499999984322 2344555454456777999999986
No 305
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.50 E-value=0.02 Score=57.60 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=27.3
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC
Q 041067 182 SKDVYSLGIWGIGGIGKTTIARAIFDKISGDF 213 (770)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 213 (770)
.....+|+|.|..|.|||||++.+...+....
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 35678999999999999999999998876543
No 306
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.49 E-value=0.0083 Score=52.32 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=22.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhCCC
Q 041067 188 LGIWGIGGIGKTTIARAIFDKISGDF 213 (770)
Q Consensus 188 v~I~G~gGiGKTtLA~~~~~~~~~~f 213 (770)
|-|+|.+|+|||++|+.++..+.+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999998866543
No 307
>PRK08233 hypothetical protein; Provisional
Probab=95.47 E-value=0.012 Score=56.86 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
..+|+|.|.+|+||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998754
No 308
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.46 E-value=0.11 Score=49.96 Aligned_cols=123 Identities=20% Similarity=0.203 Sum_probs=62.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhh--------------ccCCCHHHHHHHHHHHHhcCCC-Cc
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREES--------------QRSGGLSCLQQKLLSNLLKHKN-VM 250 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~--------------~~~~~~~~l~~~ll~~~~~~~~-~~ 250 (770)
.+++|.|..|.|||||++.++..... ..+.+++... ... +.. .+. ...+...+...-. .+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~-~~~~~~~~~~~~i~~~~q~~-~~~--~~tv~~~i~~~LS~G~ 103 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGV-PVSDLEKALSSLISVLNQRP-YLF--DTTLRNNLGRRFSGGE 103 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCE-EHHHHHHHHHhhEEEEccCC-eee--cccHHHhhcccCCHHH
Confidence 37999999999999999999865322 2334444311 000 000 000 0001111100000 01
Q ss_pred chHHHHHHHHCCCcEEEEEeCCCC---hHhHHHHHhcccCCCCCceEEEEcCchhhhhhcCcceEEEe
Q 041067 251 PFIDLIFRRLSRMKVLIVFDDVTC---LSQLQSLIGSLYWLTPVSRIIITTRNKQVLRNWGVRKIYEM 315 (770)
Q Consensus 251 ~~~~~l~~~L~~kr~LlVLDdv~~---~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 315 (770)
...-.+.+.+-.++=++++|+... ....+.+...+.....+..||++|.+.+.... .+.++.+
T Consensus 104 ~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 104 RQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 122234455566778889998743 22233333333222346778899988877653 3555554
No 309
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.41 E-value=0.097 Score=56.40 Aligned_cols=49 Identities=22% Similarity=0.259 Sum_probs=36.2
Q ss_pred HHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 172 EEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 172 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
.++.+.|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455555433334568999999999999999999988766556677775
No 310
>PRK04132 replication factor C small subunit; Provisional
Probab=95.41 E-value=0.77 Score=54.51 Aligned_cols=120 Identities=13% Similarity=0.233 Sum_probs=71.3
Q ss_pred cCCCcHHHHHHHHHHHH-hCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHC-CCcEEEEEe
Q 041067 193 IGGIGKTTIARAIFDKI-SGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLS-RMKVLIVFD 270 (770)
Q Consensus 193 ~gGiGKTtLA~~~~~~~-~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~-~kr~LlVLD 270 (770)
+.++||||+|.++++++ .+.++....--|.++ .. ++..+.+ +......... +. .+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd---~r-gid~IR~-iIk~~a~~~~-----------~~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASD---ER-GINVIRE-KVKEFARTKP-----------IGGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCC---cc-cHHHHHH-HHHHHHhcCC-----------cCCCCCEEEEEE
Confidence 77899999999999986 333333333222222 11 3443332 2222211000 11 245799999
Q ss_pred CCCChH--hHHHHHhcccCCCCCceEEEEcCchh-hhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 271 DVTCLS--QLQSLIGSLYWLTPVSRIIITTRNKQ-VLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 271 dv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+++... ..+.++..+......+++|.+|.+.. +... ......+.+.+++.++-.+.+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHH
Confidence 998754 57777777766566777776665543 3322 2335789999999988876664
No 311
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.41 E-value=0.11 Score=50.04 Aligned_cols=116 Identities=17% Similarity=0.233 Sum_probs=60.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHH------HHHHHHh-----cCCC-Cc---
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQ------KLLSNLL-----KHKN-VM--- 250 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~------~ll~~~~-----~~~~-~~--- 250 (770)
.+++|.|..|.|||||++.++.... ...+.+++... ... .. ....... +++..+. .... ..
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~-~~~-~~-~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGK-DLA-SL-SPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCE-ECC-cC-CHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 4799999999999999999986543 34555555421 111 00 1111111 1222211 1111 11
Q ss_pred -chHHHHHHHHCCCcEEEEEeCCCC---hHhHHHHHhcccCC-CC-CceEEEEcCchhhhh
Q 041067 251 -PFIDLIFRRLSRMKVLIVFDDVTC---LSQLQSLIGSLYWL-TP-VSRIIITTRNKQVLR 305 (770)
Q Consensus 251 -~~~~~l~~~L~~kr~LlVLDdv~~---~~~~~~l~~~~~~~-~~-gs~IivTTR~~~v~~ 305 (770)
...-.+-+.+-..+-++++|+... ....+.+...+... .. |..||++|.+.+...
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 222334555667788999998642 22333333333221 22 667888888876653
No 312
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.38 E-value=0.14 Score=48.95 Aligned_cols=122 Identities=19% Similarity=0.279 Sum_probs=62.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHH--------------HHHHHHhcCCCCcc
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQ--------------KLLSNLLKHKNVMP 251 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~--------------~ll~~~~~~~~~~~ 251 (770)
.+++|.|..|.|||||.+.++.-.. ...+.+++... .... . ......+ .+...+.. ..+.
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~-~~~~-~-~~~~~~~~i~~~~~~~~~~~~t~~e~lLS--~G~~ 102 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGV-DLRD-L-DLESLRKNIAYVPQDPFLFSGTIRENILS--GGQR 102 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCE-Ehhh-c-CHHHHHhhEEEEcCCchhccchHHHHhhC--HHHH
Confidence 3799999999999999999987543 23444554321 1100 0 0000000 00000000 0001
Q ss_pred hHHHHHHHHCCCcEEEEEeCCCC---hHhHHHHHhcccCCCCCceEEEEcCchhhhhhcCcceEEEe
Q 041067 252 FIDLIFRRLSRMKVLIVFDDVTC---LSQLQSLIGSLYWLTPVSRIIITTRNKQVLRNWGVRKIYEM 315 (770)
Q Consensus 252 ~~~~l~~~L~~kr~LlVLDdv~~---~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 315 (770)
..-.+-+.+-.++-+++||+-.. ....+.+...+.....+..||++|.+.+.... .+.++.+
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 12234455566778999998643 22233333333222235678888988877654 4555554
No 313
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.37 E-value=0.078 Score=50.81 Aligned_cols=105 Identities=18% Similarity=0.163 Sum_probs=55.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEec--chhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCC
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENV--REESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRM 263 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~k 263 (770)
.+++|.|..|.|||||++.+..-.. ...+.+++... .-..+.. .+ ...+...-.+.+.+..+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~q~~-~L--------------SgGq~qrv~laral~~~ 89 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGITPVYKPQYI-DL--------------SGGELQRVAIAAALLRN 89 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEEEEEEcccC-CC--------------CHHHHHHHHHHHHHhcC
Confidence 3799999999999999999886432 23344444311 0001111 00 00011222344555667
Q ss_pred cEEEEEeCCCC---hHhHHHHHhcccCC-CC-CceEEEEcCchhhhhh
Q 041067 264 KVLIVFDDVTC---LSQLQSLIGSLYWL-TP-VSRIIITTRNKQVLRN 306 (770)
Q Consensus 264 r~LlVLDdv~~---~~~~~~l~~~~~~~-~~-gs~IivTTR~~~v~~~ 306 (770)
+-++++|.-.. ....+.+...+... .. +..||++|.+.+....
T Consensus 90 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 90 ATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 78899998632 22222222222111 12 3567888887766543
No 314
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.37 E-value=0.05 Score=57.37 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=25.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
...+++++|++|+||||++..++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999999887654
No 315
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.23 Score=48.68 Aligned_cols=143 Identities=17% Similarity=0.326 Sum_probs=84.3
Q ss_pred Ccc-cchHHHHHHHHhhcCCC-----------CCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCC
Q 041067 163 KLV-GVESKVEEIESILGVES-----------KDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSG 230 (770)
Q Consensus 163 ~~v-Gr~~~~~~l~~~L~~~~-----------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 230 (770)
.+| |.|..+++|.+.+..+- ..+.-|.++|++|.|||-||++++++- .+.|+. ++..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~fir-vsgs----- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR-VSGS----- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEE-echH-----
Confidence 344 46778888887765322 235678899999999999999999752 333333 3221
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHH----CCCcEEEEEeCCCChH----------------hHHHHHhcccCCC-
Q 041067 231 GLSCLQQKLLSNLLKHKNVMPFIDLIFRRL----SRMKVLIVFDDVTCLS----------------QLQSLIGSLYWLT- 289 (770)
Q Consensus 231 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L----~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~- 289 (770)
.+.++.+. ++..++++.+ .+.+..|..|.+++.. ..-+++..+..|.
T Consensus 216 ---elvqk~ig---------egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 216 ---ELVQKYIG---------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred ---HHHHHHhh---------hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 22222211 1122333322 3567888889886532 1234444554443
Q ss_pred -CCceEEEEcCchhhhhh-----cCcceEEEeCccChHHHHHHHH
Q 041067 290 -PVSRIIITTRNKQVLRN-----WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 290 -~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
..-+||..|..-+++.. -..+..++.++-+++...+.+.
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilk 328 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILK 328 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHH
Confidence 45688877765555432 2345677888877777777765
No 316
>PRK06217 hypothetical protein; Validated
Probab=95.37 E-value=0.077 Score=51.33 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
.|.|.|.+|.||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999875
No 317
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.36 E-value=0.11 Score=51.26 Aligned_cols=59 Identities=14% Similarity=0.238 Sum_probs=35.7
Q ss_pred HHHHHCCCcEEEEEeCCCC---hHhHH-HHHhcccCCCC--CceEEEEcCchhhhhhcCcceEEEeC
Q 041067 256 IFRRLSRMKVLIVFDDVTC---LSQLQ-SLIGSLYWLTP--VSRIIITTRNKQVLRNWGVRKIYEMK 316 (770)
Q Consensus 256 l~~~L~~kr~LlVLDdv~~---~~~~~-~l~~~~~~~~~--gs~IivTTR~~~v~~~~~~~~~~~l~ 316 (770)
+.+.+...+-++++|+... ....+ .+...+..... |..||++|.+.+.... .+.++.++
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l~ 196 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRVE 196 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEEe
Confidence 4456667888999998743 22233 34443332222 5678889988877643 45666554
No 318
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.36 E-value=0.044 Score=58.27 Aligned_cols=47 Identities=21% Similarity=0.169 Sum_probs=37.6
Q ss_pred CCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHH
Q 041067 162 NKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
+.++|....+.++.+.+..-...-.-|.|+|-.|+||+++|+.++..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 45899999999888877543333446899999999999999999854
No 319
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.34 E-value=0.038 Score=52.35 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=59.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCC-CcchHHHHHHHHCCCc
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKN-VMPFIDLIFRRLSRMK 264 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-~~~~~~~l~~~L~~kr 264 (770)
.+++|.|..|.|||||.+.++.... ...+.+++... .... . ......+.-.. ...+-. .+...-.+-+.+-..+
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~-~~~~-~-~~~~~~~~~i~-~~~qLS~G~~qrl~laral~~~p 101 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGK-EVSF-A-SPRDARRAGIA-MVYQLSVGERQMVEIARALARNA 101 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCE-ECCc-C-CHHHHHhcCeE-EEEecCHHHHHHHHHHHHHhcCC
Confidence 3799999999999999999986532 34455665421 1110 0 11110000000 000000 0122223445556677
Q ss_pred EEEEEeCCCC---hHhHHHHHhcccCC-CCCceEEEEcCchhhhh
Q 041067 265 VLIVFDDVTC---LSQLQSLIGSLYWL-TPVSRIIITTRNKQVLR 305 (770)
Q Consensus 265 ~LlVLDdv~~---~~~~~~l~~~~~~~-~~gs~IivTTR~~~v~~ 305 (770)
-++++|+... ....+.+...+... ..|..||++|.+.+.+.
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 8888998643 22233333333222 34667888888876543
No 320
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.30 E-value=0.18 Score=54.54 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=23.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
..++|.++|..|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999998754
No 321
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.30 E-value=0.2 Score=56.99 Aligned_cols=51 Identities=22% Similarity=0.393 Sum_probs=41.5
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
....++|....+.++.+.+..-...-..|.|+|..|+|||++|+.+++.-.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 346799999999998888765444455789999999999999999998643
No 322
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.29 E-value=0.073 Score=54.50 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=38.5
Q ss_pred HHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEec
Q 041067 174 IESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENV 222 (770)
Q Consensus 174 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~ 222 (770)
+..+|..+-..-+++=|+|+.|.||||+|.+++-.....-..++|++..
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE 97 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTE 97 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCC
Confidence 3344443445578999999999999999999998877777789999843
No 323
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.28 E-value=0.049 Score=59.63 Aligned_cols=86 Identities=17% Similarity=0.250 Sum_probs=51.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcC--------CCCc-------
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKH--------KNVM------- 250 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~--------~~~~------- 250 (770)
..++|.|.+|+|||||+..+......+.+.++-+.-+.+-.. .+..+.+++...-.-+ .+..
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~r---Ev~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTR---EGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcH---HHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 368999999999999999998876544333333333433322 4455555554321100 0111
Q ss_pred -chHHHHHHHH---CCCcEEEEEeCCCC
Q 041067 251 -PFIDLIFRRL---SRMKVLIVFDDVTC 274 (770)
Q Consensus 251 -~~~~~l~~~L---~~kr~LlVLDdv~~ 274 (770)
...-.+-+++ +++++|+++||+-.
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 1122355555 67999999999854
No 324
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.27 E-value=0.066 Score=54.92 Aligned_cols=117 Identities=18% Similarity=0.142 Sum_probs=66.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHH--HHHH--hcCCCCc---chHHH
Q 041067 183 KDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKL--LSNL--LKHKNVM---PFIDL 255 (770)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l--l~~~--~~~~~~~---~~~~~ 255 (770)
.+...++|+|..|.|||||.+.++..+... ...+++. -....... ....+...+ +.+. ....+.. .....
