Query 041067
Match_columns 770
No_of_seqs 546 out of 4618
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 05:14:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041067.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041067hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 7.4E-42 2.5E-46 389.6 21.5 277 165-453 131-472 (549)
2 3jrn_A AT1G72930 protein; TIR 100.0 1.2E-39 4.2E-44 303.8 7.2 144 6-153 23-172 (176)
3 3ozi_A L6TR; plant TIR domain, 100.0 3.9E-39 1.3E-43 304.6 7.0 147 5-153 49-202 (204)
4 1vt4_I APAF-1 related killer D 100.0 1.3E-36 4.6E-41 349.4 15.1 264 162-445 128-436 (1221)
5 3sfz_A APAF-1, apoptotic pepti 100.0 7.4E-36 2.5E-40 375.6 22.3 287 156-452 118-452 (1249)
6 1z6t_A APAF-1, apoptotic prote 100.0 1.2E-33 4.2E-38 326.6 21.7 281 156-448 118-448 (591)
7 4fcg_A Uncharacterized protein 99.9 5.2E-24 1.8E-28 226.7 18.6 235 503-763 79-317 (328)
8 3rgz_A Protein brassinosteroid 99.9 6.1E-24 2.1E-28 252.6 18.6 261 497-765 410-723 (768)
9 1ogq_A PGIP-2, polygalacturona 99.9 4.4E-24 1.5E-28 225.8 11.4 251 505-765 50-310 (313)
10 3rgz_A Protein brassinosteroid 99.9 1.7E-23 6E-28 248.7 15.8 263 500-765 338-699 (768)
11 4fcg_A Uncharacterized protein 99.9 6.2E-23 2.1E-27 218.3 18.3 230 480-738 82-316 (328)
12 3v47_A TOLL-like receptor 5B a 99.9 2.7E-22 9.4E-27 223.9 23.4 133 631-763 276-412 (455)
13 4eco_A Uncharacterized protein 99.9 1.4E-23 4.9E-28 243.7 13.3 227 533-764 205-474 (636)
14 3o6n_A APL1; leucine-rich repe 99.9 4.3E-22 1.5E-26 217.6 23.1 253 496-763 60-334 (390)
15 2z7x_B TOLL-like receptor 1, v 99.9 2.2E-22 7.5E-27 228.8 20.5 259 495-764 35-461 (520)
16 4eco_A Uncharacterized protein 99.9 1.9E-22 6.5E-27 234.3 20.1 244 500-757 325-598 (636)
17 2id5_A Lingo-1, leucine rich r 99.9 6.4E-22 2.2E-26 222.3 23.5 256 494-757 45-331 (477)
18 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.8E-22 1.6E-26 228.1 22.9 260 493-764 64-490 (562)
19 3oja_B Anopheles plasmodium-re 99.9 5.5E-22 1.9E-26 229.0 23.1 254 495-763 65-340 (597)
20 4ecn_A Leucine-rich repeat pro 99.9 7.7E-22 2.6E-26 233.4 23.6 146 607-757 674-838 (876)
21 4ecn_A Leucine-rich repeat pro 99.9 4.3E-22 1.5E-26 235.6 18.7 229 535-769 574-829 (876)
22 1xku_A Decorin; proteoglycan, 99.9 3.3E-21 1.1E-25 205.5 23.9 251 496-757 67-330 (330)
23 3v47_A TOLL-like receptor 5B a 99.9 1E-21 3.5E-26 219.3 20.2 274 481-764 32-388 (455)
24 2ft3_A Biglycan; proteoglycan, 99.9 2.1E-21 7E-26 207.3 21.2 251 495-757 68-331 (332)
25 3vq2_A TLR4, TOLL-like recepto 99.9 1.5E-21 5.3E-26 226.1 20.7 112 652-764 424-538 (606)
26 3t6q_A CD180 antigen; protein- 99.9 3.2E-21 1.1E-25 223.5 22.4 256 494-757 46-387 (606)
27 2z81_A CD282 antigen, TOLL-lik 99.9 5E-22 1.7E-26 227.4 14.8 261 495-764 40-427 (549)
28 4fmz_A Internalin; leucine ric 99.9 7.6E-21 2.6E-25 204.2 22.8 246 501-764 62-328 (347)
29 3vq2_A TLR4, TOLL-like recepto 99.9 3.6E-21 1.2E-25 223.1 21.1 247 500-758 302-557 (606)
30 3o6n_A APL1; leucine-rich repe 99.9 8.6E-21 2.9E-25 207.3 22.2 248 494-757 82-350 (390)
31 1xku_A Decorin; proteoglycan, 99.9 9.9E-21 3.4E-25 201.8 21.7 241 505-757 52-304 (330)
32 3t6q_A CD180 antigen; protein- 99.9 1.9E-20 6.5E-25 216.9 25.0 90 496-590 96-190 (606)
33 1ogq_A PGIP-2, polygalacturona 99.9 1.1E-21 3.7E-26 207.4 13.0 227 534-765 50-287 (313)
34 3oja_B Anopheles plasmodium-re 99.9 1.4E-20 4.9E-25 217.1 22.0 248 494-757 88-356 (597)
35 2z7x_B TOLL-like receptor 1, v 99.9 5.3E-21 1.8E-25 217.3 17.5 125 505-641 21-149 (520)
36 2ft3_A Biglycan; proteoglycan, 99.8 2.2E-20 7.6E-25 199.2 19.8 240 505-757 54-305 (332)
37 3j0a_A TOLL-like receptor 5; m 99.8 1.9E-20 6.4E-25 224.9 21.1 264 495-766 38-381 (844)
38 4fmz_A Internalin; leucine ric 99.8 3.3E-20 1.1E-24 199.2 20.1 238 500-757 105-344 (347)
39 2id5_A Lingo-1, leucine rich r 99.8 3.5E-20 1.2E-24 208.2 20.9 250 505-764 32-313 (477)
40 1jl5_A Outer protein YOPM; leu 99.8 1.3E-20 4.5E-25 209.3 17.2 245 498-769 27-279 (454)
41 3bz5_A Internalin-J, INLJ; leu 99.8 6E-20 2.1E-24 204.1 21.8 235 500-764 59-304 (457)
42 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.3E-20 1.1E-24 212.8 20.2 126 505-642 52-181 (562)
43 3zyi_A Leucine-rich repeat-con 99.8 7.2E-20 2.5E-24 204.0 22.3 219 534-757 75-301 (452)
44 2z66_A Variable lymphocyte rec 99.8 2.6E-20 9E-25 196.3 17.7 224 505-736 28-261 (306)
45 1o6v_A Internalin A; bacterial 99.8 6.2E-20 2.1E-24 205.4 21.4 100 652-757 265-364 (466)
46 3zyj_A Leucine-rich repeat-con 99.8 9.9E-20 3.4E-24 202.1 22.9 219 534-757 64-290 (440)
47 1ozn_A Reticulon 4 receptor; N 99.8 1E-19 3.6E-24 189.6 21.6 200 534-757 32-236 (285)
48 3bz5_A Internalin-J, INLJ; leu 99.8 1.8E-19 6.1E-24 200.3 23.9 239 501-766 81-358 (457)
49 3j0a_A TOLL-like receptor 5; m 99.8 6.8E-20 2.3E-24 220.0 21.5 262 497-769 65-403 (844)
50 2z63_A TOLL-like receptor 4, v 99.8 4.9E-20 1.7E-24 211.9 19.2 92 671-763 417-510 (570)
51 2z80_A TOLL-like receptor 2, v 99.8 1.7E-20 6E-25 201.9 14.4 249 505-760 52-315 (353)
52 2z66_A Variable lymphocyte rec 99.8 1.2E-20 4.1E-25 198.9 12.6 219 534-757 28-259 (306)
53 1jl5_A Outer protein YOPM; leu 99.8 4.6E-19 1.6E-23 196.9 25.9 212 535-769 174-418 (454)
54 1o6v_A Internalin A; bacterial 99.8 1.4E-19 4.8E-24 202.5 21.8 240 501-763 86-347 (466)
55 3o53_A Protein LRIM1, AGAP0063 99.8 1.8E-21 6.3E-26 206.2 5.2 246 499-762 28-278 (317)
56 2z81_A CD282 antigen, TOLL-lik 99.8 3.6E-20 1.2E-24 212.0 15.9 251 505-764 26-404 (549)
57 1ziw_A TOLL-like receptor 3; i 99.8 3.8E-19 1.3E-23 208.9 21.5 255 495-757 39-364 (680)
58 3g06_A SSPH2 (leucine-rich rep 99.8 1.5E-18 5.2E-23 198.7 25.8 220 505-757 61-295 (622)
59 3zyi_A Leucine-rich repeat-con 99.8 4.2E-19 1.4E-23 197.8 20.3 223 505-736 75-303 (452)
60 1ziw_A TOLL-like receptor 3; i 99.8 1E-18 3.4E-23 205.3 24.0 260 496-764 263-577 (680)
61 3oja_A Leucine-rich immune mol 99.8 4.2E-20 1.4E-24 207.2 10.7 234 503-754 32-270 (487)
62 2z63_A TOLL-like receptor 4, v 99.8 2.1E-19 7.2E-24 206.5 16.6 257 498-765 275-537 (570)
63 3zyj_A Leucine-rich repeat-con 99.8 6.8E-19 2.3E-23 195.4 19.5 223 505-736 64-292 (440)
64 3g06_A SSPH2 (leucine-rich rep 99.8 3.1E-18 1.1E-22 196.2 24.7 221 505-763 40-277 (622)
65 1ozn_A Reticulon 4 receptor; N 99.8 5.4E-19 1.8E-23 184.2 16.0 243 504-756 31-284 (285)
66 3h16_A TIR protein; bacteria T 99.8 3.1E-21 1.1E-25 179.8 -1.5 97 6-102 34-136 (154)
67 2z80_A TOLL-like receptor 2, v 99.8 4.3E-19 1.5E-23 191.0 13.4 246 481-737 54-315 (353)
68 3o53_A Protein LRIM1, AGAP0063 99.8 5.9E-20 2E-24 194.5 4.2 224 494-734 47-273 (317)
69 1wwl_A Monocyte differentiatio 99.8 1.5E-20 5.2E-25 198.6 -0.3 240 501-757 39-307 (312)
70 4g8a_A TOLL-like receptor 4; l 99.8 6.3E-18 2.1E-22 196.7 20.8 111 652-763 445-558 (635)
71 2z62_A TOLL-like receptor 4, v 99.8 9.8E-18 3.3E-22 173.7 19.0 206 546-757 19-235 (276)
72 1p9a_G Platelet glycoprotein I 99.8 1.2E-17 4.1E-22 174.1 18.4 193 534-736 10-208 (290)
73 1h6u_A Internalin H; cell adhe 99.8 1E-17 3.6E-22 176.3 16.9 192 534-739 41-233 (308)
74 3oja_A Leucine-rich immune mol 99.7 9.2E-18 3.2E-22 188.2 15.8 212 533-759 33-250 (487)
75 2o6q_A Variable lymphocyte rec 99.7 8.1E-17 2.8E-21 166.1 21.3 196 535-736 17-218 (270)
76 2xwt_C Thyrotropin receptor; s 99.7 9.9E-18 3.4E-22 169.7 13.7 206 546-759 23-239 (239)
77 3rfs_A Internalin B, repeat mo 99.7 1.1E-17 3.9E-22 172.8 14.4 198 534-763 41-239 (272)
78 2o6q_A Variable lymphocyte rec 99.7 9.4E-17 3.2E-21 165.7 21.1 193 506-710 17-216 (270)
79 1wwl_A Monocyte differentiatio 99.7 1.3E-18 4.3E-23 183.8 5.8 224 534-764 43-291 (312)
80 3rfs_A Internalin B, repeat mo 99.7 6.1E-17 2.1E-21 167.3 18.2 200 556-764 19-223 (272)
81 1h6u_A Internalin H; cell adhe 99.7 2E-17 7E-22 174.1 14.6 192 501-711 37-229 (308)
82 1p9a_G Platelet glycoprotein I 99.7 2.4E-16 8.3E-21 164.2 20.0 197 501-712 6-208 (290)
83 4ay9_X Follicle-stimulating ho 99.7 1E-16 3.5E-21 172.0 15.8 233 508-755 12-255 (350)
84 2z62_A TOLL-like receptor 4, v 99.7 5.7E-16 2E-20 160.3 18.4 199 534-736 28-237 (276)
85 4glp_A Monocyte differentiatio 99.7 5.9E-17 2E-21 170.9 10.8 196 557-757 92-305 (310)
86 2ast_B S-phase kinase-associat 99.7 8.5E-18 2.9E-22 179.4 2.0 223 535-763 71-310 (336)
87 2ca6_A RAN GTPase-activating p 99.7 2.7E-18 9.4E-23 187.1 -1.9 228 498-757 25-314 (386)
88 1h6t_A Internalin B; cell adhe 99.7 5.5E-16 1.9E-20 161.7 15.1 187 556-757 24-211 (291)
89 2xwt_C Thyrotropin receptor; s 99.7 6.7E-16 2.3E-20 156.2 14.8 197 559-764 14-222 (239)
90 3cvr_A Invasion plasmid antige 99.6 1.2E-15 4.2E-20 172.5 16.9 186 535-745 60-253 (571)
91 1m9s_A Internalin B; cell inva 99.6 9.8E-16 3.4E-20 175.2 15.7 187 556-757 21-208 (605)
92 3cvr_A Invasion plasmid antige 99.6 1.7E-15 5.8E-20 171.4 16.7 188 506-723 60-254 (571)
93 4g8a_A TOLL-like receptor 4; l 99.6 3.8E-15 1.3E-19 173.1 20.3 245 501-757 324-578 (635)
94 3m19_A Variable lymphocyte rec 99.6 5.7E-15 1.9E-19 150.5 18.9 174 535-736 15-192 (251)
95 4ay9_X Follicle-stimulating ho 99.6 4.2E-15 1.5E-19 159.4 18.0 218 540-764 15-241 (350)
96 3m19_A Variable lymphocyte rec 99.6 9.2E-15 3.1E-19 148.9 19.1 173 579-757 14-190 (251)
97 4ezg_A Putative uncharacterize 99.6 9E-16 3.1E-20 150.2 11.0 150 603-757 41-192 (197)
98 2ast_B S-phase kinase-associat 99.6 9.9E-17 3.4E-21 171.2 3.7 198 556-756 70-282 (336)
99 4glp_A Monocyte differentiatio 99.6 1.1E-15 3.7E-20 161.1 9.6 194 534-736 91-307 (310)
100 2fna_A Conserved hypothetical 99.6 3.6E-14 1.2E-18 152.4 21.6 271 156-444 7-355 (357)
101 2qen_A Walker-type ATPase; unk 99.6 2.2E-14 7.6E-19 153.7 19.4 270 156-445 6-348 (350)
102 1m9s_A Internalin B; cell inva 99.6 1.7E-15 5.8E-20 173.3 10.0 171 555-739 42-213 (605)
103 1h6t_A Internalin B; cell adhe 99.6 8.6E-15 2.9E-19 152.5 12.6 168 534-737 46-214 (291)
104 1xeu_A Internalin C; cellular 99.6 1.1E-14 3.6E-19 149.4 12.2 173 554-740 17-189 (263)
105 2ca6_A RAN GTPase-activating p 99.6 6.6E-16 2.3E-20 168.2 2.4 206 555-761 31-288 (386)
106 3ub2_A TOLL/interleukin-1 rece 99.5 1.8E-16 6.3E-21 145.0 -2.6 105 12-119 37-145 (146)
107 1z7x_W Ribonuclease inhibitor; 99.5 4E-17 1.4E-21 182.3 -8.7 257 499-757 50-352 (461)
108 1dce_A Protein (RAB geranylger 99.5 1.9E-16 6.4E-21 180.1 -3.4 193 554-752 347-566 (567)
109 1z7x_W Ribonuclease inhibitor; 99.5 7.4E-17 2.5E-21 180.1 -7.1 245 506-760 86-383 (461)
110 3goz_A Leucine-rich repeat-con 99.5 4.1E-16 1.4E-20 168.2 -2.4 233 498-736 15-297 (362)
111 2v70_A SLIT-2, SLIT homolog 2 99.5 2E-13 6.9E-18 135.9 15.9 147 582-736 14-166 (220)
112 1xeu_A Internalin C; cellular 99.5 3.1E-14 1.1E-18 145.9 9.1 171 577-763 17-188 (263)
113 2v9t_B SLIT homolog 2 protein 99.5 3.6E-13 1.2E-17 134.0 16.2 148 582-736 14-165 (220)
114 1w5s_A Origin recognition comp 99.5 7.8E-13 2.7E-17 145.1 20.3 262 158-430 18-371 (412)
115 3e6j_A Variable lymphocyte rec 99.5 3.8E-13 1.3E-17 134.8 15.9 148 581-736 21-172 (229)
116 4ezg_A Putative uncharacterize 99.5 8.1E-14 2.8E-18 136.2 10.7 82 652-736 112-194 (197)
117 3goz_A Leucine-rich repeat-con 99.5 2E-15 7E-20 162.7 -2.1 242 510-757 3-295 (362)
118 2o6s_A Variable lymphocyte rec 99.5 6.5E-13 2.2E-17 131.0 15.6 175 559-747 10-190 (208)
119 2o6s_A Variable lymphocyte rec 99.5 1.4E-12 4.9E-17 128.5 17.5 152 605-764 27-183 (208)
120 2v70_A SLIT-2, SLIT homolog 2 99.4 7.6E-13 2.6E-17 131.6 14.4 149 538-713 15-167 (220)
121 1dce_A Protein (RAB geranylger 99.4 1.4E-15 4.7E-20 173.0 -6.6 180 575-764 345-550 (567)
122 2ell_A Acidic leucine-rich nuc 99.4 4.5E-13 1.5E-17 127.3 11.3 134 606-764 24-164 (168)
123 3ogk_B Coronatine-insensitive 99.4 5.4E-15 1.8E-19 170.6 -3.5 251 501-760 216-526 (592)
124 2xot_A Amphoterin-induced prot 99.4 1.8E-12 6.1E-17 139.5 15.7 167 582-757 21-200 (361)
125 2v9t_B SLIT homolog 2 protein 99.4 3.3E-12 1.1E-16 127.0 16.1 147 559-711 14-164 (220)
126 2xot_A Amphoterin-induced prot 99.4 1.8E-12 6.1E-17 139.5 14.8 172 558-736 20-202 (361)
127 2wfh_A SLIT homolog 2 protein 99.4 3.2E-12 1.1E-16 124.2 14.5 123 609-735 13-138 (193)
128 3e6j_A Variable lymphocyte rec 99.4 5.5E-12 1.9E-16 126.3 15.7 147 561-714 24-174 (229)
129 1w8a_A SLIT protein; signaling 99.4 3.5E-12 1.2E-16 124.0 13.7 124 609-736 11-139 (192)
130 3ogk_B Coronatine-insensitive 99.4 4.6E-14 1.6E-18 162.7 0.3 176 501-683 160-350 (592)
131 2qby_B CDC6 homolog 3, cell di 99.4 1.2E-10 4.2E-15 126.2 26.3 257 162-430 20-339 (384)
132 2ell_A Acidic leucine-rich nuc 99.4 2.3E-12 7.7E-17 122.3 10.8 140 576-741 21-165 (168)
133 2v1u_A Cell division control p 99.3 1.7E-10 5.8E-15 125.1 26.8 259 159-430 16-351 (387)
134 2je0_A Acidic leucine-rich nuc 99.3 1.2E-12 4E-17 121.6 7.9 128 605-755 16-149 (149)
135 4b8c_D Glucose-repressible alc 99.3 1.5E-13 5.1E-18 161.2 1.4 118 572-695 217-336 (727)
136 4b8c_D Glucose-repressible alc 99.3 7E-13 2.4E-17 155.4 5.8 147 601-756 219-369 (727)
137 1a9n_A U2A', U2A'; complex (nu 99.3 3.5E-12 1.2E-16 122.0 8.8 128 603-757 16-151 (176)
138 2qby_A CDC6 homolog 1, cell di 99.3 1.6E-10 5.4E-15 125.3 22.7 261 158-430 16-348 (386)
139 2p1m_B Transport inhibitor res 99.3 3.7E-14 1.3E-18 163.5 -8.2 128 503-638 103-243 (594)
140 2j67_A TOLL like receptor 10; 99.3 2.5E-13 8.6E-18 128.4 -1.6 71 12-82 63-134 (178)
141 1fyx_A TOLL-like receptor 2; b 99.3 1.6E-13 5.6E-18 126.3 -3.5 75 13-87 34-110 (149)
142 2js7_A Myeloid differentiation 99.2 2.7E-13 9.2E-18 126.2 -2.3 70 14-83 45-116 (160)
143 1w8a_A SLIT protein; signaling 99.2 4.5E-11 1.5E-15 116.0 13.4 125 582-713 11-140 (192)
144 2o6r_A Variable lymphocyte rec 99.2 6.3E-11 2.1E-15 113.4 14.1 125 608-736 9-137 (177)
145 1t3g_A X-linked interleukin-1 99.2 1.5E-12 5.3E-17 120.9 1.7 71 14-84 42-114 (159)
146 2p1m_B Transport inhibitor res 99.2 3.5E-13 1.2E-17 155.4 -3.4 61 698-758 455-518 (594)
147 1fnn_A CDC6P, cell division co 99.2 5.9E-10 2E-14 121.0 21.5 288 160-452 15-387 (389)
148 2je0_A Acidic leucine-rich nuc 99.2 2.4E-11 8.1E-16 112.7 8.9 110 652-764 17-130 (149)
149 2wfh_A SLIT homolog 2 protein 99.2 1.3E-10 4.5E-15 112.8 13.2 124 633-757 13-137 (193)
150 1a9n_A U2A', U2A'; complex (nu 99.2 3.2E-11 1.1E-15 115.3 8.2 131 575-736 15-153 (176)
151 2o6r_A Variable lymphocyte rec 99.1 7.9E-10 2.7E-14 105.6 14.2 124 633-757 10-135 (177)
152 1njg_A DNA polymerase III subu 99.1 1.9E-09 6.6E-14 108.4 16.7 158 160-328 21-195 (250)
153 2r9u_A Variable lymphocyte rec 99.1 5.4E-10 1.8E-14 106.4 11.6 107 632-740 14-122 (174)
154 1ds9_A Outer arm dynein; leuci 99.1 1.2E-12 4.2E-17 127.9 -7.1 130 619-752 37-180 (198)
155 3g39_A Variable lymphocyte rec 99.1 6.8E-10 2.3E-14 105.3 11.4 106 631-737 10-116 (170)
156 1ds9_A Outer arm dynein; leuci 99.0 1.9E-12 6.3E-17 126.6 -8.4 128 602-736 44-185 (198)
157 3g39_A Variable lymphocyte rec 99.0 1.6E-09 5.5E-14 102.7 11.5 102 607-711 10-114 (170)
158 2chg_A Replication factor C sm 99.0 7.1E-09 2.4E-13 102.6 16.1 152 160-328 15-171 (226)
159 2r9u_A Variable lymphocyte rec 99.0 2.4E-09 8.3E-14 101.8 11.6 99 609-711 15-117 (174)
160 3sb4_A Hypothetical leucine ri 99.0 3.7E-09 1.3E-13 111.9 14.2 233 504-753 48-328 (329)
161 1sxj_B Activator 1 37 kDa subu 98.8 1.4E-08 4.9E-13 106.9 13.1 150 161-328 20-176 (323)
162 2ifg_A High affinity nerve gro 98.7 2.1E-08 7E-13 107.0 10.1 100 634-736 12-116 (347)
163 3un9_A NLR family member X1; l 98.7 7.5E-10 2.6E-14 119.0 -1.3 158 578-736 71-252 (372)
164 1iqp_A RFCS; clamp loader, ext 98.7 1.5E-07 5.1E-12 99.2 14.1 151 160-328 23-179 (327)
165 3sb4_A Hypothetical leucine ri 98.7 8.8E-08 3E-12 101.2 11.6 242 504-764 24-314 (329)
166 1jbk_A CLPB protein; beta barr 98.6 1E-07 3.6E-12 91.7 9.3 150 160-327 20-194 (195)
167 4fdw_A Leucine rich hypothetic 98.6 1.7E-06 5.9E-11 93.6 19.5 206 535-754 158-378 (401)
168 2ra8_A Uncharacterized protein 98.6 3.1E-08 1.1E-12 105.5 4.6 61 697-757 250-318 (362)
169 3un9_A NLR family member X1; l 98.5 2.2E-09 7.4E-14 115.3 -4.8 156 579-736 101-283 (372)
170 2ifg_A High affinity nerve gro 98.5 2.7E-07 9.3E-12 98.2 10.6 101 610-712 12-116 (347)
171 1jr3_A DNA polymerase III subu 98.5 1.6E-06 5.5E-11 93.1 15.6 158 160-328 14-188 (373)
172 1hqc_A RUVB; extended AAA-ATPa 98.5 3.3E-06 1.1E-10 88.8 17.4 143 160-328 10-178 (324)
173 3h4m_A Proteasome-activating n 98.5 3E-06 1E-10 87.3 16.7 151 158-328 13-198 (285)
174 2chq_A Replication factor C sm 98.5 1.3E-06 4.5E-11 91.5 14.0 149 161-328 16-171 (319)
175 4fdw_A Leucine rich hypothetic 98.4 3.5E-06 1.2E-10 91.2 17.3 213 535-763 136-361 (401)
176 2ra8_A Uncharacterized protein 98.3 1.2E-07 4E-12 101.0 1.8 165 571-757 164-341 (362)
177 1d2n_A N-ethylmaleimide-sensit 98.3 1.5E-05 5.3E-10 81.3 17.1 168 162-348 33-228 (272)
178 3bos_A Putative DNA replicatio 98.3 3E-06 1E-10 84.7 11.1 141 160-328 26-184 (242)
179 1l8q_A Chromosomal replication 98.3 1.6E-05 5.6E-10 83.4 17.3 149 162-328 11-176 (324)
180 3te6_A Regulatory protein SIR3 98.3 4.2E-06 1.4E-10 86.5 12.1 159 164-328 22-208 (318)
181 1sxj_A Activator 1 95 kDa subu 98.3 1.1E-05 3.8E-10 90.3 16.5 158 160-328 37-219 (516)
182 3d8b_A Fidgetin-like protein 1 98.2 2.4E-05 8.3E-10 83.2 17.9 168 136-328 63-261 (357)
183 2qz4_A Paraplegin; AAA+, SPG7, 98.2 3.4E-05 1.2E-09 78.2 18.0 149 161-328 5-187 (262)
184 3syl_A Protein CBBX; photosynt 98.2 1E-05 3.5E-10 84.3 13.8 147 163-328 32-214 (309)
185 2z4s_A Chromosomal replication 98.2 8.9E-06 3.1E-10 89.0 13.5 149 163-328 106-273 (440)
186 2p65_A Hypothetical protein PF 98.2 8.1E-06 2.8E-10 77.8 10.8 49 161-211 21-69 (187)
187 3pfi_A Holliday junction ATP-d 98.2 3.3E-05 1.1E-09 81.6 16.5 251 160-442 27-325 (338)
188 3eie_A Vacuolar protein sortin 98.1 6.2E-05 2.1E-09 78.8 18.1 151 158-328 14-194 (322)
189 1sxj_D Activator 1 41 kDa subu 98.1 1.4E-05 4.9E-10 84.9 12.5 162 160-328 35-202 (353)
190 3cf0_A Transitional endoplasmi 98.1 0.00017 5.9E-09 74.6 19.3 150 160-328 13-196 (301)
191 3b9p_A CG5977-PA, isoform A; A 98.1 0.00013 4.6E-09 75.3 18.5 151 158-328 17-199 (297)
192 3e4g_A ATP synthase subunit S, 98.1 2.3E-06 8E-11 80.0 4.4 86 675-761 61-154 (176)
193 1xwi_A SKD1 protein; VPS4B, AA 98.0 0.00019 6.4E-09 75.0 19.2 151 159-328 9-189 (322)
194 2qp9_X Vacuolar protein sortin 98.0 0.00012 4E-09 77.8 17.9 150 159-328 48-227 (355)
195 1sxj_E Activator 1 40 kDa subu 98.0 5E-05 1.7E-09 80.8 13.3 163 161-328 13-203 (354)
196 3u61_B DNA polymerase accessor 97.9 7.1E-05 2.4E-09 78.5 13.9 147 159-327 23-174 (324)
197 3n70_A Transport activator; si 97.9 1.8E-05 6.2E-10 72.3 7.7 47 163-209 2-48 (145)
198 1qvr_A CLPB protein; coiled co 97.9 5.6E-05 1.9E-09 90.1 13.8 151 160-328 168-342 (854)
199 3ec2_A DNA replication protein 97.9 1.7E-05 5.8E-10 75.4 7.5 118 167-301 19-143 (180)
200 1io0_A Tropomodulin; LRR prote 97.9 3.8E-06 1.3E-10 80.4 2.9 117 625-757 31-162 (185)
201 2zan_A Vacuolar protein sortin 97.9 0.00052 1.8E-08 75.1 20.2 152 158-328 130-311 (444)
202 3uk6_A RUVB-like 2; hexameric 97.9 0.00043 1.5E-08 73.8 19.3 52 161-212 43-97 (368)
203 3vfd_A Spastin; ATPase, microt 97.9 0.00027 9.1E-09 76.1 17.4 151 158-328 111-292 (389)
204 2w58_A DNAI, primosome compone 97.9 1.7E-05 5.9E-10 76.9 7.2 59 162-220 25-89 (202)
205 3pvs_A Replication-associated 97.9 0.00033 1.1E-08 76.5 18.0 145 159-328 23-175 (447)
206 4b4t_J 26S protease regulatory 97.8 0.00035 1.2E-08 74.0 16.5 171 162-353 148-357 (405)
207 1lv7_A FTSH; alpha/beta domain 97.8 0.00051 1.8E-08 69.2 16.5 151 159-328 9-192 (257)
208 3hu3_A Transitional endoplasmi 97.8 0.00025 8.4E-09 78.3 14.9 170 162-351 204-408 (489)
209 4b4t_K 26S protease regulatory 97.8 0.0005 1.7E-08 73.9 16.8 157 161-337 171-362 (428)
210 4b4t_H 26S protease regulatory 97.7 0.00073 2.5E-08 72.6 16.6 172 161-353 208-418 (467)
211 1a5t_A Delta prime, HOLB; zinc 97.6 0.0012 3.9E-08 69.4 16.7 140 168-328 8-177 (334)
212 3rw6_A Nuclear RNA export fact 97.6 3E-05 1E-09 78.1 3.9 80 672-753 167-258 (267)
213 3pxg_A Negative regulator of g 97.6 0.00032 1.1E-08 77.3 12.4 145 160-328 178-335 (468)
214 4fcw_A Chaperone protein CLPB; 97.6 0.00025 8.5E-09 73.8 10.9 57 163-219 18-81 (311)
215 3e4g_A ATP synthase subunit S, 97.6 2.5E-05 8.4E-10 73.0 2.5 36 607-642 62-97 (176)
216 4b4t_I 26S protease regulatory 97.5 0.0012 4.1E-08 70.2 15.5 172 161-353 181-391 (437)
217 2ce7_A Cell division protein F 97.5 0.0014 4.8E-08 71.7 16.5 148 162-328 16-196 (476)
218 4b4t_L 26S protease subunit RP 97.5 0.00098 3.3E-08 71.8 15.0 148 161-328 180-362 (437)
219 4b4t_M 26S protease regulatory 97.5 0.0011 3.9E-08 71.2 15.5 149 160-328 179-362 (434)
220 1r6b_X CLPA protein; AAA+, N-t 97.5 0.0013 4.3E-08 77.5 17.2 149 160-328 184-359 (758)
221 1io0_A Tropomodulin; LRR prote 97.5 1.6E-05 5.5E-10 76.0 0.5 118 602-736 32-164 (185)
222 2gno_A DNA polymerase III, gam 97.5 0.00067 2.3E-08 70.0 12.5 143 166-328 1-149 (305)
223 1ofh_A ATP-dependent HSL prote 97.5 0.00047 1.6E-08 71.5 11.5 48 163-210 16-75 (310)
224 1sxj_C Activator 1 40 kDa subu 97.5 0.00044 1.5E-08 73.0 11.1 150 162-328 25-179 (340)
225 3co5_A Putative two-component 97.4 4.7E-05 1.6E-09 69.3 2.7 48 162-209 4-51 (143)
226 2kjq_A DNAA-related protein; s 97.4 0.00043 1.5E-08 63.3 8.5 36 185-220 36-71 (149)
227 3pxi_A Negative regulator of g 97.4 0.0011 3.8E-08 77.8 14.1 145 160-328 178-335 (758)
228 2bjv_A PSP operon transcriptio 97.4 0.0003 1E-08 71.3 7.8 49 162-210 6-54 (265)
229 1ixz_A ATP-dependent metallopr 97.4 0.0036 1.2E-07 62.7 15.8 157 160-337 14-204 (254)
230 2r62_A Cell division protease 97.3 0.0002 6.7E-09 72.8 6.2 54 159-212 8-71 (268)
231 3pxi_A Negative regulator of g 97.2 0.00066 2.3E-08 79.8 10.0 146 162-327 491-671 (758)
232 1iy2_A ATP-dependent metallopr 97.2 0.0045 1.5E-07 63.0 14.7 158 159-337 37-228 (278)
233 4gt6_A Cell surface protein; l 97.2 0.032 1.1E-06 59.8 22.1 81 671-756 284-367 (394)
234 1ojl_A Transcriptional regulat 97.2 0.0007 2.4E-08 70.0 8.4 48 162-209 2-49 (304)
235 2dhr_A FTSH; AAA+ protein, hex 97.2 0.011 3.6E-07 65.1 18.2 176 160-359 29-245 (499)
236 4h09_A Hypothetical leucine ri 97.2 0.053 1.8E-06 57.6 23.5 120 628-754 215-341 (379)
237 4fs7_A Uncharacterized protein 97.2 0.0062 2.1E-07 65.4 15.9 17 498-514 155-171 (394)
238 2qgz_A Helicase loader, putati 97.1 0.00057 1.9E-08 70.8 7.0 52 169-220 135-188 (308)
239 4fs7_A Uncharacterized protein 97.1 0.015 5E-07 62.5 17.8 80 671-755 293-375 (394)
240 3cf2_A TER ATPase, transitiona 97.0 0.0048 1.6E-07 71.5 13.9 155 162-337 204-390 (806)
241 2x8a_A Nuclear valosin-contain 97.0 0.012 4.1E-07 59.6 15.1 147 162-328 10-188 (274)
242 3t15_A Ribulose bisphosphate c 96.9 0.0039 1.3E-07 64.0 11.1 28 184-211 35-62 (293)
243 3m6a_A ATP-dependent protease 96.8 0.017 5.7E-07 64.7 15.7 50 163-212 82-135 (543)
244 3rw6_A Nuclear RNA export fact 96.8 0.00099 3.4E-08 67.0 5.1 67 696-763 167-237 (267)
245 1ypw_A Transitional endoplasmi 96.7 0.0039 1.3E-07 73.3 9.9 149 161-328 203-382 (806)
246 2c9o_A RUVB-like 1; hexameric 96.6 0.0044 1.5E-07 68.0 9.1 52 161-212 36-90 (456)
247 4gt6_A Cell surface protein; l 96.5 0.083 2.8E-06 56.5 18.5 121 626-755 261-387 (394)
248 1r6b_X CLPA protein; AAA+, N-t 96.5 0.015 5.2E-07 68.3 13.4 48 162-209 458-512 (758)
249 3dm5_A SRP54, signal recogniti 96.5 0.064 2.2E-06 57.6 16.9 36 184-219 99-134 (443)
250 2cvh_A DNA repair and recombin 96.5 0.0094 3.2E-07 58.0 9.6 33 185-220 20-52 (220)
251 3lw7_A Adenylate kinase relate 96.3 0.013 4.4E-07 54.5 9.3 22 186-208 2-23 (179)
252 1g5t_A COB(I)alamin adenosyltr 96.3 0.013 4.3E-07 55.5 8.9 115 185-301 28-163 (196)
253 2vhj_A Ntpase P4, P4; non- hyd 96.2 0.0033 1.1E-07 64.3 4.5 24 185-208 123-146 (331)
254 1in4_A RUVB, holliday junction 95.9 0.0039 1.3E-07 65.4 3.8 50 162-211 25-77 (334)
255 3jvv_A Twitching mobility prot 95.9 0.0058 2E-07 64.3 5.1 110 186-304 124-234 (356)
256 1zu4_A FTSY; GTPase, signal re 95.9 0.019 6.5E-07 59.4 8.7 36 184-219 104-139 (320)
257 1qvr_A CLPB protein; coiled co 95.9 0.015 5E-07 69.2 8.9 49 163-211 559-614 (854)
258 2r44_A Uncharacterized protein 95.9 0.0053 1.8E-07 64.2 4.5 45 163-211 28-72 (331)
259 1rz3_A Hypothetical protein rb 95.7 0.018 6E-07 55.3 7.2 44 167-210 3-47 (201)
260 3hws_A ATP-dependent CLP prote 95.7 0.0083 2.8E-07 63.7 5.1 47 164-210 17-76 (363)
261 3c8u_A Fructokinase; YP_612366 95.6 0.012 4.2E-07 56.8 5.7 41 170-210 7-47 (208)
262 1qhx_A CPT, protein (chloramph 95.6 0.0055 1.9E-07 57.5 2.9 25 186-210 4-28 (178)
263 3ice_A Transcription terminati 95.5 0.006 2E-07 63.7 3.2 26 186-211 175-200 (422)
264 3e70_C DPA, signal recognition 95.5 0.084 2.9E-06 54.7 11.9 29 184-212 128-156 (328)
265 2orw_A Thymidine kinase; TMTK, 95.5 0.0037 1.3E-07 59.2 1.5 25 186-210 4-28 (184)
266 1j8m_F SRP54, signal recogniti 95.5 0.029 1E-06 57.4 8.3 36 185-220 98-133 (297)
267 1pgv_A TMD-1, tropomodulin TMD 95.5 0.0088 3E-07 56.8 4.0 81 628-708 39-135 (197)
268 2eyu_A Twitching motility prot 95.5 0.038 1.3E-06 55.3 9.0 112 185-304 25-136 (261)
269 3kb2_A SPBC2 prophage-derived 95.4 0.0071 2.4E-07 56.3 3.2 25 186-210 2-26 (173)
270 1odf_A YGR205W, hypothetical 3 95.4 0.018 6.3E-07 58.6 6.2 31 181-211 27-57 (290)
271 2b8t_A Thymidine kinase; deoxy 95.3 0.014 5E-07 56.7 5.0 107 185-302 12-127 (223)
272 3vaa_A Shikimate kinase, SK; s 95.2 0.0092 3.1E-07 57.2 3.3 25 185-209 25-49 (199)
273 1sky_E F1-ATPase, F1-ATP synth 95.2 0.037 1.3E-06 59.7 8.1 33 187-219 153-186 (473)
274 3trf_A Shikimate kinase, SK; a 95.2 0.0095 3.2E-07 56.3 3.2 24 186-209 6-29 (185)
275 2ga8_A Hypothetical 39.9 kDa p 95.1 0.015 5.3E-07 60.3 4.6 49 165-213 2-52 (359)
276 3sr0_A Adenylate kinase; phosp 95.0 0.044 1.5E-06 52.7 7.3 88 187-283 2-95 (206)
277 1nks_A Adenylate kinase; therm 94.9 0.025 8.6E-07 53.5 5.4 26 186-211 2-27 (194)
278 4h09_A Hypothetical leucine ri 94.9 1.1 3.7E-05 47.3 18.9 100 626-731 236-341 (379)
279 2xxa_A Signal recognition part 94.9 0.059 2E-06 58.1 8.7 29 184-212 99-127 (433)
280 1um8_A ATP-dependent CLP prote 94.9 0.018 6.1E-07 61.4 4.6 26 185-210 72-97 (376)
281 3hr8_A Protein RECA; alpha and 94.9 0.03 1E-06 58.6 6.2 49 172-220 47-96 (356)
282 1ly1_A Polynucleotide kinase; 94.9 0.015 5.1E-07 54.5 3.5 23 186-208 3-25 (181)
283 3uie_A Adenylyl-sulfate kinase 94.8 0.024 8.4E-07 54.3 5.0 27 184-210 24-50 (200)
284 3nbx_X ATPase RAVA; AAA+ ATPas 94.8 0.016 5.3E-07 63.9 3.9 44 163-210 23-66 (500)
285 3tlx_A Adenylate kinase 2; str 94.8 0.023 7.8E-07 56.4 4.8 41 169-209 13-53 (243)
286 1zp6_A Hypothetical protein AT 94.7 0.016 5.6E-07 54.9 3.5 24 185-208 9-32 (191)
287 1zuh_A Shikimate kinase; alpha 94.7 0.016 5.3E-07 53.8 3.3 26 185-210 7-32 (168)
288 2yvu_A Probable adenylyl-sulfa 94.7 0.029 9.8E-07 53.0 5.1 27 185-211 13-39 (186)
289 2rhm_A Putative kinase; P-loop 94.7 0.024 8.2E-07 53.8 4.4 25 185-209 5-29 (193)
290 1kag_A SKI, shikimate kinase I 94.6 0.015 5.1E-07 54.1 2.9 25 186-210 5-29 (173)
291 1xjc_A MOBB protein homolog; s 94.6 0.028 9.6E-07 52.0 4.6 35 184-218 3-38 (169)
292 3iij_A Coilin-interacting nucl 94.6 0.013 4.3E-07 55.2 2.3 25 185-209 11-35 (180)
293 1ex7_A Guanylate kinase; subst 94.6 0.011 3.7E-07 55.9 1.7 29 186-214 2-30 (186)
294 2jaq_A Deoxyguanosine kinase; 94.5 0.017 5.9E-07 55.3 3.1 24 187-210 2-25 (205)
295 2ck3_D ATP synthase subunit be 94.5 0.074 2.5E-06 57.2 8.2 51 187-241 155-206 (482)
296 1kht_A Adenylate kinase; phosp 94.5 0.021 7.3E-07 54.0 3.7 26 186-211 4-29 (192)
297 2ewv_A Twitching motility prot 94.5 0.12 4.2E-06 54.6 9.9 110 185-303 136-246 (372)
298 3kl4_A SRP54, signal recogniti 94.5 0.089 3E-06 56.5 8.8 36 184-219 96-131 (433)
299 2ze6_A Isopentenyl transferase 94.5 0.021 7.1E-07 57.1 3.6 25 186-210 2-26 (253)
300 1kgd_A CASK, peripheral plasma 94.5 0.02 6.8E-07 53.9 3.3 25 186-210 6-30 (180)
301 1knq_A Gluconate kinase; ALFA/ 94.5 0.028 9.5E-07 52.4 4.3 25 185-209 8-32 (175)
302 1g8p_A Magnesium-chelatase 38 94.4 0.021 7.3E-07 60.0 3.9 49 160-210 22-70 (350)
303 3t61_A Gluconokinase; PSI-biol 94.4 0.018 6E-07 55.3 2.9 25 185-209 18-42 (202)
304 4eun_A Thermoresistant glucoki 94.4 0.03 1E-06 53.6 4.6 25 185-209 29-53 (200)
305 1via_A Shikimate kinase; struc 94.4 0.019 6.5E-07 53.7 3.0 24 187-210 6-29 (175)
306 3io5_A Recombination and repai 94.3 0.075 2.6E-06 54.1 7.3 34 187-220 30-65 (333)
307 1ukz_A Uridylate kinase; trans 94.3 0.029 1E-06 53.7 4.2 27 183-209 13-39 (203)
308 1fx0_B ATP synthase beta chain 94.3 0.093 3.2E-06 56.7 8.3 84 187-274 167-277 (498)
309 1g41_A Heat shock protein HSLU 94.2 0.038 1.3E-06 59.5 5.3 49 163-211 16-76 (444)
310 1tev_A UMP-CMP kinase; ploop, 94.2 0.028 9.6E-07 53.3 3.9 25 185-209 3-27 (196)
311 2c95_A Adenylate kinase 1; tra 94.2 0.024 8.1E-07 54.0 3.3 25 185-209 9-33 (196)
312 1uf9_A TT1252 protein; P-loop, 94.2 0.03 1E-06 53.6 4.0 26 183-208 6-31 (203)
313 2plr_A DTMP kinase, probable t 94.2 0.045 1.6E-06 52.6 5.4 28 186-213 5-32 (213)
314 1y63_A LMAJ004144AAA protein; 94.2 0.026 9E-07 53.2 3.5 24 185-208 10-33 (184)
315 2pt5_A Shikimate kinase, SK; a 94.1 0.028 9.5E-07 52.0 3.5 24 187-210 2-25 (168)
316 1v5w_A DMC1, meiotic recombina 94.1 0.16 5.4E-06 53.2 9.6 47 174-220 111-163 (343)
317 2iyv_A Shikimate kinase, SK; t 94.1 0.026 8.8E-07 53.2 3.3 24 187-210 4-27 (184)
318 3l0o_A Transcription terminati 94.1 0.013 4.5E-07 61.0 1.3 26 186-211 176-201 (427)
319 2pt7_A CAG-ALFA; ATPase, prote 94.1 0.07 2.4E-06 55.5 6.9 104 187-303 173-277 (330)
320 3p32_A Probable GTPase RV1496/ 94.1 0.083 2.8E-06 55.6 7.5 42 171-212 65-106 (355)
321 2vli_A Antibiotic resistance p 94.1 0.019 6.6E-07 53.9 2.3 26 185-210 5-30 (183)
322 3cm0_A Adenylate kinase; ATP-b 94.1 0.028 9.7E-07 52.9 3.5 24 186-209 5-28 (186)
323 2bwj_A Adenylate kinase 5; pho 94.1 0.032 1.1E-06 53.2 3.8 25 186-210 13-37 (199)
324 1e6c_A Shikimate kinase; phosp 94.0 0.02 7E-07 53.2 2.4 24 187-210 4-27 (173)
325 1pgv_A TMD-1, tropomodulin TMD 94.0 0.03 1E-06 53.1 3.5 106 652-757 41-168 (197)
326 3a00_A Guanylate kinase, GMP k 94.0 0.02 6.7E-07 54.2 2.3 29 186-214 2-30 (186)
327 2bdt_A BH3686; alpha-beta prot 94.0 0.029 1E-06 53.1 3.5 31 186-220 3-33 (189)
328 3tqc_A Pantothenate kinase; bi 94.0 0.045 1.5E-06 56.4 5.1 48 164-211 69-118 (321)
329 2if2_A Dephospho-COA kinase; a 94.0 0.028 9.7E-07 53.9 3.5 21 187-207 3-23 (204)
330 2qor_A Guanylate kinase; phosp 94.0 0.022 7.7E-07 54.7 2.7 26 185-210 12-37 (204)
331 1tue_A Replication protein E1; 93.9 0.044 1.5E-06 52.0 4.4 44 167-211 41-84 (212)
332 1qf9_A UMP/CMP kinase, protein 93.9 0.035 1.2E-06 52.5 3.9 26 185-210 6-31 (194)
333 3a4m_A L-seryl-tRNA(SEC) kinas 93.9 0.034 1.2E-06 55.8 3.9 26 185-210 4-29 (260)
334 1nn5_A Similar to deoxythymidy 93.9 0.046 1.6E-06 52.8 4.7 28 185-212 9-36 (215)
335 2cdn_A Adenylate kinase; phosp 93.9 0.032 1.1E-06 53.4 3.5 26 185-210 20-45 (201)
336 1cke_A CK, MSSA, protein (cyti 93.9 0.032 1.1E-06 54.5 3.6 25 186-210 6-30 (227)
337 3cf2_A TER ATPase, transitiona 93.9 0.15 5.2E-06 59.1 9.6 157 160-337 475-666 (806)
338 3fwy_A Light-independent proto 93.8 0.052 1.8E-06 55.9 5.2 37 184-220 47-83 (314)
339 2grj_A Dephospho-COA kinase; T 93.8 0.038 1.3E-06 52.5 3.7 26 184-209 11-36 (192)
340 1uj2_A Uridine-cytidine kinase 93.8 0.037 1.3E-06 55.2 3.9 28 183-210 20-47 (252)
341 3tr0_A Guanylate kinase, GMP k 93.8 0.033 1.1E-06 53.4 3.3 24 186-209 8-31 (205)
342 2pbr_A DTMP kinase, thymidylat 93.8 0.036 1.2E-06 52.5 3.6 24 187-210 2-25 (195)
343 1aky_A Adenylate kinase; ATP:A 93.7 0.031 1E-06 54.4 3.1 25 186-210 5-29 (220)
344 3tau_A Guanylate kinase, GMP k 93.7 0.032 1.1E-06 53.9 3.1 27 185-211 8-34 (208)
345 2qt1_A Nicotinamide riboside k 93.7 0.044 1.5E-06 52.7 4.1 25 184-208 20-44 (207)
346 3bh0_A DNAB-like replicative h 93.7 0.15 5E-06 52.7 8.3 36 185-220 68-103 (315)
347 1vma_A Cell division protein F 93.7 0.1 3.6E-06 53.4 7.1 52 168-219 81-138 (306)
348 2wwf_A Thymidilate kinase, put 93.6 0.039 1.3E-06 53.1 3.7 31 185-215 10-41 (212)
349 2j41_A Guanylate kinase; GMP, 93.6 0.035 1.2E-06 53.2 3.3 24 186-209 7-30 (207)
350 3asz_A Uridine kinase; cytidin 93.6 0.048 1.7E-06 52.5 4.3 27 184-210 5-31 (211)
351 2wsm_A Hydrogenase expression/ 93.6 0.058 2E-06 52.3 4.9 45 166-212 13-57 (221)
352 2hf9_A Probable hydrogenase ni 93.6 0.076 2.6E-06 51.7 5.8 41 170-212 25-65 (226)
353 4gp7_A Metallophosphoesterase; 93.6 0.03 1E-06 52.1 2.7 21 186-206 10-30 (171)
354 1ye8_A Protein THEP1, hypothet 93.6 0.044 1.5E-06 51.3 3.8 24 187-210 2-25 (178)
355 1jjv_A Dephospho-COA kinase; P 93.5 0.038 1.3E-06 53.1 3.4 22 186-207 3-24 (206)
356 2bbw_A Adenylate kinase 4, AK4 93.5 0.04 1.4E-06 54.7 3.6 26 185-210 27-52 (246)
357 1jr3_D DNA polymerase III, del 93.5 1.2 4.1E-05 46.2 15.2 124 184-328 17-152 (343)
358 3umf_A Adenylate kinase; rossm 93.5 0.057 2E-06 52.3 4.4 27 183-209 27-53 (217)
359 1puj_A YLQF, conserved hypothe 93.4 0.43 1.5E-05 48.2 11.1 36 29-65 13-48 (282)
360 1gtv_A TMK, thymidylate kinase 93.4 0.031 1E-06 54.0 2.4 25 187-211 2-26 (214)
361 3ney_A 55 kDa erythrocyte memb 93.3 0.044 1.5E-06 52.1 3.3 27 184-210 18-44 (197)
362 4a74_A DNA repair and recombin 93.3 0.099 3.4E-06 50.9 6.1 36 185-220 25-66 (231)
363 3nwj_A ATSK2; P loop, shikimat 93.3 0.032 1.1E-06 55.4 2.5 24 187-210 50-73 (250)
364 1zd8_A GTP:AMP phosphotransfer 93.3 0.048 1.6E-06 53.4 3.6 25 185-209 7-31 (227)
365 2p5t_B PEZT; postsegregational 93.2 0.065 2.2E-06 53.4 4.6 27 184-210 31-57 (253)
366 3fb4_A Adenylate kinase; psych 93.2 0.049 1.7E-06 52.7 3.6 23 187-209 2-24 (216)
367 1gvn_B Zeta; postsegregational 93.2 0.053 1.8E-06 55.2 4.0 26 184-209 32-57 (287)
368 1rj9_A FTSY, signal recognitio 93.2 0.077 2.6E-06 54.4 5.2 36 184-220 101-136 (304)
369 1lvg_A Guanylate kinase, GMP k 93.1 0.037 1.3E-06 52.9 2.5 25 186-210 5-29 (198)
370 4e22_A Cytidylate kinase; P-lo 93.1 0.043 1.5E-06 54.7 3.0 26 185-210 27-52 (252)
371 2z0h_A DTMP kinase, thymidylat 93.1 0.052 1.8E-06 51.6 3.5 25 187-211 2-26 (197)
372 3dl0_A Adenylate kinase; phosp 93.0 0.052 1.8E-06 52.5 3.5 23 187-209 2-24 (216)
373 2f6r_A COA synthase, bifunctio 93.0 0.059 2E-06 54.7 3.9 24 184-207 74-97 (281)
374 2dr3_A UPF0273 protein PH0284; 93.0 0.083 2.8E-06 52.1 5.0 35 186-220 24-58 (247)
375 1m7g_A Adenylylsulfate kinase; 93.0 0.061 2.1E-06 51.9 3.8 26 185-210 25-50 (211)
376 3b9q_A Chloroplast SRP recepto 93.0 0.14 4.7E-06 52.4 6.6 35 185-220 100-134 (302)
377 1zak_A Adenylate kinase; ATP:A 93.0 0.047 1.6E-06 53.2 3.0 26 185-210 5-30 (222)
378 1n0w_A DNA repair protein RAD5 92.9 0.094 3.2E-06 51.6 5.3 36 185-220 24-65 (243)
379 2pez_A Bifunctional 3'-phospho 92.9 0.065 2.2E-06 50.1 3.9 26 185-210 5-30 (179)
380 3rfe_A Platelet glycoprotein I 92.9 0.17 5.7E-06 44.6 6.2 42 645-686 24-66 (130)
381 2w0m_A SSO2452; RECA, SSPF, un 92.9 0.082 2.8E-06 51.6 4.7 35 186-220 24-58 (235)
382 3ake_A Cytidylate kinase; CMP 92.8 0.059 2E-06 51.6 3.5 24 187-210 4-27 (208)
383 3aez_A Pantothenate kinase; tr 92.7 0.063 2.1E-06 55.3 3.7 29 183-211 88-116 (312)
384 3d3q_A TRNA delta(2)-isopenten 92.7 0.064 2.2E-06 55.5 3.7 25 186-210 8-32 (340)
385 3be4_A Adenylate kinase; malar 92.6 0.07 2.4E-06 51.7 3.8 24 186-209 6-29 (217)
386 2jeo_A Uridine-cytidine kinase 92.6 0.06 2E-06 53.4 3.3 26 184-209 24-49 (245)
387 1znw_A Guanylate kinase, GMP k 92.6 0.058 2E-06 51.9 3.1 24 186-209 21-44 (207)
388 3zvl_A Bifunctional polynucleo 92.6 0.3 1E-05 52.5 9.0 26 184-209 257-282 (416)
389 3k1j_A LON protease, ATP-depen 92.6 0.12 4.1E-06 58.6 6.2 48 162-213 41-88 (604)
390 1vht_A Dephospho-COA kinase; s 92.6 0.075 2.6E-06 51.5 3.9 23 185-207 4-26 (218)
391 3r20_A Cytidylate kinase; stru 92.5 0.063 2.1E-06 52.5 3.2 26 185-210 9-34 (233)
392 1e4v_A Adenylate kinase; trans 92.5 0.075 2.5E-06 51.4 3.8 23 187-209 2-24 (214)
393 2v54_A DTMP kinase, thymidylat 92.5 0.065 2.2E-06 51.2 3.3 24 186-209 5-28 (204)
394 1htw_A HI0065; nucleotide-bind 92.5 0.071 2.4E-06 48.8 3.4 25 185-209 33-57 (158)
395 2ehv_A Hypothetical protein PH 92.5 0.09 3.1E-06 52.0 4.4 35 186-220 31-66 (251)
396 2px0_A Flagellar biosynthesis 92.4 0.11 3.9E-06 52.9 5.1 28 184-211 104-131 (296)
397 1np6_A Molybdopterin-guanine d 92.4 0.11 3.9E-06 48.3 4.6 27 185-211 6-32 (174)
398 2q6t_A DNAB replication FORK h 92.4 0.41 1.4E-05 51.9 9.9 52 185-243 200-252 (444)
399 2zr9_A Protein RECA, recombina 92.4 0.11 3.9E-06 54.3 5.2 48 173-220 48-96 (349)
400 2xb4_A Adenylate kinase; ATP-b 92.4 0.077 2.6E-06 51.7 3.6 23 187-209 2-24 (223)
401 2og2_A Putative signal recogni 92.3 0.18 6.3E-06 52.7 6.7 34 185-219 157-190 (359)
402 3vr4_D V-type sodium ATPase su 92.3 0.13 4.4E-06 55.0 5.5 84 187-274 153-259 (465)
403 1yrb_A ATP(GTP)binding protein 92.3 0.14 4.7E-06 51.1 5.6 27 184-210 13-39 (262)
404 3crm_A TRNA delta(2)-isopenten 92.3 0.079 2.7E-06 54.4 3.7 24 186-209 6-29 (323)
405 1z6g_A Guanylate kinase; struc 92.3 0.06 2.1E-06 52.3 2.7 24 186-209 24-47 (218)
406 1cp2_A CP2, nitrogenase iron p 92.3 0.14 4.9E-06 51.3 5.7 35 186-220 2-36 (269)
407 1u94_A RECA protein, recombina 92.3 0.12 4E-06 54.3 5.0 49 172-220 49-98 (356)
408 1ak2_A Adenylate kinase isoenz 92.2 0.07 2.4E-06 52.4 3.2 26 185-210 16-41 (233)
409 3e1s_A Exodeoxyribonuclease V, 92.2 0.4 1.4E-05 53.7 9.7 39 169-212 193-231 (574)
410 2f1r_A Molybdopterin-guanine d 92.2 0.05 1.7E-06 50.6 1.9 26 186-211 3-28 (171)
411 4a1f_A DNAB helicase, replicat 92.2 0.16 5.4E-06 52.7 5.9 51 186-243 47-97 (338)
412 1cr0_A DNA primase/helicase; R 92.1 0.12 4.1E-06 52.8 4.9 35 186-220 36-71 (296)
413 2i3b_A HCR-ntpase, human cance 92.1 0.073 2.5E-06 50.3 3.0 24 187-210 3-26 (189)
414 1a7j_A Phosphoribulokinase; tr 92.1 0.054 1.8E-06 55.2 2.2 27 184-210 4-30 (290)
415 3end_A Light-independent proto 92.0 0.13 4.6E-06 52.7 5.2 37 184-220 40-76 (307)
416 1s96_A Guanylate kinase, GMP k 92.0 0.073 2.5E-06 51.7 2.9 25 186-210 17-41 (219)
417 2yhs_A FTSY, cell division pro 91.9 0.19 6.6E-06 54.5 6.4 35 185-220 293-327 (503)
418 1sq5_A Pantothenate kinase; P- 91.9 0.19 6.5E-06 51.6 6.1 28 183-210 78-105 (308)
419 2fz4_A DNA repair protein RAD2 91.8 1.4 4.8E-05 43.0 12.1 41 164-209 92-132 (237)
420 2v3c_C SRP54, signal recogniti 91.8 0.098 3.3E-06 56.4 3.9 28 185-212 99-126 (432)
421 1ls1_A Signal recognition part 91.7 0.15 5E-06 52.1 5.0 29 184-212 97-125 (295)
422 2j37_W Signal recognition part 91.7 0.24 8.2E-06 54.3 7.0 29 184-212 100-128 (504)
423 1nlf_A Regulatory protein REPA 91.7 0.17 5.8E-06 51.1 5.5 26 186-211 31-56 (279)
424 2ck3_A ATP synthase subunit al 91.7 0.18 6.3E-06 54.6 5.8 85 187-274 164-273 (510)
425 1u0j_A DNA replication protein 91.7 0.16 5.3E-06 50.6 4.9 39 171-209 90-128 (267)
426 1ltq_A Polynucleotide kinase; 91.6 0.1 3.5E-06 53.4 3.7 23 186-208 3-25 (301)
427 2r8r_A Sensor protein; KDPD, P 91.6 0.15 5.1E-06 49.3 4.5 29 187-215 8-37 (228)
428 3foz_A TRNA delta(2)-isopenten 91.5 0.13 4.4E-06 52.3 4.2 26 184-209 9-34 (316)
429 2r6a_A DNAB helicase, replicat 91.5 0.46 1.6E-05 51.7 9.0 35 186-220 204-239 (454)
430 3exa_A TRNA delta(2)-isopenten 91.4 0.097 3.3E-06 53.3 3.2 25 185-209 3-27 (322)
431 1svm_A Large T antigen; AAA+ f 91.4 0.15 5E-06 53.9 4.7 27 183-209 167-193 (377)
432 3hjn_A DTMP kinase, thymidylat 91.4 0.63 2.2E-05 44.1 8.8 33 187-219 2-34 (197)
433 2p67_A LAO/AO transport system 91.4 0.31 1.1E-05 50.8 7.2 30 182-211 53-82 (341)
434 2qe7_A ATP synthase subunit al 91.4 0.23 7.8E-06 53.7 6.2 83 187-274 164-265 (502)
435 3a8t_A Adenylate isopentenyltr 91.4 0.083 2.9E-06 54.4 2.7 25 185-209 40-64 (339)
436 1q3t_A Cytidylate kinase; nucl 91.4 0.12 4.1E-06 50.8 3.8 26 184-209 15-40 (236)
437 3lnc_A Guanylate kinase, GMP k 91.3 0.068 2.3E-06 52.4 1.9 24 186-209 28-52 (231)
438 2afh_E Nitrogenase iron protei 91.3 0.18 6.2E-06 51.2 5.2 36 185-220 2-37 (289)
439 3b85_A Phosphate starvation-in 91.2 0.093 3.2E-06 50.5 2.7 22 187-208 24-45 (208)
440 2r9v_A ATP synthase subunit al 91.2 0.23 7.7E-06 53.8 5.9 83 187-274 177-278 (515)
441 1oix_A RAS-related protein RAB 91.2 0.12 4.1E-06 48.8 3.5 24 185-208 29-52 (191)
442 1g8f_A Sulfate adenylyltransfe 91.1 0.2 6.9E-06 54.9 5.5 49 163-211 373-421 (511)
443 2rcn_A Probable GTPase ENGC; Y 91.0 0.71 2.4E-05 48.1 9.4 22 187-208 217-238 (358)
444 2pcj_A ABC transporter, lipopr 91.0 0.1 3.4E-06 50.9 2.8 21 187-207 32-52 (224)
445 2onk_A Molybdate/tungstate ABC 91.0 0.11 3.9E-06 51.1 3.1 23 186-208 25-47 (240)
446 2z43_A DNA repair and recombin 91.0 0.21 7.3E-06 51.7 5.4 36 185-220 107-148 (324)
447 2dyk_A GTP-binding protein; GT 90.9 0.14 4.7E-06 46.4 3.5 23 186-208 2-24 (161)
448 3rfe_A Platelet glycoprotein I 90.9 0.32 1.1E-05 42.7 5.7 53 656-711 12-67 (130)
449 3bgw_A DNAB-like replicative h 90.8 0.27 9.3E-06 53.2 6.3 36 185-220 197-232 (444)
450 1pzn_A RAD51, DNA repair and r 90.8 0.23 7.8E-06 52.0 5.4 47 174-220 120-172 (349)
451 3tif_A Uncharacterized ABC tra 90.8 0.1 3.5E-06 51.3 2.6 22 186-207 32-53 (235)
452 2ocp_A DGK, deoxyguanosine kin 90.7 0.16 5.5E-06 50.0 4.0 26 185-210 2-27 (241)
453 4eaq_A DTMP kinase, thymidylat 90.7 0.16 5.5E-06 49.7 3.9 27 185-211 26-52 (229)
454 3gqb_B V-type ATP synthase bet 90.6 0.22 7.7E-06 53.2 5.2 24 187-210 149-172 (464)
455 1xp8_A RECA protein, recombina 90.6 0.23 7.8E-06 52.2 5.2 49 172-220 60-109 (366)
456 1ypw_A Transitional endoplasmi 90.6 0.13 4.4E-06 60.4 3.6 53 160-212 475-538 (806)
457 2c61_A A-type ATP synthase non 90.5 0.25 8.6E-06 53.1 5.5 82 187-272 154-258 (469)
458 2wji_A Ferrous iron transport 90.5 0.15 5.1E-06 46.7 3.4 22 186-207 4-25 (165)
459 3eph_A TRNA isopentenyltransfe 90.5 0.17 5.7E-06 53.5 4.0 25 186-210 3-27 (409)
460 2cbz_A Multidrug resistance-as 90.4 0.12 4E-06 51.0 2.6 23 186-208 32-54 (237)
461 2qmh_A HPR kinase/phosphorylas 90.4 0.12 4E-06 48.9 2.4 23 186-208 35-57 (205)
462 2f9l_A RAB11B, member RAS onco 90.4 0.13 4.6E-06 48.8 3.0 24 185-208 5-28 (199)
463 2d2e_A SUFC protein; ABC-ATPas 90.3 0.14 4.8E-06 50.8 3.1 21 187-207 31-51 (250)
464 1b0u_A Histidine permease; ABC 90.2 0.12 4.2E-06 51.7 2.6 23 186-208 33-55 (262)
465 3gfo_A Cobalt import ATP-bindi 90.2 0.12 4.2E-06 52.0 2.6 21 187-207 36-56 (275)
466 4dzz_A Plasmid partitioning pr 90.2 0.23 8E-06 47.3 4.6 35 186-220 2-37 (206)
467 3cnl_A YLQF, putative uncharac 90.2 0.36 1.2E-05 48.2 6.0 29 29-57 11-39 (262)
468 2ce2_X GTPase HRAS; signaling 90.1 0.16 5.5E-06 46.0 3.2 22 187-208 5-26 (166)
469 3fkq_A NTRC-like two-domain pr 90.1 0.41 1.4E-05 50.6 6.8 38 183-220 141-179 (373)
470 3ea0_A ATPase, para family; al 90.1 0.34 1.2E-05 47.6 5.8 37 184-220 3-41 (245)
471 2zu0_C Probable ATP-dependent 90.1 0.15 5.1E-06 51.2 3.1 23 186-208 47-69 (267)
472 1z2a_A RAS-related protein RAB 90.1 0.2 6.8E-06 45.6 3.8 24 185-208 5-28 (168)
473 2axn_A 6-phosphofructo-2-kinas 90.1 0.26 8.9E-06 54.6 5.4 30 184-213 34-63 (520)
474 2zej_A Dardarin, leucine-rich 90.1 0.13 4.6E-06 48.0 2.7 21 187-207 4-24 (184)
475 3fdi_A Uncharacterized protein 90.0 0.18 6E-06 48.2 3.5 25 186-210 7-31 (201)
476 2qm8_A GTPase/ATPase; G protei 90.0 0.4 1.4E-05 49.8 6.5 29 183-211 53-81 (337)
477 1ji0_A ABC transporter; ATP bi 90.0 0.13 4.5E-06 50.7 2.6 21 187-207 34-54 (240)
478 2ffh_A Protein (FFH); SRP54, s 90.0 0.3 1E-05 52.3 5.5 29 184-212 97-125 (425)
479 4g1u_C Hemin import ATP-bindin 89.9 0.13 4.5E-06 51.5 2.6 23 186-208 38-60 (266)
480 1fzq_A ADP-ribosylation factor 89.9 0.26 8.8E-06 45.9 4.5 26 183-208 14-39 (181)
481 3cr8_A Sulfate adenylyltranfer 89.9 0.3 1E-05 54.3 5.7 28 185-212 369-396 (552)
482 2olj_A Amino acid ABC transpor 89.9 0.13 4.6E-06 51.3 2.6 23 186-208 51-73 (263)
483 1g6h_A High-affinity branched- 89.9 0.13 4.6E-06 51.2 2.6 23 186-208 34-56 (257)
484 1fx0_A ATP synthase alpha chai 89.9 0.21 7.1E-06 54.2 4.2 84 187-275 165-267 (507)
485 1sgw_A Putative ABC transporte 89.9 0.12 4E-06 50.0 2.0 22 187-208 37-58 (214)
486 1q57_A DNA primase/helicase; d 89.9 2.4 8.3E-05 46.6 13.1 52 185-243 242-294 (503)
487 3oaa_A ATP synthase subunit al 89.8 0.4 1.4E-05 51.7 6.3 82 187-274 164-265 (513)
488 2pze_A Cystic fibrosis transme 89.8 0.14 4.8E-06 50.1 2.6 22 187-208 36-57 (229)
489 1mv5_A LMRA, multidrug resista 89.8 0.15 5.1E-06 50.4 2.8 22 186-207 29-50 (243)
490 2ff7_A Alpha-hemolysin translo 89.7 0.14 4.8E-06 50.7 2.6 23 186-208 36-58 (247)
491 2v9p_A Replication protein E1; 89.7 0.17 5.9E-06 51.6 3.3 24 186-209 127-150 (305)
492 2ged_A SR-beta, signal recogni 89.7 0.2 6.8E-06 47.1 3.6 25 184-208 47-71 (193)
493 1vpl_A ABC transporter, ATP-bi 89.6 0.15 5E-06 50.9 2.6 22 186-207 42-63 (256)
494 3con_A GTPase NRAS; structural 89.6 0.17 6E-06 47.4 3.1 23 186-208 22-44 (190)
495 2ghi_A Transport protein; mult 89.5 0.15 5.1E-06 51.0 2.6 23 186-208 47-69 (260)
496 2wjg_A FEOB, ferrous iron tran 89.5 0.22 7.4E-06 46.6 3.7 24 185-208 7-30 (188)
497 4hlc_A DTMP kinase, thymidylat 89.4 0.34 1.2E-05 46.4 5.0 30 186-215 3-32 (205)
498 3kjh_A CO dehydrogenase/acetyl 89.4 0.26 9E-06 48.5 4.4 33 188-220 3-35 (254)
499 3gmt_A Adenylate kinase; ssgci 89.4 0.2 6.9E-06 48.6 3.4 24 186-209 9-32 (230)
500 1tq4_A IIGP1, interferon-induc 89.4 0.17 5.9E-06 54.0 3.2 34 174-207 58-91 (413)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=7.4e-42 Score=389.58 Aligned_cols=277 Identities=17% Similarity=0.171 Sum_probs=225.7
Q ss_pred ccchHHHHHHHHhhcCC-CCCeEEEEEEecCCCcHHHHHHHHHH----HHhCCCCceEEEEecchhhccCCCHHHHHHHH
Q 041067 165 VGVESKVEEIESILGVE-SKDVYSLGIWGIGGIGKTTIARAIFD----KISGDFEGSCFLENVREESQRSGGLSCLQQKL 239 (770)
Q Consensus 165 vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 239 (770)
|||++++++|.++|..+ ...+++|+|+|||||||||||+++|+ +++.+|+.++|++ +++... . +...++..+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~-~-~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP-K-STFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST-T-HHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC-C-CHHHHHHHH
Confidence 59999999999999754 34689999999999999999999997 5889999999995 555432 3 678888999
Q ss_pred HHHHhcCCC-----Cc------chHHHHHHHHCCC-cEEEEEeCCCChHhHHHHHhcccCCCCCceEEEEcCchhhhhhc
Q 041067 240 LSNLLKHKN-----VM------PFIDLIFRRLSRM-KVLIVFDDVTCLSQLQSLIGSLYWLTPVSRIIITTRNKQVLRNW 307 (770)
Q Consensus 240 l~~~~~~~~-----~~------~~~~~l~~~L~~k-r~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~ 307 (770)
+.++..... .. .....+++.|+++ ||||||||||+.+++ .+.. .+||+||||||++.++..+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHc
Confidence 988875421 11 2478899999996 999999999998876 3322 2899999999999999887
Q ss_pred C-cceEEEeCccChHHHHHHHH-------------------HhccCCCchhHHHHhhHhcCCCHHHHHHHHHH-HHhccc
Q 041067 308 G-VRKIYEMKALEYHHAIELFI-------------------MKYAQGVPLALKVLGCFLYEREKEVWESAIDK-LQRILL 366 (770)
Q Consensus 308 ~-~~~~~~l~~L~~~ea~~Lf~-------------------~~~~~glPLal~~~g~~L~~~~~~~w~~~l~~-l~~~~~ 366 (770)
+ ...+|++++|+.++||+||. +++|+|+||||+++|+.++.++ .+|...+.. +.....
T Consensus 282 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~ 360 (549)
T 2a5y_B 282 SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGL 360 (549)
T ss_dssp CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCS
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcccH
Confidence 6 44789999999999999997 8899999999999999998774 233333322 233245
Q ss_pred hhHHHHHHHhHhcCCHHHHHHHh-----------hcccccCCCChhHHHHHHHhc--CCCch-----------hhHHHhh
Q 041067 367 ASIFEVLKISYDSLDDKEKNIFL-----------DVACFFQGEDVDPVMKFFNAS--GFYPE-----------IGMSVLV 422 (770)
Q Consensus 367 ~~i~~~l~~sy~~L~~~~k~~fl-----------~~a~f~~~~~~~~l~~~~~~~--g~~~~-----------~~~~~L~ 422 (770)
..+..++.+||+.||++.|.||+ |||+||+++.++ +.+|+++ ||+.. .++++|+
T Consensus 361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~ 438 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLS 438 (549)
T ss_dssp STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHH
Confidence 67888899999999999999999 999999999888 7899999 77643 2599999
Q ss_pred hccceeEecC---CeEEecHHHHHHHHHHHhhhc
Q 041067 423 DKSLIAIDSY---NKITMHDLLQELGKEIVRQES 453 (770)
Q Consensus 423 ~~sLi~~~~~---~~~~mHdl~~~~~~~i~~~e~ 453 (770)
++||++.... .+|+|||++|++|++++.+++
T Consensus 439 ~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 439 KRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 9999998643 469999999999999988775
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1.2e-39 Score=303.79 Aligned_cols=144 Identities=38% Similarity=0.593 Sum_probs=122.0
Q ss_pred echhhhhhh------hhhhhcCCCCCCCcchHHHHHHHHhccceeEeecCCccCchhhHHHHHHHHHhhccCCcEEEeEE
Q 041067 6 NFQLKVYKV------AELIKRRGVHGGDEISKSLVNVIEASAISVIVFSEGYASSRSCLDELVKILECKKEYAQIVIPFF 79 (770)
Q Consensus 6 ~~~~~~~~~------~~~~d~~~~~~g~~~~~~l~~ai~~s~~~ivv~s~~y~~s~~cl~El~~i~~~~~~~~~~v~pvf 79 (770)
+|+.+||+. .+|+|++++++|+.|.++|.+||++|+++|||||+|||+|+||++||++|++|++..+++|+|||
T Consensus 23 ~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~~~~~~ViPIf 102 (176)
T 3jrn_A 23 NFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIF 102 (176)
T ss_dssp THHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHHTTSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHHHhhhccCCCEEEEEE
Confidence 688888865 49999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCccccccCcHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhHHHHhHhhhhhccccc
Q 041067 80 YRVDPSDVRNQTGSFGDSFSKLEERLKENTEKLRSWRKALKEAASLSGFLSLNIRHESEFINEVGNDILKRLDE 153 (770)
Q Consensus 80 ~~v~p~~vr~~~~~~~~~f~~~~~~~~~~~~~v~~w~~al~~~a~~~g~~~~~~~~e~~~i~~i~~~i~~~~~~ 153 (770)
|+|||++||+|+|+|++||.+|+++ .+.+++++||+||+++|+++||+.. ++|+++|++||++|++++..
T Consensus 103 y~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~--~~e~~~i~~Iv~~v~~~l~~ 172 (176)
T 3jrn_A 103 YGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG--DDDSKLVDKIANEISNKKTI 172 (176)
T ss_dssp CSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC--SCHHHHHHHHHHHHHTTCC-
T ss_pred ecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC--CCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999986 4678999999999999999999983 67999999999999999986
No 3
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=3.9e-39 Score=304.58 Aligned_cols=147 Identities=31% Similarity=0.566 Sum_probs=137.5
Q ss_pred Eechhhhhhh------hhhhhcCCCCCCCcchHHHHHHHHhccceeEeecCCccCchhhHHHHHHHHHhhcc-CCcEEEe
Q 041067 5 WNFQLKVYKV------AELIKRRGVHGGDEISKSLVNVIEASAISVIVFSEGYASSRSCLDELVKILECKKE-YAQIVIP 77 (770)
Q Consensus 5 ~~~~~~~~~~------~~~~d~~~~~~g~~~~~~l~~ai~~s~~~ivv~s~~y~~s~~cl~El~~i~~~~~~-~~~~v~p 77 (770)
++|+.+||+. .+|+|++++++|+.|.++|.+||++|+++|||||+|||+|+||++||++||+|++. .+++|+|
T Consensus 49 ~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~e~~~~~~~~~ViP 128 (204)
T 3ozi_A 49 EQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILP 128 (204)
T ss_dssp TTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHHHHHHHHCTTSEECC
T ss_pred HHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHHHHHHHhcCCeeeEE
Confidence 4788888864 48999999999999999999999999999999999999999999999999999764 6899999
Q ss_pred EEEEecCCccccccCcHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccccccccccchhhHHHHhHhhhhhccccc
Q 041067 78 FFYRVDPSDVRNQTGSFGDSFSKLEERLKENTEKLRSWRKALKEAASLSGFLSLNIRHESEFINEVGNDILKRLDE 153 (770)
Q Consensus 78 vf~~v~p~~vr~~~~~~~~~f~~~~~~~~~~~~~v~~w~~al~~~a~~~g~~~~~~~~e~~~i~~i~~~i~~~~~~ 153 (770)
|||+|||++||+|+|+|++||.+|++++ ..+++++||+||++||+++||+..+...|+++|++|+++|+.+++.
T Consensus 129 IFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 129 IFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHISK 202 (204)
T ss_dssp EEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBEEECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCceecCCCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999876 4578999999999999999999998889999999999999998864
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.3e-36 Score=349.41 Aligned_cols=264 Identities=15% Similarity=0.151 Sum_probs=209.4
Q ss_pred CCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHH--HhCCCCc-eEEEEecchhhccCCCHHHHHHH
Q 041067 162 NKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDK--ISGDFEG-SCFLENVREESQRSGGLSCLQQK 238 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~--~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~~ 238 (770)
+..|||++++++|.++|... +.+++|+|+||||+||||||+++|++ ++.+|+. ++|++ +++. . +...+...
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-Vs~~---~-d~~~IL~~ 201 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKNC---N-SPETVLEM 201 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE-CCCS---S-SHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE-eCCC---C-CHHHHHHH
Confidence 44699999999999999743 34789999999999999999999974 7889998 56665 5443 2 44455555
Q ss_pred HHHHHhc-------CCCC---c-----chHHHHHHHH---CCCcEEEEEeCCCChHhHHHHHhcccCCCCCceEEEEcCc
Q 041067 239 LLSNLLK-------HKNV---M-----PFIDLIFRRL---SRMKVLIVFDDVTCLSQLQSLIGSLYWLTPVSRIIITTRN 300 (770)
Q Consensus 239 ll~~~~~-------~~~~---~-----~~~~~l~~~L---~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~ 300 (770)
+...+.. ..+. . .....+++.| .++|+||||||||+.++|+.+ ++||+||||||+
T Consensus 202 Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd 274 (1221)
T 1vt4_I 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSC
T ss_pred HHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccC
Confidence 5443211 0110 0 2345666665 689999999999999988875 279999999999
Q ss_pred hhhhhhcCcceEEEeC------ccChHHHHHHHH-----------HhccCCCchhHHHHhhHhcCC--CHHHHHHHHHHH
Q 041067 301 KQVLRNWGVRKIYEMK------ALEYHHAIELFI-----------MKYAQGVPLALKVLGCFLYER--EKEVWESAIDKL 361 (770)
Q Consensus 301 ~~v~~~~~~~~~~~l~------~L~~~ea~~Lf~-----------~~~~~glPLal~~~g~~L~~~--~~~~w~~~l~~l 361 (770)
+.++..+.....|.++ +|+.+||++||+ .+.|+|+||||+++|+.|+++ +.++|+..