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~-g~~v~~~d-~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~ 185 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLR-GKKVGIVD-ERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEG 185 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEEC-CEEeecch-hHHHHHHHhcccccccccccccccccchHHHH
Confidence 345789999999999999999999876543 3333432 11111000 111222111 0000 0000000 11222
Q ss_pred HHHHHC-CCcEEEEEeCCCChHhHHHHHhcccCCCCCceEEEEcCchhhhh
Q 041067 256 IFRRLS-RMKVLIVFDDVTCLSQLQSLIGSLYWLTPVSRIIITTRNKQVLR 305 (770)
Q Consensus 256 l~~~L~-~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~ 305 (770)
+...+. ..+=++++|.+...+.+..+.... ..|..||+||.+.++..
T Consensus 186 ~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHHH
Confidence 333333 578899999998888777777665 35778999999876643
No 325
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=0.0012 Score=65.24 Aligned_cols=98 Identities=24% Similarity=0.275 Sum_probs=61.8
Q ss_pred ccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc-cCccEEeccCcCccccCc--ccccCCCCCEEe
Q 041067 605 LNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS-GNISWLFLRETAIEELPS--SIERLHRLGYLD 681 (770)
Q Consensus 605 L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~ 681 (770)
|.+.+.|++.||. +..+.- +.+|+.|+.|.||-|. ++.+..... ++|++|+|..|.|..+.+ -+.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~-L~DIsi-c~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISI-CEKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCC-ccHHHH-HHhcccceeEEeeccc-cccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3444556666665 333322 2356667777776655 333333222 677778888787776543 367889999999
Q ss_pred ccCCCCCCCCCc-----ccCCCCCCcEEE
Q 041067 682 LLDCKRLKSLPR-----SLWMLKSLGVLN 705 (770)
Q Consensus 682 L~~~~~~~~lp~-----~l~~l~~L~~L~ 705 (770)
|..|+-.+.-+. .+.-|++|++|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 998876665543 356688888886
No 326
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.26 E-value=0.019 Score=56.86 Aligned_cols=27 Identities=41% Similarity=0.649 Sum_probs=24.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
...+|+|+|.+|+||||||+.++..+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457899999999999999999998754
No 327
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.24 E-value=0.063 Score=63.49 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=38.0
Q ss_pred CCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 162 NKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
..++|....+.++.+.+..-...-..|.|+|..|+|||++|+.+++.-
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 369999999988876665323333468999999999999999998864
No 328
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.18 Score=49.75 Aligned_cols=119 Identities=21% Similarity=0.399 Sum_probs=69.2
Q ss_pred CCcccchHHHHHHHHhhcC-----------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCC
Q 041067 162 NKLVGVESKVEEIESILGV-----------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSG 230 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 230 (770)
.++=|-.++++++.+.... +-+-+.-|.++|++|.|||-+|++++|+- ..||+..+..
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfirvigs------ 245 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVIGS------ 245 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEeehhH------
Confidence 3466777888888775532 11335668899999999999999999974 3466652211
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHH---HHCCCc-EEEEEeCCCCh--------------Hh--HHHHHhcccCCCC
Q 041067 231 GLSCLQQKLLSNLLKHKNVMPFIDLIFR---RLSRMK-VLIVFDDVTCL--------------SQ--LQSLIGSLYWLTP 290 (770)
Q Consensus 231 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~---~L~~kr-~LlVLDdv~~~--------------~~--~~~l~~~~~~~~~ 290 (770)
+ +.++. .+ ++..++++ .-+.|+ ++|.+|.++.. -| .-++...+..|.+
T Consensus 246 --e-lvqky----vg-----egarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdp 313 (435)
T KOG0729|consen 246 --E-LVQKY----VG-----EGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDP 313 (435)
T ss_pred --H-HHHHH----hh-----hhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCC
Confidence 1 11211 11 22333333 334544 88888987431 11 3345555665665
Q ss_pred C--ceEEEEcCchhh
Q 041067 291 V--SRIIITTRNKQV 303 (770)
Q Consensus 291 g--s~IivTTR~~~v 303 (770)
. -+|+..|..++.
T Consensus 314 rgnikvlmatnrpdt 328 (435)
T KOG0729|consen 314 RGNIKVLMATNRPDT 328 (435)
T ss_pred CCCeEEEeecCCCCC
Confidence 4 467776655443
No 329
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.21 E-value=0.025 Score=55.81 Aligned_cols=82 Identities=18% Similarity=0.258 Sum_probs=47.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcC--------CCCc--------
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKH--------KNVM-------- 250 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~--------~~~~-------- 250 (770)
.++|.|.+|+|||+|+..+.+.... +..+++. +.+... .+..+.+++...-..+ .+..
T Consensus 17 r~~I~g~~g~GKt~Ll~~i~~~~~~--d~~V~~~-iGer~~---Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 17 RIGIFGGAGVGKTVLLQEIANNQDA--DVVVYAL-IGERGR---EVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCTT--TEEEEEE-ESECHH---HHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred EEEEEcCcccccchhhHHHHhcccc--cceeeee-ccccch---hHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 6899999999999999999988743 2335554 222211 4455555553321000 1111
Q ss_pred chHHHHHHHH--CCCcEEEEEeCCCC
Q 041067 251 PFIDLIFRRL--SRMKVLIVFDDVTC 274 (770)
Q Consensus 251 ~~~~~l~~~L--~~kr~LlVLDdv~~ 274 (770)
...-.+-+++ +++.+|+++||+..
T Consensus 91 ~~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 91 YTALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred ccchhhhHHHhhcCCceeehhhhhHH
Confidence 1111223333 68999999999843
No 330
>PRK09354 recA recombinase A; Provisional
Probab=95.20 E-value=0.038 Score=58.41 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=37.0
Q ss_pred HHHHhhc-CCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 173 EIESILG-VESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 173 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
.|..+|. .+=..-+++-|+|.+|+||||||.+++......-..++|++
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 4555564 33345678999999999999999999887666667788886
No 331
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.5 Score=53.07 Aligned_cols=156 Identities=17% Similarity=0.315 Sum_probs=84.6
Q ss_pred CCcccchHHHHHHHHhhcC-----------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCC
Q 041067 162 NKLVGVESKVEEIESILGV-----------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSG 230 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 230 (770)
+++=|.++...+|...... +-...+-|-.+|++|.|||++|+++++.-.-.|=.+ .
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv------k------- 500 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV------K------- 500 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec------c-------
Confidence 3455688877778765532 223467799999999999999999999865544321 0
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH-------------hHHHHHhcccCCCCCceEEE-
Q 041067 231 GLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS-------------QLQSLIGSLYWLTPVSRIII- 296 (770)
Q Consensus 231 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~~~gs~Iiv- 296 (770)
+ . ++++...++ .+....+...+.-+-.+.+|.||.++... .+..++...........|+|
T Consensus 501 g-p----EL~sk~vGe-SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~Vi 574 (693)
T KOG0730|consen 501 G-P----ELFSKYVGE-SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVI 574 (693)
T ss_pred C-H----HHHHHhcCc-hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEE
Confidence 0 0 111111110 00011111122223356888899875432 24455555554455545555
Q ss_pred --EcCchhhhhh-c---CcceEEEeCccChHHHHHHHHHhccCCCch
Q 041067 297 --TTRNKQVLRN-W---GVRKIYEMKALEYHHAIELFIMKYAQGVPL 337 (770)
Q Consensus 297 --TTR~~~v~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~glPL 337 (770)
|-|...+-.. + ..+..+.++.-+.+...++|. .+....|+
T Consensus 575 AATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk-~~~kkmp~ 620 (693)
T KOG0730|consen 575 AATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILK-QCAKKMPF 620 (693)
T ss_pred eccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHH-HHHhcCCC
Confidence 4444433222 2 245677777666666677774 33334443
No 332
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.19 E-value=0.12 Score=49.40 Aligned_cols=122 Identities=21% Similarity=0.207 Sum_probs=61.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHH--------------HHHHhcCCCCcc
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKL--------------LSNLLKHKNVMP 251 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l--------------l~~~~~~~~~~~ 251 (770)
.+++|+|..|.|||||.+.++.... ...+.+++... .... . ......+.+ ...+. ...+.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~~-~-~~~~~~~~i~~~~q~~~~~~~tv~~~lL--S~G~~ 102 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGA-DISQ-W-DPNELGDHVGYLPQDDELFSGSIAENIL--SGGQR 102 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCE-Eccc-C-CHHHHHhheEEECCCCccccCcHHHHCc--CHHHH
Confidence 3799999999999999999986533 23344444311 1100 0 111111110 00000 00011
Q ss_pred hHHHHHHHHCCCcEEEEEeCCCC---hHhHHHHHhcccC-CCCCceEEEEcCchhhhhhcCcceEEEe
Q 041067 252 FIDLIFRRLSRMKVLIVFDDVTC---LSQLQSLIGSLYW-LTPVSRIIITTRNKQVLRNWGVRKIYEM 315 (770)
Q Consensus 252 ~~~~l~~~L~~kr~LlVLDdv~~---~~~~~~l~~~~~~-~~~gs~IivTTR~~~v~~~~~~~~~~~l 315 (770)
..-.+-+.+-.++=+++||+... ....+.+...+.. ...|..||++|.+.+... . .++++.+
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 22234445556677889998643 2222222222221 123667888888887664 2 4555554
No 333
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.19 E-value=0.069 Score=53.43 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.5
Q ss_pred EEEEecCCCcHHHHHHHHHHHH
Q 041067 188 LGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 188 v~I~G~gGiGKTtLA~~~~~~~ 209 (770)
|.|.|++|+||||+|+.++.++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998875
No 334
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.18 E-value=0.1 Score=55.93 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=28.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCC--CceEEEE
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDF--EGSCFLE 220 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~ 220 (770)
-.+++++|+.|+||||++.++..+....+ ..+.++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 56899999999999999999998865443 3445554
No 335
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.17 E-value=0.14 Score=61.80 Aligned_cols=134 Identities=19% Similarity=0.178 Sum_probs=71.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCC----CCceEEEE--ecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGD----FEGSCFLE--NVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRR 259 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~~~~~~~--~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~ 259 (770)
.-+.|+|-+|.||||+...++-..... =+..+|+. ............ .+..-+...+..............+.
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~-~~~~~l~~~~~~~~~~~~~~~~~~e~ 301 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQL-SLIDYLAEELFSQGIAKQLIEAHQEL 301 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhc-cHHHHHHHHHhccCCcchhhHHHHHH
Confidence 368999999999999999998653222 22333332 111111111011 23333333333222222333334678
Q ss_pred HCCCcEEEEEeCCCChHh------HHHHHhcccCCCCCceEEEEcCchhhhhhcCcceEEEeCccChH
Q 041067 260 LSRMKVLIVFDDVTCLSQ------LQSLIGSLYWLTPVSRIIITTRNKQVLRNWGVRKIYEMKALEYH 321 (770)
Q Consensus 260 L~~kr~LlVLDdv~~~~~------~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l~~L~~~ 321 (770)
++..++++.+|.++.... ...+-...++ -+.+.+|+|+|....-.....-..+++..+.++
T Consensus 302 l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~-~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~ 368 (824)
T COG5635 302 LKTGKLLLLLDGLDELEPKNQRALIREINKFLQE-YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDL 368 (824)
T ss_pred HhccchhhHhhccchhhhhhHHHHHHHHHHHhhh-ccCCeEEEEeccchhhhhhhhhhhccchhhhHH
Confidence 899999999999877542 2221111222 358899999987644333222233444444433
No 336
>PRK13947 shikimate kinase; Provisional
Probab=95.15 E-value=0.015 Score=55.48 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
.|.|+|++|+||||+|+.+++++.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999998643
No 337
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.14 E-value=0.052 Score=60.17 Aligned_cols=88 Identities=20% Similarity=0.166 Sum_probs=51.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhC-CCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCc---------chHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISG-DFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVM---------PFIDL 255 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~---------~~~~~ 255 (770)
...+|+|.+|+|||||++.+++.+.. +-++.+++.-+.+-.. .+..+.+.+-.++.....+. ...-.
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpe---EVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPE---EVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchh---hHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999998754 4455555554444322 33333333211111111111 12223
Q ss_pred HHHHH--CCCcEEEEEeCCCChH
Q 041067 256 IFRRL--SRMKVLIVFDDVTCLS 276 (770)
Q Consensus 256 l~~~L--~~kr~LlVLDdv~~~~ 276 (770)
+-+++ .++.+||++|++....
T Consensus 494 ~Ae~fre~G~dVlillDSlTR~A 516 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSITRLG 516 (672)
T ss_pred HHHHHHHcCCCEEEEEeCchHHH
Confidence 34444 5799999999985543
No 338
>PRK06547 hypothetical protein; Provisional
Probab=95.13 E-value=0.02 Score=54.59 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=24.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 183 KDVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
....+|+|.|.+|.||||+|+.+....
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999999873
No 339
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.10 E-value=0.03 Score=50.51 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=27.8
Q ss_pred HHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 170 KVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 170 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
+..++-+.|...-..-.+|.+.|.-|.||||+++.++..+
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3344444443221223489999999999999999999874
No 340
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.09 E-value=0.023 Score=58.90 Aligned_cols=129 Identities=18% Similarity=0.177 Sum_probs=71.5
Q ss_pred CCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHH
Q 041067 162 NKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLS 241 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 241 (770)
+.+.-.....+++.++|...-...+.|.|.|..|.||||+++.+...+...-...+-+.+..+........ .
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~--------~ 175 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQ--------I 175 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSE--------E
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccce--------E
Confidence 34444444445566666433234578999999999999999999987665523333344222221110000 0
Q ss_pred HHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChHhHHHHHhcccCCCCCceE-EEEcCchh
Q 041067 242 NLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLSQLQSLIGSLYWLTPVSRI-IITTRNKQ 302 (770)
Q Consensus 242 ~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~I-ivTTR~~~ 302 (770)
.+..........+.++..|+..+=.+|++.+.+.+.+..+. .. ..|..+ +-|....+
T Consensus 176 ~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~-a~---~tGh~~~~tT~Ha~s 233 (270)
T PF00437_consen 176 QIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQ-AA---NTGHLGSLTTLHANS 233 (270)
T ss_dssp EEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHH-HH---HTT-EEEEEEEE-SS
T ss_pred EEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHH-hh---ccCCceeeeeeecCC
Confidence 00000123356677888888888889999999988877733 32 456666 55554443
No 341
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.09 E-value=0.025 Score=54.47 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=23.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
+|+|.|.+|.||||||+.+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999887543
No 342
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.08 E-value=0.018 Score=55.09 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
...|.|+|++|+||||+|+.++.+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999999986
No 343
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.06 E-value=0.019 Score=55.78 Aligned_cols=26 Identities=31% Similarity=0.258 Sum_probs=23.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
++.+|+|.|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999764
No 344
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.06 E-value=0.74 Score=51.04 Aligned_cols=72 Identities=19% Similarity=0.236 Sum_probs=42.7
Q ss_pred cccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHh-CCCCceEEEEecchhhccCCCHHHHHHHHHHH
Q 041067 164 LVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKIS-GDFEGSCFLENVREESQRSGGLSCLQQKLLSN 242 (770)
Q Consensus 164 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 242 (770)
..|...-...|.+++. +-..-.++.|.|.+|+|||++|..++..+. .+-..++|++- + - ....+...++..
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSl--E----m-~~~~l~~Rl~~~ 245 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSL--E----M-SAEQLGERLLAS 245 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC--C----C-CHHHHHHHHHHH
Confidence 3444444445555543 222334788999999999999999997754 33334556541 1 1 344555555554
Q ss_pred H
Q 041067 243 L 243 (770)
Q Consensus 243 ~ 243 (770)
.
T Consensus 246 ~ 246 (421)
T TIGR03600 246 K 246 (421)
T ss_pred H
Confidence 3
No 345
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.05 E-value=0.067 Score=51.20 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
++.+.|++|+||||+++.++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 68899999999999999999887655
No 346
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.04 E-value=0.065 Score=58.91 Aligned_cols=85 Identities=24% Similarity=0.208 Sum_probs=51.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhC-CCCceEEEEecchhhccCCCHHHHHHHHHHHHhcC--------CCCc------
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISG-DFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKH--------KNVM------ 250 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~--------~~~~------ 250 (770)
..++|.|.+|+|||||+..+.+.... +-+.++|+. +.+-.. .+..+.+.+...-..+ .+..
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~l-iGER~r---Ev~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAG-VGERSR---EGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEc-CCcchH---HHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 36899999999999999999987653 345555543 433322 4454555544321100 0111
Q ss_pred --chHHHHHHHH---CCCcEEEEEeCCCC
Q 041067 251 --PFIDLIFRRL---SRMKVLIVFDDVTC 274 (770)
Q Consensus 251 --~~~~~l~~~L---~~kr~LlVLDdv~~ 274 (770)
...-.+-+++ +++++|+++||+-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 1223345555 37899999999944
No 347
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.01 E-value=0.13 Score=57.00 Aligned_cols=47 Identities=19% Similarity=0.216 Sum_probs=31.5
Q ss_pred cchHHHHHHHHhhcCCC----CCeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 166 GVESKVEEIESILGVES----KDVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 166 Gr~~~~~~l~~~L~~~~----~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
++...++.|.+.+.... ..-.+|+|+|.+|+||||++..++..+..+
T Consensus 327 ~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 327 GRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred HHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 34444444555442211 235789999999999999999998875443
No 348
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.99 E-value=0.03 Score=53.37 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=31.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh-CCCCceEEEEecchhh
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKIS-GDFEGSCFLENVREES 226 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~ 226 (770)
..++.+.|+.|+|||.+|+.+++.+. +.....+-+. ..+.+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d-~s~~~ 44 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRID-MSEYS 44 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEE-GGGHC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHh-hhccc
Confidence 35788999999999999999999887 5555555554 44443
No 349
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.99 E-value=0.075 Score=56.39 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=33.7
Q ss_pred HHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC------CceEEEE
Q 041067 173 EIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDF------EGSCFLE 220 (770)
Q Consensus 173 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~ 220 (770)
.+..+|..+-..-.++-|+|.+|+|||++|.+++....... ..++|++
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 34445543334567899999999999999999987643221 3678887
No 350
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.97 E-value=0.053 Score=53.79 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
.+++.|+|..|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 478999999999999999998843
No 351
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.95 E-value=0.041 Score=50.46 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=27.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh-CCCCceEEEE
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKIS-GDFEGSCFLE 220 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~ 220 (770)
++|.|+|..|+|||||++.+.+.+. ..+...++.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 4799999999999999999999976 4555555554
No 352
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.95 E-value=0.077 Score=57.94 Aligned_cols=87 Identities=17% Similarity=0.255 Sum_probs=51.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcC--------CCCc-------
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKH--------KNVM------- 250 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~--------~~~~------- 250 (770)
..++|.|.+|+|||||+..+......+...++.+..+.+-.. .+..+.+++...-..+ .+..
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~r---Ev~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTR---EGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCch---HHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 368999999999999999999876544343333333444322 4455555553321100 1111
Q ss_pred -chHHHHHHHH---CCCcEEEEEeCCCCh
Q 041067 251 -PFIDLIFRRL---SRMKVLIVFDDVTCL 275 (770)
Q Consensus 251 -~~~~~l~~~L---~~kr~LlVLDdv~~~ 275 (770)
...-.+-+++ +++++|+++||+-..
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 1223345555 468999999999543
No 353
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.94 E-value=0.03 Score=60.11 Aligned_cols=50 Identities=20% Similarity=0.293 Sum_probs=36.7
Q ss_pred CCcccchHHHHHHHHhhcCC------------CCCeEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 162 NKLVGVESKVEEIESILGVE------------SKDVYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
.+++|.++.++.+.-.+... ....+.|.++|++|+||||+|+.++.....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35778887777775544321 112467899999999999999999998654
No 354
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.12 Score=56.16 Aligned_cols=112 Identities=21% Similarity=0.238 Sum_probs=64.4
Q ss_pred CCcccchHHHH---HHHHhhcCCC-------CCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCC
Q 041067 162 NKLVGVESKVE---EIESILGVES-------KDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGG 231 (770)
Q Consensus 162 ~~~vGr~~~~~---~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 231 (770)
++.-|.|+..+ +|.+.|..+. .=++-|.++|++|.|||-||++++-... .-+|....++....+.+
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~----VPFF~~sGSEFdEm~VG 379 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG----VPFFYASGSEFDEMFVG 379 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC----CCeEeccccchhhhhhc
Confidence 35667776554 5555664322 1266799999999999999999986532 22333322222111100
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHH----CCCcEEEEEeCCCChH-------------hHHHHHhcccCCCCCceE
Q 041067 232 LSCLQQKLLSNLLKHKNVMPFIDLIFRRL----SRMKVLIVFDDVTCLS-------------QLQSLIGSLYWLTPVSRI 294 (770)
Q Consensus 232 ~~~l~~~ll~~~~~~~~~~~~~~~l~~~L----~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~~~gs~I 294 (770)
.+..+++... ..-++.|.+|.++... .+.+++.....|.+..-|
T Consensus 380 -------------------vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGi 440 (752)
T KOG0734|consen 380 -------------------VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGI 440 (752)
T ss_pred -------------------ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCce
Confidence 1223333322 3467999999886432 256677777777665545
Q ss_pred EE
Q 041067 295 II 296 (770)
Q Consensus 295 iv 296 (770)
||
T Consensus 441 Iv 442 (752)
T KOG0734|consen 441 IV 442 (752)
T ss_pred EE
Confidence 54
No 355
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.93 E-value=0.071 Score=53.23 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=30.6
Q ss_pred HHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 171 VEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 171 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
..++.+.+.....+..+|||.|.||+||+||.-++...+...
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 344444444444567899999999999999999999887654
No 356
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.91 E-value=0.14 Score=49.92 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
.+++|+|..|.|||||++.++..
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999853
No 357
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.90 E-value=0.068 Score=57.29 Aligned_cols=102 Identities=19% Similarity=0.311 Sum_probs=57.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCC
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRM 263 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~k 263 (770)
.++=+-|||..|.|||.|.-.+|+.+...-..++.+.. -+..+.+.+ .......+.+..+.+.+.++
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~---------Fm~~vh~~l----~~~~~~~~~l~~va~~l~~~ 127 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHE---------FMLDVHSRL----HQLRGQDDPLPQVADELAKE 127 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccccH---------HHHHHHHHH----HHHhCCCccHHHHHHHHHhc
Confidence 46678999999999999999999975332111111110 122222222 22112234455666777777
Q ss_pred cEEEEEeCC--CChHh---HHHHHhcccCCCCCceEEEEcCch
Q 041067 264 KVLIVFDDV--TCLSQ---LQSLIGSLYWLTPVSRIIITTRNK 301 (770)
Q Consensus 264 r~LlVLDdv--~~~~~---~~~l~~~~~~~~~gs~IivTTR~~ 301 (770)
..||.||.+ .|..+ +..++..+ +..|. |+|+|-|.
T Consensus 128 ~~lLcfDEF~V~DiaDAmil~rLf~~l--~~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 128 SRLLCFDEFQVTDIADAMILKRLFEAL--FKRGV-VLVATSNR 167 (362)
T ss_pred CCEEEEeeeeccchhHHHHHHHHHHHH--HHCCC-EEEecCCC
Confidence 789999975 33332 44454444 23454 55555554
No 358
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.89 E-value=0.058 Score=50.34 Aligned_cols=86 Identities=23% Similarity=0.275 Sum_probs=44.5
Q ss_pred EEecCCCcHHHHHHHHHHHHhCCCCceEEEEe---cchhhccCCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHCCC-
Q 041067 190 IWGIGGIGKTTIARAIFDKISGDFEGSCFLEN---VREESQRSGGLSCLQQKLLSNLLKHKN--VMPFIDLIFRRLSRM- 263 (770)
Q Consensus 190 I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~---~~~~~~~~~~~~~l~~~ll~~~~~~~~--~~~~~~~l~~~L~~k- 263 (770)
|.|++|+||||+|+.++.++. | ..++. +++..... . .+...+-..+..... ..-..+.+++.+...
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~---~~is~~~llr~~~~~~-s--~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~ 72 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--L---VHISVGDLLREEIKSD-S--ELGKQIQEYLDNGELVPDELVIELLKERLEQPP 72 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--S---EEEEHHHHHHHHHHTT-S--HHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGG
T ss_pred CcCCCCCChHHHHHHHHHhcC--c---ceechHHHHHHHHhhh-h--HHHHHHHHHHHhhccchHHHHHHHHHHHHhhhc
Confidence 689999999999999999752 2 33331 11111111 1 111222222222211 113445566666432
Q ss_pred -cEEEEEeCCC-ChHhHHHHHh
Q 041067 264 -KVLIVFDDVT-CLSQLQSLIG 283 (770)
Q Consensus 264 -r~LlVLDdv~-~~~~~~~l~~ 283 (770)
.--+|||+.- +.+|.+.+..
T Consensus 73 ~~~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 73 CNRGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp TTTEEEEESB-SSHHHHHHHHH
T ss_pred ccceeeeeeccccHHHHHHHHH
Confidence 4567899984 4455555544
No 359
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.89 E-value=0.046 Score=58.62 Aligned_cols=97 Identities=14% Similarity=0.097 Sum_probs=56.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCC---ceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHC
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFE---GSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLS 261 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~ 261 (770)
-..|.|+|..|.||||+++.+.+.+....+ .++.+.+..+.. .. ..... .....+.............++..|+
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~-~~-~~~~~-~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFV-YD-EIETI-SASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEe-cc-ccccc-cceeeeeeccccccCHHHHHHHHhc
Confidence 368999999999999999999988755433 223333222211 00 11000 0000010001111245667788888
Q ss_pred CCcEEEEEeCCCChHhHHHHHhc
Q 041067 262 RMKVLIVFDDVTCLSQLQSLIGS 284 (770)
Q Consensus 262 ~kr~LlVLDdv~~~~~~~~l~~~ 284 (770)
..+-.+++..+.+.+..+..+..
T Consensus 211 ~~Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 211 RKPHAILVGEARDAETISAALEA 233 (358)
T ss_pred cCCCEEeeeeeCCHHHHHHHHHH
Confidence 88999999999998877655444
No 360
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.89 E-value=0.29 Score=50.61 Aligned_cols=36 Identities=17% Similarity=-0.021 Sum_probs=28.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCC-CCceEEEE
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGD-FEGSCFLE 220 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 220 (770)
-.++.|.|.+|+||||+|.+++.....+ -..++|++
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 3478899999999999999998876444 45666765
No 361
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.81 E-value=0.04 Score=52.88 Aligned_cols=27 Identities=41% Similarity=0.550 Sum_probs=23.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
..+|+|.|++|+||||+|+.++.....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 358999999999999999999998754
No 362
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.81 E-value=0.066 Score=54.72 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=32.5
Q ss_pred HHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHh--C----CCCceEEEE
Q 041067 173 EIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKIS--G----DFEGSCFLE 220 (770)
Q Consensus 173 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~--~----~f~~~~~~~ 220 (770)
.|.++|..+-..-.++-|+|.+|+|||+||..++-.+. . .=..++|++
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid 79 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID 79 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe
Confidence 45556643323345899999999999999999886532 1 123467776
No 363
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.79 E-value=0.21 Score=47.88 Aligned_cols=115 Identities=17% Similarity=0.111 Sum_probs=62.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHH----------hcCCCC-c--
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNL----------LKHKNV-M-- 250 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~----------~~~~~~-~-- 250 (770)
....|-|+|-.|-||||.|..++-+...+=-.+.++- .-.-.... +-....+.+- .+ ....+. .
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQ-FlKg~~~~-GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQ-FIKGAWST-GERNLLEFGG-GVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEE-EecCCCcc-CHHHHHhcCC-CcEEEECCCCCcccCCCcHHHH
Confidence 3468999999999999999999887544322222221 11111011 2222222210 00 000000 0
Q ss_pred ----chHHHHHHHHCCCc-EEEEEeCCCChH-----hHHHHHhcccCCCCCceEEEEcCch
Q 041067 251 ----PFIDLIFRRLSRMK-VLIVFDDVTCLS-----QLQSLIGSLYWLTPVSRIIITTRNK 301 (770)
Q Consensus 251 ----~~~~~l~~~L~~kr-~LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~IivTTR~~ 301 (770)
...+..++.+...+ =|+|||.+-..- +.+++...+..-.++..||+|=|+.
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 23344555555444 599999984432 3455555555456778999999986
No 364
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.78 E-value=0.41 Score=48.48 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
+..|+|+||+||||||..++-.+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999987753
No 365
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.78 E-value=0.043 Score=53.87 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=29.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 183 KDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
....+|+|+|++|.||||+|+.+...+...-...+++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 34669999999999999999999998654433345553
No 366
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.75 E-value=0.021 Score=55.11 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
+|+|.|.+|.||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 367
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.75 E-value=0.12 Score=56.54 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=33.0
Q ss_pred hHHHHHHHHhhc-----CCCCCeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 168 ESKVEEIESILG-----VESKDVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 168 ~~~~~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
.+.++++..||. .+.-..++.-|.|++|+||||-++.++...