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~---- 350 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV---- 350 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHC----
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcC----
Confidence 9988654444456676 899999999997 456999999999999999987 67888763
Q ss_pred HhccchhHHHHHHHhHhcCCHHH-HHHHhhcccccCCCCh--hHHHHHHHhcCC-CchhhHHHhhhccceeEec-CCeEE
Q 041067 362 QRILLASIFEVLKISYDSLDDKE-KNIFLDVACFFQGEDV--DPVMKFFNASGF-YPEIGMSVLVDKSLIAIDS-YNKIT 436 (770)
Q Consensus 362 ~~~~~~~i~~~l~~sy~~L~~~~-k~~fl~~a~f~~~~~~--~~l~~~~~~~g~-~~~~~~~~L~~~sLi~~~~-~~~~~ 436 (770)
....+..+|++||+.||+++ |.||++||+||+++.+ +.++.+|+++|. ....++++|+++||++... .+.|+
T Consensus 351 ---~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYr 427 (1221)
T 1vt4_I 351 ---NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427 (1221)
T ss_dssp ---SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEB
T ss_pred ---ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEE
Confidence 35789999999999999999 9999999999998655 568999998863 2456799999999999863 56899
Q ss_pred ecHHHHHHH
Q 041067 437 MHDLLQELG 445 (770)
Q Consensus 437 mHdl~~~~~ 445 (770)
|||++++++
T Consensus 428 MHDLllELr 436 (1221)
T 1vt4_I 428 IPSIYLELK 436 (1221)
T ss_dssp CCCHHHHHH
T ss_pred ehHHHHHHh
Confidence 999998854
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.4e-36 Score=375.61 Aligned_cols=287 Identities=21% Similarity=0.297 Sum_probs=232.3
Q ss_pred cCCCCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHH---HhCCCCceEEEEecchhhccCCCH
Q 041067 156 RPRDNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDK---ISGDFEGSCFLENVREESQRSGGL 232 (770)
Q Consensus 156 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~ 232 (770)
..|..+..||||++++++|.++|...++.+++|+|+||||+||||||+++|++ ...+|...+||.++++... . ..
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~ 195 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK-S-GL 195 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH-H-HH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc-h-HH
Confidence 45566778999999999999999876778999999999999999999999976 4666776664444554321 1 23
Q ss_pred HHHHHHHHHHHhcCCCC--------cchHHHHHHHHCCC--cEEEEEeCCCChHhHHHHHhcccCCCCCceEEEEcCchh
Q 041067 233 SCLQQKLLSNLLKHKNV--------MPFIDLIFRRLSRM--KVLIVFDDVTCLSQLQSLIGSLYWLTPVSRIIITTRNKQ 302 (770)
Q Consensus 233 ~~l~~~ll~~~~~~~~~--------~~~~~~l~~~L~~k--r~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~ 302 (770)
......+...+...... ....+.+++.+.++ |+||||||||+.++|+.+ ++||+||||||++.
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHH
Confidence 33445555555433211 14556677777766 999999999998877653 78999999999999
Q ss_pred hhhh-cCcceEEEeCc-cChHHHHHHHH-----------------HhccCCCchhHHHHhhHhcCCCHHHHHHHHHHHHh
Q 041067 303 VLRN-WGVRKIYEMKA-LEYHHAIELFI-----------------MKYAQGVPLALKVLGCFLYEREKEVWESAIDKLQR 363 (770)
Q Consensus 303 v~~~-~~~~~~~~l~~-L~~~ea~~Lf~-----------------~~~~~glPLal~~~g~~L~~~~~~~w~~~l~~l~~ 363 (770)
++.. .+....+.++. |+++||++||. +++|+|+||||+++|++|+.+. ..|...++.+..
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~ 347 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQN 347 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHS
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhh
Confidence 9854 45667899996 99999999997 8999999999999999998775 479999988865
Q ss_pred cc-----------chhHHHHHHHhHhcCCHHHHHHHhhcccccCCC--ChhHHHHHHHhcCCCchhhHHHhhhccceeEe
Q 041067 364 IL-----------LASIFEVLKISYDSLDDKEKNIFLDVACFFQGE--DVDPVMKFFNASGFYPEIGMSVLVDKSLIAID 430 (770)
Q Consensus 364 ~~-----------~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~g~~~~~~~~~L~~~sLi~~~ 430 (770)
.. .+.+..++.+||+.|++++|.||++||+||+++ +.+.++.+|.+++...+.++++|+++||++..
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~ 427 (1249)
T 3sfz_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCN 427 (1249)
T ss_dssp CCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEE
T ss_pred hhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEe
Confidence 43 246999999999999999999999999999985 45679999988777778889999999999987
Q ss_pred cCCe---EEecHHHHHHHHHHHhhh
Q 041067 431 SYNK---ITMHDLLQELGKEIVRQE 452 (770)
Q Consensus 431 ~~~~---~~mHdl~~~~~~~i~~~e 452 (770)
.++. |+|||++|+++++.+.++
T Consensus 428 ~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 428 RNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred cCCCceEEEecHHHHHHHHhhhhHH
Confidence 6554 999999999999887654
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=326.57 Aligned_cols=281 Identities=22% Similarity=0.279 Sum_probs=216.1
Q ss_pred cCCCCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHH---hCCCC-ceEEEEecchhhccCCC
Q 041067 156 RPRDNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKI---SGDFE-GSCFLENVREESQRSGG 231 (770)
Q Consensus 156 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~---~~~f~-~~~~~~~~~~~~~~~~~ 231 (770)
..|..+..||||+.++++|.++|...++..++|+|+||||+||||||++++++. ..+|+ .++|++ +...... .
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~~~~--~ 194 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQDKS--G 194 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESCCHH--H
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCCchH--H
Confidence 445667789999999999999998655678999999999999999999999753 77896 566665 4332111 1
Q ss_pred HHHHHHHHHHHHhcCC-----C--C-cchHHHHHHHHCC--CcEEEEEeCCCChHhHHHHHhcccCCCCCceEEEEcCch
Q 041067 232 LSCLQQKLLSNLLKHK-----N--V-MPFIDLIFRRLSR--MKVLIVFDDVTCLSQLQSLIGSLYWLTPVSRIIITTRNK 301 (770)
Q Consensus 232 ~~~l~~~ll~~~~~~~-----~--~-~~~~~~l~~~L~~--kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~ 301 (770)
+..-...+...+.... . . ......+++.+.+ +++||||||||+..+++. +++|++||||||+.
T Consensus 195 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 195 LLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEESCG
T ss_pred HHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH-------hcCCCeEEEECCCc
Confidence 1111222233333111 0 1 1445667777765 789999999999776543 37899999999999
Q ss_pred hhhhhcCcceEEEe---CccChHHHHHHHH-----------------HhccCCCchhHHHHhhHhcCCCHHHHHHHHHHH
Q 041067 302 QVLRNWGVRKIYEM---KALEYHHAIELFI-----------------MKYAQGVPLALKVLGCFLYEREKEVWESAIDKL 361 (770)
Q Consensus 302 ~v~~~~~~~~~~~l---~~L~~~ea~~Lf~-----------------~~~~~glPLal~~~g~~L~~~~~~~w~~~l~~l 361 (770)
.++..++ ...+++ ++|+.+||++||. +++|+|+||||+.+|+.++.+. ..|...++.+
T Consensus 268 ~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l 345 (591)
T 1z6t_A 268 SVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQL 345 (591)
T ss_dssp GGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHH
T ss_pred HHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHH
Confidence 9887654 345555 5899999999997 8899999999999999998764 3799888888
Q ss_pred Hhcc-----------chhHHHHHHHhHhcCCHHHHHHHhhcccccCCCC--hhHHHHHHHhcCCCchhhHHHhhhcccee
Q 041067 362 QRIL-----------LASIFEVLKISYDSLDDKEKNIFLDVACFFQGED--VDPVMKFFNASGFYPEIGMSVLVDKSLIA 428 (770)
Q Consensus 362 ~~~~-----------~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~~~~~~g~~~~~~~~~L~~~sLi~ 428 (770)
.... ...+..++..||+.||++.|.||+++|+||.+.. .+.+..+|.+.+......++.|+++||++
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~ 425 (591)
T 1z6t_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLF 425 (591)
T ss_dssp HSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSE
T ss_pred HHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeE
Confidence 7543 2479999999999999999999999999998754 46688888765444567799999999998
Q ss_pred EecC---CeEEecHHHHHHHHHH
Q 041067 429 IDSY---NKITMHDLLQELGKEI 448 (770)
Q Consensus 429 ~~~~---~~~~mHdl~~~~~~~i 448 (770)
...+ ..|.||+++|+++++.
T Consensus 426 ~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 426 CDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp EEEETTEEEEECCHHHHHHHHHH
T ss_pred EecCCCccEEEEcHHHHHHHHhh
Confidence 7643 2699999999999877
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=5.2e-24 Score=226.68 Aligned_cols=235 Identities=22% Similarity=0.255 Sum_probs=165.1
Q ss_pred CCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCC-cccccccccCCCCccccccccccCcCC
Q 041067 503 KMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLS-AEKLMLLEVPDSDIEQLWDCVKHYRKL 581 (770)
Q Consensus 503 ~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~-~~~L~~L~l~~~~i~~l~~~~~~l~~L 581 (770)
...+++.|++++|.+. .+|..+..++ +|++|++.+|.+..+|..+. +.+|++|++++|.+..+|..+..+++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~-----~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 152 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLS-----HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRL 152 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGT-----TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTC
T ss_pred cccceeEEEccCCCch-hcChhhhhCC-----CCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCC
Confidence 3467788888877776 4666655544 67777777777666665443 466666666666666665555555566
Q ss_pred cEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc--cCccEEec
Q 041067 582 NQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS--GNISWLFL 659 (770)
Q Consensus 582 ~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~l 659 (770)
++|++++|+.+ ..+|. .+.. + .++..+..+++|++|++++|. ++.+|..+. ++|++|++
T Consensus 153 ~~L~L~~n~~~-~~~p~--~~~~------~---------~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 153 RELSIRACPEL-TELPE--PLAS------T---------DASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKI 213 (328)
T ss_dssp CEEEEEEETTC-CCCCS--CSEE------E---------C-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEE
T ss_pred CEEECCCCCCc-cccCh--hHhh------c---------cchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEc
Confidence 66655555444 33332 1111 0 000111236666666666654 335555444 56666666
Q ss_pred cCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCc-cc
Q 041067 660 RETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIE-RI 738 (770)
Q Consensus 660 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~-~l 738 (770)
++|.+..+|..+..+++|++|++++|...+.+|..++.+++|++|++++|...+.+|..++.+++|+.|+|++|++. .+
T Consensus 214 ~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 214 RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp ESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred cCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 66777788888999999999999999999999999999999999999999999999999999999999999998866 89
Q ss_pred chhhhCCCCCcEEecccCccCCcCC
Q 041067 739 PKSISQLLMLRYLLLSYSESLQSSP 763 (770)
Q Consensus 739 p~~l~~l~~L~~L~l~~c~~L~~lP 763 (770)
|.+++++++|+.+++..+. +..++
T Consensus 294 P~~l~~L~~L~~l~l~~~~-~~~l~ 317 (328)
T 4fcg_A 294 PSLIAQLPANCIILVPPHL-QAQLD 317 (328)
T ss_dssp CGGGGGSCTTCEEECCGGG-SCC--
T ss_pred cHHHhhccCceEEeCCHHH-HHHHh
Confidence 9999999999999998765 44443
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=6.1e-24 Score=252.59 Aligned_cols=261 Identities=18% Similarity=0.228 Sum_probs=183.8
Q ss_pred CcccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCC-CCCCCCC-cccccccccCCCCcc-cccc
Q 041067 497 NPSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLK-SLPSNLS-AEKLMLLEVPDSDIE-QLWD 573 (770)
Q Consensus 497 ~~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~-~lp~~~~-~~~L~~L~l~~~~i~-~l~~ 573 (770)
.+..|.++++|+.|++++|.+.+.+|..+..++ +|++|++.+|.+. .+|..+. +.+|++|++++|.+. .+|.
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-----~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 484 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-----KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-----TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred cCHHHhcCCCCCEEECcCCcccCcccHHHhcCC-----CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH
Confidence 355566667777777777666666666665554 6677777776666 4554443 466777777777666 4566
Q ss_pred ccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc--
Q 041067 574 CVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS-- 651 (770)
Q Consensus 574 ~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~-- 651 (770)
.+..+++|+.|++++|... ..+|. .+.++++|++|+|++|...+.+|..++.+++|++|++++|...+.+|....
T Consensus 485 ~l~~l~~L~~L~L~~N~l~-~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~ 561 (768)
T 3rgz_A 485 GLSNCTNLNWISLSNNRLT-GEIPK--WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561 (768)
T ss_dssp GGGGCTTCCEEECCSSCCC-SCCCG--GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred HHhcCCCCCEEEccCCccC-CcCCh--HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence 6666777777777766532 34443 455666677777777766566666666777777777777665555555433
Q ss_pred cCccEE----------------------------------------------eccCcCcc-ccCcccccCCCCCEEeccC
Q 041067 652 GNISWL----------------------------------------------FLRETAIE-ELPSSIERLHRLGYLDLLD 684 (770)
Q Consensus 652 ~~L~~L----------------------------------------------~l~~~~i~-~lp~~i~~l~~L~~L~L~~ 684 (770)
..+..+ ++..+.+. .+|..++.+++|+.|++++
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~ 641 (768)
T 3rgz_A 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641 (768)
T ss_dssp TTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS
T ss_pred cchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcC
Confidence 111111 11111111 3455566778899999999
Q ss_pred CCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCc-ccchhhhCCCCCcEEecccCccCCcCC
Q 041067 685 CKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIE-RIPKSISQLLMLRYLLLSYSESLQSSP 763 (770)
Q Consensus 685 ~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~l~~c~~L~~lP 763 (770)
|...+.+|..++++++|+.|++++|...+.+|..++.+++|+.|+|++|+++ .+|..+.++++|+.|++++|+--..+|
T Consensus 642 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 9988999999999999999999999999999999999999999999999999 889999999999999999998767777
Q ss_pred CC
Q 041067 764 KP 765 (770)
Q Consensus 764 ~l 765 (770)
+.
T Consensus 722 ~~ 723 (768)
T 3rgz_A 722 EM 723 (768)
T ss_dssp SS
T ss_pred Cc
Confidence 53
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=4.4e-24 Score=225.82 Aligned_cols=251 Identities=17% Similarity=0.215 Sum_probs=205.8
Q ss_pred CCCceEEEecCCCCC--CccCCccCCCCCCCCceeEEEEcC-CCCC-CCCCCCC-cccccccccCCCCcc-ccccccccC
Q 041067 505 PKLRFLKFYSSSFNG--ENKCKISYLQDPGFGEVKYLHWYG-YPLK-SLPSNLS-AEKLMLLEVPDSDIE-QLWDCVKHY 578 (770)
Q Consensus 505 ~~Lr~L~l~~~~l~~--~~p~~l~~l~~~~l~~Lr~L~l~~-~~l~-~lp~~~~-~~~L~~L~l~~~~i~-~l~~~~~~l 578 (770)
.+++.|+++++.+.+ .+|..+..++ +|++|++.+ +.+. .+|..+. +.+|++|++++|.+. .+|..+..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~-----~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLP-----YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCT-----TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCC-----CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 457777777777776 6666666654 777777774 5544 5665553 578888888888887 678888899
Q ss_pred cCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCC-CCcEEEecCCCCCCccCCccc-cCccE
Q 041067 579 RKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLE-FLTKLNLSGCSKLKRLPEISS-GNISW 656 (770)
Q Consensus 579 ~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~L~~~~~l~~lp~~~~-~~L~~ 656 (770)
++|++|+++++..- ..+|. .+.++++|++|++++|.....+|..++.++ +|++|++++|.....+|..+. .+|++
T Consensus 125 ~~L~~L~Ls~N~l~-~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~ 201 (313)
T 1ogq_A 125 KTLVTLDFSYNALS-GTLPP--SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF 201 (313)
T ss_dssp TTCCEEECCSSEEE-SCCCG--GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSE
T ss_pred CCCCEEeCCCCccC-CcCCh--HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccE
Confidence 99999999987643 34443 677889999999999986668999999998 999999999986667787766 45999
Q ss_pred EeccCcCcc-ccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCC
Q 041067 657 LFLRETAIE-ELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNI 735 (770)
Q Consensus 657 L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l 735 (770)
|++++|.+. ..|..+..+++|+.|++++|...+..|. +..+++|++|++++|...+.+|..+..+++|+.|++++|.+
T Consensus 202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 999999988 5677789999999999999987666665 88999999999999998889999999999999999999999
Q ss_pred c-ccchhhhCCCCCcEEecccCccCCcCCCC
Q 041067 736 E-RIPKSISQLLMLRYLLLSYSESLQSSPKP 765 (770)
Q Consensus 736 ~-~lp~~l~~l~~L~~L~l~~c~~L~~lP~l 765 (770)
+ .+|.. .++++|+.|++++|+.+...|.-
T Consensus 281 ~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~ 310 (313)
T 1ogq_A 281 CGEIPQG-GNLQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp EEECCCS-TTGGGSCGGGTCSSSEEESTTSS
T ss_pred cccCCCC-ccccccChHHhcCCCCccCCCCC
Confidence 9 77765 88999999999999988876643
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=1.7e-23 Score=248.66 Aligned_cols=263 Identities=21% Similarity=0.216 Sum_probs=200.2
Q ss_pred cccCCCCCceEEEecCCCCCCccCCccCCC----------------------CCCCCceeEEEEcCCCCC-CCCCCCC-c
Q 041067 500 TFTKMPKLRFLKFYSSSFNGENKCKISYLQ----------------------DPGFGEVKYLHWYGYPLK-SLPSNLS-A 555 (770)
Q Consensus 500 ~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~----------------------~~~l~~Lr~L~l~~~~l~-~lp~~~~-~ 555 (770)
.|.++++|+.|++++|.+.+.+|..+..++ ...+.+|++|++.+|.+. .+|..+. +
T Consensus 338 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l 417 (768)
T 3rgz_A 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417 (768)
T ss_dssp HHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC
T ss_pred HHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC
Confidence 355666666666666655554554443332 001345667777766665 4555443 5
Q ss_pred ccccccccCCCCcc-ccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcE
Q 041067 556 EKLMLLEVPDSDIE-QLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTK 634 (770)
Q Consensus 556 ~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 634 (770)
.+|++|++++|.+. .+|..+..+++|+.|++++|... ..+|. .+.++++|++|++++|.....+|..++.+++|++
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 494 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE-GEIPQ--ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC-SCCCG--GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc-CcCCH--HHcCCCCceEEEecCCcccCcCCHHHhcCCCCCE
Confidence 77788888887776 56667777888888888876543 34443 5667788888888888877788888888889999
Q ss_pred EEecCCCCCCccCCccc--cCccEEeccCcCcc-ccCcccccCCCCCEEeccCCCCCCCCCcc-----------------
Q 041067 635 LNLSGCSKLKRLPEISS--GNISWLFLRETAIE-ELPSSIERLHRLGYLDLLDCKRLKSLPRS----------------- 694 (770)
Q Consensus 635 L~L~~~~~l~~lp~~~~--~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp~~----------------- 694 (770)
|++++|...+.+|..++ ++|++|++++|.+. .+|..++.+++|+.|++++|...+.+|..
T Consensus 495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~ 574 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence 99999887778887766 78999999998887 78888999999999999888776666543
Q ss_pred -----------------------------------------------------cCCCCCCcEEEeecCCCCcccCcccCC
Q 041067 695 -----------------------------------------------------LWMLKSLGVLNLSGCSNLQRLPECLAQ 721 (770)
Q Consensus 695 -----------------------------------------------------l~~l~~L~~L~l~~~~~~~~lp~~l~~ 721 (770)
++.+++|+.|++++|...+.+|..++.
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~ 654 (768)
T 3rgz_A 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654 (768)
T ss_dssp EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc
Confidence 334578999999999999999999999
Q ss_pred CCCCcEEEccCCCCc-ccchhhhCCCCCcEEecccCccCCcCCCC
Q 041067 722 FSSPIILNLAKTNIE-RIPKSISQLLMLRYLLLSYSESLQSSPKP 765 (770)
Q Consensus 722 l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~l~~c~~L~~lP~l 765 (770)
+++|+.|+|++|.++ .+|..++++++|+.|++++|+--..+|+.
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 999999999999999 89999999999999999999865677753
No 11
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=6.2e-23 Score=218.32 Aligned_cols=230 Identities=22% Similarity=0.304 Sum_probs=164.8
Q ss_pred eEEEEEecCCcceeeecCcccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCC-cccc
Q 041067 480 KIEGICLDMSKVKEIHLNPSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLS-AEKL 558 (770)
Q Consensus 480 ~i~~i~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~-~~~L 558 (770)
.+..+.+...... .+ |..+.++++|++|++++|.+. .+|..+..++ +|++|++++|.+..+|..+. +.+|
T Consensus 82 ~l~~L~L~~n~l~--~l-p~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~-----~L~~L~Ls~n~l~~lp~~l~~l~~L 152 (328)
T 4fcg_A 82 GRVALELRSVPLP--QF-PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA-----GLETLTLARNPLRALPASIASLNRL 152 (328)
T ss_dssp TCCEEEEESSCCS--SC-CSCGGGGTTCSEEEEESSCCC-CCCSCGGGGT-----TCSEEEEESCCCCCCCGGGGGCTTC
T ss_pred ceeEEEccCCCch--hc-ChhhhhCCCCCEEECCCCCcc-chhHHHhccC-----CCCEEECCCCccccCcHHHhcCcCC
Confidence 3444544444333 22 455778999999999999998 6888887776 99999999999999998764 6999
Q ss_pred cccccCCCC-ccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEe
Q 041067 559 MLLEVPDSD-IEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNL 637 (770)
Q Consensus 559 ~~L~l~~~~-i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L 637 (770)
++|++++|+ +..+|..+.. ..+ ...+.++++|++|++++|. +..+|..++.+++|++|++
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~------~~~------------~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLAS------TDA------------SGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKI 213 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEE------EC-------------CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEE
T ss_pred CEEECCCCCCccccChhHhh------ccc------------hhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEc
Confidence 999999964 4566665443 000 0123344555555555554 3355555555566666666
Q ss_pred cCCCCCCccCCccc--cCccEEeccCcCc-cccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcc
Q 041067 638 SGCSKLKRLPEISS--GNISWLFLRETAI-EELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQR 714 (770)
Q Consensus 638 ~~~~~l~~lp~~~~--~~L~~L~l~~~~i-~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~ 714 (770)
++|. +..+|.... ++|++|++++|.+ ..+|..++.+++|++|++++|...+.+|..+.++++|++|++++|+..+.
T Consensus 214 ~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 214 RNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp ESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred cCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 6554 333444333 5566666665443 36777888999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCCcEEEccCCCCccc
Q 041067 715 LPECLAQFSSPIILNLAKTNIERI 738 (770)
Q Consensus 715 lp~~l~~l~~L~~L~L~~~~l~~l 738 (770)
+|..++++++|+.+.+..+.+..+
T Consensus 293 iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 293 LPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp CCGGGGGSCTTCEEECCGGGSCC-
T ss_pred ccHHHhhccCceEEeCCHHHHHHH
Confidence 999999999999999887655433
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=2.7e-22 Score=223.93 Aligned_cols=133 Identities=20% Similarity=0.134 Sum_probs=69.4
Q ss_pred CCcEEEecCCCCCCccCCccc--cCccEEeccCcCcccc-CcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEee
Q 041067 631 FLTKLNLSGCSKLKRLPEISS--GNISWLFLRETAIEEL-PSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLS 707 (770)
Q Consensus 631 ~L~~L~L~~~~~l~~lp~~~~--~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~ 707 (770)
+|++|++++|......|..+. ++|++|++++|.+..+ |..+..+++|++|++++|...+..|..+..+++|++|+++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 344444444433333333332 4555555555555544 3345555566666666555433334455556666666666
Q ss_pred cCCCCcccCcccCCCCCCcEEEccCCCCcccchh-hhCCCCCcEEecccCccCCcCC
Q 041067 708 GCSNLQRLPECLAQFSSPIILNLAKTNIERIPKS-ISQLLMLRYLLLSYSESLQSSP 763 (770)
Q Consensus 708 ~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~c~~L~~lP 763 (770)
+|...+..|..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|+--...|
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 6555444455556666666666666666655542 3555666666666665333333
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=1.4e-23 Score=243.73 Aligned_cols=227 Identities=16% Similarity=0.133 Sum_probs=177.4
Q ss_pred CCceeEEEEcCCCCCC------------------CCCCCC---cccccccccCCCCcc-ccccccccCcCCcEEccCcCc
Q 041067 533 FGEVKYLHWYGYPLKS------------------LPSNLS---AEKLMLLEVPDSDIE-QLWDCVKHYRKLNQIIPAACN 590 (770)
Q Consensus 533 l~~Lr~L~l~~~~l~~------------------lp~~~~---~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~L~~~~ 590 (770)
+.+|++|++++|.+.. +|..+. +.+|++|++++|.+. .+|..+..+++|++|++++|.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 3489999999999888 888776 688999999988754 678888889999999999876
Q ss_pred Cccc-cCCCCCCCCCc------cceeEEeccCCCCCcccCc--cCCCCCCCcEEEecCCCCCCccCCccc-cCccEEecc
Q 041067 591 KLIA-KTPNPMLMPRL------NKLVLLNLRGSKSLKRLPS--RIFNLEFLTKLNLSGCSKLKRLPEISS-GNISWLFLR 660 (770)
Q Consensus 591 ~l~~-~~p~~~~~~~L------~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L~l~ 660 (770)
.+.. .+|. .+.++ ++|++|++++|... .+|. .++.+++|++|++++|...+.+|.... ++|++|+++
T Consensus 285 ~l~~~~lp~--~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 285 GISGEQLKD--DWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLA 361 (636)
T ss_dssp TSCHHHHHH--HHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECC
T ss_pred CCccccchH--HHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECC
Confidence 4423 3443 33443 88899999988844 8888 888899999999998875558883222 788888998
Q ss_pred CcCccccCcccccCCC-CCEEeccCCCCCCCCCcccCCCC--CCcEEEeecCCCCcccCcccC-------CCCCCcEEEc
Q 041067 661 ETAIEELPSSIERLHR-LGYLDLLDCKRLKSLPRSLWMLK--SLGVLNLSGCSNLQRLPECLA-------QFSSPIILNL 730 (770)
Q Consensus 661 ~~~i~~lp~~i~~l~~-L~~L~L~~~~~~~~lp~~l~~l~--~L~~L~l~~~~~~~~lp~~l~-------~l~~L~~L~L 730 (770)
+|.+..+|.++..+++ |++|++++|... .+|..+..++ +|+.|++++|...+..|..+. .+++|+.|++
T Consensus 362 ~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L 440 (636)
T 4eco_A 362 YNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440 (636)
T ss_dssp SSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred CCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence 8888888888888888 889998888754 7887776654 788888888888887887777 7778888888
Q ss_pred cCCCCcccchhh-hCCCCCcEEecccCccCCcCCC
Q 041067 731 AKTNIERIPKSI-SQLLMLRYLLLSYSESLQSSPK 764 (770)
Q Consensus 731 ~~~~l~~lp~~l-~~l~~L~~L~l~~c~~L~~lP~ 764 (770)
++|.++.+|..+ ..+++|+.|++++|. ++.+|.
T Consensus 441 s~N~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~ 474 (636)
T 4eco_A 441 SNNQISKFPKELFSTGSPLSSINLMGNM-LTEIPK 474 (636)
T ss_dssp CSSCCCSCCTHHHHTTCCCSEEECCSSC-CSBCCS
T ss_pred cCCccCcCCHHHHccCCCCCEEECCCCC-CCCcCH
Confidence 888888777764 457888888888876 556664
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=4.3e-22 Score=217.58 Aligned_cols=253 Identities=14% Similarity=0.154 Sum_probs=177.6
Q ss_pred cCcccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCC-C-CcccccccccCCCCcccccc
Q 041067 496 LNPSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSN-L-SAEKLMLLEVPDSDIEQLWD 573 (770)
Q Consensus 496 ~~~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~l~~~~i~~l~~ 573 (770)
+++..|.++++|+.|++++|.+.+..|..+..++ +|++|++.+|.+..+|+. + .+.+|++|++++|.+..+|.
T Consensus 60 l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 134 (390)
T 3o6n_A 60 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-----TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 134 (390)
T ss_dssp ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CChhHhcccccCcEEECCCCcccccChhhccCCC-----CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH
Confidence 3445567777777777777776654333444443 777777777777777543 3 35777777777777777776
Q ss_pred cc-ccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCC-------------------CCc
Q 041067 574 CV-KHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLE-------------------FLT 633 (770)
Q Consensus 574 ~~-~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~-------------------~L~ 633 (770)
.+ ..+++|++|+++++.. ..++ ...+.++++|++|++++|.. ..++ ++.++ +|+
T Consensus 135 ~~~~~l~~L~~L~L~~n~l--~~~~-~~~~~~l~~L~~L~l~~n~l-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~ 208 (390)
T 3o6n_A 135 GIFHNTPKLTTLSMSNNNL--ERIE-DDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNLLSTLAIPIAVE 208 (390)
T ss_dssp TTTTTCTTCCEEECCSSCC--CBCC-TTTTSSCTTCCEEECCSSCC-SBCC--GGGCTTCSEEECCSSCCSEEECCSSCS
T ss_pred HHhcCCCCCcEEECCCCcc--CccC-hhhccCCCCCCEEECCCCcC-Cccc--cccccccceeecccccccccCCCCcce
Confidence 63 6777777777777643 2222 12456677777777777763 3222 22334 455
Q ss_pred EEEecCCCCCCccCCccccCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCc
Q 041067 634 KLNLSGCSKLKRLPEISSGNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQ 713 (770)
Q Consensus 634 ~L~L~~~~~l~~lp~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~ 713 (770)
+|++++|. +..+|.....+|+.|++++|.+... ..+..+++|++|++++|...+..|..+..+++|++|++++|. +.
T Consensus 209 ~L~l~~n~-l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~ 285 (390)
T 3o6n_A 209 ELDASHNS-INVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LV 285 (390)
T ss_dssp EEECCSSC-CCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CC
T ss_pred EEECCCCe-eeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-Cc
Confidence 55555544 3444444446788888888888776 468888999999999988766678888899999999999865 45
Q ss_pred ccCcccCCCCCCcEEEccCCCCcccchhhhCCCCCcEEecccCccCCcCC
Q 041067 714 RLPECLAQFSSPIILNLAKTNIERIPKSISQLLMLRYLLLSYSESLQSSP 763 (770)
Q Consensus 714 ~lp~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~L~~lP 763 (770)
.+|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|+ ++.+|
T Consensus 286 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~ 334 (390)
T 3o6n_A 286 ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLK 334 (390)
T ss_dssp EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCC
T ss_pred ccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc-cceeC
Confidence 57777788899999999999999888888888999999999987 66665
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=2.2e-22 Score=228.76 Aligned_cols=259 Identities=18% Similarity=0.201 Sum_probs=173.1
Q ss_pred ecCcccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCCcccccccccCCCCccc--cc
Q 041067 495 HLNPSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQ--LW 572 (770)
Q Consensus 495 ~~~~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~--l~ 572 (770)
.+.+..|.++++|++|++++|.+.+..|..+..++ +|++|++++|.++.+|.. .+.+|++|++++|.+.. +|
T Consensus 35 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p 108 (520)
T 2z7x_B 35 ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ-----ELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALPIC 108 (520)
T ss_dssp CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCT-----TCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSSCCCC
T ss_pred ccChhhccccccccEEecCCCccCCcChHHhhccc-----CCCEEecCCCceeecCcc-ccCCccEEeccCCccccccch
Confidence 34456677778888888888777765565665554 777777777777777766 67777777777777765 45
Q ss_pred cccccCcCCcEEccCcCcCc------------------------cccCCCCCCCCC------------------------
Q 041067 573 DCVKHYRKLNQIIPAACNKL------------------------IAKTPNPMLMPR------------------------ 604 (770)
Q Consensus 573 ~~~~~l~~L~~L~L~~~~~l------------------------~~~~p~~~~~~~------------------------ 604 (770)
..+..+++|++|+++++..- ....| ..+++
T Consensus 109 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~--~~l~~l~~~~l~l~l~~n~~~~~~~~~~~ 186 (520)
T 2z7x_B 109 KEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDP--EGLQDFNTESLHIVFPTNKEFHFILDVSV 186 (520)
T ss_dssp GGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCT--TTTTTCCEEEEEEECCSSSCCCCCCCCCC
T ss_pred hhhccCCcceEEEecCcccchhhccccccceeeEEEeeccccccccccc--ccccccccceEEEEeccCcchhhhhhhhh
Confidence 66777777777776664311 00001 11111
Q ss_pred --cc---------------------------------------------------------ceeEEeccCCCCCcccCcc
Q 041067 605 --LN---------------------------------------------------------KLVLLNLRGSKSLKRLPSR 625 (770)
Q Consensus 605 --L~---------------------------------------------------------~L~~L~L~~~~~l~~lp~~ 625 (770)
++ +|++|++++|...+.+|..
T Consensus 187 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 266 (520)
T 2z7x_B 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR 266 (520)
T ss_dssp TTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCC
T ss_pred hcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccc
Confidence 22 3444444444333344444
Q ss_pred C-----------------------------------------------------CCCCCCcEEEecCCCCCCccCCccc-
Q 041067 626 I-----------------------------------------------------FNLEFLTKLNLSGCSKLKRLPEISS- 651 (770)
Q Consensus 626 i-----------------------------------------------------~~l~~L~~L~L~~~~~l~~lp~~~~- 651 (770)
+ ..+++|++|++++|......|....
T Consensus 267 ~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 346 (520)
T 2z7x_B 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGH 346 (520)
T ss_dssp CCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCC
T ss_pred hhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhcc
Confidence 3 4566677777777665554555444
Q ss_pred -cCccEEeccCcCccc---cCcccccCCCCCEEeccCCCCCCCCCcc-cCCCCCCcEEEeecCCCCcccCcccCCCCCCc
Q 041067 652 -GNISWLFLRETAIEE---LPSSIERLHRLGYLDLLDCKRLKSLPRS-LWMLKSLGVLNLSGCSNLQRLPECLAQFSSPI 726 (770)
Q Consensus 652 -~~L~~L~l~~~~i~~---lp~~i~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~ 726 (770)
++|++|++++|.+.. +|..+..+++|++|++++|...+.+|.. +..+++|++|++++|...+..|..+. ++|+
T Consensus 347 l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~ 424 (520)
T 2z7x_B 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIK 424 (520)
T ss_dssp CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCC
T ss_pred CCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCC
Confidence 677777777777773 4456777777777877777765556654 66777788888887776666666554 6889
Q ss_pred EEEccCCCCcccchhhhCCCCCcEEecccCccCCcCCC
Q 041067 727 ILNLAKTNIERIPKSISQLLMLRYLLLSYSESLQSSPK 764 (770)
Q Consensus 727 ~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~L~~lP~ 764 (770)
.|++++|.++.+|..+..+++|+.|++++|+ ++.+|.
T Consensus 425 ~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~ 461 (520)
T 2z7x_B 425 VLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LKSVPD 461 (520)
T ss_dssp EEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCCT
T ss_pred EEECCCCcccccchhhhcCCCCCEEECCCCc-CCccCH
Confidence 9999999999999888899999999999996 777775
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=1.9e-22 Score=234.26 Aligned_cols=244 Identities=17% Similarity=0.205 Sum_probs=174.4
Q ss_pred cccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCC-ccc-ccccccCCCCcccccccccc
Q 041067 500 TFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLS-AEK-LMLLEVPDSDIEQLWDCVKH 577 (770)
Q Consensus 500 ~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~-~~~-L~~L~l~~~~i~~l~~~~~~ 577 (770)
.|+++++|+.|++++|.+.|.+| .+..++ +|+.|++.+|.+..+|..+. +.+ |++|++++|.+..+|..+..
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~-----~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~ 398 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEI-----KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEE-----EESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCT
T ss_pred hhccCCCCCEEeCcCCcCccchh-hhCCCC-----CCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhh
Confidence 57777777777777777776666 555443 77777777777777776654 456 77777777777777776655
Q ss_pred Cc--CCcEEccCcCcCccccCCCCCCCC-------CccceeEEeccCCCCCcccCccCC-CCCCCcEEEecCCCCCCccC
Q 041067 578 YR--KLNQIIPAACNKLIAKTPNPMLMP-------RLNKLVLLNLRGSKSLKRLPSRIF-NLEFLTKLNLSGCSKLKRLP 647 (770)
Q Consensus 578 l~--~L~~L~L~~~~~l~~~~p~~~~~~-------~L~~L~~L~L~~~~~l~~lp~~i~-~l~~L~~L~L~~~~~l~~lp 647 (770)
+. +|+.|++++|..- ...|. .++ ++.+|++|+|++|. +..+|..+. .+++|++|++++|. +..+|
T Consensus 399 ~~l~~L~~L~Ls~N~l~-~~~p~--~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~ 473 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEIG-SVDGK--NFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNM-LTEIP 473 (636)
T ss_dssp TCSSCEEEEECCSSCTT-TTTTC--SSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSC-CSBCC
T ss_pred cccCccCEEECcCCcCC-Ccchh--hhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCC-CCCcC
Confidence 43 7777777776543 33332 333 55678888888776 446666543 47778888888776 44777
Q ss_pred Cccc--c--------CccEEeccCcCccccCcccc--cCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEee------cC
Q 041067 648 EISS--G--------NISWLFLRETAIEELPSSIE--RLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLS------GC 709 (770)
Q Consensus 648 ~~~~--~--------~L~~L~l~~~~i~~lp~~i~--~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~------~~ 709 (770)
.... . +|++|++++|.+..+|..+. .+++|++|++++|...+ +|..+.++++|+.|+++ +|
T Consensus 474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp SSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred HHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccC
Confidence 6544 1 78888888888888887776 78888888888877655 77778888888888884 45
Q ss_pred CCCcccCcccCCCCCCcEEEccCCCCcccchhhhCCCCCcEEecccCc
Q 041067 710 SNLQRLPECLAQFSSPIILNLAKTNIERIPKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 710 ~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~ 757 (770)
...+.+|..++.+++|+.|++++|.++.+|..+. ++|+.|++++|+
T Consensus 553 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 553 RTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCT
T ss_pred cccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCC
Confidence 5567778888888888888888888887877655 678888888886
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=6.4e-22 Score=222.33 Aligned_cols=256 Identities=18% Similarity=0.161 Sum_probs=185.3
Q ss_pred eecCcccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCC-C-CcccccccccCCCCcccc
Q 041067 494 IHLNPSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSN-L-SAEKLMLLEVPDSDIEQL 571 (770)
Q Consensus 494 ~~~~~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~l~~~~i~~l 571 (770)
..+.+..|.++++|+.|++++|.+.+..|..+..++ +|++|++.+|.+..+|.. | .+.+|++|++++|.+..+
T Consensus 45 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 119 (477)
T 2id5_A 45 KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF-----NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL 119 (477)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-----TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE
T ss_pred ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc-----cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC
Confidence 344466778888888888888877765565666554 788888888888877754 2 467788888888777765
Q ss_pred -ccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCC------------------------CCcccCccC
Q 041067 572 -WDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSK------------------------SLKRLPSRI 626 (770)
Q Consensus 572 -~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~------------------------~l~~lp~~i 626 (770)
+..+..+++|+.|+++++..- ...| ..+.++++|++|++++|. .....+..+
T Consensus 120 ~~~~~~~l~~L~~L~l~~n~l~-~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~ 196 (477)
T 2id5_A 120 LDYMFQDLYNLKSLEVGDNDLV-YISH--RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF 196 (477)
T ss_dssp CTTTTTTCTTCCEEEECCTTCC-EECT--TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCS
T ss_pred ChhHccccccCCEEECCCCccc-eeCh--hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhc
Confidence 345667777777777765421 1111 234445555555555544 222223355
Q ss_pred CCCCCCcEEEecCCCCCCccCCccc--cCccEEeccCcCccccCc-ccccCCCCCEEeccCCCCCCCCCcccCCCCCCcE
Q 041067 627 FNLEFLTKLNLSGCSKLKRLPEISS--GNISWLFLRETAIEELPS-SIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGV 703 (770)
Q Consensus 627 ~~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~ 703 (770)
..+++|++|++++|..+..+|.... .+|++|++++|.+..+|. .+..+++|+.|++++|...+..+..+..+++|+.
T Consensus 197 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (477)
T 2id5_A 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276 (477)
T ss_dssp CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCE
T ss_pred ccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCE
Confidence 6677777777777777777766544 588899999998888884 5788899999999998865555566888999999
Q ss_pred EEeecCCCCcccCcccCCCCCCcEEEccCCCCcccchh-hhCCCCCcEEecccCc
Q 041067 704 LNLSGCSNLQRLPECLAQFSSPIILNLAKTNIERIPKS-ISQLLMLRYLLLSYSE 757 (770)
Q Consensus 704 L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~c~ 757 (770)
|++++|...+..|..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|+
T Consensus 277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred EECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 99999887777788899999999999999999977764 5788899999999887
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=4.8e-22 Score=228.09 Aligned_cols=260 Identities=18% Similarity=0.173 Sum_probs=193.1
Q ss_pred eeecCcccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccc
Q 041067 493 EIHLNPSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLW 572 (770)
Q Consensus 493 ~~~~~~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~ 572 (770)
...+.+..|.++++|+.|++++|.+.+..|..+..++ +|++|++++|.+..+|.. .+.+|++|++++|.+..++
T Consensus 64 i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~ 137 (562)
T 3a79_B 64 ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ-----DLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLP 137 (562)
T ss_dssp CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCT-----TCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCC
T ss_pred ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCC-----CCCEEECCCCcCCccCcc-ccccCCEEECCCCCccccC
Confidence 3445567899999999999999999876666666665 999999999999999988 8899999999999998765
Q ss_pred --cccccCcCCcEEccCcCcCccccCCCCCCCCCc---------------------------------------------
Q 041067 573 --DCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRL--------------------------------------------- 605 (770)
Q Consensus 573 --~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L--------------------------------------------- 605 (770)
..+..+++|++|+++++..- . ..+..+.++
T Consensus 138 ~p~~~~~l~~L~~L~L~~n~l~-~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~ 214 (562)
T 3a79_B 138 VCKEFGNLTKLTFLGLSAAKFR-Q--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN 214 (562)
T ss_dssp CCGGGGGCTTCCEEEEECSBCC-T--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCE
T ss_pred chHhhcccCcccEEecCCCccc-c--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhh
Confidence 67889999999998886421 1 111111111
Q ss_pred ------c-------------------------------------------------------ceeEEeccCCCCCcccCc
Q 041067 606 ------N-------------------------------------------------------KLVLLNLRGSKSLKRLPS 624 (770)
Q Consensus 606 ------~-------------------------------------------------------~L~~L~L~~~~~l~~lp~ 624 (770)
+ +|++|++++|...+.+|.
T Consensus 215 ~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~ 294 (562)
T 3a79_B 215 MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDR 294 (562)
T ss_dssp EEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCC
T ss_pred hcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccc
Confidence 1 344444444443334554
Q ss_pred cC-----------------------------------------------------CCCCCCcEEEecCCCCCCccCCccc
Q 041067 625 RI-----------------------------------------------------FNLEFLTKLNLSGCSKLKRLPEISS 651 (770)
Q Consensus 625 ~i-----------------------------------------------------~~l~~L~~L~L~~~~~l~~lp~~~~ 651 (770)
.+ +.+++|++|++++|......|....
T Consensus 295 ~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 374 (562)
T 3a79_B 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS 374 (562)
T ss_dssp CCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred hhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhc
Confidence 43 5667788888888775555665544
Q ss_pred --cCccEEeccCcCccccC---cccccCCCCCEEeccCCCCCCCCCcc-cCCCCCCcEEEeecCCCCcccCcccCCCCCC
Q 041067 652 --GNISWLFLRETAIEELP---SSIERLHRLGYLDLLDCKRLKSLPRS-LWMLKSLGVLNLSGCSNLQRLPECLAQFSSP 725 (770)
Q Consensus 652 --~~L~~L~l~~~~i~~lp---~~i~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L 725 (770)
++|++|++++|.+..+| ..+..+++|++|++++|...+.+|.. +..+++|++|++++|...+..|..+. ++|
T Consensus 375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L 452 (562)
T 3a79_B 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKV 452 (562)
T ss_dssp SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTC
T ss_pred ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcC
Confidence 77888888888887554 45778888888888888766656654 67778888888888877666666544 689
Q ss_pred cEEEccCCCCcccchhhhCCCCCcEEecccCccCCcCCC
Q 041067 726 IILNLAKTNIERIPKSISQLLMLRYLLLSYSESLQSSPK 764 (770)
Q Consensus 726 ~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~L~~lP~ 764 (770)
+.|++++|.++.+|..+..+++|+.|++++|+ ++.+|.
T Consensus 453 ~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~ 490 (562)
T 3a79_B 453 KVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LKSVPD 490 (562)
T ss_dssp SEEECCSSCCCCCCTTTTSSCCCSEEECCSSC-CCCCCT
T ss_pred CEEECCCCcCcccChhhcCCCCCCEEECCCCC-CCCCCH
Confidence 99999999999999888899999999999986 777775
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=5.5e-22 Score=228.98 Aligned_cols=254 Identities=14% Similarity=0.140 Sum_probs=185.4
Q ss_pred ecCcccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCC--CcccccccccCCCCccccc
Q 041067 495 HLNPSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNL--SAEKLMLLEVPDSDIEQLW 572 (770)
Q Consensus 495 ~~~~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~l~~~~i~~l~ 572 (770)
.+++..|.++++|+.|++++|.+.+..|..+..++ +|++|++.+|.+..+|+.. .+.+|++|++++|.+..+|
T Consensus 65 ~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 139 (597)
T 3oja_B 65 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-----TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139 (597)
T ss_dssp EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCC-----CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCC
Confidence 34455667778888888888877765444555554 7888888888887776542 4678888888888888777
Q ss_pred ccc-ccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCC-------------------C
Q 041067 573 DCV-KHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEF-------------------L 632 (770)
Q Consensus 573 ~~~-~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~-------------------L 632 (770)
..+ ..+++|++|++++|..- .++ +..+.++++|++|++++|.. ..+| ++.+++ |
T Consensus 140 ~~~~~~l~~L~~L~Ls~N~l~--~~~-~~~~~~l~~L~~L~L~~N~l-~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L 213 (597)
T 3oja_B 140 RGIFHNTPKLTTLSMSNNNLE--RIE-DDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNLLSTLAIPIAV 213 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCCC--BCC-TTTTTTCTTCCEEECTTSCC-SBCC--GGGCTTCSEEECCSSCCSEEECCTTC
T ss_pred HHHhccCCCCCEEEeeCCcCC--CCC-hhhhhcCCcCcEEECcCCCC-CCcC--hhhhhhhhhhhcccCccccccCCchh
Confidence 664 77788888888876532 222 12466777788888887763 3333 233444 4
Q ss_pred cEEEecCCCCCCccCCccccCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCC
Q 041067 633 TKLNLSGCSKLKRLPEISSGNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNL 712 (770)
Q Consensus 633 ~~L~L~~~~~l~~lp~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~ 712 (770)
++|++++|. +..+|.....+|+.|++++|.+... .++..+++|+.|++++|...+..|..++.+++|+.|++++|..
T Consensus 214 ~~L~ls~n~-l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l- 290 (597)
T 3oja_B 214 EELDASHNS-INVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL- 290 (597)
T ss_dssp SEEECCSSC-CCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC-
T ss_pred heeeccCCc-ccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC-
Confidence 555555544 3444444446788888888888774 5788899999999999987777788899999999999998654
Q ss_pred cccCcccCCCCCCcEEEccCCCCcccchhhhCCCCCcEEecccCccCCcCC
Q 041067 713 QRLPECLAQFSSPIILNLAKTNIERIPKSISQLLMLRYLLLSYSESLQSSP 763 (770)
Q Consensus 713 ~~lp~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~L~~lP 763 (770)
..+|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|+ +..+|
T Consensus 291 ~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~ 340 (597)
T 3oja_B 291 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLK 340 (597)
T ss_dssp CEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCC
T ss_pred CCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC-CCCcC
Confidence 457877888999999999999999999888889999999999987 55555
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=7.7e-22 Score=233.43 Aligned_cols=146 Identities=16% Similarity=0.226 Sum_probs=73.0
Q ss_pred ceeEEeccCCCCCcccCccCC-CCCCCcEEEecCCCCCCccCCccc--c--------CccEEeccCcCccccCcccc--c
Q 041067 607 KLVLLNLRGSKSLKRLPSRIF-NLEFLTKLNLSGCSKLKRLPEISS--G--------NISWLFLRETAIEELPSSIE--R 673 (770)
Q Consensus 607 ~L~~L~L~~~~~l~~lp~~i~-~l~~L~~L~L~~~~~l~~lp~~~~--~--------~L~~L~l~~~~i~~lp~~i~--~ 673 (770)
+|+.|+|++|. +..+|..+. .+++|++|+|++|. +..+|.... . +|+.|++++|.+..+|..+. .
T Consensus 674 ~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~ 751 (876)
T 4ecn_A 674 NASTVTLSYNE-IQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT 751 (876)
T ss_dssp CEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTT
T ss_pred CcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCCCCccchHHhhhcc
Confidence 45555555444 224444332 44555555555543 334444332 1 45555555555555555554 5
Q ss_pred CCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeec------CCCCcccCcccCCCCCCcEEEccCCCCcccchhhhCCCC
Q 041067 674 LHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSG------CSNLQRLPECLAQFSSPIILNLAKTNIERIPKSISQLLM 747 (770)
Q Consensus 674 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~------~~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~ 747 (770)
+++|+.|+|++|...+ +|..+.++++|+.|+|++ |...+.+|..++.+++|+.|+|++|.+..+|..+. ++
T Consensus 752 l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~ 828 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQ 828 (876)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SS
T ss_pred CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--CC
Confidence 5555555555554333 455555555555555543 33344555555555555555555555555555433 35
Q ss_pred CcEEecccCc
Q 041067 748 LRYLLLSYSE 757 (770)
Q Consensus 748 L~~L~l~~c~ 757 (770)
|+.|+|++|+
T Consensus 829 L~~LdLs~N~ 838 (876)
T 4ecn_A 829 LYILDIADNP 838 (876)
T ss_dssp SCEEECCSCT
T ss_pred CCEEECCCCC
Confidence 5555555554
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=4.3e-22 Score=235.64 Aligned_cols=229 Identities=15% Similarity=0.093 Sum_probs=141.6
Q ss_pred ceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccccccccCcC-CcEEccCcCcCccccCCCCCCCCCccceeEEec
Q 041067 535 EVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDCVKHYRK-LNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNL 613 (770)
Q Consensus 535 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~-L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L 613 (770)
+|+.|++++|.+..+|....+.+|+.|++++|.+..+|..+..+++ |+.|++++|. + ..+|........++|+.|+|
T Consensus 574 ~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L-~~lp~~~~~~~~~~L~~L~L 651 (876)
T 4ecn_A 574 KLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-L-KYIPNIFNAKSVYVMGSVDF 651 (876)
T ss_dssp TCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC-C-CSCCSCCCTTCSSCEEEEEC
T ss_pred CCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC-C-CcCchhhhccccCCCCEEEC
Confidence 5555555555555555222345555555555555555555555555 5555555543 2 24443211122233666666
Q ss_pred cCCCCCcccCc---cCC--CCCCCcEEEecCCCCCCccCCccc---cCccEEeccCcCccccCcccccCC--------CC
Q 041067 614 RGSKSLKRLPS---RIF--NLEFLTKLNLSGCSKLKRLPEISS---GNISWLFLRETAIEELPSSIERLH--------RL 677 (770)
Q Consensus 614 ~~~~~l~~lp~---~i~--~l~~L~~L~L~~~~~l~~lp~~~~---~~L~~L~l~~~~i~~lp~~i~~l~--------~L 677 (770)
++|.....+|. .++ .+++|++|++++|. +..+|.... ++|+.|++++|.+..+|..+.... +|
T Consensus 652 s~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L 730 (876)
T 4ecn_A 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730 (876)
T ss_dssp CSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGC
T ss_pred cCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCc
Confidence 66554333331 122 23356666666665 335555432 577777777777777776654332 78
Q ss_pred CEEeccCCCCCCCCCcccC--CCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccC------CCCc-ccchhhhCCCCC
Q 041067 678 GYLDLLDCKRLKSLPRSLW--MLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAK------TNIE-RIPKSISQLLML 748 (770)
Q Consensus 678 ~~L~L~~~~~~~~lp~~l~--~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~------~~l~-~lp~~l~~l~~L 748 (770)
+.|+|++|... .+|..+. .+++|+.|+|++|...+ +|..+..+++|+.|+|++ |.+. .+|..+.++++|
T Consensus 731 ~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L 808 (876)
T 4ecn_A 731 TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808 (876)
T ss_dssp CEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred cEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCC
Confidence 88888887644 7787776 88888888888876555 788888888888888866 4444 778888888888
Q ss_pred cEEecccCccCCcCCC-CCCCC
Q 041067 749 RYLLLSYSESLQSSPK-PPFRA 769 (770)
Q Consensus 749 ~~L~l~~c~~L~~lP~-lp~~l 769 (770)
+.|+|++|+ ++.+|. ++++|
T Consensus 809 ~~L~Ls~N~-L~~Ip~~l~~~L 829 (876)
T 4ecn_A 809 IQLQIGSND-IRKVDEKLTPQL 829 (876)
T ss_dssp CEEECCSSC-CCBCCSCCCSSS
T ss_pred CEEECCCCC-CCccCHhhcCCC
Confidence 888888887 588885 55554
No 22
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=3.3e-21 Score=205.51 Aligned_cols=251 Identities=16% Similarity=0.153 Sum_probs=141.1
Q ss_pred cCcccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccccc-
Q 041067 496 LNPSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDC- 574 (770)
Q Consensus 496 ~~~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~- 574 (770)
+.+..|.++++|++|++++|.+.+..|..+..++ +|++|++++|.++.+|..+. .+|++|++++|.+..++..
T Consensus 67 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~ 140 (330)
T 1xku_A 67 IKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-----KLERLYLSKNQLKELPEKMP-KTLQELRVHENEITKVRKSV 140 (330)
T ss_dssp BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT-----TCCEEECCSSCCSBCCSSCC-TTCCEEECCSSCCCBBCHHH
T ss_pred eChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC-----CCCEEECCCCcCCccChhhc-ccccEEECCCCcccccCHhH
Confidence 3344566666666666666666654455554443 66666666666666665543 5666666666666655443
Q ss_pred cccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc--c
Q 041067 575 VKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS--G 652 (770)
Q Consensus 575 ~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~--~ 652 (770)
+..+++|+.|+++++..- ..-.....+.++++|++|++++|. +..+|..+. ++|++|++++|......|..+. +
T Consensus 141 ~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~ 216 (330)
T 1xku_A 141 FNGLNQMIVVELGTNPLK-SSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLN 216 (330)
T ss_dssp HTTCTTCCEEECCSSCCC-GGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCT
T ss_pred hcCCccccEEECCCCcCC-ccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEECCCCcCCccCHHHhcCCC
Confidence 556666666666665421 100112245556666666666665 445555442 5666666666653322233333 5
Q ss_pred CccEEeccCcCccccCc-ccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccC------CCCCC
Q 041067 653 NISWLFLRETAIEELPS-SIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLA------QFSSP 725 (770)
Q Consensus 653 ~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~------~l~~L 725 (770)
+|++|++++|.+..++. .+..+++|++|++++|.. ..+|..+..+++|++|++++|...+.-+..+. ..++|
T Consensus 217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l 295 (330)
T 1xku_A 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295 (330)
T ss_dssp TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC-SSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCC
T ss_pred CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC-ccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccc
Confidence 66666666666665544 466666666666666653 35666666666666666666554333223332 23556
Q ss_pred cEEEccCCCCc---ccchhhhCCCCCcEEecccCc
Q 041067 726 IILNLAKTNIE---RIPKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 726 ~~L~L~~~~l~---~lp~~l~~l~~L~~L~l~~c~ 757 (770)
+.|++++|++. ..|..+..+++|+.+++++|+
T Consensus 296 ~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cceEeecCcccccccCccccccccceeEEEecccC
Confidence 66666666665 233455566666666666653
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=1e-21 Score=219.30 Aligned_cols=274 Identities=19% Similarity=0.200 Sum_probs=213.4
Q ss_pred EEEEEecCCcceeeecCcccccCCCCCceEEEecCCCCCCcc-CCccCCCCCCCCceeEEEEcCCCCCCC-CCCCC-ccc
Q 041067 481 IEGICLDMSKVKEIHLNPSTFTKMPKLRFLKFYSSSFNGENK-CKISYLQDPGFGEVKYLHWYGYPLKSL-PSNLS-AEK 557 (770)
Q Consensus 481 i~~i~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~~~p-~~l~~l~~~~l~~Lr~L~l~~~~l~~l-p~~~~-~~~ 557 (770)
++.+.+... ....+.+..|.++++|++|++++|.+.+.++ ..+..+ .+|++|++++|.+..+ |..+. +.+
T Consensus 32 l~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 32 VNYVDLSLN--SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL-----SSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp CCEEECCSS--CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTC-----TTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred cCEEEecCC--ccCcCChhHhccCccccEEECcCCcccceECccccccc-----ccCCEEeCCCCccCccChhhccCccc
Confidence 444444433 3334557789999999999999998876553 345555 5999999999999877 55564 799
Q ss_pred ccccccCCCCccc-cccc--cccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCC------
Q 041067 558 LMLLEVPDSDIEQ-LWDC--VKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFN------ 628 (770)
Q Consensus 558 L~~L~l~~~~i~~-l~~~--~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~------ 628 (770)
|++|++++|.+.. .+.. +..+++|++|++++|..- .++....+.++++|++|++++|......|..+..
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK--KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC--SCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccC--ccCcccccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence 9999999999985 3443 888999999999997642 3322223678899999999999865555554443
Q ss_pred ----------------------------CCCCcEEEecCCCCCCccCCcc------------------------------
Q 041067 629 ----------------------------LEFLTKLNLSGCSKLKRLPEIS------------------------------ 650 (770)
Q Consensus 629 ----------------------------l~~L~~L~L~~~~~l~~lp~~~------------------------------ 650 (770)
+++|++|++++|......|...
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence 3678888888886433222110
Q ss_pred -----------ccCccEEeccCcCcccc-CcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcc
Q 041067 651 -----------SGNISWLFLRETAIEEL-PSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPEC 718 (770)
Q Consensus 651 -----------~~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~ 718 (770)
..+|++|++++|.+..+ |..+..+++|++|++++|...+..|..+..+++|++|++++|...+..|..
T Consensus 263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 342 (455)
T 3v47_A 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM 342 (455)
T ss_dssp CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhH
Confidence 04788999999988854 667899999999999999977777888999999999999999877777888
Q ss_pred cCCCCCCcEEEccCCCCccc-chhhhCCCCCcEEecccCccCCcCCC
Q 041067 719 LAQFSSPIILNLAKTNIERI-PKSISQLLMLRYLLLSYSESLQSSPK 764 (770)
Q Consensus 719 l~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~c~~L~~lP~ 764 (770)
++.+++|+.|++++|.++.+ |..+..+++|+.|++++|+ ++++|.
T Consensus 343 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 388 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPD 388 (455)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred hcCcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCH
Confidence 99999999999999999966 7789999999999999996 777774
No 24
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=2.1e-21 Score=207.28 Aligned_cols=251 Identities=20% Similarity=0.137 Sum_probs=183.1
Q ss_pred ecCcccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccccc
Q 041067 495 HLNPSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDC 574 (770)
Q Consensus 495 ~~~~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~ 574 (770)
.+.+..|.++++|+.|++++|.+.+..|..+..++ +|++|++.+|.+..+|..+. .+|++|++++|.+..++..
T Consensus 68 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~ 141 (332)
T 2ft3_A 68 ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR-----KLQKLYISKNHLVEIPPNLP-SSLVELRIHDNRIRKVPKG 141 (332)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCT-----TCCEEECCSSCCCSCCSSCC-TTCCEEECCSSCCCCCCSG
T ss_pred ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcC-----CCCEEECCCCcCCccCcccc-ccCCEEECCCCccCccCHh
Confidence 44566788888888888888888875566666654 88888888888888887665 7888888888888887764
Q ss_pred -cccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc--
Q 041067 575 -VKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS-- 651 (770)
Q Consensus 575 -~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~-- 651 (770)
+..+++|+.|+++++..- ..-.....+..+ +|++|++++|. +..+|..+. ++|++|++++|......|..+.
T Consensus 142 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l 216 (332)
T 2ft3_A 142 VFSGLRNMNCIEMGGNPLE-NSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRY 216 (332)
T ss_dssp GGSSCSSCCEEECCSCCCB-GGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTC
T ss_pred HhCCCccCCEEECCCCccc-cCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEECCCCcCCccCHHHhcCC
Confidence 678888888888886532 111122345555 88888888887 566777653 6888888888864443334443
Q ss_pred cCccEEeccCcCccccCc-ccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCC------CCC
Q 041067 652 GNISWLFLRETAIEELPS-SIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQ------FSS 724 (770)
Q Consensus 652 ~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~------l~~ 724 (770)
++|++|++++|.+..++. .+..+++|++|++++|.. ..+|..+..+++|+.|++++|...+.-+..+.. .++
T Consensus 217 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC-CBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCC
T ss_pred CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC-eecChhhhcCccCCEEECCCCCCCccChhHcccccccccccc
Confidence 788888888888887765 678888888888888864 478888888888888888887655444444443 467
Q ss_pred CcEEEccCCCCc---ccchhhhCCCCCcEEecccCc
Q 041067 725 PIILNLAKTNIE---RIPKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 725 L~~L~L~~~~l~---~lp~~l~~l~~L~~L~l~~c~ 757 (770)
|+.|++++|++. ..|..+..+++|+.|++++|+
T Consensus 296 l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 888888888876 345567788888888888886
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=1.5e-21 Score=226.15 Aligned_cols=112 Identities=19% Similarity=0.181 Sum_probs=73.8
Q ss_pred cCccEEeccCcCccc-cCcccccCCCCCEEeccCCCCCC-CCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEE
Q 041067 652 GNISWLFLRETAIEE-LPSSIERLHRLGYLDLLDCKRLK-SLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILN 729 (770)
Q Consensus 652 ~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~ 729 (770)
++|++|++++|.+.. .|..+..+++|++|++++|...+ .+|..+..+++|++|++++|...+..|..++.+++|+.|+
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 455555555555553 34445666666666666665544 2566667777777777777766666666777777777777
Q ss_pred ccCCCCccc-chhhhCCCCCcEEecccCccCCcCCC
Q 041067 730 LAKTNIERI-PKSISQLLMLRYLLLSYSESLQSSPK 764 (770)
Q Consensus 730 L~~~~l~~l-p~~l~~l~~L~~L~l~~c~~L~~lP~ 764 (770)
+++|.++.+ |..+..+++|+.|++++|+ ++++|.
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~ 538 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKG 538 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEES
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCH
Confidence 777777744 6667777777777777776 666664
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=3.2e-21 Score=223.46 Aligned_cols=256 Identities=21% Similarity=0.203 Sum_probs=146.4
Q ss_pred eecCcccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCC-CCCC-CcccccccccCCCCcccc
Q 041067 494 IHLNPSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSL-PSNL-SAEKLMLLEVPDSDIEQL 571 (770)
Q Consensus 494 ~~~~~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~l~~~~i~~l 571 (770)
..+.+..|.++++|++|++++|.+.+..|..+..++ +|++|++++|.+..+ |..+ .+.+|++|++++|.+..+
T Consensus 46 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l 120 (606)
T 3t6q_A 46 PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH-----RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI 120 (606)
T ss_dssp SEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCT-----TCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCG
T ss_pred CcCChhHhccCccceEEECCCCccceeChhhccCcc-----ccCeeeCCCCcccccChhhhcccccccEeeccccCcccC
Confidence 344567788888888888888888776566666654 888888888887766 3444 367888888888888876
Q ss_pred -ccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCc--EEEecCCCCC-----
Q 041067 572 -WDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLT--KLNLSGCSKL----- 643 (770)
Q Consensus 572 -~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~--~L~L~~~~~l----- 643 (770)
+..+..+++|++|++++|..- .++.+ .+..+++|++|++++|......|..++.+++|+ .|++++|...
T Consensus 121 ~~~~~~~l~~L~~L~L~~n~l~--~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~ 197 (606)
T 3t6q_A 121 DFIPLHNQKTLESLYLGSNHIS--SIKLP-KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPG 197 (606)
T ss_dssp GGSCCTTCTTCCEEECCSSCCC--CCCCC-TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTT
T ss_pred CcchhccCCcccEEECCCCccc--ccCcc-cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChh
Confidence 456777888888888876532 22211 122266666666666653332233344444444 4444443311
Q ss_pred ---------------------------------------------------------------------CccCCc-cc--
Q 041067 644 ---------------------------------------------------------------------KRLPEI-SS-- 651 (770)
Q Consensus 644 ---------------------------------------------------------------------~~lp~~-~~-- 651 (770)
..+|.. +.
T Consensus 198 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l 277 (606)
T 3t6q_A 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF 277 (606)
T ss_dssp TTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTC
T ss_pred HhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccc
Confidence 111111 11
Q ss_pred cCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCc-ccCCCCCCcEEEc
Q 041067 652 GNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPE-CLAQFSSPIILNL 730 (770)
Q Consensus 652 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~L 730 (770)
++|++|++++|.+..+|.++..+++|++|++++|...+..|..+..+++|++|++++|...+.+|. .++.+++|+.|++
T Consensus 278 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 357 (606)
T 3t6q_A 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357 (606)
T ss_dssp TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence 456666666666666666666666666666666554443444455555555555555544434433 2445555555555
Q ss_pred cCCCCccc---chhhhCCCCCcEEecccCc
Q 041067 731 AKTNIERI---PKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 731 ~~~~l~~l---p~~l~~l~~L~~L~l~~c~ 757 (770)
++|.++.+ |..+..+++|+.|++++|+
T Consensus 358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 387 (606)
T 3t6q_A 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387 (606)
T ss_dssp CSSCCCEEEESTTTTTTCTTCCEEECCSCS
T ss_pred CCCccccccCcchhcccCCCCCEEECCCCc
Confidence 55554432 3334444444444444443
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=5e-22 Score=227.42 Aligned_cols=261 Identities=17% Similarity=0.181 Sum_probs=184.2
Q ss_pred ecCcccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCC-C-CcccccccccCCCCcccc-
Q 041067 495 HLNPSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSN-L-SAEKLMLLEVPDSDIEQL- 571 (770)
Q Consensus 495 ~~~~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~l~~~~i~~l- 571 (770)
.+.+..|.++++|++|++++|.+.+..|..+..++ +|++|++++|.+..+|.. + .+.+|++|++++|.+..+
T Consensus 40 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 114 (549)
T 2z81_A 40 YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG-----SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114 (549)
T ss_dssp EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT-----TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC
T ss_pred ccChhhhhcCCcccEEECCCCCcCccChhhccccc-----cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccc
Confidence 44567789999999999999988876556666654 899999999999888764 3 478999999999988854
Q ss_pred -ccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCC----------------------
Q 041067 572 -WDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFN---------------------- 628 (770)
Q Consensus 572 -~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~---------------------- 628 (770)
+..+..+++|++|++++|..+ ..+|. ..+.++++|++|++++|......|..++.
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~~~-~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 192 (549)
T 2z81_A 115 VTSLFPNLTNLQTLRIGNVETF-SEIRR-IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFA 192 (549)
T ss_dssp SSCSCTTCTTCCEEEEEESSSC-CEECT-TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHH
T ss_pred hhhhhhccCCccEEECCCCccc-cccCH-hhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhH
Confidence 567888999999999987655 44442 35677888888888888866666666554
Q ss_pred --CCCCcEEEecCCCCCCc----cCCc-----------------------------------------------------
Q 041067 629 --LEFLTKLNLSGCSKLKR----LPEI----------------------------------------------------- 649 (770)
Q Consensus 629 --l~~L~~L~L~~~~~l~~----lp~~----------------------------------------------------- 649 (770)
+++|++|++++|...+. .+..
T Consensus 193 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 272 (549)
T 2z81_A 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272 (549)
T ss_dssp HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCC
T ss_pred hhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccccc
Confidence 45566666666542220 0000
Q ss_pred ---------------------------------cc--cCccEEeccCcCccccCccc-ccCCCCCEEeccCCCCCCCCC-
Q 041067 650 ---------------------------------SS--GNISWLFLRETAIEELPSSI-ERLHRLGYLDLLDCKRLKSLP- 692 (770)
Q Consensus 650 ---------------------------------~~--~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L~L~~~~~~~~lp- 692 (770)
.. .+|+.|++++|.+..+|..+ ..+++|++|++++|...+.+|
T Consensus 273 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~ 352 (549)
T 2z81_A 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK 352 (549)
T ss_dssp TTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHH
T ss_pred chhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCcccccccc
Confidence 00 24555666666666666665 467888888888887665553
Q ss_pred --cccCCCCCCcEEEeecCCCCcccC---cccCCCCCCcEEEccCCCCcccchhhhCCCCCcEEecccCccCCcCCC
Q 041067 693 --RSLWMLKSLGVLNLSGCSNLQRLP---ECLAQFSSPIILNLAKTNIERIPKSISQLLMLRYLLLSYSESLQSSPK 764 (770)
Q Consensus 693 --~~l~~l~~L~~L~l~~~~~~~~lp---~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~L~~lP~ 764 (770)
..++.+++|++|++++|...+ +| ..++.+++|+.|++++|.++.+|..+..+++|+.|++++|. ++.+|.
T Consensus 353 ~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~ 427 (549)
T 2z81_A 353 NSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKT 427 (549)
T ss_dssp HHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSC-CSCCCT
T ss_pred chhhhhccccCcEEEccCCcccc-cccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCC-cccccc
Confidence 236677888888888765433 32 34677888888888888888888777778888888888876 666653
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=7.6e-21 Score=204.20 Aligned_cols=246 Identities=15% Similarity=0.186 Sum_probs=145.9
Q ss_pred ccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccccccccCcC
Q 041067 501 FTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDCVKHYRK 580 (770)
Q Consensus 501 ~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~ 580 (770)
+..+++|+.|++++|.+.+. |. +..+ .+|++|++.+|.+..+|....+.+|++|++++|.+..++. +..+++
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~-~~-~~~l-----~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~ 133 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDI-SP-LSNL-----VKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANLTK 133 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCC-GG-GTTC-----TTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTT
T ss_pred hhhcCCccEEEccCCccccc-hh-hhcC-----CcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccCCc
Confidence 55566666666666655542 21 2222 3566666666666665544445566666666666655544 555556
Q ss_pred CcEEccCcCcCccccCCC-------------------CCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCC
Q 041067 581 LNQIIPAACNKLIAKTPN-------------------PMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCS 641 (770)
Q Consensus 581 L~~L~L~~~~~l~~~~p~-------------------~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~ 641 (770)
|+.|++++|..+ ...+. ...+.++++|++|++++|. +..++. +..+++|++|++++|.
T Consensus 134 L~~L~l~~n~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 134 MYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQ 210 (347)
T ss_dssp CCEEECTTCTTC-CCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC
T ss_pred eeEEECCCCCCc-ccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCc-cccccc-ccCCCccceeecccCC
Confidence 666666555433 22221 1113344445555555544 333333 4445555555555544
Q ss_pred CCCccCCccc-cCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccC
Q 041067 642 KLKRLPEISS-GNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLA 720 (770)
Q Consensus 642 ~l~~lp~~~~-~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~ 720 (770)
+..++.... ++|++|++++|.+..+|. +..+++|++|++++|... .+ ..+..+++|++|++++|... .+| .+.
T Consensus 211 -l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~l~~n~l~-~~~-~~~ 284 (347)
T 4fmz_A 211 -ITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQIS-DI-NAVKDLTKLKMLNVGSNQIS-DIS-VLN 284 (347)
T ss_dssp -CCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CC-GGGTTCTTCCEEECCSSCCC-CCG-GGG
T ss_pred -CCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccC-CC-hhHhcCCCcCEEEccCCccC-CCh-hhc
Confidence 222222222 677777777777777766 777778888888877643 34 35777888888888886543 343 477
Q ss_pred CCCCCcEEEccCCCCc-ccchhhhCCCCCcEEecccCccCCcCCC
Q 041067 721 QFSSPIILNLAKTNIE-RIPKSISQLLMLRYLLLSYSESLQSSPK 764 (770)
Q Consensus 721 ~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~l~~c~~L~~lP~ 764 (770)
.+++|+.|++++|.++ ..|..+..+++|+.|++++|+ ++.+|.
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~ 328 (347)
T 4fmz_A 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP 328 (347)
T ss_dssp GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG
T ss_pred CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC
Confidence 7888888888888887 445667888888888888887 555543
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=3.6e-21 Score=223.07 Aligned_cols=247 Identities=16% Similarity=0.080 Sum_probs=206.1
Q ss_pred cccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCCcccccccccCCCCcccc---ccccc
Q 041067 500 TFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQL---WDCVK 576 (770)
Q Consensus 500 ~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l---~~~~~ 576 (770)
.+.++++|+.|++++|.+ +.+| .+ . +.+|+.|++.+|....-.....+.+|++|++++|.+..+ +..+.
T Consensus 302 ~l~~~~~L~~L~l~~n~l-~~lp-~~-~-----l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 373 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQL-KQFP-TL-D-----LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373 (606)
T ss_dssp CCCTTCCCSEEEEESCCC-SSCC-CC-C-----CSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHH
T ss_pred hccccccCCEEEcccccC-cccc-cC-C-----CCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhc
Confidence 566777888888888777 5455 33 3 357888888887433222333568899999999988876 67788
Q ss_pred cCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccC-ccCCCCCCCcEEEecCCCCCCccCCccc--cC
Q 041067 577 HYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLP-SRIFNLEFLTKLNLSGCSKLKRLPEISS--GN 653 (770)
Q Consensus 577 ~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~~~--~~ 653 (770)
.+++|+.|++++|.. ..+| ..+.++++|++|++++|......| ..+..+++|++|++++|......|.... ++
T Consensus 374 ~~~~L~~L~L~~n~l--~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 449 (606)
T 3vq2_A 374 GTNSLRHLDLSFNGA--IIMS--ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449 (606)
T ss_dssp CCSCCCEEECCSCSE--EEEC--CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred cCCcccEeECCCCcc--ccch--hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC
Confidence 999999999999863 4555 467889999999999998666555 5788999999999999987666776655 89
Q ss_pred ccEEeccCcCccc--cCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEcc
Q 041067 654 ISWLFLRETAIEE--LPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLA 731 (770)
Q Consensus 654 L~~L~l~~~~i~~--lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~ 731 (770)
|++|++++|.+.. +|..+..+++|+.|++++|...+..|..+.++++|++|++++|...+..|..++.+++|+.|+++
T Consensus 450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 529 (606)
T 3vq2_A 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529 (606)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECC
Confidence 9999999999985 78899999999999999999877778889999999999999998888889999999999999999
Q ss_pred CCCCcccchhhhCCC-CCcEEecccCcc
Q 041067 732 KTNIERIPKSISQLL-MLRYLLLSYSES 758 (770)
Q Consensus 732 ~~~l~~lp~~l~~l~-~L~~L~l~~c~~ 758 (770)
+|.++.+|..+..++ +|+.|++++|+-
T Consensus 530 ~N~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 530 FNRIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp TSCCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred CCcCcccCHhHhhhcccCcEEEccCCCc
Confidence 999999999999997 699999999983
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=8.6e-21 Score=207.28 Aligned_cols=248 Identities=18% Similarity=0.155 Sum_probs=197.9
Q ss_pred eecCcccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCC--CcccccccccCCCCcccc
Q 041067 494 IHLNPSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNL--SAEKLMLLEVPDSDIEQL 571 (770)
Q Consensus 494 ~~~~~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~l~~~~i~~l 571 (770)
..+.+..|.++++|+.|++++|.+.+..|..+..++ +|++|++.+|.+..+|... .+.+|++|++++|.+..+
T Consensus 82 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~ 156 (390)
T 3o6n_A 82 EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-----LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 156 (390)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC-----CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc
Confidence 344566889999999999999999886565566665 9999999999999999753 479999999999999887
Q ss_pred cc-ccccCcCCcEEccCcCcCccccCCCCCCCCCc----------------cceeEEeccCCCCCcccCccCCCCCCCcE
Q 041067 572 WD-CVKHYRKLNQIIPAACNKLIAKTPNPMLMPRL----------------NKLVLLNLRGSKSLKRLPSRIFNLEFLTK 634 (770)
Q Consensus 572 ~~-~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L----------------~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 634 (770)
+. .+..+++|+.|+++++.. ..++ +..++++ .+|+.|++++|. +..+|.. ..++|++
T Consensus 157 ~~~~~~~l~~L~~L~l~~n~l--~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~-l~~~~~~--~~~~L~~ 230 (390)
T 3o6n_A 157 EDDTFQATTSLQNLQLSSNRL--THVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVRGP--VNVELTI 230 (390)
T ss_dssp CTTTTSSCTTCCEEECCSSCC--SBCC-GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSC-CCEEECC--CCSSCCE
T ss_pred ChhhccCCCCCCEEECCCCcC--Cccc-cccccccceeecccccccccCCCCcceEEECCCCe-eeecccc--ccccccE
Confidence 54 478899999999998753 2222 1122221 345666666665 4444543 3578999
Q ss_pred EEecCCCCCCccCCccc-cCccEEeccCcCcccc-CcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCC
Q 041067 635 LNLSGCSKLKRLPEISS-GNISWLFLRETAIEEL-PSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNL 712 (770)
Q Consensus 635 L~L~~~~~l~~lp~~~~-~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~ 712 (770)
|++++|. +...+.... ++|++|++++|.+..+ |..+..+++|++|++++|.. ..+|..+..+++|++|++++|. +
T Consensus 231 L~l~~n~-l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~L~~n~-l 307 (390)
T 3o6n_A 231 LKLQHNN-LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNH-L 307 (390)
T ss_dssp EECCSSC-CCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC-CEEECSSSCCTTCCEEECCSSC-C
T ss_pred EECCCCC-CcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC-cccCcccCCCCCCCEEECCCCc-c
Confidence 9999987 444554444 8999999999999966 77899999999999999874 5678778899999999999985 4
Q ss_pred cccCcccCCCCCCcEEEccCCCCcccchhhhCCCCCcEEecccCc
Q 041067 713 QRLPECLAQFSSPIILNLAKTNIERIPKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 713 ~~lp~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~ 757 (770)
..+|..+..+++|+.|++++|.++.+| +..+++|+.|++++|+
T Consensus 308 ~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 308 LHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSC
T ss_pred eecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCC
Confidence 578888899999999999999999887 6789999999999998
No 31
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=9.9e-21 Score=201.80 Aligned_cols=241 Identities=16% Similarity=0.179 Sum_probs=191.8
Q ss_pred CCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCC-CCCCC-cccccccccCCCCccccccccccCcCCc
Q 041067 505 PKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSL-PSNLS-AEKLMLLEVPDSDIEQLWDCVKHYRKLN 582 (770)
Q Consensus 505 ~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~l-p~~~~-~~~L~~L~l~~~~i~~l~~~~~~l~~L~ 582 (770)
++|+.|++++|.+.+..+..+..++ +|++|++.+|.+..+ |..+. +.+|++|++++|.+..+|..+. ++|+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~ 124 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLK-----NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQ 124 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCT-----TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCC
T ss_pred CCCeEEECCCCcCCEeChhhhccCC-----CCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--cccc
Confidence 6789999999988875444555554 899999999998887 55554 6899999999999998887664 7899
Q ss_pred EEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCc--ccCccCCCCCCCcEEEecCCCCCCccCCccccCccEEecc
Q 041067 583 QIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLK--RLPSRIFNLEFLTKLNLSGCSKLKRLPEISSGNISWLFLR 660 (770)
Q Consensus 583 ~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~l~ 660 (770)
+|+++++.. ..++. ..+.++++|++|++++|.... ..|..+..+++|++|++++|. +..+|....++|++|+++
T Consensus 125 ~L~l~~n~l--~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~ 200 (330)
T 1xku_A 125 ELRVHENEI--TKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLD 200 (330)
T ss_dssp EEECCSSCC--CBBCH-HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECT
T ss_pred EEECCCCcc--cccCH-hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEECC
Confidence 999998753 22221 235678889999999887532 456678889999999999987 667777666889999999
Q ss_pred CcCcccc-CcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCcccc
Q 041067 661 ETAIEEL-PSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIERIP 739 (770)
Q Consensus 661 ~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp 739 (770)
+|.+..+ |..+..+++|++|++++|...+..|..+..+++|++|++++|. +..+|..+..+++|+.|++++|+++.+|
T Consensus 201 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp TSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCCccC
Confidence 9999876 5678899999999999988665555678889999999999975 4588888999999999999999998776
Q ss_pred hhh-h------CCCCCcEEecccCc
Q 041067 740 KSI-S------QLLMLRYLLLSYSE 757 (770)
Q Consensus 740 ~~l-~------~l~~L~~L~l~~c~ 757 (770)
... . ..+.|+.|++++|+
T Consensus 280 ~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 280 SNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp TTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred hhhcCCcccccccccccceEeecCc
Confidence 532 2 24788899999998
No 32
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=1.9e-20 Score=216.94 Aligned_cols=90 Identities=13% Similarity=0.205 Sum_probs=60.7
Q ss_pred cCcccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCC--CCCCCcccccccccCCCCccccc-
Q 041067 496 LNPSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSL--PSNLSAEKLMLLEVPDSDIEQLW- 572 (770)
Q Consensus 496 ~~~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~l--p~~~~~~~L~~L~l~~~~i~~l~- 572 (770)
+.+..|+++++|++|++++|.+.+..|..+..+ .+|++|++.+|.+..+ |..+.+.+|++|++++|.+..++
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQ-----KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTC-----TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred cChhhhcccccccEeeccccCcccCCcchhccC-----CcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence 345566777777777777776665333344433 4788888888888876 55666788888888888887663
Q ss_pred cccccCcCCc--EEccCcCc
Q 041067 573 DCVKHYRKLN--QIIPAACN 590 (770)
Q Consensus 573 ~~~~~l~~L~--~L~L~~~~ 590 (770)
..+..+++|+ .|+++++.