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 345667777776 344457799999999999999999998764
No 368
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.73 E-value=0.11 Score=55.19 Aligned_cols=46 Identities=22% Similarity=0.145 Sum_probs=34.6
Q ss_pred cccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 164 LVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 164 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
++|....+.++.+.+..-...-.-|.|+|-.|+||+++|+.+++.-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4677777777776665333334458999999999999999998753
No 369
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.73 E-value=0.027 Score=54.09 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
++|.+.|++|+||||+|+++.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4799999999999999999988753
No 370
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.73 E-value=0.093 Score=55.18 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=33.2
Q ss_pred HHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHh------CCCCceEEEE
Q 041067 173 EIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKIS------GDFEGSCFLE 220 (770)
Q Consensus 173 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~------~~f~~~~~~~ 220 (770)
.|..+|..+=..-+++-|+|.+|+||||||..++-... ..=..++|++
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 45555654434567899999999999999998874321 1224678887
No 371
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.28 Score=57.78 Aligned_cols=102 Identities=20% Similarity=0.273 Sum_probs=68.7
Q ss_pred CCcccchHHHHHHHHhhcCC---CC---CeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHH
Q 041067 162 NKLVGVESKVEEIESILGVE---SK---DVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCL 235 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~---~~---~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 235 (770)
..++|-++.+..|.+.+... .. ........|+.|+|||-||++++.-+.+..+.-+-++ +...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-----------mse~ 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-----------MSEF 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-----------hhhh
Confidence 35788888888887777531 11 3456788999999999999999998876666555543 2222
Q ss_pred HHHHHHHHhcCCCCc---chHHHHHHHHCCCcE-EEEEeCCCChH
Q 041067 236 QQKLLSNLLKHKNVM---PFIDLIFRRLSRMKV-LIVFDDVTCLS 276 (770)
Q Consensus 236 ~~~ll~~~~~~~~~~---~~~~~l~~~L~~kr~-LlVLDdv~~~~ 276 (770)
.+ .+.+.+..+.. +....+.+.++.++| +|.||||+..+
T Consensus 631 ~e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 631 QE--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred hh--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 22 33443333222 555678888888885 66689998654
No 372
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.71 E-value=0.08 Score=59.69 Aligned_cols=75 Identities=23% Similarity=0.299 Sum_probs=44.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHC-
Q 041067 183 KDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLS- 261 (770)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~- 261 (770)
..-++.-++|++|+||||||.-++++.. |. +--.| .++.. ....+...+...+... ..+.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG--Ys--VvEIN---ASDeR-t~~~v~~kI~~avq~~-----------s~l~a 384 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG--YS--VVEIN---ASDER-TAPMVKEKIENAVQNH-----------SVLDA 384 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC--ce--EEEec---ccccc-cHHHHHHHHHHHHhhc-----------ccccc
Confidence 3467899999999999999999998632 11 11111 22222 3334444444333221 1232
Q ss_pred -CCcEEEEEeCCCChH
Q 041067 262 -RMKVLIVFDDVTCLS 276 (770)
Q Consensus 262 -~kr~LlVLDdv~~~~ 276 (770)
+++..+|+|.++-..
T Consensus 385 dsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAP 400 (877)
T ss_pred CCCcceEEEecccCCc
Confidence 577889999997643
No 373
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.71 E-value=0.19 Score=54.60 Aligned_cols=21 Identities=48% Similarity=0.771 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFD 207 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~ 207 (770)
.++|+|++|.|||||||.+.-
T Consensus 364 ~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 364 ALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred eEEEECCCCccHHHHHHHHHc
Confidence 699999999999999999864
No 374
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.70 E-value=0.27 Score=46.58 Aligned_cols=56 Identities=7% Similarity=-0.010 Sum_probs=38.5
Q ss_pred HHHHHHHHCCCcEEEEEeC----CCChHhHHHHHhcccCCCCCceEEEEcCchhhhhhcC
Q 041067 253 IDLIFRRLSRMKVLIVFDD----VTCLSQLQSLIGSLYWLTPVSRIIITTRNKQVLRNWG 308 (770)
Q Consensus 253 ~~~l~~~L~~kr~LlVLDd----v~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~ 308 (770)
.-.|.+.+-+++-+++-|. ++..-.|+-+.-.-.-+..|..|++.|.+.++...+.
T Consensus 145 RvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 145 RVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 4456677778899999994 5555555543322222457999999999999887754
No 375
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=1.5 Score=46.07 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=24.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 183 KDVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
.+..||-++|.-|.||||....+++.++.+
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkk 128 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKK 128 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhc
Confidence 457899999999999999888777665443
No 376
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.043 Score=53.61 Aligned_cols=52 Identities=21% Similarity=0.400 Sum_probs=39.9
Q ss_pred CCcccchHHHHHHHHhhcCC-----------CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC
Q 041067 162 NKLVGVESKVEEIESILGVE-----------SKDVYSLGIWGIGGIGKTTIARAIFDKISGDF 213 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 213 (770)
.++=|.|-..+++.+..... -+-++-|.++|++|.|||.||++++++-...|
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 35668888888887766422 23467789999999999999999999765443
No 377
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.68 E-value=0.18 Score=48.27 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=61.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhc--------------cC--CCHHHHHHHHHHHHhcCCCC
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQ--------------RS--GGLSCLQQKLLSNLLKHKNV 249 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~--------------~~--~~~~~l~~~ll~~~~~~~~~ 249 (770)
.+++|+|..|.|||||++.++.... ...+.+++... .... .. ..-..+.+.+. + ...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--L---S~G 99 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGK-DIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK--L---SGG 99 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCE-EcccchHhhhccEEEEecCCccccCCcHHHHhh--c---CHH
Confidence 4799999999999999999986432 23344444211 0000 00 00001111110 0 000
Q ss_pred cchHHHHHHHHCCCcEEEEEeCCCC---hHhHHHHHhcccCC-CCCceEEEEcCchhhhhhcCcceEEEe
Q 041067 250 MPFIDLIFRRLSRMKVLIVFDDVTC---LSQLQSLIGSLYWL-TPVSRIIITTRNKQVLRNWGVRKIYEM 315 (770)
Q Consensus 250 ~~~~~~l~~~L~~kr~LlVLDdv~~---~~~~~~l~~~~~~~-~~gs~IivTTR~~~v~~~~~~~~~~~l 315 (770)
+...-.+.+.+..++=++++|+... ....+.+...+... ..|..||++|.+.+.+.... +.++.+
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~-d~i~~l 168 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLC-DRVAIL 168 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhC-CEEEEE
Confidence 1122245556667888999998743 22222222222211 23677999998887655322 344443
No 378
>PRK13949 shikimate kinase; Provisional
Probab=94.65 E-value=0.025 Score=53.83 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.|.|+|++|.||||+|+.++....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 379
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.63 E-value=0.027 Score=54.13 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=23.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
..+|+|-||=|+||||||+.++++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 45899999999999999999999865
No 380
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.62 E-value=0.043 Score=58.98 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=37.9
Q ss_pred CCcccchHHHHHHHHhhcC---------CC---CCeEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 162 NKLVGVESKVEEIESILGV---------ES---KDVYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~---------~~---~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
..++|.++.++.+..++.. +. .....|.++|++|+||||+|+.+...+..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~ 76 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3588888888888766632 00 11467899999999999999999988644
No 381
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.61 E-value=0.099 Score=49.12 Aligned_cols=124 Identities=18% Similarity=0.186 Sum_probs=63.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcE
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKV 265 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~ 265 (770)
.+++|+|..|.|||||++.++..+. .....+++... .... . ........+. -+..-...+...-.+...+...+-
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~-~~~~-~-~~~~~~~~i~-~~~qlS~G~~~r~~l~~~l~~~~~ 100 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGK-DIAK-L-PLEELRRRIG-YVPQLSGGQRQRVALARALLLNPD 100 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCE-Eccc-C-CHHHHHhceE-EEeeCCHHHHHHHHHHHHHhcCCC
Confidence 4899999999999999999987543 34555665421 1110 0 0111111000 000000011222234455556678
Q ss_pred EEEEeCCCC---hHhHHHHHhcccCC-CCCceEEEEcCchhhhhhcCcceEEEe
Q 041067 266 LIVFDDVTC---LSQLQSLIGSLYWL-TPVSRIIITTRNKQVLRNWGVRKIYEM 315 (770)
Q Consensus 266 LlVLDdv~~---~~~~~~l~~~~~~~-~~gs~IivTTR~~~v~~~~~~~~~~~l 315 (770)
++++|+... ......+...+... ..+..++++|.+.+..... .+.++.+
T Consensus 101 i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 101 LLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 899998743 22233333322211 2256788888888776553 2344444
No 382
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.61 E-value=0.041 Score=53.42 Aligned_cols=92 Identities=23% Similarity=0.208 Sum_probs=52.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHH--hcCCCCcchHHHHHHHHCCC
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNL--LKHKNVMPFIDLIFRRLSRM 263 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~--~~~~~~~~~~~~l~~~L~~k 263 (770)
..++|+|..|.||||+++.+...+... ...+.+.+..+......... ++..+- ..........+.++..++..
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~lR~~ 100 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHPNWV----RLVTRPGNVEGSGEVTMADLLRSALRMR 100 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCCCEE----EEEEecCCCCCCCccCHHHHHHHHhccC
Confidence 479999999999999999998776533 23333332222111000000 000000 00011124556677777777
Q ss_pred cEEEEEeCCCChHhHHHHH
Q 041067 264 KVLIVFDDVTCLSQLQSLI 282 (770)
Q Consensus 264 r~LlVLDdv~~~~~~~~l~ 282 (770)
+=.++++.+.+.+.++.+.
T Consensus 101 pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 101 PDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred CCEEEEEccCcHHHHHHHH
Confidence 8889999999987765443
No 383
>PRK05439 pantothenate kinase; Provisional
Probab=94.59 E-value=0.05 Score=56.74 Aligned_cols=30 Identities=33% Similarity=0.421 Sum_probs=25.7
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 182 SKDVYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
.....+|||.|.+|+||||+|+.+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999999887653
No 384
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.16 Score=51.50 Aligned_cols=29 Identities=34% Similarity=0.508 Sum_probs=25.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCC
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDF 213 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 213 (770)
+..++|||.+|.|||-+|+.|+....-.|
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 56799999999999999999998865443
No 385
>PRK14528 adenylate kinase; Provisional
Probab=94.58 E-value=0.17 Score=49.01 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
+.|.|.|++|+||||+|+.+....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998765
No 386
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.56 E-value=0.56 Score=59.21 Aligned_cols=97 Identities=16% Similarity=0.168 Sum_probs=52.3
Q ss_pred CCCcEEEEEeCCCChH-------hHHHHHhcccCC-----CCCceEEEEcCchhhhhh-----cCcceEEEeCccChHHH
Q 041067 261 SRMKVLIVFDDVTCLS-------QLQSLIGSLYWL-----TPVSRIIITTRNKQVLRN-----WGVRKIYEMKALEYHHA 323 (770)
Q Consensus 261 ~~kr~LlVLDdv~~~~-------~~~~l~~~~~~~-----~~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea 323 (770)
+..++.|.+|+++... .+..++..+... ..|--||-+|-.+++... ..-+..+.+..++..+.
T Consensus 1730 k~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R 1809 (2281)
T CHL00206 1730 AMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQ 1809 (2281)
T ss_pred HCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhH
Confidence 3568999999997643 144555444322 123334445554444321 13357788887777665
Q ss_pred HHHHH-HhccCCCchh-----HHHHhhHhcCCCHHHHHHH
Q 041067 324 IELFI-MKYAQGVPLA-----LKVLGCFLYEREKEVWESA 357 (770)
Q Consensus 324 ~~Lf~-~~~~~glPLa-----l~~~g~~L~~~~~~~w~~~ 357 (770)
.+.|. ..+..|.+++ +..+|..-.+-+..+-..+
T Consensus 1810 ~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanL 1849 (2281)
T CHL00206 1810 RKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVAL 1849 (2281)
T ss_pred HHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHH
Confidence 55543 3455566554 4455554444444444333
No 387
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.51 E-value=0.024 Score=55.67 Aligned_cols=23 Identities=43% Similarity=0.696 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
+|+|.|.+|+||||+|+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 388
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.50 E-value=0.028 Score=52.06 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
+|.|.|.+|+||||+|+.+..+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999875
No 389
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.47 E-value=0.17 Score=49.33 Aligned_cols=25 Identities=32% Similarity=0.268 Sum_probs=22.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
++.|+|.+|+||||++..+...+..
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 7889999999999999999987643
No 390
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.47 E-value=0.026 Score=56.27 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=22.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
+|||.|..|.||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998875
No 391
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.47 E-value=0.23 Score=48.61 Aligned_cols=23 Identities=30% Similarity=0.196 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
++++|.|..|.|||||.+.+.-.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 68999999999999999999854
No 392
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.45 E-value=0.24 Score=55.07 Aligned_cols=49 Identities=20% Similarity=0.233 Sum_probs=36.0
Q ss_pred HHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 172 EEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 172 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
.++.+.|..+=..-.++.|.|.+|+|||||+.+++.....+-..++|++
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455566433334568999999999999999999988764445667776
No 393
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.44 E-value=0.048 Score=54.09 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=27.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCCCCc
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGDFEG 215 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 215 (770)
....|.++||+|.||||+.+.++.++...+..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 46678889999999999999999987766554
No 394
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.44 E-value=0.031 Score=52.20 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.5
Q ss_pred EEEEecCCCcHHHHHHHHHHHH
Q 041067 188 LGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 188 v~I~G~gGiGKTtLA~~~~~~~ 209 (770)
|.|+|++|.||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999875
No 395
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.42 E-value=0.26 Score=47.66 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=23.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
..+|.|.|.+|.||||+|+.+.....
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998764
No 396
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.051 Score=62.86 Aligned_cols=151 Identities=15% Similarity=0.184 Sum_probs=86.9
Q ss_pred CCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhC-CCC-----ceEEEEecchhhccCCCHHH
Q 041067 161 KNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISG-DFE-----GSCFLENVREESQRSGGLSC 234 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~-----~~~~~~~~~~~~~~~~~~~~ 234 (770)
-+.++|||+++.++.+.|.....+- -.++|-+|||||++|.-++.++.. .-+ ..++-- ++..
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNN--PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL----------D~g~ 236 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNN--PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL----------DLGS 236 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCC--CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe----------cHHH
Confidence 4569999999999999997543332 246899999999999999998643 221 122221 2221
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHC-CCcEEEEEeCCCCh-----------HhHHHHHhcccCCCCCceEEEEcCchh
Q 041067 235 LQQKLLSNLLKHKNVMPFIDLIFRRLS-RMKVLIVFDDVTCL-----------SQLQSLIGSLYWLTPVSRIIITTRNKQ 302 (770)
Q Consensus 235 l~~~ll~~~~~~~~~~~~~~~l~~~L~-~kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gs~IivTTR~~~ 302 (770)
++. ...-..+-++..+.+.+.++ ..++.+.+|.+... +.-..+.|.+.. |.--.|=.||=++.
T Consensus 237 LvA----GakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT~~EY 311 (786)
T COG0542 237 LVA----GAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATTLDEY 311 (786)
T ss_pred Hhc----cccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEeccHHHH
Confidence 111 00000011133333333333 45899999987432 223334444422 22223556776552
Q ss_pred h---hhh---cCcceEEEeCccChHHHHHHHH
Q 041067 303 V---LRN---WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 303 v---~~~---~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
- -+. -...+.+.+..-+.+++...+.
T Consensus 312 Rk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILr 343 (786)
T COG0542 312 RKYIEKDAALERRFQKVLVDEPSVEDTIAILR 343 (786)
T ss_pred HHHhhhchHHHhcCceeeCCCCCHHHHHHHHH
Confidence 1 111 1234688999999999999997
No 397
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.39 E-value=0.18 Score=50.14 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
.|.|.|++|+||||+|+.++.+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998764
No 398
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.39 E-value=0.029 Score=52.11 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=18.7
Q ss_pred EEEEEecCCCcHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIF 206 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~ 206 (770)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 399
>PRK13948 shikimate kinase; Provisional
Probab=94.37 E-value=0.031 Score=53.79 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
..+.|.++||.|+||||+++.+..+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999998863
No 400
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.37 E-value=0.089 Score=53.02 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFD 207 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~ 207 (770)
.+++|.|+.|+|||||.+.++.
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999976
No 401
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.37 E-value=0.027 Score=51.57 Aligned_cols=25 Identities=20% Similarity=0.553 Sum_probs=21.7
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 188 LGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 188 v~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
|+|+|+.|+|||||++.+.......
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 7899999999999999999865443
No 402
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.34 E-value=0.18 Score=51.36 Aligned_cols=87 Identities=13% Similarity=0.111 Sum_probs=51.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh----CCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcC--------CCCc---
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKIS----GDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKH--------KNVM--- 250 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~----~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~--------~~~~--- 250 (770)
..++|.|-.|+|||+|+..+.++.. .+-+.++|+. +.+-.. .+..+.+++...-.-+ .++.
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~-IGeR~r---ev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~ 145 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA-MGITME---DARFFKDDFEETGALERVVLFLNLANDPTIE 145 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE-eccccH---HHHHHHHHhhhcCCcceEEEEEecCCCCHHH
Confidence 3589999999999999999887643 2235556654 444322 4455555544321000 0111
Q ss_pred -----chHHHHHHHHC---CCcEEEEEeCCCChH
Q 041067 251 -----PFIDLIFRRLS---RMKVLIVFDDVTCLS 276 (770)
Q Consensus 251 -----~~~~~l~~~L~---~kr~LlVLDdv~~~~ 276 (770)
...-.+-++++ ++++|+++||+-...
T Consensus 146 r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A 179 (276)
T cd01135 146 RIITPRMALTTAEYLAYEKGKHVLVILTDMTNYA 179 (276)
T ss_pred HHHHHHHHHHHHHHHHhccCCeEEEEEcChhHHH
Confidence 11223455553 688999999986543
No 403
>PRK13946 shikimate kinase; Provisional
Probab=94.34 E-value=0.032 Score=54.02 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
.+.|.+.|++|+||||+|+.+++++
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3469999999999999999999986
No 404
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.32 E-value=0.035 Score=53.49 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=22.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.+++|.|+.|+||||+|+.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999988754
No 405
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.32 E-value=0.47 Score=45.03 Aligned_cols=76 Identities=8% Similarity=0.026 Sum_probs=43.2
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCC-Cc--chHHHHHHHHCC--
Q 041067 188 LGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKN-VM--PFIDLIFRRLSR-- 262 (770)
Q Consensus 188 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-~~--~~~~~l~~~L~~-- 262 (770)
+.|.|.+|.|||++|.++... .....+|+... ... +. .+++.+......... .. +....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~----~~~-d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATA----EAF-DD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELD 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEcc----CcC-CH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC
Confidence 678999999999999999865 33466676522 112 22 244444332222221 11 444455555532
Q ss_pred CcEEEEEeCC
Q 041067 263 MKVLIVFDDV 272 (770)
Q Consensus 263 kr~LlVLDdv 272 (770)
+.-.+++|.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 2337889976
No 406
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.32 E-value=0.03 Score=52.17 Aligned_cols=22 Identities=27% Similarity=0.653 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3688999999999999999886
No 407
>PTZ00494 tuzin-like protein; Provisional
Probab=94.31 E-value=9.5 Score=41.40 Aligned_cols=205 Identities=12% Similarity=0.041 Sum_probs=111.9
Q ss_pred HHHHHHHHHHhhcc-------------ccccccccch--hhHHHHhHhhhhhcccccc----ccCCCCCCCcccchHHHH
Q 041067 112 LRSWRKALKEAASL-------------SGFLSLNIRH--ESEFINEVGNDILKRLDEV----FRPRDNKNKLVGVESKVE 172 (770)
Q Consensus 112 v~~w~~al~~~a~~-------------~g~~~~~~~~--e~~~i~~i~~~i~~~~~~~----~~~~~~~~~~vGr~~~~~ 172 (770)
-+.||.++.+-+.+ -||..++++. .+-.++-.++...+..++. ...+.....+|.|+.+-.
T Consensus 302 ERd~RY~l~KYsG~vSa~~a~Lgv~svFgwN~knYr~qQRs~Ql~~Av~TLsk~~~~~~~~~~~a~a~~~~~V~R~~eE~ 381 (664)
T PTZ00494 302 DTNFRYALAKYKGTMSCIAGVLVVAYVFTANLRAYRRQQRGHQLRTAIETLSKAARPRKEEGMLAAAAEAFEVRREDEEA 381 (664)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccchhhHHH
Confidence 45788888774442 2343332221 2223334444444443321 123446778999999999
Q ss_pred HHHHhhcCCC-CCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCc-
Q 041067 173 EIESILGVES-KDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVM- 250 (770)
Q Consensus 173 ~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~- 250 (770)
.+.+.|...+ ..++++.+.|.-|.||++|.+....+- --..+||+ ++...+ .+.++ ...+....-+.
T Consensus 382 ~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE---~~paV~VD-VRg~ED---tLrsV----VKALgV~nve~C 450 (664)
T PTZ00494 382 LVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE---GVALVHVD-VGGTED---TLRSV----VRALGVSNVEVC 450 (664)
T ss_pred HHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc---CCCeEEEE-ecCCcc---hHHHH----HHHhCCCChhhh
Confidence 9988887543 468999999999999999999877642 23456665 433321 34433 33443221111
Q ss_pred -chHHHHHH-------HHCCCcEEEEEe--CCCChHh-HHHHHhcccCCCCCceEEEEcCchhhhhh---cCcceEEEeC
Q 041067 251 -PFIDLIFR-------RLSRMKVLIVFD--DVTCLSQ-LQSLIGSLYWLTPVSRIIITTRNKQVLRN---WGVRKIYEMK 316 (770)
Q Consensus 251 -~~~~~l~~-------~L~~kr~LlVLD--dv~~~~~-~~~l~~~~~~~~~gs~IivTTR~~~v~~~---~~~~~~~~l~ 316 (770)
+.++.+.+ ...++.-+||+- +=.+... ..+. ..+...-.-|+|++----+.+-.. ...-..|-++
T Consensus 451 GDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT~~n~~LPRLDFy~VP 529 (664)
T PTZ00494 451 GDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALTPLNVSSRRLDFYCIP 529 (664)
T ss_pred ccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhchhhccCccceeEecC
Confidence 33333332 234555566653 2222221 1111 112222345677764433322111 2234689999
Q ss_pred ccChHHHHHHHH
Q 041067 317 ALEYHHAIELFI 328 (770)
Q Consensus 317 ~L~~~ea~~Lf~ 328 (770)
.++.++|.++-.
T Consensus 530 nFSr~QAf~Ytq 541 (664)
T PTZ00494 530 PFSRRQAFAYAE 541 (664)
T ss_pred CcCHHHHHHHHh
Confidence 999999988875
No 408
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.30 E-value=0.047 Score=51.83 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=20.7
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhC
Q 041067 188 LGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 188 v~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
|.|.|.+|+|||||++.+.+.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999998753
No 409
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=0.27 Score=52.10 Aligned_cols=94 Identities=22% Similarity=0.286 Sum_probs=56.9
Q ss_pred HHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCc
Q 041067 171 VEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVM 250 (770)
Q Consensus 171 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~ 250 (770)
+.++.+.|..+--.-.+|.|-|-+|||||||.-+++.++..+- .+.||+- +. ...++.-. ...+.-..+..
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG--EE-----S~~QiklR-A~RL~~~~~~l 149 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG--EE-----SLQQIKLR-ADRLGLPTNNL 149 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC--Cc-----CHHHHHHH-HHHhCCCccce
Confidence 3456666643322345899999999999999999999988776 7888862 11 12211110 11222111211
Q ss_pred -----chHHHHHHHHC-CCcEEEEEeCCC
Q 041067 251 -----PFIDLIFRRLS-RMKVLIVFDDVT 273 (770)
Q Consensus 251 -----~~~~~l~~~L~-~kr~LlVLDdv~ 273 (770)
...+.|.+.+. .++-++|+|-+.
T Consensus 150 ~l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 150 YLLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred EEehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 34555666664 466899999874
No 410
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.27 E-value=0.05 Score=51.56 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=25.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
...+++|+|..|+|||||++.+...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4679999999999999999999988765
No 411
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.25 E-value=0.037 Score=50.68 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=21.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
+|.|-|.+|.||||+|+.++++..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999999754
No 412
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.24 E-value=0.04 Score=52.33 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=32.6
Q ss_pred cccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHH
Q 041067 164 LVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 164 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
+||.+..+.++.+.+..-......|.|+|-.|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888887776532222345779999999999999999984
No 413
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.23 E-value=0.096 Score=53.10 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=35.5
Q ss_pred HHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEE
Q 041067 172 EEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFL 219 (770)
Q Consensus 172 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 219 (770)
.++...+.....+..+|||.|.||+||+||.-++-.++..+=..+.-+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVl 85 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVL 85 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEE
Confidence 345555555566788999999999999999999998876554434443
No 414
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.22 E-value=0.091 Score=52.71 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=35.0
Q ss_pred HHHHHHHCCCcEEEEEeCC----C--ChHhHHHHHhcccCCCCCceEEEEcCchhhhhh
Q 041067 254 DLIFRRLSRMKVLIVFDDV----T--CLSQLQSLIGSLYWLTPVSRIIITTRNKQVLRN 306 (770)
Q Consensus 254 ~~l~~~L~~kr~LlVLDdv----~--~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~ 306 (770)
-.+.+.|..++=|++||.- | ....+-.++..+.. .|..|+++|.|-+....
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCcHHhHh
Confidence 3456678889999999953 2 23345556655543 38899999999866544
No 415
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.22 E-value=0.1 Score=54.16 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=27.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCC-C-CceEEEE
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGD-F-EGSCFLE 220 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-~~~~~~~ 220 (770)
..++++++|.+|+||||++..++.....+ - ..+.++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 35699999999999999999999876543 1 2344444
No 416
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.16 E-value=0.082 Score=57.44 Aligned_cols=84 Identities=14% Similarity=0.211 Sum_probs=47.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcC--------CCCc-------
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKH--------KNVM------- 250 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~--------~~~~------- 250 (770)
..++|.|..|+|||||++.++.... .+..++. .+.+-.. .+..+.+.++..-.-+ .+..
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~~--~dv~Vi~-lIGER~r---Ev~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGTT--ADVIVVG-LVGERGR---EVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCCC--CCEEEEE-EEcCChH---HHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 4699999999999999999886432 2445553 2333321 3444444433221000 0111
Q ss_pred -chHHHHHHHH--CCCcEEEEEeCCCCh
Q 041067 251 -PFIDLIFRRL--SRMKVLIVFDDVTCL 275 (770)
Q Consensus 251 -~~~~~l~~~L--~~kr~LlVLDdv~~~ 275 (770)
...-.+-+++ +++++|+++||+-..
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 1122344555 589999999999543
No 417
>PRK15453 phosphoribulokinase; Provisional
Probab=94.16 E-value=0.071 Score=54.27 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=24.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 183 KDVYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
....+|+|.|.+|.||||+|+.+.+.+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34679999999999999999999976643
No 418
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.15 E-value=0.02 Score=33.85 Aligned_cols=19 Identities=37% Similarity=0.499 Sum_probs=10.1
Q ss_pred CcEEEccCCCCcccchhhh
Q 041067 725 PIILNLAKTNIERIPKSIS 743 (770)
Q Consensus 725 L~~L~L~~~~l~~lp~~l~ 743 (770)
|+.|+|++|+++.+|.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555555443
No 419
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.14 E-value=0.14 Score=52.12 Aligned_cols=85 Identities=16% Similarity=0.112 Sum_probs=47.6
Q ss_pred EEEEEEecCCCcHHHHH-HHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhc--------CCCCc------
Q 041067 186 YSLGIWGIGGIGKTTIA-RAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLK--------HKNVM------ 250 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~--------~~~~~------ 250 (770)
..++|.|..|+|||+|| ..+.+.. +-+..+.+..+.+... .+..+.+.+...-.. ..+..
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~V~~~iGer~~---ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK--GKKVYCIYVAIGQKAS---TVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc--CCCeEEEEEecccchH---HHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 35899999999999996 5555542 3455544443444322 445555555432110 01111
Q ss_pred --chHHHHHHHH--CCCcEEEEEeCCCCh
Q 041067 251 --PFIDLIFRRL--SRMKVLIVFDDVTCL 275 (770)
Q Consensus 251 --~~~~~l~~~L--~~kr~LlVLDdv~~~ 275 (770)
...-.+-+++ +++.+|+++||+...