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCC
T ss_pred hhhhhhcccceeEEecCCCc
Confidence 3466666666 66666553
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=1.1e-21 Score=207.39 Aligned_cols=227 Identities=18% Similarity=0.239 Sum_probs=199.9
Q ss_pred CceeEEEEcCCCCC---CCCCCCC-cccccccccCC-CCcc-ccccccccCcCCcEEccCcCcCccccCCCCCCCCCccc
Q 041067 534 GEVKYLHWYGYPLK---SLPSNLS-AEKLMLLEVPD-SDIE-QLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNK 607 (770)
Q Consensus 534 ~~Lr~L~l~~~~l~---~lp~~~~-~~~L~~L~l~~-~~i~-~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~ 607 (770)
.+++.|++.++.+. .+|..+. +.+|++|++++ +.+. .+|..+..+++|++|+++++..- ..+|. .+.++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~--~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS-GAIPD--FLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE-EECCG--GGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC-CcCCH--HHhCCCC
Confidence 48999999999998 4787664 69999999994 7776 68889999999999999997643 45554 6788999
Q ss_pred eeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc--c-CccEEeccCcCcc-ccCcccccCCCCCEEecc
Q 041067 608 LVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS--G-NISWLFLRETAIE-ELPSSIERLHRLGYLDLL 683 (770)
Q Consensus 608 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~--~-~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~ 683 (770)
|++|++++|.....+|..++.+++|++|++++|.....+|.... . +|++|++++|.+. .+|..+..++ |++|+++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 99999999997778999999999999999999986668887766 4 8999999999998 7888999987 9999999
Q ss_pred CCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCc-ccchhhhCCCCCcEEecccCccCCcC
Q 041067 684 DCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIE-RIPKSISQLLMLRYLLLSYSESLQSS 762 (770)
Q Consensus 684 ~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~l~~c~~L~~l 762 (770)
+|...+..|..+..+++|+.|++++|...+.+|. +..+++|+.|++++|.++ .+|.++..+++|+.|++++|+--..+
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence 9998778888999999999999999887766665 889999999999999999 89999999999999999999855578
Q ss_pred CCC
Q 041067 763 PKP 765 (770)
Q Consensus 763 P~l 765 (770)
|..
T Consensus 285 p~~ 287 (313)
T 1ogq_A 285 PQG 287 (313)
T ss_dssp CCS
T ss_pred CCC
Confidence 765
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1.4e-20 Score=217.10 Aligned_cols=248 Identities=17% Similarity=0.136 Sum_probs=198.0
Q ss_pred eecCcccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCC--CcccccccccCCCCcccc
Q 041067 494 IHLNPSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNL--SAEKLMLLEVPDSDIEQL 571 (770)
Q Consensus 494 ~~~~~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~l~~~~i~~l 571 (770)
..+.+..|+++++|+.|++++|.+.+..|..+..++ +|++|++++|.+..+|... .+.+|++|++++|.+..+
T Consensus 88 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 162 (597)
T 3oja_B 88 EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-----LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 162 (597)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC-----CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC
Confidence 345566899999999999999999886665666665 9999999999999999764 479999999999999887
Q ss_pred cc-ccccCcCCcEEccCcCcCccccCCCCCCCCC----------------ccceeEEeccCCCCCcccCccCCCCCCCcE
Q 041067 572 WD-CVKHYRKLNQIIPAACNKLIAKTPNPMLMPR----------------LNKLVLLNLRGSKSLKRLPSRIFNLEFLTK 634 (770)
Q Consensus 572 ~~-~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~----------------L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 634 (770)
+. .+..+++|++|++++|.. ..++ +..+++ ..+|+.|++++|. +..+|..+ .++|++
T Consensus 163 ~~~~~~~l~~L~~L~L~~N~l--~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~-l~~~~~~~--~~~L~~ 236 (597)
T 3oja_B 163 EDDTFQATTSLQNLQLSSNRL--THVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVRGPV--NVELTI 236 (597)
T ss_dssp CTTTTTTCTTCCEEECTTSCC--SBCC-GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSC-CCEEECSC--CSCCCE
T ss_pred ChhhhhcCCcCcEEECcCCCC--CCcC-hhhhhhhhhhhcccCccccccCCchhheeeccCCc-cccccccc--CCCCCE
Confidence 65 588999999999998753 2222 111221 2345566666655 44444433 468999
Q ss_pred EEecCCCCCCccCCccc-cCccEEeccCcCcccc-CcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCC
Q 041067 635 LNLSGCSKLKRLPEISS-GNISWLFLRETAIEEL-PSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNL 712 (770)
Q Consensus 635 L~L~~~~~l~~lp~~~~-~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~ 712 (770)
|++++|.. ...+.... ++|++|++++|.+..+ |..+..+++|+.|+|++|.. ..+|..+..+++|+.|++++|..
T Consensus 237 L~L~~n~l-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~Ls~N~l- 313 (597)
T 3oja_B 237 LKLQHNNL-TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHL- 313 (597)
T ss_dssp EECCSSCC-CCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC-CEEECSSSCCTTCCEEECCSSCC-
T ss_pred EECCCCCC-CCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC-CCCCcccccCCCCcEEECCCCCC-
Confidence 99999974 44444333 8999999999999865 77899999999999999874 55788888899999999999765
Q ss_pred cccCcccCCCCCCcEEEccCCCCcccchhhhCCCCCcEEecccCc
Q 041067 713 QRLPECLAQFSSPIILNLAKTNIERIPKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 713 ~~lp~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~ 757 (770)
..+|..++.+++|+.|++++|.++.+| +..+++|+.|++++|+
T Consensus 314 ~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 314 LHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSC
T ss_pred CccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCC
Confidence 478888999999999999999999887 6788999999999998
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=5.3e-21 Score=217.34 Aligned_cols=125 Identities=15% Similarity=0.104 Sum_probs=94.6
Q ss_pred CCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCC-CCCC-CcccccccccCCCCccccccccccCcCCc
Q 041067 505 PKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSL-PSNL-SAEKLMLLEVPDSDIEQLWDCVKHYRKLN 582 (770)
Q Consensus 505 ~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~ 582 (770)
++|+.|++++|.+.+..|..+..++ +|++|++++|.+..+ |..+ .+.+|++|++++|.+..+|.. .+++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 93 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLS-----KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLK 93 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCT-----TCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred ccccEEECCCCcccccChhhccccc-----cccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence 8999999999999886555666665 999999999999988 4455 479999999999999999888 899999
Q ss_pred EEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCC--cEEEecCCC
Q 041067 583 QIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFL--TKLNLSGCS 641 (770)
Q Consensus 583 ~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L--~~L~L~~~~ 641 (770)
+|++++|.. ..++.+..+.++++|++|++++|.... ..+..+++| ++|++++|.
T Consensus 94 ~L~L~~N~l--~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 94 HLDLSFNAF--DALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp EEECCSSCC--SSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECT
T ss_pred EEeccCCcc--ccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccc
Confidence 999999864 333434467788888888888876432 123334444 555554443
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=2.2e-20 Score=199.23 Aligned_cols=240 Identities=18% Similarity=0.176 Sum_probs=167.5
Q ss_pred CCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCC-CCCCC-cccccccccCCCCccccccccccCcCCc
Q 041067 505 PKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSL-PSNLS-AEKLMLLEVPDSDIEQLWDCVKHYRKLN 582 (770)
Q Consensus 505 ~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~l-p~~~~-~~~L~~L~l~~~~i~~l~~~~~~l~~L~ 582 (770)
++|+.|++++|.+.+..|..+..++ +|++|++.+|.+..+ |..+. +.+|++|++++|.+..+|..+. ++|+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~ 126 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQ-----HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLV 126 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCT-----TCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCC-----CCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCC
Confidence 5677888887777664444555544 778888888777776 33443 5778888888887777776654 6788
Q ss_pred EEccCcCcCccccCCCCCCCCCccceeEEeccCCCCC--cccCccCCCCCCCcEEEecCCCCCCccCCccccCccEEecc
Q 041067 583 QIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSL--KRLPSRIFNLEFLTKLNLSGCSKLKRLPEISSGNISWLFLR 660 (770)
Q Consensus 583 ~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l--~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~l~ 660 (770)
+|+++++.. ..+|. ..+.++++|++|++++|... ...|..+..+ +|++|++++|. +..+|.....+|++|+++
T Consensus 127 ~L~l~~n~i--~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~ 201 (332)
T 2ft3_A 127 ELRIHDNRI--RKVPK-GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLPETLNELHLD 201 (332)
T ss_dssp EEECCSSCC--CCCCS-GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSCSSCSCCBCC
T ss_pred EEECCCCcc--CccCH-hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCccccCCCCEEECC
Confidence 888877543 23332 23566777888888877643 2445556566 78888888776 555776655778888888
Q ss_pred CcCccccC-cccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCcccc
Q 041067 661 ETAIEELP-SSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIERIP 739 (770)
Q Consensus 661 ~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp 739 (770)
+|.+..++ ..+..+++|++|++++|...+..|..+..+++|+.|++++|.. ..+|..+..+++|+.|++++|.++.+|
T Consensus 202 ~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 202 HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp SSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC-CBCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC-eecChhhhcCccCCEEECCCCCCCccC
Confidence 88887665 5677788888888888776555555677888888888887654 477877888888888888888887665
Q ss_pred hh-hhC------CCCCcEEecccCc
Q 041067 740 KS-ISQ------LLMLRYLLLSYSE 757 (770)
Q Consensus 740 ~~-l~~------l~~L~~L~l~~c~ 757 (770)
.. +.. .++|+.|++++|+
T Consensus 281 ~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 281 VNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp TTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred hhHccccccccccccccceEeecCc
Confidence 42 222 3567888888887
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=1.9e-20 Score=224.89 Aligned_cols=264 Identities=18% Similarity=0.114 Sum_probs=184.5
Q ss_pred ecCcccccCCCCCceEEEecCCCCCCc-cCCccCCCCCCCCceeEEEEcCCCCCCC-CCCCC-cccccccccCCCCccc-
Q 041067 495 HLNPSTFTKMPKLRFLKFYSSSFNGEN-KCKISYLQDPGFGEVKYLHWYGYPLKSL-PSNLS-AEKLMLLEVPDSDIEQ- 570 (770)
Q Consensus 495 ~~~~~~~~~l~~Lr~L~l~~~~l~~~~-p~~l~~l~~~~l~~Lr~L~l~~~~l~~l-p~~~~-~~~L~~L~l~~~~i~~- 570 (770)
.+.+..|.++++|++|++++|...+.+ |..+..++ +|++|++++|.+..+ |..|. +.+|++|++++|.+..
T Consensus 38 ~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~-----~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 112 (844)
T 3j0a_A 38 TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP-----NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112 (844)
T ss_dssp EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCT-----TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSC
T ss_pred ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCC-----CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcc
Confidence 344566778888888888877665544 44555554 788888888877766 55553 5778888888887764
Q ss_pred cccc--cccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCc------------------------
Q 041067 571 LWDC--VKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPS------------------------ 624 (770)
Q Consensus 571 l~~~--~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~------------------------ 624 (770)
++.. +..+++|++|++++|..- ..+....+.++++|++|+|++|......|.
T Consensus 113 ~~~~~~~~~L~~L~~L~Ls~N~l~--~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~ 190 (844)
T 3j0a_A 113 VLKDGYFRNLKALTRLDLSKNQIR--SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190 (844)
T ss_dssp CSTTCCCSSCSSCCEEEEESCCCC--CCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCC
T ss_pred cccCccccccCCCCEEECCCCccc--ccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccc
Confidence 3433 677778888888776532 332223466777777777777664333332
Q ss_pred --cCCCCCC------CcEEEecCCCCCCccCCcc----------------------------------------ccCccE
Q 041067 625 --RIFNLEF------LTKLNLSGCSKLKRLPEIS----------------------------------------SGNISW 656 (770)
Q Consensus 625 --~i~~l~~------L~~L~L~~~~~l~~lp~~~----------------------------------------~~~L~~ 656 (770)
.++.+.+ |++|++++|......|... ..+|+.
T Consensus 191 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~ 270 (844)
T 3j0a_A 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270 (844)
T ss_dssp CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCE
T ss_pred ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccE
Confidence 2333332 7777777764322221110 036788
Q ss_pred EeccCcCcccc-CcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCC
Q 041067 657 LFLRETAIEEL-PSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNI 735 (770)
Q Consensus 657 L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l 735 (770)
|++++|.+..+ |..+..+++|+.|++++|...+..|..+..+++|++|++++|...+..|..+..+++|+.|++++|.+
T Consensus 271 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 350 (844)
T 3j0a_A 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350 (844)
T ss_dssp EECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCC
T ss_pred EECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCC
Confidence 88888887755 45678889999999999887766777888999999999999887777788899999999999999999
Q ss_pred cccch-hhhCCCCCcEEecccCccCCcCCCCC
Q 041067 736 ERIPK-SISQLLMLRYLLLSYSESLQSSPKPP 766 (770)
Q Consensus 736 ~~lp~-~l~~l~~L~~L~l~~c~~L~~lP~lp 766 (770)
+.++. .+..+++|+.|++++|. ++.+|.+|
T Consensus 351 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~ 381 (844)
T 3j0a_A 351 AIIQDQTFKFLEKLQTLDLRDNA-LTTIHFIP 381 (844)
T ss_dssp CCCCSSCSCSCCCCCEEEEETCC-SCCCSSCC
T ss_pred CccChhhhcCCCCCCEEECCCCC-CCcccCCC
Confidence 86664 57889999999999986 77777643
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=3.3e-20 Score=199.23 Aligned_cols=238 Identities=14% Similarity=0.200 Sum_probs=186.3
Q ss_pred cccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCC-CCCCCCCCCcccccccccCCCCccccccccccC
Q 041067 500 TFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYP-LKSLPSNLSAEKLMLLEVPDSDIEQLWDCVKHY 578 (770)
Q Consensus 500 ~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~-l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l 578 (770)
.|.++++|+.|++++|.+.+. |. +.. +.+|+.|++.+|+ ...++....+.+|++|+++++.+..++. +..+
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~~-~~-~~~-----l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l 176 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISDI-SP-LAN-----LTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANL 176 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCCC-GG-GTT-----CTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGC
T ss_pred HHcCCCcCCEEECcCCcccCc-hh-hcc-----CCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccC
Confidence 466677777777777666542 21 222 3477777777774 3344443446788888888888777665 7788
Q ss_pred cCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc-cCccEE
Q 041067 579 RKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS-GNISWL 657 (770)
Q Consensus 579 ~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L 657 (770)
++|+.|++++|.. ..++ .+..+++|++|++++|. +..++. +..+++|++|++++|. +..+|.... ++|++|
T Consensus 177 ~~L~~L~l~~n~l--~~~~---~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L 248 (347)
T 4fmz_A 177 TDLYSLSLNYNQI--EDIS---PLASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNNK-ITDLSPLANLSQLTWL 248 (347)
T ss_dssp TTCSEEECTTSCC--CCCG---GGGGCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEE
T ss_pred CCCCEEEccCCcc--cccc---cccCCCccceeecccCC-CCCCch-hhcCCcCCEEEccCCc-cCCCcchhcCCCCCEE
Confidence 8999999988753 2333 36788999999999997 444554 7789999999999987 555655433 899999
Q ss_pred eccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCcc
Q 041067 658 FLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIER 737 (770)
Q Consensus 658 ~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~ 737 (770)
++++|.+..++ .+..+++|++|++++|.. ..+| .+..+++|+.|++++|...+..|..++.+++|+.|++++|+++.
T Consensus 249 ~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l-~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 249 EIGTNQISDIN-AVKDLTKLKMLNVGSNQI-SDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp ECCSSCCCCCG-GGTTCTTCCEEECCSSCC-CCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred ECCCCccCCCh-hHhcCCCcCEEEccCCcc-CCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 99999999885 688999999999999975 4454 58899999999999998888888889999999999999999998
Q ss_pred cchhhhCCCCCcEEecccCc
Q 041067 738 IPKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 738 lp~~l~~l~~L~~L~l~~c~ 757 (770)
++. +..+++|+.|++++|+
T Consensus 326 ~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 326 IRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CGG-GGGCTTCSEESSSCC-
T ss_pred ccC-hhhhhccceeehhhhc
Confidence 876 8899999999999997
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=3.5e-20 Score=208.21 Aligned_cols=250 Identities=18% Similarity=0.183 Sum_probs=187.3
Q ss_pred CCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCC-CCCCC-cccccccccCCCCccccccc-cccCcCC
Q 041067 505 PKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSL-PSNLS-AEKLMLLEVPDSDIEQLWDC-VKHYRKL 581 (770)
Q Consensus 505 ~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~l-p~~~~-~~~L~~L~l~~~~i~~l~~~-~~~l~~L 581 (770)
++++.|++++|.+.+..|..+..++ +|++|++.+|.+..+ |..|. +.+|++|++++|.+..++.. +..+++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFP-----HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred CCCcEEECCCCccceECHhHccCCC-----CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence 5899999999999886566666654 999999999999987 55554 79999999999999999875 6899999
Q ss_pred cEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCc-cc--cCccEEe
Q 041067 582 NQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEI-SS--GNISWLF 658 (770)
Q Consensus 582 ~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~-~~--~~L~~L~ 658 (770)
++|+++++... ...| ..+.++++|++|++++|......|..+..+++|++|++++|. +..+|.. +. ++|+.|+
T Consensus 107 ~~L~Ls~n~i~-~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 107 TKLDISENKIV-ILLD--YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLR 182 (477)
T ss_dssp CEEECTTSCCC-EECT--TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEE
T ss_pred CEEECCCCccc-cCCh--hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEe
Confidence 99999997643 3333 367889999999999998666667788999999999999986 5555542 22 7899999
Q ss_pred ccCcCccccCc-ccccCCCCCEEeccCCCCCCCCCcc------------------------cCCCCCCcEEEeecCCCCc
Q 041067 659 LRETAIEELPS-SIERLHRLGYLDLLDCKRLKSLPRS------------------------LWMLKSLGVLNLSGCSNLQ 713 (770)
Q Consensus 659 l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~------------------------l~~l~~L~~L~l~~~~~~~ 713 (770)
+++|.+..++. .+..+++|++|++++|...+.+|.. +.++++|+.|++++|...+
T Consensus 183 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 262 (477)
T 2id5_A 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262 (477)
T ss_dssp EESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc
Confidence 99888886654 5677777777777776655544443 4555566666666655444
Q ss_pred ccCcccCCCCCCcEEEccCCCCccc-chhhhCCCCCcEEecccCccCCcCCC
Q 041067 714 RLPECLAQFSSPIILNLAKTNIERI-PKSISQLLMLRYLLLSYSESLQSSPK 764 (770)
Q Consensus 714 ~lp~~l~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~c~~L~~lP~ 764 (770)
..+..+..+++|+.|+|++|.++.+ |..+..+++|+.|++++|. ++.+|.
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 313 (477)
T 2id5_A 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEE 313 (477)
T ss_dssp ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCG
T ss_pred cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeCH
Confidence 4445566667777777777777644 5566777788888888875 666653
No 40
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=1.3e-20 Score=209.30 Aligned_cols=245 Identities=19% Similarity=0.196 Sum_probs=151.8
Q ss_pred cccccCCCCCceEEEecCCCCCCccCCccCCCCCC--------CCceeEEEEcCCCCCCCCCCCCcccccccccCCCCcc
Q 041067 498 PSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPG--------FGEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIE 569 (770)
Q Consensus 498 ~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~--------l~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~ 569 (770)
|..++++++|+.|++++|.+.+.+|.++..+.... ..+++.|++.++.+..+|.. +.+|++|++++|.+.
T Consensus 27 P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~ 104 (454)
T 1jl5_A 27 PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL--PPHLESLVASCNSLT 104 (454)
T ss_dssp -------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCS
T ss_pred ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC--cCCCCEEEccCCcCC
Confidence 56688888888888888888877777776654100 01247888888888887763 467888888888887
Q ss_pred ccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCc
Q 041067 570 QLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEI 649 (770)
Q Consensus 570 ~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 649 (770)
.+|.. +++|+.|+++++. + ..+|.. .++|++|++++|. +..+| .++.+++|++|++++|. ++.+|..
T Consensus 105 ~lp~~---~~~L~~L~l~~n~-l-~~l~~~-----~~~L~~L~L~~n~-l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~ 171 (454)
T 1jl5_A 105 ELPEL---PQSLKSLLVDNNN-L-KALSDL-----PPLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVDNNS-LKKLPDL 171 (454)
T ss_dssp SCCCC---CTTCCEEECCSSC-C-SCCCSC-----CTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSC-CSCCCCC
T ss_pred ccccc---cCCCcEEECCCCc-c-CcccCC-----CCCCCEEECcCCC-CCCCc-ccCCCCCCCEEECCCCc-CcccCCC
Confidence 77653 3677788877753 2 233321 1567778887776 44577 47777778888887775 4456654
Q ss_pred cccCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEE
Q 041067 650 SSGNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILN 729 (770)
Q Consensus 650 ~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~ 729 (770)
. .+|++|++++|.+..+| .++.+++|++|++++|... .+|.. .++|++|++++|... .+|. ++.+++|+.|+
T Consensus 172 ~-~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~ 243 (454)
T 1jl5_A 172 P-PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLK-KLPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIY 243 (454)
T ss_dssp C-TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEE
T ss_pred c-ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCC-cCCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEE
Confidence 3 37777777777777776 5777777777777776643 34432 246666666665433 5553 66666666666
Q ss_pred ccCCCCcccchhhhCCCCCcEEecccCccCCcCCCCCCCC
Q 041067 730 LAKTNIERIPKSISQLLMLRYLLLSYSESLQSSPKPPFRA 769 (770)
Q Consensus 730 L~~~~l~~lp~~l~~l~~L~~L~l~~c~~L~~lP~lp~~l 769 (770)
+++|.++.+|.. +++|+.|++++|. ++.+|..|++|
T Consensus 244 l~~N~l~~l~~~---~~~L~~L~l~~N~-l~~l~~~~~~L 279 (454)
T 1jl5_A 244 ADNNLLKTLPDL---PPSLEALNVRDNY-LTDLPELPQSL 279 (454)
T ss_dssp CCSSCCSSCCSC---CTTCCEEECCSSC-CSCCCCCCTTC
T ss_pred CCCCcCCccccc---ccccCEEECCCCc-ccccCcccCcC
Confidence 666666655542 2445555555553 44444444433
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=6e-20 Score=204.14 Aligned_cols=235 Identities=17% Similarity=0.110 Sum_probs=171.8
Q ss_pred cccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccccccccCc
Q 041067 500 TFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDCVKHYR 579 (770)
Q Consensus 500 ~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~ 579 (770)
.+.++++|+.|++++|.+.+. | +. .+.+|++|++++|.+..+| ...+.+|++|++++|.+..++ +..++
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~-~--~~-----~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~--~~~l~ 127 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTL-D--LS-----QNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD--VSQNP 127 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCC-C--CT-----TCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC--CTTCT
T ss_pred hhcccCCCCEEEccCCcCCeE-c--cc-----cCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec--CCCCC
Confidence 577888888888888887762 2 33 3358888888888888876 335688888888888888875 77888
Q ss_pred CCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccccCccEEec
Q 041067 580 KLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISSGNISWLFL 659 (770)
Q Consensus 580 ~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~l 659 (770)
+|++|++++|.. ..+ .+.++++|++|++++|..+..++ ++.+++|++|++++|. ++.+|-...++|+.|++
T Consensus 128 ~L~~L~l~~N~l--~~l----~l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L~l 198 (457)
T 3bz5_A 128 LLTYLNCARNTL--TEI----DVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK-ITELDVSQNKLLNRLNC 198 (457)
T ss_dssp TCCEEECTTSCC--SCC----CCTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSC-CCCCCCTTCTTCCEEEC
T ss_pred cCCEEECCCCcc--cee----ccccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCc-cceeccccCCCCCEEEC
Confidence 888888888653 233 25677888888888887677663 6788888888888876 55566222278888999
Q ss_pred cCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCc---
Q 041067 660 RETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIE--- 736 (770)
Q Consensus 660 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~--- 736 (770)
++|.+..++ ++.+++|++|++++|...+ +| ++.+++|+.|++++|...+. | ++.+++|+.|++++|+++
T Consensus 199 ~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~-~--~~~l~~L~~L~l~~n~L~~L~ 270 (457)
T 3bz5_A 199 DTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL-D--VSTLSKLTTLHCIQTDLLEID 270 (457)
T ss_dssp CSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECTTCCCSCCC
T ss_pred cCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc-C--HHHCCCCCEEeccCCCCCEEE
Confidence 888888874 7888889999998887544 66 78888999999988765543 3 345555555555544443
Q ss_pred --------ccchhhhCCCCCcEEecccCccCCcCCC
Q 041067 737 --------RIPKSISQLLMLRYLLLSYSESLQSSPK 764 (770)
Q Consensus 737 --------~lp~~l~~l~~L~~L~l~~c~~L~~lP~ 764 (770)
.+| .+.+++|+.|++++|+.++.+|.
T Consensus 271 l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 271 LTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp CTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred CCCCccCCccc--ccccccCCEEECCCCcccceecc
Confidence 233 35678888888888877766664
No 42
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=3.3e-20 Score=212.80 Aligned_cols=126 Identities=20% Similarity=0.239 Sum_probs=98.9
Q ss_pred CCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCC-CCCC-cccccccccCCCCccccccccccCcCCc
Q 041067 505 PKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLP-SNLS-AEKLMLLEVPDSDIEQLWDCVKHYRKLN 582 (770)
Q Consensus 505 ~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp-~~~~-~~~L~~L~l~~~~i~~l~~~~~~l~~L~ 582 (770)
++|+.|++++|.+.+..|..+..++ +|++|++++|.+..++ ..|. +.+|++|++++|.+..+|.. .+++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 124 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLS-----ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLR 124 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCT-----TCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCS
T ss_pred CCcCEEECCCCCccccChhhhccCC-----CccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCC
Confidence 7899999999999986666776665 9999999999999884 4554 79999999999999999988 899999
Q ss_pred EEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCC--cEEEecCCCC
Q 041067 583 QIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFL--TKLNLSGCSK 642 (770)
Q Consensus 583 ~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L--~~L~L~~~~~ 642 (770)
+|++++|.. ..+|.+..+.++++|++|++++|.... ..+..+++| ++|++++|..
T Consensus 125 ~L~Ls~N~l--~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 125 HLDLSFNDF--DVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp EEECCSSCC--SBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSC
T ss_pred EEECCCCCc--cccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccc
Confidence 999999764 455555578889999999999887433 123334444 6666665543
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=7.2e-20 Score=203.99 Aligned_cols=219 Identities=22% Similarity=0.253 Sum_probs=128.6
Q ss_pred CceeEEEEcCCCCCCCCC-CC-CcccccccccCCCCccccc-cccccCcCCcEEccCcCcCccccCCCCCCCCCccceeE
Q 041067 534 GEVKYLHWYGYPLKSLPS-NL-SAEKLMLLEVPDSDIEQLW-DCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVL 610 (770)
Q Consensus 534 ~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~ 610 (770)
.++++|++.+|.+..++. .| .+.+|++|++++|.+..++ ..+..+++|++|+|+++. + ..+|. ..+.++++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l-~~~~~-~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-L-TVIPS-GAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-C-SBCCT-TTSSSCTTCCE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-C-CccCh-hhhcccCCCCE
Confidence 355555555555555432 22 2456666666666665554 345556666666666643 2 23332 23455666666
Q ss_pred EeccCCCCCcccC-ccCCCCCCCcEEEecCCCCCCccCCccc---cCccEEeccCcCccccCcccccCCCCCEEeccCCC
Q 041067 611 LNLRGSKSLKRLP-SRIFNLEFLTKLNLSGCSKLKRLPEISS---GNISWLFLRETAIEELPSSIERLHRLGYLDLLDCK 686 (770)
Q Consensus 611 L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~~~---~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~ 686 (770)
|+|++|. +..+| ..+.++++|++|++++|..++.+|.... .+|++|++++|.+..+| .+..+++|+.|++++|.
T Consensus 152 L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 152 LWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNH 229 (452)
T ss_dssp EECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSC
T ss_pred EECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCc
Confidence 6666665 33333 2455666666666666666666654322 56666666666666665 35666666666666666
Q ss_pred CCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCcccchh-hhCCCCCcEEecccCc
Q 041067 687 RLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIERIPKS-ISQLLMLRYLLLSYSE 757 (770)
Q Consensus 687 ~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~c~ 757 (770)
..+..|..+.++++|+.|++++|...+..|..+..+++|+.|+|++|.++.+|.. +..+++|+.|++++|+
T Consensus 230 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 5555556666666666666666665555566666666666666666666655543 4556666666666665
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=2.6e-20 Score=196.27 Aligned_cols=224 Identities=19% Similarity=0.207 Sum_probs=164.9
Q ss_pred CCCceEEEecCCCCCCccCC-ccCCCCCCCCceeEEEEcCCCCCCC---C-CCCCcccccccccCCCCccccccccccCc
Q 041067 505 PKLRFLKFYSSSFNGENKCK-ISYLQDPGFGEVKYLHWYGYPLKSL---P-SNLSAEKLMLLEVPDSDIEQLWDCVKHYR 579 (770)
Q Consensus 505 ~~Lr~L~l~~~~l~~~~p~~-l~~l~~~~l~~Lr~L~l~~~~l~~l---p-~~~~~~~L~~L~l~~~~i~~l~~~~~~l~ 579 (770)
++|+.|++++|.+.. +|.. +..+ .+|++|++.+|.+..+ | ....+.+|++|++++|.+..++..+..++
T Consensus 28 ~~l~~L~L~~n~l~~-i~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~ 101 (306)
T 2z66_A 28 SSATRLELESNKLQS-LPHGVFDKL-----TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE 101 (306)
T ss_dssp TTCCEEECCSSCCCC-CCTTTTTTC-----TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCT
T ss_pred CCCCEEECCCCccCc-cCHhHhhcc-----ccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCC
Confidence 578888888888774 3332 3444 4888888888887755 2 22346788888888888888888888888
Q ss_pred CCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCC-ccCCccc--cCccE
Q 041067 580 KLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLK-RLPEISS--GNISW 656 (770)
Q Consensus 580 ~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~-~lp~~~~--~~L~~ 656 (770)
+|++|+++++.. ..++....+.++++|++|++++|......|..+..+++|++|++++|.... .+|.... ++|++
T Consensus 102 ~L~~L~l~~n~l--~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 102 QLEHLDFQHSNL--KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179 (306)
T ss_dssp TCCEEECTTSEE--ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred CCCEEECCCCcc--cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence 888888888653 455544567778888888888887655666667788888888888876443 3565544 77888
Q ss_pred EeccCcCcccc-CcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCC-CCcEEEccCCC
Q 041067 657 LFLRETAIEEL-PSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFS-SPIILNLAKTN 734 (770)
Q Consensus 657 L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~-~L~~L~L~~~~ 734 (770)
|++++|.+..+ |..+..+++|++|++++|...+..+..+..+++|+.|++++|...+..|..+..++ +|+.|++++|+
T Consensus 180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 88888888866 55677888888888888775544444677788888888888877777777777774 78888888888
Q ss_pred Cc
Q 041067 735 IE 736 (770)
Q Consensus 735 l~ 736 (770)
++
T Consensus 260 ~~ 261 (306)
T 2z66_A 260 FA 261 (306)
T ss_dssp EE
T ss_pred ee
Confidence 76
No 45
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=6.2e-20 Score=205.37 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=52.1
Q ss_pred cCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEcc
Q 041067 652 GNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLA 731 (770)
Q Consensus 652 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~ 731 (770)
++|++|++++|.+..+|. +..+++|+.|++++|...+ ++. +..+++|+.|++++|...+..| ++.+++|+.|+++
T Consensus 265 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 265 TKLTELKLGANQISNISP-LAGLTALTNLELNENQLED-ISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 339 (466)
T ss_dssp TTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECC
T ss_pred CCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccC-chh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECC
Confidence 444445554444444443 4445555555555544322 222 4455555555555554433333 4555666666666
Q ss_pred CCCCcccchhhhCCCCCcEEecccCc
Q 041067 732 KTNIERIPKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 732 ~~~l~~lp~~l~~l~~L~~L~l~~c~ 757 (770)
+|.++.++ .+..+++|+.|++++|+
T Consensus 340 ~n~l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 340 NNKVSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp SSCCCCCG-GGTTCTTCCEEECCSSC
T ss_pred CCccCCch-hhccCCCCCEEeCCCCc
Confidence 66665553 45566666666666665
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=9.9e-20 Score=202.13 Aligned_cols=219 Identities=21% Similarity=0.251 Sum_probs=151.2
Q ss_pred CceeEEEEcCCCCCCCCC-CC-CcccccccccCCCCccccc-cccccCcCCcEEccCcCcCccccCCCCCCCCCccceeE
Q 041067 534 GEVKYLHWYGYPLKSLPS-NL-SAEKLMLLEVPDSDIEQLW-DCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVL 610 (770)
Q Consensus 534 ~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~ 610 (770)
.+++.|++.+|.+..++. .| .+.+|++|++++|.+..++ ..+..+++|++|+|+++. + ..+|. ..+.++++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l-~~~~~-~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-L-TTIPN-GAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-C-SSCCT-TTSCSCSSCCE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-C-CeeCH-hHhhccccCce
Confidence 466667777776666653 33 3567777777777777665 346677777777777753 3 33332 24566777777
Q ss_pred EeccCCCCCcccC-ccCCCCCCCcEEEecCCCCCCccCCccc---cCccEEeccCcCccccCcccccCCCCCEEeccCCC
Q 041067 611 LNLRGSKSLKRLP-SRIFNLEFLTKLNLSGCSKLKRLPEISS---GNISWLFLRETAIEELPSSIERLHRLGYLDLLDCK 686 (770)
Q Consensus 611 L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~~~---~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~ 686 (770)
|+|++|. +..+| ..+..+++|++|++++|..+..+|.... ++|++|++++|.+..+| .+..+++|+.|++++|.
T Consensus 141 L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 141 LWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNH 218 (440)
T ss_dssp EECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSC
T ss_pred eeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCc
Confidence 7777776 33443 3566777777777777777777665322 67777777777777777 36777778888888777
Q ss_pred CCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCcccchh-hhCCCCCcEEecccCc
Q 041067 687 RLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIERIPKS-ISQLLMLRYLLLSYSE 757 (770)
Q Consensus 687 ~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~c~ 757 (770)
..+..|..+.++++|+.|++++|...+..|..+..+++|+.|+|++|.++.+|.. +..+++|+.|++++|+
T Consensus 219 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 6555566777778888888887776666666777778888888888877766643 4667778888887776
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=1e-19 Score=189.57 Aligned_cols=200 Identities=20% Similarity=0.240 Sum_probs=91.2
Q ss_pred CceeEEEEcCCCCCCCCC-CC-CcccccccccCCCCcccc-ccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeE
Q 041067 534 GEVKYLHWYGYPLKSLPS-NL-SAEKLMLLEVPDSDIEQL-WDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVL 610 (770)
Q Consensus 534 ~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~ 610 (770)
.+|+.|++.++.+..+|. .+ .+.+|++|++++|.+..+ +..+..+++|++|+++++..+ ..++ +..+.++++|++
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l-~~~~-~~~~~~l~~L~~ 109 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL-RSVD-PATFHGLGRLHT 109 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC-CCCC-TTTTTTCTTCCE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc-cccC-HHHhcCCcCCCE
Confidence 355555555555555443 12 234555555555555444 334444555555555544322 2221 123444445555
Q ss_pred EeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccccCccEEeccCcCccccCcc-cccCCCCCEEeccCCCCCC
Q 041067 611 LNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISSGNISWLFLRETAIEELPSS-IERLHRLGYLDLLDCKRLK 689 (770)
Q Consensus 611 L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~ 689 (770)
|++++|......|..+..+++|++|++++ |.+..+|.. +..+++|++|++++|...+
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----------------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQD----------------------NALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCS----------------------SCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCC----------------------CcccccCHhHhccCCCccEEECCCCcccc
Confidence 55555443333333444455555555555 444444432 4444455555555444222
Q ss_pred CCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCcccch-hhhCCCCCcEEecccCc
Q 041067 690 SLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIERIPK-SISQLLMLRYLLLSYSE 757 (770)
Q Consensus 690 ~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~c~ 757 (770)
..+..+..+++|++|++++|...+..|..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|+
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 112234444555555555544444444444555555555555555544442 24444555555555444
No 48
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=1.8e-19 Score=200.31 Aligned_cols=239 Identities=17% Similarity=0.195 Sum_probs=149.7
Q ss_pred ccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccccccccCcC
Q 041067 501 FTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDCVKHYRK 580 (770)
Q Consensus 501 ~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~ 580 (770)
++++++|+.|++++|.+.+. | +.. +.+|++|++++|.+..+| ...+.+|++|++++|.+..++ +..+++
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~-~--~~~-----l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~ 149 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNL-D--VTP-----LTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQ 149 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCC-C--CTT-----CTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTT
T ss_pred cccCCCCCEEECcCCCCcee-e--cCC-----CCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCc
Confidence 67777888888888777662 2 333 347778888877777775 334677777777777777663 566677
Q ss_pred CcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccccCccEEecc
Q 041067 581 LNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISSGNISWLFLR 660 (770)
Q Consensus 581 L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~l~ 660 (770)
|+.|++++|..+ ..+ .+..+++|++|++++|. +..+| ++.+++|++|++++|. +..++-...++|++|+++
T Consensus 150 L~~L~l~~n~~~-~~~----~~~~l~~L~~L~ls~n~-l~~l~--l~~l~~L~~L~l~~N~-l~~~~l~~l~~L~~L~Ls 220 (457)
T 3bz5_A 150 LTELDCHLNKKI-TKL----DVTPQTQLTTLDCSFNK-ITELD--VSQNKLLNRLNCDTNN-ITKLDLNQNIQLTFLDCS 220 (457)
T ss_dssp CCEEECTTCSCC-CCC----CCTTCTTCCEEECCSSC-CCCCC--CTTCTTCCEEECCSSC-CSCCCCTTCTTCSEEECC
T ss_pred CCEEECCCCCcc-ccc----ccccCCcCCEEECCCCc-cceec--cccCCCCCEEECcCCc-CCeeccccCCCCCEEECc
Confidence 777777776443 322 24455666666666655 33344 4455555555555544 222221111444455555
Q ss_pred CcCccccCcccccCCCCCEEeccCC-------------------------------CCCCCCCcccCCCCCCcEEEeecC
Q 041067 661 ETAIEELPSSIERLHRLGYLDLLDC-------------------------------KRLKSLPRSLWMLKSLGVLNLSGC 709 (770)
Q Consensus 661 ~~~i~~lp~~i~~l~~L~~L~L~~~-------------------------------~~~~~lp~~l~~l~~L~~L~l~~~ 709 (770)
+|.+..+| +..+++|++|++++| ...+.+| ++.+++|+.|++++|
T Consensus 221 ~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 221 SNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHN 296 (457)
T ss_dssp SSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTC
T ss_pred CCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCC
Confidence 54444444 444444444444444 3333343 345677888888888
Q ss_pred CCCcccCc--------ccCCCCCCcEEEccCCCCcccchhhhCCCCCcEEecccCccCCcCCCCC
Q 041067 710 SNLQRLPE--------CLAQFSSPIILNLAKTNIERIPKSISQLLMLRYLLLSYSESLQSSPKPP 766 (770)
Q Consensus 710 ~~~~~lp~--------~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~L~~lP~lp 766 (770)
...+.+|. .++.+++|+.|++++|.++.++ +..+++|+.|++++|+ ++.+|.++
T Consensus 297 ~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~-l~~l~~L~ 358 (457)
T 3bz5_A 297 TQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAH-IQDFSSVG 358 (457)
T ss_dssp TTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSC-CCBCTTGG
T ss_pred cccceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCC-CCCccccc
Confidence 77666654 2566789999999999999875 8899999999999987 77666543
No 49
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=6.8e-20 Score=220.04 Aligned_cols=262 Identities=16% Similarity=0.139 Sum_probs=185.4
Q ss_pred CcccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCC-CCCC--C-CcccccccccCCCCccccc
Q 041067 497 NPSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKS-LPSN--L-SAEKLMLLEVPDSDIEQLW 572 (770)
Q Consensus 497 ~~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~-lp~~--~-~~~~L~~L~l~~~~i~~l~ 572 (770)
.+.+|.++++|++|++++|.+.+..|..+..++ +|++|++++|.+.. +|.. + .+.+|++|++++|.+..++
T Consensus 65 ~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~ 139 (844)
T 3j0a_A 65 DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF-----HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139 (844)
T ss_dssp CTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS-----SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC
T ss_pred CHHHhcCCCCCCEEECCCCcCcccCHhHccCCc-----ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc
Confidence 355667777777777777766665555555554 66666666666654 3332 2 3566666666666666542
Q ss_pred --cccccCcCCcEEccCcCcCccccCC------------------------CCCCCCCcc------ceeEEeccCCCCCc
Q 041067 573 --DCVKHYRKLNQIIPAACNKLIAKTP------------------------NPMLMPRLN------KLVLLNLRGSKSLK 620 (770)
Q Consensus 573 --~~~~~l~~L~~L~L~~~~~l~~~~p------------------------~~~~~~~L~------~L~~L~L~~~~~l~ 620 (770)
..+.++++|++|+++++..- ...| .+..+.++. +|++|++++|....
T Consensus 140 ~~~~~~~L~~L~~L~Ls~N~i~-~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 218 (844)
T 3j0a_A 140 LHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218 (844)
T ss_dssp CCGGGGTCSSCCEEEEESSCCC-CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST
T ss_pred cchhHhhCCCCCEEECCCCcCC-eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCch
Confidence 34566666666666654321 1100 111222223 38999999986544
Q ss_pred ccCccCC------------------------------------C--CCCCcEEEecCCCCCCccCCccc--cCccEEecc
Q 041067 621 RLPSRIF------------------------------------N--LEFLTKLNLSGCSKLKRLPEISS--GNISWLFLR 660 (770)
Q Consensus 621 ~lp~~i~------------------------------------~--l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~l~ 660 (770)
..|..+. . .++|+.|++++|......|..+. ++|+.|+++
T Consensus 219 ~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 298 (844)
T 3j0a_A 219 DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298 (844)
T ss_dssp TTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEE
T ss_pred hHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECC
Confidence 4332221 1 26899999999885555555554 899999999
Q ss_pred CcCcccc-CcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCcccc
Q 041067 661 ETAIEEL-PSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIERIP 739 (770)
Q Consensus 661 ~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp 739 (770)
+|.+..+ |..+..+++|++|++++|...+..|..+..+++|+.|++++|......+..+..+++|+.|++++|.++.++
T Consensus 299 ~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp SCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred CCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence 9999976 457899999999999999877777888999999999999998766656667999999999999999999776
Q ss_pred hhhhCCCCCcEEecccCccCCcCCCCCCCC
Q 041067 740 KSISQLLMLRYLLLSYSESLQSSPKPPFRA 769 (770)
Q Consensus 740 ~~l~~l~~L~~L~l~~c~~L~~lP~lp~~l 769 (770)
. +++|+.|++++|+ +..+|..+.++
T Consensus 379 ~----~~~L~~L~l~~N~-l~~l~~~~~~l 403 (844)
T 3j0a_A 379 F----IPSIPDIFLSGNK-LVTLPKINLTA 403 (844)
T ss_dssp S----CCSCSEEEEESCC-CCCCCCCCTTC
T ss_pred C----CCCcchhccCCCC-ccccccccccc
Confidence 4 7899999999997 78888776654
No 50
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=4.9e-20 Score=211.87 Aligned_cols=92 Identities=26% Similarity=0.398 Sum_probs=59.3
Q ss_pred cccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCC-cccCcccCCCCCCcEEEccCCCCccc-chhhhCCCCC
Q 041067 671 IERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNL-QRLPECLAQFSSPIILNLAKTNIERI-PKSISQLLML 748 (770)
Q Consensus 671 i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~-~~lp~~l~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L 748 (770)
+..+++|++|++++|...+..|..+..+++|++|++++|... +.+|..++.+++|+.|++++|.++.+ |..+..+++|
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 334444444444444444444555566666666666666554 35677777777788888887777755 6677778888
Q ss_pred cEEecccCccCCcCC
Q 041067 749 RYLLLSYSESLQSSP 763 (770)
Q Consensus 749 ~~L~l~~c~~L~~lP 763 (770)
+.|++++|+ ++.+|
T Consensus 497 ~~L~l~~n~-l~~~~ 510 (570)
T 2z63_A 497 QVLNMASNQ-LKSVP 510 (570)
T ss_dssp CEEECCSSC-CSCCC
T ss_pred CEEeCCCCc-CCCCC
Confidence 888888875 55555
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=201.89 Aligned_cols=249 Identities=14% Similarity=0.136 Sum_probs=196.9
Q ss_pred CCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCC-CC-CcccccccccCCCCccccccc-cccCcCC
Q 041067 505 PKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPS-NL-SAEKLMLLEVPDSDIEQLWDC-VKHYRKL 581 (770)
Q Consensus 505 ~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l~~~-~~~l~~L 581 (770)
++|+.|++++|.+.+..+..+..+ .+|++|++.+|.+..++. .+ .+.+|++|++++|.+..++.. +..+++|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 126 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRC-----VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL 126 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTC-----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred ccCcEEECCCCcCcccCHHHhccC-----CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC
Confidence 489999999998876433355555 489999999999888754 34 468999999999999988876 7889999
Q ss_pred cEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCccc-CccCCCCCCCcEEEecCCCCCCccCCccc--cCccEEe
Q 041067 582 NQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRL-PSRIFNLEFLTKLNLSGCSKLKRLPEISS--GNISWLF 658 (770)
Q Consensus 582 ~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~ 658 (770)
++|+++++.. ..+|....+.++++|++|++++|..+..+ |..++.+++|++|++++|......|.... ++|++|+
T Consensus 127 ~~L~L~~n~l--~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 204 (353)
T 2z80_A 127 TFLNLLGNPY--KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204 (353)
T ss_dssp SEEECTTCCC--SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CEEECCCCCC--cccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeec
Confidence 9999998753 45555456788899999999998656665 45788899999999999885555566555 7899999
Q ss_pred ccCcCccccCccc-ccCCCCCEEeccCCCCCCCCCcc---cCCCCCCcEEEeecCCCCc----ccCcccCCCCCCcEEEc
Q 041067 659 LRETAIEELPSSI-ERLHRLGYLDLLDCKRLKSLPRS---LWMLKSLGVLNLSGCSNLQ----RLPECLAQFSSPIILNL 730 (770)
Q Consensus 659 l~~~~i~~lp~~i-~~l~~L~~L~L~~~~~~~~lp~~---l~~l~~L~~L~l~~~~~~~----~lp~~l~~l~~L~~L~L 730 (770)
+++|.+..+|..+ ..+++|+.|++++|...+..+.. ......++.++++++...+ .+|..+..+++|+.|++
T Consensus 205 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~L 284 (353)
T 2z80_A 205 LHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF 284 (353)
T ss_dssp EECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred CCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEEC
Confidence 9999998888764 45899999999999865543332 2346778899998876654 47888899999999999
Q ss_pred cCCCCcccchhh-hCCCCCcEEecccCccCC
Q 041067 731 AKTNIERIPKSI-SQLLMLRYLLLSYSESLQ 760 (770)
Q Consensus 731 ~~~~l~~lp~~l-~~l~~L~~L~l~~c~~L~ 760 (770)
++|.++.+|..+ ..+++|+.|++++|+-..
T Consensus 285 s~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 285 SRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 999999999875 889999999999998433
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=1.2e-20 Score=198.87 Aligned_cols=219 Identities=20% Similarity=0.224 Sum_probs=186.2
Q ss_pred CceeEEEEcCCCCCCCCCC-C-CcccccccccCCCCcccc---ccccccCcCCcEEccCcCcCccccCCCCCCCCCccce
Q 041067 534 GEVKYLHWYGYPLKSLPSN-L-SAEKLMLLEVPDSDIEQL---WDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKL 608 (770)
Q Consensus 534 ~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~l~~~~i~~l---~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L 608 (770)
.+|+.|++.++.++.+|.. + .+.+|++|++++|.+..+ +..+..+++|++|+++++.. ..+|. .+.++++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i--~~l~~--~~~~l~~L 103 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSS--NFLGLEQL 103 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE--EEEEE--EEETCTTC
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc--ccChh--hcCCCCCC
Confidence 6899999999999999975 3 579999999999999865 56677899999999999763 34443 46778999
Q ss_pred eEEeccCCCCCcccC--ccCCCCCCCcEEEecCCCCCCccCCccc--cCccEEeccCcCccc--cCcccccCCCCCEEec
Q 041067 609 VLLNLRGSKSLKRLP--SRIFNLEFLTKLNLSGCSKLKRLPEISS--GNISWLFLRETAIEE--LPSSIERLHRLGYLDL 682 (770)
Q Consensus 609 ~~L~L~~~~~l~~lp--~~i~~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~L 682 (770)
++|++++|. +..+| ..+..+++|++|++++|......|.... ++|++|++++|.+.. +|..+..+++|++|++
T Consensus 104 ~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 104 EHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182 (306)
T ss_dssp CEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence 999999998 45554 4688999999999999985555555554 899999999999985 8999999999999999
Q ss_pred cCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCcc-cchhhhCCC-CCcEEecccCc
Q 041067 683 LDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIER-IPKSISQLL-MLRYLLLSYSE 757 (770)
Q Consensus 683 ~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~-lp~~l~~l~-~L~~L~l~~c~ 757 (770)
++|...+..|..+..+++|++|++++|...+..+..+..+++|+.|++++|.++. .|..+..++ +|+.|++++|+
T Consensus 183 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 9998766668889999999999999988766666688999999999999999984 566788885 99999999997
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=4.6e-19 Score=196.87 Aligned_cols=212 Identities=22% Similarity=0.259 Sum_probs=81.3
Q ss_pred ceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEecc
Q 041067 535 EVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLR 614 (770)
Q Consensus 535 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~ 614 (770)
+|++|++.+|.+..+|....+.+|++|++++|.+..+|... ++|+.|++++|. + ..+|. +.++++|++|+++
T Consensus 174 ~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~-l-~~lp~---~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 174 SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNI-L-EELPE---LQNLPFLTTIYAD 245 (454)
T ss_dssp TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSC-C-SSCCC---CTTCTTCCEEECC
T ss_pred cccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCc-C-Ccccc---cCCCCCCCEEECC
Confidence 44444444444444443223344444444444444433221 244444444432 2 23331 3444555555555
Q ss_pred CCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccccCccEEeccCcCccccCcc---cc-------------cC-CCC
Q 041067 615 GSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISSGNISWLFLRETAIEELPSS---IE-------------RL-HRL 677 (770)
Q Consensus 615 ~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~l~~~~i~~lp~~---i~-------------~l-~~L 677 (770)
+|. +..+|.. +++|++|++++|. +..+|... .+|++|++++|.+..+|.. +. .+ ++|
T Consensus 246 ~N~-l~~l~~~---~~~L~~L~l~~N~-l~~l~~~~-~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L 319 (454)
T 1jl5_A 246 NNL-LKTLPDL---PPSLEALNVRDNY-LTDLPELP-QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSL 319 (454)
T ss_dssp SSC-CSSCCSC---CTTCCEEECCSSC-CSCCCCCC-TTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTC
T ss_pred CCc-CCccccc---ccccCEEECCCCc-ccccCccc-CcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcC
Confidence 544 3334431 2445555555543 33343322 3455555555555443311 10 11 244
Q ss_pred CEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCcc---cchhhhCC---------
Q 041067 678 GYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIER---IPKSISQL--------- 745 (770)
Q Consensus 678 ~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~---lp~~l~~l--------- 745 (770)
++|++++|... .+|.. +++|++|++++|.. ..+|. .+++|+.|++++|.++. +|.++..+
T Consensus 320 ~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~l-~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i 391 (454)
T 1jl5_A 320 EELNVSNNKLI-ELPAL---PPRLERLIASFNHL-AEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEV 391 (454)
T ss_dssp CEEECCSSCCS-CCCCC---CTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----
T ss_pred CEEECCCCccc-ccccc---CCcCCEEECCCCcc-ccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccccc
Confidence 44444444322 23332 34555555555432 24444 34556666666666553 44455444
Q ss_pred ----CCCcEEecccCccCCcCCCCCCCC
Q 041067 746 ----LMLRYLLLSYSESLQSSPKPPFRA 769 (770)
Q Consensus 746 ----~~L~~L~l~~c~~L~~lP~lp~~l 769 (770)
++|+.|++++|+ ++.+|.+|+++
T Consensus 392 ~~~~~~L~~L~ls~N~-l~~~~~iP~sl 418 (454)
T 1jl5_A 392 PELPQNLKQLHVETNP-LREFPDIPESV 418 (454)
T ss_dssp ----------------------------
T ss_pred ccccCcCCEEECCCCc-CCccccchhhH
Confidence 556666666654 55566666554
No 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.83 E-value=1.4e-19 Score=202.46 Aligned_cols=240 Identities=17% Similarity=0.209 Sum_probs=110.3
Q ss_pred ccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccccccccCcC
Q 041067 501 FTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDCVKHYRK 580 (770)
Q Consensus 501 ~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~ 580 (770)
+.++++|+.|++++|.+.+..| +..+ .+|++|++.+|.+..+|....+.+|++|++++|.+..++. +..+++
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~--~~~l-----~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~ 157 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP--LANL-----TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTS 157 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GTTC-----TTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTT
T ss_pred hhccccCCEEECCCCccccChh--hcCC-----CCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCc
Confidence 4455555555555554444211 2222 3555555555555555543334555555555555544432 333333
Q ss_pred CcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc-cCccEEec
Q 041067 581 LNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS-GNISWLFL 659 (770)
Q Consensus 581 L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L~l 659 (770)
|+.|+++++ + .. ...+.++++|++|++++|. +..++. +..+++|++|++++|......| ... ++|++|++
T Consensus 158 L~~L~l~~~--~-~~---~~~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l 228 (466)
T 1o6v_A 158 LQQLSFGNQ--V-TD---LKPLANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELSL 228 (466)
T ss_dssp CSEEEEEES--C-CC---CGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEEC
T ss_pred ccEeecCCc--c-cC---chhhccCCCCCEEECcCCc-CCCChh-hccCCCCCEEEecCCccccccc-ccccCCCCEEEC
Confidence 333333210 0 01 1123445556666666555 333332 4455555555555554222222 111 44555555
Q ss_pred cCcCccccCcccccCCCCCEEeccCCCCCC---------------------CCCcccCCCCCCcEEEeecCCCCcccCcc
Q 041067 660 RETAIEELPSSIERLHRLGYLDLLDCKRLK---------------------SLPRSLWMLKSLGVLNLSGCSNLQRLPEC 718 (770)
Q Consensus 660 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~---------------------~lp~~l~~l~~L~~L~l~~~~~~~~lp~~ 718 (770)
++|.+..++ .+..+++|++|++++|...+ .+|. +..+++|+.|++++|...+ ++.
T Consensus 229 ~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~-~~~- 304 (466)
T 1o6v_A 229 NGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLED-ISP- 304 (466)
T ss_dssp CSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSC-CGG-
T ss_pred CCCCcccch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccC-chh-
Confidence 555444443 24444444444444444322 2222 4455555555555544322 222
Q ss_pred cCCCCCCcEEEccCCCCcccchhhhCCCCCcEEecccCccCCcCC
Q 041067 719 LAQFSSPIILNLAKTNIERIPKSISQLLMLRYLLLSYSESLQSSP 763 (770)
Q Consensus 719 l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~L~~lP 763 (770)
++.+++|+.|++++|.++.++. +..+++|+.|++++|+ ++.+|
T Consensus 305 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~ 347 (466)
T 1o6v_A 305 ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK-VSDVS 347 (466)
T ss_dssp GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC-CCCCG
T ss_pred hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCc-cCCch
Confidence 4555566666666666554443 4556666666666664 44443
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=1.8e-21 Score=206.16 Aligned_cols=246 Identities=11% Similarity=0.002 Sum_probs=201.8
Q ss_pred ccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccccccccC
Q 041067 499 STFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDCVKHY 578 (770)
Q Consensus 499 ~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l 578 (770)
..+..+++|+.|++++|.+.+..|..+..++ +|++|++++|.+..+++...+.+|++|++++|.+..++ ..
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~ 98 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFT-----KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----VG 98 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCT-----TCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE----EC
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCC-----cCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc----CC
Confidence 4456778999999999999886555666665 99999999999987776556789999999999998776 34
Q ss_pred cCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc---cCcc
Q 041067 579 RKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS---GNIS 655 (770)
Q Consensus 579 ~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~---~~L~ 655 (770)
++|++|++++|..- .++. ..+++|++|++++|......|..++.+++|++|++++|......|.... ++|+
T Consensus 99 ~~L~~L~l~~n~l~--~~~~----~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 99 PSIETLHAANNNIS--RVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (317)
T ss_dssp TTCCEEECCSSCCS--EEEE----CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred CCcCEEECCCCccC--CcCc----cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCC
Confidence 89999999997642 3332 2367899999999986555566788899999999999975544444432 7999
Q ss_pred EEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCC
Q 041067 656 WLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNI 735 (770)
Q Consensus 656 ~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l 735 (770)
+|++++|.+..+|.. ..+++|++|++++|.. ..+|..+..+++|+.|++++|.. ..+|..+..+++|+.|++++|++
T Consensus 173 ~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 173 HLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp EEECTTSCCCEEECC-CCCTTCCEEECCSSCC-CEECGGGGGGTTCSEEECTTSCC-CEECTTCCCCTTCCEEECTTCCC
T ss_pred EEECCCCcCcccccc-cccccCCEEECCCCcC-CcchhhhcccCcccEEECcCCcc-cchhhHhhcCCCCCEEEccCCCc
Confidence 999999999988654 4589999999999875 56777799999999999999764 57899999999999999999999
Q ss_pred c--ccchhhhCCCCCcEEecccCccCCcC
Q 041067 736 E--RIPKSISQLLMLRYLLLSYSESLQSS 762 (770)
Q Consensus 736 ~--~lp~~l~~l~~L~~L~l~~c~~L~~l 762 (770)
. .+|.++..+++|+.|++++|+.++..
T Consensus 250 ~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp BHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred cCcCHHHHHhccccceEEECCCchhccCC
Confidence 8 78888999999999999977766544
No 56
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=3.6e-20 Score=211.99 Aligned_cols=251 Identities=16% Similarity=0.207 Sum_probs=187.8
Q ss_pred CCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCC-CC-CcccccccccCCCCccccccc-cccCcCC
Q 041067 505 PKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPS-NL-SAEKLMLLEVPDSDIEQLWDC-VKHYRKL 581 (770)
Q Consensus 505 ~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l~~~-~~~l~~L 581 (770)
++|+.|++++|.+.+..|..+..++ +|++|++++|.+..++. .+ .+.+|++|++++|.+..++.. +..+++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACA-----NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCccEEECcCCccCccChhhhhcCC-----cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 6899999999999876666666665 99999999999998874 44 479999999999999988776 8999999
Q ss_pred cEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccC-ccCCCCCCCcEEEecCCCCCCccCCccc--c------
Q 041067 582 NQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLP-SRIFNLEFLTKLNLSGCSKLKRLPEISS--G------ 652 (770)
Q Consensus 582 ~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~~~--~------ 652 (770)
++|++++|.. ..++.+..+.++++|++|++++|.....+| ..+..+++|++|++++|......|.... +
T Consensus 101 ~~L~Ls~n~l--~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 101 KYLNLMGNPY--QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp CEEECTTCCC--SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred cEEECCCCcc--cccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 9999999763 333444578899999999999998777777 4788999999999999986655565443 3
Q ss_pred ------------------CccEEeccCcCccccC---cc-----------------------------cccC--------
Q 041067 653 ------------------NISWLFLRETAIEELP---SS-----------------------------IERL-------- 674 (770)
Q Consensus 653 ------------------~L~~L~l~~~~i~~lp---~~-----------------------------i~~l-------- 674 (770)
+|++|++++|.+..++ .. +..+
T Consensus 179 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l 258 (549)
T 2z81_A 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258 (549)
T ss_dssp EECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred cccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence 4555555555444321 00 0011
Q ss_pred ---------------------------------------------------CCCCEEeccCCCCCCCCCccc-CCCCCCc
Q 041067 675 ---------------------------------------------------HRLGYLDLLDCKRLKSLPRSL-WMLKSLG 702 (770)
Q Consensus 675 ---------------------------------------------------~~L~~L~L~~~~~~~~lp~~l-~~l~~L~ 702 (770)
.+|+.|++++|. .+.+|..+ ..+++|+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L~ 337 (549)
T 2z81_A 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLE 337 (549)
T ss_dssp ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTCC
T ss_pred ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcCcccc
Confidence 123333333332 22345444 3588889
Q ss_pred EEEeecCCCCcccC---cccCCCCCCcEEEccCCCCcccc---hhhhCCCCCcEEecccCccCCcCCC
Q 041067 703 VLNLSGCSNLQRLP---ECLAQFSSPIILNLAKTNIERIP---KSISQLLMLRYLLLSYSESLQSSPK 764 (770)
Q Consensus 703 ~L~l~~~~~~~~lp---~~l~~l~~L~~L~L~~~~l~~lp---~~l~~l~~L~~L~l~~c~~L~~lP~ 764 (770)
+|++++|...+.+| ..++.+++|+.|++++|.++.+| ..+..+++|+.|++++|+ ++.+|.
T Consensus 338 ~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~ 404 (549)
T 2z81_A 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPD 404 (549)
T ss_dssp EEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCS
T ss_pred EEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccCCh
Confidence 99999888777664 34788999999999999999776 357889999999999995 788875
No 57
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=3.8e-19 Score=208.90 Aligned_cols=255 Identities=21% Similarity=0.164 Sum_probs=161.5
Q ss_pred ecCcccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCC-C-CcccccccccCCCCccccc
Q 041067 495 HLNPSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSN-L-SAEKLMLLEVPDSDIEQLW 572 (770)
Q Consensus 495 ~~~~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~l~~~~i~~l~ 572 (770)
.+.+..|.++++|++|++++|.+.+..|..+..++ +|++|++++|.+..+|.. | .+.+|++|++++|.+..++
T Consensus 39 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 113 (680)
T 1ziw_A 39 RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLP-----MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113 (680)
T ss_dssp CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCT-----TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CcCHHHHhCCCcCcEEECCCCccCccCHHHHhccc-----CcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccC
Confidence 34456688888888888888888776565566554 888888888888888763 4 4688888888888887776
Q ss_pred -cccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccC--CCCCCCcEEEecCCCCCC-----
Q 041067 573 -DCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRI--FNLEFLTKLNLSGCSKLK----- 644 (770)
Q Consensus 573 -~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i--~~l~~L~~L~L~~~~~l~----- 644 (770)
..+..+++|++|++++|..- ...| ..+.++++|++|++++|......|..+ ..+++|++|++++|...+
T Consensus 114 ~~~~~~l~~L~~L~Ls~n~l~-~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 190 (680)
T 1ziw_A 114 NNPFVKQKNLITLDLSHNGLS-STKL--GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCS-CCCC--CSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG
T ss_pred hhHccccCCCCEEECCCCccc-ccCc--hhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhh
Confidence 45778888888888876532 2222 245566777777777665332222222 133556666665554222
Q ss_pred ----------------------------------------------ccCCccc----cCccEEeccCcCccccC-ccccc
Q 041067 645 ----------------------------------------------RLPEISS----GNISWLFLRETAIEELP-SSIER 673 (770)
Q Consensus 645 ----------------------------------------------~lp~~~~----~~L~~L~l~~~~i~~lp-~~i~~ 673 (770)
..|..+. .+|++|++++|.+..++ ..+..
T Consensus 191 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~ 270 (680)
T 1ziw_A 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 270 (680)
T ss_dssp GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTT
T ss_pred hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccC
Confidence 2222221 23666666666666443 34666
Q ss_pred CCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCc-----ccCc----ccCCCCCCcEEEccCCCCcccc-hhhh
Q 041067 674 LHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQ-----RLPE----CLAQFSSPIILNLAKTNIERIP-KSIS 743 (770)
Q Consensus 674 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~-----~lp~----~l~~l~~L~~L~L~~~~l~~lp-~~l~ 743 (770)
+++|++|++++|...+..|..+..+++|+.|++++|...+ .+|. .++.+++|+.|++++|.++.++ ..+.
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 350 (680)
T 1ziw_A 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350 (680)
T ss_dssp CTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTT
T ss_pred cccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhc
Confidence 6666666666666555555566666666666666543222 2333 5667777888888888777544 4567
Q ss_pred CCCCCcEEecccCc
Q 041067 744 QLLMLRYLLLSYSE 757 (770)
Q Consensus 744 ~l~~L~~L~l~~c~ 757 (770)
.+++|+.|++++|.
T Consensus 351 ~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 351 GLINLKYLSLSNSF 364 (680)
T ss_dssp TCTTCCEEECTTCB
T ss_pred cccCCcEEECCCCc
Confidence 78888888888775
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=1.5e-18 Score=198.72 Aligned_cols=220 Identities=21% Similarity=0.209 Sum_probs=138.6
Q ss_pred CCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccccccccCcCCcEE
Q 041067 505 PKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDCVKHYRKLNQI 584 (770)
Q Consensus 505 ~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L 584 (770)
++|+.|++++|.+.. +|. .+.+|++|++++|.++.+|. .+.+|++|++++|.+..+|. .+++|+.|
T Consensus 61 ~~L~~L~L~~N~l~~-lp~--------~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L 126 (622)
T 3g06_A 61 AHITTLVIPDNNLTS-LPA--------LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA---LPSGLCKL 126 (622)
T ss_dssp TTCSEEEECSCCCSC-CCC--------CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC---CCTTCCEE
T ss_pred CCCcEEEecCCCCCC-CCC--------cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC---CCCCcCEE
Confidence 455555555555442 222 11355555555555555554 33455555555555554444 33444444
Q ss_pred ccCcCcCccccCCCCC--------------CC-CCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCc
Q 041067 585 IPAACNKLIAKTPNPM--------------LM-PRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEI 649 (770)
Q Consensus 585 ~L~~~~~l~~~~p~~~--------------~~-~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 649 (770)
++++|. + ..+|... .+ ..+.+|+.|++++|. +..+| ..+++|++|++++|. +..+|..
T Consensus 127 ~L~~N~-l-~~lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~-l~~l~---~~~~~L~~L~Ls~N~-l~~l~~~ 199 (622)
T 3g06_A 127 WIFGNQ-L-TSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQ-LTSLP---MLPSGLQELSVSDNQ-LASLPTL 199 (622)
T ss_dssp ECCSSC-C-SCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCCC
T ss_pred ECCCCC-C-CcCCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCC-CCCCc---ccCCCCcEEECCCCC-CCCCCCc
Confidence 444432 1 2222200 00 012344555555444 33344 234777888888776 5556654
Q ss_pred cccCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEE
Q 041067 650 SSGNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILN 729 (770)
Q Consensus 650 ~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~ 729 (770)
. .+|+.|++++|.+..+|.. +++|++|++++|.. ..+| ..+++|+.|++++|. +..+|. .+++|+.|+
T Consensus 200 ~-~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L-~~lp---~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~ 267 (622)
T 3g06_A 200 P-SELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRL-TSLP---VLPSELKELMVSGNR-LTSLPM---LPSGLLSLS 267 (622)
T ss_dssp C-TTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCC-SCCC---CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEE
T ss_pred c-chhhEEECcCCcccccCCC---CCCCCEEEccCCcc-CcCC---CCCCcCcEEECCCCC-CCcCCc---ccccCcEEe
Confidence 3 5788888888888877753 47899999999864 4577 456889999999975 457776 678999999
Q ss_pred ccCCCCcccchhhhCCCCCcEEecccCc
Q 041067 730 LAKTNIERIPKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 730 L~~~~l~~lp~~l~~l~~L~~L~l~~c~ 757 (770)
+++|.++.+|..+.++++|+.|++++|+
T Consensus 268 Ls~N~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 268 VYRNQLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCSSCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCCCCCCcCCHHHhhccccCEEEecCCC
Confidence 9999999999999999999999999998
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=4.2e-19 Score=197.80 Aligned_cols=223 Identities=18% Similarity=0.188 Sum_probs=189.6
Q ss_pred CCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCC-CCC-cccccccccCCCCccccccc-cccCcCC
Q 041067 505 PKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPS-NLS-AEKLMLLEVPDSDIEQLWDC-VKHYRKL 581 (770)
Q Consensus 505 ~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~-~~~-~~~L~~L~l~~~~i~~l~~~-~~~l~~L 581 (770)
++++.|++++|.+.+..|..+..++ +|++|++++|.+..++. .|. +.+|++|++++|.+..++.. +..+++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~-----~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 149 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLH-----HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL 149 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCT-----TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred CCccEEECcCCcCceECHHHcCCCC-----CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence 6899999999999886666666665 99999999999998873 444 78999999999999988775 7889999
Q ss_pred cEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCc-cCCCCCCCcEEEecCCCCCCccCCccc-cCccEEec
Q 041067 582 NQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPS-RIFNLEFLTKLNLSGCSKLKRLPEISS-GNISWLFL 659 (770)
Q Consensus 582 ~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L~l 659 (770)
++|+|+++.. ..+|. ..+.++++|++|++++|+.+..+|. .+..+++|++|++++|. +..+|.... .+|++|++
T Consensus 150 ~~L~L~~N~l--~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L 225 (452)
T 3zyi_A 150 RELWLRNNPI--ESIPS-YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEM 225 (452)
T ss_dssp CEEECCSCCC--CEECT-TTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEEC
T ss_pred CEEECCCCCc--ceeCH-hHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccccccccccccEEEC
Confidence 9999999763 34443 3578899999999999888888876 47889999999999986 667787655 89999999
Q ss_pred cCcCcccc-CcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCc
Q 041067 660 RETAIEEL-PSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIE 736 (770)
Q Consensus 660 ~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~ 736 (770)
++|.+..+ |..+..+++|++|++++|...+..|..+..+++|+.|+|++|...+..+..+..+++|+.|+|++|++.
T Consensus 226 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 99999977 667999999999999999987777888999999999999998766555567899999999999999865
No 60
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=1e-18 Score=205.35 Aligned_cols=260 Identities=22% Similarity=0.236 Sum_probs=164.8
Q ss_pred cCcccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCC------CCCC----CC-CcccccccccC
Q 041067 496 LNPSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLK------SLPS----NL-SAEKLMLLEVP 564 (770)
Q Consensus 496 ~~~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~------~lp~----~~-~~~~L~~L~l~ 564 (770)
+.+..|.++++|+.|++++|.+.+..|..+..++ +|++|++.++... .+|. .+ .+.+|++|+++
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~ 337 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF-----NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCT-----TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCC-----CccEEeccchhhhcccccccccccChhhcccCCCCCEEECC
Confidence 3355677777777777777776665454444443 5555555543222 2331 12 24555556665
Q ss_pred CCCcccccc-ccccCcCCcEEccCcC----------------------------cCccccCCCCCCCCCccceeEEeccC
Q 041067 565 DSDIEQLWD-CVKHYRKLNQIIPAAC----------------------------NKLIAKTPNPMLMPRLNKLVLLNLRG 615 (770)
Q Consensus 565 ~~~i~~l~~-~~~~l~~L~~L~L~~~----------------------------~~l~~~~p~~~~~~~L~~L~~L~L~~ 615 (770)
+|.+..++. .+..+++|++|++++| ..- ...| ..+.++++|++|++++
T Consensus 338 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~-~~~~--~~~~~l~~L~~L~L~~ 414 (680)
T 1ziw_A 338 DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS-KIES--DAFSWLGHLEVLDLGL 414 (680)
T ss_dssp SCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC-EECT--TTTTTCTTCCEEECCS
T ss_pred CCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCC-eECh--hhhhCCCCCCEEeCCC
Confidence 555554432 2445555555555544 221 1111 2455666677777776
Q ss_pred CCCCcccC-ccCCCCCCCcEEEecCCCCCCccCCccc--cCccEEeccCcCcc---ccCcccccCCCCCEEeccCCCCCC
Q 041067 616 SKSLKRLP-SRIFNLEFLTKLNLSGCSKLKRLPEISS--GNISWLFLRETAIE---ELPSSIERLHRLGYLDLLDCKRLK 689 (770)
Q Consensus 616 ~~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~L~~~~~~~ 689 (770)
|.....+| ..+..+++|++|++++|......+..+. ++|+.|++++|.+. .+|..+..+++|+.|++++|...+
T Consensus 415 N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~ 494 (680)
T 1ziw_A 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494 (680)
T ss_dssp SCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC
T ss_pred CcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc
Confidence 66444454 3556667777777777653222222222 67777777777664 567778888899999999888665
Q ss_pred CCCcccCCCCCCcEEEeecCCCCccc----C----cccCCCCCCcEEEccCCCCcccch-hhhCCCCCcEEecccCccCC
Q 041067 690 SLPRSLWMLKSLGVLNLSGCSNLQRL----P----ECLAQFSSPIILNLAKTNIERIPK-SISQLLMLRYLLLSYSESLQ 760 (770)
Q Consensus 690 ~lp~~l~~l~~L~~L~l~~~~~~~~l----p----~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~c~~L~ 760 (770)
..|..+..+++|+.|++++|...+.. | ..++.+++|+.|++++|.++.+|. .+..+++|+.|++++|. ++
T Consensus 495 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~ 573 (680)
T 1ziw_A 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN-LN 573 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CC
T ss_pred CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCC-CC
Confidence 55556888899999999987654321 1 237888999999999999998886 47889999999999886 77
Q ss_pred cCCC
Q 041067 761 SSPK 764 (770)
Q Consensus 761 ~lP~ 764 (770)
.+|.
T Consensus 574 ~l~~ 577 (680)
T 1ziw_A 574 TLPA 577 (680)
T ss_dssp CCCT
T ss_pred cCCH
Confidence 7775
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=4.2e-20 Score=207.23 Aligned_cols=234 Identities=11% Similarity=0.005 Sum_probs=193.3
Q ss_pred CCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccccccccCcCCc
Q 041067 503 KMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDCVKHYRKLN 582 (770)
Q Consensus 503 ~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~ 582 (770)
.+++|+.|++++|.+.+..|..+..++ +|++|++++|.+..+++...+.+|++|++++|.+..++.. ++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~----~~L~ 102 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFT-----KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG----PSIE 102 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCT-----TCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC----TTCC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCC-----CCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC----CCcC
Confidence 445899999999999986666776665 9999999999998777655679999999999999887643 8999
Q ss_pred EEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc---cCccEEec
Q 041067 583 QIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS---GNISWLFL 659 (770)
Q Consensus 583 ~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~---~~L~~L~l 659 (770)
.|++++|..- .++. ..+++|++|+|++|......|..++.+++|++|++++|......|.... ++|++|++
T Consensus 103 ~L~L~~N~l~--~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 103 TLHAANNNIS--RVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp EEECCSSCCC--CEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred EEECcCCcCC--CCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 9999997642 2222 3467899999999986666677888999999999999986665665543 79999999
Q ss_pred cCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCc--c
Q 041067 660 RETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIE--R 737 (770)
Q Consensus 660 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~--~ 737 (770)
++|.+..+|. ...+++|++|++++|.. ..+|+.+..+++|+.|++++|... .+|..++.+++|+.|++++|++. .
T Consensus 177 s~N~l~~~~~-~~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 177 QYNFIYDVKG-QVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp TTSCCCEEEC-CCCCTTCCEEECCSSCC-CEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred CCCccccccc-cccCCCCCEEECCCCCC-CCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcc
Confidence 9999998865 44689999999999885 457777899999999999997654 68888999999999999999998 7
Q ss_pred cchhhhCCCCCcEEecc
Q 041067 738 IPKSISQLLMLRYLLLS 754 (770)
Q Consensus 738 lp~~l~~l~~L~~L~l~ 754 (770)
+|.++..++.|+.|+++
T Consensus 254 ~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 254 LRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred hHHHHHhCCCCcEEecc
Confidence 88888888888888886
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=206.53 Aligned_cols=257 Identities=18% Similarity=0.160 Sum_probs=196.8
Q ss_pred cccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCCcccccccccCCCCcccccccccc
Q 041067 498 PSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDCVKH 577 (770)
Q Consensus 498 ~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~ 577 (770)
+..|..+++|+.|+++++.+.+ +|..+. .+ +|+.|++.+|.+..+|. ..+.+|+.|++.++.+...... ..
T Consensus 275 ~~~~~~l~~L~~L~l~~~~l~~-l~~~~~-----~~-~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~~~~~~~~-~~ 345 (570)
T 2z63_A 275 IDLFNCLTNVSSFSLVSVTIER-VKDFSY-----NF-GWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGNAFSE-VD 345 (570)
T ss_dssp TTTTGGGTTCSEEEEESCEECS-CCBCCS-----CC-CCSEEEEESCBCSSCCB-CBCSSCCEEEEESCBSCCBCCC-CB
T ss_pred hhhhcCcCcccEEEecCccchh-hhhhhc-----cC-CccEEeeccCcccccCc-ccccccCEEeCcCCcccccccc-cc
Confidence 3456667778888887776653 443332 22 67778888887777776 3557788888887776654333 67
Q ss_pred CcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCC-ccc--cCc
Q 041067 578 YRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPE-ISS--GNI 654 (770)
Q Consensus 578 l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~~~--~~L 654 (770)
+++|+.|++++|..- ........+.++++|++|++++|. +..+|..+..+++|++|++++|......|. ... ++|
T Consensus 346 ~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 346 LPSLEFLDLSRNGLS-FKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CTTCCEEECCSSCCB-EEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred CCCCCEEeCcCCccC-ccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 888888988886532 111001235567889999999887 555666688999999999999875444442 222 899
Q ss_pred cEEeccCcCccc-cCcccccCCCCCEEeccCCCCC-CCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccC
Q 041067 655 SWLFLRETAIEE-LPSSIERLHRLGYLDLLDCKRL-KSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAK 732 (770)
Q Consensus 655 ~~L~l~~~~i~~-lp~~i~~l~~L~~L~L~~~~~~-~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~ 732 (770)
++|++++|.+.. .|..+..+++|++|++++|... +.+|..+..+++|++|++++|...+..|..++.+++|+.|++++
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 999999999885 5667899999999999999875 57899999999999999999988887799999999999999999
Q ss_pred CCCcccch-hhhCCCCCcEEecccCccCCcCCCC
Q 041067 733 TNIERIPK-SISQLLMLRYLLLSYSESLQSSPKP 765 (770)
Q Consensus 733 ~~l~~lp~-~l~~l~~L~~L~l~~c~~L~~lP~l 765 (770)
|.++.+|. .+.++++|+.|++++|+--...|..
T Consensus 504 n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 99997764 5789999999999999966666643
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=6.8e-19 Score=195.36 Aligned_cols=223 Identities=17% Similarity=0.190 Sum_probs=186.1
Q ss_pred CCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCC-CC-CcccccccccCCCCcccccc-ccccCcCC
Q 041067 505 PKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPS-NL-SAEKLMLLEVPDSDIEQLWD-CVKHYRKL 581 (770)
Q Consensus 505 ~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l~~-~~~~l~~L 581 (770)
++++.|++++|.+.+..+..+..++ +|++|++++|.+..++. .| .+.+|++|++++|.+..++. .+..+++|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~-----~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 138 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLR-----HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKL 138 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCS-----SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCC-----CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccC
Confidence 6789999999988875555665554 89999999999988773 34 46899999999999998876 47889999
Q ss_pred cEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCc-cCCCCCCCcEEEecCCCCCCccCCccc-cCccEEec
Q 041067 582 NQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPS-RIFNLEFLTKLNLSGCSKLKRLPEISS-GNISWLFL 659 (770)
Q Consensus 582 ~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L~l 659 (770)
+.|+++++.. ..+|. ..+.++++|++|++++|+.+..+|. .+..+++|++|++++|. ++.+|.... .+|++|++
T Consensus 139 ~~L~L~~N~i--~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L 214 (440)
T 3zyj_A 139 KELWLRNNPI--ESIPS-YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDL 214 (440)
T ss_dssp CEEECCSCCC--CEECT-TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEEC
T ss_pred ceeeCCCCcc--cccCH-HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCcccCEEEC
Confidence 9999998753 34442 3577889999999999888888876 57789999999999986 778887655 89999999
Q ss_pred cCcCcccc-CcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCc
Q 041067 660 RETAIEEL-PSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIE 736 (770)
Q Consensus 660 ~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~ 736 (770)
++|.+..+ |..+..+++|+.|++++|......|..+.++++|+.|+|++|......+..+..+++|+.|+|++|++.
T Consensus 215 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 99999977 667899999999999999877666778999999999999998776656667899999999999999865
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=3.1e-18 Score=196.16 Aligned_cols=221 Identities=22% Similarity=0.171 Sum_probs=151.7
Q ss_pred CCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccccccccCcCCcEE
Q 041067 505 PKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDCVKHYRKLNQI 584 (770)
Q Consensus 505 ~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L 584 (770)
.+++.|+++++.+.. +|..+. ++|++|++.+|.++.+|. .+.+|++|++++|.+..+|. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~~-lp~~l~-------~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLTT-LPDCLP-------AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCSC-CCSCCC-------TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEE
T ss_pred CCCcEEEecCCCcCc-cChhhC-------CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEE
Confidence 358889999988873 554432 599999999999999998 57899999999999999987 78999999
Q ss_pred ccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccccCccEEeccCcCc
Q 041067 585 IPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISSGNISWLFLRETAI 664 (770)
Q Consensus 585 ~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~l~~~~i 664 (770)
++++|.. ..+|. .+++|++|++++|. +..+|.. +++|++|++++|. +..+|... .+|+.|++++|.+
T Consensus 107 ~Ls~N~l--~~l~~-----~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~~-~~L~~L~L~~N~l 173 (622)
T 3g06_A 107 SIFSNPL--THLPA-----LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPALP-SELCKLWAYNNQL 173 (622)
T ss_dssp EECSCCC--CCCCC-----CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCCCC-TTCCEEECCSSCC
T ss_pred ECcCCcC--CCCCC-----CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCc-CCCcCCcc-CCCCEEECCCCCC
Confidence 9998753 44554 46788899998887 6667763 4788888888885 55666533 4677777777777
Q ss_pred cccCcccccCCCCCEEeccCCCCCCCCCcccC-----------------CCCCCcEEEeecCCCCcccCcccCCCCCCcE
Q 041067 665 EELPSSIERLHRLGYLDLLDCKRLKSLPRSLW-----------------MLKSLGVLNLSGCSNLQRLPECLAQFSSPII 727 (770)
Q Consensus 665 ~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~-----------------~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~ 727 (770)
..+| ..+++|+.|++++|.. ..+|..+. .+++|++|++++|.. ..+| ..+++|+.
T Consensus 174 ~~l~---~~~~~L~~L~Ls~N~l-~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L-~~lp---~~l~~L~~ 245 (622)
T 3g06_A 174 TSLP---MLPSGLQELSVSDNQL-ASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL-TSLP---VLPSELKE 245 (622)
T ss_dssp SCCC---CCCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCC-SCCC---CCCTTCCE
T ss_pred CCCc---ccCCCCcEEECCCCCC-CCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCcc-CcCC---CCCCcCcE
Confidence 7776 3456677777776653 33443211 124455555555432 2344 33455666
Q ss_pred EEccCCCCcccchhhhCCCCCcEEecccCccCCcCC
Q 041067 728 LNLAKTNIERIPKSISQLLMLRYLLLSYSESLQSSP 763 (770)
Q Consensus 728 L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~L~~lP 763 (770)
|++++|.++.+|. .+++|+.|++++|. ++.+|
T Consensus 246 L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~-L~~lp 277 (622)
T 3g06_A 246 LMVSGNRLTSLPM---LPSGLLSLSVYRNQ-LTRLP 277 (622)
T ss_dssp EECCSSCCSCCCC---CCTTCCEEECCSSC-CCSCC
T ss_pred EECCCCCCCcCCc---ccccCcEEeCCCCC-CCcCC
Confidence 6666666666554 44566666666664 55554
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=5.4e-19 Score=184.16 Aligned_cols=243 Identities=16% Similarity=0.147 Sum_probs=161.5
Q ss_pred CCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCC-CCCCC-cccccccccCCCC-cccc-ccccccCc
Q 041067 504 MPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSL-PSNLS-AEKLMLLEVPDSD-IEQL-WDCVKHYR 579 (770)
Q Consensus 504 l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~l-p~~~~-~~~L~~L~l~~~~-i~~l-~~~~~~l~ 579 (770)
.++|+.|++++|.+.+..+..+..+ .+|++|++.+|.+..+ |..+. +.+|++|++++|. +..+ +..+..++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~ 105 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRAC-----RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTC-----TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT
T ss_pred CCCceEEEeeCCcCCccCHHHcccC-----CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc
Confidence 4689999999999987544455555 4999999999999988 45554 6999999999997 8887 66789999
Q ss_pred CCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCc-cc--cCccE
Q 041067 580 KLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEI-SS--GNISW 656 (770)
Q Consensus 580 ~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~-~~--~~L~~ 656 (770)
+|++|+++++..- .++ ...+.++++|++|++++|......+..++.+++|++|++++|. ++.+|.. +. ++|++
T Consensus 106 ~L~~L~l~~n~l~--~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 106 RLHTLHLDRCGLQ--ELG-PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDR 181 (285)
T ss_dssp TCCEEECTTSCCC--CCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCcCC--EEC-HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCE
Confidence 9999999997642 332 2357889999999999998544334457889999999999975 4455542 22 56666
Q ss_pred EeccCcCcccc-CcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCC
Q 041067 657 LFLRETAIEEL-PSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNI 735 (770)
Q Consensus 657 L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l 735 (770)
|++++|.+..+ |..+..+++|+.|++++|...+..+..+..+++|+.|++++|......+.. .-+..|+.+....+.+
T Consensus 182 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~ 260 (285)
T 1ozn_A 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEV 260 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCC
T ss_pred EECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCcc
Confidence 66666666654 555666666666666666544433344666666666666665543222110 0001122223344444
Q ss_pred c-ccchhhhC--CCCCcEEecccC
Q 041067 736 E-RIPKSISQ--LLMLRYLLLSYS 756 (770)
Q Consensus 736 ~-~lp~~l~~--l~~L~~L~l~~c 756 (770)
. ..|..+.. +..+...++.+|
T Consensus 261 ~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 261 PCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp BEEESGGGTTCBGGGSCGGGSCCC
T ss_pred ccCCchHhCCcChhhcCHHHhccC
Confidence 4 55554432 344555555555
No 66
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.79 E-value=3.1e-21 Score=179.84 Aligned_cols=97 Identities=13% Similarity=0.224 Sum_probs=88.1
Q ss_pred echhhhhhh------hhhhhcCCCCCCCcchHHHHHHHHhccceeEeecCCccCchhhHHHHHHHHHhhccCCcEEEeEE
Q 041067 6 NFQLKVYKV------AELIKRRGVHGGDEISKSLVNVIEASAISVIVFSEGYASSRSCLDELVKILECKKEYAQIVIPFF 79 (770)
Q Consensus 6 ~~~~~~~~~------~~~~d~~~~~~g~~~~~~l~~ai~~s~~~ivv~s~~y~~s~~cl~El~~i~~~~~~~~~~v~pvf 79 (770)
+|+.++++. .+|+|++++++|+.|.++|.+||++|+++|+|+|++|++|.||++||.++++|.+..++.|+|||
T Consensus 34 ~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPV~ 113 (154)
T 3h16_A 34 DFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIW 113 (154)
T ss_dssp TTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHTCCCTTSCCCEEEEE
T ss_pred HHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 456666544 59999999999999999999999999999999999999999999999999999878888999999
Q ss_pred EEecCCccccccCcHHHHHHHHH
Q 041067 80 YRVDPSDVRNQTGSFGDSFSKLE 102 (770)
Q Consensus 80 ~~v~p~~vr~~~~~~~~~f~~~~ 102 (770)
|+|+|++||+|.|.|+++|..+.
T Consensus 114 ~~v~p~~v~~~~~~~~~~~~~~~ 136 (154)
T 3h16_A 114 HKVSKDEVASFSPTMADKLAFNT 136 (154)
T ss_dssp ESCCTGGGTTTCCCCCSSCCEET
T ss_pred ecCCHHHHhhCCccHHHHHhhhc
Confidence 99999999999999998766553
No 67
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=4.3e-19 Score=190.97 Aligned_cols=246 Identities=17% Similarity=0.149 Sum_probs=198.5
Q ss_pred EEEEEecCCcceeeecCcccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCC-C-Ccccc
Q 041067 481 IEGICLDMSKVKEIHLNPSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSN-L-SAEKL 558 (770)
Q Consensus 481 i~~i~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~-~-~~~~L 558 (770)
++.+.+.... ...+.+..|.++++|+.|++++|.+.+..|..+..++ +|++|++++|.+..+|.. + .+.+|
T Consensus 54 L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L 126 (353)
T 2z80_A 54 VKSLDLSNNR--ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG-----SLEHLDLSYNYLSNLSSSWFKPLSSL 126 (353)
T ss_dssp CCEEECTTSC--CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-----TCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred CcEEECCCCc--CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC-----CCCEEECCCCcCCcCCHhHhCCCccC
Confidence 4444444333 3344566799999999999999999875555666654 999999999999999875 3 47899
Q ss_pred cccccCCCCcccccc--ccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEE
Q 041067 559 MLLEVPDSDIEQLWD--CVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLN 636 (770)
Q Consensus 559 ~~L~l~~~~i~~l~~--~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 636 (770)
++|++++|.+..++. .+..+++|++|++++|..+ ..++. ..+.++++|++|++++|......|..++.+++|++|+
T Consensus 127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~-~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 204 (353)
T 2z80_A 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF-TKIQR-KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204 (353)
T ss_dssp SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC-CEECT-TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CEEECCCCCCcccCchhhhccCCCCcEEECCCCccc-cccCH-HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeec
Confidence 999999999999987 6889999999999998655 44432 3678899999999999997666788999999999999
Q ss_pred ecCCCCCCccCCccc---cCccEEeccCcCccccCcc----cccCCCCCEEeccCCCCCC----CCCcccCCCCCCcEEE
Q 041067 637 LSGCSKLKRLPEISS---GNISWLFLRETAIEELPSS----IERLHRLGYLDLLDCKRLK----SLPRSLWMLKSLGVLN 705 (770)
Q Consensus 637 L~~~~~l~~lp~~~~---~~L~~L~l~~~~i~~lp~~----i~~l~~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~ 705 (770)
+++|. ++.+|.... ++|++|++++|.+..++.. ....+.++.++++++...+ .+|..+.++++|+.|+
T Consensus 205 l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~ 283 (353)
T 2z80_A 205 LHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELE 283 (353)
T ss_dssp EECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred CCCCc-cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEE
Confidence 99987 566665433 7999999999999876532 3346778999999887644 4788889999999999
Q ss_pred eecCCCCcccCcc-cCCCCCCcEEEccCCCCcc
Q 041067 706 LSGCSNLQRLPEC-LAQFSSPIILNLAKTNIER 737 (770)
Q Consensus 706 l~~~~~~~~lp~~-l~~l~~L~~L~L~~~~l~~ 737 (770)
+++|... .+|.. ++.+++|+.|++++|++..
T Consensus 284 Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 284 FSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence 9997654 78876 5899999999999999883
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=5.9e-20 Score=194.50 Aligned_cols=224 Identities=12% Similarity=0.097 Sum_probs=186.1
Q ss_pred eecCcccccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCCcccccccccCCCCcccccc
Q 041067 494 IHLNPSTFTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWD 573 (770)
Q Consensus 494 ~~~~~~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~ 573 (770)
..+.+..|.++++|+.|++++|.+.+..| +..+ .+|++|++++|.+..+|.. .+|++|++++|.+..++.
T Consensus 47 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l-----~~L~~L~Ls~n~l~~l~~~---~~L~~L~l~~n~l~~~~~ 116 (317)
T 3o53_A 47 SQISAADLAPFTKLELLNLSSNVLYETLD--LESL-----STLRTLDLNNNYVQELLVG---PSIETLHAANNNISRVSC 116 (317)
T ss_dssp CCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTC-----TTCCEEECCSSEEEEEEEC---TTCCEEECCSSCCSEEEE
T ss_pred CcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhc-----CCCCEEECcCCccccccCC---CCcCEEECCCCccCCcCc
Confidence 34456789999999999999999886433 4444 5999999999998887743 799999999999998865
Q ss_pred ccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccC-CCCCCCcEEEecCCCCCCccCCccc-
Q 041067 574 CVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRI-FNLEFLTKLNLSGCSKLKRLPEISS- 651 (770)
Q Consensus 574 ~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i-~~l~~L~~L~L~~~~~l~~lp~~~~- 651 (770)
. .+++|+.|+++++..- .++ ...+.++++|++|++++|......|..+ ..+++|++|++++|. ++.+|....
T Consensus 117 ~--~~~~L~~L~l~~N~l~--~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l 190 (317)
T 3o53_A 117 S--RGQGKKNIYLANNKIT--MLR-DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVF 190 (317)
T ss_dssp C--CCSSCEEEECCSSCCC--SGG-GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCC
T ss_pred c--ccCCCCEEECCCCCCC--Ccc-chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccccccccc
Confidence 4 4789999999997632 222 2356778999999999998655555555 378999999999987 666666555
Q ss_pred cCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCC-cccCcccCCCCCCcEEEc
Q 041067 652 GNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNL-QRLPECLAQFSSPIILNL 730 (770)
Q Consensus 652 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~-~~lp~~l~~l~~L~~L~L 730 (770)
++|++|++++|.+..+|..+..+++|++|++++|.. ..+|..+..+++|+.|++++|... +.+|..+..+++|+.|++
T Consensus 191 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 191 AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (317)
T ss_dssp TTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCC-CEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHH
T ss_pred ccCCEEECCCCcCCcchhhhcccCcccEEECcCCcc-cchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEEC
Confidence 899999999999999999999999999999999975 578999999999999999999887 678889999999999998
Q ss_pred cCCC
Q 041067 731 AKTN 734 (770)
Q Consensus 731 ~~~~ 734 (770)
++++
T Consensus 270 ~~~~ 273 (317)
T 3o53_A 270 QTVK 273 (317)
T ss_dssp HHHH
T ss_pred CCch
Confidence 8543
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=1.5e-20 Score=198.60 Aligned_cols=240 Identities=19% Similarity=0.161 Sum_probs=175.9
Q ss_pred ccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCC--CCCCC--------CcccccccccCCCCcc-
Q 041067 501 FTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKS--LPSNL--------SAEKLMLLEVPDSDIE- 569 (770)
Q Consensus 501 ~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~--lp~~~--------~~~~L~~L~l~~~~i~- 569 (770)
++++++|+.|++++|.+ .+|..+. ..|+.|++.++.+.. +|..+ .+.+|++|++++|.+.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~-------~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 109 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFT-------DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG 109 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHH-------HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS
T ss_pred EccCCCceeEeeccccc--ccHHHHH-------HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccc
Confidence 45566777787877777 3443322 235555555555533 34333 3567888888888887
Q ss_pred cccccc--ccCcCCcEEccCcCcCccccCCCCCCCCCc-----cceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCC
Q 041067 570 QLWDCV--KHYRKLNQIIPAACNKLIAKTPNPMLMPRL-----NKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSK 642 (770)
Q Consensus 570 ~l~~~~--~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L-----~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~ 642 (770)
.+|..+ ..+++|++|+++++.. ...| ..+.++ ++|++|++++|......|..++.+++|++|++++|..
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~--~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 110 TAPPPLLEATGPDLNILNLRNVSW--ATRD--AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp CCCCCSSSCCSCCCSEEEEESCBC--SSSS--SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred hhHHHHHHhcCCCccEEEccCCCC--cchh--HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCc
Confidence 466665 7888888888888653 2333 233444 7889999998885555557888899999999999875
Q ss_pred CCc--cCCcc--c--cCccEEeccCcCccccC---cc-cccCCCCCEEeccCCCCCCCCC-cccCCCCCCcEEEeecCCC
Q 041067 643 LKR--LPEIS--S--GNISWLFLRETAIEELP---SS-IERLHRLGYLDLLDCKRLKSLP-RSLWMLKSLGVLNLSGCSN 711 (770)
Q Consensus 643 l~~--lp~~~--~--~~L~~L~l~~~~i~~lp---~~-i~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~ 711 (770)
.+. +|... . ++|++|++++|.+..+| .. +..+++|++|++++|...+..| ..+..+++|++|++++|..
T Consensus 186 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 265 (312)
T 1wwl_A 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265 (312)
T ss_dssp CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred CcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc
Confidence 543 22222 2 78999999999988444 33 3578999999999998766664 4566789999999999775
Q ss_pred CcccCcccCCCCCCcEEEccCCCCcccchhhhCCCCCcEEecccCc
Q 041067 712 LQRLPECLAQFSSPIILNLAKTNIERIPKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 712 ~~~lp~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~ 757 (770)
. .+|..+. ++|+.|++++|.++.+|. +..+++|+.|++++|+
T Consensus 266 ~-~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 266 K-QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp S-SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred C-hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 4 8888776 899999999999998887 8999999999999997
No 70
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=6.3e-18 Score=196.70 Aligned_cols=111 Identities=23% Similarity=0.244 Sum_probs=80.4
Q ss_pred cCccEEeccCcCcccc-CcccccCCCCCEEeccCCCCCC-CCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEE
Q 041067 652 GNISWLFLRETAIEEL-PSSIERLHRLGYLDLLDCKRLK-SLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILN 729 (770)
Q Consensus 652 ~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~ 729 (770)
.+++.++++.|.+..+ |..+..++.|+.|++++|.... ..|..+..+++|++|++++|...+..|..++++++|+.|+
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence 4555666666666643 3345667788888888776443 3566778888888888888877666677888888888888
Q ss_pred ccCCCCcccc-hhhhCCCCCcEEecccCccCCcCC
Q 041067 730 LAKTNIERIP-KSISQLLMLRYLLLSYSESLQSSP 763 (770)
Q Consensus 730 L~~~~l~~lp-~~l~~l~~L~~L~l~~c~~L~~lP 763 (770)
|++|.++.++ ..+..+++|+.|++++|+ ++.+|
T Consensus 525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~ 558 (635)
T 4g8a_A 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSK 558 (635)
T ss_dssp CTTSCCCBCCCGGGTTCTTCCEEECTTSC-CCBCC
T ss_pred CCCCcCCCCChhHHhCCCCCCEEECCCCc-CCCCC
Confidence 8888888665 457788888888888886 55444
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=9.8e-18 Score=173.71 Aligned_cols=206 Identities=19% Similarity=0.167 Sum_probs=107.1
Q ss_pred CCCCCCCCCcccccccccCCCCcccccc-ccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCc
Q 041067 546 LKSLPSNLSAEKLMLLEVPDSDIEQLWD-CVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPS 624 (770)
Q Consensus 546 l~~lp~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~ 624 (770)
+..+|..+. .+|++|++++|.+..++. .+..+++|++|++++|.. ..++. ..+.++++|++|++++|......|.
T Consensus 19 l~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 19 FYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIED-GAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp CSSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC--CEECT-TTTTTCTTCCEEECTTCCCCEECTT
T ss_pred ccccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcC--CccCH-HHccCCcCCCEEECCCCccCccChh
Confidence 334444332 345555555555555443 345555566666655432 12221 2345555666666666553333334
Q ss_pred cCCCCCCCcEEEecCCCCCCccCC-ccc--cCccEEeccCcCccc--cCcccccCCCCCEEeccCCCCCCCCCcccCCCC
Q 041067 625 RIFNLEFLTKLNLSGCSKLKRLPE-ISS--GNISWLFLRETAIEE--LPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLK 699 (770)
Q Consensus 625 ~i~~l~~L~~L~L~~~~~l~~lp~-~~~--~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~ 699 (770)
.+..+++|++|++++|. +..++. ... ++|++|++++|.+.. +|..+..+++|++|++++|...+..+..+..++
T Consensus 95 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 173 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (276)
T ss_dssp TTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred hhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh
Confidence 45556666666666654 222322 222 556666666666654 456666666666666666654433333444444
Q ss_pred CCc----EEEeecCCCCcccCcccCCCCCCcEEEccCCCCcccchh-hhCCCCCcEEecccCc
Q 041067 700 SLG----VLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIERIPKS-ISQLLMLRYLLLSYSE 757 (770)
Q Consensus 700 ~L~----~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~c~ 757 (770)
+|+ .|++++|... .+|.......+|+.|++++|.++.+|.. +..+++|+.|++++|+
T Consensus 174 ~L~~l~l~L~ls~n~l~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 174 QMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp TCTTCCEEEECCSSCCC-EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred hccccceeeecCCCccc-ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 444 5666665433 3333333334666666666666655543 3556666666666555
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=1.2e-17 Score=174.12 Aligned_cols=193 Identities=22% Similarity=0.226 Sum_probs=150.1
Q ss_pred CceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccc-cccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEe
Q 041067 534 GEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLW-DCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLN 612 (770)
Q Consensus 534 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~ 612 (770)
.+++.+++.++.++.+|..+. .+++.|++++|.+..++ ..+..+++|+.|+++++.. ..++. ...+++|++|+
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~---~~~l~~L~~L~ 83 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQV---DGTLPVLGTLD 83 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC--CEEEC---CSCCTTCCEEE
T ss_pred CCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc--CcccC---CCCCCcCCEEE
Confidence 489999999999999998764 78999999999998875 5688899999999998653 34443 26788899999
Q ss_pred ccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCC-ccc--cCccEEeccCcCccccCcc-cccCCCCCEEeccCCCCC
Q 041067 613 LRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPE-ISS--GNISWLFLRETAIEELPSS-IERLHRLGYLDLLDCKRL 688 (770)
Q Consensus 613 L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~~~--~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~ 688 (770)
+++|. +..+|..+..+++|++|++++|. ++.+|. .+. .+|++|++++|.+..+|.. +..+++|+.|++++|..
T Consensus 84 Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l- 160 (290)
T 1p9a_G 84 LSHNQ-LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL- 160 (290)
T ss_dssp CCSSC-CSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-
T ss_pred CCCCc-CCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC-
Confidence 99887 66888888889999999999886 455543 333 7788888888888877765 46788888888888774
Q ss_pred CCCCcc-cCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCc
Q 041067 689 KSLPRS-LWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIE 736 (770)
Q Consensus 689 ~~lp~~-l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~ 736 (770)
..+|.. +..+++|+.|++++|. +..+|..+..+++|+.|++++|++.
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CccCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCCcc
Confidence 445543 5678888888888755 4577777777788888888888765
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=1e-17 Score=176.28 Aligned_cols=192 Identities=19% Similarity=0.275 Sum_probs=117.0
Q ss_pred CceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEec
Q 041067 534 GEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNL 613 (770)
Q Consensus 534 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L 613 (770)
.+|+.|++.++.+..+|....+.+|++|++++|.+..++. +..+++|++|++++|. + ..++ .+.++++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l-~~~~---~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-L-KNVS---AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-C-SCCG---GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-C-CCch---hhcCCCCCCEEEC
Confidence 5788888888888877754446777777777777777766 6777777777777754 2 2222 4566677777777
Q ss_pred cCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc-cCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCC
Q 041067 614 RGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS-GNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLP 692 (770)
Q Consensus 614 ~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp 692 (770)
++|. +..+|. +..+++|++|++++|. +..+|.... ++|++|++++|.+..+|. +..+++|+.|++++|.. ..+|
T Consensus 115 ~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~ 189 (308)
T 1h6u_A 115 TSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI-SDIS 189 (308)
T ss_dssp TTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCG
T ss_pred CCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc-CcCh
Confidence 7766 444554 6667777777777765 344443222 556666666666665554 55566666666666553 2333
Q ss_pred cccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCcccc
Q 041067 693 RSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIERIP 739 (770)
Q Consensus 693 ~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp 739 (770)
. +..+++|++|++++|... .++ .+..+++|+.|++++|+++..|
T Consensus 190 ~-l~~l~~L~~L~L~~N~l~-~~~-~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 190 P-LASLPNLIEVHLKNNQIS-DVS-PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp G-GGGCTTCCEEECTTSCCC-BCG-GGTTCTTCCEEEEEEEEEECCC
T ss_pred h-hcCCCCCCEEEccCCccC-ccc-cccCCCCCCEEEccCCeeecCC
Confidence 2 555666666666655433 222 2555666666666666555444
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=9.2e-18 Score=188.19 Aligned_cols=212 Identities=15% Similarity=0.076 Sum_probs=175.7
Q ss_pred CCceeEEEEcCCCCCCCCC-CC-CcccccccccCCCCccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeE
Q 041067 533 FGEVKYLHWYGYPLKSLPS-NL-SAEKLMLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVL 610 (770)
Q Consensus 533 l~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~ 610 (770)
+++|++|++++|.+..+|+ .+ .+.+|++|++++|.+...+. +..+++|++|+|++|. + ..+| ..++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l-~~l~------~~~~L~~ 103 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-V-QELL------VGPSIET 103 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-E-EEEE------ECTTCCE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-C-CCCC------CCCCcCE
Confidence 3589999999999999874 44 47999999999999987765 8899999999999975 3 3333 3478999
Q ss_pred EeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc--cCccEEeccCcCccc-cCcccc-cCCCCCEEeccCCC
Q 041067 611 LNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS--GNISWLFLRETAIEE-LPSSIE-RLHRLGYLDLLDCK 686 (770)
Q Consensus 611 L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~l~~~~i~~-lp~~i~-~l~~L~~L~L~~~~ 686 (770)
|++++|.. ..+|.. .+++|++|++++|......|..+. ++|++|++++|.+.. .|..+. .+++|++|+|++|.
T Consensus 104 L~L~~N~l-~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNI-SRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCC-CCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcC-CCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 99999984 444432 578999999999986655565554 899999999999996 455665 79999999999998
Q ss_pred CCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCcccchhhhCCCCCcEEecccCccC
Q 041067 687 RLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIERIPKSISQLLMLRYLLLSYSESL 759 (770)
Q Consensus 687 ~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~L 759 (770)
.. .+|. ...+++|+.|++++|... .+|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|+..
T Consensus 181 l~-~~~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 181 IY-DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CC-EEEC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred cc-cccc-cccCCCCCEEECCCCCCC-CCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 54 4443 456999999999997654 5666799999999999999999999999999999999999999843
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=8.1e-17 Score=166.15 Aligned_cols=196 Identities=19% Similarity=0.255 Sum_probs=147.0
Q ss_pred ceeEEEEcCCCCCCCCCCCCcccccccccCCCCcccccc-ccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEec
Q 041067 535 EVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWD-CVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNL 613 (770)
Q Consensus 535 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L 613 (770)
..+.+++.++.++.+|..+. .+|+.|++++|.+..++. .+..+++|++|+++++.. ..+|. ..+.++++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~i~~-~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL--QTLPA-GIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC--SCCCT-TTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc--CeeCh-hhhcCCCCCCEEEC
Confidence 56788999999999987664 689999999999988875 578889999999988652 34443 24577888899999
Q ss_pred cCCCCCcccC-ccCCCCCCCcEEEecCCCCCCccCC-ccc--cCccEEeccCcCccccCcc-cccCCCCCEEeccCCCCC
Q 041067 614 RGSKSLKRLP-SRIFNLEFLTKLNLSGCSKLKRLPE-ISS--GNISWLFLRETAIEELPSS-IERLHRLGYLDLLDCKRL 688 (770)
Q Consensus 614 ~~~~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~-~~~--~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~ 688 (770)
++|. +..+| ..+..+++|++|++++|. +..+|. .+. ++|++|++++|.+..+|.. +..+++|++|++++|...
T Consensus 93 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 93 TDNK-LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp CSSC-CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCc-CCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 9887 44454 455778889999998876 444443 333 7888888888888887765 677888888888888754
Q ss_pred CCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCc
Q 041067 689 KSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIE 736 (770)
Q Consensus 689 ~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~ 736 (770)
...+..+..+++|++|++++|...+..+..+..+++|+.|++++|++.
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 444445778888888888887655444445778888888888888765
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=9.9e-18 Score=169.70 Aligned_cols=206 Identities=16% Similarity=0.263 Sum_probs=144.2
Q ss_pred CCCCCCCCCcccccccccCCCCcccccc-ccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccC-
Q 041067 546 LKSLPSNLSAEKLMLLEVPDSDIEQLWD-CVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLP- 623 (770)
Q Consensus 546 l~~lp~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp- 623 (770)
++.+|. -+.+|++|++++|++..++. .+..+++|+.|+++++..+ ..++. ..+.++++|++|++++|+.+..+|
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l-~~i~~-~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL-QQLES-HSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSC-CEECT-TTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCc-ceeCH-hHcCCCcCCcEEECCCCCCeeEcCH
Confidence 444554 23356666666666666655 4566777777777776433 33332 235566777777777733355555
Q ss_pred ccCCCCCCCcEEEecCCCCCCccCCccc-cCcc---EEeccCc-CccccCcc-cccCCCCC-EEeccCCCCCCCCCcccC
Q 041067 624 SRIFNLEFLTKLNLSGCSKLKRLPEISS-GNIS---WLFLRET-AIEELPSS-IERLHRLG-YLDLLDCKRLKSLPRSLW 696 (770)
Q Consensus 624 ~~i~~l~~L~~L~L~~~~~l~~lp~~~~-~~L~---~L~l~~~-~i~~lp~~-i~~l~~L~-~L~L~~~~~~~~lp~~l~ 696 (770)
..+..+++|++|++++|. ++.+|.... .+|+ +|++++| .+..+|.. +..+++|+ +|++++|.. ..+|....
T Consensus 99 ~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l-~~i~~~~~ 176 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAF 176 (239)
T ss_dssp TSEECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC-CEECTTTT
T ss_pred HHhCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC-cccCHhhc
Confidence 345677778888887776 455666333 5666 8888888 88877764 78889999 999999875 47777665
Q ss_pred CCCCCcEEEeecCCCCccc-CcccCCC-CCCcEEEccCCCCcccchhhhCCCCCcEEecccCccC
Q 041067 697 MLKSLGVLNLSGCSNLQRL-PECLAQF-SSPIILNLAKTNIERIPKSISQLLMLRYLLLSYSESL 759 (770)
Q Consensus 697 ~l~~L~~L~l~~~~~~~~l-p~~l~~l-~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~L 759 (770)
..++|+.|++++|..+..+ +..+..+ ++|+.|++++|+++.+|.. .+++|+.|++++|..|
T Consensus 177 ~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 177 NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC---
T ss_pred CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccCC
Confidence 5689999999998545555 4568888 9999999999999999875 7889999999998754
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=1.1e-17 Score=172.77 Aligned_cols=198 Identities=17% Similarity=0.119 Sum_probs=89.3
Q ss_pred CceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEec
Q 041067 534 GEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNL 613 (770)
Q Consensus 534 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L 613 (770)
.+|+.|.+.++.+..++....+.+|++|++++|.+..++ .+..+++|++|++++|.. ..++. ..+.++++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l--~~~~~-~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQL--QSLPN-GVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCC--CCCCT-TTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCcc--CccCh-hHhcCCcCCCEEEC
Confidence 356666666665555554333455555555555554432 344444555555544421 12211 12344444455555
Q ss_pred cCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccccCccEEeccCcCccccCcc-cccCCCCCEEeccCCCCCCCCC
Q 041067 614 RGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISSGNISWLFLRETAIEELPSS-IERLHRLGYLDLLDCKRLKSLP 692 (770)
Q Consensus 614 ~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp 692 (770)
++|......|..++.+++|++|++++ |.+..+|.. +..+++|++|++++|...+..|
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~----------------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAH----------------------NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCS----------------------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCcCCccCHHHhccCCCCCEEECCC----------------------CccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 44442222222234444444444444 444444332 3445555555555554333222
Q ss_pred cccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCcccchhhhCCCCCcEEecccCccCCcCC
Q 041067 693 RSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIERIPKSISQLLMLRYLLLSYSESLQSSP 763 (770)
Q Consensus 693 ~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~L~~lP 763 (770)
..+..+++|++|++++|...+..|..++.+++|+.|++++|++. +.+++|+.|++++|..-..+|
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBB
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCccc
Confidence 33444555555555554444433334455555555555555443 223344444444444333333
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=9.4e-17 Score=165.67 Aligned_cols=193 Identities=21% Similarity=0.225 Sum_probs=104.5
Q ss_pred CCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCC-CC-CcccccccccCCCCcccccccc-ccCcCCc
Q 041067 506 KLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPS-NL-SAEKLMLLEVPDSDIEQLWDCV-KHYRKLN 582 (770)
Q Consensus 506 ~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l~~~~-~~l~~L~ 582 (770)
+.+.++++++.+.. +|.. ++ .+++.|++.++.+..+|. .+ .+.+|++|++++|.+..++... ..+++|+
T Consensus 17 ~~~~l~~~~~~l~~-ip~~---~~----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~ 88 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSN---IP----ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88 (270)
T ss_dssp TTTEEECTTSCCSS-CCSC---CC----TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCC
T ss_pred CCCEEEccCCCCCc-cCCC---CC----CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCC
Confidence 34556666555553 3322 22 356666666666666654 23 3466666666666666665543 5566666
Q ss_pred EEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCc-cc--cCccEEec
Q 041067 583 QIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEI-SS--GNISWLFL 659 (770)
Q Consensus 583 ~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~-~~--~~L~~L~l 659 (770)
+|+++++.. ..+|. ..+.++++|++|++++|......|..++.+++|++|++++|. +..+|.. +. ++|++|++
T Consensus 89 ~L~l~~n~l--~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 89 TLWVTDNKL--QALPI-GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp EEECCSSCC--CCCCT-TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred EEECCCCcC--CcCCH-hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEe
Confidence 666666432 22221 234555666666666665333333345566666666666654 3444432 22 56666666
Q ss_pred cCcCccccCcc-cccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCC
Q 041067 660 RETAIEELPSS-IERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCS 710 (770)
Q Consensus 660 ~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 710 (770)
++|.+..+|.. +..+++|++|++++|...+..+..+..+++|+.|++++|.
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 66666655543 5556666666666665432222335556666666666654
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=1.3e-18 Score=183.83 Aligned_cols=224 Identities=20% Similarity=0.137 Sum_probs=176.0
Q ss_pred CceeEEEEcCCCCCCCCCCCCcccccccccCCCCccc--cccccc-------cCcCCcEEccCcCcCccccCCCCCCCCC
Q 041067 534 GEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQ--LWDCVK-------HYRKLNQIIPAACNKLIAKTPNPMLMPR 604 (770)
Q Consensus 534 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~--l~~~~~-------~l~~L~~L~L~~~~~l~~~~p~~~~~~~ 604 (770)
.+|+.|.+.++.+ .+|..+. ..|+.|+++++.+.. ++.... .+++|++|++++|..- ...|....+.+
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~ 119 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT-GTAPPPLLEAT 119 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB-SCCCCCSSSCC
T ss_pred CCceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc-chhHHHHHHhc
Confidence 4677788888888 7776443 349999999999864 454444 6899999999998643 45565222378
Q ss_pred ccceeEEeccCCCCCcccCccCCCC-----CCCcEEEecCCCCCCccCCccc--cCccEEeccCcCccc---cCccc--c
Q 041067 605 LNKLVLLNLRGSKSLKRLPSRIFNL-----EFLTKLNLSGCSKLKRLPEISS--GNISWLFLRETAIEE---LPSSI--E 672 (770)
Q Consensus 605 L~~L~~L~L~~~~~l~~lp~~i~~l-----~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~l~~~~i~~---lp~~i--~ 672 (770)
+++|++|+|++|.. ..+|..++.+ ++|++|++++|......|..+. ++|++|++++|.+.. +|..+ .
T Consensus 120 l~~L~~L~Ls~N~l-~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSW-ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBC-SSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCCC-cchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 99999999999984 4448777766 8999999999985444445554 899999999998653 45555 8
Q ss_pred cCCCCCEEeccCCCCCC--CCCc-ccCCCCCCcEEEeecCCCCcccC-cccCCCCCCcEEEccCCCCcccchhhhCCCCC
Q 041067 673 RLHRLGYLDLLDCKRLK--SLPR-SLWMLKSLGVLNLSGCSNLQRLP-ECLAQFSSPIILNLAKTNIERIPKSISQLLML 748 (770)
Q Consensus 673 ~l~~L~~L~L~~~~~~~--~lp~-~l~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L 748 (770)
.+++|++|++++|...+ .++. .+.++++|++|++++|...+..| ..+..+++|+.|++++|.++.+|..+. ++|
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L 276 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKL 276 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEE
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCc
Confidence 89999999999998542 3332 24578999999999988777665 456778999999999999999998876 899
Q ss_pred cEEecccCccCCcCCC
Q 041067 749 RYLLLSYSESLQSSPK 764 (770)
Q Consensus 749 ~~L~l~~c~~L~~lP~ 764 (770)
+.|++++|+ ++.+|.
T Consensus 277 ~~L~Ls~N~-l~~~p~ 291 (312)
T 1wwl_A 277 SVLDLSYNR-LDRNPS 291 (312)
T ss_dssp EEEECCSSC-CCSCCC
T ss_pred eEEECCCCC-CCCChh
Confidence 999999996 888876
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=6.1e-17 Score=167.30 Aligned_cols=200 Identities=21% Similarity=0.261 Sum_probs=158.0
Q ss_pred ccccccccCCCCccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEE
Q 041067 556 EKLMLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKL 635 (770)
Q Consensus 556 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L 635 (770)
.++..+++..+.+... .....+++|+.|+++++.. . .+..+.++++|++|++++|. +..++ .++.+++|++|
T Consensus 19 ~~l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i--~---~~~~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L 90 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA-VTQNELNSIDQIIANNSDI--K---SVQGIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYL 90 (272)
T ss_dssp HHHHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCC--C---CCTTGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEE
T ss_pred HHHHHHHhcCcccccc-cccccccceeeeeeCCCCc--c---cccccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEE
Confidence 4566677777766654 3356788899999988642 2 33357788899999999887 44454 57889999999
Q ss_pred EecCCCCCCccCCc-cc--cCccEEeccCcCccccCcc-cccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCC
Q 041067 636 NLSGCSKLKRLPEI-SS--GNISWLFLRETAIEELPSS-IERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSN 711 (770)
Q Consensus 636 ~L~~~~~l~~lp~~-~~--~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 711 (770)
++++|. ++.+|.. +. ++|++|++++|.+..+|.. +..+++|++|++++|...+..|..+..+++|++|++++|..
T Consensus 91 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 91 ILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp ECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCc
Confidence 999987 4555543 33 8899999999999988765 68999999999999986554455578999999999999887
Q ss_pred CcccCcccCCCCCCcEEEccCCCCcccchh-hhCCCCCcEEecccCccCCcCCC
Q 041067 712 LQRLPECLAQFSSPIILNLAKTNIERIPKS-ISQLLMLRYLLLSYSESLQSSPK 764 (770)
Q Consensus 712 ~~~lp~~l~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~c~~L~~lP~ 764 (770)
.+..+..++.+++|+.|++++|.++.+|.. +..+++|+.|++++|+.....|.
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 766666789999999999999999977754 68999999999999986665553
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=2e-17 Score=174.07 Aligned_cols=192 Identities=13% Similarity=0.195 Sum_probs=146.0
Q ss_pred ccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccccccccCcC
Q 041067 501 FTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDCVKHYRK 580 (770)
Q Consensus 501 ~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~ 580 (770)
+..+++|+.|++.++.+.. +| ++..+ .+|++|++++|.+..+|....+.+|++|++++|.+..++ .+..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l-----~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYL-----NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGC-----TTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTT
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhcc-----CCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch-hhcCCCC
Confidence 3457788888888887765 33 44444 488889998888888887445788889999988888875 5778888
Q ss_pred CcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc-cCccEEec
Q 041067 581 LNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS-GNISWLFL 659 (770)
Q Consensus 581 L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L~l 659 (770)
|+.|++++|.. ..++ .+.++++|++|++++|. +..+|. ++.+++|++|++++|. +..++.... ++|+.|++
T Consensus 109 L~~L~l~~n~l--~~~~---~l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l 180 (308)
T 1h6u_A 109 IKTLDLTSTQI--TDVT---PLAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKA 180 (308)
T ss_dssp CCEEECTTSCC--CCCG---GGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEEC
T ss_pred CCEEECCCCCC--CCch---hhcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCc-CCCChhhcCCCCCCEEEC
Confidence 99999888753 3333 36778888889998887 555555 7788889999998886 555655333 78889999
Q ss_pred cCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCC
Q 041067 660 RETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSN 711 (770)
Q Consensus 660 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 711 (770)
++|.+..+|. +..+++|++|++++|... .++ .+..+++|+.|++++|..
T Consensus 181 ~~n~l~~~~~-l~~l~~L~~L~L~~N~l~-~~~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 181 DDNKISDISP-LASLPNLIEVHLKNNQIS-DVS-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CSSCCCCCGG-GGGCTTCCEEECTTSCCC-BCG-GGTTCTTCCEEEEEEEEE
T ss_pred CCCccCcChh-hcCCCCCCEEEccCCccC-ccc-cccCCCCCCEEEccCCee
Confidence 8888888875 788888999999888754 444 378888899999888764
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=2.4e-16 Score=164.20 Aligned_cols=197 Identities=20% Similarity=0.203 Sum_probs=158.9
Q ss_pred ccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCC-CC-CcccccccccCCCCccccccccccC
Q 041067 501 FTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPS-NL-SAEKLMLLEVPDSDIEQLWDCVKHY 578 (770)
Q Consensus 501 ~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l~~~~~~l 578 (770)
++++++++.+++.++.+.. +|.++ + .+++.|++.+|.+..++. .+ .+.+|++|++++|.+..++.. ..+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~---~----~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l 76 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDL---P----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTL 76 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCC---C----TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCC---C----CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCC
Confidence 6788999999999888775 44433 3 588999999999988753 33 468999999999999988765 788
Q ss_pred cCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCcc-c--cCcc
Q 041067 579 RKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEIS-S--GNIS 655 (770)
Q Consensus 579 ~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~-~--~~L~ 655 (770)
++|+.|+++++. + ..+|. .+.++++|++|++++|......|..+..+++|++|++++|. ++.+|... . ++|+
T Consensus 77 ~~L~~L~Ls~N~-l-~~l~~--~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 77 PVLGTLDLSHNQ-L-QSLPL--LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLE 151 (290)
T ss_dssp TTCCEEECCSSC-C-SSCCC--CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCC
T ss_pred CcCCEEECCCCc-C-CcCch--hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCC
Confidence 999999999865 3 45554 56788999999999998444334668899999999999987 55565543 3 7899
Q ss_pred EEeccCcCccccCcc-cccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCC
Q 041067 656 WLFLRETAIEELPSS-IERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNL 712 (770)
Q Consensus 656 ~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~ 712 (770)
.|++++|.+..+|.. +..+++|++|++++|. +..+|..+..+++|+.|++++|+..
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCCcc
Confidence 999999999999876 4779999999999987 4588999999999999999987653
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=1e-16 Score=171.98 Aligned_cols=233 Identities=19% Similarity=0.233 Sum_probs=155.5
Q ss_pred ceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCC-C-CcccccccccCCCCcc-cccc-ccccCcCCcE
Q 041067 508 RFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSN-L-SAEKLMLLEVPDSDIE-QLWD-CVKHYRKLNQ 583 (770)
Q Consensus 508 r~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~l~~~~i~-~l~~-~~~~l~~L~~ 583 (770)
++++.+++.++. +|.++ + .+++.|++++|.++.+|.. | .+.+|++|++++|.+. .++. .+.++++|+.
T Consensus 12 ~~v~C~~~~Lt~-iP~~l---~----~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 12 RVFLCQESKVTE-IPSDL---P----RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp TEEEEESTTCCS-CCTTC---C----TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred CEEEecCCCCCc-cCcCc---C----CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 456666666664 44433 3 5778888888888888753 4 3678888888888764 3443 3567777776
Q ss_pred EccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCc-cCCCCCCCcEEEecCCCCCCccCCccc----cCccEEe
Q 041067 584 IIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPS-RIFNLEFLTKLNLSGCSKLKRLPEISS----GNISWLF 658 (770)
Q Consensus 584 L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~~~----~~L~~L~ 658 (770)
+...+++.+ ..++. ..+.++++|++|++++|. +..+|. ......++..|++.++..+..+|.... ..++.|+
T Consensus 84 ~l~~~~N~l-~~l~~-~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~ 160 (350)
T 4ay9_X 84 IRIEKANNL-LYINP-EAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW 160 (350)
T ss_dssp EEEEEETTC-CEECT-TSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred hhcccCCcc-cccCc-hhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhc
Confidence 666655555 44432 356677788888888776 444443 344556677778777777777765432 4577788
Q ss_pred ccCcCccccCcccccCCCCCEEeccCCCCCCCCCcc-cCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCC-CCc
Q 041067 659 LRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRS-LWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKT-NIE 736 (770)
Q Consensus 659 l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~-~l~ 736 (770)
+++|.++.+|......++|+.|.+.+|..++.+|.. +..+++|++|++++|. +..+|. +.+.+|+.|.+.++ +++
T Consensus 161 L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~--~~~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 161 LNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS--YGLENLKKLRARSTYNLK 237 (350)
T ss_dssp CCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCS--SSCTTCCEEECTTCTTCC
T ss_pred cccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccCh--hhhccchHhhhccCCCcC
Confidence 888888888777767777888888776667777753 5777888888888754 456665 23566667766544 366
Q ss_pred ccchhhhCCCCCcEEeccc
Q 041067 737 RIPKSISQLLMLRYLLLSY 755 (770)
Q Consensus 737 ~lp~~l~~l~~L~~L~l~~ 755 (770)
.+|. +.++++|+.+++.+
T Consensus 238 ~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 238 KLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CCCC-TTTCCSCCEEECSC
T ss_pred cCCC-chhCcChhhCcCCC
Confidence 7774 67778888887764
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=5.7e-16 Score=160.33 Aligned_cols=199 Identities=20% Similarity=0.140 Sum_probs=134.0
Q ss_pred CceeEEEEcCCCCCCCCC-CC-CcccccccccCCCCcccccc-ccccCcCCcEEccCcCcCccccCCCCCCCCCccceeE
Q 041067 534 GEVKYLHWYGYPLKSLPS-NL-SAEKLMLLEVPDSDIEQLWD-CVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVL 610 (770)
Q Consensus 534 ~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~ 610 (770)
.+|++|++++|.+..+|. .+ .+.+|++|++++|.+..++. .+..+++|++|+++++..- .++ ...+.++++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~-~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ--SLA-LGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC--EEC-TTTTTTCTTCCE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC--ccC-hhhhcCCccccE
Confidence 356666666666666654 23 35677777777777776654 4667777777777776432 222 124667777888
Q ss_pred EeccCCCCCcccCccCCCCCCCcEEEecCCCCCC-ccCCccc--cCccEEeccCcCccccCc-ccccCCCCC----EEec
Q 041067 611 LNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLK-RLPEISS--GNISWLFLRETAIEELPS-SIERLHRLG----YLDL 682 (770)
Q Consensus 611 L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~-~lp~~~~--~~L~~L~l~~~~i~~lp~-~i~~l~~L~----~L~L 682 (770)
|++++|......+..++.+++|++|++++|.... .+|.... ++|++|++++|.+..+|. .+..+++|+ +|++
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence 8888777444333357777888888888776433 2455554 778888888888877653 455555555 8888
Q ss_pred cCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCc
Q 041067 683 LDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIE 736 (770)
Q Consensus 683 ~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~ 736 (770)
++|.. ..+|.......+|+.|++++|...+..+..++.+++|+.|++++|++.
T Consensus 185 s~n~l-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 185 SLNPM-NFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CSSCC-CEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCCcc-cccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 88874 455555556668999999987755444445688999999999988877
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.68 E-value=5.9e-17 Score=170.85 Aligned_cols=196 Identities=20% Similarity=0.106 Sum_probs=141.4
Q ss_pred cccccccCCCCccc-ccccc--ccCcCCcEEccCcCcCccccCCCC--CCCCCccceeEEeccCCCCCcccCccCCCCCC
Q 041067 557 KLMLLEVPDSDIEQ-LWDCV--KHYRKLNQIIPAACNKLIAKTPNP--MLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEF 631 (770)
Q Consensus 557 ~L~~L~l~~~~i~~-l~~~~--~~l~~L~~L~L~~~~~l~~~~p~~--~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~ 631 (770)
+|++|++++|.+.. .|..+ ..+++|++|+++++..- ...+.. ..+..+++|++|+|++|......|..++.+++
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWA-TGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCS-STTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccccc-chhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 45555555555543 23333 55666666666665422 222211 12335778888888888865555567778888
Q ss_pred CcEEEecCCCCCCc--cCCcc--c--cCccEEeccCcCccccCcc----cccCCCCCEEeccCCCCCCCCCcccCCC---
Q 041067 632 LTKLNLSGCSKLKR--LPEIS--S--GNISWLFLRETAIEELPSS----IERLHRLGYLDLLDCKRLKSLPRSLWML--- 698 (770)
Q Consensus 632 L~~L~L~~~~~l~~--lp~~~--~--~~L~~L~l~~~~i~~lp~~----i~~l~~L~~L~L~~~~~~~~lp~~l~~l--- 698 (770)
|++|++++|...+. ++... . ++|++|++++|.++.+|.. +..+++|++|++++|...+..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 88888888875432 22111 1 6788889988888766653 5788999999999999777778777776
Q ss_pred CCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCcccchhhhCCCCCcEEecccCc
Q 041067 699 KSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIERIPKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 699 ~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~ 757 (770)
++|++|++++|... .+|..+. ++|+.|++++|.++.+|. +..+++|+.|++++|+
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCC
Confidence 69999999997655 8888774 899999999999998876 6889999999999997
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=8.5e-18 Score=179.45 Aligned_cols=223 Identities=19% Similarity=0.186 Sum_probs=153.7
Q ss_pred ceeEEEEcCCCCCCCC-CCCCcccccccccCCCCccc--cccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEE
Q 041067 535 EVKYLHWYGYPLKSLP-SNLSAEKLMLLEVPDSDIEQ--LWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLL 611 (770)
Q Consensus 535 ~Lr~L~l~~~~l~~lp-~~~~~~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L 611 (770)
+++.|++.++.+...+ ..+.+.+|++|++++|.+.. ++..+..+++|++|++++|..- ...|. .+.++++|++|
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~-~~~~~--~l~~~~~L~~L 147 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS-DPIVN--TLAKNSNLVRL 147 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC-HHHHH--HHTTCTTCSEE
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC-HHHHH--HHhcCCCCCEE
Confidence 4444444444444332 23445778888888887763 6777888899999999987522 23332 45668889999
Q ss_pred eccCCCCCc--ccCccCCCCCCCcEEEecCCCCCCc--cCCccc--c-CccEEeccCcCc----cccCcccccCCCCCEE
Q 041067 612 NLRGSKSLK--RLPSRIFNLEFLTKLNLSGCSKLKR--LPEISS--G-NISWLFLRETAI----EELPSSIERLHRLGYL 680 (770)
Q Consensus 612 ~L~~~~~l~--~lp~~i~~l~~L~~L~L~~~~~l~~--lp~~~~--~-~L~~L~l~~~~i----~~lp~~i~~l~~L~~L 680 (770)
++++|..+. .+|..+..+++|++|++++|..++. ++.... + +|++|++++|.+ ..+|..+..+++|++|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 999985454 3676677889999999999844553 454444 6 899999999854 4678888899999999
Q ss_pred eccCCC-CCCCCCcccCCCCCCcEEEeecCCCC-cccCcccCCCCCCcEEEccCCCCcc-cchhhhCCCCCcEEecccCc
Q 041067 681 DLLDCK-RLKSLPRSLWMLKSLGVLNLSGCSNL-QRLPECLAQFSSPIILNLAKTNIER-IPKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 681 ~L~~~~-~~~~lp~~l~~l~~L~~L~l~~~~~~-~~lp~~l~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~l~~c~ 757 (770)
++++|. .....+..+.++++|++|++++|... ......++.+++|+.|++++| ++. .-..+. .+|..|++++|.
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~ 304 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSH 304 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCC
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEeccc
Confidence 999998 44566778889999999999998522 222235788999999999999 441 111222 235555677776
Q ss_pred cCCcCC
Q 041067 758 SLQSSP 763 (770)
Q Consensus 758 ~L~~lP 763 (770)
--...|
T Consensus 305 l~~~~~ 310 (336)
T 2ast_B 305 FTTIAR 310 (336)
T ss_dssp SCCTTC
T ss_pred CccccC
Confidence 333344
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.67 E-value=2.7e-18 Score=187.07 Aligned_cols=228 Identities=15% Similarity=0.129 Sum_probs=120.7
Q ss_pred cccccCCCCCceEEEecCCCCCCccC----CccCCCCCCCCceeEEEEcCCCCCCCCCC----C--------Cccccccc
Q 041067 498 PSTFTKMPKLRFLKFYSSSFNGENKC----KISYLQDPGFGEVKYLHWYGYPLKSLPSN----L--------SAEKLMLL 561 (770)
Q Consensus 498 ~~~~~~l~~Lr~L~l~~~~l~~~~p~----~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~----~--------~~~~L~~L 561 (770)
...+..+++|+.|++++|.+.+..+. .+..+ ++|++|++++|.+..+... + .+.+|++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-----~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK-----KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTC-----TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhC-----CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 45567788899999998877764222 23333 4788888887766544321 1 23455555
Q ss_pred ccCCCCccc-----cccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCc----ccCccCCCC---
Q 041067 562 EVPDSDIEQ-----LWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLK----RLPSRIFNL--- 629 (770)
Q Consensus 562 ~l~~~~i~~-----l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~----~lp~~i~~l--- 629 (770)
++++|.+.. ++..+..+++|++|+|++ |.... .++..+..+
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~---------------------------n~l~~~~~~~l~~~l~~l~~~ 152 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN---------------------------NGLGPQAGAKIARALQELAVN 152 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCS---------------------------SCCHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcC---------------------------CCCCHHHHHHHHHHHHHHhhh
Confidence 555555443 344444445555555554 44211 111112122
Q ss_pred ------CCCcEEEecCCCCC-CccCC---ccc--cCccEEeccCcCcc------ccCcccccCCCCCEEeccCCCCC---
Q 041067 630 ------EFLTKLNLSGCSKL-KRLPE---ISS--GNISWLFLRETAIE------ELPSSIERLHRLGYLDLLDCKRL--- 688 (770)
Q Consensus 630 ------~~L~~L~L~~~~~l-~~lp~---~~~--~~L~~L~l~~~~i~------~lp~~i~~l~~L~~L~L~~~~~~--- 688 (770)
++|++|++++|... ..+|. ... ++|++|++++|.+. -+|..+..+++|++|+|++|...
T Consensus 153 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g 232 (386)
T 2ca6_A 153 KKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG 232 (386)
T ss_dssp HHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH
T ss_pred hhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH
Confidence 45555555554422 12221 111 34555555555554 22335556666666666666542
Q ss_pred -CCCCcccCCCCCCcEEEeecCCCCcc----cCccc--CCCCCCcEEEccCCCCcc-----cchhh-hCCCCCcEEeccc
Q 041067 689 -KSLPRSLWMLKSLGVLNLSGCSNLQR----LPECL--AQFSSPIILNLAKTNIER-----IPKSI-SQLLMLRYLLLSY 755 (770)
Q Consensus 689 -~~lp~~l~~l~~L~~L~l~~~~~~~~----lp~~l--~~l~~L~~L~L~~~~l~~-----lp~~l-~~l~~L~~L~l~~ 755 (770)
..+|..+..+++|++|++++|..... +|..+ +.+++|+.|+|++|.++. +|..+ .++++|+.|++++
T Consensus 233 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 233 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 44555566666666666666554433 34444 336666666666666664 66555 4466666666666
Q ss_pred Cc
Q 041067 756 SE 757 (770)
Q Consensus 756 c~ 757 (770)
|+
T Consensus 313 N~ 314 (386)
T 2ca6_A 313 NR 314 (386)
T ss_dssp SB
T ss_pred Cc
Confidence 65
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=5.5e-16 Score=161.65 Aligned_cols=187 Identities=21% Similarity=0.223 Sum_probs=130.6
Q ss_pred ccccccccCCCCccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEE
Q 041067 556 EKLMLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKL 635 (770)
Q Consensus 556 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L 635 (770)
.++..+.+..+.+..+. ....+++|+.|++++|.. ..++ .+..+++|++|++++|. +..++. +..+++|++|
T Consensus 24 ~~~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i--~~~~---~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L 95 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDI--KSVQ---GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWL 95 (291)
T ss_dssp HHHHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSCC--CCCT---TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred HHHHHHHhcCCCccccc-chhhcCcccEEEccCCCc--ccCh---hHhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEE
Confidence 44555566666555432 234677778888877642 2333 45667778888888776 445555 7778888888
Q ss_pred EecCCCCCCccCCccc-cCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcc
Q 041067 636 NLSGCSKLKRLPEISS-GNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQR 714 (770)
Q Consensus 636 ~L~~~~~l~~lp~~~~-~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~ 714 (770)
++++|. ++.+|.... ++|++|++++|.+..++ .+..+++|++|++++|...+ + ..+..+++|++|++++|...+
T Consensus 96 ~l~~n~-l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~- 170 (291)
T 1h6t_A 96 FLDENK-VKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISD- 170 (291)
T ss_dssp ECCSSC-CCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC-
T ss_pred ECCCCc-CCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCcccc-
Confidence 888776 555665444 77888888888887764 57778888888888876533 3 457788888888888876544
Q ss_pred cCcccCCCCCCcEEEccCCCCcccchhhhCCCCCcEEecccCc
Q 041067 715 LPECLAQFSSPIILNLAKTNIERIPKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 715 lp~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~ 757 (770)
++. +..+++|+.|++++|.++.+|. +..+++|+.|++++|+
T Consensus 171 ~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 171 IVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred chh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence 333 7788888888888888887764 7788888888888876
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=6.7e-16 Score=156.17 Aligned_cols=197 Identities=15% Similarity=0.162 Sum_probs=157.5
Q ss_pred cccccCCCCccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCc-cCCCCCCCcEEEe
Q 041067 559 MLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPS-RIFNLEFLTKLNL 637 (770)
Q Consensus 559 ~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L 637 (770)
..+.+..+++..+|. + .++|+.|+++++.. ..+|. ..+.++++|++|++++|..+..+|. .+..+++|++|++
T Consensus 14 ~~~~v~c~~l~~ip~-~--~~~l~~L~l~~n~l--~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l 87 (239)
T 2xwt_C 14 EDFRVTCKDIQRIPS-L--PPSTQTLKLIETHL--RTIPS-HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI 87 (239)
T ss_dssp STTEEEECSCSSCCC-C--CTTCCEEEEESCCC--SEECT-TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEE
T ss_pred CcceeEccCccccCC-C--CCcccEEEEeCCcc--eEECH-HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEEC
Confidence 444555555778887 3 34899999999763 44443 3577899999999999975677765 6789999999999
Q ss_pred cCCCCCCccCCcc-c--cCccEEeccCcCccccCcccccCCCCC---EEeccCCCCCCCCCc-ccCCCCCCc-EEEeecC
Q 041067 638 SGCSKLKRLPEIS-S--GNISWLFLRETAIEELPSSIERLHRLG---YLDLLDCKRLKSLPR-SLWMLKSLG-VLNLSGC 709 (770)
Q Consensus 638 ~~~~~l~~lp~~~-~--~~L~~L~l~~~~i~~lp~~i~~l~~L~---~L~L~~~~~~~~lp~-~l~~l~~L~-~L~l~~~ 709 (770)
++|..++.+|... . ++|++|++++|.+..+|. +..+++|+ +|++++|.....+|. .+..+++|+ +|++++|
T Consensus 88 ~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 88 RNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp EEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred CCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence 9955577887543 2 799999999999999997 88888888 999999944566665 588999999 9999997
Q ss_pred CCCcccCcccCCCCCCcEEEccCCC-Ccccch-hhhCC-CCCcEEecccCccCCcCCC
Q 041067 710 SNLQRLPECLAQFSSPIILNLAKTN-IERIPK-SISQL-LMLRYLLLSYSESLQSSPK 764 (770)
Q Consensus 710 ~~~~~lp~~l~~l~~L~~L~L~~~~-l~~lp~-~l~~l-~~L~~L~l~~c~~L~~lP~ 764 (770)
... .+|......++|+.|++++|. ++.+|. .+..+ ++|+.|++++|+ ++.+|.
T Consensus 167 ~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~ 222 (239)
T 2xwt_C 167 GFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPS 222 (239)
T ss_dssp CCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCC
T ss_pred CCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCCh
Confidence 654 777655445899999999995 998864 57888 999999999987 788875
No 90
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.65 E-value=1.2e-15 Score=172.50 Aligned_cols=186 Identities=23% Similarity=0.321 Sum_probs=150.9
Q ss_pred ceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEecc
Q 041067 535 EVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLR 614 (770)
Q Consensus 535 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~ 614 (770)
+++.|++.++.++.+|..+. .+|++|++++|.+..+| ..+++|+.|++++|. + ..+|. +++ +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~-~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l-~~ip~---l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP-PQITVLEITQNALISLP---ELPASLEYLDACDNR-L-STLPE---LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC-TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-C-SCCCC---CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhHc-CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-C-CCcch---hhc--CCCEEECC
Confidence 78999999999999998663 78999999999999988 557899999999975 3 44665 333 89999999
Q ss_pred CCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccccCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCcc
Q 041067 615 GSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISSGNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRS 694 (770)
Q Consensus 615 ~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~ 694 (770)
+|. +..+|. .+++|++|++++|. ++.+|. ..++|++|++++|.+..+|. +. ++|+.|++++|.. ..+|.
T Consensus 129 ~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~-~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L-~~lp~- 197 (571)
T 3cvr_A 129 NNQ-LTMLPE---LPALLEYINADNNQ-LTMLPE-LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLL-ESLPA- 197 (571)
T ss_dssp SSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC-CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCC-SSCCC-
T ss_pred CCc-CCCCCC---cCccccEEeCCCCc-cCcCCC-cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCC-Cchhh-
Confidence 987 555887 68899999999987 566887 33789999999999999988 65 8999999999874 47787
Q ss_pred cCCCCCC-------cEEEeecCCCCcccCcccCCCCCCcEEEccCCCCc-ccchhhhCC
Q 041067 695 LWMLKSL-------GVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIE-RIPKSISQL 745 (770)
Q Consensus 695 l~~l~~L-------~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~-~lp~~l~~l 745 (770)
+.. +| +.|++++|. +..+|..+..+++|+.|+|++|+++ .+|..+..+
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred HHH--hhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 554 67 999999865 4578988888999999999999988 667666554
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=9.8e-16 Score=175.23 Aligned_cols=187 Identities=22% Similarity=0.240 Sum_probs=99.8
Q ss_pred ccccccccCCCCccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEE
Q 041067 556 EKLMLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKL 635 (770)
Q Consensus 556 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L 635 (770)
.++..+.+..+.+..+.. ...+++|+.|++++|.. ..+| .+.++++|+.|+|++|. +..+|+ +..+++|+.|
T Consensus 21 ~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i--~~l~---~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L 92 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDI--KSVQ---GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCC--CCCT---TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEE
T ss_pred HHHHHHhccCCCcccccc-hhcCCCCCEEECcCCCC--CCCh---HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEE
Confidence 344444555544444322 34455555555555431 2222 34555556666666555 333443 5555666666
Q ss_pred EecCCCCCCccCCccc-cCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcc
Q 041067 636 NLSGCSKLKRLPEISS-GNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQR 714 (770)
Q Consensus 636 ~L~~~~~l~~lp~~~~-~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~ 714 (770)
+|++|. +..+|.... ++|+.|+|++|.+..+| .+..+++|+.|+|++|...+ + ..+..+++|+.|+|++|...+.
T Consensus 93 ~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 93 FLDENK-IKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp ECCSSC-CCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCC
T ss_pred ECcCCC-CCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCc
Confidence 666554 344443333 55666666666665543 35566666666666665332 2 3455666666666666554433
Q ss_pred cCcccCCCCCCcEEEccCCCCcccchhhhCCCCCcEEecccCc
Q 041067 715 LPECLAQFSSPIILNLAKTNIERIPKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 715 lp~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~ 757 (770)
.| +..+++|+.|+|++|.++.+| .+..|++|+.|+|++|+
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEE
T ss_pred hh--hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCc
Confidence 33 566666666666666666554 35566666666666665
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.64 E-value=1.7e-15 Score=171.37 Aligned_cols=188 Identities=19% Similarity=0.213 Sum_probs=157.5
Q ss_pred CCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccccccccCcCCcEEc
Q 041067 506 KLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDCVKHYRKLNQII 585 (770)
Q Consensus 506 ~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~ 585 (770)
+|+.|++++|.+.+ +|..+ . ++|++|++++|.++.+| -.+.+|++|++++|.+..+|. +.. +|+.|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l---~----~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL---P----PQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC---C----TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEE
T ss_pred CccEEEeCCCCCCc-cCHhH---c----CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEE
Confidence 89999999999887 66544 2 58999999999999999 346899999999999999888 554 999999
Q ss_pred cCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccccCccEEeccCcCcc
Q 041067 586 PAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISSGNISWLFLRETAIE 665 (770)
Q Consensus 586 L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~l~~~~i~ 665 (770)
+++|.. ..+|. .+++|++|+|++|. +..+|. .+++|++|++++|. ++.+|. +..+|+.|++++|.+.
T Consensus 127 Ls~N~l--~~lp~-----~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 127 VDNNQL--TMLPE-----LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQ-LTFLPE-LPESLEALDVSTNLLE 193 (571)
T ss_dssp CCSSCC--SCCCC-----CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC-CCTTCCEEECCSSCCS
T ss_pred CCCCcC--CCCCC-----cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCC-CCCcch-hhCCCCEEECcCCCCC
Confidence 999753 44664 57899999999998 556887 57899999999987 666888 4589999999999999
Q ss_pred ccCcccccCCCC-------CEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCC
Q 041067 666 ELPSSIERLHRL-------GYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFS 723 (770)
Q Consensus 666 ~lp~~i~~l~~L-------~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~ 723 (770)
.+|. +.. +| +.|++++|.. ..+|..+.++++|+.|++++|...+.+|..++.++
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCC-CCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred chhh-HHH--hhhcccccceEEecCCCcc-eecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 9998 654 77 9999999874 57999999999999999999999888888776543
No 93
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.64 E-value=3.8e-15 Score=173.10 Aligned_cols=245 Identities=17% Similarity=0.155 Sum_probs=177.8
Q ss_pred ccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCCCCcccccccccCCCCcccc---cccccc
Q 041067 501 FTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQL---WDCVKH 577 (770)
Q Consensus 501 ~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l---~~~~~~ 577 (770)
+..+.+|+.|++.++.+.+. +...+..|+.+.+.++.....+....+.+|+.|++++|.+... +.....
T Consensus 324 ~~~~~~L~~L~l~~~~~~~~--------~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 395 (635)
T 4g8a_A 324 FSYNFGWQHLELVNCKFGQF--------PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 395 (635)
T ss_dssp GGSCCCCSEEEEESCEESSC--------CCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHS
T ss_pred cccchhhhhhhcccccccCc--------CcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhh
Confidence 55667888888888766542 1223357888888888877777777778899999988887643 344567
Q ss_pred CcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccC-ccCCCCCCCcEEEecCCCCCCccCCccc--cCc
Q 041067 578 YRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLP-SRIFNLEFLTKLNLSGCSKLKRLPEISS--GNI 654 (770)
Q Consensus 578 l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~~~--~~L 654 (770)
+.+|+.+++..+... . .+ ..+..+.+|+.+++.++......+ ..+..+++|+.+++++|......|.... .+|
T Consensus 396 ~~~L~~L~~~~~~~~-~-~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L 471 (635)
T 4g8a_A 396 TISLKYLDLSFNGVI-T-MS--SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471 (635)
T ss_dssp CSCCCEEECCSCSEE-E-EC--SCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred hhhhhhhhccccccc-c-cc--ccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh
Confidence 778888888876543 2 22 245667888888888776544443 3456788888888888775444444443 788
Q ss_pred cEEeccCcCcc--ccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccC
Q 041067 655 SWLFLRETAIE--ELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAK 732 (770)
Q Consensus 655 ~~L~l~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~ 732 (770)
+.|++++|.+. ..|..+..+++|+.|+|++|...+..|..+.++++|++|+|++|...+..|..++.+++|+.|+|++
T Consensus 472 ~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 551 (635)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence 88888887644 3667788888888888888876666677788888888888888776666667788888888888888
Q ss_pred CCCccc-chhhhCC-CCCcEEecccCc
Q 041067 733 TNIERI-PKSISQL-LMLRYLLLSYSE 757 (770)
Q Consensus 733 ~~l~~l-p~~l~~l-~~L~~L~l~~c~ 757 (770)
|+++.+ |..+..+ ++|+.|++++|+
T Consensus 552 N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 552 NHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp SCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 888855 4566676 578888888776
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=5.7e-15 Score=150.50 Aligned_cols=174 Identities=22% Similarity=0.238 Sum_probs=100.1
Q ss_pred ceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEecc
Q 041067 535 EVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLR 614 (770)
Q Consensus 535 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~ 614 (770)
..+.+++.++.+..+|..+. .+++.|++++|.+..++. ..+.++++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~--------------------------~~~~~l~~L~~L~L~ 67 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSD--------------------------ATFRGLTKLTWLNLD 67 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCT--------------------------TTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCH--------------------------hHhcCcccCCEEECC
Confidence 34556666666666665443 355555555555544432 123445555555555
Q ss_pred CCCCCcccCccCCCCCCCcEEEecCCCCCCccCC-ccc--cCccEEeccCcCccccCcc-cccCCCCCEEeccCCCCCCC
Q 041067 615 GSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPE-ISS--GNISWLFLRETAIEELPSS-IERLHRLGYLDLLDCKRLKS 690 (770)
Q Consensus 615 ~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~~~--~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~ 690 (770)
+|......|..+..+++|++|++++|. ++.+|. .+. ++|++|++++|.+..+|.. +..+++|++|++++|...+.
T Consensus 68 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 68 YNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc
Confidence 554333333334555555555555554 233332 222 4556666666666666654 46677777777777764433
Q ss_pred CCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCc
Q 041067 691 LPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIE 736 (770)
Q Consensus 691 lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~ 736 (770)
.|..+..+++|++|++++|...+..+..+..+++|+.|++++|++.
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 3335777777777777776655555556777777778887777765
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=4.2e-15 Score=159.38 Aligned_cols=218 Identities=22% Similarity=0.276 Sum_probs=87.3
Q ss_pred EEcCCCCCCCCCCCCcccccccccCCCCccccccc-cccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCC
Q 041067 540 HWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDC-VKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKS 618 (770)
Q Consensus 540 ~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~ 618 (770)
..+++.++++|..+ +.++++|++++|+++.++.. +.++++|++|+|+++..+ ..+|. ..+.++++|..+...+++.
T Consensus 15 ~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~-~~i~~-~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 15 LCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL-EVIEA-DVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC-CEECT-TSBCSCTTCCEEEEEEETT
T ss_pred EecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC-CccCh-hHhhcchhhhhhhcccCCc
Confidence 33444444444433 23444444444444444432 344444444444444332 22221 1233343333322222222
Q ss_pred Cccc-CccCCCCCCCcEEEecCCCCCCccCCccc---cCccEEeccC-cCccccCcc-cccC-CCCCEEeccCCCCCCCC
Q 041067 619 LKRL-PSRIFNLEFLTKLNLSGCSKLKRLPEISS---GNISWLFLRE-TAIEELPSS-IERL-HRLGYLDLLDCKRLKSL 691 (770)
Q Consensus 619 l~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~~~---~~L~~L~l~~-~~i~~lp~~-i~~l-~~L~~L~L~~~~~~~~l 691 (770)
+..+ |..+..+++|++|++++|. +..+|.... .++..|++.+ +.+..+|.. +..+ ..++.|++++|. +..+
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i 169 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEI 169 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEE
T ss_pred ccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCC
Confidence 3333 2233444444444444443 233332211 2333344322 334444332 2222 234444444443 2334
Q ss_pred CcccCCCCCCcEEEeecCCCCcccCc-ccCCCCCCcEEEccCCCCcccchhhhCCCCCcEEecccCccCCcCCC
Q 041067 692 PRSLWMLKSLGVLNLSGCSNLQRLPE-CLAQFSSPIILNLAKTNIERIPKSISQLLMLRYLLLSYSESLQSSPK 764 (770)
Q Consensus 692 p~~l~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~L~~lP~ 764 (770)
|.......+|++|++++++.++.+|. .++.+++|+.|++++|.++.+|.. .+.+|+.|.+.+|.+++++|.
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC
Confidence 44444444444444444444444443 234444444444444444444432 233444444444444444443
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=9.2e-15 Score=148.94 Aligned_cols=173 Identities=17% Similarity=0.129 Sum_probs=136.4
Q ss_pred cCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc--cCccE
Q 041067 579 RKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS--GNISW 656 (770)
Q Consensus 579 ~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~ 656 (770)
...+.++++++. + ..+|. .++ .+|+.|+|++|......|..+..+++|++|++++|......|..+. ++|++
T Consensus 14 ~~~~~l~~~~~~-l-~~~p~--~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 87 (251)
T 3m19_A 14 EGKKEVDCQGKS-L-DSVPS--GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT 87 (251)
T ss_dssp GGGTEEECTTCC-C-SSCCS--CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCeEEecCCCC-c-cccCC--CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCE
Confidence 345556666532 2 34443 222 5789999999986665566788999999999999875444444333 89999
Q ss_pred EeccCcCccccCcc-cccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCC
Q 041067 657 LFLRETAIEELPSS-IERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNI 735 (770)
Q Consensus 657 L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l 735 (770)
|++++|.+..+|.. +..+++|++|++++|...+..+..+..+++|++|++++|...+..+..++.+++|+.|+|++|.+
T Consensus 88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence 99999999988854 68999999999999986544444578999999999999876555555799999999999999999
Q ss_pred cccch-hhhCCCCCcEEecccCc
Q 041067 736 ERIPK-SISQLLMLRYLLLSYSE 757 (770)
Q Consensus 736 ~~lp~-~l~~l~~L~~L~l~~c~ 757 (770)
+.+|. .+..+++|+.|++++|+
T Consensus 168 ~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 168 QSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp SCCCTTTTTTCTTCCEEECCSCC
T ss_pred CccCHHHHhCCCCCCEEEeeCCc
Confidence 98775 67899999999999998
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=9e-16 Score=150.23 Aligned_cols=150 Identities=16% Similarity=0.180 Sum_probs=116.3
Q ss_pred CCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc-cCccEEeccCcCccc-cCcccccCCCCCEE
Q 041067 603 PRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS-GNISWLFLRETAIEE-LPSSIERLHRLGYL 680 (770)
Q Consensus 603 ~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L 680 (770)
..+++|++|++++|. +..+| .+..+++|++|++++| .+..++.... ++|++|++++|.+.. .|..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 345566666666665 44555 4666677777777776 3455543333 667777777777774 67788899999999
Q ss_pred eccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCcccchhhhCCCCCcEEecccCc
Q 041067 681 DLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIERIPKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 681 ~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~ 757 (770)
++++|...+..|..+..+++|++|++++|...+.+| .+..+++|+.|++++|.++.++ .+..+++|+.|++++|+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 999998777778889999999999999987677777 6889999999999999999888 68899999999999987
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=9.9e-17 Score=171.15 Aligned_cols=198 Identities=17% Similarity=0.153 Sum_probs=163.8
Q ss_pred ccccccccCCCCccccccccccCcCCcEEccCcCcCcccc-CCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcE
Q 041067 556 EKLMLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAK-TPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTK 634 (770)
Q Consensus 556 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~-~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 634 (770)
.+++.|+++++.+...+..+..+++|++|++++|..- .. +|. .+.++++|++|++++|......|..++.+++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~-~~~~~~--~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE-VSTLHG--ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEEC-HHHHHH--HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcC-HHHHHH--HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence 6899999999999988888889999999999998622 22 332 4567899999999999866678888889999999
Q ss_pred EEecCCCCCCc--cCCccc--cCccEEeccCc-Cccc--cCcccccCC-CCCEEeccCCC--CC-CCCCcccCCCCCCcE
Q 041067 635 LNLSGCSKLKR--LPEISS--GNISWLFLRET-AIEE--LPSSIERLH-RLGYLDLLDCK--RL-KSLPRSLWMLKSLGV 703 (770)
Q Consensus 635 L~L~~~~~l~~--lp~~~~--~~L~~L~l~~~-~i~~--lp~~i~~l~-~L~~L~L~~~~--~~-~~lp~~l~~l~~L~~ 703 (770)
|++++|..++. +|.... ++|++|++++| .+.. +|..+..++ +|++|++++|. .. +.+|..+.++++|++
T Consensus 147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~ 226 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226 (336)
T ss_dssp EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE
T ss_pred EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCE
Confidence 99999965653 565444 89999999999 8884 788889999 99999999994 33 456777888999999
Q ss_pred EEeecCC-CCcccCcccCCCCCCcEEEccCCC-Cc-ccchhhhCCCCCcEEecccC
Q 041067 704 LNLSGCS-NLQRLPECLAQFSSPIILNLAKTN-IE-RIPKSISQLLMLRYLLLSYS 756 (770)
Q Consensus 704 L~l~~~~-~~~~lp~~l~~l~~L~~L~L~~~~-l~-~lp~~l~~l~~L~~L~l~~c 756 (770)
|++++|. ..+..+..+..+++|+.|++++|. +. .....+.++++|+.|++++|
T Consensus 227 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred EeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 9999998 455777889999999999999995 33 22235788999999999999
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=161.11 Aligned_cols=194 Identities=16% Similarity=0.093 Sum_probs=146.7
Q ss_pred CceeEEEEcCCCCCC-CCCC---CCcccccccccCCCCccccc-----cccccCcCCcEEccCcCcCccccCCCCCCCCC
Q 041067 534 GEVKYLHWYGYPLKS-LPSN---LSAEKLMLLEVPDSDIEQLW-----DCVKHYRKLNQIIPAACNKLIAKTPNPMLMPR 604 (770)
Q Consensus 534 ~~Lr~L~l~~~~l~~-lp~~---~~~~~L~~L~l~~~~i~~l~-----~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~ 604 (770)
.+|++|++.+|.+.. .|.. ..+.+|++|++++|.+.... ..+..+++|++|++++|... .++ ...+.+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~-~~~~~~ 167 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP--AFS-CEQVRA 167 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC--CCC-TTSCCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc--hhh-HHHhcc
Confidence 357888888887764 4444 34688888888888887521 23457889999999987642 332 236778
Q ss_pred ccceeEEeccCCCCCcc--cC--ccCCCCCCCcEEEecCCCCCCccCCc----cc--cCccEEeccCcCcccc-Cccccc
Q 041067 605 LNKLVLLNLRGSKSLKR--LP--SRIFNLEFLTKLNLSGCSKLKRLPEI----SS--GNISWLFLRETAIEEL-PSSIER 673 (770)
Q Consensus 605 L~~L~~L~L~~~~~l~~--lp--~~i~~l~~L~~L~L~~~~~l~~lp~~----~~--~~L~~L~l~~~~i~~l-p~~i~~ 673 (770)
+++|++|+|++|..... ++ ..++.+++|++|++++|. ++.+|.. .. ++|++|++++|.+..+ |..+..