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 1122333443 478999999999654
No 420
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.66 Score=49.94 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
-|--.++|++|.|||++..++++.+
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc
Confidence 4557889999999999999999864
No 421
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.12 E-value=0.045 Score=53.39 Aligned_cols=25 Identities=36% Similarity=0.297 Sum_probs=22.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
..+|.|.|++|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999874
No 422
>PRK14529 adenylate kinase; Provisional
Probab=94.09 E-value=0.3 Score=48.52 Aligned_cols=91 Identities=20% Similarity=0.146 Sum_probs=47.2
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhCC-CCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCC-cE
Q 041067 188 LGIWGIGGIGKTTIARAIFDKISGD-FEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRM-KV 265 (770)
Q Consensus 188 v~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~k-r~ 265 (770)
|.|.|++|+||||+|+.++..+.-. ....-.+ ++.......+....++++.. ..-.++......+.+++.+. .-
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdll---r~~i~~~t~lg~~i~~~i~~-G~lvpdei~~~lv~~~l~~~~~~ 78 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIF---REHIGGGTELGKKAKEYIDR-GDLVPDDITIPMILETLKQDGKN 78 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhh---hhhccCCChHHHHHHHHHhc-cCcchHHHHHHHHHHHHhccCCC
Confidence 7889999999999999999876422 2211111 11111110222222222211 11111224456667777432 45
Q ss_pred EEEEeCC-CChHhHHHHH
Q 041067 266 LIVFDDV-TCLSQLQSLI 282 (770)
Q Consensus 266 LlVLDdv-~~~~~~~~l~ 282 (770)
-+|||.. .+.+|.+.+.
T Consensus 79 g~iLDGfPRt~~Qa~~l~ 96 (223)
T PRK14529 79 GWLLDGFPRNKVQAEKLW 96 (223)
T ss_pred cEEEeCCCCCHHHHHHHH
Confidence 6999998 3445554443
No 423
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.08 E-value=0.087 Score=55.59 Aligned_cols=112 Identities=21% Similarity=0.089 Sum_probs=61.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCc
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMK 264 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr 264 (770)
-..+.|.|..|.||||+++.+...+.... ..+.+.+..+..........+. ..............+.+...|+..+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~Lr~~p 219 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVHLF---YSKGGQGLAKVTPKDLLQSCLRMRP 219 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEEEE---ecCCCCCcCccCHHHHHHHHhcCCC
Confidence 35899999999999999999987654332 3334443333211110000000 0000000112245666777888888
Q ss_pred EEEEEeCCCChHhHHHHHhcccCCCCCceEEEEcCchhh
Q 041067 265 VLIVFDDVTCLSQLQSLIGSLYWLTPVSRIIITTRNKQV 303 (770)
Q Consensus 265 ~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v 303 (770)
=.+|+|.+...+.++. +.....+..| ++.|+...+.
T Consensus 220 d~ii~gE~r~~e~~~~-l~a~~~g~~~--~i~T~Ha~~~ 255 (308)
T TIGR02788 220 DRIILGELRGDEAFDF-IRAVNTGHPG--SITTLHAGSP 255 (308)
T ss_pred CeEEEeccCCHHHHHH-HHHHhcCCCe--EEEEEeCCCH
Confidence 8899999998766654 3333222222 4666665543
No 424
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.07 E-value=0.078 Score=54.41 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=29.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
.-.++.|.|.+|+||||+|.+++.....+=..++|++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4568999999999999999998776544455777776
No 425
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.07 E-value=0.28 Score=51.39 Aligned_cols=88 Identities=22% Similarity=0.254 Sum_probs=54.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCC--CceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCC
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDF--EGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRM 263 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~k 263 (770)
..+.|.|..|.||||+++++.+.+.... ...+-+.+..+......+.. .+..........+.++..|+..
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v--------~~~~~~~~~~~~~~l~~aLR~~ 204 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVV--------QLRTSDDAISMTRLLKATLRLR 204 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEE--------EEEecCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998876532 23334443333211110100 0000111114567778888888
Q ss_pred cEEEEEeCCCChHhHHHH
Q 041067 264 KVLIVFDDVTCLSQLQSL 281 (770)
Q Consensus 264 r~LlVLDdv~~~~~~~~l 281 (770)
+=-||+..+.+.+.++.+
T Consensus 205 pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 205 PDRIIVGEVRGGEALDLL 222 (299)
T ss_pred CCEEEEeccCCHHHHHHH
Confidence 888899999998876643
No 426
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.06 E-value=0.064 Score=55.16 Aligned_cols=36 Identities=28% Similarity=0.322 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 170 KVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 170 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
.++++...+..+ +.|.+.|.+|+|||++|+.++...
T Consensus 10 l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 10 VTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 344455555433 246789999999999999999855
No 427
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.06 E-value=0.32 Score=50.29 Aligned_cols=31 Identities=29% Similarity=0.514 Sum_probs=24.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhCCCCceEEE
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISGDFEGSCFL 219 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 219 (770)
+++|+|..|.|||||.+.++.-.. ..+.+++
T Consensus 32 ~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i 62 (275)
T cd03289 32 RVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQI 62 (275)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcC--CCcEEEE
Confidence 799999999999999999987643 2344444
No 428
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.05 E-value=0.11 Score=56.83 Aligned_cols=86 Identities=16% Similarity=0.202 Sum_probs=51.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh-CCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcC--------CCCc------
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKIS-GDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKH--------KNVM------ 250 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~--------~~~~------ 250 (770)
..++|.|.+|+|||+|+..+..... .+-+.++|.- +.+-.. .+..+.+++...-.-+ .+..
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~-iGeR~r---Ev~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCG-IGERCR---EGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEE-eccCcH---HHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 3589999999999999999987764 3335666653 433322 4445555544321100 1111
Q ss_pred --chHHHHHHHHC---CCcEEEEEeCCCCh
Q 041067 251 --PFIDLIFRRLS---RMKVLIVFDDVTCL 275 (770)
Q Consensus 251 --~~~~~l~~~L~---~kr~LlVLDdv~~~ 275 (770)
...-.+-++++ ++++|+++||+-..
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 12233455553 68999999999543
No 429
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.05 E-value=0.044 Score=51.36 Aligned_cols=27 Identities=33% Similarity=0.530 Sum_probs=23.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhCCC
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISGDF 213 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~~f 213 (770)
.|.++||.|+||||+.+.+++.+.-.|
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 478999999999999999998865443
No 430
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=94.04 E-value=0.4 Score=49.75 Aligned_cols=49 Identities=8% Similarity=0.080 Sum_probs=30.4
Q ss_pred chHHHHHHHHhccceeEeecCCccCchhhHHHHHHHHHhhccCCcEEEeEEEEec
Q 041067 29 ISKSLVNVIEASAISVIVFSEGYASSRSCLDELVKILECKKEYAQIVIPFFYRVD 83 (770)
Q Consensus 29 ~~~~l~~ai~~s~~~ivv~s~~y~~s~~cl~El~~i~~~~~~~~~~v~pvf~~v~ 83 (770)
...++.++++++++.+.|+.-....+..+. ++...+. +..++-|+=++|
T Consensus 11 ~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l~-----~kp~IiVlNK~D 59 (276)
T TIGR03596 11 ARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIRG-----NKPRLIVLNKAD 59 (276)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHHC-----CCCEEEEEEccc
Confidence 346899999999999999986655444442 3333331 233555555554
No 431
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.04 E-value=0.093 Score=54.00 Aligned_cols=40 Identities=20% Similarity=0.086 Sum_probs=35.2
Q ss_pred CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 181 ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 181 ~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
+=..-+++.|+|.+|+|||++|.++......+...++|++
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3345679999999999999999999999888888899987
No 432
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.04 E-value=0.1 Score=46.19 Aligned_cols=46 Identities=26% Similarity=0.397 Sum_probs=33.2
Q ss_pred CcccchHHHHHH----HHhhcC-CCCCeEEEEEEecCCCcHHHHHHHHHHH
Q 041067 163 KLVGVESKVEEI----ESILGV-ESKDVYSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 163 ~~vGr~~~~~~l----~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
.++|-.-..+.+ ...+.. .++++-|++.+|.+|+|||.+|+.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 356655444444 444433 3456889999999999999999999887
No 433
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.02 E-value=0.081 Score=51.68 Aligned_cols=35 Identities=29% Similarity=0.465 Sum_probs=25.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEe
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLEN 221 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 221 (770)
.|+|+|-||+||||+|..+..++..+-...+.+.+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVD 36 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVD 36 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEe
Confidence 58999999999999999977775544333344443
No 434
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.01 E-value=0.17 Score=53.03 Aligned_cols=49 Identities=20% Similarity=0.204 Sum_probs=36.5
Q ss_pred HHHHHhhc-CCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 172 EEIESILG-VESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 172 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
..|...|. .+-..-+++-|+|..|+||||||..+.......-..++|++
T Consensus 39 ~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID 88 (322)
T PF00154_consen 39 PALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID 88 (322)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred cccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec
Confidence 34555554 22233568999999999999999999988766667788887
No 435
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.97 E-value=0.1 Score=53.57 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=29.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEE
Q 041067 183 KDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCF 218 (770)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~ 218 (770)
.+..+|.|.|.+|.|||||+..+.+.+.......+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 458899999999999999999999998776544443
No 436
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.96 E-value=0.043 Score=52.52 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
.|.|.|.+|.||||+|+.+.+++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999983
No 437
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.95 E-value=0.074 Score=58.09 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=35.0
Q ss_pred CcccchHHHHHHHHhhc-------CC-----C--CCeEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 163 KLVGVESKVEEIESILG-------VE-----S--KDVYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 163 ~~vGr~~~~~~l~~~L~-------~~-----~--~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
.++|.+..++.+...+. .. + ..-..|.++|.+|+|||++|+.++.....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV 134 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 47888888887754431 10 0 01356899999999999999999987643
No 438
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.95 E-value=0.25 Score=48.53 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
.+++|+|..|.|||||.+.++..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998864
No 439
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.95 E-value=0.051 Score=52.57 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=30.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
.++|.|+|+.|+|||||++.+.......|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 368999999999999999999999888886555543
No 440
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.94 E-value=0.045 Score=52.33 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
..|.|+|+.|.||||+|+.+....
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 469999999999999999999875
No 441
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.93 E-value=0.08 Score=56.55 Aligned_cols=49 Identities=29% Similarity=0.268 Sum_probs=39.4
Q ss_pred CcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCc
Q 041067 163 KLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEG 215 (770)
Q Consensus 163 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 215 (770)
.++|.++.+..+...+..+. .+-+.|.+|+|||+||+.++..+...|-.
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~----~vll~G~PG~gKT~la~~lA~~l~~~~~~ 73 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG----HVLLEGPPGVGKTLLARALARALGLPFVR 73 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC----CEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence 48898888888777665444 48899999999999999999987754443
No 442
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.90 E-value=0.17 Score=53.80 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=32.8
Q ss_pred HHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHh------CCCCceEEEE
Q 041067 173 EIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKIS------GDFEGSCFLE 220 (770)
Q Consensus 173 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~------~~f~~~~~~~ 220 (770)
.|.++|..+=..-.++-|+|.+|+|||||+..++-... ..-..++|++
T Consensus 114 ~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId 167 (344)
T PLN03187 114 ALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID 167 (344)
T ss_pred hHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE
Confidence 34455543334467888999999999999999874322 1124678887
No 443
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.90 E-value=0.34 Score=47.34 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
.+++|.|..|.|||||.+.++.-.
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998643
No 444
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.89 E-value=0.16 Score=56.46 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=36.6
Q ss_pred HHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 171 VEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 171 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
+.++.+.|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|++
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 34566666444344568999999999999999999887655444567776
No 445
>PRK13975 thymidylate kinase; Provisional
Probab=93.89 E-value=0.052 Score=53.12 Aligned_cols=26 Identities=35% Similarity=0.440 Sum_probs=23.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
..|+|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999998764
No 446
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=0.35 Score=54.87 Aligned_cols=152 Identities=16% Similarity=0.205 Sum_probs=83.8
Q ss_pred CCcccchHHHHHHHHhhcC-----------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCC
Q 041067 162 NKLVGVESKVEEIESILGV-----------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSG 230 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 230 (770)
..+.|.+...+.+.+.+.. +-...+.+-++|++|.|||.||+++++.....|-....-
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~----------- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS----------- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-----------
Confidence 4566667666666555431 123466899999999999999999999654443322110
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH-------------hHHHHHhcccCCCCCce--EE
Q 041067 231 GLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS-------------QLQSLIGSLYWLTPVSR--II 295 (770)
Q Consensus 231 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~~~gs~--Ii 295 (770)
.+..+.+.+. .....+......+..++.|.+|.++... ....++.........+. ||
T Consensus 311 ---~l~sk~vGes-----ek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi 382 (494)
T COG0464 311 ---ELLSKWVGES-----EKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVI 382 (494)
T ss_pred ---HHhccccchH-----HHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEE
Confidence 1111111000 0011222333335678999999985422 23333333332333333 44
Q ss_pred EEcCchhhhhh-----cCcceEEEeCccChHHHHHHHHHhcc
Q 041067 296 ITTRNKQVLRN-----WGVRKIYEMKALEYHHAIELFIMKYA 332 (770)
Q Consensus 296 vTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~ 332 (770)
-+|-..+.... ..-+..+.+..-+.++..+.|.....
T Consensus 383 ~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 383 AATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred ecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 44444433221 13356888999999999999863333
No 447
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.86 E-value=0.2 Score=59.37 Aligned_cols=167 Identities=19% Similarity=0.146 Sum_probs=84.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHH-HhCCCCceEEEEe--------cchhhccCCCHHHHHHHHHHHHhcCCCCcchHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDK-ISGDFEGSCFLEN--------VREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDL 255 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~-~~~~f~~~~~~~~--------~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~ 255 (770)
.++++|.|+.|.||||+.+.+.-. +..+ ..+++.. ..+......+-..+.+. ++.+. .....
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~aq--~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~-LStfS------~~m~~ 392 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALMFQ--SGIPIPANEHSEIPYFEEIFADIGDEQSIEQN-LSTFS------GHMKN 392 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHHHH--hCCCccCCccccccchhheeeecChHhHHhhh-hhHHH------HHHHH
Confidence 468999999999999999999754 1111 1111110 00111111010111111 11110 11222
Q ss_pred HHHHHC--CCcEEEEEeCCCC---hHhHHH----HHhcccCCCCCceEEEEcCchhhhhhcCc-c---------------
Q 041067 256 IFRRLS--RMKVLIVFDDVTC---LSQLQS----LIGSLYWLTPVSRIIITTRNKQVLRNWGV-R--------------- 310 (770)
Q Consensus 256 l~~~L~--~kr~LlVLDdv~~---~~~~~~----l~~~~~~~~~gs~IivTTR~~~v~~~~~~-~--------------- 310 (770)
+...+. ..+-|+++|.... +..-.. ++..+. ..|+.+|+||...++...... .