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 246 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR 246 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh
Confidence 89999999999985432 33 334688999999999987 5555542 12 7899999999999976 777777
Q ss_pred C---CCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCc
Q 041067 674 L---HRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIE 736 (770)
Q Consensus 674 l---~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~ 736 (770)
+ ++|++|++++|... .+|..+. ++|++|++++|... .+|. +..+++|+.|++++|+++
T Consensus 247 ~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~-~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 247 CMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN-RAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC-SCCC-TTSCCCCSCEECSSTTTS
T ss_pred ccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC-CCch-hhhCCCccEEECcCCCCC
Confidence 6 69999999999854 8888775 89999999997654 4455 688899999999999886
No 100
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.60 E-value=3.6e-14 Score=152.43 Aligned_cols=271 Identities=16% Similarity=0.204 Sum_probs=164.0
Q ss_pred cCCCCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhh--ccCCCHH
Q 041067 156 RPRDNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREES--QRSGGLS 233 (770)
Q Consensus 156 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~~ 233 (770)
.+...+..|+||+++++.|.+ +.. +++.|+|++|+|||||+++++++.... .+|+. ..... ... ...
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~-~~~~~~~~~~-~~~ 75 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD-LRKFEERNYI-SYK 75 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE-GGGGTTCSCC-CHH
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE-chhhccccCC-CHH
Confidence 344566789999999999999 753 589999999999999999999887532 46665 33220 001 222
Q ss_pred HHHHHHHHHHh-------------cCC------C----------CcchHHHHHHHHCC---CcEEEEEeCCCChH-----
Q 041067 234 CLQQKLLSNLL-------------KHK------N----------VMPFIDLIFRRLSR---MKVLIVFDDVTCLS----- 276 (770)
Q Consensus 234 ~l~~~ll~~~~-------------~~~------~----------~~~~~~~l~~~L~~---kr~LlVLDdv~~~~----- 276 (770)
.+...+...+. ... . .......+.+.+.. ++++||+||++..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCch
Confidence 22222222111 000 0 01123333344421 48999999997643
Q ss_pred hHHHHHhcccCCCCCceEEEEcCchhhhhh-----------cCc-ceEEEeCccChHHHHHHHH----------------
Q 041067 277 QLQSLIGSLYWLTPVSRIIITTRNKQVLRN-----------WGV-RKIYEMKALEYHHAIELFI---------------- 328 (770)
Q Consensus 277 ~~~~l~~~~~~~~~gs~IivTTR~~~v~~~-----------~~~-~~~~~l~~L~~~ea~~Lf~---------------- 328 (770)
++..++..+....++.++|+|+|....... .+. ...+.+.+|+.+|+.+++.
T Consensus 156 ~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~i 235 (357)
T 2fna_A 156 NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVV 235 (357)
T ss_dssp CCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCHHHH
T ss_pred hHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 233333322211247789999997653221 111 3689999999999999885
Q ss_pred HhccCCCchhHHHHhhHhcC-CCHHHHHHHHHHHHhccchhHHHHHH-HhHh--cCCHHHHHHHhhcccccCCCChhHHH
Q 041067 329 MKYAQGVPLALKVLGCFLYE-REKEVWESAIDKLQRILLASIFEVLK-ISYD--SLDDKEKNIFLDVACFFQGEDVDPVM 404 (770)
Q Consensus 329 ~~~~~glPLal~~~g~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~-~sy~--~L~~~~k~~fl~~a~f~~~~~~~~l~ 404 (770)
+..++|+|+++..++..+.. .+...|.. .+.......+...+. +.++ .+++..+..+..+|+ . . ....+.
T Consensus 236 ~~~t~G~P~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~~~~l~ 309 (357)
T 2fna_A 236 YEKIGGIPGWLTYFGFIYLDNKNLDFAIN---QTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-KWSDVK 309 (357)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-CHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHccccchHHHHH---HHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-CHHHHH
Confidence 67899999999999877643 23333322 111111111212222 1111 678889999999998 2 2 555565
Q ss_pred HHHH-hcC--CCc---hhhHHHhhhccceeEecCCeEE-ecHHHHHH
Q 041067 405 KFFN-ASG--FYP---EIGMSVLVDKSLIAIDSYNKIT-MHDLLQEL 444 (770)
Q Consensus 405 ~~~~-~~g--~~~---~~~~~~L~~~sLi~~~~~~~~~-mHdl~~~~ 444 (770)
.... ..| ... ..+++.|.+.++|... .+.|. .|++++++
T Consensus 310 ~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~-~~~y~f~~~~~~~~ 355 (357)
T 2fna_A 310 RALELEEGIEISDSEIYNYLTQLTKHSWIIKE-GEKYCPSEPLISLA 355 (357)
T ss_dssp HHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES-SSCEEESSHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhCCCEEec-CCEEEecCHHHHHh
Confidence 4432 234 222 3568999999999876 45666 57788875
No 101
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.60 E-value=2.2e-14 Score=153.68 Aligned_cols=270 Identities=15% Similarity=0.185 Sum_probs=163.5
Q ss_pred cCCCCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhc--cCCCHH
Q 041067 156 RPRDNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQ--RSGGLS 233 (770)
Q Consensus 156 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~ 233 (770)
.++..+..|+||++++++|.+++..+ +++.|+|++|+|||||+++++++. + .+|+. +..... ......
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~----~-~~~~~-~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER----P-GILID-CRELYAERGHITRE 75 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS----S-EEEEE-HHHHHHTTTCBCHH
T ss_pred CCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc----C-cEEEE-eecccccccCCCHH
Confidence 44556678999999999999998643 689999999999999999999875 2 55664 332210 000233
Q ss_pred HHHHHHHHHHhc-----------------CCC----Cc-chHHHHHHHHCC-CcEEEEEeCCCChHh--------HHHHH
Q 041067 234 CLQQKLLSNLLK-----------------HKN----VM-PFIDLIFRRLSR-MKVLIVFDDVTCLSQ--------LQSLI 282 (770)
Q Consensus 234 ~l~~~ll~~~~~-----------------~~~----~~-~~~~~l~~~L~~-kr~LlVLDdv~~~~~--------~~~l~ 282 (770)
.+.+.+...+.. ... .. +....+.+..+. ++++||+||++.... +..++
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 333433332211 000 01 233344444432 389999999977432 22222
Q ss_pred hcccCCCCCceEEEEcCchhhhhh-----------cC-cceEEEeCccChHHHHHHHH------------------Hhcc
Q 041067 283 GSLYWLTPVSRIIITTRNKQVLRN-----------WG-VRKIYEMKALEYHHAIELFI------------------MKYA 332 (770)
Q Consensus 283 ~~~~~~~~gs~IivTTR~~~v~~~-----------~~-~~~~~~l~~L~~~ea~~Lf~------------------~~~~ 332 (770)
..+....++.++|+|++...+... .+ ....+.+.+|+.+|+.+++. +..+
T Consensus 156 ~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~t 235 (350)
T 2qen_A 156 AYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELL 235 (350)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 222111257889999887643221 11 13589999999999999875 6789
Q ss_pred CCCchhHHHHhhHhcC-CCHHHHHHHHHHHHhccchhHHHHHHHhHhcC---CHHHHHHHhhcccccCCCChhHHHHHHH
Q 041067 333 QGVPLALKVLGCFLYE-REKEVWESAIDKLQRILLASIFEVLKISYDSL---DDKEKNIFLDVACFFQGEDVDPVMKFFN 408 (770)
Q Consensus 333 ~glPLal~~~g~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L---~~~~k~~fl~~a~f~~~~~~~~l~~~~~ 408 (770)
+|+|+++..++..+.. .+...+. ..+.. .+...+.-.+..+ ++..+.++..+|+ .......+...+.
T Consensus 236 gG~P~~l~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~~~~ 306 (350)
T 2qen_A 236 DGIPGWLVVFGVEYLRNGDFGRAM---KRTLE----VAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRDYLA 306 (350)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHH---HHHHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccccHhHHH---HHHHH----HHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 9999999998876432 2322221 11111 1111111122222 7888999999987 2345556665543
Q ss_pred hc--CCCc---hhhHHHhhhccceeEecCCeEEe-cHHHHHHH
Q 041067 409 AS--GFYP---EIGMSVLVDKSLIAIDSYNKITM-HDLLQELG 445 (770)
Q Consensus 409 ~~--g~~~---~~~~~~L~~~sLi~~~~~~~~~m-Hdl~~~~~ 445 (770)
.. +... ..+++.|.+.++|... .+.|.+ |.+++++.
T Consensus 307 ~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 307 VKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVL 348 (350)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHH
Confidence 22 2322 3568999999999876 466665 67777764
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=1.7e-15 Score=173.27 Aligned_cols=171 Identities=21% Similarity=0.258 Sum_probs=104.0
Q ss_pred cccccccccCCCCccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcE
Q 041067 555 AEKLMLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTK 634 (770)
Q Consensus 555 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 634 (770)
+.+|+.|+++++.+..++ .+..+++|+.|+|++|.. ..++. +.++++|+.|+|++|. +..+| .+..+++|++
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l--~~~~~---l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKL--TDIKP---LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCC--CCCGG---GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCE
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCC--CCChh---hccCCCCCEEECcCCC-CCCCh-hhccCCCCCE
Confidence 345555566665555554 355566666666666532 22222 4556666666666665 34444 4556666666
Q ss_pred EEecCCCCCCccCCccc-cCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCc
Q 041067 635 LNLSGCSKLKRLPEISS-GNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQ 713 (770)
Q Consensus 635 L~L~~~~~l~~lp~~~~-~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~ 713 (770)
|+|++|. +..+|.... ++|+.|+|++|.+..+ ..+..+++|+.|+|++|...+..| +..+++|+.|+|++|...
T Consensus 114 L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~- 188 (605)
T 1m9s_A 114 LSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS- 188 (605)
T ss_dssp EECTTSC-CCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-
T ss_pred EEecCCC-CCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC-
Confidence 6666665 334444333 6666666666766666 457777777777777776544333 777777777777776543
Q ss_pred ccCcccCCCCCCcEEEccCCCCcccc
Q 041067 714 RLPECLAQFSSPIILNLAKTNIERIP 739 (770)
Q Consensus 714 ~lp~~l~~l~~L~~L~L~~~~l~~lp 739 (770)
.+| .+..+++|+.|+|++|++...|
T Consensus 189 ~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 189 DLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp BCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred CCh-HHccCCCCCEEEccCCcCcCCc
Confidence 343 4677777777777777766444
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=8.6e-15 Score=152.54 Aligned_cols=168 Identities=20% Similarity=0.218 Sum_probs=85.8
Q ss_pred CceeEEEEcCCCCCCCCCCCCcccccccccCCCCccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEec
Q 041067 534 GEVKYLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNL 613 (770)
Q Consensus 534 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L 613 (770)
.+|+.|++.++.+..+|....+.+|++|++++|.+..++. +..++ +|++|++
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~---------------------------~L~~L~l 97 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLK---------------------------NLGWLFL 97 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCT---------------------------TCCEEEC
T ss_pred CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCC---------------------------CCCEEEC
Confidence 3556666666655555443334455555555555544443 44444 4455555
Q ss_pred cCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc-cCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCC
Q 041067 614 RGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS-GNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLP 692 (770)
Q Consensus 614 ~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp 692 (770)
++|. +..+|. +..+++|++|++++|. +..++.... ++|++|++++|.+..+ ..+..+++|++|++++|... .++
T Consensus 98 ~~n~-l~~~~~-l~~l~~L~~L~L~~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~-~~~ 172 (291)
T 1h6t_A 98 DENK-VKDLSS-LKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQIS-DIV 172 (291)
T ss_dssp CSSC-CCCGGG-GTTCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCC-CCG
T ss_pred CCCc-CCCChh-hccCCCCCEEECCCCc-CCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccc-cch
Confidence 5444 233332 4455555555555543 333332222 4555555555555555 34556666666666666533 233
Q ss_pred cccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCcc
Q 041067 693 RSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIER 737 (770)
Q Consensus 693 ~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~ 737 (770)
. +..+++|+.|++++|.. ..+|. +..+++|+.|++++|+++.
T Consensus 173 ~-l~~l~~L~~L~L~~N~i-~~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 173 P-LAGLTKLQNLYLSKNHI-SDLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp G-GTTCTTCCEEECCSSCC-CBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred h-hcCCCccCEEECCCCcC-CCChh-hccCCCCCEEECcCCcccC
Confidence 2 56666666666666533 33443 5666666666666665543
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.56 E-value=1.1e-14 Score=149.44 Aligned_cols=173 Identities=21% Similarity=0.255 Sum_probs=137.6
Q ss_pred CcccccccccCCCCccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCc
Q 041067 554 SAEKLMLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLT 633 (770)
Q Consensus 554 ~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~ 633 (770)
.+.+++.+++.++.+..++ .+..+++|+.|++++|. + ..+| .+..+++|++|+|++|. +..+|. +..+++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i-~~l~---~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-I-QSLA---GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-C-CCCT---TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-c-ccch---HHhhCCCCCEEECCCCc-cCCChh-hccCCCCC
Confidence 4567888889998888887 67888999999999874 3 3444 56778899999999887 666666 88899999
Q ss_pred EEEecCCCCCCccCCccccCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCc
Q 041067 634 KLNLSGCSKLKRLPEISSGNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQ 713 (770)
Q Consensus 634 ~L~L~~~~~l~~lp~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~ 713 (770)
+|++++|. ++.+|.....+|++|++++|.+..+| .+..+++|+.|++++|.. ..+| .+..+++|+.|++++|...+
T Consensus 89 ~L~L~~N~-l~~l~~~~~~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i-~~~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 89 ELSVNRNR-LKNLNGIPSACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKL-KSIV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp EEECCSSC-CSCCTTCCCSSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCC-CBCG-GGGGCTTCCEEECTTSCCCB
T ss_pred EEECCCCc-cCCcCccccCcccEEEccCCccCCCh-hhcCcccccEEECCCCcC-CCCh-HHccCCCCCEEECCCCcCcc
Confidence 99999986 56666654478999999999988876 588899999999998874 4455 58888999999999876554
Q ss_pred ccCcccCCCCCCcEEEccCCCCcccch
Q 041067 714 RLPECLAQFSSPIILNLAKTNIERIPK 740 (770)
Q Consensus 714 ~lp~~l~~l~~L~~L~L~~~~l~~lp~ 740 (770)
. ..+..+++|+.|++++|.++..|.
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred h--HHhccCCCCCEEeCCCCcccCCcc
Confidence 4 668888999999999888775553
No 105
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=6.6e-16 Score=168.16 Aligned_cols=206 Identities=14% Similarity=0.124 Sum_probs=156.9
Q ss_pred cccccccccCCCCccc-----cccccccCcCCcEEccCcCc--CccccCCCC-----CCCCCccceeEEeccCCCCCc--
Q 041067 555 AEKLMLLEVPDSDIEQ-----LWDCVKHYRKLNQIIPAACN--KLIAKTPNP-----MLMPRLNKLVLLNLRGSKSLK-- 620 (770)
Q Consensus 555 ~~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~L~~~~--~l~~~~p~~-----~~~~~L~~L~~L~L~~~~~l~-- 620 (770)
+.+|++|++++|.+.. +...+..+++|++|+|++|. .+...+|.. ..+.++++|++|+|++|....
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 3567777788777764 44557788999999999873 221222320 012577899999999998655
Q ss_pred --ccCccCCCCCCCcEEEecCCCCCCc----cCCccc-----------cCccEEeccCcCcc--ccC---cccccCCCCC
Q 041067 621 --RLPSRIFNLEFLTKLNLSGCSKLKR----LPEISS-----------GNISWLFLRETAIE--ELP---SSIERLHRLG 678 (770)
Q Consensus 621 --~lp~~i~~l~~L~~L~L~~~~~l~~----lp~~~~-----------~~L~~L~l~~~~i~--~lp---~~i~~l~~L~ 678 (770)
.+|..+..+++|++|+|++|..... ++.... ++|++|++++|.+. .+| ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 4787888999999999999984221 222110 48999999999986 455 4677899999
Q ss_pred EEeccCCCCCC-----CCCcccCCCCCCcEEEeecCCCC----cccCcccCCCCCCcEEEccCCCCcc-----cchhhhC
Q 041067 679 YLDLLDCKRLK-----SLPRSLWMLKSLGVLNLSGCSNL----QRLPECLAQFSSPIILNLAKTNIER-----IPKSISQ 744 (770)
Q Consensus 679 ~L~L~~~~~~~-----~lp~~l~~l~~L~~L~l~~~~~~----~~lp~~l~~l~~L~~L~L~~~~l~~-----lp~~l~~ 744 (770)
+|++++|.... ..|..+..+++|++|+|++|... ..+|..+..+++|+.|+|++|.++. +|..+..
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 99999997542 34447889999999999998864 6788899999999999999999983 5777744
Q ss_pred --CCCCcEEecccCccCCc
Q 041067 745 --LLMLRYLLLSYSESLQS 761 (770)
Q Consensus 745 --l~~L~~L~l~~c~~L~~ 761 (770)
+++|+.|++++|+ ++.
T Consensus 271 ~~~~~L~~L~L~~n~-i~~ 288 (386)
T 2ca6_A 271 LENIGLQTLRLQYNE-IEL 288 (386)
T ss_dssp CSSCCCCEEECCSSC-CBH
T ss_pred ccCCCeEEEECcCCc-CCH
Confidence 9999999999997 554
No 106
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.54 E-value=1.8e-16 Score=145.02 Aligned_cols=105 Identities=14% Similarity=0.233 Sum_probs=67.1
Q ss_pred hhhhhhhhcCCCCCCCcchHHHHHHHHhccceeEeecCCccCchhhHHHHHHHHHhhccCCcEEEeEEEEecCCc----c
Q 041067 12 YKVAELIKRRGVHGGDEISKSLVNVIEASAISVIVFSEGYASSRSCLDELVKILECKKEYAQIVIPFFYRVDPSD----V 87 (770)
Q Consensus 12 ~~~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~ivv~s~~y~~s~~cl~El~~i~~~~~~~~~~v~pvf~~v~p~~----v 87 (770)
.++.+|+|++++.+|+.|.++|.+||++|+++|+|+|+||++|.||..|+..++.+.......||||||+|++++ +
T Consensus 37 ~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~L 116 (146)
T 3ub2_A 37 ASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPEL 116 (146)
T ss_dssp ----------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGG
T ss_pred CCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHH
Confidence 356789999999999999999999999999999999999999999999999999985323336789999998555 4
Q ss_pred ccccCcHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 041067 88 RNQTGSFGDSFSKLEERLKENTEKLRSWRKAL 119 (770)
Q Consensus 88 r~~~~~~~~~f~~~~~~~~~~~~~v~~w~~al 119 (770)
|....-.. ..++..+....+.|.+|++|+
T Consensus 117 r~~~~id~---~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 117 RFMYYVDG---RGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp GGSCCEET---TSGGGGHHHHHHHHHHHHTTC
T ss_pred hCeeeeec---cChHhhHHHHHHHHHHHHHhc
Confidence 54433211 122333444556788887764
No 107
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.54 E-value=4e-17 Score=182.27 Aligned_cols=257 Identities=18% Similarity=0.136 Sum_probs=127.6
Q ss_pred ccccCCCCCceEEEecCCCCCCccCCccC-CCCCCCCceeEEEEcCCCCCC-----CCCCC-CcccccccccCCCCcccc
Q 041067 499 STFTKMPKLRFLKFYSSSFNGENKCKISY-LQDPGFGEVKYLHWYGYPLKS-----LPSNL-SAEKLMLLEVPDSDIEQL 571 (770)
Q Consensus 499 ~~~~~l~~Lr~L~l~~~~l~~~~p~~l~~-l~~~~l~~Lr~L~l~~~~l~~-----lp~~~-~~~~L~~L~l~~~~i~~l 571 (770)
..+..+++|+.|++++|.+.+..+..+.. ++ ....+|++|++.+|.+.. +|..+ .+++|++|++++|.+...
T Consensus 50 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 128 (461)
T 1z7x_W 50 SALRVNPALAELNLRSNELGDVGVHCVLQGLQ-TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 128 (461)
T ss_dssp HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC-STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh-hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence 33445555566665555544321111111 11 000145566666555542 23322 235566666665555421
Q ss_pred -----ccc-cccCcCCcEEccCcCcCccccCC-C-CCCCCCccceeEEeccCCCCCcccCccCC-----CCCCCcEEEec
Q 041067 572 -----WDC-VKHYRKLNQIIPAACNKLIAKTP-N-PMLMPRLNKLVLLNLRGSKSLKRLPSRIF-----NLEFLTKLNLS 638 (770)
Q Consensus 572 -----~~~-~~~l~~L~~L~L~~~~~l~~~~p-~-~~~~~~L~~L~~L~L~~~~~l~~lp~~i~-----~l~~L~~L~L~ 638 (770)
... ....++|++|++++|..- ...+ . ...+.++++|++|++++|......+..+. .+++|++|+++
T Consensus 129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~-~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 207 (461)
T 1z7x_W 129 GLQLLCEGLLDPQCRLEKLQLEYCSLS-AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE 207 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCB-GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECT
T ss_pred HHHHHHHHHhcCCCcceEEECCCCCCC-HHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEcc
Confidence 111 112345666666555321 1000 0 01123345666666666653222111111 24466666666
Q ss_pred CCCCCCc----cCCccc--cCccEEeccCcCcccc-----Ccc-cccCCCCCEEeccCCCCCCC----CCcccCCCCCCc
Q 041067 639 GCSKLKR----LPEISS--GNISWLFLRETAIEEL-----PSS-IERLHRLGYLDLLDCKRLKS----LPRSLWMLKSLG 702 (770)
Q Consensus 639 ~~~~l~~----lp~~~~--~~L~~L~l~~~~i~~l-----p~~-i~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~ 702 (770)
+|..... ++.... ++|++|++++|.+... +.. ...+++|++|++++|..... +|..+..+++|+
T Consensus 208 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 287 (461)
T 1z7x_W 208 SCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287 (461)
T ss_dssp TSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCC
T ss_pred CCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcc
Confidence 6642221 233322 5677777776665532 122 23466777777777654322 555566677777
Q ss_pred EEEeecCCCCcccCccc-----CCCCCCcEEEccCCCCcc-----cchhhhCCCCCcEEecccCc
Q 041067 703 VLNLSGCSNLQRLPECL-----AQFSSPIILNLAKTNIER-----IPKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 703 ~L~l~~~~~~~~lp~~l-----~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~l~~c~ 757 (770)
+|++++|......+..+ ...++|+.|++++|.++. +|..+..+++|+.|++++|.
T Consensus 288 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 352 (461)
T 1z7x_W 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352 (461)
T ss_dssp EEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred eEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc
Confidence 77777765433222222 223577888888877762 56667777888888888885
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=1.9e-16 Score=180.12 Aligned_cols=193 Identities=18% Similarity=0.169 Sum_probs=110.1
Q ss_pred CcccccccccCCCCccccccccccCcCCcEEccCcCcCc------------cccCCCCCCCCCccceeEEe-ccCCCCCc
Q 041067 554 SAEKLMLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKL------------IAKTPNPMLMPRLNKLVLLN-LRGSKSLK 620 (770)
Q Consensus 554 ~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l------------~~~~p~~~~~~~L~~L~~L~-L~~~~~l~ 620 (770)
..++|+.|++++|.++.+|..++.+++|+.|+++++..+ ....| ..+.++++|+.|+ ++.+. +.
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~--~~l~~l~~L~~L~~l~~n~-~~ 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEK--ETLQYFSTLKAVDPMRAAY-LD 423 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHH--HHHHHHHHHHHHCGGGHHH-HH
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCH--HHHHHHHhcccCcchhhcc-cc
Confidence 357888999999999999999999999999998665311 01111 1234455566665 33221 11
Q ss_pred ccCc------cCCC--CCCCcEEEecCCCCCCccCCccc-cCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCC
Q 041067 621 RLPS------RIFN--LEFLTKLNLSGCSKLKRLPEISS-GNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSL 691 (770)
Q Consensus 621 ~lp~------~i~~--l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l 691 (770)
.++. .+.. ...|++|++++|. ++.+|.... ++|+.|++++|.+..+|..++.+++|+.|+|++|... .+
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~l 501 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NV 501 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCC-CCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC-CC
Confidence 1110 0000 1135666666654 444555222 5666666666666666666666666666666666533 35
Q ss_pred CcccCCCCCCcEEEeecCCCCccc-CcccCCCCCCcEEEccCCCCcccchhh----hCCCCCcEEe
Q 041067 692 PRSLWMLKSLGVLNLSGCSNLQRL-PECLAQFSSPIILNLAKTNIERIPKSI----SQLLMLRYLL 752 (770)
Q Consensus 692 p~~l~~l~~L~~L~l~~~~~~~~l-p~~l~~l~~L~~L~L~~~~l~~lp~~l----~~l~~L~~L~ 752 (770)
| .++++++|+.|++++|...+.. |..++.+++|+.|++++|+++.+|..+ ..+++|+.|+
T Consensus 502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 5 5666666666666665544433 566666666666666666666554432 2355666554
No 109
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.54 E-value=7.4e-17 Score=180.12 Aligned_cols=245 Identities=18% Similarity=0.174 Sum_probs=178.9
Q ss_pred CCceEEEecCCCCC----CccCCccCCCCCCCCceeEEEEcCCCCCCC-----CCC-C-CcccccccccCCCCccc----
Q 041067 506 KLRFLKFYSSSFNG----ENKCKISYLQDPGFGEVKYLHWYGYPLKSL-----PSN-L-SAEKLMLLEVPDSDIEQ---- 570 (770)
Q Consensus 506 ~Lr~L~l~~~~l~~----~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~l-----p~~-~-~~~~L~~L~l~~~~i~~---- 570 (770)
+|+.|++++|.+.. .+|..+..+ ++|++|++++|.+... ... . ...+|++|++++|.+..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~-----~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTL-----PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSC-----TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccC-----CceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 79999999998874 334455555 4999999999987532 111 1 13579999999998874
Q ss_pred -cccccccCcCCcEEccCcCcCccccCCCCCCCC-----CccceeEEeccCCCCCcc----cCccCCCCCCCcEEEecCC
Q 041067 571 -LWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMP-----RLNKLVLLNLRGSKSLKR----LPSRIFNLEFLTKLNLSGC 640 (770)
Q Consensus 571 -l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~-----~L~~L~~L~L~~~~~l~~----lp~~i~~l~~L~~L~L~~~ 640 (770)
++..+..+++|++|++++|..- ...+. .+. .+++|++|++++|..... +|..+..+++|++|++++|
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~-~~~~~--~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDIN-EAGVR--VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCH-HHHHH--HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHhhCCCCCEEECcCCCcc-hHHHH--HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 4566778899999999997632 11110 111 245899999999985442 5777778999999999998
Q ss_pred CCCCcc------CCcc--ccCccEEeccCcCccc-----cCcccccCCCCCEEeccCCCCCCC----CCcccC-CCCCCc
Q 041067 641 SKLKRL------PEIS--SGNISWLFLRETAIEE-----LPSSIERLHRLGYLDLLDCKRLKS----LPRSLW-MLKSLG 702 (770)
Q Consensus 641 ~~l~~l------p~~~--~~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~~----lp~~l~-~l~~L~ 702 (770)
. ++.. +... .++|++|++++|.+.. +|..+..+++|++|++++|..... ++..+. ..++|+
T Consensus 238 ~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 316 (461)
T 1z7x_W 238 K-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316 (461)
T ss_dssp B-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCC
T ss_pred c-CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccce
Confidence 6 3321 1111 2689999999999986 788888999999999999975332 222222 346999
Q ss_pred EEEeecCCCCcc----cCcccCCCCCCcEEEccCCCCccc-chhh----hC-CCCCcEEecccCccCC
Q 041067 703 VLNLSGCSNLQR----LPECLAQFSSPIILNLAKTNIERI-PKSI----SQ-LLMLRYLLLSYSESLQ 760 (770)
Q Consensus 703 ~L~l~~~~~~~~----lp~~l~~l~~L~~L~L~~~~l~~l-p~~l----~~-l~~L~~L~l~~c~~L~ 760 (770)
+|++++|...+. +|..+..+++|+.|++++|.++.. +..+ .. +++|+.|++++|+ ++
T Consensus 317 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~ 383 (461)
T 1z7x_W 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VS 383 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CC
T ss_pred eeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-CC
Confidence 999999986654 577788889999999999998832 2333 22 6799999999996 55
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=4.1e-16 Score=168.22 Aligned_cols=233 Identities=13% Similarity=0.032 Sum_probs=151.2
Q ss_pred cccccCCCCCceEEEecCCCCCCcc----CCccCCCCCCCCceeEEEEcCCCCCCCCC-CCC-c-----ccccccccCCC
Q 041067 498 PSTFTKMPKLRFLKFYSSSFNGENK----CKISYLQDPGFGEVKYLHWYGYPLKSLPS-NLS-A-----EKLMLLEVPDS 566 (770)
Q Consensus 498 ~~~~~~l~~Lr~L~l~~~~l~~~~p----~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~-~~~-~-----~~L~~L~l~~~ 566 (770)
+..+...++|+.|++++|.+.+..+ ..+..++ .+|+.|++++|.+..... .+. . .+|++|++++|
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~----~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTP----ASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN 90 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCC----TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCC----CceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC
Confidence 3445556668999998888776433 3334443 378888888888776532 221 1 67888888888
Q ss_pred Cccccccc-----cccC-cCCcEEccCcCcCccccCCCC---CCCCC-ccceeEEeccCCCCCc----ccCccCCCCC-C
Q 041067 567 DIEQLWDC-----VKHY-RKLNQIIPAACNKLIAKTPNP---MLMPR-LNKLVLLNLRGSKSLK----RLPSRIFNLE-F 631 (770)
Q Consensus 567 ~i~~l~~~-----~~~l-~~L~~L~L~~~~~l~~~~p~~---~~~~~-L~~L~~L~L~~~~~l~----~lp~~i~~l~-~ 631 (770)
.+...... +..+ ++|++|++++|.. ...+.. ..+.. .++|++|+|++|.... .++..+..++ +
T Consensus 91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 168 (362)
T 3goz_A 91 FLSYKSSDELVKTLAAIPFTITVLDLGWNDF--SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSCG--GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTT
T ss_pred cCChHHHHHHHHHHHhCCCCccEEECcCCcC--CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcc
Confidence 88754322 4444 7888888888753 222210 01222 2578888888887442 3444444555 8
Q ss_pred CcEEEecCCCCCCccCCccc-------cCccEEeccCcCccc-----cCcccccC-CCCCEEeccCCCCCCCC----Ccc
Q 041067 632 LTKLNLSGCSKLKRLPEISS-------GNISWLFLRETAIEE-----LPSSIERL-HRLGYLDLLDCKRLKSL----PRS 694 (770)
Q Consensus 632 L~~L~L~~~~~l~~lp~~~~-------~~L~~L~l~~~~i~~-----lp~~i~~l-~~L~~L~L~~~~~~~~l----p~~ 694 (770)
|++|++++|......+.... .+|++|++++|.+.. +|..+..+ ++|++|++++|.....- +..
T Consensus 169 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 248 (362)
T 3goz_A 169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLL 248 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHT
T ss_pred ccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHH
Confidence 88888888863332221111 378888888888886 67767664 58888888888754432 234
Q ss_pred cCCCCCCcEEEeecCCC-------CcccCcccCCCCCCcEEEccCCCCc
Q 041067 695 LWMLKSLGVLNLSGCSN-------LQRLPECLAQFSSPIILNLAKTNIE 736 (770)
Q Consensus 695 l~~l~~L~~L~l~~~~~-------~~~lp~~l~~l~~L~~L~L~~~~l~ 736 (770)
+..+++|++|++++|.. ...++..+..+++|+.|++++|.+.
T Consensus 249 ~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 56778888888888762 2234556777888888888888876
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=2e-13 Score=135.87 Aligned_cols=147 Identities=20% Similarity=0.207 Sum_probs=87.9
Q ss_pred cEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCccc-Cc-cCCCCCCCcEEEecCCCCCCccCC-ccc--cCccE
Q 041067 582 NQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRL-PS-RIFNLEFLTKLNLSGCSKLKRLPE-ISS--GNISW 656 (770)
Q Consensus 582 ~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~l-p~-~i~~l~~L~~L~L~~~~~l~~lp~-~~~--~~L~~ 656 (770)
+.++++++. + ..+|. .++ ..+++|+|++|. +..+ |. .+..+++|++|++++|. ++.++. .+. .+|++
T Consensus 14 ~~l~~s~n~-l-~~iP~--~~~--~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 14 TTVDCSNQK-L-NKIPE--HIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNE 85 (220)
T ss_dssp TEEECCSSC-C-SSCCS--CCC--TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred CEeEeCCCC-c-ccCcc--CCC--CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCE
Confidence 356666543 2 34443 222 245677777766 3333 32 35667777777777765 444433 222 66667
Q ss_pred EeccCcCccccCcc-cccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCC
Q 041067 657 LFLRETAIEELPSS-IERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNI 735 (770)
Q Consensus 657 L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l 735 (770)
|++++|.+..+|.. +..+++|++|++++|...+..|..+..+++|++|++++|...+..|..+..+++|+.|++++|++
T Consensus 86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 77777666666543 56666677777776665555556666666677777766655555566666666777777766665
Q ss_pred c
Q 041067 736 E 736 (770)
Q Consensus 736 ~ 736 (770)
.
T Consensus 166 ~ 166 (220)
T 2v70_A 166 N 166 (220)
T ss_dssp E
T ss_pred c
Confidence 5
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=3.1e-14 Score=145.92 Aligned_cols=171 Identities=16% Similarity=0.165 Sum_probs=139.0
Q ss_pred cCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc-cCcc
Q 041067 577 HYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS-GNIS 655 (770)
Q Consensus 577 ~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~-~~L~ 655 (770)
.+.++..++++++. +.+...+..+++|++|++++|. +..+| .+..+++|++|++++|. +..+|.... ++|+
T Consensus 17 ~l~~l~~l~l~~~~-----i~~~~~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQS-----VTDLVSQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSPLKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSC-----TTSEECHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCSSCC
T ss_pred HHHHHHHHHhcCCC-----cccccchhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChhhccCCCCC
Confidence 45667777777643 2222346778999999999997 67787 68899999999999987 666666433 8999
Q ss_pred EEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCC
Q 041067 656 WLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNI 735 (770)
Q Consensus 656 ~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l 735 (770)
+|++++|.+..+|.... ++|++|++++|.. ..+| .+..+++|+.|++++|.. ..++ .++.+++|+.|++++|.+
T Consensus 89 ~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l-~~~~-~l~~l~~L~~L~Ls~N~i-~~~~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 89 ELSVNRNRLKNLNGIPS--ACLSRLFLDNNEL-RDTD-SLIHLKNLEILSIRNNKL-KSIV-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp EEECCSSCCSCCTTCCC--SSCCEEECCSSCC-SBSG-GGTTCTTCCEEECTTSCC-CBCG-GGGGCTTCCEEECTTSCC
T ss_pred EEECCCCccCCcCcccc--CcccEEEccCCcc-CCCh-hhcCcccccEEECCCCcC-CCCh-HHccCCCCCEEECCCCcC
Confidence 99999999999886444 9999999999975 4455 589999999999999765 4555 689999999999999999
Q ss_pred cccchhhhCCCCCcEEecccCccCCcCC
Q 041067 736 ERIPKSISQLLMLRYLLLSYSESLQSSP 763 (770)
Q Consensus 736 ~~lp~~l~~l~~L~~L~l~~c~~L~~lP 763 (770)
+.+ ..+..+++|+.|++++|+ +...|
T Consensus 163 ~~~-~~l~~l~~L~~L~l~~N~-~~~~~ 188 (263)
T 1xeu_A 163 TNT-GGLTRLKKVNWIDLTGQK-CVNEP 188 (263)
T ss_dssp CBC-TTSTTCCCCCEEEEEEEE-EECCC
T ss_pred cch-HHhccCCCCCEEeCCCCc-ccCCc
Confidence 988 568999999999999997 44333
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=3.6e-13 Score=134.03 Aligned_cols=148 Identities=20% Similarity=0.207 Sum_probs=101.8
Q ss_pred cEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccC-ccCCCCCCCcEEEecCCCCCCccCCccc--cCccEEe
Q 041067 582 NQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLP-SRIFNLEFLTKLNLSGCSKLKRLPEISS--GNISWLF 658 (770)
Q Consensus 582 ~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~ 658 (770)
+.+++++.. + ..+|. .++ .+|+.|++++|. +..+| ..+..+++|++|++++|......|..+. .+|++|+
T Consensus 14 ~~v~c~~~~-l-~~iP~--~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~ 86 (220)
T 2v9t_B 14 NIVDCRGKG-L-TEIPT--NLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV 86 (220)
T ss_dssp TEEECTTSC-C-SSCCS--SCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEE
T ss_pred CEEEcCCCC-c-CcCCC--ccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEE
Confidence 456665532 3 45554 222 578888888887 44444 4677788888888888764433355444 7788888
Q ss_pred ccCcCccccCcc-cccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCc
Q 041067 659 LRETAIEELPSS-IERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIE 736 (770)
Q Consensus 659 l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~ 736 (770)
+++|.+..+|.. +..+++|++|+|++|...+..|..+..+++|+.|++++|...+..+..+..+++|+.|++++|++.
T Consensus 87 Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 87 LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 888888877765 467788888888887766655667777888888888877665555556777788888888877765
No 114
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.49 E-value=7.8e-13 Score=145.10 Aligned_cols=262 Identities=13% Similarity=0.101 Sum_probs=156.6
Q ss_pred CCCCCCcccchHHHHHHHHhh-cC--CC--CCeEEEEE--EecCCCcHHHHHHHHHHHHhCC-----CCc-eEEEEecch
Q 041067 158 RDNKNKLVGVESKVEEIESIL-GV--ES--KDVYSLGI--WGIGGIGKTTIARAIFDKISGD-----FEG-SCFLENVRE 224 (770)
Q Consensus 158 ~~~~~~~vGr~~~~~~l~~~L-~~--~~--~~~~vv~I--~G~gGiGKTtLA~~~~~~~~~~-----f~~-~~~~~~~~~ 224 (770)
...+..++||+++++++...+ .. .. ...+.+.| +|++|+||||||++++++.... ++. .+|+. +..
T Consensus 18 ~~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 96 (412)
T 1w5s_A 18 NYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN-AFN 96 (412)
T ss_dssp TCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE-GGG
T ss_pred ccCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE-CCC
Confidence 334578999999999999988 42 11 23445666 9999999999999999886542 233 34444 221
Q ss_pred hhccCCCHHHHHHHHHHHHhcCCCC-----cchHHHHHHHHC--CCcEEEEEeCCCChH--------hHHHHHhcccCC-
Q 041067 225 ESQRSGGLSCLQQKLLSNLLKHKNV-----MPFIDLIFRRLS--RMKVLIVFDDVTCLS--------QLQSLIGSLYWL- 288 (770)
Q Consensus 225 ~~~~~~~~~~l~~~ll~~~~~~~~~-----~~~~~~l~~~L~--~kr~LlVLDdv~~~~--------~~~~l~~~~~~~- 288 (770)
.. ....+...++..+...... .+....+.+.+. +++++||+||++... .+..+...+...
T Consensus 97 ---~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~ 172 (412)
T 1w5s_A 97 ---AP-NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIP 172 (412)
T ss_dssp ---CC-SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSC
T ss_pred ---CC-CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcc
Confidence 22 5667777777776433211 133555666664 679999999997643 333333333221
Q ss_pred --C--CCceEEEEcCchhhhhhc---------CcceEEEeCccChHHHHHHHH--------------------HhccC--
Q 041067 289 --T--PVSRIIITTRNKQVLRNW---------GVRKIYEMKALEYHHAIELFI--------------------MKYAQ-- 333 (770)
Q Consensus 289 --~--~gs~IivTTR~~~v~~~~---------~~~~~~~l~~L~~~ea~~Lf~--------------------~~~~~-- 333 (770)
+ ....+|+||+..++...+ .....+.+++++.++++++|. ++.++
T Consensus 173 ~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 252 (412)
T 1w5s_A 173 SRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGED 252 (412)
T ss_dssp CTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGG
T ss_pred cCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHh
Confidence 2 344588888866533111 112349999999999999984 56667
Q ss_pred ----CCchhHHHHhhHh---c---CC---CHHHHHHHHHHHHhccchhHHHHHHHhHhcCCHHHHHHHhhcccccC----
Q 041067 334 ----GVPLALKVLGCFL---Y---ER---EKEVWESAIDKLQRILLASIFEVLKISYDSLDDKEKNIFLDVACFFQ---- 396 (770)
Q Consensus 334 ----glPLal~~~g~~L---~---~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~---- 396 (770)
|.|..+..+.... . +. +.+.+..++.... . ...+.-+++.||+..+.++..+|.+..
T Consensus 253 ~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~---~---~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 253 KGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE---A---ASIQTHELEALSIHELIILRLIAEATLGGME 326 (412)
T ss_dssp GTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCS
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh---c---cchHHHHHHcCCHHHHHHHHHHHHHHhcCCC
Confidence 8886554443221 1 11 2233333322211 0 233444667899999999999987642
Q ss_pred CCChhHHHH----HH-HhcCCCc------hhhHHHhhhccceeEe
Q 041067 397 GEDVDPVMK----FF-NASGFYP------EIGMSVLVDKSLIAID 430 (770)
Q Consensus 397 ~~~~~~l~~----~~-~~~g~~~------~~~~~~L~~~sLi~~~ 430 (770)
.+....+.. +. ...|..+ ..+++.|.+.++|...
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp SBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 233443332 22 2334321 3458999999999875
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=3.8e-13 Score=134.75 Aligned_cols=148 Identities=22% Similarity=0.146 Sum_probs=107.0
Q ss_pred CcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCcc-c--cCccEE
Q 041067 581 LNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEIS-S--GNISWL 657 (770)
Q Consensus 581 L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~-~--~~L~~L 657 (770)
.+.++.++.. + ..+|. .+ .++|++|+|++|......|..+..+++|++|+|++|. ++.+|... . ++|++|
T Consensus 21 ~~~v~c~~~~-l-~~ip~--~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 21 GTTVDCRSKR-H-ASVPA--GI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVL 93 (229)
T ss_dssp TTEEECTTSC-C-SSCCS--CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCEeEccCCC-c-CccCC--CC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEE
Confidence 3456665532 3 45554 22 2778888888888655557778888888888888877 56666433 2 778888
Q ss_pred eccCcCccccCcc-cccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCc
Q 041067 658 FLRETAIEELPSS-IERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIE 736 (770)
Q Consensus 658 ~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~ 736 (770)
++++|.+..+|.. +..+++|++|++++|.. ..+|..+..+++|++|++++|...+..+..+..+++|+.|++++|++.
T Consensus 94 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 94 DLGTNQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ECCCCcCCccChhHhCcchhhCeEeccCCcc-cccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 8888888877765 57788888888888774 477877888888888888887655444456778888888888888876
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.48 E-value=8.1e-14 Score=136.24 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=56.9
Q ss_pred cCccEEeccCcCcc-ccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEc
Q 041067 652 GNISWLFLRETAIE-ELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNL 730 (770)
Q Consensus 652 ~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L 730 (770)
++|++|++++|.+. ..|..+..+++|++|++++|...+.+| .+..+++|+.|++++|.. ..++ .+..+++|+.|++
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYR-GIEDFPKLNQLYA 188 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCT-TGGGCSSCCEEEE
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChH-HhccCCCCCEEEe
Confidence 34444444445555 356667788888888888887566666 578888888888888764 3455 6788888888888
Q ss_pred cCCCCc
Q 041067 731 AKTNIE 736 (770)
Q Consensus 731 ~~~~l~ 736 (770)
++|++.
T Consensus 189 ~~N~i~ 194 (197)
T 4ezg_A 189 FSQTIG 194 (197)
T ss_dssp CBC---
T ss_pred eCcccC
Confidence 888764
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.47 E-value=2e-15 Score=162.69 Aligned_cols=242 Identities=14% Similarity=0.034 Sum_probs=171.6
Q ss_pred EEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCC-----CC-Ccc-cccccccCCCCcccc-ccccccC---
Q 041067 510 LKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPS-----NL-SAE-KLMLLEVPDSDIEQL-WDCVKHY--- 578 (770)
Q Consensus 510 L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~-----~~-~~~-~L~~L~l~~~~i~~l-~~~~~~l--- 578 (770)
+.++.+.+++.+|..+. .+ .+|++|++++|.+...+. .+ .+. +|++|++++|.+... +..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~-~~----~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 77 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTS-IP----HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77 (362)
T ss_dssp EECCCCTTCCHHHHHHT-SC----TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred cccccccchHHHHHHHh-CC----CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence 56677888876554433 33 479999999999988774 22 244 899999999999865 3444443
Q ss_pred --cCCcEEccCcCcCccccCCC-C-CCCCCc-cceeEEeccCCCCCcccCcc----CCC-CCCCcEEEecCCCCCC----
Q 041067 579 --RKLNQIIPAACNKLIAKTPN-P-MLMPRL-NKLVLLNLRGSKSLKRLPSR----IFN-LEFLTKLNLSGCSKLK---- 644 (770)
Q Consensus 579 --~~L~~L~L~~~~~l~~~~p~-~-~~~~~L-~~L~~L~L~~~~~l~~lp~~----i~~-l~~L~~L~L~~~~~l~---- 644 (770)
++|++|++++|..- ...+. + ..+..+ ++|++|+|++|......+.. +.. .++|++|++++|....
T Consensus 78 ~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 78 IPANVTSLNLSGNFLS-YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD 156 (362)
T ss_dssp SCTTCCEEECCSSCGG-GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred cCCCccEEECcCCcCC-hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence 99999999998632 22111 0 012333 78999999999843333322 333 3699999999987432
Q ss_pred ccCCccc---cCccEEeccCcCccccCc-----ccccC-CCCCEEeccCCCCCC----CCCcccCC-CCCCcEEEeecCC
Q 041067 645 RLPEISS---GNISWLFLRETAIEELPS-----SIERL-HRLGYLDLLDCKRLK----SLPRSLWM-LKSLGVLNLSGCS 710 (770)
Q Consensus 645 ~lp~~~~---~~L~~L~l~~~~i~~lp~-----~i~~l-~~L~~L~L~~~~~~~----~lp~~l~~-l~~L~~L~l~~~~ 710 (770)
.++.... .+|++|++++|.+...+. .+..+ ++|++|++++|.... .++..+.. .++|++|++++|.
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 3332222 389999999999985543 34555 599999999998543 25666655 4599999999987
Q ss_pred CCccc----CcccCCCCCCcEEEccCCCCc--------ccchhhhCCCCCcEEecccCc
Q 041067 711 NLQRL----PECLAQFSSPIILNLAKTNIE--------RIPKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 711 ~~~~l----p~~l~~l~~L~~L~L~~~~l~--------~lp~~l~~l~~L~~L~l~~c~ 757 (770)
....- ...+..+++|+.|++++|.+. .++..+..+++|+.|++++|+
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 65432 345688899999999999833 455667888999999999998
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=6.5e-13 Score=130.96 Aligned_cols=175 Identities=21% Similarity=0.158 Sum_probs=113.9
Q ss_pred cccccCCCCccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCc-cCCCCCCCcEEEe
Q 041067 559 MLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPS-RIFNLEFLTKLNL 637 (770)
Q Consensus 559 ~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L 637 (770)
+.++..++.+..+|..+ .++|++|+++++.. ..++. ..+.++++|++|++++|. +..+|. .+..+++|++|++
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l--~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSL--KSLPN-GVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCC--CCCCT-TTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCcc--CcCCh-hhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEEC
Confidence 45666777777777554 45788888887642 33332 235677788888888776 444544 3567788888888
Q ss_pred cCCCCCCccCCc-cc--cCccEEeccCcCccccCcc-cccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCc
Q 041067 638 SGCSKLKRLPEI-SS--GNISWLFLRETAIEELPSS-IERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQ 713 (770)
Q Consensus 638 ~~~~~l~~lp~~-~~--~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~ 713 (770)
++|. +..+|.. +. ++|++|++++|.+..+|.. +..+++|++|++++|...+..+..+..+++|+.|++++|...
T Consensus 84 s~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~- 161 (208)
T 2o6s_A 84 STNQ-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD- 161 (208)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-
T ss_pred CCCc-CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-
Confidence 8776 4445443 22 6777777777777776654 567777777777777654333334667777777777776432
Q ss_pred ccCcccCCCCCCcEEEccCCCCc-ccchhhhCCCC
Q 041067 714 RLPECLAQFSSPIILNLAKTNIE-RIPKSISQLLM 747 (770)
Q Consensus 714 ~lp~~l~~l~~L~~L~L~~~~l~-~lp~~l~~l~~ 747 (770)
+.+++|+.|+++.|.++ .+|.+++.++.
T Consensus 162 ------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 ------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 34556777777777776 67776666654
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=1.4e-12 Score=128.45 Aligned_cols=152 Identities=20% Similarity=0.193 Sum_probs=122.2
Q ss_pred ccceeEEeccCCCCCcccCc-cCCCCCCCcEEEecCCCCCCccCCcc-c--cCccEEeccCcCccccCcc-cccCCCCCE
Q 041067 605 LNKLVLLNLRGSKSLKRLPS-RIFNLEFLTKLNLSGCSKLKRLPEIS-S--GNISWLFLRETAIEELPSS-IERLHRLGY 679 (770)
Q Consensus 605 L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~~-~--~~L~~L~l~~~~i~~lp~~-i~~l~~L~~ 679 (770)
.++|++|++++|.. ..+|. .+..+++|++|++++|. ++.+|... . .+|++|++++|.+..+|.. +..+++|++
T Consensus 27 ~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 27 PAQTTYLDLETNSL-KSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp CTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCCcc-CcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence 45899999999984 45554 46789999999999986 55666533 3 8999999999999988875 688999999
Q ss_pred EeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCcccchhhhCCCCCcEEecccCccC
Q 041067 680 LDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIERIPKSISQLLMLRYLLLSYSESL 759 (770)
Q Consensus 680 L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~L 759 (770)
|++++|...+..+..+..+++|++|++++|...+..+..+..+++|+.|++++|++. +.+++|+.|+++.|..-
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHS 178 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCT
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCC
Confidence 999998865444445789999999999998766555556889999999999999765 45678889999998866
Q ss_pred CcCCC
Q 041067 760 QSSPK 764 (770)
Q Consensus 760 ~~lP~ 764 (770)
..+|.
T Consensus 179 g~ip~ 183 (208)
T 2o6s_A 179 GVVRN 183 (208)
T ss_dssp TTBBC
T ss_pred ceeec
Confidence 67774
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=7.6e-13 Score=131.64 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=94.6
Q ss_pred EEEEcCCCCCCCCCCCCcccccccccCCCCccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCC
Q 041067 538 YLHWYGYPLKSLPSNLSAEKLMLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSK 617 (770)
Q Consensus 538 ~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~ 617 (770)
.++++++.++.+|..+ +..+++|++++|.+..++ ....+.++++|++|+|++|.
T Consensus 15 ~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~-------------------------~~~~~~~l~~L~~L~L~~N~ 68 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLE-------------------------ATGIFKKLPQLRKINFSNNK 68 (220)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEEC-------------------------CCCCGGGCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccC-------------------------chhhhccCCCCCEEECCCCc
Confidence 5556666666665543 233455555555554442 21224455555666666555
Q ss_pred CCcccCccCCCCCCCcEEEecCCCCCCccCC-ccc--cCccEEeccCcCcccc-CcccccCCCCCEEeccCCCCCCCCCc
Q 041067 618 SLKRLPSRIFNLEFLTKLNLSGCSKLKRLPE-ISS--GNISWLFLRETAIEEL-PSSIERLHRLGYLDLLDCKRLKSLPR 693 (770)
Q Consensus 618 ~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~~~--~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~ 693 (770)
.....|..+..+++|++|++++|.. ..+|. .+. ++|++|++++|.+..+ |..+..+++|++|+|++|...+..|.
T Consensus 69 i~~i~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 69 ITDIEEGAFEGASGVNEILLTSNRL-ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCC-CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred CCEECHHHhCCCCCCCEEECCCCcc-CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence 3222233555666666666666653 33332 222 5666667777777766 56788999999999999997777788
Q ss_pred ccCCCCCCcEEEeecCCCCc
Q 041067 694 SLWMLKSLGVLNLSGCSNLQ 713 (770)
Q Consensus 694 ~l~~l~~L~~L~l~~~~~~~ 713 (770)
.+..+++|+.|++++|....
T Consensus 148 ~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTTTCTTCCEEECCSCCEEC
T ss_pred HhcCCCCCCEEEecCcCCcC
Confidence 99999999999999987654
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=1.4e-15 Score=172.96 Aligned_cols=180 Identities=17% Similarity=0.113 Sum_probs=146.3
Q ss_pred cccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCC-------------CCcccCccCCCCCCCcEEE-ecCC
Q 041067 575 VKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSK-------------SLKRLPSRIFNLEFLTKLN-LSGC 640 (770)
Q Consensus 575 ~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~-------------~l~~lp~~i~~l~~L~~L~-L~~~ 640 (770)
+...++|+.|+|+++. + ..+|. .++++++|+.|++++|. .....|..++.+++|+.|+ ++.+
T Consensus 345 ~~~~~~L~~L~Ls~n~-L-~~Lp~--~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n 420 (567)
T 1dce_A 345 SATDEQLFRCELSVEK-S-TVLQS--ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420 (567)
T ss_dssp CSTTTTSSSCCCCHHH-H-HHHHH--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred cccCccceeccCChhh-H-HhhHH--HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc
Confidence 3567889999999854 3 55664 67888999999987664 3455667777888888888 4443
Q ss_pred CCCCccCCc----------cccCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCC
Q 041067 641 SKLKRLPEI----------SSGNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCS 710 (770)
Q Consensus 641 ~~l~~lp~~----------~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 710 (770)
. +..++.. ....|+.|++++|.+..+|. ++.+++|+.|++++|... .+|..++++++|+.|++++|.
T Consensus 421 ~-~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 497 (567)
T 1dce_A 421 Y-LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA 497 (567)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred c-cchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC
Confidence 2 2222221 11469999999999999997 999999999999999854 899999999999999999977
Q ss_pred CCcccCcccCCCCCCcEEEccCCCCccc--chhhhCCCCCcEEecccCccCCcCCC
Q 041067 711 NLQRLPECLAQFSSPIILNLAKTNIERI--PKSISQLLMLRYLLLSYSESLQSSPK 764 (770)
Q Consensus 711 ~~~~lp~~l~~l~~L~~L~L~~~~l~~l--p~~l~~l~~L~~L~l~~c~~L~~lP~ 764 (770)
.. .+| .++.+++|+.|+|++|.++.+ |..++.+++|+.|++++|+ ++.+|+
T Consensus 498 l~-~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~ 550 (567)
T 1dce_A 498 LE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEG 550 (567)
T ss_dssp CC-CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSS
T ss_pred CC-CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCcc
Confidence 55 488 899999999999999999987 8999999999999999998 777765
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.43 E-value=4.5e-13 Score=127.26 Aligned_cols=134 Identities=23% Similarity=0.215 Sum_probs=101.2
Q ss_pred cceeEEeccCCCCC-cccCccCCCCCCCcEEEecCCCCCCccCCccccCccEEeccCcCccccCcccccCCCCCEEeccC
Q 041067 606 NKLVLLNLRGSKSL-KRLPSRIFNLEFLTKLNLSGCSKLKRLPEISSGNISWLFLRETAIEELPSSIERLHRLGYLDLLD 684 (770)
Q Consensus 606 ~~L~~L~L~~~~~l-~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~ 684 (770)
++|++|++++|... ..+|..+..+++|++|++++|. +..+ ..+..+++|++|++++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~----------------------l~~~-~~~~~l~~L~~L~Ls~ 80 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG----------------------LISV-SNLPKLPKLKKLELSE 80 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC----------------------CCCC-SSCCCCSSCCEEEEES
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC----------------------CCCh-hhhccCCCCCEEECcC
Confidence 56788888877743 3677767777777777777764 3333 4567778888888888
Q ss_pred CCCCCCCCcccCCCCCCcEEEeecCCCCcccC--cccCCCCCCcEEEccCCCCcccch----hhhCCCCCcEEecccCcc
Q 041067 685 CKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLP--ECLAQFSSPIILNLAKTNIERIPK----SISQLLMLRYLLLSYSES 758 (770)
Q Consensus 685 ~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~L~~~~l~~lp~----~l~~l~~L~~L~l~~c~~ 758 (770)
|...+.+|..+.++++|++|++++|.. ..+| ..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|+
T Consensus 81 N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~- 158 (168)
T 2ell_A 81 NRIFGGLDMLAEKLPNLTHLNLSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE- 158 (168)
T ss_dssp CCCCSCCCHHHHHCTTCCEEECBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-
T ss_pred CcCchHHHHHHhhCCCCCEEeccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-
Confidence 876665777677788888888888754 4444 678888899999999998888776 67889999999999986
Q ss_pred CCcCCC
Q 041067 759 LQSSPK 764 (770)
Q Consensus 759 L~~lP~ 764 (770)
+.++|+
T Consensus 159 ~~~~~~ 164 (168)
T 2ell_A 159 DQEAPD 164 (168)
T ss_dssp SCBCCS
T ss_pred hhhccc
Confidence 666664
No 123
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.42 E-value=5.4e-15 Score=170.56 Aligned_cols=251 Identities=12% Similarity=-0.004 Sum_probs=134.4
Q ss_pred ccCCCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCC----CCCCC-CCcccccccccCCCCcccccccc
Q 041067 501 FTKMPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLK----SLPSN-LSAEKLMLLEVPDSDIEQLWDCV 575 (770)
Q Consensus 501 ~~~l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~----~lp~~-~~~~~L~~L~l~~~~i~~l~~~~ 575 (770)
+.++++|+.|++.+|.+.+ +|..+..++ +|+.|.+.++... ..+.. ..+.+|+.|++.+.....++..+
T Consensus 216 ~~~~~~L~~L~L~~~~~~~-l~~~~~~~~-----~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~ 289 (592)
T 3ogk_B 216 ARNCRSLVSVKVGDFEILE-LVGFFKAAA-----NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF 289 (592)
T ss_dssp HHHCTTCCEEECSSCBGGG-GHHHHHHCT-----TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGG
T ss_pred HhhCCCCcEEeccCccHHH-HHHHHhhhh-----HHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHH
Confidence 4567777777777765543 333333332 5555555432211 11111 12345555555555445555555
Q ss_pred ccCcCCcEEccCcCcCccccCCCCCCCCCc------------------------cceeEEeccC----------CCCCcc
Q 041067 576 KHYRKLNQIIPAACNKLIAKTPNPMLMPRL------------------------NKLVLLNLRG----------SKSLKR 621 (770)
Q Consensus 576 ~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L------------------------~~L~~L~L~~----------~~~l~~ 621 (770)
..+++|++|++++|. +..... ...+.++ ++|++|++++ |..+..
T Consensus 290 ~~~~~L~~L~Ls~~~-l~~~~~-~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~ 367 (592)
T 3ogk_B 290 PFAAQIRKLDLLYAL-LETEDH-CTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367 (592)
T ss_dssp GGGGGCCEEEETTCC-CCHHHH-HHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred hhcCCCcEEecCCCc-CCHHHH-HHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH
Confidence 556666666666654 101000 0011233 4455555552 332221
Q ss_pred --cCccCCCCCCCcEEEecCCCCCCccCCccc---cCccEEecc----CcCccccC------cccccCCCCCEEeccCCC
Q 041067 622 --LPSRIFNLEFLTKLNLSGCSKLKRLPEISS---GNISWLFLR----ETAIEELP------SSIERLHRLGYLDLLDCK 686 (770)
Q Consensus 622 --lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~---~~L~~L~l~----~~~i~~lp------~~i~~l~~L~~L~L~~~~ 686 (770)
++.....+++|++|+++.+......+.... ++|++|+++ ++.++..| ..+..+++|++|++++|.
T Consensus 368 ~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 368 RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred HHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence 121122355566666633332211111111 456667664 44555432 225557777777776654
Q ss_pred C--CCCCCccc-CCCCCCcEEEeecCCCCc-ccCcccCCCCCCcEEEccCCCCc--ccchhhhCCCCCcEEecccCccCC
Q 041067 687 R--LKSLPRSL-WMLKSLGVLNLSGCSNLQ-RLPECLAQFSSPIILNLAKTNIE--RIPKSISQLLMLRYLLLSYSESLQ 760 (770)
Q Consensus 687 ~--~~~lp~~l-~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~L~~~~l~--~lp~~l~~l~~L~~L~l~~c~~L~ 760 (770)
. ....+..+ ..+++|+.|++++|...+ .++..+..+++|+.|++++|.++ .++..+..+++|+.|++++|+ ++
T Consensus 448 ~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~-it 526 (592)
T 3ogk_B 448 GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR-AS 526 (592)
T ss_dssp GGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB-CC
T ss_pred CCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc-CC
Confidence 2 22222222 237788888888876554 35556688899999999999987 466666789999999999998 54
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.41 E-value=1.8e-12 Score=139.46 Aligned_cols=167 Identities=22% Similarity=0.257 Sum_probs=128.3
Q ss_pred cEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCc-cCC-CCCCCcEEEecCCCCCCccCC-ccc--cCccE
Q 041067 582 NQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPS-RIF-NLEFLTKLNLSGCSKLKRLPE-ISS--GNISW 656 (770)
Q Consensus 582 ~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~-~i~-~l~~L~~L~L~~~~~l~~lp~-~~~--~~L~~ 656 (770)
+.++++++. + ..+|. .++ ..++.|+|++|. +..+|. .+. .+++|++|+|++|. +..++. .+. .+|++
T Consensus 21 ~~l~c~~~~-l-~~iP~--~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~ 92 (361)
T 2xot_A 21 NILSCSKQQ-L-PNVPQ--SLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRY 92 (361)
T ss_dssp TEEECCSSC-C-SSCCS--SCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred CEEEeCCCC-c-CccCc--cCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCE
Confidence 567777643 4 55664 222 458999999998 555554 455 89999999999987 555553 333 88999
Q ss_pred EeccCcCccccCc-ccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCccc----CCCCCCcEEEcc
Q 041067 657 LFLRETAIEELPS-SIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECL----AQFSSPIILNLA 731 (770)
Q Consensus 657 L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l----~~l~~L~~L~L~ 731 (770)
|+|++|.+..+|. .+..+++|++|+|++|......|..+..+++|+.|+|++|.. ..+|..+ ..+++|+.|+|+
T Consensus 93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCCEEECC
T ss_pred EECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCCEEECC
Confidence 9999999998876 478899999999999987666677899999999999999764 4566543 679999999999
Q ss_pred CCCCcccch-hhhCCCC--CcEEecccCc
Q 041067 732 KTNIERIPK-SISQLLM--LRYLLLSYSE 757 (770)
Q Consensus 732 ~~~l~~lp~-~l~~l~~--L~~L~l~~c~ 757 (770)
+|.++.+|. .+..++. |+.|++++|+
T Consensus 172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 999998884 5677776 4889999987
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.40 E-value=3.3e-12 Score=126.99 Aligned_cols=147 Identities=18% Similarity=0.229 Sum_probs=93.7
Q ss_pred cccccCCCCccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEec
Q 041067 559 MLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLS 638 (770)
Q Consensus 559 ~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~ 638 (770)
+.++++++.+..+|..+. ++|+.|+++++.. ..++. ..+.++++|++|+|++|......|..+..+++|++|+|+
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i--~~i~~-~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTI--KVIPP-GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCC--CEECT-TSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcC--CCcCH-hHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 456666777777766543 5677777776542 23332 245666777777777776444446667777777777777
Q ss_pred CCCCCCccCCcc-c--cCccEEeccCcCccccC-cccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCC
Q 041067 639 GCSKLKRLPEIS-S--GNISWLFLRETAIEELP-SSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSN 711 (770)
Q Consensus 639 ~~~~l~~lp~~~-~--~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 711 (770)
+|. ++.+|... . .+|++|++++|.+..++ ..+..+++|++|+|++|...+..+..+..+++|+.|++++|..
T Consensus 89 ~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 89 GNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 765 44555532 2 67777777777777653 4566777777777777765444444566777777777777653
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.40 E-value=1.8e-12 Score=139.48 Aligned_cols=172 Identities=20% Similarity=0.155 Sum_probs=134.3
Q ss_pred ccccccCCCCccccccccccCcCCcEEccCcCcCccccCCCCCCCC-CccceeEEeccCCCCCcccCccCCCCCCCcEEE
Q 041067 558 LMLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMP-RLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLN 636 (770)
Q Consensus 558 L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~-~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 636 (770)
-+.++++++++..+|..+. +.++.|+|+++. + ..++. ..+. ++++|++|+|++|......|..+..+++|++|+
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~-l-~~l~~-~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNN-L-SRLRA-EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSC-C-CEECT-TSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCC-C-CccCh-hhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 4678999999999998654 468999999975 3 34443 2344 889999999999984444445688999999999
Q ss_pred ecCCCCCCccCCc-cc--cCccEEeccCcCcccc-CcccccCCCCCEEeccCCCCCCCCCccc----CCCCCCcEEEeec
Q 041067 637 LSGCSKLKRLPEI-SS--GNISWLFLRETAIEEL-PSSIERLHRLGYLDLLDCKRLKSLPRSL----WMLKSLGVLNLSG 708 (770)
Q Consensus 637 L~~~~~l~~lp~~-~~--~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~l----~~l~~L~~L~l~~ 708 (770)
|++|. ++.+|.. +. .+|++|+|++|.+..+ |..+..+++|++|+|++|.. ..+|..+ ..+++|+.|+|++
T Consensus 95 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 95 LSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp CCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCCEEECCS
T ss_pred CCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCCEEECCC
Confidence 99987 5666553 33 8999999999999987 56789999999999999874 5577654 5799999999999
Q ss_pred CCCCcccCcccCCCCC--CcEEEccCCCCc
Q 041067 709 CSNLQRLPECLAQFSS--PIILNLAKTNIE 736 (770)
Q Consensus 709 ~~~~~~lp~~l~~l~~--L~~L~L~~~~l~ 736 (770)
|......+..+..+++ |+.|+|++|++.
T Consensus 173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 7655433356777776 488999999987
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.39 E-value=3.2e-12 Score=124.24 Aligned_cols=123 Identities=24% Similarity=0.229 Sum_probs=56.4
Q ss_pred eEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc--cCccEEeccCcCccccCc-ccccCCCCCEEeccCC
Q 041067 609 VLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS--GNISWLFLRETAIEELPS-SIERLHRLGYLDLLDC 685 (770)
Q Consensus 609 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~ 685 (770)
++++++++. +..+|..+. ++|++|++++|. ++.+|..+. .+|++|++++|.+..++. .+..+++|++|+|++|
T Consensus 13 ~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSC-CSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCC-CCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 355665554 455555442 455566655544 334443322 444555555555444432 2444445555555544
Q ss_pred CCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCC
Q 041067 686 KRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNI 735 (770)
Q Consensus 686 ~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l 735 (770)
......|..+..+++|+.|++++|......+..+..+++|+.|++++|++
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 43333333344445555555544433222222344444555555554443
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.38 E-value=5.5e-12 Score=126.30 Aligned_cols=147 Identities=23% Similarity=0.175 Sum_probs=93.6
Q ss_pred cccCCCCccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCc-cCCCCCCCcEEEecC
Q 041067 561 LEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPS-RIFNLEFLTKLNLSG 639 (770)
Q Consensus 561 L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~ 639 (770)
++.+++.+..+|..+. ++|+.|+++++..- .++ ...+.++++|++|+|++|. +..+|. .+..+++|++|+|++
T Consensus 24 v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~--~~~-~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIP--TNAQILYLHDNQIT--KLE-PGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSSCCC--CCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred eEccCCCcCccCCCCC--CCCCEEEcCCCccC--ccC-HHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCC
Confidence 3444444444443332 45555555554321 111 1245566667777777666 345543 346677777777777
Q ss_pred CCCCCccCCcc-c--cCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcc
Q 041067 640 CSKLKRLPEIS-S--GNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQR 714 (770)
Q Consensus 640 ~~~l~~lp~~~-~--~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~ 714 (770)
|. ++.+|... . .+|++|++++|.+..+|..+..+++|++|++++|......+..+..+++|+.|++++|.....
T Consensus 98 N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 98 NQ-LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred Cc-CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 65 44454432 2 677777777788888888889999999999999875544345688899999999998875543
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.37 E-value=3.5e-12 Score=123.96 Aligned_cols=124 Identities=23% Similarity=0.243 Sum_probs=96.3
Q ss_pred eEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCc--cc--cCccEEeccCcCcccc-CcccccCCCCCEEecc
Q 041067 609 VLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEI--SS--GNISWLFLRETAIEEL-PSSIERLHRLGYLDLL 683 (770)
Q Consensus 609 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~--~~--~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~ 683 (770)
++++++++. ++.+|..+.. +|++|++++|. ++.+|.. +. ++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 11 ~~l~~s~~~-l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSC-CSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCC-cCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 678888876 6788876643 88899998886 4555542 33 7888888888888876 5678888888888888
Q ss_pred CCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCc
Q 041067 684 DCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIE 736 (770)
Q Consensus 684 ~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~ 736 (770)
+|...+..|..+..+++|++|++++|...+..|..+..+++|+.|++++|+++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 88766555666788888888888888777777888888888888888888876
No 130
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.37 E-value=4.6e-14 Score=162.68 Aligned_cols=176 Identities=19% Similarity=0.118 Sum_probs=106.5
Q ss_pred ccCCCCCceEEEecCCCCCC----ccCCccCCCCCCCCceeEEEEcCCCCCCCC-----CCC-CcccccccccCCCCccc
Q 041067 501 FTKMPKLRFLKFYSSSFNGE----NKCKISYLQDPGFGEVKYLHWYGYPLKSLP-----SNL-SAEKLMLLEVPDSDIEQ 570 (770)
Q Consensus 501 ~~~l~~Lr~L~l~~~~l~~~----~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp-----~~~-~~~~L~~L~l~~~~i~~ 570 (770)
..++++|+.|++++|.+.+. ++..+.. +++|+.|++.++.+..+. ..+ .+++|+.|++.++.+..
T Consensus 160 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~-----~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQH-----NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp HHHCTTCSEEECTTCEEECCCSHHHHHHHHH-----CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred HhhCCCCCEEECccccccCcchhHHHHHHhc-----CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence 34788999999998876553 1111222 358899999888876332 111 24789999999999888
Q ss_pred cccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCc-cCCc
Q 041067 571 LWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKR-LPEI 649 (770)
Q Consensus 571 l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~ 649 (770)
++..+..+++|+.|+++.+.......+....+..+++|+.|+++++. ...+|..+..+++|++|++++|..... ++..
T Consensus 235 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~ 313 (592)
T 3ogk_B 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTL 313 (592)
T ss_dssp GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHH
T ss_pred HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHH
Confidence 88888889999999988643221112233455666777777777653 455666666677777777777762111 1111
Q ss_pred cc--cCccEEeccCcCcc--ccCcccccCCCCCEEecc
Q 041067 650 SS--GNISWLFLRETAIE--ELPSSIERLHRLGYLDLL 683 (770)
Q Consensus 650 ~~--~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~L~ 683 (770)
.. ++|++|++. +.+. .++.....+++|++|+++
T Consensus 314 ~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 314 IQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp HTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence 11 456666555 2222 222223444555555555
No 131
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.36 E-value=1.2e-10 Score=126.22 Aligned_cols=257 Identities=16% Similarity=0.114 Sum_probs=152.0
Q ss_pred CCcccchHHHHHHHHhhcC--CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC------C-C-ceEEEEecchhhccCCC
Q 041067 162 NKLVGVESKVEEIESILGV--ESKDVYSLGIWGIGGIGKTTIARAIFDKISGD------F-E-GSCFLENVREESQRSGG 231 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f-~-~~~~~~~~~~~~~~~~~ 231 (770)
+.++||+++++++..++.. .....+.+.|+|++|+||||+|+.+++..... + . ..+|+. ..... . .
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~-~~~~~--~-~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-CREVG--G-T 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE-HHHHC--S-C
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE-CccCC--C-C
Confidence 6799999999999988753 23446689999999999999999999986433 2 2 334443 22221 1 3
Q ss_pred HHHHHHHHHHHHhcCCC------CcchHHHHHHHHCCCcEEEEEeCCCChHh---HHH-HHhcccCCCCCceEEEEcCch
Q 041067 232 LSCLQQKLLSNLLKHKN------VMPFIDLIFRRLSRMKVLIVFDDVTCLSQ---LQS-LIGSLYWLTPVSRIIITTRNK 301 (770)
Q Consensus 232 ~~~l~~~ll~~~~~~~~------~~~~~~~l~~~L~~kr~LlVLDdv~~~~~---~~~-l~~~~~~~~~gs~IivTTR~~ 301 (770)
...+...++..+.+... .......+.+.+..++.+|||||++.... .+. +...+.+. .+..||+||+..
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~ 174 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSST
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCC
Confidence 34555666666633211 12446677778877777999999977543 222 22222223 778899999876
Q ss_pred hhhhhc------CcceEEEeCccChHHHHHHHH--------------------HhccC---CCch-hHHHHhhHh--c-C
Q 041067 302 QVLRNW------GVRKIYEMKALEYHHAIELFI--------------------MKYAQ---GVPL-ALKVLGCFL--Y-E 348 (770)
Q Consensus 302 ~v~~~~------~~~~~~~l~~L~~~ea~~Lf~--------------------~~~~~---glPL-al~~~g~~L--~-~ 348 (770)
.....+ .....+.+++++.++..+++. ++.++ |.|. |+..+.... . +
T Consensus 175 ~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 175 NVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred chHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 321111 112389999999999999986 22222 3332 221111111 0 1
Q ss_pred ---CCHHHHHHHHHHHHhccchhHHHHHHHhHhcCCHHHHHHHhhcccccCCCCh-hHHHHHHHhcCCCc------hhhH
Q 041067 349 ---REKEVWESAIDKLQRILLASIFEVLKISYDSLDDKEKNIFLDVACFFQGEDV-DPVMKFFNASGFYP------EIGM 418 (770)
Q Consensus 349 ---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~-~~l~~~~~~~g~~~------~~~~ 418 (770)
-+.+.+..+++... ...+.-+++.|+++++..+..++....+-+. +....+....|..+ ...+
T Consensus 255 ~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l 327 (384)
T 2qby_B 255 GGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDII 327 (384)
T ss_dssp SSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 13344444433321 2345567789999998888877761110111 12333333334222 2447
Q ss_pred HHhhhccceeEe
Q 041067 419 SVLVDKSLIAID 430 (770)
Q Consensus 419 ~~L~~~sLi~~~ 430 (770)
+.|.+++++...
T Consensus 328 ~~L~~~gli~~~ 339 (384)
T 2qby_B 328 SELDMFGIVKIR 339 (384)
T ss_dssp HHHHHTTSEEEE
T ss_pred HHHHhCCCEEEE
Confidence 889999999864
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.36 E-value=2.3e-12 Score=122.35 Aligned_cols=140 Identities=22% Similarity=0.230 Sum_probs=100.0
Q ss_pred ccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccccCcc
Q 041067 576 KHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISSGNIS 655 (770)
Q Consensus 576 ~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~~L~ 655 (770)
...++|+.|++++|..-...+|. .+..+++|++|++++|. +..+ ..++.+++|++|++++|.....
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~--~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~---------- 86 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEG--LTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGG---------- 86 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSS--CCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSC----------
T ss_pred CCcccCCEEECCCCCCChhhHHH--HHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchH----------
Confidence 44588999999998631125665 46889999999999998 5555 6688899999999998763222
Q ss_pred EEeccCcCccccCcccccCCCCCEEeccCCCCCCCCC--cccCCCCCCcEEEeecCCCCcccC---cccCCCCCCcEEEc
Q 041067 656 WLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLP--RSLWMLKSLGVLNLSGCSNLQRLP---ECLAQFSSPIILNL 730 (770)
Q Consensus 656 ~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~~lp---~~l~~l~~L~~L~L 730 (770)
+|..+..+++|++|++++|.. ..+| ..+..+++|++|++++|...+..+ ..+..+++|+.|++
T Consensus 87 -----------~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 87 -----------LDMLAEKLPNLTHLNLSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp -----------CCHHHHHCTTCCEEECBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred -----------HHHHHhhCCCCCEEeccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecC
Confidence 444555677777777777764 4443 567777888888888765443332 26778888888888
Q ss_pred cCCCCcccchh
Q 041067 731 AKTNIERIPKS 741 (770)
Q Consensus 731 ~~~~l~~lp~~ 741 (770)
++|.+..+|.+
T Consensus 155 ~~n~~~~~~~~ 165 (168)
T 2ell_A 155 YDREDQEAPDS 165 (168)
T ss_dssp EETTSCBCCSS
T ss_pred CCCChhhcccc
Confidence 88887777754
No 133
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.35 E-value=1.7e-10 Score=125.12 Aligned_cols=259 Identities=15% Similarity=0.148 Sum_probs=152.4
Q ss_pred CCCCCcccchHHHHHHHHhhcCC--CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC-----C-ceEEEEecchhhccCC
Q 041067 159 DNKNKLVGVESKVEEIESILGVE--SKDVYSLGIWGIGGIGKTTIARAIFDKISGDF-----E-GSCFLENVREESQRSG 230 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~-~~~~~~~~~~~~~~~~ 230 (770)
..++.++||+++++++..++... ....+.+.|+|++|+||||+|+.+++.....+ . ..+|+. ... ..
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~-~~~---~~- 90 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN-ARH---RE- 90 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE-TTT---SC-
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE-CCc---CC-
Confidence 34478999999999999988532 34466899999999999999999998864421 2 233443 222 12
Q ss_pred CHHHHHHHHHHHHhcCCCCc-----chHHHHHHHHC--CCcEEEEEeCCCChHh----HHHHHhcccCC-----CCCceE
Q 041067 231 GLSCLQQKLLSNLLKHKNVM-----PFIDLIFRRLS--RMKVLIVFDDVTCLSQ----LQSLIGSLYWL-----TPVSRI 294 (770)
Q Consensus 231 ~~~~l~~~ll~~~~~~~~~~-----~~~~~l~~~L~--~kr~LlVLDdv~~~~~----~~~l~~~~~~~-----~~gs~I 294 (770)
....+...++..+....... +....+.+.+. +++.+||||+++.... .+.+...+.+. ..+..+
T Consensus 91 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 170 (387)
T 2v1u_A 91 TPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSL 170 (387)
T ss_dssp SHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEE
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEE
Confidence 45566667776664322111 33556666663 4689999999987542 23332222222 445678
Q ss_pred EEEcCchhhh--------hhcCcceEEEeCccChHHHHHHHH--------------------HhccC---CCch-hHHHH
Q 041067 295 IITTRNKQVL--------RNWGVRKIYEMKALEYHHAIELFI--------------------MKYAQ---GVPL-ALKVL 342 (770)
Q Consensus 295 ivTTR~~~v~--------~~~~~~~~~~l~~L~~~ea~~Lf~--------------------~~~~~---glPL-al~~~ 342 (770)
|.||+..... ..++ ...+.+++++.++..+++. +++++ |.|- ++..+
T Consensus 171 I~~t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 171 VGITNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp EEECSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred EEEECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 8888765321 1111 2588999999999999886 33343 5552 22222
Q ss_pred hhHhc-----CC---CHHHHHHHHHHHHhccchhHHHHHHHhHhcCCHHHHHHHhhcccccCCC---ChhHH----HHHH
Q 041067 343 GCFLY-----ER---EKEVWESAIDKLQRILLASIFEVLKISYDSLDDKEKNIFLDVACFFQGE---DVDPV----MKFF 407 (770)
Q Consensus 343 g~~L~-----~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~---~~~~l----~~~~ 407 (770)
..... +. +.+.+..+++... ...+.-++..|+++++..+..++.+..+. ....+ ..+.
T Consensus 250 ~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
T 2v1u_A 250 RVAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELT 322 (387)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 11110 11 3444444444331 22455667899999988888777543332 22322 2223
Q ss_pred HhcCCCc------hhhHHHhhhccceeEe
Q 041067 408 NASGFYP------EIGMSVLVDKSLIAID 430 (770)
Q Consensus 408 ~~~g~~~------~~~~~~L~~~sLi~~~ 430 (770)
...|..+ ...++.|...+++...
T Consensus 323 ~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 323 STLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 3333222 2447888888888874
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.34 E-value=1.2e-12 Score=121.58 Aligned_cols=128 Identities=22% Similarity=0.161 Sum_probs=98.6
Q ss_pred ccceeEEeccCCCCC-cccCccCCCCCCCcEEEecCCCCCCccCCccccCccEEeccCcCccccCcccccCCCCCEEecc
Q 041067 605 LNKLVLLNLRGSKSL-KRLPSRIFNLEFLTKLNLSGCSKLKRLPEISSGNISWLFLRETAIEELPSSIERLHRLGYLDLL 683 (770)
Q Consensus 605 L~~L~~L~L~~~~~l-~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~ 683 (770)
.++|+.|++++|... ..+|..+..+++|++|++++|. +..+ ..+..+++|++|+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~----------------------l~~~-~~~~~l~~L~~L~Ls 72 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG----------------------LTSI-ANLPKLNKLKKLELS 72 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC----------------------CCCC-TTCCCCTTCCEEECC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC----------------------CCCc-hhhhcCCCCCEEECC
Confidence 467888888888754 4778777788888888888764 3333 456777888888888
Q ss_pred CCCCCCCCCcccCCCCCCcEEEeecCCCCcc-cCcccCCCCCCcEEEccCCCCcccch----hhhCCCCCcEEeccc
Q 041067 684 DCKRLKSLPRSLWMLKSLGVLNLSGCSNLQR-LPECLAQFSSPIILNLAKTNIERIPK----SISQLLMLRYLLLSY 755 (770)
Q Consensus 684 ~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~-lp~~l~~l~~L~~L~L~~~~l~~lp~----~l~~l~~L~~L~l~~ 755 (770)
+|...+.+|..+..+++|++|++++|...+. .|..++.+++|+.|++++|.++.+|. .+..+++|+.|++++
T Consensus 73 ~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp SSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8887666777777788888888888765442 34778889999999999999987776 678899999998864
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=1.5e-13 Score=161.18 Aligned_cols=118 Identities=21% Similarity=0.239 Sum_probs=52.8
Q ss_pred ccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc
Q 041067 572 WDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS 651 (770)
Q Consensus 572 ~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 651 (770)
+..+..+++|+.|+|+++.. ..+|. .+.++++|++|+|++|. +..+|..++.|++|++|+|++|. +..+|..+.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l--~~l~~--~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~ 290 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQI--FNISA--NIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELG 290 (727)
T ss_dssp -----CCCCCCEEECTTSCC--SCCCG--GGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGG
T ss_pred hhhhccCCCCcEEECCCCCC--CCCCh--hhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhc
Confidence 33344444444444444332 12222 22244445555555444 22445445555555555555544 234444333
Q ss_pred --cCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCccc
Q 041067 652 --GNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSL 695 (770)
Q Consensus 652 --~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l 695 (770)
.+|++|+|++|.+..+|.+++.+++|++|+|++|...+.+|..+
T Consensus 291 ~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp GGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 44555555555555555555555555555555555444444433
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.32 E-value=7e-13 Score=155.45 Aligned_cols=147 Identities=24% Similarity=0.347 Sum_probs=98.8
Q ss_pred CCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc--cCccEEeccCcCccccCcccccCCCCC
Q 041067 601 LMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS--GNISWLFLRETAIEELPSSIERLHRLG 678 (770)
Q Consensus 601 ~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~l~~~~i~~lp~~i~~l~~L~ 678 (770)
.+..+.+|+.|+|++|. +..+|..++.+++|++|+|++|. +..+|..+. .+|++|+|++|.+..+|.+++.+++|+
T Consensus 219 ~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp ---CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred hhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence 46677888888888887 55788878888888888888876 447776555 778888888888888888888888888
Q ss_pred EEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCC-CcEEEccCCCCc-ccchhhhCCCCCcEEecccC
Q 041067 679 YLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSS-PIILNLAKTNIE-RIPKSISQLLMLRYLLLSYS 756 (770)
Q Consensus 679 ~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~-L~~L~L~~~~l~-~lp~~l~~l~~L~~L~l~~c 756 (770)
+|+|++|. ++.+|..++++++|++|+|++|...+.+|..+..+.. +..|++++|.++ .+|. .|+.|++++|
T Consensus 297 ~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 297 YFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp EEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred EEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 88888776 3577777888888888888887777777766544321 123567777776 4443 4566677766
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=3.5e-12 Score=122.04 Aligned_cols=128 Identities=20% Similarity=0.173 Sum_probs=76.4
Q ss_pred CCccceeEEeccCCCCCcccCccCCCCC-CCcEEEecCCCCCCccCCccccCccEEeccCcCccccCcccccCCCCCEEe
Q 041067 603 PRLNKLVLLNLRGSKSLKRLPSRIFNLE-FLTKLNLSGCSKLKRLPEISSGNISWLFLRETAIEELPSSIERLHRLGYLD 681 (770)
Q Consensus 603 ~~L~~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~L~~~~~l~~lp~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~ 681 (770)
.++.+|+.|++++|. +..+|. +..+. +|++|++++| .+..+ ..+..+++|++|+
T Consensus 16 ~~~~~L~~L~l~~n~-l~~i~~-~~~~~~~L~~L~Ls~N----------------------~l~~~-~~l~~l~~L~~L~ 70 (176)
T 1a9n_A 16 TNAVRDRELDLRGYK-IPVIEN-LGATLDQFDAIDFSDN----------------------EIRKL-DGFPLLRRLKTLL 70 (176)
T ss_dssp ECTTSCEEEECTTSC-CCSCCC-GGGGTTCCSEEECCSS----------------------CCCEE-CCCCCCSSCCEEE
T ss_pred CCcCCceEEEeeCCC-CchhHH-hhhcCCCCCEEECCCC----------------------CCCcc-cccccCCCCCEEE
Confidence 345556666666665 334443 33333 5555555554 44444 3456666666666
Q ss_pred ccCCCCCCCCCccc-CCCCCCcEEEeecCCCCcccCc--ccCCCCCCcEEEccCCCCcccchh----hhCCCCCcEEecc
Q 041067 682 LLDCKRLKSLPRSL-WMLKSLGVLNLSGCSNLQRLPE--CLAQFSSPIILNLAKTNIERIPKS----ISQLLMLRYLLLS 754 (770)
Q Consensus 682 L~~~~~~~~lp~~l-~~l~~L~~L~l~~~~~~~~lp~--~l~~l~~L~~L~L~~~~l~~lp~~----l~~l~~L~~L~l~ 754 (770)
+++|.. ..+|..+ ..+++|++|++++|.. +.+|. .+..+++|+.|++++|+++.+|.. +..+++|+.|+++
T Consensus 71 Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 71 VNNNRI-CRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp CCSSCC-CEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred CCCCcc-cccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCC
Confidence 666653 3444333 6666677777766543 45554 566677777777777777766664 6677777777777
Q ss_pred cCc
Q 041067 755 YSE 757 (770)
Q Consensus 755 ~c~ 757 (770)
+|+
T Consensus 149 ~n~ 151 (176)
T 1a9n_A 149 KVK 151 (176)
T ss_dssp ECC
T ss_pred cCC
Confidence 665
No 138
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.30 E-value=1.6e-10 Score=125.31 Aligned_cols=261 Identities=14% Similarity=0.135 Sum_probs=149.1
Q ss_pred CCCCCCcccchHHHHHHHHhhcCC--CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCC---ceEEEEecchhhccCCCH
Q 041067 158 RDNKNKLVGVESKVEEIESILGVE--SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFE---GSCFLENVREESQRSGGL 232 (770)
Q Consensus 158 ~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~ 232 (770)
...++.++||+++++.+.+++... ....+.+.|+|++|+||||||+.+++.....+. ..+|+. .... . ..
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-~~~~---~-~~ 90 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-TRQI---D-TP 90 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-HHHH---C-SH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-CCCC---C-CH
Confidence 344578999999999999988642 344668999999999999999999998766542 334444 2221 1 33
Q ss_pred HHHHHHHHHHHhcCCC-----CcchHHHHHHHHC--CCcEEEEEeCCCChH------hHHHHHhcccC-CCCCceEEEEc
Q 041067 233 SCLQQKLLSNLLKHKN-----VMPFIDLIFRRLS--RMKVLIVFDDVTCLS------QLQSLIGSLYW-LTPVSRIIITT 298 (770)
Q Consensus 233 ~~l~~~ll~~~~~~~~-----~~~~~~~l~~~L~--~kr~LlVLDdv~~~~------~~~~l~~~~~~-~~~gs~IivTT 298 (770)
..+...++..+..... ..+....+.+.+. +++.+||+|+++... .+..+...... ...+..+|+||
T Consensus 91 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~ 170 (386)
T 2qby_A 91 YRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGIT 170 (386)
T ss_dssp HHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEE
Confidence 4444555444322111 1133445555554 458999999996633 33444333322 23456678888
Q ss_pred CchhhhhhcC-------cceEEEeCccChHHHHHHHH--------------------HhccC---CCchhH-HHHhhHhc
Q 041067 299 RNKQVLRNWG-------VRKIYEMKALEYHHAIELFI--------------------MKYAQ---GVPLAL-KVLGCFLY 347 (770)
Q Consensus 299 R~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~--------------------~~~~~---glPLal-~~~g~~L~ 347 (770)
+.......+. ....+.+++++.++..+++. ++.++ |.|..+ ..+.....
T Consensus 171 ~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 171 NDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGE 250 (386)
T ss_dssp SCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7664432221 12589999999999999986 22222 444321 11111100
Q ss_pred -----CC---CHHHHHHHHHHHHhccchhHHHHHHHhHhcCCHHHHHHHhhcccccC-C---CChhHH----HHHHHhcC
Q 041067 348 -----ER---EKEVWESAIDKLQRILLASIFEVLKISYDSLDDKEKNIFLDVACFFQ-G---EDVDPV----MKFFNASG 411 (770)
Q Consensus 348 -----~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~-~---~~~~~l----~~~~~~~g 411 (770)
+. +.+.++.+++.. ....+.-++..++..++..+..++.+.+ + +....+ ..+....|
T Consensus 251 ~a~~~~~~~i~~~~v~~a~~~~-------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g 323 (386)
T 2qby_A 251 IAERMKDTKVKEEYVYMAKEEI-------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG 323 (386)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHH-------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCccCHHHHHHHHHHH-------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC
Confidence 00 233333333222 1234566778899999988888875432 2 223222 22233333
Q ss_pred CCc------hhhHHHhhhccceeEe
Q 041067 412 FYP------EIGMSVLVDKSLIAID 430 (770)
Q Consensus 412 ~~~------~~~~~~L~~~sLi~~~ 430 (770)
..+ ..+++.|.+.++|...
T Consensus 324 ~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 324 VEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 222 3458888999998764
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.28 E-value=3.7e-14 Score=163.54 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=55.5
Q ss_pred CCCCCceEEEecCCCCCCccCCcc-CCCCCCCCceeEEEEcCC-CCCC--CCCCC-CcccccccccCCCCccc-----cc
Q 041067 503 KMPKLRFLKFYSSSFNGENKCKIS-YLQDPGFGEVKYLHWYGY-PLKS--LPSNL-SAEKLMLLEVPDSDIEQ-----LW 572 (770)
Q Consensus 503 ~l~~Lr~L~l~~~~l~~~~p~~l~-~l~~~~l~~Lr~L~l~~~-~l~~--lp~~~-~~~~L~~L~l~~~~i~~-----l~ 572 (770)
.+++|+.|+++++.+++..+..+. .+ ++|+.|++.+| .+.. ++... .+++|++|++++|.+.. ++
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~-----~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~ 177 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSF-----KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS 177 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHC-----TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGG
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhC-----CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHH
Confidence 455566666665554442222221 12 35555555555 2221 22211 23455555655555332 22
Q ss_pred cccccCcCCcEEccCcCcCccccCCC--CC-CCCCccceeEEeccCCCCCcccCccCCCCCCCcEEEec
Q 041067 573 DCVKHYRKLNQIIPAACNKLIAKTPN--PM-LMPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLS 638 (770)
Q Consensus 573 ~~~~~l~~L~~L~L~~~~~l~~~~p~--~~-~~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~ 638 (770)
.....+++|+.|++++|.. .+.. +. ...++++|++|++++|.....+|..+..+++|++|+++
T Consensus 178 ~~~~~~~~L~~L~l~~~~~---~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLAS---EVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp GSCTTCCCCCEEECTTCCS---CCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred HHhhcCCcCcEEEecccCC---cCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 2233445566666655430 0000 00 01223555556665554444444444455555555433
No 140
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.27 E-value=2.5e-13 Score=128.39 Aligned_cols=71 Identities=20% Similarity=0.210 Sum_probs=60.3
Q ss_pred hhhhhhhhcCCCCCCCcchHHHHHHHHhccceeEeecCCccCchhhHHHHHHHHHh-hccCCcEEEeEEEEe
Q 041067 12 YKVAELIKRRGVHGGDEISKSLVNVIEASAISVIVFSEGYASSRSCLDELVKILEC-KKEYAQIVIPFFYRV 82 (770)
Q Consensus 12 ~~~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~ivv~s~~y~~s~~cl~El~~i~~~-~~~~~~~v~pvf~~v 82 (770)
+++.+|+|++++.+|+.|.++|.+||++|+++|+|+||+|++|.||+.|+..++.+ .+..+++||||||+-
T Consensus 63 ~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~ 134 (178)
T 2j67_A 63 GSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEP 134 (178)
T ss_dssp -CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHHHHTTCC-------CEEEEESSC
T ss_pred CCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHHHHHHHHHHHhcCCCEEEEEEecC
Confidence 34678999999999999999999999999999999999999999999999999975 456678899999974
No 141
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.25 E-value=1.6e-13 Score=126.34 Aligned_cols=75 Identities=20% Similarity=0.202 Sum_probs=65.9
Q ss_pred hhhhhhhcCCCCCCCcchHHHHHHHHhccceeEeecCCccCchhhHHHHHHHHH-hhccCCcEEEeEEEE-ecCCcc
Q 041067 13 KVAELIKRRGVHGGDEISKSLVNVIEASAISVIVFSEGYASSRSCLDELVKILE-CKKEYAQIVIPFFYR-VDPSDV 87 (770)
Q Consensus 13 ~~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~ivv~s~~y~~s~~cl~El~~i~~-~~~~~~~~v~pvf~~-v~p~~v 87 (770)
++.+|+|++++.+|+.|.++|.+||++|+++|||+||+|+.|.||+.|+..++. +.+..++.||||||+ +++..+
T Consensus 34 g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~ 110 (149)
T 1fyx_A 34 PFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLEPIEKKAI 110 (149)
T ss_dssp CCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred CeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence 466899999999999999999999999999999999999999999999999985 456677889999996 544433
No 142
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.25 E-value=2.7e-13 Score=126.18 Aligned_cols=70 Identities=21% Similarity=0.245 Sum_probs=63.8
Q ss_pred hhhhhhcCCCCCCCcchHHHHHHHH-hccceeEeecCCccCchhhHHHHHHHHHhh-ccCCcEEEeEEEEec
Q 041067 14 VAELIKRRGVHGGDEISKSLVNVIE-ASAISVIVFSEGYASSRSCLDELVKILECK-KEYAQIVIPFFYRVD 83 (770)
Q Consensus 14 ~~~~~d~~~~~~g~~~~~~l~~ai~-~s~~~ivv~s~~y~~s~~cl~El~~i~~~~-~~~~~~v~pvf~~v~ 83 (770)
+.+|+|++++.+|+.|.++|.+||+ .|+++|+|+|++|+.|.||..|+..++++. +..++.||||||+.-
T Consensus 45 ~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~~ 116 (160)
T 2js7_A 45 LKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYKAM 116 (160)
T ss_dssp CCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHHHHHHHHCTTHHHHTEEEEESSCC
T ss_pred eEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHHHHHHHHHHccCCCEEEEEEEccc
Confidence 5689999999999999999999999 699999999999999999999999999974 445678999999864
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=4.5e-11 Score=116.02 Aligned_cols=125 Identities=27% Similarity=0.256 Sum_probs=75.6
Q ss_pred cEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCcc--CCCCCCCcEEEecCCCCCCccCCccc--cCccEE
Q 041067 582 NQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSR--IFNLEFLTKLNLSGCSKLKRLPEISS--GNISWL 657 (770)
Q Consensus 582 ~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~--i~~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L 657 (770)
+.++++++. + ..+|. .++ .+|++|++++|. +..+|.. ++.+++|++|++++|......|..+. .+|++|
T Consensus 11 ~~l~~s~~~-l-~~ip~--~~~--~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRG-L-KEIPR--DIP--LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSC-C-SSCCS--CCC--TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCCCC-c-CcCcc--CCC--CCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 456666543 2 44443 222 266777777665 4444432 56677777777777664443344443 667777
Q ss_pred eccCcCccccCcc-cccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCc
Q 041067 658 FLRETAIEELPSS-IERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQ 713 (770)
Q Consensus 658 ~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~ 713 (770)
++++|.+..+|.. +..+++|++|++++|...+..|..+..+++|++|++++|....
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 7777777765543 6667777777777776655556666777777777777665543
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=6.3e-11 Score=113.35 Aligned_cols=125 Identities=20% Similarity=0.179 Sum_probs=82.4
Q ss_pred eeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCc-cc--cCccEEeccCcCccccCcc-cccCCCCCEEecc
Q 041067 608 LVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEI-SS--GNISWLFLRETAIEELPSS-IERLHRLGYLDLL 683 (770)
Q Consensus 608 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~-~~--~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~ 683 (770)
.+.++++++. +..+|..+ .++|++|++++|. ++.+|.. +. .+|++|++++|.+..+|.. +..+++|++|+++
T Consensus 9 ~~~l~~~~~~-l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSC-CSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCC-CccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 4667777665 66677554 3678888888876 4445442 22 6777777777777777654 4677777777777
Q ss_pred CCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEEccCCCCc
Q 041067 684 DCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILNLAKTNIE 736 (770)
Q Consensus 684 ~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~~~l~ 736 (770)
+|...+..+..+..+++|++|++++|...+..+..+..+++|+.|++++|++.
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 77654433344667777777777776544333334566777777777777766
No 145
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.23 E-value=1.5e-12 Score=120.91 Aligned_cols=71 Identities=15% Similarity=0.056 Sum_probs=64.7
Q ss_pred hhhhhhcCCCCCCCcchHHHHHHHHhccceeEeecCCcc-CchhhHHHHHHHHHhh-ccCCcEEEeEEEEecC
Q 041067 14 VAELIKRRGVHGGDEISKSLVNVIEASAISVIVFSEGYA-SSRSCLDELVKILECK-KEYAQIVIPFFYRVDP 84 (770)
Q Consensus 14 ~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~ivv~s~~y~-~s~~cl~El~~i~~~~-~~~~~~v~pvf~~v~p 84 (770)
+.+|+|++++.+|+.|.++|.+||++|+++|||+|++|+ .|.||..|+..++.+. +..+..||||||.-.+
T Consensus 42 ~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 42 YKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp CCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHHTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred eEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhhcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 568999999999999999999999999999999999996 9999999999999984 6677899999987533
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.23 E-value=3.5e-13 Score=155.35 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=37.4
Q ss_pred CCCCcEEEeecCCCCcccCccc-CCCCCCcEEEccCCCCc--ccchhhhCCCCCcEEecccCcc
Q 041067 698 LKSLGVLNLSGCSNLQRLPECL-AQFSSPIILNLAKTNIE--RIPKSISQLLMLRYLLLSYSES 758 (770)
Q Consensus 698 l~~L~~L~l~~~~~~~~lp~~l-~~l~~L~~L~L~~~~l~--~lp~~l~~l~~L~~L~l~~c~~ 758 (770)
+++|+.|++++|...+..+..+ ..+++|+.|++++|.++ .+...+..+++|+.|++++|+.
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 5566666666665433333333 55677777777777775 2333445577788888887763
No 147
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.21 E-value=5.9e-10 Score=121.02 Aligned_cols=288 Identities=14% Similarity=0.143 Sum_probs=160.6
Q ss_pred CCCCcccchHHHHHHHHhhcC----CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC-CceEEEEecchhhccCCCHHH
Q 041067 160 NKNKLVGVESKVEEIESILGV----ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDF-EGSCFLENVREESQRSGGLSC 234 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~ 234 (770)
.++.++||+.+++++..++.. +....+.+.|+|.+|+||||+|+.+++...... ...+++. ... .. ....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~-~~~---~~-~~~~ 89 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN-GFI---YR-NFTA 89 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE-TTT---CC-SHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe-Ccc---CC-CHHH
Confidence 347899999999999988864 222334899999999999999999999876553 2334443 221 12 4455
Q ss_pred HHHHHHHHHhcCCCC-----cchHHHHHHHHC--CCcEEEEEeCCCCh--HhHHHHHhcccCCC----CCceEEEEcCch
Q 041067 235 LQQKLLSNLLKHKNV-----MPFIDLIFRRLS--RMKVLIVFDDVTCL--SQLQSLIGSLYWLT----PVSRIIITTRNK 301 (770)
Q Consensus 235 l~~~ll~~~~~~~~~-----~~~~~~l~~~L~--~kr~LlVLDdv~~~--~~~~~l~~~~~~~~----~gs~IivTTR~~ 301 (770)
+...++..+...... ......+.+.+. +++.+||||+++.. +....+...+.... .+..||+||+..
T Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 90 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 666666655332111 133444555543 56899999999764 34555544442211 466788888776
Q ss_pred hhhhhcC-------cceEEEeCccChHHHHHHHH--Hhcc----CCCchhHHHHhhHhc--------CCCHHHHHHHHHH
Q 041067 302 QVLRNWG-------VRKIYEMKALEYHHAIELFI--MKYA----QGVPLALKVLGCFLY--------EREKEVWESAIDK 360 (770)
Q Consensus 302 ~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~--~~~~----~glPLal~~~g~~L~--------~~~~~~w~~~l~~ 360 (770)
+...... ....+.+++++.++..+++. +... .--|-++..++..-. ..+.......++.
T Consensus 170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~ 249 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR 249 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHH
T ss_pred hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHH
Confidence 4433221 12379999999999998886 1110 011223333333331 1122222222211
Q ss_pred HHh-----c----cchhHHHH--------HHHhHhcCCHHHHHHHhhccccc---CC--CChhHHHHHH----HhcCCCc
Q 041067 361 LQR-----I----LLASIFEV--------LKISYDSLDDKEKNIFLDVACFF---QG--EDVDPVMKFF----NASGFYP 414 (770)
Q Consensus 361 l~~-----~----~~~~i~~~--------l~~sy~~L~~~~k~~fl~~a~f~---~~--~~~~~l~~~~----~~~g~~~ 414 (770)
... . ..+.+..+ +.-.++.|+.+.+.++..++.+. .+ .....+...+ ...|..+
T Consensus 250 a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 329 (389)
T 1fnn_A 250 SAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERP 329 (389)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCC
Confidence 110 0 01112222 22336678888888888787654 22 3334443332 2233222
Q ss_pred ------hhhHHHhhhccceeEecC-------CeEE-------ecHHHHHHHHHHHhhh
Q 041067 415 ------EIGMSVLVDKSLIAIDSY-------NKIT-------MHDLLQELGKEIVRQE 452 (770)
Q Consensus 415 ------~~~~~~L~~~sLi~~~~~-------~~~~-------mHdl~~~~~~~i~~~e 452 (770)
...++.|.++++|..... +++. .|+++..+...+..+|
T Consensus 330 ~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 330 RVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp CCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 245889999999987533 2222 4566666655555443
No 148
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.21 E-value=2.4e-11 Score=112.69 Aligned_cols=110 Identities=19% Similarity=0.216 Sum_probs=95.2
Q ss_pred cCccEEeccCcCcc--ccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcccCcccCCCCCCcEEE
Q 041067 652 GNISWLFLRETAIE--ELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFSSPIILN 729 (770)
Q Consensus 652 ~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~ 729 (770)
++|+.|++++|.+. .+|..+..+++|++|++++|...+ + ..+..+++|++|++++|...+.+|..++.+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45677777777777 788888999999999999997544 4 6789999999999999988777888888899999999
Q ss_pred ccCCCCcccc--hhhhCCCCCcEEecccCccCCcCCC
Q 041067 730 LAKTNIERIP--KSISQLLMLRYLLLSYSESLQSSPK 764 (770)
Q Consensus 730 L~~~~l~~lp--~~l~~l~~L~~L~l~~c~~L~~lP~ 764 (770)
+++|.++.+| ..+..+++|+.|++++|+ ++.+|.
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~ 130 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLND 130 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHH
Confidence 9999999765 789999999999999996 777765
No 149
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=1.3e-10 Score=112.77 Aligned_cols=124 Identities=21% Similarity=0.225 Sum_probs=84.8
Q ss_pred cEEEecCCCCCCccCCccccCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCC
Q 041067 633 TKLNLSGCSKLKRLPEISSGNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNL 712 (770)
Q Consensus 633 ~~L~L~~~~~l~~lp~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~ 712 (770)
++++++++. ++.+|.....+|++|++++|.+..+|..+..+++|++|++++|...+..|..+.++++|++|++++|...
T Consensus 13 ~~l~~~~~~-l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSC-CSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCC-CCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 456666654 5666665556777777777777777777777777777777777655444455777777777777776655
Q ss_pred cccCcccCCCCCCcEEEccCCCCcccch-hhhCCCCCcEEecccCc
Q 041067 713 QRLPECLAQFSSPIILNLAKTNIERIPK-SISQLLMLRYLLLSYSE 757 (770)
Q Consensus 713 ~~lp~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~c~ 757 (770)
...|..+..+++|+.|+|++|.++.+|. .+..+++|+.|++++|+
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 5555567777777777777777776665 35667777777777765
No 150
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.18 E-value=3.2e-11 Score=115.29 Aligned_cols=131 Identities=14% Similarity=0.116 Sum_probs=86.6
Q ss_pred cccCcCCcEEccCcCcCccccCCCCCCCCCcc-ceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccccC
Q 041067 575 VKHYRKLNQIIPAACNKLIAKTPNPMLMPRLN-KLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISSGN 653 (770)
Q Consensus 575 ~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~-~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~~ 653 (770)
...+.+|+.|++++|. + ..+| .+..+. +|++|++++|. +..+ ..++.+++|++|++++|.
T Consensus 15 ~~~~~~L~~L~l~~n~-l-~~i~---~~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~------------ 75 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK-I-PVIE---NLGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNR------------ 75 (176)
T ss_dssp EECTTSCEEEECTTSC-C-CSCC---CGGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSC------------
T ss_pred cCCcCCceEEEeeCCC-C-chhH---HhhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCc------------
Confidence 4568899999999975 3 3444 345555 99999999998 5555 567788888888888865
Q ss_pred ccEEeccCcCccccCccc-ccCCCCCEEeccCCCCCCCCCc--ccCCCCCCcEEEeecCCCCcccCcc----cCCCCCCc
Q 041067 654 ISWLFLRETAIEELPSSI-ERLHRLGYLDLLDCKRLKSLPR--SLWMLKSLGVLNLSGCSNLQRLPEC----LAQFSSPI 726 (770)
Q Consensus 654 L~~L~l~~~~i~~lp~~i-~~l~~L~~L~L~~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~lp~~----l~~l~~L~ 726 (770)
+..+|..+ ..+++|++|++++|.. +.+|. .+..+++|+.|++++|.. ..+|.. +..+++|+
T Consensus 76 ----------l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~ 143 (176)
T 1a9n_A 76 ----------ICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVR 143 (176)
T ss_dssp ----------CCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCS
T ss_pred ----------ccccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccc
Confidence 33334333 5566666666666653 44554 556666666666666543 344543 66677777
Q ss_pred EEEccCCCCc
Q 041067 727 ILNLAKTNIE 736 (770)
Q Consensus 727 ~L~L~~~~l~ 736 (770)
.|++++|...
T Consensus 144 ~Ld~~~n~~~ 153 (176)
T 1a9n_A 144 VLDFQKVKLK 153 (176)
T ss_dssp EETTEECCHH
T ss_pred eeCCCcCCHH
Confidence 7777766654
No 151
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.11 E-value=7.9e-10 Score=105.64 Aligned_cols=124 Identities=17% Similarity=0.207 Sum_probs=57.0
Q ss_pred cEEEecCCCCCCccCCccccCccEEeccCcCccccCcc-cccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCC
Q 041067 633 TKLNLSGCSKLKRLPEISSGNISWLFLRETAIEELPSS-IERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSN 711 (770)
Q Consensus 633 ~~L~L~~~~~l~~lp~~~~~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 711 (770)
+.++++++. +..+|.....+|++|++++|.+..+|.. +..+++|++|++++|...+..+..+..+++|+.|++++|..
T Consensus 10 ~~l~~~~~~-l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 10 TEIRCNSKG-LTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TEEECCSSC-CSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCC-CccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 444444433 4444433334555555555555544432 34455555555555443222222234555555555555443
Q ss_pred CcccCcccCCCCCCcEEEccCCCCcccchh-hhCCCCCcEEecccCc
Q 041067 712 LQRLPECLAQFSSPIILNLAKTNIERIPKS-ISQLLMLRYLLLSYSE 757 (770)
Q Consensus 712 ~~~lp~~l~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~c~ 757 (770)
.+..+..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|+
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 333333344555555555555555544443 2445555555555554
No 152
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.08 E-value=1.9e-09 Score=108.38 Aligned_cols=158 Identities=14% Similarity=0.115 Sum_probs=95.9
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHH
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKL 239 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 239 (770)
....++||+..++.+..++..+. ..+.+.|+|.+|+||||+|+.+++.....+....+-+ . ..... ..+
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~--------~-~~~~~-~~~ 89 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC--------G-VCDNC-REI 89 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC--------S-CSHHH-HHH
T ss_pred cHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC--------c-ccHHH-HHH
Confidence 34569999999999999986433 2347899999999999999999988654332110000 0 00000 000
Q ss_pred HHHH----hc-CCCCcch---HHHHHHH-----HCCCcEEEEEeCCCC--hHhHHHHHhcccCCCCCceEEEEcCchhhh
Q 041067 240 LSNL----LK-HKNVMPF---IDLIFRR-----LSRMKVLIVFDDVTC--LSQLQSLIGSLYWLTPVSRIIITTRNKQVL 304 (770)
Q Consensus 240 l~~~----~~-~~~~~~~---~~~l~~~-----L~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IivTTR~~~v~ 304 (770)
.... .. ....... ...+.+. ..+++.+||+||++. ...++.+...+.....+.++|+||+.....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 90 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp HTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred hccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 0000 00 0000001 1111111 134679999999965 456777777666556788899988765422
Q ss_pred h-h-cCcceEEEeCccChHHHHHHHH
Q 041067 305 R-N-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 305 ~-~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
. . ......+++++++.++..+++.
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~ 195 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLE 195 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHH
Confidence 1 1 1224689999999999999986
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.08 E-value=5.4e-10 Score=106.43 Aligned_cols=107 Identities=19% Similarity=0.176 Sum_probs=81.2
Q ss_pred CcEEEecCCCCCCccCCccccCccEEeccCcCcccc-CcccccCCCCCEEeccCCCCCCCCCcc-cCCCCCCcEEEeecC
Q 041067 632 LTKLNLSGCSKLKRLPEISSGNISWLFLRETAIEEL-PSSIERLHRLGYLDLLDCKRLKSLPRS-LWMLKSLGVLNLSGC 709 (770)
Q Consensus 632 L~~L~L~~~~~l~~lp~~~~~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~l~~~ 709 (770)
-+.++++++. ++.+|.....+|++|++++|.+..+ |..+..+++|++|+|++|.. ..+|.. +..+++|++|++++|
T Consensus 14 ~~~l~~~~n~-l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIR-LASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCC-CCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC-CccChhHhCCcchhhEEECCCC
Confidence 4678888865 6788876668888899988888877 45678888888888888874 445544 578888888888887
Q ss_pred CCCcccCcccCCCCCCcEEEccCCCCcccch
Q 041067 710 SNLQRLPECLAQFSSPIILNLAKTNIERIPK 740 (770)
Q Consensus 710 ~~~~~lp~~l~~l~~L~~L~L~~~~l~~lp~ 740 (770)
...+..+..+..+++|+.|+|++|++...|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 6544333458888888888888888875554
No 154
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.08 E-value=1.2e-12 Score=127.89 Aligned_cols=130 Identities=21% Similarity=0.162 Sum_probs=89.0
Q ss_pred CcccCccCCCCCCCcEEEecCCCCCCccCCccc-cCccEEeccCcCccccCcccccCCCCCEEeccCCCCCCCCCcccCC
Q 041067 619 LKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS-GNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLKSLPRSLWM 697 (770)
Q Consensus 619 l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~ 697 (770)
++.+|..++.+++|++|++++|. +..+|.... ++|++|++++|.+..+|..+..+++|++|++++|.. ..+| .+..
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~-l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l-~~l~-~~~~ 113 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQI-ASLS-GIEK 113 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEE-ESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEEC-CCHH-HHHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCC-CccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcC-CcCC-cccc
Confidence 33444456666777777777664 444662222 677777777777777777777778888888888764 3455 5777
Q ss_pred CCCCcEEEeecCCCCcccC--cccCCCCCCcEEEccCCCCcccch-----------hhhCCCCCcEEe
Q 041067 698 LKSLGVLNLSGCSNLQRLP--ECLAQFSSPIILNLAKTNIERIPK-----------SISQLLMLRYLL 752 (770)
Q Consensus 698 l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~L~~~~l~~lp~-----------~l~~l~~L~~L~ 752 (770)
+++|+.|++++|... .+| ..+..+++|+.|++++|+++..+. .+..+++|+.|+
T Consensus 114 l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 114 LVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 888888888886543 333 367788888888888888764422 267888888887
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.06 E-value=6.8e-10 Score=105.30 Aligned_cols=106 Identities=22% Similarity=0.175 Sum_probs=84.9
Q ss_pred CCcEEEecCCCCCCccCCccccCccEEeccCcCcccc-CcccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecC
Q 041067 631 FLTKLNLSGCSKLKRLPEISSGNISWLFLRETAIEEL-PSSIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGC 709 (770)
Q Consensus 631 ~L~~L~L~~~~~l~~lp~~~~~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~ 709 (770)
+.+.++++++. ++.+|.....+|++|++++|.+..+ |..+..+++|++|+|++|...+..|..+..+++|++|++++|
T Consensus 10 ~~~~l~~s~n~-l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 10 SGTTVDCSGKS-LASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp ETTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEeCCCC-cCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 46789999876 7778877668899999999999988 556888999999999998855443444688999999999997
Q ss_pred CCCcccCcccCCCCCCcEEEccCCCCcc
Q 041067 710 SNLQRLPECLAQFSSPIILNLAKTNIER 737 (770)
Q Consensus 710 ~~~~~lp~~l~~l~~L~~L~L~~~~l~~ 737 (770)
...+..+..+..+++|+.|+|++|+++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 6655444568899999999999998773
No 156
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.02 E-value=1.9e-12 Score=126.61 Aligned_cols=128 Identities=20% Similarity=0.267 Sum_probs=90.8
Q ss_pred CCCccceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc--cCccEEeccCcCccccCcccccCCCCCE
Q 041067 602 MPRLNKLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS--GNISWLFLRETAIEELPSSIERLHRLGY 679 (770)
Q Consensus 602 ~~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~l~~~~i~~lp~~i~~l~~L~~ 679 (770)
+.++++|++|++++|. +..+| .+..+++|++|++++|. +..+|.... ++|++|++++|.+..+| .+..+++|++
T Consensus 44 ~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 44 LSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSE
T ss_pred HhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCE
Confidence 4456677777777765 44466 66677777777777775 456666544 67888888888888777 5788888888
Q ss_pred EeccCCCCCCCCC--cccCCCCCCcEEEeecCCCCcccCcc----------cCCCCCCcEEEccCCCCc
Q 041067 680 LDLLDCKRLKSLP--RSLWMLKSLGVLNLSGCSNLQRLPEC----------LAQFSSPIILNLAKTNIE 736 (770)
Q Consensus 680 L~L~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~~lp~~----------l~~l~~L~~L~L~~~~l~ 736 (770)
|++++|.. ..+| ..+..+++|++|++++|...+..|.. +..+++|+.|+ ++.++
T Consensus 120 L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 120 LYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EEESEEEC-CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EECCCCcC-CchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 88888874 3444 36788888999999887765554442 67888888886 55444
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.00 E-value=1.6e-09 Score=102.69 Aligned_cols=102 Identities=22% Similarity=0.180 Sum_probs=66.2
Q ss_pred ceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc--cCccEEeccCcCccccCcc-cccCCCCCEEecc
Q 041067 607 KLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS--GNISWLFLRETAIEELPSS-IERLHRLGYLDLL 683 (770)
Q Consensus 607 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~ 683 (770)
..+.++++++. +..+|..+ .++|++|++++|...+..|..+. .+|++|++++|.+..+|.. +..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~-l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKS-LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCC-cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 34667777665 56677655 36777777777763333344333 6777777777777777665 4677777777777
Q ss_pred CCCCCCCCCcccCCCCCCcEEEeecCCC
Q 041067 684 DCKRLKSLPRSLWMLKSLGVLNLSGCSN 711 (770)
Q Consensus 684 ~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 711 (770)
+|...+..|..+..+++|+.|++++|..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 7764433333467777777777777654
No 158
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.99 E-value=7.1e-09 Score=102.64 Aligned_cols=152 Identities=14% Similarity=0.241 Sum_probs=96.4
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC-CCceEEEEecchhhccCCCHHHHHHH
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD-FEGSCFLENVREESQRSGGLSCLQQK 238 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (770)
....++|+++.++.+..++.... .+.+.|+|.+|+|||++|+.+++.+... +...+...+... .. +...+...
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~ 88 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD---ER-GIDVVRHK 88 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC---TT-CHHHHHHH
T ss_pred CHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc---cc-ChHHHHHH
Confidence 34569999999999999996543 2348999999999999999999886433 332222221111 11 22222222
Q ss_pred HHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEcCchhhh-hh-cCcceEEE
Q 041067 239 LLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITTRNKQVL-RN-WGVRKIYE 314 (770)
Q Consensus 239 ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~v~-~~-~~~~~~~~ 314 (770)
+ ........ .-.+++.+||+||++.. ...+.+...+.....+.++|+||+..... .. ......+.
T Consensus 89 ~-~~~~~~~~----------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~ 157 (226)
T 2chg_A 89 I-KEFARTAP----------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (226)
T ss_dssp H-HHHHTSCC----------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred H-HHHhcccC----------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceee
Confidence 1 11111000 00257899999999764 34556666555556778899988765421 11 12235899
Q ss_pred eCccChHHHHHHHH
Q 041067 315 MKALEYHHAIELFI 328 (770)
Q Consensus 315 l~~L~~~ea~~Lf~ 328 (770)
+.+++.++..+++.
T Consensus 158 ~~~~~~~~~~~~l~ 171 (226)
T 2chg_A 158 FKPVPKEAMKKRLL 171 (226)
T ss_dssp CCCCCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH
Confidence 99999999999885
No 159
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.98 E-value=2.4e-09 Score=101.84 Aligned_cols=99 Identities=26% Similarity=0.331 Sum_probs=68.7
Q ss_pred eEEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc--cCccEEeccCcCccccCcc-cccCCCCCEEeccCC
Q 041067 609 VLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS--GNISWLFLRETAIEELPSS-IERLHRLGYLDLLDC 685 (770)
Q Consensus 609 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~ 685 (770)
+.++++++. +..+|..+. ++|++|++++|...+..|..+. ++|++|+|++|.+..+|.. +..+++|++|+|++|
T Consensus 15 ~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 567777666 577777663 6788888887764333344443 7788888888888877765 467788888888877
Q ss_pred CCCCCCCc-ccCCCCCCcEEEeecCCC
Q 041067 686 KRLKSLPR-SLWMLKSLGVLNLSGCSN 711 (770)
Q Consensus 686 ~~~~~lp~-~l~~l~~L~~L~l~~~~~ 711 (770)
... .+|. .+..+++|+.|++++|..
T Consensus 92 ~l~-~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 HLK-SIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCC-CCCTTTTTTCTTCSEEECCSSCB
T ss_pred ccc-eeCHHHhccccCCCEEEeCCCCc
Confidence 644 4444 377788888888887654
No 160
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=3.7e-09 Score=111.89 Aligned_cols=233 Identities=12% Similarity=0.112 Sum_probs=141.3
Q ss_pred CCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCCCCCCC-C-C--------cccccccccCCCCcccccc
Q 041067 504 MPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLKSLPSN-L-S--------AEKLMLLEVPDSDIEQLWD 573 (770)
Q Consensus 504 l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~~lp~~-~-~--------~~~L~~L~l~~~~i~~l~~ 573 (770)
+++|+.|++++|.+..- ...-..+ ..++++.+..+ .+|.. | . +.+|+.|++++ .++.++.
T Consensus 48 l~~L~~LdLs~n~i~~~-~~~~~~~-----~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~ 117 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMY-SGKAGTY-----PNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIED 117 (329)
T ss_dssp CTTCCEEEEEEEEECCE-EESSSSS-----GGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECT
T ss_pred hccCeEEecCcceeEEe-cCccccc-----ccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhH
Confidence 78899999998877610 0011111 22333433333 45542 2 3 57888888888 7877765
Q ss_pred c-cccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCC---CcccC-ccCCC--------------------
Q 041067 574 C-VKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKS---LKRLP-SRIFN-------------------- 628 (770)
Q Consensus 574 ~-~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~---l~~lp-~~i~~-------------------- 628 (770)
. +..+++|+.+++..+.. ..++. ..+.++.++..+.+..... ...+. ..+..
T Consensus 118 ~aF~~~~~L~~l~l~~n~i--~~i~~-~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~ 194 (329)
T 3sb4_A 118 AAFKGCDNLKICQIRKKTA--PNLLP-EALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEI 194 (329)
T ss_dssp TTTTTCTTCCEEEBCCSSC--CEECT-TSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHH
T ss_pred HHhhcCcccceEEcCCCCc--cccch-hhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHH
Confidence 4 67788888888887543 23333 3455556666665543110 00110 01112
Q ss_pred ------CCCCcEEEecCCCCCCccCCcc--ccCccEEeccCcCccccCcc-cccCCCCCEEeccCCCCCCCCCc-ccCCC
Q 041067 629 ------LEFLTKLNLSGCSKLKRLPEIS--SGNISWLFLRETAIEELPSS-IERLHRLGYLDLLDCKRLKSLPR-SLWML 698 (770)
Q Consensus 629 ------l~~L~~L~L~~~~~l~~lp~~~--~~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~-~l~~l 698 (770)
..++.++.+.++-....+.... ..+|+.+++.+|.+..+|.. +..+++|+.|++.++ ...++. .+.++
T Consensus 195 ~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~ 272 (329)
T 3sb4_A 195 MKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNC 272 (329)
T ss_dssp HHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTC
T ss_pred hhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCC
Confidence 2333444443321000000000 14788889988888888875 778889999999886 455554 47888
Q ss_pred CCCc-EEEeecCCCCccc-CcccCCCCCCcEEEccCCCCcccch-hhhCCCCCcEEec
Q 041067 699 KSLG-VLNLSGCSNLQRL-PECLAQFSSPIILNLAKTNIERIPK-SISQLLMLRYLLL 753 (770)
Q Consensus 699 ~~L~-~L~l~~~~~~~~l-p~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l 753 (770)
++|+ .|++.+ .+..+ +..|.++++|+.|++++|.++.++. .+.++++|+.++.
T Consensus 273 ~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 273 GRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 8898 898887 34455 4678888999999998888887776 5677888888753
No 161
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=1.4e-08 Score=106.88 Aligned_cols=150 Identities=15% Similarity=0.282 Sum_probs=94.4
Q ss_pred CCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC-CCc-eEEEEecchhhccCCCHHHHHHH
Q 041067 161 KNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD-FEG-SCFLENVREESQRSGGLSCLQQK 238 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~-~~~~~~~~~~~~~~~~~~~l~~~ 238 (770)
...++|++..++.+..++..+. .+.+.|+|++|+||||+|+.+++.+... +.. .+++. .. ... +...+ ++
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~~---~~~-~~~~i-~~ 91 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN-AS---DDR-GIDVV-RN 91 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC-TT---SCC-SHHHH-HT
T ss_pred HHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec-Cc---ccc-ChHHH-HH
Confidence 4569999999999999986543 2338999999999999999999986432 222 22222 11 111 22222 12
Q ss_pred HHHHHhcCCCCcchHHHHHHHH-CCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEcCchhh-hhh-cCcceEE
Q 041067 239 LLSNLLKHKNVMPFIDLIFRRL-SRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITTRNKQV-LRN-WGVRKIY 313 (770)
Q Consensus 239 ll~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~v-~~~-~~~~~~~ 313 (770)
++..+..... .+ .+++.++|+||++.. ..++.+...+....+++++|+||+...- ... ......+
T Consensus 92 ~~~~~~~~~~----------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i 161 (323)
T 1sxj_B 92 QIKHFAQKKL----------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAIL 161 (323)
T ss_dssp HHHHHHHBCC----------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HHHHHHhccc----------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEE
Confidence 2222110000 01 346889999999763 3455565555555677888888876532 111 1234589
Q ss_pred EeCccChHHHHHHHH
Q 041067 314 EMKALEYHHAIELFI 328 (770)
Q Consensus 314 ~l~~L~~~ea~~Lf~ 328 (770)
++.+++.++..+++.
T Consensus 162 ~~~~~~~~~~~~~l~ 176 (323)
T 1sxj_B 162 RYSKLSDEDVLKRLL 176 (323)
T ss_dssp ECCCCCHHHHHHHHH
T ss_pred eecCCCHHHHHHHHH
Confidence 999999999999886
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.74 E-value=2.1e-08 Score=106.96 Aligned_cols=100 Identities=19% Similarity=0.175 Sum_probs=73.1
Q ss_pred EEEecCCCCCCccCCccc--cCccEEeccC-cCccccCc-ccccCCCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecC
Q 041067 634 KLNLSGCSKLKRLPEISS--GNISWLFLRE-TAIEELPS-SIERLHRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGC 709 (770)
Q Consensus 634 ~L~L~~~~~l~~lp~~~~--~~L~~L~l~~-~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~ 709 (770)
.++.+++..+..+|. +. .+|++|+|++ |.+..+|. .+..+++|+.|+|++|...+..|..+.++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 456766545777887 44 6788888885 88887774 5788888888888888765555666788888888888886
Q ss_pred CCCcccCc-ccCCCCCCcEEEccCCCCc
Q 041067 710 SNLQRLPE-CLAQFSSPIILNLAKTNIE 736 (770)
Q Consensus 710 ~~~~~lp~-~l~~l~~L~~L~L~~~~l~ 736 (770)
... .+|. .+..++ |+.|+|.+|++.
T Consensus 91 ~l~-~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALE-SLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence 654 4444 444444 888888888876
No 163
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.74 E-value=7.5e-10 Score=118.95 Aligned_cols=158 Identities=17% Similarity=0.046 Sum_probs=96.4
Q ss_pred CcCCcEEccCcCcCccccCC-CCC-CC-CCccceeEEeccCCCCCcccCccC-CCCCCCcEEEecCCCCCCc----cCCc
Q 041067 578 YRKLNQIIPAACNKLIAKTP-NPM-LM-PRLNKLVLLNLRGSKSLKRLPSRI-FNLEFLTKLNLSGCSKLKR----LPEI 649 (770)
Q Consensus 578 l~~L~~L~L~~~~~l~~~~p-~~~-~~-~~L~~L~~L~L~~~~~l~~lp~~i-~~l~~L~~L~L~~~~~l~~----lp~~ 649 (770)
+++|+.|++++|..- .... .+. .+ .+..+|++|+|++|.....-...+ ..+++|++|+|++|..... +...
T Consensus 71 ~~~L~~L~Ls~n~l~-~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMT-PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCC-HHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCC-HHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 467888888887521 1000 000 01 123678888888887433222222 2456788888888863221 1111
Q ss_pred c---ccCccEEeccCcCccc-----cCcccccCCCCCEEeccCCCCCC----CCCcccCCCCCCcEEEeecCCCCc----
Q 041067 650 S---SGNISWLFLRETAIEE-----LPSSIERLHRLGYLDLLDCKRLK----SLPRSLWMLKSLGVLNLSGCSNLQ---- 713 (770)
Q Consensus 650 ~---~~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~l~~~~~~~---- 713 (770)
. ..+|++|++++|.+.. ++..+..+++|++|+|++|.... .++..+..+++|++|+|++|....
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 1 1468888888887763 55556677788888888877432 234556667788888888876543
Q ss_pred ccCcccCCCCCCcEEEccCCCCc
Q 041067 714 RLPECLAQFSSPIILNLAKTNIE 736 (770)
Q Consensus 714 ~lp~~l~~l~~L~~L~L~~~~l~ 736 (770)
.++..+...++|+.|+|++|.++
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHhCCCCCEEeccCCCCC
Confidence 24444556677888888888876
No 164
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.67 E-value=1.5e-07 Score=99.23 Aligned_cols=151 Identities=19% Similarity=0.255 Sum_probs=93.5
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC-Cc-eEEEEecchhhccCCCHHHHHH
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDF-EG-SCFLENVREESQRSGGLSCLQQ 237 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~~l~~ 237 (770)
.-.+++|++..++.+..++..+ ....+.++|++|+||||+|+.+++.+.... .. ...+. ..+.. +...+..
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~-~~~~~----~~~~~~~ 95 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN-ASDER----GINVIRE 95 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE-TTCHH----HHHTTHH
T ss_pred CHHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee-ccccC----chHHHHH
Confidence 3456999999999999998654 333489999999999999999999864322 11 12222 11110 1111111
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEcCchhhh-hh-cCcceEE
Q 041067 238 KLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITTRNKQVL-RN-WGVRKIY 313 (770)
Q Consensus 238 ~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~v~-~~-~~~~~~~ 313 (770)
. +........ ...+++.++|+||++.. +..+.+...+.....++++|+||....-. .. ......+
T Consensus 96 ~-~~~~~~~~~----------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~ 164 (327)
T 1iqp_A 96 K-VKEFARTKP----------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF 164 (327)
T ss_dssp H-HHHHHHSCC----------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEE
T ss_pred H-HHHHHhhCC----------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEE
Confidence 1 111100000 01256789999999764 45666766666556788899888765321 11 1123478
Q ss_pred EeCccChHHHHHHHH
Q 041067 314 EMKALEYHHAIELFI 328 (770)
Q Consensus 314 ~l~~L~~~ea~~Lf~ 328 (770)
.+.+++.++..+++.
T Consensus 165 ~~~~l~~~~~~~~l~ 179 (327)
T 1iqp_A 165 RFRPLRDEDIAKRLR 179 (327)
T ss_dssp ECCCCCHHHHHHHHH
T ss_pred EecCCCHHHHHHHHH
Confidence 999999999988875
No 165
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.65 E-value=8.8e-08 Score=101.21 Aligned_cols=242 Identities=14% Similarity=0.132 Sum_probs=143.8
Q ss_pred CCCCceEEEecCCCCCCccCCccCCCCCCCCceeEEEEcCCCCC--CCCCCCCcccccccccCCCCcccccc-cccc---
Q 041067 504 MPKLRFLKFYSSSFNGENKCKISYLQDPGFGEVKYLHWYGYPLK--SLPSNLSAEKLMLLEVPDSDIEQLWD-CVKH--- 577 (770)
Q Consensus 504 l~~Lr~L~l~~~~l~~~~p~~l~~l~~~~l~~Lr~L~l~~~~l~--~lp~~~~~~~L~~L~l~~~~i~~l~~-~~~~--- 577 (770)
+.+|+.|.+.++--.. .+..+.. .+.+|+.|++++|.+. ..+...- ..+..+.+..+ .++. .+..
T Consensus 24 ~~~l~~L~l~g~i~~~----~~~~l~~-~l~~L~~LdLs~n~i~~~~~~~~~~-~~~~~~~~~~~---~I~~~aF~~~~~ 94 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAE----DFRHLRD-EFPSLKVLDISNAEIKMYSGKAGTY-PNGKFYIYMAN---FVPAYAFSNVVN 94 (329)
T ss_dssp HHHCSEEEEEEEECHH----HHHHHHH-SCTTCCEEEEEEEEECCEEESSSSS-GGGCCEEECTT---EECTTTTEEEET
T ss_pred hCceeEEEEeccccHH----HHHHHHH-hhccCeEEecCcceeEEecCccccc-ccccccccccc---ccCHHHhccccc
Confidence 4467777777541111 1111110 0357899999988877 2222111 11333344444 2332 2345
Q ss_pred -----CcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccC-ccCCCCCCCcEEEecCCC---CCCccCC
Q 041067 578 -----YRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLP-SRIFNLEFLTKLNLSGCS---KLKRLPE 648 (770)
Q Consensus 578 -----l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~---~l~~lp~ 648 (770)
+++|+.++|.. .+ ..+++ ..+.++++|+.|++.+|... .++ ..+..+.++.++...... ....+..
T Consensus 95 ~~~~g~~~L~~l~L~~--~i-~~I~~-~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~ 169 (329)
T 3sb4_A 95 GVTKGKQTLEKVILSE--KI-KNIED-AAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEH 169 (329)
T ss_dssp TEEEECTTCCC-CBCT--TC-CEECT-TTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTT
T ss_pred ccccccCCCcEEECCc--cc-cchhH-HHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccc
Confidence 88999999887 33 44543 45778889999999988743 444 345455555555443310 0111111
Q ss_pred ccc-----------------------------cCccEEeccCcCccccCccc-ccCCCCCEEeccCCCCCCCCCc-ccCC
Q 041067 649 ISS-----------------------------GNISWLFLRETAIEELPSSI-ERLHRLGYLDLLDCKRLKSLPR-SLWM 697 (770)
Q Consensus 649 ~~~-----------------------------~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L~L~~~~~~~~lp~-~l~~ 697 (770)
... .++..+.+.++-...-...+ ..+++|+.|++++|. ...+|. .+.+
T Consensus 170 ~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~ 248 (329)
T 3sb4_A 170 FAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQ 248 (329)
T ss_dssp SCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTT
T ss_pred cccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhC
Confidence 100 12222322222111000011 137899999999877 456665 5889
Q ss_pred CCCCcEEEeecCCCCcccCc-ccCCCCCCc-EEEccCCCCcccc-hhhhCCCCCcEEecccCccCCcCCC
Q 041067 698 LKSLGVLNLSGCSNLQRLPE-CLAQFSSPI-ILNLAKTNIERIP-KSISQLLMLRYLLLSYSESLQSSPK 764 (770)
Q Consensus 698 l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~-~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~c~~L~~lP~ 764 (770)
+++|+.|++.++ +..++. .|.++++|+ .+.+.+ .++.++ .++.+|++|+.|+++++. ++.++.
T Consensus 249 ~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~ 314 (329)
T 3sb4_A 249 KKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGD 314 (329)
T ss_dssp CTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSC-CCEECT
T ss_pred CCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCc-cCccch
Confidence 999999999985 566654 789999999 999998 788776 578899999999998875 777764
No 166
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.60 E-value=1e-07 Score=91.66 Aligned_cols=150 Identities=11% Similarity=0.097 Sum_probs=84.7
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC-C-----CceEEEEecchhhccCCCHH
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD-F-----EGSCFLENVREESQRSGGLS 233 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-----~~~~~~~~~~~~~~~~~~~~ 233 (770)
.-..++||++.++++.+.+... ..+.+.|+|.+|+||||+|+.+++.+... + ...++..+............
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRG 97 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHH
T ss_pred cccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccc
Confidence 3456999999999999998653 34568899999999999999999886431 1 12222222222111110110
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHH--CCCcEEEEEeCCCChH---------h-HHHHHhcccCCCCCceEEEEcCch
Q 041067 234 CLQQKLLSNLLKHKNVMPFIDLIFRRL--SRMKVLIVFDDVTCLS---------Q-LQSLIGSLYWLTPVSRIIITTRNK 301 (770)
Q Consensus 234 ~l~~~ll~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~~~~---------~-~~~l~~~~~~~~~gs~IivTTR~~ 301 (770)
... .....+.+.+ .+++.+||+||++... . ...+..... ..+..+|.||...
T Consensus 98 ~~~--------------~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~~ 161 (195)
T 1jbk_A 98 EFE--------------ERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLD 161 (195)
T ss_dssp HHH--------------HHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECHH
T ss_pred cHH--------------HHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCCHH
Confidence 000 0111111111 3567899999997642 1 222222221 2345677777665
Q ss_pred hhhhh-------cCcceEEEeCccChHHHHHHH
Q 041067 302 QVLRN-------WGVRKIYEMKALEYHHAIELF 327 (770)
Q Consensus 302 ~v~~~-------~~~~~~~~l~~L~~~ea~~Lf 327 (770)
..... ......+.+.+++.++..+++
T Consensus 162 ~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 162 EYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 42211 122236889999998877653
No 167
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.58 E-value=1.7e-06 Score=93.61 Aligned_cols=206 Identities=9% Similarity=0.123 Sum_probs=95.2
Q ss_pred ceeEEEEcCCCCCCCCC-CC-CcccccccccCCCCccccccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEe
Q 041067 535 EVKYLHWYGYPLKSLPS-NL-SAEKLMLLEVPDSDIEQLWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLN 612 (770)
Q Consensus 535 ~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~ 612 (770)
+|+.+.+.+ .++.++. .| .+.+|+.++++.+++..++.......+|+.+.+... + ..++. ..+.++.+|+.++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l-~~I~~-~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--L-KEIGS-QAFLKTSQLKTIE 232 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--C-CEECT-TTTTTCTTCCCEE
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--h-heehh-hHhhCCCCCCEEe
Confidence 355555443 3444442 22 235566666666666655555444455666555432 2 22322 2345555566666
Q ss_pred ccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCCccc---cCccEEeccCcCcc-----ccCc-ccccCCCCCEEecc
Q 041067 613 LRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPEISS---GNISWLFLRETAIE-----ELPS-SIERLHRLGYLDLL 683 (770)
Q Consensus 613 L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~---~~L~~L~l~~~~i~-----~lp~-~i~~l~~L~~L~L~ 683 (770)
+..+ +..++.....-.+|+.+.+.+ .++.++.... .+|+.+.+.++.+. .++. .+..+++|+.+.+.
T Consensus 233 l~~~--l~~I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 233 IPEN--VSTIGQEAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp CCTT--CCEECTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred cCCC--ccCccccccccCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 5542 344443322224566666533 2444443322 45555555544433 2322 34555555555555
Q ss_pred CCCCCCCCCc-ccCCCCCCcEEEeecCCCCccc-CcccCCCCCCcEEEccCCCCcccch-hhhCCC-CCcEEecc
Q 041067 684 DCKRLKSLPR-SLWMLKSLGVLNLSGCSNLQRL-PECLAQFSSPIILNLAKTNIERIPK-SISQLL-MLRYLLLS 754 (770)
Q Consensus 684 ~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~l-p~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~-~L~~L~l~ 754 (770)
++ ...++. .+.++++|+.+.|..+ +..+ +..|.++ +|+.+.+.+|.+..++. .+..++ +++.|.+-
T Consensus 309 ~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 309 ES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp TT--CCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred Cc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeC
Confidence 31 233332 3445555665555432 2233 2345555 56666665555443332 223332 44444443
No 168
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.56 E-value=3.1e-08 Score=105.48 Aligned_cols=61 Identities=8% Similarity=0.214 Sum_probs=34.3
Q ss_pred CCCCCcEEEeecCCCCcccCccc---CCCCCCcEEEccCCCCcc-----cchhhhCCCCCcEEecccCc
Q 041067 697 MLKSLGVLNLSGCSNLQRLPECL---AQFSSPIILNLAKTNIER-----IPKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 697 ~l~~L~~L~l~~~~~~~~lp~~l---~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~l~~c~ 757 (770)
.+++|++|++++|......+..+ ..+++|+.|+|+.|.++. ++..+..+++|+.|++++|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 35666666666655443222211 245666666666666652 44444556666666666664
No 169
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.54 E-value=2.2e-09 Score=115.35 Aligned_cols=156 Identities=18% Similarity=0.115 Sum_probs=91.8
Q ss_pred cCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccC-----CCCCCCcEEEecCCCCCC----ccCCc
Q 041067 579 RKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRI-----FNLEFLTKLNLSGCSKLK----RLPEI 649 (770)
Q Consensus 579 ~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i-----~~l~~L~~L~L~~~~~l~----~lp~~ 649 (770)
++|+.|+|++|..- .... ......+++|++|+|++|.....-...+ ...++|++|+|++|.... .++..
T Consensus 101 ~~L~~L~Ls~n~l~-~~~~-~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 178 (372)
T 3un9_A 101 HALDEVNLASCQLD-PAGL-RTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG 178 (372)
T ss_dssp SCEEEEECTTCCCC-HHHH-HHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCceEEEecCCCCC-HHHH-HHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence 56777777765421 1000 0012234677888888876432221111 235678888888886311 12222
Q ss_pred cc--cCccEEeccCcCcc-----ccCcccccCCCCCEEeccCCCCCC----CCCcccCCCCCCcEEEeecCCCCcccCcc
Q 041067 650 SS--GNISWLFLRETAIE-----ELPSSIERLHRLGYLDLLDCKRLK----SLPRSLWMLKSLGVLNLSGCSNLQRLPEC 718 (770)
Q Consensus 650 ~~--~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~l~~~~~~~~lp~~ 718 (770)
.. ++|++|+|++|.+. .++..+..+++|++|+|++|.... .++..+..+++|++|+|++|.....-...
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 258 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQV 258 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHH
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHH
Confidence 12 57888888888877 356677888999999999998643 34455667899999999998765433333
Q ss_pred cCC---CC--CCcEEE--ccCCCCc
Q 041067 719 LAQ---FS--SPIILN--LAKTNIE 736 (770)
Q Consensus 719 l~~---l~--~L~~L~--L~~~~l~ 736 (770)
+.. .. .|+.+. +.++.+.
T Consensus 259 L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 259 LRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHCC------CEEECCCC----CH
T ss_pred HHHHhcCCCccchhhHhhhcCCccC
Confidence 322 22 266776 6666654
No 170
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.51 E-value=2.7e-07 Score=98.20 Aligned_cols=101 Identities=23% Similarity=0.135 Sum_probs=80.2
Q ss_pred EEeccCCCCCcccCccCCCCCCCcEEEecCCCCCCccCC-ccc--cCccEEeccCcCccccCc-ccccCCCCCEEeccCC
Q 041067 610 LLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSKLKRLPE-ISS--GNISWLFLRETAIEELPS-SIERLHRLGYLDLLDC 685 (770)
Q Consensus 610 ~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~~~--~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~ 685 (770)
.+++++++.+..+|. +..+++|++|+|+++..++.+|. .+. .+|++|+|++|.+..+|+ .+..+++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 467777745888999 99999999999997444777774 333 899999999999998776 5799999999999998
Q ss_pred CCCCCCCcccCCCCCCcEEEeecCCCC
Q 041067 686 KRLKSLPRSLWMLKSLGVLNLSGCSNL 712 (770)
Q Consensus 686 ~~~~~lp~~l~~l~~L~~L~l~~~~~~ 712 (770)
.. ..+|..+....+|+.|+|.+|...
T Consensus 91 ~l-~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 AL-ESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CC-SCCCSTTTCSCCCCEEECCSSCCC
T ss_pred cc-ceeCHHHcccCCceEEEeeCCCcc
Confidence 85 456655444444999999987654
No 171
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.48 E-value=1.6e-06 Score=93.11 Aligned_cols=158 Identities=14% Similarity=0.134 Sum_probs=93.2
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHH
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKL 239 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 239 (770)
.-..++|++..++.+...+..+. ....+.|+|.+|+||||+|+.+++.+........ ... . .... ...+
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~------~~~--~-~~~~-~~~~ 82 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPC--G-VCDN-CREI 82 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS------SCC--S-SSHH-HHHH
T ss_pred chhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC------CCC--c-ccHH-HHHH
Confidence 34569999999999999986432 2346889999999999999999988643221000 000 0 0000 0000
Q ss_pred HHH-------HhcCC-CCcchHHHHHHHH-----CCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEcCchh-h
Q 041067 240 LSN-------LLKHK-NVMPFIDLIFRRL-----SRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITTRNKQ-V 303 (770)
Q Consensus 240 l~~-------~~~~~-~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~-v 303 (770)
... +.... ...+....+.+.+ .+++.++|+||++.. ...+.+...+.....+..+|++|.... +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 000 00000 0011222333332 246789999999753 456667666655566777777776443 2
Q ss_pred hhh-cCcceEEEeCccChHHHHHHHH
Q 041067 304 LRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 304 ~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
... ......+++.+++.++..+++.
T Consensus 163 ~~~l~sr~~~i~~~~l~~~~~~~~l~ 188 (373)
T 1jr3_A 163 PVTILSRCLQFHLKALDVEQIRHQLE 188 (373)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHH
T ss_pred cHHHHhheeEeeCCCCCHHHHHHHHH
Confidence 111 2234789999999999988875
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.47 E-value=3.3e-06 Score=88.79 Aligned_cols=143 Identities=15% Similarity=0.145 Sum_probs=84.3
Q ss_pred CCCCcccchHHHHHHHHhhcC---CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHH
Q 041067 160 NKNKLVGVESKVEEIESILGV---ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQ 236 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 236 (770)
.-+.++|++..++.+...+.. .......|.|+|.+|+||||+|+.+++.....| .++. .... . ....+.
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-~~~~---~-~~~~l~ 81 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-GPAI---E-KPGDLA 81 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-TTTC---C-SHHHHH
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-cccc---C-ChHHHH
Confidence 456799999999999888752 112345688999999999999999998764322 2222 1111 1 111111
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH--hHHHHHhcccCC------------------CCCceEEE
Q 041067 237 QKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS--QLQSLIGSLYWL------------------TPVSRIII 296 (770)
Q Consensus 237 ~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~------------------~~gs~Iiv 296 (770)
. .+.. . ..++.+|++|+++... ..+.+...+... .++.++|.
T Consensus 82 ~----~l~~-------------~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 82 A----ILAN-------------S-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp H----HHTT-------------T-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred H----HHHH-------------h-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 1 1110 0 1356789999998743 334443332211 02345666
Q ss_pred EcCchh-hhhhc--CcceEEEeCccChHHHHHHHH
Q 041067 297 TTRNKQ-VLRNW--GVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 297 TTR~~~-v~~~~--~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
||.... +...+ .....+.+.+++.++..+++.
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~ 178 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVM 178 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHH
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHH
Confidence 665432 21111 123589999999999888875
No 173
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.46 E-value=3e-06 Score=87.28 Aligned_cols=151 Identities=18% Similarity=0.237 Sum_probs=90.0
Q ss_pred CCCCCCcccchHHHHHHHHhhcCC-----------CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhh
Q 041067 158 RDNKNKLVGVESKVEEIESILGVE-----------SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREES 226 (770)
Q Consensus 158 ~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~ 226 (770)
...-+.++|.++.++++.+.+... ....+.+.|+|.+|+||||+|+.+++..... +...+..+..
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~----~~~v~~~~~~ 88 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT----FIRVVGSELV 88 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE----EEEEEGGGGC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC----EEEEehHHHH
Confidence 344567999999999998877431 1334568999999999999999999886432 2222222221
Q ss_pred ccCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh-------------H---hHHHHHhcccC--
Q 041067 227 QRSGG-LSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL-------------S---QLQSLIGSLYW-- 287 (770)
Q Consensus 227 ~~~~~-~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~---~~~~l~~~~~~-- 287 (770)
....+ ...... ..+.......+.+|+||+++.. . .+..++.....
T Consensus 89 ~~~~~~~~~~~~----------------~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 89 KKFIGEGASLVK----------------DIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp CCSTTHHHHHHH----------------HHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred HhccchHHHHHH----------------HHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 11101 011111 1112222346689999999653 1 12333333221
Q ss_pred CCCCceEEEEcCchhhhh-----hcCcceEEEeCccChHHHHHHHH
Q 041067 288 LTPVSRIIITTRNKQVLR-----NWGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 288 ~~~gs~IivTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
...+..||.||...+... .......+.++..+.++..+++.
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~ 198 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILK 198 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHH
Confidence 234567788887554322 11334589999999999999986
No 174
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.46 E-value=1.3e-06 Score=91.52 Aligned_cols=149 Identities=13% Similarity=0.216 Sum_probs=92.8
Q ss_pred CCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhC-CCCce-EEEEecchhhccCCCHHHHHHH
Q 041067 161 KNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISG-DFEGS-CFLENVREESQRSGGLSCLQQK 238 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~-~~~~~~~~~~~~~~~~~~l~~~ 238 (770)
-.+++|++..++.+.+++..+ ....+.++|.+|+||||+|+.+++.+.. .+... +.+. ........ .+......
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~ 91 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-ASDERGID-VVRHKIKE 91 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE-TTSTTCTT-TSSHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe-CccccChH-HHHHHHHH
Confidence 456999999999999998653 3334899999999999999999998632 22211 2222 21111111 11111111
Q ss_pred HHHHHhcCCCCcchHHHHHHHH-CCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEcCchh-hhhh-cCcceEE
Q 041067 239 LLSNLLKHKNVMPFIDLIFRRL-SRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITTRNKQ-VLRN-WGVRKIY 313 (770)
Q Consensus 239 ll~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~-v~~~-~~~~~~~ 313 (770)
+... . .+ .+++.++|+|+++.. +..+.+...+....++.++|+||.... +... ......+
T Consensus 92 ~~~~----~-----------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i 156 (319)
T 2chq_A 92 FART----A-----------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (319)
T ss_dssp HHHS----C-----------CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEE
T ss_pred HHhc----C-----------CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEE
Confidence 1100 0 01 256789999999764 345666666665567788888876653 2111 1224589
Q ss_pred EeCccChHHHHHHHH
Q 041067 314 EMKALEYHHAIELFI 328 (770)
Q Consensus 314 ~l~~L~~~ea~~Lf~ 328 (770)
.+.+++.++..+++.
T Consensus 157 ~~~~~~~~~~~~~l~ 171 (319)
T 2chq_A 157 RFKPVPKEAMKKRLL 171 (319)
T ss_dssp ECCCCCHHHHHHHHH
T ss_pred EecCCCHHHHHHHHH
Confidence 999999999988875
No 175
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.45 E-value=3.5e-06 Score=91.22 Aligned_cols=213 Identities=12% Similarity=0.093 Sum_probs=153.0
Q ss_pred ceeEEEEcCCCCCCCCC-CCCcccccccccCCCCcccccc-ccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEe
Q 041067 535 EVKYLHWYGYPLKSLPS-NLSAEKLMLLEVPDSDIEQLWD-CVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLN 612 (770)
Q Consensus 535 ~Lr~L~l~~~~l~~lp~-~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~ 612 (770)
+|+.+.+..+ ++.++. .|...+|+.+.++. .++.+.. .+..+.+|+.+++.++. + ..++.- .+. ..+|+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l-~~I~~~-aF~-~~~L~~l~ 209 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-I-TKLPAS-TFV-YAGIEEVL 209 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-C-SEECTT-TTT-TCCCSEEE
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-c-eEechh-hEe-ecccCEEE
Confidence 5777777654 666664 44456799999986 6776654 47788999999998643 3 445542 233 47889999
Q ss_pred ccCCCCCcccCc-cCCCCCCCcEEEecCCCCCCccCCccc--cCccEEeccCcCccccCc-ccccCCCCCEEeccCCCCC
Q 041067 613 LRGSKSLKRLPS-RIFNLEFLTKLNLSGCSKLKRLPEISS--GNISWLFLRETAIEELPS-SIERLHRLGYLDLLDCKRL 688 (770)
Q Consensus 613 L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~ 688 (770)
|..+ +..++. .+.++++|+.+++..+ ++.++.... .+|+.+.+. +.+..++. .+..+++|+.+.+.++...
T Consensus 210 lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 210 LPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp CCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred eCCc--hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCcccc
Confidence 8743 566654 4667889999999863 666766544 789999884 55677754 5788999999999876532
Q ss_pred ----CCCC-cccCCCCCCcEEEeecCCCCcccC-cccCCCCCCcEEEccCCCCcccch-hhhCCCCCcEEecccCccCCc
Q 041067 689 ----KSLP-RSLWMLKSLGVLNLSGCSNLQRLP-ECLAQFSSPIILNLAKTNIERIPK-SISQLLMLRYLLLSYSESLQS 761 (770)
Q Consensus 689 ----~~lp-~~l~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~c~~L~~ 761 (770)
..++ ..+.++++|+.+.+.+ + +..++ ..|.++++|+.+.|..+ ++.+.. ++.++ +|+.+.+.+|. +..
T Consensus 285 ~~~~~~I~~~aF~~c~~L~~l~l~~-~-i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~-~~~ 359 (401)
T 4fdw_A 285 DDPEAMIHPYCLEGCPKLARFEIPE-S-IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT-PPQ 359 (401)
T ss_dssp CCTTCEECTTTTTTCTTCCEECCCT-T-CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS-CCB
T ss_pred CCcccEECHHHhhCCccCCeEEeCC-c-eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC-Ccc
Confidence 1243 4588899999999985 3 55554 47889999999999654 776654 57788 99999999985 444
Q ss_pred CC
Q 041067 762 SP 763 (770)
Q Consensus 762 lP 763 (770)
++
T Consensus 360 l~ 361 (401)
T 4fdw_A 360 VF 361 (401)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 176
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.32 E-value=1.2e-07 Score=100.98 Aligned_cols=165 Identities=16% Similarity=0.149 Sum_probs=94.5
Q ss_pred cccccccCcCCcEEccCcCcCccccCCCCCCCCCccceeEEeccCCCCCcccCccCC--CCCCCcEEEecCCCCCCccCC
Q 041067 571 LWDCVKHYRKLNQIIPAACNKLIAKTPNPMLMPRLNKLVLLNLRGSKSLKRLPSRIF--NLEFLTKLNLSGCSKLKRLPE 648 (770)
Q Consensus 571 l~~~~~~l~~L~~L~L~~~~~l~~~~p~~~~~~~L~~L~~L~L~~~~~l~~lp~~i~--~l~~L~~L~L~~~~~l~~lp~ 648 (770)
+...+..+|+|+.|.++++..+ .++. + .+++|++|+|..|.........+. .+++|++|+|+.+.... ..
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l--~l~~---~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~-~~- 235 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL--SIGK---K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDY-GF- 235 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC--BCCS---C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGG-TC-
T ss_pred HHHHHhcCCCCcEEEEeCCCCc--eecc---c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccc-cc-
Confidence 4445567788888888876433 2332 2 267788888887763332222232 67888888876432100 00
Q ss_pred ccccCccEEeccCcCccccCccc--ccCCCCCEEeccCCCCCCCCCccc---CCCCCCcEEEeecCCCCc----ccCccc
Q 041067 649 ISSGNISWLFLRETAIEELPSSI--ERLHRLGYLDLLDCKRLKSLPRSL---WMLKSLGVLNLSGCSNLQ----RLPECL 719 (770)
Q Consensus 649 ~~~~~L~~L~l~~~~i~~lp~~i--~~l~~L~~L~L~~~~~~~~lp~~l---~~l~~L~~L~l~~~~~~~----~lp~~l 719 (770)
...+..+...+ ..+++|++|++.+|......+..+ ..+++|++|+|+.|.... .++..+
T Consensus 236 ------------~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L 303 (362)
T 2ra8_A 236 ------------DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV 303 (362)
T ss_dssp ------------CSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTH
T ss_pred ------------chhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhc
Confidence 00111111112 356888888888877543222222 357889999998765443 245555
Q ss_pred CCCCCCcEEEccCCCCc-ccchhhhC-CCCCcEEecccCc
Q 041067 720 AQFSSPIILNLAKTNIE-RIPKSISQ-LLMLRYLLLSYSE 757 (770)
Q Consensus 720 ~~l~~L~~L~L~~~~l~-~lp~~l~~-l~~L~~L~l~~c~ 757 (770)
.++++|+.|++++|.++ ..-..+.. + ...+++++++
T Consensus 304 ~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 304 DKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 67788999999988877 22222332 2 3456777664
No 177
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.30 E-value=1.5e-05 Score=81.34 Aligned_cols=168 Identities=15% Similarity=0.049 Sum_probs=89.1
Q ss_pred CCcccchHHHHHHHH-------hhcC-CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHH
Q 041067 162 NKLVGVESKVEEIES-------ILGV-ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLS 233 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~-------~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 233 (770)
..++|.+..++++.. .+.. .....+.+.|+|.+|+|||++|+.+++..... . +.+. ..+..... ...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~--~-~~i~-~~~~~~g~-~~~ 107 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP--F-IKIC-SPDKMIGF-SET 107 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCS--E-EEEE-CGGGCTTC-CHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC--E-EEEe-CHHHhcCC-chH
Confidence 457788777666655 2221 23457789999999999999999999975332 1 1222 11110000 000
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh-----------H-hHHHHHhcccC---CCCCceEEEEc
Q 041067 234 CLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL-----------S-QLQSLIGSLYW---LTPVSRIIITT 298 (770)
Q Consensus 234 ~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-----------~-~~~~l~~~~~~---~~~gs~IivTT 298 (770)
..... ....+......+..+|++|+++.. . ..+.+...+.. .+....||.||
T Consensus 108 ~~~~~-------------~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~tt 174 (272)
T 1d2n_A 108 AKCQA-------------MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTT 174 (272)
T ss_dssp HHHHH-------------HHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEE
T ss_pred HHHHH-------------HHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEec
Confidence 00000 111222233456789999998653 1 12333333322 23344577788
Q ss_pred Cchhhhhh---cC-cceEEEeCccCh-HHHHHHHHHhccCCCchhHHHHhhHhcC
Q 041067 299 RNKQVLRN---WG-VRKIYEMKALEY-HHAIELFIMKYAQGVPLALKVLGCFLYE 348 (770)
Q Consensus 299 R~~~v~~~---~~-~~~~~~l~~L~~-~ea~~Lf~~~~~~glPLal~~~g~~L~~ 348 (770)
...+.... .+ ....+.+++++. ++..+++. ....--|-++..++....+
T Consensus 175 n~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~-~~~~~~~~~~~~l~~~~~g 228 (272)
T 1d2n_A 175 SRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALE-LLGNFKDKERTTIAQQVKG 228 (272)
T ss_dssp SCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHH-HHTCSCHHHHHHHHHHHTT
T ss_pred CChhhcchhhhhcccceEEcCCCccHHHHHHHHHH-hcCCCCHHHHHHHHHHhcC
Confidence 77755433 12 246789999988 55444443 2222234455555555444
No 178
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.28 E-value=3e-06 Score=84.71 Aligned_cols=141 Identities=13% Similarity=0.201 Sum_probs=81.6
Q ss_pred CCCCcccc---hHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHH
Q 041067 160 NKNKLVGV---ESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQ 236 (770)
Q Consensus 160 ~~~~~vGr---~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 236 (770)
.-++++|. +..++.+..+...+ ..+.+.|+|.+|+||||+|+.+++..........|+. ..+..... .