T Consensus 393 ~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~ 470 (771)
T TIGR01069 393 ISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS 470 (771)
T ss_pred HHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc
Confidence 333333 4789999999854 222222 233332 357899999999876433211 0
Q ss_pred eEEEeCccChHHHHHHHHHhccCCCchhHHHHhhHhcCCCHHHHHHHHHHHHh
Q 041067 311 KIYEMKALEYHHAIELFIMKYAQGVPLALKVLGCFLYEREKEVWESAIDKLQR 363 (770)
Q Consensus 311 ~~~~l~~L~~~ea~~Lf~~~~~~glPLal~~~g~~L~~~~~~~w~~~l~~l~~ 363 (770)
..|.+..=....|..+- +.+.-|+|-.+..-|..+.+....+...+++++..
T Consensus 471 p~Ykl~~G~~g~S~a~~-iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 471 PTYKLLKGIPGESYAFE-IAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred eEEEECCCCCCCcHHHH-HHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 12322221122333333 45556888888887777765555566666666543
No 448
>PRK14530 adenylate kinase; Provisional
Probab=93.85 E-value=0.046 Score=54.43 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
.|.|+|++|+||||+|+.++.+.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 449
>PRK13768 GTPase; Provisional
Probab=93.85 E-value=0.08 Score=54.06 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=25.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEE
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFL 219 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 219 (770)
.++.|.|.||+||||++..+.......-..++.+
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i 36 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIV 36 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEE
Confidence 5789999999999999999988765543333333
No 450
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.79 E-value=0.27 Score=51.17 Aligned_cols=41 Identities=22% Similarity=0.189 Sum_probs=28.7
Q ss_pred cccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHH
Q 041067 164 LVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIF 206 (770)
Q Consensus 164 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~ 206 (770)
+-+|..+..--.++|. ++++..|.+.|.+|.|||-||-+..
T Consensus 226 i~prn~eQ~~ALdlLl--d~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 226 IRPRNAEQRVALDLLL--DDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred cCcccHHHHHHHHHhc--CCCCCeEEeeccCCccHhHHHHHHH
Confidence 3445544444444443 4568899999999999999988765
No 451
>PTZ00035 Rad51 protein; Provisional
Probab=93.78 E-value=0.19 Score=53.49 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=33.7
Q ss_pred HHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhC------CCCceEEEE
Q 041067 172 EEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISG------DFEGSCFLE 220 (770)
Q Consensus 172 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~ 220 (770)
..+.++|..+=..-.++.|+|.+|+|||||+..++-...- .=..++|++
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyId 159 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYID 159 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEE
Confidence 3455566544445678999999999999999988754331 123455776
No 452
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.78 E-value=0.075 Score=54.65 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=29.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
++|+|+|.+|+|||||+..+...++.+. .++.+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5799999999999999999999988876 566665
No 453
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.77 E-value=0.2 Score=49.59 Aligned_cols=22 Identities=41% Similarity=0.466 Sum_probs=19.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHH
Q 041067 188 LGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 188 v~I~G~gGiGKTtLA~~~~~~~ 209 (770)
|.|.|++|+||||+|+.++.+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6889999999999999998764
No 454
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.77 E-value=0.12 Score=54.27 Aligned_cols=67 Identities=25% Similarity=0.176 Sum_probs=44.9
Q ss_pred CCCCCcccchHHHHH---HHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhc
Q 041067 159 DNKNKLVGVESKVEE---IESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQ 227 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 227 (770)
.....+||..+..+. +.+++..+.-.-+.|-+.|++|.|||+||..++..+....+.+... .++.+.
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~is--gSEiyS 90 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSIS--GSEIYS 90 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEE--GGGG-B
T ss_pred eccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcc--cceeee
Confidence 345689998887766 4555554443457899999999999999999999998877765543 445543
No 455
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.77 E-value=0.068 Score=59.78 Aligned_cols=33 Identities=21% Similarity=0.479 Sum_probs=26.8
Q ss_pred hhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 177 ILGVESKDVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 177 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
.+....+.+.+|+|.|..|.||||||+.+...+
T Consensus 57 lL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 57 LLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 333344568899999999999999999998764
No 456
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.76 E-value=0.06 Score=53.43 Aligned_cols=155 Identities=16% Similarity=0.135 Sum_probs=103.5
Q ss_pred CCCccceeEEeccCCCCCcccCcc----CCCCCCCcEEEecCCCCCCccCCc-c--------------c-cCccEEeccC
Q 041067 602 MPRLNKLVLLNLRGSKSLKRLPSR----IFNLEFLTKLNLSGCSKLKRLPEI-S--------------S-GNISWLFLRE 661 (770)
Q Consensus 602 ~~~L~~L~~L~L~~~~~l~~lp~~----i~~l~~L~~L~L~~~~~l~~lp~~-~--------------~-~~L~~L~l~~ 661 (770)
+-++++|+..+|++|-+-...|.. |.+-+.|.+|.+++|. ++.+... + . +.|+......
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 456688999999999877666654 4456789999999986 3333211 1 0 5688888888
Q ss_pred cCccccCcc-----cccCCCCCEEeccCCCCCCC-----CCcccCCCCCCcEEEeecCCCCc----ccCcccCCCCCCcE
Q 041067 662 TAIEELPSS-----IERLHRLGYLDLLDCKRLKS-----LPRSLWMLKSLGVLNLSGCSNLQ----RLPECLAQFSSPII 727 (770)
Q Consensus 662 ~~i~~lp~~-----i~~l~~L~~L~L~~~~~~~~-----lp~~l~~l~~L~~L~l~~~~~~~----~lp~~l~~l~~L~~ 727 (770)
|++...|.. +..-.+|+.+.+..|.+-.. +-..+..+.+|+.|+|..|.... -+...+...+.|+.
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 888765543 22235888888888764221 11234567899999999876542 23334566677899
Q ss_pred EEccCCCCc--ccch---hh--hCCCCCcEEecccCc
Q 041067 728 LNLAKTNIE--RIPK---SI--SQLLMLRYLLLSYSE 757 (770)
Q Consensus 728 L~L~~~~l~--~lp~---~l--~~l~~L~~L~l~~c~ 757 (770)
|.+..|-++ ...+ .+ ...|+|..|...+|.
T Consensus 247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred ccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 999998876 1211 11 345788888888886
No 457
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.75 E-value=0.057 Score=53.30 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=24.3
Q ss_pred CCCCCeEEEEEEecCCCcHHHHHHHHHHH
Q 041067 180 VESKDVYSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 180 ~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
.+....+.|.|+|++|+|||||++.+...
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34456788999999999999999999754
No 458
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.75 E-value=0.19 Score=54.94 Aligned_cols=83 Identities=18% Similarity=0.162 Sum_probs=46.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhc--------CCCCc-------
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLK--------HKNVM------- 250 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~--------~~~~~------- 250 (770)
..++|.|..|+|||||++.+++.... +..++.. +.+-.. .+..+.+..+..-.- ..+..
T Consensus 159 qri~I~G~sG~GKTtLL~~I~~~~~~--d~~v~~~-iGER~r---Ev~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 159 QRMGIFAGSGVGKSVLLSMLARNADA--DVSVIGL-IGERGR---EVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCC--CEEEEEE-EecCcH---HHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 46899999999999999998876533 3444432 332211 333333333222100 01111
Q ss_pred -chHHHHHHHH--CCCcEEEEEeCCCC
Q 041067 251 -PFIDLIFRRL--SRMKVLIVFDDVTC 274 (770)
Q Consensus 251 -~~~~~l~~~L--~~kr~LlVLDdv~~ 274 (770)
...-.+-+++ +++.+|+++||+-.
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 1122344555 57899999999954
No 459
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.75 E-value=0.063 Score=49.43 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
..+|.|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5789999999999999999887765
No 460
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.72 E-value=0.15 Score=53.77 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=29.9
Q ss_pred HHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 173 EIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 173 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
++.+.+........+|+|.|.+|+|||||+..+...+...
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3444333234467899999999999999999998887654
No 461
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.72 E-value=0.23 Score=49.81 Aligned_cols=37 Identities=35% Similarity=0.378 Sum_probs=25.0
Q ss_pred HHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 169 SKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 169 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
...+.+...+.... +..|+|++|.||||++..+...+
T Consensus 5 ~Q~~Ai~~~~~~~~----~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 5 SQREAIQSALSSNG----ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHHCTSSE-----EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC----CEEEECCCCCChHHHHHHHHHHh
Confidence 34555666664222 78999999999998877777766
No 462
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.72 E-value=0.37 Score=47.37 Aligned_cols=113 Identities=19% Similarity=0.171 Sum_probs=57.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHH-HhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCc-------chHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDK-ISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVM-------PFIDLI 256 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~-------~~~~~l 256 (770)
.+++.|.|..|.||||+.+.++-- +..+ ..+++.+.... + .+.+.+...+...++.. .....+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~--~G~~vpa~~~~------l-~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~ 99 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQ--IGCFVPAEYAT------L-PIFNRLLSRLSNDDSMERNLSTFASEMSET 99 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHH--cCCCcchhhcC------c-cChhheeEecCCccccchhhhHHHHHHHHH
Confidence 468999999999999999988743 1111 11222110000 0 01111111111111000 111122
Q ss_pred HHHH--CCCcEEEEEeCCCC---hHh----HHHHHhcccCCCCCceEEEEcCchhhhhhcC
Q 041067 257 FRRL--SRMKVLIVFDDVTC---LSQ----LQSLIGSLYWLTPVSRIIITTRNKQVLRNWG 308 (770)
Q Consensus 257 ~~~L--~~kr~LlVLDdv~~---~~~----~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~ 308 (770)
...+ ..++-|+++|.... ..+ ...+...+. ..|+.+|+||.+.+++....
T Consensus 100 ~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 100 AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhh
Confidence 2222 35678999999732 222 222333332 23889999999998876643
No 463
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.71 E-value=0.1 Score=54.72 Aligned_cols=36 Identities=31% Similarity=0.295 Sum_probs=28.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
.+++...|.|||||||+|.+.+-........+.-++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS 37 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS 37 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE
Confidence 478999999999999999998877666655444443
No 464
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.69 E-value=5 Score=43.27 Aligned_cols=40 Identities=33% Similarity=0.395 Sum_probs=30.7
Q ss_pred HHHHHhhcCC-------CCCeEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 172 EEIESILGVE-------SKDVYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 172 ~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
++|.++|..+ ...+.+|-.+|.-|.||||-|-.+++.++.
T Consensus 80 eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk 126 (451)
T COG0541 80 EELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK 126 (451)
T ss_pred HHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH
Confidence 4566666531 123678999999999999999999988766
No 465
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.69 E-value=0.043 Score=51.95 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=19.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHH
Q 041067 188 LGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 188 v~I~G~gGiGKTtLA~~~~~~~ 209 (770)
|.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 466
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=93.67 E-value=0.2 Score=52.96 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=33.5
Q ss_pred HHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC------CCceEEEE
Q 041067 174 IESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD------FEGSCFLE 220 (770)
Q Consensus 174 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~ 220 (770)
+..+|..+=..-.++-|+|.+|+||||+|.+++...... =..++|++
T Consensus 84 lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 84 LDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 445554333446788999999999999999998765321 12678887
No 467
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.64 E-value=0.079 Score=49.59 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=25.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhCC-CCceE
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISGD-FEGSC 217 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~ 217 (770)
+++|+|..|+||||++.++...++.+ +...+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~v 32 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVAT 32 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 58899999999999999999987655 44333
No 468
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=93.62 E-value=0.18 Score=55.55 Aligned_cols=85 Identities=19% Similarity=0.214 Sum_probs=50.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCC-CCceEEEEecchhhccCCCHHHHHHHHHHHHh-cCC--------------CC
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGD-FEGSCFLENVREESQRSGGLSCLQQKLLSNLL-KHK--------------NV 249 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~-~~~--------------~~ 249 (770)
..++|.|-.|+|||||+..+...+... =+.++|.- +.+-.. .+..+.+.++..-. ... +.
T Consensus 162 QR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~l-IGERgr---Ev~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~ 237 (494)
T CHL00060 162 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG-VGERTR---EGNDLYMEMKESGVINEQNIAESKVALVYGQMNE 237 (494)
T ss_pred CEEeeecCCCCChhHHHHHHHHHHHHhcCCeEEEEE-eccCch---HHHHHHHHHHhcCccccCcccccceEEEEECCCC
Confidence 358999999999999999998874432 25555543 444322 44555555544110 000 00
Q ss_pred c--------chHHHHHHHHC--CC-cEEEEEeCCCC
Q 041067 250 M--------PFIDLIFRRLS--RM-KVLIVFDDVTC 274 (770)
Q Consensus 250 ~--------~~~~~l~~~L~--~k-r~LlVLDdv~~ 274 (770)
. ...-.+-++++ ++ ++||++||+-.
T Consensus 238 p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR 273 (494)
T CHL00060 238 PPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFR 273 (494)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchH
Confidence 1 12234566663 44 89999999954
No 469
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=93.62 E-value=0.054 Score=51.71 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
.|.|+|++|.||||+|+.+.+++
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999999876
No 470
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=93.60 E-value=0.22 Score=52.95 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=33.7
Q ss_pred HHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhC------CCCceEEEE
Q 041067 172 EEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISG------DFEGSCFLE 220 (770)
Q Consensus 172 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~ 220 (770)
..+..+|..+-..-.++-|+|.+|+|||+||..++-...- .-..++|++
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId 164 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 164 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEE
Confidence 4455556544345678899999999999999988754321 112678887
No 471
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=0.13 Score=53.79 Aligned_cols=72 Identities=18% Similarity=0.323 Sum_probs=49.0
Q ss_pred chhhHHHHhHhhhhhccccccccCCCCCCCcccchHHHHHHHHhhcCCC----------CCeEEEEEEecCCCcHHHHHH
Q 041067 134 RHESEFINEVGNDILKRLDEVFRPRDNKNKLVGVESKVEEIESILGVES----------KDVYSLGIWGIGGIGKTTIAR 203 (770)
Q Consensus 134 ~~e~~~i~~i~~~i~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~----------~~~~vv~I~G~gGiGKTtLA~ 203 (770)
.+++.+++.+-.+|..+ ++-..=+++.|.++.++-|.+....+- .-=+-|..+|++|.|||-||+
T Consensus 189 ~~d~~Lve~lerdIl~~-----np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAK 263 (491)
T KOG0738|consen 189 GYDADLVEALERDILQR-----NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAK 263 (491)
T ss_pred cchHHHHHHHHHHHhcc-----CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHH
Confidence 34555665555566544 333444578898888887777664221 113458899999999999999
Q ss_pred HHHHHHh
Q 041067 204 AIFDKIS 210 (770)
Q Consensus 204 ~~~~~~~ 210 (770)
+||..-.