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~~---~--- 96 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHASIS---T--- 96 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGSC---G---
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHHH---H---
Confidence 34567763 35566666666432 3467899999999999999999998765544455554 22221110 0
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChHh----HHHHHhcccCC-CCCc-eEEEEcCchh--------
Q 041067 237 QKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLSQ----LQSLIGSLYWL-TPVS-RIIITTRNKQ-------- 302 (770)
Q Consensus 237 ~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~----~~~l~~~~~~~-~~gs-~IivTTR~~~-------- 302 (770)
... +.+ .++.+||+||++.... .+.+...+... ..+. ++|+||+...
T Consensus 97 -----~~~-------------~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~ 157 (242)
T 3bos_A 97 -----ALL-------------EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLP 157 (242)
T ss_dssp -----GGG-------------TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCH
T ss_pred -----HHH-------------Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhh
Confidence 000 001 3456899999965421 23333322111 1222 4777776332
Q ss_pred -hhhhcCcceEEEeCccChHHHHHHHH
Q 041067 303 -VLRNWGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 303 -v~~~~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+...+.....+++++++.++..+++.
T Consensus 158 ~l~~r~~~~~~i~l~~~~~~~~~~~l~ 184 (242)
T 3bos_A 158 DLVSRMHWGLTYQLQPMMDDEKLAALQ 184 (242)
T ss_dssp HHHHHHHHSEEEECCCCCGGGHHHHHH
T ss_pred hhhhHhhcCceEEeCCCCHHHHHHHHH
Confidence 11111223789999999999999886
No 179
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.28 E-value=1.6e-05 Score=83.43 Aligned_cols=149 Identities=15% Similarity=0.167 Sum_probs=81.8
Q ss_pred CCcc-cchH--HHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHH
Q 041067 162 NKLV-GVES--KVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQK 238 (770)
Q Consensus 162 ~~~v-Gr~~--~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (770)
++|+ |... ....+......+......+.|+|++|+||||||+.+++.....-...+++. . ..+...
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~----------~~~~~~ 79 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-A----------DDFAQA 79 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-H----------HHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-H----------HHHHHH
Confidence 3454 5333 233445554433323557899999999999999999998754322234443 1 112223
Q ss_pred HHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH----hHHHHHhcccC-CCCCceEEEEcCchh---------hh
Q 041067 239 LLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS----QLQSLIGSLYW-LTPVSRIIITTRNKQ---------VL 304 (770)
Q Consensus 239 ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IivTTR~~~---------v~ 304 (770)
+...+... ....+.+.+. +.-+|++||++... ..+.+...+.. ...|.+||+||.... +.
T Consensus 80 ~~~~~~~~-----~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~ 153 (324)
T 1l8q_A 80 MVEHLKKG-----TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLV 153 (324)
T ss_dssp HHHHHHHT-----CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHH
T ss_pred HHHHHHcC-----cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhh
Confidence 33222211 1222333332 35689999996543 22333333211 234567888775431 12
Q ss_pred hhcCcceEEEeCccChHHHHHHHH
Q 041067 305 RNWGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 305 ~~~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
..+.....+++++ +.++..+++.
T Consensus 154 sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 154 SRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp HHHHTSEEEECCC-CHHHHHHHHH
T ss_pred hcccCceEEEeCC-CHHHHHHHHH
Confidence 2222336799999 9999988886
No 180
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.27 E-value=4.2e-06 Score=86.53 Aligned_cols=159 Identities=13% Similarity=0.098 Sum_probs=94.3
Q ss_pred cccchHHHHHHHHhhcC--CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC-----C--ceEEEEecchhhccCCCHHH
Q 041067 164 LVGVESKVEEIESILGV--ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDF-----E--GSCFLENVREESQRSGGLSC 234 (770)
Q Consensus 164 ~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~--~~~~~~~~~~~~~~~~~~~~ 234 (770)
+.|||+++++|...|.. .......+.|+|++|+|||++|+.+++++.... . ..+++. ..... ....
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN-c~~~~----t~~~ 96 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID-ALELA----GMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE-TTCCC------HH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe-ccccC----CHHH
Confidence 88999999999988753 234567889999999999999999999875322 1 123333 22211 3445
Q ss_pred HHHHHHHHHhcCCCCc----chHHHHHHHH---CCCcEEEEEeCCCChHhHHHHHhcccCC-CCCceE--EEEcCchhh-
Q 041067 235 LQQKLLSNLLKHKNVM----PFIDLIFRRL---SRMKVLIVFDDVTCLSQLQSLIGSLYWL-TPVSRI--IITTRNKQV- 303 (770)
Q Consensus 235 l~~~ll~~~~~~~~~~----~~~~~l~~~L---~~kr~LlVLDdv~~~~~~~~l~~~~~~~-~~gs~I--ivTTR~~~v- 303 (770)
+...+..++.+..... .....+...+ .+++++++||+++...+-+.+...+.|. ..++++ |.++...+.
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 6677777775432211 2233333332 3567999999998754323333332221 123333 333433221
Q ss_pred --------hhhcCcceEEEeCccChHHHHHHHH
Q 041067 304 --------LRNWGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 304 --------~~~~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
...++ ...+.+++++.+|-.+++.
T Consensus 177 ~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~ 208 (318)
T 3te6_A 177 REQINIMPSLKAH-FTEIKLNKVDKNELQQMII 208 (318)
T ss_dssp HHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHH
T ss_pred hhhcchhhhccCC-ceEEEeCCCCHHHHHHHHH
Confidence 11222 2578999999999998886
No 181
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.27 E-value=1.1e-05 Score=90.33 Aligned_cols=158 Identities=16% Similarity=0.174 Sum_probs=87.5
Q ss_pred CCCCcccchHHHHHHHHhhcCC---------------CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecch
Q 041067 160 NKNKLVGVESKVEEIESILGVE---------------SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVRE 224 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~---------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~ 224 (770)
.-..++|++..++++..++... ....+.+.|+|++|+||||+|+.+++... +. .+.+ +...
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~i-n~s~ 112 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQ-NASD 112 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEE-CTTS
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEE-eCCC
Confidence 3457999999999999998641 01346899999999999999999999872 21 1222 2211
Q ss_pred hhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHH--HCCCcEEEEEeCCCChH-----hHHHHHhcccCCCCCceEEEE
Q 041067 225 ESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRR--LSRMKVLIVFDDVTCLS-----QLQSLIGSLYWLTPVSRIIIT 297 (770)
Q Consensus 225 ~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~--L~~kr~LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~IivT 297 (770)
. . .. .+....+.................+. ..+++.+||+|+++... .+..+...+.. .+..||++
T Consensus 113 ~---~-~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli 185 (516)
T 1sxj_A 113 V---R-SK-TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILI 185 (516)
T ss_dssp C---C-CH-HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEE
T ss_pred c---c-hH-HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEE
Confidence 1 1 11 12222211111111000000000001 13567899999996532 13444433322 23446665
Q ss_pred cCchh---hhhhcCcceEEEeCccChHHHHHHHH
Q 041067 298 TRNKQ---VLRNWGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 298 TR~~~---v~~~~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+.+.. +.........+.+++++.++..+.+.
T Consensus 186 ~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~ 219 (516)
T 1sxj_A 186 CNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLM 219 (516)
T ss_dssp ESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHH
T ss_pred EcCCCCccchhhHhceEEEEeCCCCHHHHHHHHH
Confidence 55432 22222335689999999999888775
No 182
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.25 E-value=2.4e-05 Score=83.23 Aligned_cols=168 Identities=18% Similarity=0.165 Sum_probs=93.8
Q ss_pred hhHHHHhHhhhhhccccccccCCCCCCCcccchHHHHHHHHhhcC----------CCCCeEEEEEEecCCCcHHHHHHHH
Q 041067 136 ESEFINEVGNDILKRLDEVFRPRDNKNKLVGVESKVEEIESILGV----------ESKDVYSLGIWGIGGIGKTTIARAI 205 (770)
Q Consensus 136 e~~~i~~i~~~i~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~ 205 (770)
+...++.+...+..+. ++..-..++|.+..++++.+.+.. .....+.|.|+|.+|+|||++|+++
T Consensus 63 ~~~~~~~i~~~i~~~~-----~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 63 EPKMIELIMNEIMDHG-----PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CHHHHHHHHHHTBCCS-----CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHH
T ss_pred ChHHHHHHHhhcccCC-----CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHH
Confidence 4445555655554433 233445799999999999887742 1123567999999999999999999
Q ss_pred HHHHhCCCCceEEEEecchhhccCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh---------
Q 041067 206 FDKISGDFEGSCFLENVREESQRSGG-LSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL--------- 275 (770)
Q Consensus 206 ~~~~~~~f~~~~~~~~~~~~~~~~~~-~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--------- 275 (770)
++.... .++..+..+......+ .....+. .+...-..++.+|+||+++..
T Consensus 138 a~~~~~----~~~~i~~~~l~~~~~g~~~~~~~~----------------~~~~a~~~~~~vl~iDEid~l~~~~~~~~~ 197 (357)
T 3d8b_A 138 ASQSGA----TFFSISASSLTSKWVGEGEKMVRA----------------LFAVARCQQPAVIFIDEIDSLLSQRGDGEH 197 (357)
T ss_dssp HHHTTC----EEEEEEGGGGCCSSTTHHHHHHHH----------------HHHHHHHTCSEEEEEETHHHHTBC------
T ss_pred HHHcCC----eEEEEehHHhhccccchHHHHHHH----------------HHHHHHhcCCeEEEEeCchhhhccCCCCcc
Confidence 987532 2222223222211101 0111111 111112346789999999532
Q ss_pred ----HhHHHHHhcccC----CCCCceEEEEcCchhhh-hh--cCcceEEEeCccChHHHHHHHH
Q 041067 276 ----SQLQSLIGSLYW----LTPVSRIIITTRNKQVL-RN--WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 276 ----~~~~~l~~~~~~----~~~gs~IivTTR~~~v~-~~--~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
.....++..+.. ...+..||.||...+.. .. -.....+.+...+.++..+++.
T Consensus 198 ~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~ 261 (357)
T 3d8b_A 198 ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVI 261 (357)
T ss_dssp CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHH
Confidence 113334333321 12344555566543221 11 1334578888888888888875
No 183
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.24 E-value=3.4e-05 Score=78.16 Aligned_cols=149 Identities=17% Similarity=0.211 Sum_probs=83.4
Q ss_pred CCCcccchHHHHHHHHhhcC---C-------CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCC
Q 041067 161 KNKLVGVESKVEEIESILGV---E-------SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSG 230 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 230 (770)
-++++|.+..++++.+++.. . ....+.|.|+|.+|+|||++|+.+++.....| +.+. ..+......
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~-~~~~~~~~~ 80 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMA-GAEFVEVIG 80 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEE-TTTTSSSST
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEec-hHHHHhhcc
Confidence 35689999988888776531 1 12345688999999999999999999864322 2222 222211110
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH-----------------hHHHHHhcccCC--CCC
Q 041067 231 GLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS-----------------QLQSLIGSLYWL--TPV 291 (770)
Q Consensus 231 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-----------------~~~~l~~~~~~~--~~g 291 (770)
+.. .. .....+.......+.+|++|+++... .+..++..+... ..+
T Consensus 81 ~~~---~~------------~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 81 GLG---AA------------RVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp THH---HH------------HHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred Chh---HH------------HHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 110 00 01111222223457899999998641 123344333222 234
Q ss_pred ceEEEEcCchhhhh-h-c---CcceEEEeCccChHHHHHHHH
Q 041067 292 SRIIITTRNKQVLR-N-W---GVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 292 s~IivTTR~~~v~~-~-~---~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
..||.||....... . . .....+.++..+.++..+++.
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~ 187 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFE 187 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHH
Confidence 56666776544221 1 1 234678899999999988875
No 184
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.21 E-value=1e-05 Score=84.29 Aligned_cols=147 Identities=12% Similarity=0.072 Sum_probs=86.2
Q ss_pred CcccchHHHHHHHHhhcCC-------------CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCC--c-eEEEEecchhh
Q 041067 163 KLVGVESKVEEIESILGVE-------------SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFE--G-SCFLENVREES 226 (770)
Q Consensus 163 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~-~~~~~~~~~~~ 226 (770)
.++|.+..++.+.+.+... ......+.|+|.+|+|||++|+.+++.+..... . .+...+..+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 3789888888887665411 233457899999999999999999987643211 1 12222121111
Q ss_pred ccCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCC-----------ChHhHHHHHhcccCCCCCceE
Q 041067 227 QRSGG-LSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVT-----------CLSQLQSLIGSLYWLTPVSRI 294 (770)
Q Consensus 227 ~~~~~-~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~-----------~~~~~~~l~~~~~~~~~gs~I 294 (770)
....+ ... .....+... +.-+|++|+++ .......+...+.....+..|
T Consensus 112 ~~~~g~~~~----------------~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~ 172 (309)
T 3syl_A 112 GQYIGHTAP----------------KTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVV 172 (309)
T ss_dssp CSSTTCHHH----------------HHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEE
T ss_pred hhcccccHH----------------HHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEE
Confidence 11000 000 001111111 34589999997 334456666665555566788
Q ss_pred EEEcCchhhhhh-------c-CcceEEEeCccChHHHHHHHH
Q 041067 295 IITTRNKQVLRN-------W-GVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 295 ivTTR~~~v~~~-------~-~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
|.||........ . .....+.+++++.++..+++.
T Consensus 173 i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~ 214 (309)
T 3syl_A 173 ILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAG 214 (309)
T ss_dssp EEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHH
T ss_pred EEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHH
Confidence 888765432110 0 123789999999999988875
No 185
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.20 E-value=8.9e-06 Score=89.03 Aligned_cols=149 Identities=12% Similarity=0.183 Sum_probs=86.7
Q ss_pred Ccc-cchHHH--HHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCc--eEEEEecchhhccCCCHHHHHH
Q 041067 163 KLV-GVESKV--EEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEG--SCFLENVREESQRSGGLSCLQQ 237 (770)
Q Consensus 163 ~~v-Gr~~~~--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~~ 237 (770)
.|+ |..... ..+......... ...+.|+|.+|+||||||+.+++.+...++. .+++. ...+..
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-----------~~~~~~ 173 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLN 173 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-----------HHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHH
Confidence 454 644433 333433333222 5679999999999999999999987665432 23332 122233
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH----hHHHHHhcccC-CCCCceEEEEcCch---------hh
Q 041067 238 KLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS----QLQSLIGSLYW-LTPVSRIIITTRNK---------QV 303 (770)
Q Consensus 238 ~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IivTTR~~---------~v 303 (770)
++...+... ....+.+.+..+.-+|++||++... ..+.+...+.. ...|..||+||.+. .+
T Consensus 174 ~~~~~~~~~-----~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L 248 (440)
T 2z4s_A 174 DLVDSMKEG-----KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRL 248 (440)
T ss_dssp HHHHHHHTT-----CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHH
T ss_pred HHHHHHHcc-----cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHH
Confidence 333333221 1234445555467799999996432 23334333321 24577888888763 12
Q ss_pred hhhcCcceEEEeCccChHHHHHHHH
Q 041067 304 LRNWGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 304 ~~~~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
...+....++.+++++.++..+++.
T Consensus 249 ~sR~~~g~~i~l~~p~~e~r~~iL~ 273 (440)
T 2z4s_A 249 VSRFQMGLVAKLEPPDEETRKSIAR 273 (440)
T ss_dssp HHHHHSSBCCBCCCCCHHHHHHHHH
T ss_pred HhhccCCeEEEeCCCCHHHHHHHHH
Confidence 2222223578899999999988886
No 186
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.16 E-value=8.1e-06 Score=77.83 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=41.1
Q ss_pred CCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 161 KNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
-..++||+.+++.+.+.+... ..+.+.|+|.+|+||||+|+.+++....
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 456999999999999988643 3456789999999999999999998644
No 187
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.16 E-value=3.3e-05 Score=81.59 Aligned_cols=251 Identities=12% Similarity=0.067 Sum_probs=127.8
Q ss_pred CCCCcccchHHHHHHHHhhcCC---CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHH
Q 041067 160 NKNKLVGVESKVEEIESILGVE---SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQ 236 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 236 (770)
.-..++|++..++++..++... ......|.|+|.+|+|||++|+.+++.....| +.+. .... . ....+.
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~-~~~~---~-~~~~~~ 98 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA-APMI---E-KSGDLA 98 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-GGGC---C-SHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec-chhc---c-chhHHH
Confidence 3457999999999999888642 33455689999999999999999988754332 1221 1111 1 111111
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh--HhHHHHHhcccCCC------------------CCceEEE
Q 041067 237 QKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL--SQLQSLIGSLYWLT------------------PVSRIII 296 (770)
Q Consensus 237 ~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~------------------~gs~Iiv 296 (770)
..+.. ..+..+|+||+++.. .....+...+.... ++.++|.
T Consensus 99 -~~~~~------------------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 99 -AILTN------------------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp -HHHHT------------------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred -HHHHh------------------ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 11100 235678999999764 23344443332211 1245555
Q ss_pred EcCchhhh-hh--cCcceEEEeCccChHHHHHHHH--HhccC--CCchhHHHHhhHhcCCCHHHHHHHHHHHHh------
Q 041067 297 TTRNKQVL-RN--WGVRKIYEMKALEYHHAIELFI--MKYAQ--GVPLALKVLGCFLYEREKEVWESAIDKLQR------ 363 (770)
Q Consensus 297 TTR~~~v~-~~--~~~~~~~~l~~L~~~ea~~Lf~--~~~~~--glPLal~~~g~~L~~~~~~~w~~~l~~l~~------ 363 (770)
+|...... .. -.....+.+.+++.++..+++. +...+ --|-++..++. ....+..+-..+++....
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~-~~~G~~r~l~~~l~~~~~~a~~~~ 238 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAK-RSRSTPRIALRLLKRVRDFADVND 238 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHH-TTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH-HHCcCHHHHHHHHHHHHHHHHhhc
Confidence 55543221 11 1234789999999999988886 22111 12233444433 122233333333333210
Q ss_pred c---cchhHHHH---HHHhHhcCCHHHHHHHhhcccccCC--CChhHHHHHHHhcCCCc---hhhHH-HhhhccceeEec
Q 041067 364 I---LLASIFEV---LKISYDSLDDKEKNIFLDVACFFQG--EDVDPVMKFFNASGFYP---EIGMS-VLVDKSLIAIDS 431 (770)
Q Consensus 364 ~---~~~~i~~~---l~~sy~~L~~~~k~~fl~~a~f~~~--~~~~~l~~~~~~~g~~~---~~~~~-~L~~~sLi~~~~ 431 (770)
. ..+.+... +..+...++..++..+..++-. .+ .....+.+.+ |... ...++ .|++.++|....
T Consensus 239 ~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~l---g~~~~tl~~~l~~~l~~~gli~~~~ 314 (338)
T 3pfi_A 239 EEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAAL---SEDENTIEDVIEPYLLANGYIERTA 314 (338)
T ss_dssp CSEECHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHHT---TCCHHHHHHTTHHHHHHTTSEEEET
T ss_pred CCccCHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHHh---CCCHHHHHHHHhHHHHHcCceecCC
Confidence 0 01112222 2223334555545555544443 22 2334443332 2221 12244 788899998775
Q ss_pred CCeEEecHHHH
Q 041067 432 YNKITMHDLLQ 442 (770)
Q Consensus 432 ~~~~~mHdl~~ 442 (770)
.+++.-..-+.
T Consensus 315 ~g~~~t~~~~~ 325 (338)
T 3pfi_A 315 KGRIASAKSYS 325 (338)
T ss_dssp TEEEECHHHHH
T ss_pred CcccccHHHHH
Confidence 55554443333
No 188
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.15 E-value=6.2e-05 Score=78.84 Aligned_cols=151 Identities=15% Similarity=0.157 Sum_probs=87.0
Q ss_pred CCCCCCcccchHHHHHHHHhhc----------CCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhc
Q 041067 158 RDNKNKLVGVESKVEEIESILG----------VESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQ 227 (770)
Q Consensus 158 ~~~~~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 227 (770)
...-..++|.+..++.|.+.+. ......+.|.++|.+|+|||++|+++++.....| +..+..+...
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~~ 89 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDLVS 89 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE----EEEEHHHHHT
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE----EEEchHHHhh
Confidence 3444579999999999988772 1122245789999999999999999999864332 2221211111
Q ss_pred cC-CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH-------------hHHHHHhccc---CCCC
Q 041067 228 RS-GGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS-------------QLQSLIGSLY---WLTP 290 (770)
Q Consensus 228 ~~-~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~---~~~~ 290 (770)
.. .......+ ..+...-..++.+|++|+++... ....++..+. ....
T Consensus 90 ~~~g~~~~~~~----------------~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 90 KWMGESEKLVK----------------QLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp TTGGGHHHHHH----------------HHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred cccchHHHHHH----------------HHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 10 00111111 11111223467899999997531 1233333332 2234
Q ss_pred CceEEEEcCchhhhhh---cCcceEEEeCccChHHHHHHHH
Q 041067 291 VSRIIITTRNKQVLRN---WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 291 gs~IivTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+..||.||...+.... -.....+.++..+.++..+++.
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~ 194 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFE 194 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHH
Confidence 5566667765433211 1234678888899999888885
No 189
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.11 E-value=1.4e-05 Score=84.89 Aligned_cols=162 Identities=16% Similarity=0.224 Sum_probs=91.2
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhC--CCCceEEEEecchhhccCCCHHHHHH
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISG--DFEGSCFLENVREESQRSGGLSCLQQ 237 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~ 237 (770)
.-..++|+++.++.+..++..+. ...+.|+|.+|+||||+|+.+++.+.. .+...+.-.+... .. +...+..
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~---~~-~~~~~~~ 108 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD---ER-GISIVRE 108 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS---CC-CHHHHTT
T ss_pred CHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc---cc-chHHHHH
Confidence 34579999999999999986543 223899999999999999999987542 1222222111111 11 3332222
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEcCchh-hhhh-cCcceEE
Q 041067 238 KLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITTRNKQ-VLRN-WGVRKIY 313 (770)
Q Consensus 238 ~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~-v~~~-~~~~~~~ 313 (770)
.+ ...................-.+.+-++++|+++.. .....+...+.......++|++|.... +... ......+
T Consensus 109 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 109 KV-KNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp HH-HHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred HH-HHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceE
Confidence 11 11111100000000000011235579999998753 334556555544455677777765443 2111 1123578
Q ss_pred EeCccChHHHHHHHH
Q 041067 314 EMKALEYHHAIELFI 328 (770)
Q Consensus 314 ~l~~L~~~ea~~Lf~ 328 (770)
.+.+++.++....+.
T Consensus 188 ~~~~~~~~~~~~~l~ 202 (353)
T 1sxj_D 188 RFKALDASNAIDRLR 202 (353)
T ss_dssp ECCCCCHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHH
Confidence 999999999888876
No 190
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.07 E-value=0.00017 Score=74.63 Aligned_cols=150 Identities=12% Similarity=0.191 Sum_probs=89.3
Q ss_pred CCCCcccchHHHHHHHHhhcC-----------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhcc
Q 041067 160 NKNKLVGVESKVEEIESILGV-----------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQR 228 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 228 (770)
.-++++|.+..++++.+.+.. +-...+.|.|+|.+|+||||+|+++++.....| +.+
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v--------- 80 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISI--------- 80 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEE---------
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEE---------
Confidence 345699999999998887642 123356789999999999999999998764221 111
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH----------------hHHHHHhcccCC--CC
Q 041067 229 SGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS----------------QLQSLIGSLYWL--TP 290 (770)
Q Consensus 229 ~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~--~~ 290 (770)
+...+.. ...+.. .......+.......+.+|++|+++... ....++..+... ..
T Consensus 81 --~~~~l~~----~~~g~~-~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 81 --KGPELLT----MWFGES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp --CHHHHHH----HHHTTC-TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred --EhHHHHh----hhcCch-HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 1122222 222211 1122222333334567999999997532 123444333221 23
Q ss_pred CceEEEEcCchhhhhh--c---CcceEEEeCccChHHHHHHHH
Q 041067 291 VSRIIITTRNKQVLRN--W---GVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 291 gs~IivTTR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+..||.||...+.... . .....+.++..+.++..+++.
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~ 196 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILK 196 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHH
Confidence 4567777765533211 1 234688999999999888875
No 191
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.06 E-value=0.00013 Score=75.29 Aligned_cols=151 Identities=17% Similarity=0.147 Sum_probs=82.8
Q ss_pred CCCCCCcccchHHHHHHHHhhcCC----------CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhc
Q 041067 158 RDNKNKLVGVESKVEEIESILGVE----------SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQ 227 (770)
Q Consensus 158 ~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 227 (770)
...-..++|.+..++.+.+.+... ....+.+.|+|.+|+||||+|+.+++.....| +.+. ..+...
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~---~~i~-~~~l~~ 92 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF---LNIS-AASLTS 92 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE---EEEE-STTTSS
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEee-HHHHhh
Confidence 344567999999999998877321 11245789999999999999999998764322 1222 222111
Q ss_pred cC-CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH-------------hHHHHHhcccCC-----
Q 041067 228 RS-GGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS-------------QLQSLIGSLYWL----- 288 (770)
Q Consensus 228 ~~-~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~----- 288 (770)
.. .......+.+ +.......+.+|++|+++... ....++..+...
T Consensus 93 ~~~~~~~~~~~~~----------------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 KYVGDGEKLVRAL----------------FAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp SSCSCHHHHHHHH----------------HHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred cccchHHHHHHHH----------------HHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 11 0111111111 111223467899999996531 112233222111
Q ss_pred CCCceEEEEcCchhhhhh---cCcceEEEeCccChHHHHHHHH
Q 041067 289 TPVSRIIITTRNKQVLRN---WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 289 ~~gs~IivTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+.+..||.||...+.... -.....+.+...+.++...++.
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~ 199 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLN 199 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHH
Confidence 134456667765432111 0223567777778887777765
No 192
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.06 E-value=2.3e-06 Score=80.01 Aligned_cols=86 Identities=17% Similarity=0.232 Sum_probs=52.6
Q ss_pred CCCCEEeccCCCCCCCCCcccCCCCCCcEEEeecCCCCcc-cCcccCCC----CCCcEEEccCCC-Cc--ccchhhhCCC
Q 041067 675 HRLGYLDLLDCKRLKSLPRSLWMLKSLGVLNLSGCSNLQR-LPECLAQF----SSPIILNLAKTN-IE--RIPKSISQLL 746 (770)
Q Consensus 675 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~-lp~~l~~l----~~L~~L~L~~~~-l~--~lp~~l~~l~ 746 (770)
.+|++|++++|.....--..+..+++|++|+|++|..++. --..+..+ ++|++|+|++|. ++ .+. .+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCC
Confidence 4577777777764332223456777777777777764432 22233433 367778887775 66 232 356677
Q ss_pred CCcEEecccCccCCc
Q 041067 747 MLRYLLLSYSESLQS 761 (770)
Q Consensus 747 ~L~~L~l~~c~~L~~ 761 (770)
+|+.|++++|+.++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 888888888876653
No 193
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.04 E-value=0.00019 Score=75.03 Aligned_cols=151 Identities=15% Similarity=0.144 Sum_probs=84.7
Q ss_pred CCCCCcccchHHHHHHHHhhcC---------C-CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhcc
Q 041067 159 DNKNKLVGVESKVEEIESILGV---------E-SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQR 228 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~---------~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 228 (770)
..-++++|.++.++.|.+.+.. + ....+.|.++|++|+|||+||+++++.... ..++..+..+....
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---~~~~~i~~~~l~~~ 85 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDLVSK 85 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS---CEEEEEECCSSCCS
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC---CcEEEEEhHHHHhh
Confidence 3445789999999888876631 1 122467999999999999999999998621 11222212221111
Q ss_pred C-CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH-------------hHHHHHhcccC---CCCC
Q 041067 229 S-GGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS-------------QLQSLIGSLYW---LTPV 291 (770)
Q Consensus 229 ~-~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~---~~~g 291 (770)
. .......+.++ ...-..++.+|++|+++... ....++..+.. ...+
T Consensus 86 ~~g~~~~~~~~lf----------------~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 86 WLGESEKLVKNLF----------------QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp SCCSCHHHHHHHH----------------HHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred hhhHHHHHHHHHH----------------HHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 0 01111111111 11123567899999997641 12333333322 2234
Q ss_pred ceEEEEcCchhhhh-h--cCcceEEEeCccChHHHHHHHH
Q 041067 292 SRIIITTRNKQVLR-N--WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 292 s~IivTTR~~~v~~-~--~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
..||.||...+... . -.....+.++..+.++..+++.
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~ 189 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFK 189 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHH
Confidence 45555665442211 1 1345678899899888888885
No 194
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.04 E-value=0.00012 Score=77.78 Aligned_cols=150 Identities=13% Similarity=0.159 Sum_probs=84.6
Q ss_pred CCCCCcccchHHHHHHHHhhcC----------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhcc
Q 041067 159 DNKNKLVGVESKVEEIESILGV----------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQR 228 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 228 (770)
..-.+++|.+..++.|.+.+.. .....+-|.|+|.+|+|||++|+++++..... ++..+..+....
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~v~~~~l~~~ 123 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST----FFSVSSSDLVSK 123 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE----EEEEEHHHHHSC
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC----EEEeeHHHHhhh
Confidence 3345699999999999887631 11223468899999999999999999987432 222211111110
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcchHHHHHH-HHCCCcEEEEEeCCCChH-------------hHHHHHhcccC---CCCC
Q 041067 229 SGGLSCLQQKLLSNLLKHKNVMPFIDLIFR-RLSRMKVLIVFDDVTCLS-------------QLQSLIGSLYW---LTPV 291 (770)
Q Consensus 229 ~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~---~~~g 291 (770)
. .+ ........+.. .-..++.+|+||+++... ....++..+.. ...+
T Consensus 124 ~--------------~g--~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 124 W--------------MG--ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp C-------------------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred h--------------cc--hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 0 00 00111111111 223577899999997532 12333333321 2344
Q ss_pred ceEEEEcCchhhhh-h--cCcceEEEeCccChHHHHHHHH
Q 041067 292 SRIIITTRNKQVLR-N--WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 292 s~IivTTR~~~v~~-~--~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
..||.||...+... . -.....+.+...+.++..+++.
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~ 227 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFE 227 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHH
Confidence 55665665442211 0 1345678899999998888885
No 195
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.96 E-value=5e-05 Score=80.77 Aligned_cols=163 Identities=14% Similarity=0.094 Sum_probs=87.8
Q ss_pred CCCcccchHHHHHHHHhh-cCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEe------------------
Q 041067 161 KNKLVGVESKVEEIESIL-GVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLEN------------------ 221 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~------------------ 221 (770)
-..++|.+..++.+..++ ..+.. .. +.|+|..|+||||+|+.++..+...-...+++..
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~~-~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRDL-PH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS 90 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTCC-CC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEEC
T ss_pred HHHhcCCHHHHHHHHHHHhhCCCC-Ce-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecc
Confidence 456899999999999988 43322 33 8999999999999999999865322111111110
Q ss_pred -----cchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH--hHHHHHhcccCCCCCceE
Q 041067 222 -----VREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS--QLQSLIGSLYWLTPVSRI 294 (770)
Q Consensus 222 -----~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~I 294 (770)
........ ......++.+..+.....-.... .+ ..+.+++-++|+|+++..+ ..+.+...+.....+.++
T Consensus 91 ~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~ 167 (354)
T 1sxj_E 91 PYHLEITPSDMGN-NDRIVIQELLKEVAQMEQVDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRL 167 (354)
T ss_dssp SSEEEECCC-----CCHHHHHHHHHHHTTTTC--------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEE
T ss_pred cceEEecHhhcCC-cchHHHHHHHHHHHHhccccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEE
Confidence 00000000 00001122222221110000000 00 0023466799999998643 345555555444567788
Q ss_pred EEEcCchh-hhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 295 IITTRNKQ-VLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 295 ivTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
|+||.+.+ +... ......+++.+++.++..+.+.
T Consensus 168 Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~ 203 (354)
T 1sxj_E 168 IMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILS 203 (354)
T ss_dssp EEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHH
Confidence 88876643 2221 1224789999999999888875
No 196
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.95 E-value=7.1e-05 Score=78.50 Aligned_cols=147 Identities=16% Similarity=0.168 Sum_probs=89.2
Q ss_pred CCCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHH
Q 041067 159 DNKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQK 238 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (770)
..-++++|.+..++.+..++..+. ...++.+.|.+|+||||+|+.+++.+.. ..+.+. ... . +...+...
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~---~~~~i~-~~~----~-~~~~i~~~ 92 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNA---DMMFVN-GSD----C-KIDFVRGP 92 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTE---EEEEEE-TTT----C-CHHHHHTH
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCC---CEEEEc-ccc----c-CHHHHHHH
Confidence 344679999999999999997432 2456788889999999999999988632 122222 111 1 32222221
Q ss_pred HHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH---hHHHHHhcccCCCCCceEEEEcCchhhh-hh-cCcceEE
Q 041067 239 LLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS---QLQSLIGSLYWLTPVSRIIITTRNKQVL-RN-WGVRKIY 313 (770)
Q Consensus 239 ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~~~~l~~~~~~~~~gs~IivTTR~~~v~-~~-~~~~~~~ 313 (770)
+........ ..+++-++|+|+++... ..+.+...+.....+.++|+||....-. .. ......+
T Consensus 93 -~~~~~~~~~-----------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i 160 (324)
T 3u61_B 93 -LTNFASAAS-----------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVI 160 (324)
T ss_dssp -HHHHHHBCC-----------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEE
T ss_pred -HHHHHhhcc-----------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEE
Confidence 111111000 12367899999998754 4455555444334567888887765321 11 1113579
Q ss_pred EeCccChHHHHHHH
Q 041067 314 EMKALEYHHAIELF 327 (770)
Q Consensus 314 ~l~~L~~~ea~~Lf 327 (770)
++++++.++..+++
T Consensus 161 ~~~~~~~~e~~~il 174 (324)
T 3u61_B 161 TFGQPTDEDKIEMM 174 (324)
T ss_dssp ECCCCCHHHHHHHH
T ss_pred EeCCCCHHHHHHHH
Confidence 99999988855443
No 197
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.92 E-value=1.8e-05 Score=72.27 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=35.9
Q ss_pred CcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 163 KLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 163 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
+++|++..+.++.+.+..-.....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999988775322223347899999999999999999864
No 198
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.91 E-value=5.6e-05 Score=90.07 Aligned_cols=151 Identities=12% Similarity=0.101 Sum_probs=80.3
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC------CceEEEEecchhhccCCCHH
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDF------EGSCFLENVREESQRSGGLS 233 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 233 (770)
.-+.++||++++.++...+.... ...+.++|.+|+||||+|+.+++.+.... ...++..+........ ..
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~-~~- 243 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGA-KY- 243 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------
T ss_pred CCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccC-cc-
Confidence 44569999999999999886432 33478999999999999999999864311 2333332221111000 00
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHH-C-CCcEEEEEeCCCChH---------h-HHHHHhcccCCCCCceEEEEcCch
Q 041067 234 CLQQKLLSNLLKHKNVMPFIDLIFRRL-S-RMKVLIVFDDVTCLS---------Q-LQSLIGSLYWLTPVSRIIITTRNK 301 (770)
Q Consensus 234 ~l~~~ll~~~~~~~~~~~~~~~l~~~L-~-~kr~LlVLDdv~~~~---------~-~~~l~~~~~~~~~gs~IivTTR~~ 301 (770)
..........+.+.+ . +++.+|++|+++... + ...+.+.+. ..+-++|.+|...
T Consensus 244 ------------~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~~~ 309 (854)
T 1qvr_A 244 ------------RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLD 309 (854)
T ss_dssp --------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEECHH
T ss_pred ------------chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecCch
Confidence 000001112222222 2 367999999997643 1 112222222 1233455555433
Q ss_pred hh-----hhh-cCcceEEEeCccChHHHHHHHH
Q 041067 302 QV-----LRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 302 ~v-----~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
.. ... ......+.+++++.++..+++.
T Consensus 310 ~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~ 342 (854)
T 1qvr_A 310 EYREIEKDPALERRFQPVYVDEPTVEETISILR 342 (854)
T ss_dssp HHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHH
T ss_pred HHhhhccCHHHHhCCceEEeCCCCHHHHHHHHH
Confidence 22 111 1112358999999999998886
No 199
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.91 E-value=1.7e-05 Score=75.42 Aligned_cols=118 Identities=20% Similarity=0.221 Sum_probs=61.4
Q ss_pred chHHHHHHHHhhcCCC-CCeEEEEEEecCCCcHHHHHHHHHHHHhCCCC-ceEEEEecchhhccCCCHHHHHHHHHHHHh
Q 041067 167 VESKVEEIESILGVES-KDVYSLGIWGIGGIGKTTIARAIFDKISGDFE-GSCFLENVREESQRSGGLSCLQQKLLSNLL 244 (770)
Q Consensus 167 r~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 244 (770)
....++.+.+++..-. ..-..+.|+|.+|+||||||+.+++.+..... .+.++. ...+...+.....
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~-----------~~~~~~~~~~~~~ 87 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD-----------TKDLIFRLKHLMD 87 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHhc
Confidence 3444444554443211 22457999999999999999999998752212 233432 2233333333222
Q ss_pred cCCCCcchHHHHHHHHCCCcEEEEEeCCCC--hHhHH--HHHhcccC-CCCCceEEEEcCch
Q 041067 245 KHKNVMPFIDLIFRRLSRMKVLIVFDDVTC--LSQLQ--SLIGSLYW-LTPVSRIIITTRNK 301 (770)
Q Consensus 245 ~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~~~--~l~~~~~~-~~~gs~IivTTR~~ 301 (770)
..... .+.+.+. +.-+|||||++. .+.|. .+...+.. ...|..||+||...
T Consensus 88 ~~~~~-----~~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 88 EGKDT-----KFLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HTCCS-----HHHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred CchHH-----HHHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 21111 1222222 456889999973 22222 22222211 13567888888654
No 200
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.90 E-value=3.8e-06 Score=80.38 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=67.0
Q ss_pred cCCCCCCCcEEEecCCCCCCccCCccccCccEEeccCcCccccCcccccCCCCCEEeccCCCCCC----CCCcccCCCCC
Q 041067 625 RIFNLEFLTKLNLSGCSKLKRLPEISSGNISWLFLRETAIEELPSSIERLHRLGYLDLLDCKRLK----SLPRSLWMLKS 700 (770)
Q Consensus 625 ~i~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~----~lp~~l~~l~~ 700 (770)
.+...++|++|+|++|..+.. .....+...+...++|++|+|++|.... .+...+...++
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~----------------~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~ 94 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPV----------------PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNT 94 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCH----------------HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSS
T ss_pred HHhcCCCCCEEEecCCCCCCH----------------HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCC
Confidence 344567788888887621211 1122334445555666666666665422 12333445566
Q ss_pred CcEEEeecCCCCcc----cCcccCCCCCCcEEEc--cCCCCc-----ccchhhhCCCCCcEEecccCc
Q 041067 701 LGVLNLSGCSNLQR----LPECLAQFSSPIILNL--AKTNIE-----RIPKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 701 L~~L~l~~~~~~~~----lp~~l~~l~~L~~L~L--~~~~l~-----~lp~~l~~l~~L~~L~l~~c~ 757 (770)
|++|+|++|..... +...+...++|++|+| ++|.+. .+...+...++|+.|++++|.
T Consensus 95 L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 95 LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred cCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 77777776654332 4455566667777777 667766 255556666777777777765
No 201
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.90 E-value=0.00052 Score=75.11 Aligned_cols=152 Identities=15% Similarity=0.181 Sum_probs=85.9
Q ss_pred CCCCCCcccchHHHHHHHHhhcC----------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhc
Q 041067 158 RDNKNKLVGVESKVEEIESILGV----------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQ 227 (770)
Q Consensus 158 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 227 (770)
...-..++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+++++.... ..++..+..+.
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~---~~~~~v~~~~l-- 204 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDL-- 204 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS---SEEEEECCC----
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC---CCEEEEeHHHH--
Confidence 34446799999999999887631 1123467999999999999999999998621 11221111111
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCcchHHHHHHH-HCCCcEEEEEeCCCCh-------------HhHHHHHhcccCC---CC
Q 041067 228 RSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRR-LSRMKVLIVFDDVTCL-------------SQLQSLIGSLYWL---TP 290 (770)
Q Consensus 228 ~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~-------------~~~~~l~~~~~~~---~~ 290 (770)
... ..+. .......+.+. -...+.+|++|+++.. .....++..+... ..
T Consensus 205 --------~~~----~~g~--~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 205 --------VSK----WLGE--SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp ---------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred --------Hhh----hcch--HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 111 1110 11112222222 2356789999999864 1133444443322 34
Q ss_pred CceEEEEcCchhhhhh---cCcceEEEeCccChHHHHHHHH
Q 041067 291 VSRIIITTRNKQVLRN---WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 291 gs~IivTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+..||.||...+.... -.....+.+...+.++..+++.
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~ 311 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFR 311 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHH
Confidence 4556666655432211 1334678888888888888875
No 202
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.90 E-value=0.00043 Score=73.83 Aligned_cols=52 Identities=21% Similarity=0.215 Sum_probs=39.9
Q ss_pred CCCcccchHHHHHHH---HhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 161 KNKLVGVESKVEEIE---SILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~---~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
.+.++|++..++.+. ..+..+....+.+.|+|++|+|||++|+.+++.....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~ 97 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 457999999987754 4444333334689999999999999999999987644
No 203
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.88 E-value=0.00027 Score=76.12 Aligned_cols=151 Identities=13% Similarity=0.083 Sum_probs=82.1
Q ss_pred CCCCCCcccchHHHHHHHHhhcC----------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhc
Q 041067 158 RDNKNKLVGVESKVEEIESILGV----------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQ 227 (770)
Q Consensus 158 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 227 (770)
+..-..++|.+..++.+...+.. .....+.|.|+|.+|+|||++|+.+++.... .++..+..+...
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~----~~~~v~~~~l~~ 186 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA----TFFNISAASLTS 186 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC----EEEEECSCCC--
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC----cEEEeeHHHhhc
Confidence 34456799999999999988731 0112467899999999999999999887532 222222221111
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCcchHHHH-HHHHCCCcEEEEEeCCCCh-------------HhHHHHHhcccC----CC
Q 041067 228 RSGGLSCLQQKLLSNLLKHKNVMPFIDLI-FRRLSRMKVLIVFDDVTCL-------------SQLQSLIGSLYW----LT 289 (770)
Q Consensus 228 ~~~~~~~l~~~ll~~~~~~~~~~~~~~~l-~~~L~~kr~LlVLDdv~~~-------------~~~~~l~~~~~~----~~ 289 (770)
.. . + ........+ ...-...+.+|+||+++.. .....++..+.. ..
T Consensus 187 ~~------~--------g--~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 187 KY------V--------G--EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred cc------c--------c--hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 00 0 0 000111111 1112345679999999654 012223222211 12
Q ss_pred CCceEEEEcCchhhhhh---cCcceEEEeCccChHHHHHHHH
Q 041067 290 PVSRIIITTRNKQVLRN---WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 290 ~gs~IivTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
....||.||...+.... -.....+.+...+.++..+++.
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~ 292 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLK 292 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHH
Confidence 23455556654322111 1233578888999999888875
No 204
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.88 E-value=1.7e-05 Score=76.95 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=39.6
Q ss_pred CCcccch----HHHHHHHHhhcCCCC--CeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 162 NKLVGVE----SKVEEIESILGVESK--DVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 162 ~~~vGr~----~~~~~l~~~L~~~~~--~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
++|++.+ ..++.+..++..... ....+.|+|.+|+||||||+.+++....+....+|+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4566544 234445555543222 1267899999999999999999998776655556654
No 205
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.88 E-value=0.00033 Score=76.46 Aligned_cols=145 Identities=19% Similarity=0.289 Sum_probs=85.3
Q ss_pred CCCCCcccchHHH---HHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHH
Q 041067 159 DNKNKLVGVESKV---EEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCL 235 (770)
Q Consensus 159 ~~~~~~vGr~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 235 (770)
..-+.++|.+..+ ..+...+..+ ....+.|||.+|+||||+|+.+++.....|. -+. ... . +...+
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~---~l~---a~~--~-~~~~i 91 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVE---RIS---AVT--S-GVKEI 91 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEE---EEE---TTT--C-CHHHH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeE---EEE---ecc--C-CHHHH
Confidence 3446799999888 6777777543 3467999999999999999999998654321 111 111 1 33332
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH--hHHHHHhcccCCCCCceEEEEcCchhh--hh-hcCcc
Q 041067 236 QQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS--QLQSLIGSLYWLTPVSRIIITTRNKQV--LR-NWGVR 310 (770)
Q Consensus 236 ~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~v--~~-~~~~~ 310 (770)
... +... ......+++.+|++|+++... +.+.++..+.. +.-.-|..||.+... .. .....
T Consensus 92 r~~-~~~a------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL~sR~ 157 (447)
T 3pvs_A 92 REA-IERA------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSALLSRA 157 (447)
T ss_dssp HHH-HHHH------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHHHHTTE
T ss_pred HHH-HHHH------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHHhCce
Confidence 221 1111 011124678899999998653 34445554432 222222235555431 11 12234
Q ss_pred eEEEeCccChHHHHHHHH
Q 041067 311 KIYEMKALEYHHAIELFI 328 (770)
Q Consensus 311 ~~~~l~~L~~~ea~~Lf~ 328 (770)
.++.+++++.++..+++.
T Consensus 158 ~v~~l~~l~~edi~~il~ 175 (447)
T 3pvs_A 158 RVYLLKSLSTEDIEQVLT 175 (447)
T ss_dssp EEEECCCCCHHHHHHHHH
T ss_pred eEEeeCCcCHHHHHHHHH
Confidence 688999999999988886
No 206
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=0.00035 Score=74.04 Aligned_cols=171 Identities=18% Similarity=0.231 Sum_probs=98.9
Q ss_pred CCcccchHHHHHHHHhhcC-----------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCC
Q 041067 162 NKLVGVESKVEEIESILGV-----------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSG 230 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 230 (770)
+++.|.++.+++|.+.+.. +-...+-|-++|++|.|||.||+++++.....| +..+..+......
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk~v 223 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQKYI 223 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCSST
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhcccc
Confidence 5688999999999887642 223356789999999999999999999875443 2222333222221
Q ss_pred C-HHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH----------------hHHHHHhcccCCC--CC
Q 041067 231 G-LSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS----------------QLQSLIGSLYWLT--PV 291 (770)
Q Consensus 231 ~-~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~--~g 291 (770)
+ -....++++. ..-...+++|++|+++... ....++..+..+. .+
T Consensus 224 Gese~~vr~lF~----------------~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 224 GEGSRMVRELFV----------------MAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp THHHHHHHHHHH----------------HHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred chHHHHHHHHHH----------------HHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 1 1112222221 1123568999999996421 1334444444333 33
Q ss_pred ceEEEEcCchhhh-----hhcCcceEEEeCccChHHHHHHHHHhccCCCchh----HHHHhhHhcCCCHHH
Q 041067 292 SRIIITTRNKQVL-----RNWGVRKIYEMKALEYHHAIELFIMKYAQGVPLA----LKVLGCFLYEREKEV 353 (770)
Q Consensus 292 s~IivTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~glPLa----l~~~g~~L~~~~~~~ 353 (770)
-.||.||...+.. +....+..+.++.-+.++..++|. .++.+.|++ +..+|....+-+..+
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~-~~~~~~~l~~dvdl~~lA~~t~G~SGAD 357 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILR-IHSRKMNLTRGINLRKVAEKMNGCSGAD 357 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHH-HHHTTSBCCSSCCHHHHHHHCCSCCHHH
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHH-HHhcCCCCCccCCHHHHHHHCCCCCHHH
Confidence 4456666655432 112446789999989888888885 233444443 444444443434333
No 207
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.78 E-value=0.00051 Score=69.20 Aligned_cols=151 Identities=15% Similarity=0.154 Sum_probs=81.9
Q ss_pred CCCCCcccchHHHHHHHHhhcC---C-------CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhcc
Q 041067 159 DNKNKLVGVESKVEEIESILGV---E-------SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQR 228 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 228 (770)
..-++++|.+..++++.+.+.. . ....+-+.|+|.+|+||||+|+.+++.....| +.+. ..+....
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~~ 84 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVEM 84 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTTS
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHHH
Confidence 3445789999888887665431 1 11234588999999999999999998764332 2222 1111110
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh----------------HhHHHHHhcccCC--CC
Q 041067 229 SGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL----------------SQLQSLIGSLYWL--TP 290 (770)
Q Consensus 229 ~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~~--~~ 290 (770)
..+ .........+.......+.++++|+++.. .....++..+... ..
T Consensus 85 ~~~---------------~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 85 FVG---------------VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp CCC---------------CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred hhh---------------hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 000 00001111222223456789999998321 1223333333221 23
Q ss_pred CceEEEEcCchhhh-hhc----CcceEEEeCccChHHHHHHHH
Q 041067 291 VSRIIITTRNKQVL-RNW----GVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 291 gs~IivTTR~~~v~-~~~----~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+..||.||...+.. ... .....+.++..+.++-.+++.
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~ 192 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILK 192 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHH
Confidence 45566677655422 111 234678888888888777764
No 208
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.77 E-value=0.00025 Score=78.28 Aligned_cols=170 Identities=15% Similarity=0.174 Sum_probs=95.1
Q ss_pred CCcccchHHHHHHHHhhcCC-----------CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCC
Q 041067 162 NKLVGVESKVEEIESILGVE-----------SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSG 230 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 230 (770)
..++|.+..++++.+++... ....+-|.|+|.+|+|||++|+++++.... .++..+..+......
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~----~fv~vn~~~l~~~~~ 279 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA----FFFLINGPEIMSKLA 279 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS----EEEEEEHHHHHTSCT
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC----CEEEEEchHhhhhhc
Confidence 46999999999998887532 334557899999999999999999887532 222222222211110
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh-------------HhHHHHHhcccCC--CCCceEE
Q 041067 231 GLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL-------------SQLQSLIGSLYWL--TPVSRII 295 (770)
Q Consensus 231 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~~~~l~~~~~~~--~~gs~Ii 295 (770)
+ .... .....+.....+++.+|+||+++.. .....++..+... ..+.+||
T Consensus 280 g--~~~~-------------~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vI 344 (489)
T 3hu3_A 280 G--ESES-------------NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (489)
T ss_dssp T--HHHH-------------HHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEE
T ss_pred c--hhHH-------------HHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEE
Confidence 0 0000 1112223333466789999998321 1123333333221 2344555
Q ss_pred EEcCchhh-hhh----cCcceEEEeCccChHHHHHHHHHhccCCCchh----HHHHhhHhcCCCH
Q 041067 296 ITTRNKQV-LRN----WGVRKIYEMKALEYHHAIELFIMKYAQGVPLA----LKVLGCFLYEREK 351 (770)
Q Consensus 296 vTTR~~~v-~~~----~~~~~~~~l~~L~~~ea~~Lf~~~~~~glPLa----l~~~g~~L~~~~~ 351 (770)
.||...+. ... ......+.+...+.++..+++. .++...|+. +..++....+.+.
T Consensus 345 aaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~-~~~~~~~l~~~~~l~~la~~t~g~s~ 408 (489)
T 3hu3_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ-IHTKNMKLADDVDLEQVANETHGHVG 408 (489)
T ss_dssp EEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHH-HHTTTSCBCTTCCHHHHHHTCTTCCH
T ss_pred EecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHH-HHHhcCCCcchhhHHHHHHHccCCcH
Confidence 56665432 111 1334678999999999999985 334444433 3444444333333
No 209
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.77 E-value=0.0005 Score=73.92 Aligned_cols=157 Identities=17% Similarity=0.236 Sum_probs=86.8
Q ss_pred CCCcccchHHHHHHHHhhcC-----------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccC
Q 041067 161 KNKLVGVESKVEEIESILGV-----------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRS 229 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 229 (770)
-.++.|.++.+++|.+.+.. +-...+-|.++|++|+|||++|+++++.....| +..+..+.....
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~----~~v~~~~l~~~~ 246 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF----IRVNGSEFVHKY 246 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE----EEEEGGGTCCSS
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----EEEecchhhccc
Confidence 35789999999998876642 223466799999999999999999999875432 222233322221
Q ss_pred CC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH----------------hHHHHHhcccCC--CC
Q 041067 230 GG-LSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS----------------QLQSLIGSLYWL--TP 290 (770)
Q Consensus 230 ~~-~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~--~~ 290 (770)
.+ .....+.++. ..-...++++++|+++... ....++..+..+ ..
T Consensus 247 ~Ge~e~~ir~lF~----------------~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~ 310 (428)
T 4b4t_K 247 LGEGPRMVRDVFR----------------LARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST 310 (428)
T ss_dssp CSHHHHHHHHHHH----------------HHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred cchhHHHHHHHHH----------------HHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC
Confidence 11 1111222211 1223568999999984211 133344433322 23
Q ss_pred CceEEEEcCchhhh-----hhcCcceEEEeCccChHHHHHHHHHhccCCCch
Q 041067 291 VSRIIITTRNKQVL-----RNWGVRKIYEMKALEYHHAIELFIMKYAQGVPL 337 (770)
Q Consensus 291 gs~IivTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~glPL 337 (770)
+-.||.||...+.. +....+..+++..++..++...+.-..+.+.|+
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l 362 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL 362 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB
T ss_pred CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC
Confidence 44566677654432 112345677887776655544332223334443
No 210
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.70 E-value=0.00073 Score=72.59 Aligned_cols=172 Identities=15% Similarity=0.251 Sum_probs=97.8
Q ss_pred CCCcccchHHHHHHHHhhcC-----------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccC
Q 041067 161 KNKLVGVESKVEEIESILGV-----------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRS 229 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 229 (770)
-.++.|.++.+++|.+.+.. +-.-.+-|.++|++|.|||+||+++++.....| +.....+.....
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk~ 283 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQKY 283 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCCS
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhccc
Confidence 35799999999999876532 223467799999999999999999999875432 222222222221
Q ss_pred CCH-HHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH----------------hHHHHHhcccCCCC--
Q 041067 230 GGL-SCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS----------------QLQSLIGSLYWLTP-- 290 (770)
Q Consensus 230 ~~~-~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~~-- 290 (770)
.+- ....+.++. ..-...+++|++|+++... ....++..+..+..
T Consensus 284 vGesek~ir~lF~----------------~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 284 VGEGARMVRELFE----------------MARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp SSHHHHHHHHHHH----------------HHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred CCHHHHHHHHHHH----------------HHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 111 111222211 1223568999999986421 12233333333332
Q ss_pred CceEEEEcCchhhhh-----hcCcceEEEeCccChHHHHHHHHHhccCCCchh----HHHHhhHhcCCCHHH
Q 041067 291 VSRIIITTRNKQVLR-----NWGVRKIYEMKALEYHHAIELFIMKYAQGVPLA----LKVLGCFLYEREKEV 353 (770)
Q Consensus 291 gs~IivTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~glPLa----l~~~g~~L~~~~~~~ 353 (770)
+-.||.||-..+.+. ....+..+++..-+.++..++|. .++.++|++ +..+|....+-+..+
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk-~~l~~~~l~~dvdl~~LA~~T~GfSGAD 418 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFR-IHSKSMSVERGIRWELISRLCPNSTGAE 418 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHH-HHHTTSCBCSSCCHHHHHHHCCSCCHHH
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHH-HHhcCCCCCCCCCHHHHHHHCCCCCHHH
Confidence 334555665443321 12346788999888888888885 223344432 344454443434333
No 211
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.62 E-value=0.0012 Score=69.44 Aligned_cols=140 Identities=12% Similarity=0.126 Sum_probs=83.9
Q ss_pred hHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCC---------------------ceEEEEecchhh
Q 041067 168 ESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFE---------------------GSCFLENVREES 226 (770)
Q Consensus 168 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---------------------~~~~~~~~~~~~ 226 (770)
++..+.+...+..+. -...+.++|..|+||||+|+.+++.+..... ...++. ..+..
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~-~~~~~ 85 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLA-PEKGK 85 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEEC-CCTTC
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEe-ccccC
Confidence 445566666664332 2456889999999999999999998643221 111211 00000
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH-----CCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEcC
Q 041067 227 QRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRL-----SRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITTR 299 (770)
Q Consensus 227 ~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR 299 (770)
... ++.. +..+.+.+ .+++-++|+|+++.. +..+.++..+....+++.+|++|.
T Consensus 86 ~~~-~i~~------------------ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~ 146 (334)
T 1a5t_A 86 NTL-GVDA------------------VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATR 146 (334)
T ss_dssp SSB-CHHH------------------HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEES
T ss_pred CCC-CHHH------------------HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 001 2211 11222222 246788999999864 346667777665566777777776
Q ss_pred chh-hhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 300 NKQ-VLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 300 ~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+.+ +... ......+.+.++++++..+.+.
T Consensus 147 ~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~ 177 (334)
T 1a5t_A 147 EPERLLATLRSRCRLHYLAPPPEQYAVTWLS 177 (334)
T ss_dssp CGGGSCHHHHTTSEEEECCCCCHHHHHHHHH
T ss_pred ChHhCcHHHhhcceeeeCCCCCHHHHHHHHH
Confidence 653 3322 2334689999999999888874
No 212
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.60 E-value=3e-05 Score=78.11 Aligned_cols=80 Identities=19% Similarity=0.109 Sum_probs=56.7
Q ss_pred ccCCCCCEEeccCCCCCC--CCCcccCCCCCCcEEEeecCCCCcccCcccCCCC--CCcEEEccCCCCc-ccc-------
Q 041067 672 ERLHRLGYLDLLDCKRLK--SLPRSLWMLKSLGVLNLSGCSNLQRLPECLAQFS--SPIILNLAKTNIE-RIP------- 739 (770)
Q Consensus 672 ~~l~~L~~L~L~~~~~~~--~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~--~L~~L~L~~~~l~-~lp------- 739 (770)
.++++|+.|+|++|...+ .+|..+..+++|+.|+|++|...+. ..+..+. +|++|+|++|++. .+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 467788888888887655 4555667788888888888765442 2233333 8999999999987 344
Q ss_pred hhhhCCCCCcEEec
Q 041067 740 KSISQLLMLRYLLL 753 (770)
Q Consensus 740 ~~l~~l~~L~~L~l 753 (770)
..+..+|+|+.|+=
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 23677888888863
No 213
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.59 E-value=0.00032 Score=77.32 Aligned_cols=145 Identities=12% Similarity=0.119 Sum_probs=78.8
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC------CceEEEEecchhhccCCCHH
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDF------EGSCFLENVREESQRSGGLS 233 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 233 (770)
.-+.++||+.+++.+...+.... ...+.|+|.+|+|||++|+.++..+...+ +..++..+.. .
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~------ 246 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---T------ 246 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---c------
Confidence 34569999999999999986432 33568999999999999999999874432 1222211111 0
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChHhHHHHHhcccCCCCCceEEEEcCchhhh---hh----
Q 041067 234 CLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLSQLQSLIGSLYWLTPVSRIIITTRNKQVL---RN---- 306 (770)
Q Consensus 234 ~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~---~~---- 306 (770)
...+ .........+...-...+.++++| ...+....+.+.+. ...-++|.+|...... ..
T Consensus 247 --------~~~g-~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al 313 (468)
T 3pxg_A 247 --------KYRG-EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAAL 313 (468)
T ss_dssp ---------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred --------cccc-hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHH
Confidence 0000 000111122222333567888999 22222233433332 1234555555443311 11
Q ss_pred cCcceEEEeCccChHHHHHHHH
Q 041067 307 WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 307 ~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
.....++.++..+.++..+++.
T Consensus 314 ~~Rf~~i~v~~p~~e~~~~iL~ 335 (468)
T 3pxg_A 314 ERRFQPIQVDQPSVDESIQILQ 335 (468)
T ss_dssp HHSEEEEECCCCCHHHHHHHHH
T ss_pred HHhCccceeCCCCHHHHHHHHH
Confidence 1123479999999999999986
No 214
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.58 E-value=0.00025 Score=73.76 Aligned_cols=57 Identities=18% Similarity=0.318 Sum_probs=41.4
Q ss_pred CcccchHHHHHHHHhhcCC------C-CCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEE
Q 041067 163 KLVGVESKVEEIESILGVE------S-KDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFL 219 (770)
Q Consensus 163 ~~vGr~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 219 (770)
.++|.+..++.+...+... . .....+.++|.+|+||||+|+.++......-...+.+
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 81 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEe
Confidence 4789999988887777532 1 1235799999999999999999999865432333343
No 215
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.56 E-value=2.5e-05 Score=73.04 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=20.8
Q ss_pred ceeEEeccCCCCCcccCccCCCCCCCcEEEecCCCC
Q 041067 607 KLVLLNLRGSKSLKRLPSRIFNLEFLTKLNLSGCSK 642 (770)
Q Consensus 607 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~ 642 (770)
+|+.||+++|.....--..+..+++|++|+|++|..
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ 97 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHY 97 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCc
Confidence 466666666663322222345667777777777763
No 216
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.0012 Score=70.23 Aligned_cols=172 Identities=16% Similarity=0.203 Sum_probs=97.1
Q ss_pred CCCcccchHHHHHHHHhhcC-----------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccC
Q 041067 161 KNKLVGVESKVEEIESILGV-----------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRS 229 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 229 (770)
-+++.|.++.+++|.+.+.. +-.-.+-|-++|++|.|||.||+++++.....| +..+..+.....
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~sk~ 256 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQKY 256 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCCSS
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhhcc
Confidence 35688999999998876642 223357799999999999999999999875432 222233332222
Q ss_pred CC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH----------------hHHHHHhcccCCC--C
Q 041067 230 GG-LSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS----------------QLQSLIGSLYWLT--P 290 (770)
Q Consensus 230 ~~-~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~--~ 290 (770)
.+ -....+.++.. .-+..+++|++|+++... ....++..+..+. .
T Consensus 257 vGesek~ir~lF~~----------------Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 257 LGDGPRLCRQIFKV----------------AGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp SSHHHHHHHHHHHH----------------HHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CchHHHHHHHHHHH----------------HHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 11 11222222211 113568999999886321 1333444333333 3
Q ss_pred CceEEEEcCchhhhhh-c----CcceEEEeCccChHHHHHHHHHhccCCCchh----HHHHhhHhcCCCHHH
Q 041067 291 VSRIIITTRNKQVLRN-W----GVRKIYEMKALEYHHAIELFIMKYAQGVPLA----LKVLGCFLYEREKEV 353 (770)
Q Consensus 291 gs~IivTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~~~~glPLa----l~~~g~~L~~~~~~~ 353 (770)
+-.||.||-..+.+.. + ..+..+.+..-+.++..++|. .++...|++ +..+|..-.+-+..+
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~-~~l~~~~l~~dvdl~~LA~~T~GfSGAD 391 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILG-IHTSKMNLSEDVNLETLVTTKDDLSGAD 391 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHH-HHHTTSCBCSCCCHHHHHHHCCSCCHHH
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHH-HHhcCCCCCCcCCHHHHHHhCCCCCHHH
Confidence 4456667765544322 1 335678888888888888885 233444443 444444433333333
No 217
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.55 E-value=0.0014 Score=71.69 Aligned_cols=148 Identities=15% Similarity=0.212 Sum_probs=85.0
Q ss_pred CCcccchHHHHHHHHhhcC----------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCC
Q 041067 162 NKLVGVESKVEEIESILGV----------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGG 231 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 231 (770)
.+++|.++.++++.+.+.. +..-.+-|.|+|++|+||||||+.++......| +.+ +..+......+
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f---~~i-s~~~~~~~~~g 91 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF---FHI-SGSDFVELFVG 91 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE---EEE-EGGGTTTCCTT
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe---eeC-CHHHHHHHHhc
Confidence 4689999988888776531 111234588999999999999999999764332 122 22222221111
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh----------------HhHHHHHhcccCC--CCCce
Q 041067 232 LSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL----------------SQLQSLIGSLYWL--TPVSR 293 (770)
Q Consensus 232 ~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~~--~~gs~ 293 (770)
... . .....+.......+.+|++|+++.. .....++..+..+ ..+..
T Consensus 92 ~~~--~-------------~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~vi 156 (476)
T 2ce7_A 92 VGA--A-------------RVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGII 156 (476)
T ss_dssp HHH--H-------------HHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEE
T ss_pred ccH--H-------------HHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEE
Confidence 100 0 1112233333467899999999542 1233444333222 23456
Q ss_pred EEEEcCchhhhhh--c---CcceEEEeCccChHHHHHHHH
Q 041067 294 IIITTRNKQVLRN--W---GVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 294 IivTTR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
||.||...+.+.. . ..+..+.++..+.++-.+++.
T Consensus 157 VIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~ 196 (476)
T 2ce7_A 157 VMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILE 196 (476)
T ss_dssp EEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHH
T ss_pred EEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHH
Confidence 6777766654321 1 234578888888888777775
No 218
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.00098 Score=71.78 Aligned_cols=148 Identities=16% Similarity=0.262 Sum_probs=88.7
Q ss_pred CCCcccchHHHHHHHHhhcC-----------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccC
Q 041067 161 KNKLVGVESKVEEIESILGV-----------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRS 229 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 229 (770)
-+++.|.++.+++|.+.+.. +-.-.+-|.++|++|.|||+||+++++..... ++..+..+.....
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~----~~~v~~s~l~sk~ 255 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN----FIFSPASGIVDKY 255 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGGTCCSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC----EEEEehhhhcccc
Confidence 35688999999998876642 22336789999999999999999999987543 2322233332222
Q ss_pred CCH-HHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH----------------hHHHHHhcccCCC--C
Q 041067 230 GGL-SCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS----------------QLQSLIGSLYWLT--P 290 (770)
Q Consensus 230 ~~~-~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~--~ 290 (770)
.+- ....+.++ ...-...+++|++|+++... .+..++..+..+. .
T Consensus 256 ~Gese~~ir~~F----------------~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 256 IGESARIIREMF----------------AYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp SSHHHHHHHHHH----------------HHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred chHHHHHHHHHH----------------HHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 111 11111111 11123578999999996421 1334444443222 3
Q ss_pred CceEEEEcCchhhhhh-----cCcceEEEeCccChHHHHHHHH
Q 041067 291 VSRIIITTRNKQVLRN-----WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 291 gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+..||.||-..+.... ...+..+.++.-+.++..++|.
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~ 362 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFK 362 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHH
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHH
Confidence 4466667765543321 1245678888888888888885
No 219
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.0011 Score=71.17 Aligned_cols=149 Identities=15% Similarity=0.190 Sum_probs=88.5
Q ss_pred CCCCcccchHHHHHHHHhhcC-----------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhcc
Q 041067 160 NKNKLVGVESKVEEIESILGV-----------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQR 228 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 228 (770)
.-.++.|.++.+++|.+.+.. +-...+-|.++|++|.|||+||+++++..... ++..+..+....
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~----f~~v~~s~l~~~ 254 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT----FLKLAAPQLVQM 254 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGGGCSS
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC----EEEEehhhhhhc
Confidence 345789999999999876531 22336789999999999999999999986543 232223333222
Q ss_pred CCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH----------------hHHHHHhcccCCCC-
Q 041067 229 SGG-LSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS----------------QLQSLIGSLYWLTP- 290 (770)
Q Consensus 229 ~~~-~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~~- 290 (770)
..+ -....+.++.. .-...+++|++|+++... ....++..+..+..
T Consensus 255 ~vGese~~ir~lF~~----------------A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 255 YIGEGAKLVRDAFAL----------------AKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp CSSHHHHHHHHHHHH----------------HHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred ccchHHHHHHHHHHH----------------HHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 211 11122222211 112467999999985321 12334444443333
Q ss_pred -CceEEEEcCchhhhhh-----cCcceEEEeCccChHHHHHHHH
Q 041067 291 -VSRIIITTRNKQVLRN-----WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 291 -gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+-.||.||...+.... ...+..+.++.-+.++..++|.
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~ 362 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQ 362 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHH
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHH
Confidence 3345557765543321 1345788898888888888886
No 220
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.53 E-value=0.0013 Score=77.52 Aligned_cols=149 Identities=15% Similarity=0.225 Sum_probs=86.3
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC------CCceEEEEecchhhcc---CC
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD------FEGSCFLENVREESQR---SG 230 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~~~~~~~~~---~~ 230 (770)
.-+.++||+.+++++.+.|... ....+.|+|.+|+||||+|+.+++.+... ....+|..+....... ..
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g 261 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG 261 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSS
T ss_pred CCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccc
Confidence 3456999999999999998644 23457899999999999999999886321 2333443322111100 00
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHC-CCcEEEEEeCCCCh----------HhHHHHHhcccCCCCCceEEEEcC
Q 041067 231 GLSCLQQKLLSNLLKHKNVMPFIDLIFRRLS-RMKVLIVFDDVTCL----------SQLQSLIGSLYWLTPVSRIIITTR 299 (770)
Q Consensus 231 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~-~kr~LlVLDdv~~~----------~~~~~l~~~~~~~~~gs~IivTTR 299 (770)
... .....+.+.+. .++.+|++|+++.. .+...++..... ..+.++|.+|.
T Consensus 262 ~~e-----------------~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~ 323 (758)
T 1r6b_X 262 DFE-----------------KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTT 323 (758)
T ss_dssp CHH-----------------HHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEEC
T ss_pred hHH-----------------HHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeC
Confidence 111 11222223332 35689999999754 122223322221 23345666665
Q ss_pred chhhhhhc-------CcceEEEeCccChHHHHHHHH
Q 041067 300 NKQVLRNW-------GVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 300 ~~~v~~~~-------~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
........ .....+.+...+.++..+++.
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~ 359 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIIN 359 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHH
Confidence 44322111 112478999999999988885
No 221
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.51 E-value=1.6e-05 Score=76.00 Aligned_cols=118 Identities=13% Similarity=0.034 Sum_probs=74.6
Q ss_pred CCCccceeEEeccCC-CCCc----ccCccCCCCCCCcEEEecCCCCCCccCCccccCccEEeccCcCccccCcccccCCC
Q 041067 602 MPRLNKLVLLNLRGS-KSLK----RLPSRIFNLEFLTKLNLSGCSKLKRLPEISSGNISWLFLRETAIEELPSSIERLHR 676 (770)
Q Consensus 602 ~~~L~~L~~L~L~~~-~~l~----~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~l~~~~i~~lp~~i~~l~~ 676 (770)
+.+.++|++|+|++| .... .+...+...++|++|+|++|..-. .....+...+...++
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~-----------------~g~~~l~~~L~~n~~ 94 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND-----------------PVAFALAEMLKVNNT 94 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH-----------------HHHHHHHHHHHHCSS
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh-----------------HHHHHHHHHHHhCCC
Confidence 345678999999999 5322 244455567788888888876211 112234444555667
Q ss_pred CCEEeccCCCCCC----CCCcccCCCCCCcEEEe--ecCCCCcc----cCcccCCCCCCcEEEccCCCCc
Q 041067 677 LGYLDLLDCKRLK----SLPRSLWMLKSLGVLNL--SGCSNLQR----LPECLAQFSSPIILNLAKTNIE 736 (770)
Q Consensus 677 L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~l--~~~~~~~~----lp~~l~~l~~L~~L~L~~~~l~ 736 (770)
|++|+|++|.... .+...+...++|++|+| ++|..... +.+.+...++|++|++++|.+.
T Consensus 95 L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 95 LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred cCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 7777777776432 14455666777888888 55554332 3445556678888888888765
No 222
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.49 E-value=0.00067 Score=70.00 Aligned_cols=143 Identities=11% Similarity=0.104 Sum_probs=88.4
Q ss_pred cchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHh---CCCCceEEEEecchhhccCCCHHHHHHHHHHH
Q 041067 166 GVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKIS---GDFEGSCFLENVREESQRSGGLSCLQQKLLSN 242 (770)
Q Consensus 166 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~---~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 242 (770)
|-++.++.+...+..+. .....++|+.|+||||+|+.+++... ..+.....+. ... ... ++..+. ++...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~-~~~--~~~-~id~ir-~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID-PEG--ENI-GIDDIR-TIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC-CSS--SCB-CHHHHH-HHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc-CCc--CCC-CHHHHH-HHHHH
Confidence 34556677777776544 67889999999999999999987631 1122333333 110 011 333332 23333
Q ss_pred HhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEcCch-hhhhhcCcceEEEeCccC
Q 041067 243 LLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITTRNK-QVLRNWGVRKIYEMKALE 319 (770)
Q Consensus 243 ~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~-~v~~~~~~~~~~~l~~L~ 319 (770)
..... ..+++-++|+|+++.. +..+.++..+....+.+.+|++|.+. .+......- .+++++++
T Consensus 74 ~~~~p------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~ 140 (305)
T 2gno_A 74 LNYSP------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNV 140 (305)
T ss_dssp HTSCC------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCC
T ss_pred Hhhcc------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCC
Confidence 32111 1245678899999764 45677777776666777777776544 344443334 89999999
Q ss_pred hHHHHHHHH
Q 041067 320 YHHAIELFI 328 (770)
Q Consensus 320 ~~ea~~Lf~ 328 (770)
+++..+.+.
T Consensus 141 ~~~i~~~L~ 149 (305)
T 2gno_A 141 PKEFRDLVK 149 (305)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988874
No 223
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.49 E-value=0.00047 Score=71.52 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=37.8
Q ss_pred CcccchHHHHHHHHhhcC------------CCCCeEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 163 KLVGVESKVEEIESILGV------------ESKDVYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 163 ~~vGr~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.++|.+..++.+...+.. .......+.++|.+|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999888877643 011244688999999999999999998874
No 224
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.47 E-value=0.00044 Score=72.96 Aligned_cols=150 Identities=14% Similarity=0.234 Sum_probs=87.2
Q ss_pred CCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC-CCceEEEEecchhhccCCCHHHHHHHHH
Q 041067 162 NKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD-FEGSCFLENVREESQRSGGLSCLQQKLL 240 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll 240 (770)
..++|.+..++.+...+..+ ++..+.++|..|+||||+|+.++..+... +...+.-.+. +... +...+.+ ..
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~---~~~~-~~~~ir~-~i 97 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA---SDDR-GIDVVRN-QI 97 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT---TSCC-SHHHHHT-HH
T ss_pred HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC---cccc-cHHHHHH-HH
Confidence 45789999999998888644 33338999999999999999999886432 2211111111 1111 3322222 11
Q ss_pred HHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh--HhHHHHHhcccCCCCCceEEEEcCchh-hhhh-cCcceEEEeC
Q 041067 241 SNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL--SQLQSLIGSLYWLTPVSRIIITTRNKQ-VLRN-WGVRKIYEMK 316 (770)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~-v~~~-~~~~~~~~l~ 316 (770)
........ .+.+.+-++|+|+++.. +..+.+...+.......++|++|.... +... ......+.+.
T Consensus 98 ~~~~~~~~----------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~ 167 (340)
T 1sxj_C 98 KDFASTRQ----------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQ 167 (340)
T ss_dssp HHHHHBCC----------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred HHHHhhcc----------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEecc
Confidence 11110000 01234678999998653 345555555544456677777765442 2111 1223578999
Q ss_pred ccChHHHHHHHH
Q 041067 317 ALEYHHAIELFI 328 (770)
Q Consensus 317 ~L~~~ea~~Lf~ 328 (770)
+++.++..+.+.
T Consensus 168 ~l~~~~~~~~l~ 179 (340)
T 1sxj_C 168 PLPQEAIERRIA 179 (340)
T ss_dssp CCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999998877764
No 225
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.44 E-value=4.7e-05 Score=69.30 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=34.0
Q ss_pred CCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 162 NKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
-.++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 358899999998888775311222347899999999999999998753
No 226
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.39 E-value=0.00043 Score=63.26 Aligned_cols=36 Identities=17% Similarity=0.351 Sum_probs=27.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
-..++|+|..|+|||||++.++......-...+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 357999999999999999999998754311255554
No 227
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.37 E-value=0.0011 Score=77.84 Aligned_cols=145 Identities=12% Similarity=0.124 Sum_probs=80.4
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC------CceEEEEecchhhccCCCHH
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDF------EGSCFLENVREESQRSGGLS 233 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 233 (770)
.-+.+|||+.+++++...+.... ..-+.++|.+|+|||++|+.+++.+.... ...++..+. .
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-----g----- 245 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-----G----- 245 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----c-----
Confidence 34579999999999999986432 23478999999999999999999864321 222221111 0
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChHhHHHHHhcccCCCCCceEEEEcCchhhhh---h----
Q 041067 234 CLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLSQLQSLIGSLYWLTPVSRIIITTRNKQVLR---N---- 306 (770)
Q Consensus 234 ~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~---~---- 306 (770)
. ...+ .........+.+.-..++.+|++| ...+....+.+.+. ...-++|.||....... .
T Consensus 246 ---~----~~~G-~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al 313 (758)
T 3pxi_A 246 ---T----KYRG-EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAAL 313 (758)
T ss_dssp ---------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred ---c----cccc-hHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHH
Confidence 0 0000 001122223333334677899999 22222233333332 22345665555443110 0
Q ss_pred cCcceEEEeCccChHHHHHHHH
Q 041067 307 WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 307 ~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
......+.++..+.++..+++.
T Consensus 314 ~rRf~~i~v~~p~~~~~~~il~ 335 (758)
T 3pxi_A 314 ERRFQPIQVDQPSVDESIQILQ 335 (758)
T ss_dssp HHSEEEEECCCCCHHHHHHHHH
T ss_pred HhhCcEEEeCCCCHHHHHHHHH
Confidence 0112579999999999999987
No 228
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.36 E-value=0.0003 Score=71.35 Aligned_cols=49 Identities=22% Similarity=0.165 Sum_probs=34.6
Q ss_pred CCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 162 NKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
+.++|.+..+.++.+.+..-......|.|+|.+|+|||++|+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 3588999998888766643122224578999999999999999998654
No 229
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.35 E-value=0.0036 Score=62.72 Aligned_cols=157 Identities=16% Similarity=0.207 Sum_probs=82.7
Q ss_pred CCCCcccchHHHHHHHHhhcC--C--------CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccC
Q 041067 160 NKNKLVGVESKVEEIESILGV--E--------SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRS 229 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 229 (770)
.-++++|.+..+.++.++... . -.-.+-+.|+|.+|+||||||+.++..... ..+.+. ..+.....