T Consensus 264 AvATEc~ 270 (491)
T KOG0738|consen 264 AVATECG 270 (491)
T ss_pred HHHHhhc
Confidence 9998754
No 472
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.59 E-value=0.12 Score=51.35 Aligned_cols=112 Identities=13% Similarity=0.055 Sum_probs=58.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHH-HHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCc-------chHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFD-KISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVM-------PFIDLI 256 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~-------~~~~~l 256 (770)
.+++.|.|..|.||||+.+.+.- .+..+-...+|-..+. .. ...+++..+...++-. .-...+
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~--~~-------~~~~i~~~~~~~d~~~~~~StF~~e~~~~ 101 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSAT--LS-------IFDSVLTRMGASDSIQHGMSTFMVELSET 101 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceE--Ee-------ccceEEEEecCccccccccchHHHHHHHH
Confidence 45789999999999999999986 3333322222221000 00 0011111111110000 122334
Q ss_pred HHHHC--CCcEEEEEeCCCC----hHh---HHHHHhcccCCCCCceEEEEcCchhhhhh
Q 041067 257 FRRLS--RMKVLIVFDDVTC----LSQ---LQSLIGSLYWLTPVSRIIITTRNKQVLRN 306 (770)
Q Consensus 257 ~~~L~--~kr~LlVLDdv~~----~~~---~~~l~~~~~~~~~gs~IivTTR~~~v~~~ 306 (770)
.+.++ +++-|+++|.... .+. ...+...+... .++.+|++|.+.+++..
T Consensus 102 ~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 102 SHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHH
Confidence 44443 5789999999732 111 12233333222 57899999999988654
No 473
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.57 E-value=0.14 Score=51.77 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=35.4
Q ss_pred HHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 173 EIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 173 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
.|.++|..+=..-.++.|.|.+|.|||++|.++.......-+.++|++
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 344555444445678999999999999999998766434556777876
No 474
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.55 E-value=0.074 Score=55.05 Aligned_cols=28 Identities=36% Similarity=0.413 Sum_probs=24.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 183 KDVYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
..+.+|||.|..|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999998876654
No 475
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.55 E-value=0.049 Score=52.52 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 478999999999999999999853
No 476
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.54 E-value=0.15 Score=51.28 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=34.1
Q ss_pred HHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 173 EIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 173 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
.+.++|..+=..-..+.|.|.+|.||||+|..+.......-..++|+.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 344445333334568999999999999999998765444456777876
No 477
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.53 E-value=0.0063 Score=68.84 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=13.2
Q ss_pred ccCCCCCCcEEEccCCCCc
Q 041067 718 CLAQFSSPIILNLAKTNIE 736 (770)
Q Consensus 718 ~l~~l~~L~~L~L~~~~l~ 736 (770)
.+..+++|+.+.+.++...
T Consensus 357 ~~~~~~~l~~~~l~~~~~~ 375 (482)
T KOG1947|consen 357 ILRSCPKLTDLSLSYCGIS 375 (482)
T ss_pred HHhcCCCcchhhhhhhhcc
Confidence 3467778888888777643
No 478
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=93.53 E-value=0.15 Score=53.37 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=34.7
Q ss_pred CCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC
Q 041067 162 NKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDF 213 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 213 (770)
+.++=..+....+...+..+ +.|.|.|.+|+||||+|+.++..+...|
T Consensus 45 ~~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 34444444556666666432 3599999999999999999999876544
No 479
>PRK04182 cytidylate kinase; Provisional
Probab=93.52 E-value=0.058 Score=51.87 Aligned_cols=23 Identities=43% Similarity=0.592 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
+|+|.|+.|.||||+|+.+++++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999875
No 480
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.51 E-value=0.11 Score=59.36 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=39.1
Q ss_pred CCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 161 KNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
++..+-|.+..+.|.+........-.+|.|+|++|.||||+|+.++.++..
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 345666777677666666544455668999999999999999999998764
No 481
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.50 E-value=0.087 Score=44.46 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
++.+.|.+|+||||+|..+...++.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999998765
No 482
>PRK08149 ATP synthase SpaL; Validated
Probab=93.50 E-value=0.22 Score=54.26 Aligned_cols=83 Identities=14% Similarity=0.231 Sum_probs=46.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhc--------CCCCc-------
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLK--------HKNVM------- 250 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~--------~~~~~------- 250 (770)
..++|+|..|+|||||++.++.... -+..++.. +.+ ....+..+..+.+..... ..+..
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~~--~dv~v~g~-Ig~---rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHSE--ADVFVIGL-IGE---RGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCCC--CCeEEEEE-Eee---CCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 4689999999999999998886432 22223221 222 122455555555442111 11111
Q ss_pred -chHHHHHHHH--CCCcEEEEEeCCCC
Q 041067 251 -PFIDLIFRRL--SRMKVLIVFDDVTC 274 (770)
Q Consensus 251 -~~~~~l~~~L--~~kr~LlVLDdv~~ 274 (770)
.....+-+++ +++++|+++||+-.
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 1222344444 58999999999854
No 483
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.49 E-value=0.084 Score=53.24 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=19.9
Q ss_pred EEecCCCcHHHHHHHHHHHHhCC
Q 041067 190 IWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 190 I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
|+|++|+||||+++.+.+....+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~ 23 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN 23 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999987655
No 484
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.47 E-value=0.082 Score=54.89 Aligned_cols=27 Identities=33% Similarity=0.588 Sum_probs=23.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
+.|+|+|-||+||||+|..++..+...
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~ 27 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEM 27 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 468999999999999999999876544
No 485
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.43 E-value=0.058 Score=53.26 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=22.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
-.+|+|+|+.|+||||||+.++...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3579999999999999999999864
No 486
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.42 E-value=0.11 Score=51.36 Aligned_cols=38 Identities=21% Similarity=0.376 Sum_probs=29.3
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 182 SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
..++++|+++|..|+|||||..++........ .+.++.
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~-~v~v~~ 56 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEV-KIAVIE 56 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCC-eEEEEE
Confidence 34699999999999999999999988755433 344443
No 487
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.41 E-value=0.24 Score=53.25 Aligned_cols=107 Identities=20% Similarity=0.121 Sum_probs=61.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCC-Cc-eEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCC
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDF-EG-SCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRM 263 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~k 263 (770)
..|.|.|..|.||||+++.+.+.+.... +. .+-+++..+... . +...+....-.++. .+.......++..|+..
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~-~-~~~~~~~~~q~evg--~~~~~~~~~l~~aLR~~ 225 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYIL-G-SPDDLLPPAQSQIG--RDVDSFANGIRLALRRA 225 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhcc-C-CCceeecccccccC--CCccCHHHHHHHhhccC
Confidence 4688999999999999999998875433 22 333332222111 0 11101000000111 11224566788888888
Q ss_pred cEEEEEeCCCChHhHHHHHhcccCCCCCceEEEEcC
Q 041067 264 KVLIVFDDVTCLSQLQSLIGSLYWLTPVSRIIITTR 299 (770)
Q Consensus 264 r~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR 299 (770)
+=.|+++.+.+.+.++..+... ..|-.++-|-.
T Consensus 226 PD~I~vGEiRd~et~~~al~aa---~TGH~v~tTlH 258 (372)
T TIGR02525 226 PKIIGVGEIRDLETFQAAVLAG---QSGHFCLGTLH 258 (372)
T ss_pred CCEEeeCCCCCHHHHHHHHHHH---hcCCcEEEeeC
Confidence 9999999999998877654442 33434444433
No 488
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.41 E-value=3.9 Score=42.72 Aligned_cols=140 Identities=10% Similarity=0.115 Sum_probs=79.9
Q ss_pred HHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhC---------CCC-ceEEEEecchhhccCCCHHHHHHHHHH
Q 041067 172 EEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISG---------DFE-GSCFLENVREESQRSGGLSCLQQKLLS 241 (770)
Q Consensus 172 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~---------~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~ 241 (770)
+.+...+..+ .-..+.-++|..|+||+++|+++.+.+-. ..+ ...+++ ..+. .. .+..+. ++..
T Consensus 6 ~~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~g~--~i-~vd~Ir-~l~~ 79 (299)
T PRK07132 6 KFLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IFDK--DL-SKSEFL-SAIN 79 (299)
T ss_pred HHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cCCC--cC-CHHHHH-HHHH
Confidence 3444444322 22456779999999999999999998611 111 122221 1011 11 222222 1222
Q ss_pred HHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH--hHHHHHhcccCCCCCceEEEEcC-chhhhhh-cCcceEEEeCc
Q 041067 242 NLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS--QLQSLIGSLYWLTPVSRIIITTR-NKQVLRN-WGVRKIYEMKA 317 (770)
Q Consensus 242 ~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR-~~~v~~~-~~~~~~~~l~~ 317 (770)
.+.-.. .-.+.+=++|+||++... ....++..+....+++.+|++|. ...+.+. ......+++.+
T Consensus 80 ~~~~~~-----------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~ 148 (299)
T PRK07132 80 KLYFSS-----------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKE 148 (299)
T ss_pred HhccCC-----------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCC
Confidence 211000 001466688888887654 46677777776677777776554 4444443 33467899999
Q ss_pred cChHHHHHHHH
Q 041067 318 LEYHHAIELFI 328 (770)
Q Consensus 318 L~~~ea~~Lf~ 328 (770)
+++++..+.+.
T Consensus 149 l~~~~l~~~l~ 159 (299)
T PRK07132 149 PDQQKILAKLL 159 (299)
T ss_pred CCHHHHHHHHH
Confidence 99999887764
No 489
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.40 E-value=0.066 Score=47.45 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=19.3
Q ss_pred EEEEecCCCcHHHHHHHHHHH
Q 041067 188 LGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 188 v~I~G~gGiGKTtLA~~~~~~ 208 (770)
|.|+|..|+|||||.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999864
No 490
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.38 E-value=0.12 Score=50.26 Aligned_cols=42 Identities=29% Similarity=0.306 Sum_probs=32.0
Q ss_pred CCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHH
Q 041067 162 NKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFD 207 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 207 (770)
.+++|.+..+..+.-.... ..-+.++|.+|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG----~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG----GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC----C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC----CCCeEEECCCCCCHHHHHHHHHH
Confidence 4688988888887766542 24789999999999999999875
No 491
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.38 E-value=0.18 Score=52.27 Aligned_cols=59 Identities=25% Similarity=0.209 Sum_probs=45.4
Q ss_pred CCCCCcccchHHHHH---HHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceE
Q 041067 159 DNKNKLVGVESKVEE---IESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSC 217 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~ 217 (770)
...+.+||..+..+. +.+++..+.-.-+.|.|+|++|.|||.||-.+.+.+...-+.+.
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~ 97 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA 97 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCcee
Confidence 456789998876665 56666655445678999999999999999999999876655443
No 492
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.38 E-value=0.0096 Score=67.32 Aligned_cols=65 Identities=23% Similarity=0.309 Sum_probs=35.3
Q ss_pred cCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCC-CCCcccC----ccCCCCCCCcEEEecCCCC
Q 041067 577 HYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGS-KSLKRLP----SRIFNLEFLTKLNLSGCSK 642 (770)
Q Consensus 577 ~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~-~~l~~lp----~~i~~l~~L~~L~L~~~~~ 642 (770)
..++|+.+.+..|..+ ............++|+.|++++| ......+ .....+++|+.|++++|..
T Consensus 186 ~~~~L~~l~l~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 255 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKI-TDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL 255 (482)
T ss_pred hCchhhHhhhcccccC-ChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc
Confidence 3677888888877655 22111123445677788888763 2222111 1222346677777776653
No 493
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=93.37 E-value=0.12 Score=45.65 Aligned_cols=33 Identities=30% Similarity=0.413 Sum_probs=25.5
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 188 LGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 188 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
|.+.|.||+||||++..++..+...-..+..++
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id 34 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAID 34 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 789999999999999999988765433344343
No 494
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.35 E-value=0.072 Score=52.40 Aligned_cols=22 Identities=45% Similarity=0.652 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFD 207 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~ 207 (770)
.++||+|..|.||||||+.++-
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 3799999999999999999974
No 495
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.35 E-value=0.075 Score=52.34 Aligned_cols=22 Identities=36% Similarity=0.080 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFD 207 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~ 207 (770)
.+++|.|..|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999983
No 496
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.32 E-value=0.11 Score=56.48 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=36.0
Q ss_pred CcccchHHHHHHHHhhc-------C---CC--C----CeEEEEEEecCCCcHHHHHHHHHHHHhCCC
Q 041067 163 KLVGVESKVEEIESILG-------V---ES--K----DVYSLGIWGIGGIGKTTIARAIFDKISGDF 213 (770)
Q Consensus 163 ~~vGr~~~~~~l~~~L~-------~---~~--~----~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 213 (770)
.++|.++.++.+...+. . .. + ....|.++|++|+|||++|+.++......|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf 144 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPF 144 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCe
Confidence 47888888877755441 1 11 1 125799999999999999999998764433
No 497
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.30 E-value=0.065 Score=50.71 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=18.0
Q ss_pred EEEEecCCCcHHHHHHHHHHH
Q 041067 188 LGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 188 v~I~G~gGiGKTtLA~~~~~~ 208 (770)
|+|.|..|+|||||++.+..+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 498
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.29 E-value=0.054 Score=52.47 Aligned_cols=21 Identities=29% Similarity=0.058 Sum_probs=18.8
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFD 207 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~ 207 (770)
++.|.|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999983
No 499
>PRK14526 adenylate kinase; Provisional
Probab=93.28 E-value=0.34 Score=47.84 Aligned_cols=22 Identities=36% Similarity=0.515 Sum_probs=19.8
Q ss_pred EEEEecCCCcHHHHHHHHHHHH
Q 041067 188 LGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 188 v~I~G~gGiGKTtLA~~~~~~~ 209 (770)
|.|+|++|+||||+|+.++...
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998764
No 500
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.27 E-value=0.72 Score=49.23 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=28.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
..++++++|+.|+||||++..++.....+-..+.+++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4679999999999999999999877644433455554
Done!