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~-~~~~~~~~ 89 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEMF 89 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHHHSC
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CEEEee-HHHHHHHH
Confidence 345688888777776654421 0 011223899999999999999999987642 223332 11111100
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHC-CCcEEEEEeCCCChH------------h----HHHHHhcccCCCC--
Q 041067 230 GGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLS-RMKVLIVFDDVTCLS------------Q----LQSLIGSLYWLTP-- 290 (770)
Q Consensus 230 ~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~-~kr~LlVLDdv~~~~------------~----~~~l~~~~~~~~~-- 290 (770)
.+. .. .....+.+... ....++++|+++... . ...+...+..+..
T Consensus 90 ~~~--~~--------------~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~ 153 (254)
T 1ixz_A 90 VGV--GA--------------ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 153 (254)
T ss_dssp TTH--HH--------------HHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTC
T ss_pred hhH--HH--------------HHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCC
Confidence 000 00 11112222222 356899999984321 1 2233333322222
Q ss_pred CceEEEEcCchhhhhh-----cCcceEEEeCccChHHHHHHHHHhccCCCch
Q 041067 291 VSRIIITTRNKQVLRN-----WGVRKIYEMKALEYHHAIELFIMKYAQGVPL 337 (770)
Q Consensus 291 gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~glPL 337 (770)
...++.||...++... ......+.++..+.++-.+++. .++.+.|+
T Consensus 154 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~-~~~~~~~~ 204 (254)
T 1ixz_A 154 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILR-IHARGKPL 204 (254)
T ss_dssp CEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHH-HHHTTSCB
T ss_pred CEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHH-HHHcCCCC
Confidence 2344556666655322 1345688899888888888775 33445554
No 230
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.34 E-value=0.0002 Score=72.80 Aligned_cols=54 Identities=24% Similarity=0.246 Sum_probs=40.1
Q ss_pred CCCCCcccchHHHHHHHHhhcC----------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 159 DNKNKLVGVESKVEEIESILGV----------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
..-..++|.+..++++.+.+.. +....+-+.|+|.+|+|||++|+.+++.....
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 71 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP 71 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3445799999998888876641 11122347899999999999999999986543
No 231
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.24 E-value=0.00066 Score=79.81 Aligned_cols=146 Identities=21% Similarity=0.267 Sum_probs=83.0
Q ss_pred CCcccchHHHHHHHHhhcCCC-------CCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHH
Q 041067 162 NKLVGVESKVEEIESILGVES-------KDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSC 234 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 234 (770)
..++|.+..++.+...+.... .....+.++|.+|+|||++|+.+++.....-...+.+. .++..... ...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~-~~~- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKH-STS- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSC-CCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhccccc-ccc-
Confidence 468999999988877775211 12347999999999999999999998744333334443 44433322 111
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH--hHHHHHhcccC-----------CCCCceEEEEcCch
Q 041067 235 LQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS--QLQSLIGSLYW-----------LTPVSRIIITTRNK 301 (770)
Q Consensus 235 l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~-----------~~~gs~IivTTR~~ 301 (770)
.......+++ ...-+|+||+++... ....++..+.. .....+||+||...
T Consensus 568 --------------~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 568 --------------GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp -----------------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred --------------cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 0011111111 233488999997543 34444444322 11345888888731
Q ss_pred -----hh----hhh------cCcceEEEeCccChHHHHHHH
Q 041067 302 -----QV----LRN------WGVRKIYEMKALEYHHAIELF 327 (770)
Q Consensus 302 -----~v----~~~------~~~~~~~~l~~L~~~ea~~Lf 327 (770)
.+ ... ...+.++.+.+++.++-.+++
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~ 671 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIV 671 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHH
T ss_pred hhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHH
Confidence 11 111 122468889999998877766
No 232
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.21 E-value=0.0045 Score=63.04 Aligned_cols=158 Identities=15% Similarity=0.168 Sum_probs=82.9
Q ss_pred CCCCCcccchHHHHHHHHhhcC--C--------CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhcc
Q 041067 159 DNKNKLVGVESKVEEIESILGV--E--------SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQR 228 (770)
Q Consensus 159 ~~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 228 (770)
..-++++|.++.++++.++... . -.-.+-+.|+|.+|+||||||+.++..... ..+.+. .......
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~-~~~~~~~ 112 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEM 112 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHHHS
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEec-HHHHHHH
Confidence 3445789998887777665431 0 011123899999999999999999987642 223332 1111110
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcchHHHH-HHHHCCCcEEEEEeCCCCh------------H----hHHHHHhcccCCCC-
Q 041067 229 SGGLSCLQQKLLSNLLKHKNVMPFIDLI-FRRLSRMKVLIVFDDVTCL------------S----QLQSLIGSLYWLTP- 290 (770)
Q Consensus 229 ~~~~~~l~~~ll~~~~~~~~~~~~~~~l-~~~L~~kr~LlVLDdv~~~------------~----~~~~l~~~~~~~~~- 290 (770)
..+. .. .....+ ...-...+.++++|+++.. . ....+...+..+..
T Consensus 113 ~~~~--~~--------------~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 113 FVGV--GA--------------ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp TTTH--HH--------------HHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred HhhH--HH--------------HHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 0000 00 011111 1122245689999998421 1 12233333322222
Q ss_pred -CceEEEEcCchhhhhh-----cCcceEEEeCccChHHHHHHHHHhccCCCch
Q 041067 291 -VSRIIITTRNKQVLRN-----WGVRKIYEMKALEYHHAIELFIMKYAQGVPL 337 (770)
Q Consensus 291 -gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~glPL 337 (770)
...++.||...++... ......+.++..+.++-.+++. .++.+.|+
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~-~~~~~~~~ 228 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILR-IHARGKPL 228 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHH-HHHTTSCB
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHH-HHHccCCC
Confidence 2344456665544321 1335678898888888888775 23344443
No 233
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.20 E-value=0.032 Score=59.77 Aligned_cols=81 Identities=16% Similarity=0.232 Sum_probs=50.8
Q ss_pred cccCCCCCEEeccCCCCCCCCCc-ccCCCCCCcEEEeecCCCCcccC-cccCCCCCCcEEEccCCCCcccch-hhhCCCC
Q 041067 671 IERLHRLGYLDLLDCKRLKSLPR-SLWMLKSLGVLNLSGCSNLQRLP-ECLAQFSSPIILNLAKTNIERIPK-SISQLLM 747 (770)
Q Consensus 671 i~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~ 747 (770)
+..+++|+.+.+.. ....++. .+.++.+|+.+.|..+ +..+. .+|.++.+|+.+.|..+ ++.+.. ++.+|++
T Consensus 284 F~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 284 FMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred cccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence 33445555555542 1233443 3566778888888642 44443 36788888888888643 666653 5778888
Q ss_pred CcEEecccC
Q 041067 748 LRYLLLSYS 756 (770)
Q Consensus 748 L~~L~l~~c 756 (770)
|+.+++.++
T Consensus 359 L~~i~~~~~ 367 (394)
T 4gt6_A 359 LNNIEYSGS 367 (394)
T ss_dssp CCEEEESSC
T ss_pred CCEEEECCc
Confidence 888887643
No 234
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.18 E-value=0.0007 Score=70.03 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=37.7
Q ss_pred CCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 162 NKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
+.++|++..+.++.+.+..-......|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358999999999888775422233457899999999999999999864
No 235
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.18 E-value=0.011 Score=65.14 Aligned_cols=176 Identities=16% Similarity=0.162 Sum_probs=95.5
Q ss_pred CCCCcccchHHHHHHHHhhcC---C-------CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccC
Q 041067 160 NKNKLVGVESKVEEIESILGV---E-------SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRS 229 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 229 (770)
.-++++|.++.+.++.+.... . -.-.+-|.|+|.+|+||||||+.++..... ..+.+. ..+.....
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~---~~i~i~-g~~~~~~~ 104 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEMF 104 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC---CEEEEE-GGGGTSSC
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC---CEEEEe-hhHHHHhh
Confidence 345799999988887765431 1 011234899999999999999999987642 223332 22221111
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHC----CCcEEEEEeCCCCh------------H----hHHHHHhcccCCC
Q 041067 230 GGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLS----RMKVLIVFDDVTCL------------S----QLQSLIGSLYWLT 289 (770)
Q Consensus 230 ~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~----~kr~LlVLDdv~~~------------~----~~~~l~~~~~~~~ 289 (770)
.+. ....+...++ ..+.++++|+++.. + .+..++..+..+.
T Consensus 105 ~g~-------------------~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 105 VGV-------------------GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp TTH-------------------HHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred hhh-------------------HHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 011 1112222222 23479999998532 1 1234444433222
Q ss_pred --CCceEEEEcCchhhhhh-----cCcceEEEeCccChHHHHHHHHHhccCCCchh----HHHHhhHhcCCCHHHHHHHH
Q 041067 290 --PVSRIIITTRNKQVLRN-----WGVRKIYEMKALEYHHAIELFIMKYAQGVPLA----LKVLGCFLYEREKEVWESAI 358 (770)
Q Consensus 290 --~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~glPLa----l~~~g~~L~~~~~~~w~~~l 358 (770)
.+..|+.||...+++.. ...+..+.+...+.++-.+++. .++.+.|+. +..++....+....+.+.++
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~-~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv 244 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILR-IHARGKPLAEDVDLALLAKRTPGFVGADLENLL 244 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHH-HTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHH
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHH-HHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHH
Confidence 23455566766655321 1234688898888888888875 344555553 33444333333334444444
Q ss_pred H
Q 041067 359 D 359 (770)
Q Consensus 359 ~ 359 (770)
+
T Consensus 245 ~ 245 (499)
T 2dhr_A 245 N 245 (499)
T ss_dssp H
T ss_pred H
Confidence 3
No 236
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.18 E-value=0.053 Score=57.62 Aligned_cols=120 Identities=11% Similarity=0.134 Sum_probs=71.2
Q ss_pred CCCCCcEEEecCCCCCCccCCccc---cCccEEeccCcCccccCc-ccccCCCCCEEeccCCCCCCCCCc-ccCCCCCCc
Q 041067 628 NLEFLTKLNLSGCSKLKRLPEISS---GNISWLFLRETAIEELPS-SIERLHRLGYLDLLDCKRLKSLPR-SLWMLKSLG 702 (770)
Q Consensus 628 ~l~~L~~L~L~~~~~l~~lp~~~~---~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~ 702 (770)
...+|+.+.+..+ +..++.... ..|+.+.+..+ +..++. .+..+.+|+.+.+..+ ...++. .+.++++|+
T Consensus 215 ~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 215 YGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCC
T ss_pred cccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccc
Confidence 3445555555432 333333222 45666666543 444433 3556677887777543 334443 467788899
Q ss_pred EEEeecCCCCcccC-cccCCCCCCcEEEccCCCCcccch-hhhCCCCCcEEecc
Q 041067 703 VLNLSGCSNLQRLP-ECLAQFSSPIILNLAKTNIERIPK-SISQLLMLRYLLLS 754 (770)
Q Consensus 703 ~L~l~~~~~~~~lp-~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~ 754 (770)
.+.+.++. +..++ ..|.++.+|+.+.|..+ ++.+.. ++.+|++|+.+.+.
T Consensus 290 ~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 290 KVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccc-cceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 88887643 34443 46788889999988643 665553 46677777777663
No 237
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.15 E-value=0.0062 Score=65.43 Aligned_cols=17 Identities=12% Similarity=0.340 Sum_probs=10.8
Q ss_pred cccccCCCCCceEEEec
Q 041067 498 PSTFTKMPKLRFLKFYS 514 (770)
Q Consensus 498 ~~~~~~l~~Lr~L~l~~ 514 (770)
..+|.++++|+.+.+.+
T Consensus 155 ~~aF~~c~~L~~i~l~~ 171 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPD 171 (394)
T ss_dssp TTTTTTCTTCCEEECCT
T ss_pred hhhhcccCCCcEEecCC
Confidence 45667777777766643
No 238
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.13 E-value=0.00057 Score=70.80 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=34.8
Q ss_pred HHHHHHHHhhcCCCC-CeEEEEEEecCCCcHHHHHHHHHHHHh-CCCCceEEEE
Q 041067 169 SKVEEIESILGVESK-DVYSLGIWGIGGIGKTTIARAIFDKIS-GDFEGSCFLE 220 (770)
Q Consensus 169 ~~~~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~ 220 (770)
..++.+.+++..... ....+.|+|.+|+|||+||+++++... ..-..+.++.
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344445555543221 246788999999999999999999876 5433445554
No 239
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.07 E-value=0.015 Score=62.49 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=55.9
Q ss_pred cccCCCCCEEeccCCCCCCCCCc-ccCCCCCCcEEEeecCCCCcccC-cccCCCCCCcEEEccCCCCcccch-hhhCCCC
Q 041067 671 IERLHRLGYLDLLDCKRLKSLPR-SLWMLKSLGVLNLSGCSNLQRLP-ECLAQFSSPIILNLAKTNIERIPK-SISQLLM 747 (770)
Q Consensus 671 i~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~ 747 (770)
+..+.+|+.+.+.++ ...++. .+.++.+|+.++|..+ +..++ .+|.++.+|+.+.+..+ ++.+.. ++.+|++
T Consensus 293 F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred ccccccccccccccc--cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 456677777777653 334433 4677888998888642 45554 46888899999988765 776654 5778888
Q ss_pred CcEEeccc
Q 041067 748 LRYLLLSY 755 (770)
Q Consensus 748 L~~L~l~~ 755 (770)
|+.+++..
T Consensus 368 L~~i~lp~ 375 (394)
T 4fs7_A 368 LKKVELPK 375 (394)
T ss_dssp CCEEEEEG
T ss_pred CCEEEECC
Confidence 99888754
No 240
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.02 E-value=0.0048 Score=71.53 Aligned_cols=155 Identities=15% Similarity=0.210 Sum_probs=87.7
Q ss_pred CCcccchHHHHHHHHhhcC-----------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCC
Q 041067 162 NKLVGVESKVEEIESILGV-----------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSG 230 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 230 (770)
+++.|.++.+++|.+.+.. +-..++-|.++|++|+|||+||+++++....+ ++..+..+......
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~----~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKLA 279 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE----EEEEEHHHHHSSCT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe----EEEEEhHHhhcccc
Confidence 4688999999888876531 11236779999999999999999999875432 33332222211110
Q ss_pred C-HHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCChH-------------hHHHHHhcccCCCC--CceE
Q 041067 231 G-LSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCLS-------------QLQSLIGSLYWLTP--VSRI 294 (770)
Q Consensus 231 ~-~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~~~--gs~I 294 (770)
+ ..... ...+.+..+..+.+|++|+++..- ....++........ +-.|
T Consensus 280 gese~~l----------------r~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 280 GESESNL----------------RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp THHHHHH----------------HHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred hHHHHHH----------------HHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 1 11111 112222234678999999986421 12333333322222 2344
Q ss_pred EEEcCchhhh-hhc----CcceEEEeCccChHHHHHHHHHhccCCCch
Q 041067 295 IITTRNKQVL-RNW----GVRKIYEMKALEYHHAIELFIMKYAQGVPL 337 (770)
Q Consensus 295 ivTTR~~~v~-~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~glPL 337 (770)
|.||...+.. ..+ .-+..+++...+.++-.+++. .++.+.|+
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~-~~l~~~~~ 390 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ-IHTKNMKL 390 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHH-HTCSSSEE
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHH-HHhcCCCC
Confidence 5555544332 111 235788999989888888885 23344443
No 241
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.98 E-value=0.012 Score=59.64 Aligned_cols=147 Identities=16% Similarity=0.147 Sum_probs=79.5
Q ss_pred CCcccchHHHHHHHHhhcC-----------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCC
Q 041067 162 NKLVGVESKVEEIESILGV-----------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSG 230 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 230 (770)
.++.|.++.+++|.+.+.. +-.-.+-+.|+|++|.||||||+.++..... ..+.+. ..+.....
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~---~~i~i~-g~~l~~~~- 84 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL---NFISVK-GPELLNMY- 84 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC---EEEEEE-TTTTCSST-
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC---CEEEEE-cHHHHhhh-
Confidence 4577888777777664421 0011223999999999999999999987543 233333 22211111
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHH-HCCCcEEEEEeCCCChH-------------hHHHHHhcccCCC--CCceE
Q 041067 231 GLSCLQQKLLSNLLKHKNVMPFIDLIFRR-LSRMKVLIVFDDVTCLS-------------QLQSLIGSLYWLT--PVSRI 294 (770)
Q Consensus 231 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~~--~gs~I 294 (770)
.....+. +..+.+. -...+.++++|+++... ....+...+..+. ...-+
T Consensus 85 -~~~~~~~--------------i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ 149 (274)
T 2x8a_A 85 -VGESERA--------------VRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFI 149 (274)
T ss_dssp -THHHHHH--------------HHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEE
T ss_pred -hhHHHHH--------------HHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEE
Confidence 1111111 1111111 12457899999986521 1222333332211 23445
Q ss_pred EEEcCchhhhhh-----cCcceEEEeCccChHHHHHHHH
Q 041067 295 IITTRNKQVLRN-----WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 295 ivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
+.+|...++... ...+..+.+...+.++..+++.
T Consensus 150 ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~ 188 (274)
T 2x8a_A 150 MAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILK 188 (274)
T ss_dssp EEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHH
T ss_pred EeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHH
Confidence 567776655432 1346788898888888888886
No 242
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.93 E-value=0.0039 Score=64.00 Aligned_cols=28 Identities=36% Similarity=0.552 Sum_probs=24.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
.++.+.++|++|+|||+||+++++....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3567899999999999999999998743
No 243
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.80 E-value=0.017 Score=64.75 Aligned_cols=50 Identities=30% Similarity=0.357 Sum_probs=37.2
Q ss_pred CcccchHHHHHHHHhhcC----CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 163 KLVGVESKVEEIESILGV----ESKDVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 163 ~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
.++|.++..+.+.+.+.. .......+.++|.+|+||||||+.++......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 478888887777554431 11235589999999999999999999887443
No 244
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.80 E-value=0.00099 Score=67.00 Aligned_cols=67 Identities=18% Similarity=0.144 Sum_probs=54.0
Q ss_pred CCCCCCcEEEeecCCCCc--ccCcccCCCCCCcEEEccCCCCcccchhhhCCC--CCcEEecccCccCCcCC
Q 041067 696 WMLKSLGVLNLSGCSNLQ--RLPECLAQFSSPIILNLAKTNIERIPKSISQLL--MLRYLLLSYSESLQSSP 763 (770)
Q Consensus 696 ~~l~~L~~L~l~~~~~~~--~lp~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~--~L~~L~l~~c~~L~~lP 763 (770)
.++++|++|+|++|...+ .+|..++.+++|+.|+|++|.++.+. .+..+. +|+.|++++|+--..+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 467899999999988765 66777889999999999999999763 345555 99999999999444444
No 245
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.68 E-value=0.0039 Score=73.30 Aligned_cols=149 Identities=13% Similarity=0.197 Sum_probs=82.1
Q ss_pred CCCcccchHHHHHHHHhhcC-----------CCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccC
Q 041067 161 KNKLVGVESKVEEIESILGV-----------ESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRS 229 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 229 (770)
-+.++|.+..++++.+++.. .-.....|.|+|.+|+||||||+.++......| +.+. ..+.....
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~-~~~l~~~~ 278 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSKL 278 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEE-HHHHSSSS
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEE-chHhhhhh
Confidence 35699999999998887752 123345799999999999999999988754332 2222 22211111
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEEEEEeCCCCh---------H----hHHHHHhcccCC--CCCceE
Q 041067 230 GGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVLIVFDDVTCL---------S----QLQSLIGSLYWL--TPVSRI 294 (770)
Q Consensus 230 ~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---------~----~~~~l~~~~~~~--~~gs~I 294 (770)
...... .....+.........++++|+++.. + ....+...+... ..+..+
T Consensus 279 --~g~~~~-------------~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~v 343 (806)
T 1ypw_A 279 --AGESES-------------NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp --TTHHHH-------------HHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEE
T ss_pred --hhhHHH-------------HHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEE
Confidence 000000 0111122222345789999998421 1 122232222211 123455
Q ss_pred EEEcCchhhhh-hc----CcceEEEeCccChHHHHHHHH
Q 041067 295 IITTRNKQVLR-NW----GVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 295 ivTTR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
|.||...+-.. .. .....+.+...+.++..+++.
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~ 382 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHH
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHH
Confidence 55665543221 11 224567888888888888885
No 246
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.61 E-value=0.0044 Score=68.02 Aligned_cols=52 Identities=27% Similarity=0.293 Sum_probs=39.9
Q ss_pred CCCcccchHHHHHHHHhhc---CCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 161 KNKLVGVESKVEEIESILG---VESKDVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 161 ~~~~vGr~~~~~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
.+.++|.++.++.+..++. .+....+-+.++|++|+|||++|+.+++.....
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~ 90 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK 90 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC
Confidence 3679999999887655443 333334568899999999999999999987644
No 247
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.53 E-value=0.083 Score=56.51 Aligned_cols=121 Identities=12% Similarity=0.164 Sum_probs=76.7
Q ss_pred CCCCCCCcEEEecCCCCCCccCCccc---cCccEEeccCcCccccCcc-cccCCCCCEEeccCCCCCCCCC-cccCCCCC
Q 041067 626 IFNLEFLTKLNLSGCSKLKRLPEISS---GNISWLFLRETAIEELPSS-IERLHRLGYLDLLDCKRLKSLP-RSLWMLKS 700 (770)
Q Consensus 626 i~~l~~L~~L~L~~~~~l~~lp~~~~---~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~ 700 (770)
+..+.+|+.+.+... ...++.... .+|+.+.+. +.+..++.. +..+++|+.+.+..+ ...+. ..+.++.+
T Consensus 261 F~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTT
T ss_pred eeecccccEEecccc--cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCC
Confidence 445677788777542 334443322 678888875 456666654 677899999999763 34454 35788999
Q ss_pred CcEEEeecCCCCcccC-cccCCCCCCcEEEccCCCCcccchhhhCCCCCcEEeccc
Q 041067 701 LGVLNLSGCSNLQRLP-ECLAQFSSPIILNLAKTNIERIPKSISQLLMLRYLLLSY 755 (770)
Q Consensus 701 L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~ 755 (770)
|+.+.|..+ +..+. ..|.++++|+.+.+.++... . ..+..+.+|+.+.+..
T Consensus 336 L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 336 LERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAP 387 (394)
T ss_dssp CCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC-------
T ss_pred CCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEeCC
Confidence 999999753 45554 47899999999999886432 1 2344556666666544
No 248
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.51 E-value=0.015 Score=68.26 Aligned_cols=48 Identities=21% Similarity=0.316 Sum_probs=38.1
Q ss_pred CCcccchHHHHHHHHhhcCC-------CCCeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 162 NKLVGVESKVEEIESILGVE-------SKDVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
..++|.+..++.+...+... ......+.++|.+|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 46889999998887766421 1124579999999999999999999887
No 249
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.49 E-value=0.064 Score=57.65 Aligned_cols=36 Identities=22% Similarity=0.095 Sum_probs=28.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEE
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFL 219 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 219 (770)
...+|.++|.+|+||||++..++..++.+-..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv 134 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVV 134 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 378999999999999999999998776543333333
No 250
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.46 E-value=0.0094 Score=58.00 Aligned_cols=33 Identities=18% Similarity=0.053 Sum_probs=26.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
-.++.|+|.+|+||||||+.++. ..-..++|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 34899999999999999999988 2234566765
No 251
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.31 E-value=0.013 Score=54.55 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
.+|+|.|++|+||||+|+.+ .+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 37899999999999999999 44
No 252
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.31 E-value=0.013 Score=55.50 Aligned_cols=115 Identities=20% Similarity=0.175 Sum_probs=61.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHH--------hcCCC---C----
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNL--------LKHKN---V---- 249 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~--------~~~~~---~---- 249 (770)
...|-|++-.|.||||.|-...-+...+=-.+.++.-... .... +-..+.+.+--.+ ....+ .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg-~~~~-gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKG-TWPN-GERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCC-SSCC-HHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC-CCCc-cHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 3467778888899999999999885554334444431111 0111 2222332220000 00000 0
Q ss_pred cchHHHHHHHHCCCcE-EEEEeCCCCh-----HhHHHHHhcccCCCCCceEEEEcCch
Q 041067 250 MPFIDLIFRRLSRMKV-LIVFDDVTCL-----SQLQSLIGSLYWLTPVSRIIITTRNK 301 (770)
Q Consensus 250 ~~~~~~l~~~L~~kr~-LlVLDdv~~~-----~~~~~l~~~~~~~~~gs~IivTTR~~ 301 (770)
.......++.+.+.+| |||||++... -..+.+...+..-.....||||+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 0334556666666555 9999998432 12344444444335667899999986
No 253
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.17 E-value=0.0033 Score=64.27 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
-+++.|+|++|+||||||.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 356789999999999999999876
No 254
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.94 E-value=0.0039 Score=65.37 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=38.9
Q ss_pred CCcccchHHHHHHHHhhcCC---CCCeEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 162 NKLVGVESKVEEIESILGVE---SKDVYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
..++|.+..++.+...+..+ ......+.++|++|+||||||+.++.....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT 77 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 45789888888887766432 223457999999999999999999998753
No 255
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.92 E-value=0.0058 Score=64.26 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=67.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceE-EEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCc
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSC-FLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMK 264 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr 264 (770)
.+++|+|..|.||||+.+.+...+.......+ .+.+..+..... .. ....+.............+...|...+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~-~~-----~~v~q~~~~~~~~~~~~~La~aL~~~P 197 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHES-KK-----CLVNQREVHRDTLGFSEALRSALREDP 197 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCC-SS-----SEEEEEEBTTTBSCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhc-cc-----cceeeeeeccccCCHHHHHHHHhhhCc
Confidence 48999999999999999999887654433333 332211110000 00 000000001112244567888888888
Q ss_pred EEEEEeCCCChHhHHHHHhcccCCCCCceEEEEcCchhhh
Q 041067 265 VLIVFDDVTCLSQLQSLIGSLYWLTPVSRIIITTRNKQVL 304 (770)
Q Consensus 265 ~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~ 304 (770)
=+|++|.+.+.+.++.+.... ..|..||+||...+.+
T Consensus 198 dvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 198 DIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred CEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 899999999887776655543 3466689998887655
No 256
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.88 E-value=0.019 Score=59.43 Aligned_cols=36 Identities=17% Similarity=0.077 Sum_probs=27.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEE
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFL 219 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 219 (770)
...+|+|+|.+|+||||++..++..+...-..+.++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 467999999999999999999998776542333333
No 257
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.87 E-value=0.015 Score=69.20 Aligned_cols=49 Identities=18% Similarity=0.388 Sum_probs=38.5
Q ss_pred CcccchHHHHHHHHhhcCC------C-CCeEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 163 KLVGVESKVEEIESILGVE------S-KDVYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 163 ~~vGr~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
.++|.+..++.+...+... . .....+.|+|.+|+|||++|+.+++....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4799999988887776421 1 12368999999999999999999988643
No 258
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.86 E-value=0.0053 Score=64.24 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=37.9
Q ss_pred CcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 163 KLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 163 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
.++|++..++.+...+..+. .+.++|.+|+|||++|+.+++....
T Consensus 28 ~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred ceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHHHhCC
Confidence 58999999998888776443 5889999999999999999987644
No 259
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.70 E-value=0.018 Score=55.34 Aligned_cols=44 Identities=20% Similarity=0.310 Sum_probs=33.5
Q ss_pred chHHHHHHHHhhcCC-CCCeEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 167 VESKVEEIESILGVE-SKDVYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 167 r~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
|++.++++.+.+... .....+|+|.|..|.||||+++.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455666666665432 33467999999999999999999998764
No 260
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.66 E-value=0.0083 Score=63.67 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=35.9
Q ss_pred cccchHHHHHHHHhhc-------------CCCCCeEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 164 LVGVESKVEEIESILG-------------VESKDVYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 164 ~vGr~~~~~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
++|.+..++.+...+. ........|.++|.+|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 6788888888777662 1111245689999999999999999998763
No 261
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.61 E-value=0.012 Score=56.82 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 170 KVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 170 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
-+++|.+.+......-.+|+|+|..|.|||||++.+...+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 33444444433234467999999999999999999998765
No 262
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.57 E-value=0.0055 Score=57.53 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=22.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.+|.|.|++|+||||+|+.+.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998754
No 263
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.53 E-value=0.006 Score=63.73 Aligned_cols=26 Identities=23% Similarity=0.046 Sum_probs=22.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
..++|+|.+|+|||||++.+.+.+..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhh
Confidence 37999999999999999999887644
No 264
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.53 E-value=0.084 Score=54.69 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=25.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
...+++|+|..|+||||+++.++..+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46799999999999999999999876543
No 265
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.52 E-value=0.0037 Score=59.20 Aligned_cols=25 Identities=24% Similarity=-0.033 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.++.|+|..|+||||+|..++.+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999977776653
No 266
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.51 E-value=0.029 Score=57.35 Aligned_cols=36 Identities=22% Similarity=0.163 Sum_probs=28.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
..+++++|.+|+||||++..++......-..+.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 678999999999999999999987655433344443
No 267
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.50 E-value=0.0088 Score=56.81 Aligned_cols=81 Identities=22% Similarity=0.189 Sum_probs=35.8
Q ss_pred CCCCCcEEEecCCCCCCc-----cCCccc--cCccEEeccCcCcc-----ccCcccccCCCCCEEeccCCCCCC----CC
Q 041067 628 NLEFLTKLNLSGCSKLKR-----LPEISS--GNISWLFLRETAIE-----ELPSSIERLHRLGYLDLLDCKRLK----SL 691 (770)
Q Consensus 628 ~l~~L~~L~L~~~~~l~~-----lp~~~~--~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~----~l 691 (770)
+-++|++|+|++|..+.. +-+... ..|+.|+|++|.+. .+...+..-+.|++|+|++|.+.. .+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 445678888876522221 111111 34555555555544 222333344455555555544321 12
Q ss_pred CcccCCCCCCcEEEeec
Q 041067 692 PRSLWMLKSLGVLNLSG 708 (770)
Q Consensus 692 p~~l~~l~~L~~L~l~~ 708 (770)
-..+...++|++|+|++
T Consensus 119 a~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHTTTTCCCSEEECCC
T ss_pred HHHHhhCCceeEEECCC
Confidence 22333444455555543
No 268
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.49 E-value=0.038 Score=55.33 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=62.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCc
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMK 264 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr 264 (770)
-.+++|+|..|.||||+++.+...+...+...+++....-..... .... +..+..-..+.......+.+.|...+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~-~~~~----~v~q~~~gl~~~~l~~~la~aL~~~p 99 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFK-HKKS----IVNQREVGEDTKSFADALRAALREDP 99 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCC-CSSS----EEEEEEBTTTBSCHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecC-Ccce----eeeHHHhCCCHHHHHHHHHHHHhhCC
Confidence 358999999999999999999887654434555543211000000 0000 00000000011133455666665566
Q ss_pred EEEEEeCCCChHhHHHHHhcccCCCCCceEEEEcCchhhh
Q 041067 265 VLIVFDDVTCLSQLQSLIGSLYWLTPVSRIIITTRNKQVL 304 (770)
Q Consensus 265 ~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~ 304 (770)
=+|++|...+.+....+.... ..|.-|++||.+.++.
T Consensus 100 ~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 100 DVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp SEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred CEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 688899998766555444332 3466788888876543
No 269
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.44 E-value=0.0071 Score=56.29 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=22.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.+|+|.|+.|+||||+|+.+..+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999998764
No 270
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.36 E-value=0.018 Score=58.64 Aligned_cols=31 Identities=19% Similarity=0.196 Sum_probs=26.0
Q ss_pred CCCCeEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 181 ESKDVYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 181 ~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
......+|+|+|..|+||||||+.+...+..
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3445789999999999999999999887643
No 271
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.33 E-value=0.014 Score=56.72 Aligned_cols=107 Identities=12% Similarity=-0.058 Sum_probs=56.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCC--c----chHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNV--M----PFIDLIFR 258 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~--~----~~~~~l~~ 258 (770)
-.++.|+|..|.||||+|..+..+...+-..+.++.-..+.. .. .++.+.+.-.... . +..+.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~~-------~~i~srlG~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-SI-------RNIQSRTGTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-GC-------SSCCCCCCCSSCCEEESSTHHHHHHHHS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-HH-------HHHHHhcCCCccccccCCHHHHHHHHHH
Confidence 358889999999999999999988765544444443111110 10 0111111110010 0 22222333
Q ss_pred HHCCCc-EEEEEeCCCC--hHhHHHHHhcccCCCCCceEEEEcCchh
Q 041067 259 RLSRMK-VLIVFDDVTC--LSQLQSLIGSLYWLTPVSRIIITTRNKQ 302 (770)
Q Consensus 259 ~L~~kr-~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IivTTR~~~ 302 (770)
.+.+.+ -+||+|.+.. .++++.+..... .|-.||+|-++.+
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDKN 127 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSBC
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEecccc
Confidence 333334 4999999864 234444433221 2778999998554
No 272
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.25 E-value=0.0092 Score=57.25 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
..+|.|+|++|+||||+|+.++...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999876
No 273
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.20 E-value=0.037 Score=59.71 Aligned_cols=33 Identities=27% Similarity=0.590 Sum_probs=25.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhCCCC-ceEEE
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISGDFE-GSCFL 219 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~ 219 (770)
.++|+|.+|+||||||..+......++. .+++.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~ 186 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFA 186 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcEEEEe
Confidence 5899999999999999999987655443 33443
No 274
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.19 E-value=0.0095 Score=56.28 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=22.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
+.|.|+|++|+||||+|+.++.+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999876
No 275
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.08 E-value=0.015 Score=60.28 Aligned_cols=49 Identities=22% Similarity=0.366 Sum_probs=33.7
Q ss_pred ccchHHHHHHHHhhc--CCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC
Q 041067 165 VGVESKVEEIESILG--VESKDVYSLGIWGIGGIGKTTIARAIFDKISGDF 213 (770)
Q Consensus 165 vGr~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 213 (770)
|+.+.-.+++.+.+. ...+....|.|+|++|+||||+|+.++..+...|
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 344445555555543 1334566799999999999999999998755433
No 276
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.00 E-value=0.044 Score=52.69 Aligned_cols=88 Identities=20% Similarity=0.231 Sum_probs=46.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEe---cchhhccCCCHHHHHHHHHHHHhcCC--CCcchHHHHHHHHC
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLEN---VREESQRSGGLSCLQQKLLSNLLKHK--NVMPFIDLIFRRLS 261 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~---~~~~~~~~~~~~~l~~~ll~~~~~~~--~~~~~~~~l~~~L~ 261 (770)
+|.|.|++|+||||.|+.++.++. ...++. +++.......+....+.+ +.... ++.-....+.+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----~~~istGdllR~~i~~~t~lg~~~~~~---~~~G~lvpd~iv~~lv~~~l~ 73 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----FVHISTGDILREAVQKGTPLGKKAKEY---MERGELVPDDLIIALIEEVFP 73 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----CEEEEHHHHHHHHHHHTCHHHHHHHHH---HHHTCCCCHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----CeEEcHHHHHHHHHHhcChhhhhHHHH---HhcCCcCCHHHHHHHHHHhhc
Confidence 578899999999999999998752 223331 011111110111111111 11111 12244567777876
Q ss_pred CCcEEEEEeCC-CChHhHHHHHh
Q 041067 262 RMKVLIVFDDV-TCLSQLQSLIG 283 (770)
Q Consensus 262 ~kr~LlVLDdv-~~~~~~~~l~~ 283 (770)
.... +|||.. .+..|.+.+..
T Consensus 74 ~~~~-~ilDGfPRt~~Qa~~l~~ 95 (206)
T 3sr0_A 74 KHGN-VIFDGFPRTVKQAEALDE 95 (206)
T ss_dssp SSSC-EEEESCCCSHHHHHHHHH
T ss_pred cCCc-eEecCCchhHHHHHHHHh
Confidence 5543 689998 44556555543
No 277
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.94 E-value=0.025 Score=53.55 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
..|.|.|++|+||||+|+.+..++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999998764
No 278
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.94 E-value=1.1 Score=47.30 Aligned_cols=100 Identities=9% Similarity=0.159 Sum_probs=55.1
Q ss_pred CCCCCCCcEEEecCCCCCCccCCccc---cCccEEeccCcCccccCc-ccccCCCCCEEeccCCCCCCCCC-cccCCCCC
Q 041067 626 IFNLEFLTKLNLSGCSKLKRLPEISS---GNISWLFLRETAIEELPS-SIERLHRLGYLDLLDCKRLKSLP-RSLWMLKS 700 (770)
Q Consensus 626 i~~l~~L~~L~L~~~~~l~~lp~~~~---~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~ 700 (770)
+..+.+|+.+.+..+ ++.++.... .+|+.+.+.. .+..++. .+..+++|+.+.+.++. ...++ ..+.++.+
T Consensus 236 f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 236 FYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVK 311 (379)
T ss_dssp TTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTT
T ss_pred ccCCccceEEEcCCC--ccEeCccccceeehhccccccc-cceeccccccccccccccccccccc-cceehhhhhcCCCC
Confidence 345566777766542 444444322 4566666643 2444443 35566777777776543 23333 34666777
Q ss_pred CcEEEeecCCCCcccCc-ccCCCCCCcEEEcc
Q 041067 701 LGVLNLSGCSNLQRLPE-CLAQFSSPIILNLA 731 (770)
Q Consensus 701 L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~L~ 731 (770)
|+.+.|..+ +..+.. +|.++++|+.+.+.
T Consensus 312 L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 312 LSSVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred CCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 777777532 344433 56666667666654
No 279
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.88 E-value=0.059 Score=58.14 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=25.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
..++|.++|.||+||||+|..++..+..+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 47899999999999999999999887654
No 280
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.87 E-value=0.018 Score=61.36 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
...+.++|.+|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999998763
No 281
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.87 E-value=0.03 Score=58.55 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=35.4
Q ss_pred HHHHHhhc-CCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 172 EEIESILG-VESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 172 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
..|...|. .+-..-.++.|+|.+|+||||||..++......=..++|++
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 44555664 22233468999999999999999999987654434567776
No 282
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.85 E-value=0.015 Score=54.46 Aligned_cols=23 Identities=35% Similarity=0.361 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~ 25 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh
Confidence 47899999999999999999873
No 283
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.84 E-value=0.024 Score=54.25 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=24.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
...+|+|+|+.|.||||+|+.+.....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998875
No 284
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.79 E-value=0.016 Score=63.87 Aligned_cols=44 Identities=20% Similarity=0.074 Sum_probs=37.2
Q ss_pred CcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 163 KLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 163 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.++|.+..++.+...+..+. .|.|+|.+|+|||+||+.+++...
T Consensus 23 ~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHHHh
Confidence 48999999998887775443 589999999999999999998653
No 285
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.77 E-value=0.023 Score=56.41 Aligned_cols=41 Identities=20% Similarity=0.100 Sum_probs=29.5
Q ss_pred HHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 169 SKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 169 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
..+.++...+.........|+|.|++|+||||+|+.+.+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444444433333456789999999999999999998865
No 286
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.75 E-value=0.016 Score=54.88 Aligned_cols=24 Identities=38% Similarity=0.332 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
-.+++|+|+.|.||||+++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 358999999999999999999864
No 287
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.74 E-value=0.016 Score=53.80 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=22.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
..+|+|.|+.|+||||+|+.+..+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998764
No 288
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.68 E-value=0.029 Score=52.98 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=24.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
..+|.|.|++|+||||+|+.++.....
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999988654
No 289
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.65 E-value=0.024 Score=53.76 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 290
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.64 E-value=0.015 Score=54.14 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.+|+|+|+.|+||||+|+.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3699999999999999999998753
No 291
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.63 E-value=0.028 Score=51.99 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=27.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCC-CCceEE
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGD-FEGSCF 218 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~ 218 (770)
..++++|.|..|+|||||+..+...+..+ +....+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~i 38 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTV 38 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEE
Confidence 35689999999999999999999887654 444443
No 292
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.63 E-value=0.013 Score=55.18 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
.+.|.|.|++|+||||+|+.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999999875
No 293
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.59 E-value=0.011 Score=55.90 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=23.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCC
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFE 214 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 214 (770)
|.|.|+|++|+|||||++++..+....|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 45889999999999999999887554443
No 294
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.53 E-value=0.017 Score=55.31 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=22.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.|+|.|+.|+||||+|+.+...+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998765
No 295
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.52 E-value=0.074 Score=57.22 Aligned_cols=51 Identities=22% Similarity=0.398 Sum_probs=34.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhC-CCCceEEEEecchhhccCCCHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISG-DFEGSCFLENVREESQRSGGLSCLQQKLLS 241 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 241 (770)
.++|.|.+|+|||+|+..+.+.+.. +-+.++|+- +.+-.. .+..+.+++..
T Consensus 155 r~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~-iGER~r---Ev~e~~~~~~~ 206 (482)
T 2ck3_D 155 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG-VGERTR---EGNDLYHEMIE 206 (482)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEE-ESCCHH---HHHHHHHHHHH
T ss_pred eeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEE-CCCcch---HHHHHHHHhhh
Confidence 6899999999999999999998643 345555543 443322 44555555544
No 296
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.50 E-value=0.021 Score=54.00 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=23.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
..|.|.|++|+||||+|+.+..+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999998754
No 297
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.48 E-value=0.12 Score=54.57 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=62.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceE-EEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCC
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSC-FLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRM 263 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~k 263 (770)
-.+++|+|..|.||||+++.+...+.......+ ++.+..+. ....... +..+..-..+.......+...|...
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~-~~~~~~~-----~v~Q~~~g~~~~~~~~~l~~~L~~~ 209 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY-VFKHKKS-----IVNQREVGEDTKSFADALRAALRED 209 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS-CCCCSSS-----EEEEEEBTTTBSCSHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh-hhccCce-----EEEeeecCCCHHHHHHHHHHHhhhC
Confidence 458999999999999999999987654433444 33311110 0000000 0000000001123455677777777
Q ss_pred cEEEEEeCCCChHhHHHHHhcccCCCCCceEEEEcCchhh
Q 041067 264 KVLIVFDDVTCLSQLQSLIGSLYWLTPVSRIIITTRNKQV 303 (770)
Q Consensus 264 r~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v 303 (770)
+=+|++|.+.+.+.+..++... ..|..|+.|+...++
T Consensus 210 pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 210 PDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 246 (372)
T ss_dssp CSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSH
T ss_pred cCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchH
Confidence 7789999998777655544432 346668888776553
No 298
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.47 E-value=0.089 Score=56.52 Aligned_cols=36 Identities=19% Similarity=0.094 Sum_probs=27.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEE
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFL 219 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 219 (770)
..++|.++|.+|+||||++..++..++.+=..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 368999999999999999999998766543333333
No 299
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.47 E-value=0.021 Score=57.08 Aligned_cols=25 Identities=28% Similarity=0.228 Sum_probs=22.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.+|.|.|++|+||||||+.++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998753
No 300
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.45 E-value=0.02 Score=53.88 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=22.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
++++|+|+.|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999988654
No 301
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.45 E-value=0.028 Score=52.43 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=22.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
-.+|+|+|+.|.||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998865
No 302
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.44 E-value=0.021 Score=59.95 Aligned_cols=49 Identities=20% Similarity=0.196 Sum_probs=35.3
Q ss_pred CCCCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 160 NKNKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.-+.++|.+..+..+........ ..-|.|+|.+|+|||++|+.+++...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHhCc
Confidence 33468999987666544433222 22389999999999999999998754
No 303
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.44 E-value=0.018 Score=55.33 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999876
No 304
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.43 E-value=0.03 Score=53.59 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=22.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
..+|+|.|+.|.||||+|+.+....
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999999876
No 305
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.40 E-value=0.019 Score=53.66 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.|.|.|++|+||||+|+.++.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 306
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.31 E-value=0.075 Score=54.08 Aligned_cols=34 Identities=12% Similarity=-0.002 Sum_probs=27.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhCC--CCceEEEE
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISGD--FEGSCFLE 220 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~ 220 (770)
++-|+|.+|+||||||.+++...... =..++|++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 68999999999999999998876544 24567876
No 307
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.30 E-value=0.029 Score=53.72 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=23.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 183 KDVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
....+|+|.|+.|+||||+|+.+++..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999999864
No 308
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.26 E-value=0.093 Score=56.70 Aligned_cols=84 Identities=20% Similarity=0.235 Sum_probs=51.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhC-CCCceEEEEecchhhccCCCHHHHHHHHHHHHhcC-------C--------CCc
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISG-DFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKH-------K--------NVM 250 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~-------~--------~~~ 250 (770)
.++|.|.+|+|||+|+..+.+.+.. +-+.++|+- +.+-.. .+..+.+++...=..+ . +..
T Consensus 167 r~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~-iGER~r---Ev~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p 242 (498)
T 1fx0_B 167 KIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG-VGERTR---EGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 242 (498)
T ss_dssp CEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE-ESCCSH---HHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSC
T ss_pred eEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE-cccCcH---HHHHHHHhhhcccccccccccccceEEEEeCCCCC
Confidence 5899999999999999999998643 446666654 443322 4455555554321000 0 111
Q ss_pred --------chHHHHHHHHC---CCcEEEEEeCCCC
Q 041067 251 --------PFIDLIFRRLS---RMKVLIVFDDVTC 274 (770)
Q Consensus 251 --------~~~~~l~~~L~---~kr~LlVLDdv~~ 274 (770)
...-.+-++++ ++.+|+++||+..
T Consensus 243 ~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 243 PGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp HHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 11223455664 5789999999854
No 309
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.23 E-value=0.038 Score=59.46 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=36.0
Q ss_pred CcccchHHHHHHHHhhcC---------C---CCCeEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 163 KLVGVESKVEEIESILGV---------E---SKDVYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 163 ~~vGr~~~~~~l~~~L~~---------~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
.++|.++.++.+...+.. + ....+-|.++|++|+||||+|+.++.....
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 478888877777655521 0 112456899999999999999999988643
No 310
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.22 E-value=0.028 Score=53.29 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
..+|+|.|++|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998875
No 311
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.22 E-value=0.024 Score=53.95 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=22.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999875
No 312
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.20 E-value=0.03 Score=53.57 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=23.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHH
Q 041067 183 KDVYSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
....+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999875
No 313
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.20 E-value=0.045 Score=52.65 Aligned_cols=28 Identities=29% Similarity=0.264 Sum_probs=24.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCC
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDF 213 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 213 (770)
..|.|.|+.|+||||+|+.+..++....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 5799999999999999999999876543
No 314
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.17 E-value=0.026 Score=53.22 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
...|+|+|+.|+||||+|+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999986
No 315
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.12 E-value=0.028 Score=51.98 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 316
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.11 E-value=0.16 Score=53.15 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=33.1
Q ss_pred HHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhC------CCCceEEEE
Q 041067 174 IESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISG------DFEGSCFLE 220 (770)
Q Consensus 174 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~ 220 (770)
|..+|..+-..-.++.|+|.+|+||||||..++..... .-..++|++
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 44445323334568999999999999999999987432 234667776
No 317
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.11 E-value=0.026 Score=53.18 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
+|+|.|++|+||||+|+.+..+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998753
No 318
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.11 E-value=0.013 Score=61.03 Aligned_cols=26 Identities=31% Similarity=0.174 Sum_probs=22.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
..++|+|.+|+|||+|+..+.+.+..
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHHHhh
Confidence 36899999999999999999987653
No 319
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.11 E-value=0.07 Score=55.47 Aligned_cols=104 Identities=16% Similarity=0.096 Sum_probs=60.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCCCcEE
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSRMKVL 266 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~kr~L 266 (770)
.++|+|..|.|||||++.+...+.. -...+.+.+..+..... .. +.+ .+... ........+...|...+=+
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~~--~~---~~i--~~~~g-gg~~~r~~la~aL~~~p~i 243 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFKH--HK---NYT--QLFFG-GNITSADCLKSCLRMRPDR 243 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCSS--CS---SEE--EEECB-TTBCHHHHHHHHTTSCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeecccccc--ch---hEE--EEEeC-CChhHHHHHHHHhhhCCCE
Confidence 6999999999999999999876543 34566665433211100 00 000 00000 2234455677777778888
Q ss_pred EEEeCCCChHhHHHHHhcccCCCCCc-eEEEEcCchhh
Q 041067 267 IVFDDVTCLSQLQSLIGSLYWLTPVS-RIIITTRNKQV 303 (770)
Q Consensus 267 lVLDdv~~~~~~~~l~~~~~~~~~gs-~IivTTR~~~v 303 (770)
+++|.+...+.++.+. ... .|. -+|+||...+.
T Consensus 244 lildE~~~~e~~~~l~-~~~---~g~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 244 IILGELRSSEAYDFYN-VLC---SGHKGTLTTLHAGSS 277 (330)
T ss_dssp EEECCCCSTHHHHHHH-HHH---TTCCCEEEEEECSSH
T ss_pred EEEcCCChHHHHHHHH-HHh---cCCCEEEEEEcccHH
Confidence 9999998866555443 332 232 36777766543
No 320
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.11 E-value=0.083 Score=55.62 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=31.0
Q ss_pred HHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 171 VEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 171 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
..++...+........+|+|+|.+|+|||||+..+.......
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 334444444344567899999999999999999998876543
No 321
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.06 E-value=0.019 Score=53.89 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=18.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
..+|.|.|+.|+||||+|+.+..+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34799999999999999999988754
No 322
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.05 E-value=0.028 Score=52.91 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
..|+|.|+.|+||||+|+.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999875
No 323
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.05 E-value=0.032 Score=53.20 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=22.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.+|+|.|++|+||||+|+.+..+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998764
No 324
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.05 E-value=0.02 Score=53.18 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
+|.|.|+.|+||||+|+.+..+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998763
No 325
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.04 E-value=0.03 Score=53.10 Aligned_cols=106 Identities=13% Similarity=0.066 Sum_probs=78.4
Q ss_pred cCccEEeccCc-Ccc-----ccCcccccCCCCCEEeccCCCCCC----CCCcccCCCCCCcEEEeecCCCCc----ccCc
Q 041067 652 GNISWLFLRET-AIE-----ELPSSIERLHRLGYLDLLDCKRLK----SLPRSLWMLKSLGVLNLSGCSNLQ----RLPE 717 (770)
Q Consensus 652 ~~L~~L~l~~~-~i~-----~lp~~i~~l~~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~l~~~~~~~----~lp~ 717 (770)
..|++|+|+++ .+. .+-..+..-+.|+.|+|++|.... .+...+...++|++|+|++|.... .+.+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 47999999985 665 355567777899999999998642 344556677899999999987653 3445
Q ss_pred ccCCCCCCcEEEccCC---CCc-----ccchhhhCCCCCcEEecccCc
Q 041067 718 CLAQFSSPIILNLAKT---NIE-----RIPKSISQLLMLRYLLLSYSE 757 (770)
Q Consensus 718 ~l~~l~~L~~L~L~~~---~l~-----~lp~~l~~l~~L~~L~l~~c~ 757 (770)
.+..-+.|+.|+|++| .+. .+...+..-+.|..|+++.|.
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 6666778999999865 334 355667777889999998664
No 326
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.03 E-value=0.02 Score=54.21 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=24.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCC
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFE 214 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 214 (770)
++++|.|+.|+|||||++.+.......|.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 47899999999999999999987654443
No 327
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.03 E-value=0.029 Score=53.06 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=24.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
.+++|+|+.|.||||+++.+... ....+++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~----~~g~~~i~ 33 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ----LDNSAYIE 33 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH----SSSEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHhcc----cCCeEEEc
Confidence 47899999999999999999863 33445554
No 328
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.03 E-value=0.045 Score=56.41 Aligned_cols=48 Identities=23% Similarity=0.273 Sum_probs=33.3
Q ss_pred cccchHHHHHHHHhhcCC--CCCeEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 164 LVGVESKVEEIESILGVE--SKDVYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 164 ~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
++|-...+..+...+... .....+|+|.|..|+||||+|+.+...+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 344444555544433322 345779999999999999999999877653
No 329
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.03 E-value=0.028 Score=53.88 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFD 207 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~ 207 (770)
+|+|.|+.|+||||+|+.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999987
No 330
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.02 E-value=0.022 Score=54.72 Aligned_cols=26 Identities=23% Similarity=0.526 Sum_probs=22.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
..+|+|+|++|+||||+++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45799999999999999999988763
No 331
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.94 E-value=0.044 Score=52.02 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=32.0
Q ss_pred chHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 167 VESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 167 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
...-+..+..++.. -.....+.|+|++|+||||+|.++++.+.+
T Consensus 41 ~~~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 41 FITFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33445666666643 222346999999999999999999998754
No 332
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.93 E-value=0.035 Score=52.51 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=23.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
..+|+|.|+.|+||||+|+.+.....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998753
No 333
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.91 E-value=0.034 Score=55.79 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=23.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
..+|.|.|++|+||||+|+.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999998754
No 334
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.90 E-value=0.046 Score=52.75 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=24.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
..+|+|.|+.|+||||+|+.+.+++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3579999999999999999999987543
No 335
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.90 E-value=0.032 Score=53.43 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=23.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
...|.|.|++|+||||+|+.+.....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998763
No 336
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.88 E-value=0.032 Score=54.47 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.+|+|+|+.|.||||+|+.+...+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988653
No 337
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.86 E-value=0.15 Score=59.08 Aligned_cols=157 Identities=13% Similarity=0.250 Sum_probs=79.7
Q ss_pred CCCCcccchHHHHHHHHhhcCC-----------CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhcc
Q 041067 160 NKNKLVGVESKVEEIESILGVE-----------SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQR 228 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 228 (770)
.-..+.|.++..++|.+.+... ....+-|.++|++|.|||.+|+++++..... |+. +
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-----f~~-v------ 542 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FIS-I------ 542 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-----EEE-C------
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-----eEE-e------
Confidence 3456789999999988876421 1124558899999999999999999875432 222 1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcchHHHH-HHHHCCCcEEEEEeCCCChH----------------hHHHHHhcccCCCCC
Q 041067 229 SGGLSCLQQKLLSNLLKHKNVMPFIDLI-FRRLSRMKVLIVFDDVTCLS----------------QLQSLIGSLYWLTPV 291 (770)
Q Consensus 229 ~~~~~~l~~~ll~~~~~~~~~~~~~~~l-~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~~g 291 (770)
.... +++...+ .....+..+ ...-+..++.|++|+++..- ....++..+......
T Consensus 543 --~~~~----l~s~~vG--ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 543 --KGPE----LLTMWFG--ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp --CHHH----HHTTTCS--SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred --ccch----hhccccc--hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 1111 1111111 011122222 22224578999999986420 134445444433333
Q ss_pred ceEEE--EcCchhhh-----hhcCcceEEEeCccChHHHHHHHHHhccCCCch
Q 041067 292 SRIII--TTRNKQVL-----RNWGVRKIYEMKALEYHHAIELFIMKYAQGVPL 337 (770)
Q Consensus 292 s~Iiv--TTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~glPL 337 (770)
..|+| ||-..+.. +-..-+..+.+..-+.++-.++|. ..+...|+
T Consensus 615 ~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~-~~l~~~~~ 666 (806)
T 3cf2_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILK-ANLRKSPV 666 (806)
T ss_dssp SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTT-TTSSCC--
T ss_pred CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHH-HHhcCCCC
Confidence 33333 44433322 111345677787766666666663 23344444
No 338
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.84 E-value=0.052 Score=55.92 Aligned_cols=37 Identities=22% Similarity=0.256 Sum_probs=28.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
..++|+|+|-|||||||.|..++--+...=..+.-++
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 5789999999999999999998877655433444443
No 339
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.77 E-value=0.038 Score=52.52 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=23.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
...+|+|.|+.|.||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998863
No 340
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.76 E-value=0.037 Score=55.15 Aligned_cols=28 Identities=18% Similarity=0.396 Sum_probs=24.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 183 KDVYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
....+|+|.|+.|+||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3467899999999999999999988754
No 341
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.75 E-value=0.033 Score=53.41 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
.+++|+|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 479999999999999999998764
No 342
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.75 E-value=0.036 Score=52.49 Aligned_cols=24 Identities=33% Similarity=0.590 Sum_probs=22.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
+|+|.|+.|+||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999864
No 343
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.72 E-value=0.031 Score=54.45 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
..|.|.|++|+||||+|+.++..+.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998763
No 344
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.70 E-value=0.032 Score=53.85 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=23.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
-.+|+|+|+.|+|||||++.+......
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 458999999999999999999986543
No 345
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.69 E-value=0.044 Score=52.70 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHH
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
...+|+|+|++|.||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999998764
No 346
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.68 E-value=0.15 Score=52.66 Aligned_cols=36 Identities=17% Similarity=0.014 Sum_probs=28.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
-.++.|.|.+|+||||+|..++.....+-..++|++
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 347999999999999999999977654436677775
No 347
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.66 E-value=0.1 Score=53.37 Aligned_cols=52 Identities=23% Similarity=0.292 Sum_probs=35.2
Q ss_pred hHHHHHHHHhhcCC------CCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEE
Q 041067 168 ESKVEEIESILGVE------SKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFL 219 (770)
Q Consensus 168 ~~~~~~l~~~L~~~------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 219 (770)
..-.+++.+.+... .....+|+|+|.+|+||||++..++..+...-..+.++
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 33445566666432 12367999999999999999999998776542233333
No 348
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.64 E-value=0.039 Score=53.15 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=25.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhC-CCCc
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISG-DFEG 215 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~ 215 (770)
..+|+|.|+.|+||||+|+.+.+.+.. .++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 458999999999999999999988654 3443
No 349
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.63 E-value=0.035 Score=53.24 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=21.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
.+|+|+|+.|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 479999999999999999998765
No 350
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.63 E-value=0.048 Score=52.55 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=23.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
...+|+|.|..|.|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999998754
No 351
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.62 E-value=0.058 Score=52.31 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=32.8
Q ss_pred cchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 166 GVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 166 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
+.++..+.+...+. ....++|+|+|.+|+|||||+..+.......
T Consensus 13 ~~~~~~~~~~~~~~--~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 13 ENKRLAEKNREALR--ESGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHHH--HHTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred hcHHHHHHHHHhhc--ccCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 44445555555553 2356899999999999999999999876544
No 352
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.61 E-value=0.076 Score=51.69 Aligned_cols=41 Identities=20% Similarity=0.367 Sum_probs=29.7
Q ss_pred HHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 170 KVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 170 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
..+.+...+. ......|+|+|.+|+|||||+..+.......
T Consensus 25 ~a~~~r~~~~--~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 25 LADKNRKLLN--KHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHH--HTTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHH--hCCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3444444442 2346789999999999999999999875443
No 353
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.59 E-value=0.03 Score=52.08 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=18.6
Q ss_pred EEEEEEecCCCcHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIF 206 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~ 206 (770)
.+++|+|..|.|||||++.++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 589999999999999999643
No 354
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.56 E-value=0.044 Score=51.33 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.++|+|..|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998754
No 355
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.52 E-value=0.038 Score=53.06 Aligned_cols=22 Identities=50% Similarity=0.605 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFD 207 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~ 207 (770)
.+|+|.|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 356
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.52 E-value=0.04 Score=54.66 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
..+|+|+|+.|+||||+++.+++++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998753
No 357
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=93.50 E-value=1.2 Score=46.25 Aligned_cols=124 Identities=7% Similarity=-0.069 Sum_probs=79.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHh-CCCCceEEEEecchhhccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHCC
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKIS-GDFEGSCFLENVREESQRSGGLSCLQQKLLSNLLKHKNVMPFIDLIFRRLSR 262 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~L~~ 262 (770)
-.++..++|..|.||++.|+.+...+. ..|+....+. ... .. ++..+...+... -+-+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~---~~-~~~~l~~~~~~~----------------plf~ 75 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-IDP---NT-DWNAIFSLCQAM----------------SLFA 75 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CCT---TC-CHHHHHHHHHHH----------------HHCC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ecC---CC-CHHHHHHHhcCc----------------CCcc
Confidence 356889999999999999999998754 3454322222 211 12 555554433211 1335
Q ss_pred CcEEEEEeCCCC---hHhHHHHHhcccCCCCCceEEEEcCc-------hhhhhh-cCcceEEEeCccChHHHHHHHH
Q 041067 263 MKVLIVFDDVTC---LSQLQSLIGSLYWLTPVSRIIITTRN-------KQVLRN-WGVRKIYEMKALEYHHAIELFI 328 (770)
Q Consensus 263 kr~LlVLDdv~~---~~~~~~l~~~~~~~~~gs~IivTTR~-------~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 328 (770)
.+-++|+|+++. .+.++.+...+....+++.+|++|.. ..+.+. ......++..+++.++..+.+.
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 667888999865 34677777777666678888876643 234433 2345789999999988876664
No 358
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.46 E-value=0.057 Score=52.25 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=24.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 183 KDVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
.+.++|.|.|++|+||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999875
No 359
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.42 E-value=0.43 Score=48.19 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=25.5
Q ss_pred chHHHHHHHHhccceeEeecCCccCchhhHHHHHHHH
Q 041067 29 ISKSLVNVIEASAISVIVFSEGYASSRSCLDELVKIL 65 (770)
Q Consensus 29 ~~~~l~~ai~~s~~~ivv~s~~y~~s~~cl~El~~i~ 65 (770)
.-.++.++++++++.|.|+.-.-..+..+ .++.+.+
T Consensus 13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l 48 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL 48 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH
Confidence 34688999999999999987665555555 2444444
No 360
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.38 E-value=0.031 Score=54.03 Aligned_cols=25 Identities=24% Similarity=0.435 Sum_probs=22.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
+|+|.|..|+||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988653
No 361
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.33 E-value=0.044 Score=52.12 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=23.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.-++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999997654
No 362
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.31 E-value=0.099 Score=50.92 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=27.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhC------CCCceEEEE
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISG------DFEGSCFLE 220 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~ 220 (770)
-.+++|+|..|+|||||++.++..... .-...+|+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~ 66 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 66 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEE
Confidence 458999999999999999999875432 233466665
No 363
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.30 E-value=0.032 Score=55.39 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
+|+|+|+.|.||||+++.++....
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 699999999999999999998764
No 364
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.28 E-value=0.048 Score=53.37 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
...|.|.|++|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999864
No 365
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.25 E-value=0.065 Score=53.44 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=23.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
...+|.|.|++|.||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999998753
No 366
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.23 E-value=0.049 Score=52.73 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
.|+|.|++|+||||+|+.+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 367
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.23 E-value=0.053 Score=55.21 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=23.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
...+|.|.|++|+||||+|+.+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998865
No 368
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.20 E-value=0.077 Score=54.37 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=27.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
...+|+|+|.+|+||||+++.++...... ...+++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 35699999999999999999999876544 3444443
No 369
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.14 E-value=0.037 Score=52.90 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
++++|+|+.|+|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4789999999999999999987654
No 370
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.10 E-value=0.043 Score=54.73 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=23.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
-.+|+|.|+.|.||||+++.++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999998753
No 371
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.07 E-value=0.052 Score=51.55 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=22.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
.|+|.|+.|+||||+|+.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988643
No 372
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.02 E-value=0.052 Score=52.53 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
.|+|.|++|+||||+|+.+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 373
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.01 E-value=0.059 Score=54.68 Aligned_cols=24 Identities=38% Similarity=0.768 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHH
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFD 207 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~ 207 (770)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999983
No 374
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.00 E-value=0.083 Score=52.13 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=27.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
.++.|.|.+|+||||||..++......=..++|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 48999999999999999998876544434566765
No 375
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.98 E-value=0.061 Score=51.93 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=23.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
..+|.|.|+.|.||||+|+.+...+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998764
No 376
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.96 E-value=0.14 Score=52.44 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=27.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
..+++|+|..|+||||+++.++..+... ...+.+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~ 134 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 134 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 5699999999999999999999876543 3344443
No 377
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.96 E-value=0.047 Score=53.17 Aligned_cols=26 Identities=27% Similarity=0.163 Sum_probs=22.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
...|.|.|++|+||||+|+.++.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999998764
No 378
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.94 E-value=0.094 Score=51.61 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=27.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhC------CCCceEEEE
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISG------DFEGSCFLE 220 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~ 220 (770)
-.+++|+|.+|+||||||+.++..... .-..++|+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 348999999999999999999986322 134667776
No 379
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.92 E-value=0.065 Score=50.09 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=23.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
-.+|+|.|+.|.||||+|+.+...+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35789999999999999999998764
No 380
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.90 E-value=0.17 Score=44.57 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=24.0
Q ss_pred ccCCccccCccEEeccCcCccccCcc-cccCCCCCEEeccCCC
Q 041067 645 RLPEISSGNISWLFLRETAIEELPSS-IERLHRLGYLDLLDCK 686 (770)
Q Consensus 645 ~lp~~~~~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~ 686 (770)
.+|..+..+|++|+|++|.+..+|.. +..+++|+.|+|.+|.
T Consensus 24 ~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 24 SLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 44544444555666666666666553 4556666666666654
No 381
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.85 E-value=0.082 Score=51.58 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=26.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
.+++|+|.+|+|||||++.++......-..+.|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 47999999999999999999976543333455554
No 382
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.82 E-value=0.059 Score=51.64 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=22.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
+|+|.|+.|+||||+|+.+...+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998764
No 383
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.72 E-value=0.063 Score=55.30 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=24.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 183 KDVYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
....+|+|.|..|.|||||++.+..-+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34679999999999999999999987653
No 384
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.72 E-value=0.064 Score=55.50 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.+|+|.|+.|+||||||+.++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 385
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.65 E-value=0.07 Score=51.74 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=21.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
..|.|.|++|+||||+|+.++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999876
No 386
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.63 E-value=0.06 Score=53.38 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=23.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
...+|+|.|..|.||||||+.+...+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998865
No 387
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.62 E-value=0.058 Score=51.88 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
.+++|+|..|.|||||++.+..-.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 489999999999999999998765
No 388
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.61 E-value=0.3 Score=52.54 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=23.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
...+|.|+|++|.||||+|+.++.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999988754
No 389
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.57 E-value=0.12 Score=58.63 Aligned_cols=48 Identities=21% Similarity=0.367 Sum_probs=39.9
Q ss_pred CCcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCC
Q 041067 162 NKLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGDF 213 (770)
Q Consensus 162 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 213 (770)
..++|.+..++.+...+..+ ..+.|+|.+|+||||||+.++..+....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 46899999998888888654 3799999999999999999998765443
No 390
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.56 E-value=0.075 Score=51.52 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFD 207 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~ 207 (770)
..+|+|.|+.|.||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 391
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.55 E-value=0.063 Score=52.55 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=23.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
..+|+|.|++|.||||+|+.+...+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998763
No 392
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.52 E-value=0.075 Score=51.39 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
.|.|.|++|+||||+|+.+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 393
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.52 E-value=0.065 Score=51.23 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
..|+|.|+.|+||||+|+.+.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998865
No 394
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.51 E-value=0.071 Score=48.80 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=22.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
-.+++|.|..|.|||||++.++.-.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3589999999999999999999875
No 395
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.46 E-value=0.09 Score=51.99 Aligned_cols=35 Identities=29% Similarity=0.211 Sum_probs=25.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh-CCCCceEEEE
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKIS-GDFEGSCFLE 220 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~ 220 (770)
.+++|+|..|.|||||++.++.... ..-....++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4899999999999999999985422 2334455554
No 396
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.39 E-value=0.11 Score=52.89 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=24.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
...+++++|.+|+||||++..++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999987653
No 397
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.39 E-value=0.11 Score=48.26 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=23.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
.++++|.|..|+|||||++.+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 568999999999999999999987653
No 398
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.38 E-value=0.41 Score=51.93 Aligned_cols=52 Identities=15% Similarity=-0.010 Sum_probs=35.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCC-CCceEEEEecchhhccCCCHHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGD-FEGSCFLENVREESQRSGGLSCLQQKLLSNL 243 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 243 (770)
-.++.|.|.+|+||||+|..++..+... =..++|++- . . ....+...++...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl-E-----~-~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL-E-----M-PAAQLTLRMMCSE 252 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES-S-----S-CHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC-C-----C-CHHHHHHHHHHHH
Confidence 3488999999999999999999876532 235666651 1 1 3455666655443
No 399
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.38 E-value=0.11 Score=54.25 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=34.0
Q ss_pred HHHHhhc-CCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 173 EIESILG-VESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 173 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
.+..+|. .+-..-+++.|+|.+|+||||||..++......=..++|++
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4445554 22223458999999999999999999977654445667776
No 400
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.35 E-value=0.077 Score=51.74 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
.|.|.|+.|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999876
No 401
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.34 E-value=0.18 Score=52.70 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=26.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEE
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFL 219 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 219 (770)
..+++|+|..|+||||+++.++..+... ...+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l 190 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 190 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEE
Confidence 5699999999999999999999876543 334444
No 402
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.33 E-value=0.13 Score=55.05 Aligned_cols=84 Identities=14% Similarity=0.126 Sum_probs=48.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhCCCC----ceEEEEecchhhccCCCHHHHHHHHHHHH-hc-------CCCCc----
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISGDFE----GSCFLENVREESQRSGGLSCLQQKLLSNL-LK-------HKNVM---- 250 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~~f~----~~~~~~~~~~~~~~~~~~~~l~~~ll~~~-~~-------~~~~~---- 250 (770)
.++|.|..|+|||+|+..+++....+-+ .++|+- +.+-.. .+..+.+.+...= .. ..+..
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~-iGeR~~---Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r 228 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAA-IGITFE---EAEFFMEDFRQTGAIDRSVMFMNLANDPAIER 228 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEE-EEECHH---HHHHHHHHHHHHTGGGGEEEEEEETTSCHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEE-ecCCcH---HHHHHHHHHhhcCCccceEEEEECCCCCHHHH
Confidence 3789999999999999999987654333 344443 443322 4455555544320 00 01111
Q ss_pred ----chHHHHHHHHC---CCcEEEEEeCCCC
Q 041067 251 ----PFIDLIFRRLS---RMKVLIVFDDVTC 274 (770)
Q Consensus 251 ----~~~~~l~~~L~---~kr~LlVLDdv~~ 274 (770)
...-.+-++++ ++.+|+++||+-.
T Consensus 229 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 229 IATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 11123445543 7899999999853
No 403
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.30 E-value=0.14 Score=51.11 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=24.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
...++.+.|.||+||||++..++....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998766
No 404
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.28 E-value=0.079 Score=54.42 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=22.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
.+|.|+|+.|+||||||+.++.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999999874
No 405
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.27 E-value=0.06 Score=52.32 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=21.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
.+++|+|+.|+|||||++.+....
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 479999999999999999998765
No 406
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.27 E-value=0.14 Score=51.28 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=27.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
++|+|.|-||+||||+|..++..+..+=..+..++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 57888999999999999999988765533444444
No 407
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.25 E-value=0.12 Score=54.30 Aligned_cols=49 Identities=18% Similarity=0.229 Sum_probs=34.4
Q ss_pred HHHHHhhc-CCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 172 EEIESILG-VESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 172 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
..|..+|. .+=..-+++.|+|.+|+||||||..++......-..++|++
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34444553 22223458999999999999999999987654444677876
No 408
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.25 E-value=0.07 Score=52.39 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=22.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
...|.|.|+.|+||||+|+.+++++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34699999999999999999998864
No 409
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.21 E-value=0.4 Score=53.73 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=28.5
Q ss_pred HHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 169 SKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 169 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
...+.+...+. .+++.|.|.+|.||||++..+...+...
T Consensus 193 ~Q~~Av~~~~~-----~~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 193 EQASVLDQLAG-----HRLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp HHHHHHHHHTT-----CSEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh-----CCEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 44444554442 2578899999999999999999876544
No 410
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.20 E-value=0.05 Score=50.58 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=23.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
.+++|+|..|.|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 47999999999999999999887654
No 411
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.16 E-value=0.16 Score=52.69 Aligned_cols=51 Identities=20% Similarity=0.139 Sum_probs=35.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNL 243 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 243 (770)
.++.|.|.+|+||||+|..++.....+=..++|++- .. ....+...++...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl------Em-s~~ql~~Rlls~~ 97 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL------EM-SAEQLALRALSDL 97 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES------SS-CHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CC-CHHHHHHHHHHHh
Confidence 478999999999999999999876544345566651 11 4455556655443
No 412
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.12 E-value=0.12 Score=52.77 Aligned_cols=35 Identities=14% Similarity=0.060 Sum_probs=27.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCC-ceEEEE
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFE-GSCFLE 220 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~~ 220 (770)
.+++|.|.+|+|||||++.++..+...-. .+.|+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 48999999999999999999987654433 455554
No 413
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.10 E-value=0.073 Score=50.35 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
+++|+|..|+|||||++.++....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 589999999999999999987653
No 414
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.06 E-value=0.054 Score=55.21 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=20.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
...+|+|.|..|+||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999988654
No 415
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.02 E-value=0.13 Score=52.71 Aligned_cols=37 Identities=22% Similarity=0.256 Sum_probs=28.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
..++|+|+|-||+||||+|..++..+...=..+..++
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4788999999999999999999988765433444444
No 416
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.01 E-value=0.073 Score=51.72 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=22.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.+++|+|+.|+|||||.+.+.....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4899999999999999999988754
No 417
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.94 E-value=0.19 Score=54.54 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=27.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
..+++|+|..|+|||||++.++..+... .+.+++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 5699999999999999999999876543 3445554
No 418
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.90 E-value=0.19 Score=51.63 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=24.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 183 KDVYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
....+|+|.|..|.|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988765
No 419
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=91.79 E-value=1.4 Score=43.04 Aligned_cols=41 Identities=22% Similarity=0.136 Sum_probs=29.3
Q ss_pred cccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 164 LVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 164 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
+.=++...+.+..++..+ -+.|+|..|.|||.+|..+....
T Consensus 92 ~~l~~~Q~~ai~~~~~~~-----~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDK-----RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCCHHHHHHHHHHTTTS-----EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHHhCC-----CEEEEeCCCCCHHHHHHHHHHHc
Confidence 334556666666665321 27789999999999999888765
No 420
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.75 E-value=0.098 Score=56.41 Aligned_cols=28 Identities=32% Similarity=0.306 Sum_probs=24.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
.++|+|+|.+|+||||+|..++.....+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5689999999999999999999876543
No 421
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.75 E-value=0.15 Score=52.09 Aligned_cols=29 Identities=31% Similarity=0.268 Sum_probs=24.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
...+++|+|.+|+||||++..++......
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35689999999999999999999876644
No 422
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.72 E-value=0.24 Score=54.33 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=24.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
..++|+|+|.+|+||||++..++..++..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 47799999999999999999999876554
No 423
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.70 E-value=0.17 Score=51.14 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
.++.|+|.+|+||||||..++..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 48999999999999999999876543
No 424
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=91.68 E-value=0.18 Score=54.60 Aligned_cols=85 Identities=18% Similarity=0.140 Sum_probs=46.7
Q ss_pred EEEEEecCCCcHHHHH-HHHHHHHh------CCCCceEEEEecchhhccCCCHHHHHHHHHHHH--------hcCCCCc-
Q 041067 187 SLGIWGIGGIGKTTIA-RAIFDKIS------GDFEGSCFLENVREESQRSGGLSCLQQKLLSNL--------LKHKNVM- 250 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA-~~~~~~~~------~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~--------~~~~~~~- 250 (770)
.++|.|..|+|||+|| ..+.+... ++-+..+.+..+.+-.. .+..+.+.+...= ....+..
T Consensus 164 R~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~---Ev~~~~~~~~~~g~m~~tvvV~atad~p~ 240 (510)
T 2ck3_A 164 RELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRS---TVAQLVKRLTDADAMKYTIVVSATASDAA 240 (510)
T ss_dssp BCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHH---HHHHHHHHHHHTTCGGGEEEEEECTTSCH
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcH---HHHHHHHHHHhcCCcccceEEEECCCCCH
Confidence 5899999999999995 46666554 23454343333443322 3445555544310 0011111
Q ss_pred -------chHHHHHHHH--CCCcEEEEEeCCCC
Q 041067 251 -------PFIDLIFRRL--SRMKVLIVFDDVTC 274 (770)
Q Consensus 251 -------~~~~~l~~~L--~~kr~LlVLDdv~~ 274 (770)
...-.+-+++ +++.+|+++||+..
T Consensus 241 ~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 241 PLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 1112234444 47899999999844
No 425
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.66 E-value=0.16 Score=50.56 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=29.6
Q ss_pred HHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 171 VEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 171 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
...+..++.........|.++|++|.|||++|.++++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 344666775442445579999999999999999999863
No 426
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.60 E-value=0.1 Score=53.41 Aligned_cols=23 Identities=35% Similarity=0.361 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
.+|.|.|++|+||||+|+.+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 427
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.55 E-value=0.15 Score=49.26 Aligned_cols=29 Identities=14% Similarity=-0.009 Sum_probs=23.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhC-CCCc
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISG-DFEG 215 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~ 215 (770)
.|.+.|.||+||||+|..++..... .++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V 37 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRV 37 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCE
Confidence 4788999999999999999987554 3444
No 428
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.51 E-value=0.13 Score=52.28 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=23.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
..++|.|.|+.|+||||||..++.++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35689999999999999999999874
No 429
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.48 E-value=0.46 Score=51.71 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=27.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCC-CCceEEEE
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGD-FEGSCFLE 220 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 220 (770)
.++.|.|.+|+||||||..++..+... -..++|+.
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 489999999999999999999876543 23566665
No 430
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.45 E-value=0.097 Score=53.28 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=22.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
..+|.|.|+.|+||||||..++.++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3579999999999999999998764
No 431
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.39 E-value=0.15 Score=53.88 Aligned_cols=27 Identities=26% Similarity=0.136 Sum_probs=23.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 183 KDVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
....+++|+|+.|.|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345689999999999999999999764
No 432
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.39 E-value=0.63 Score=44.12 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=26.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhCCCCceEEE
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISGDFEGSCFL 219 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 219 (770)
.|+|=|.-|+||||.++.+++.+..+-..+.+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 377889999999999999999886654444443
No 433
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.37 E-value=0.31 Score=50.81 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=25.1
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 182 SKDVYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
.....+|+|+|.+|+||||++..+......
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 345678999999999999999999876543
No 434
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.36 E-value=0.23 Score=53.74 Aligned_cols=83 Identities=18% Similarity=0.142 Sum_probs=46.0
Q ss_pred EEEEEecCCCcHHHHHH-HHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHHh--------cCCCCc-------
Q 041067 187 SLGIWGIGGIGKTTIAR-AIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNLL--------KHKNVM------- 250 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~--------~~~~~~------- 250 (770)
.++|.|.+|+|||+||. .+.+.. +-+..+.+..+.+-.. .+..+.+.+...=. ...+..
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~~--~~dv~~V~~~iGeR~~---Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a 238 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQK--GQDVICIYVAIGQKQS---TVAGVVETLRQHDALDYTIVVTASASEPAPLLYLA 238 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGGG--SCSEEEEEEEESCCHH---HHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCchHHHHHHHHHhh--cCCcEEEEEECCCcch---HHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHH
Confidence 58999999999999965 666654 3454433333444322 34455555443110 001111
Q ss_pred -chHHHHHHHH--CCCcEEEEEeCCCC
Q 041067 251 -PFIDLIFRRL--SRMKVLIVFDDVTC 274 (770)
Q Consensus 251 -~~~~~l~~~L--~~kr~LlVLDdv~~ 274 (770)
...-.+-+++ +++.+|+++||+..
T Consensus 239 ~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 239 PYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 0112334444 47899999999843
No 435
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.36 E-value=0.083 Score=54.45 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
..+|.|+|+.|+||||||..++.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4589999999999999999998764
No 436
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.35 E-value=0.12 Score=50.82 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHH
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
...+|+|.|+.|.||||+++.+...+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999999865
No 437
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.33 E-value=0.068 Score=52.39 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=15.9
Q ss_pred EEEEEEecCCCcHHHHHHHHH-HHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIF-DKI 209 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~-~~~ 209 (770)
.+++|+|+.|+|||||++.+. ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 489999999999999999998 654
No 438
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.30 E-value=0.18 Score=51.18 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=26.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
.++|+|.|-||+||||+|..++..+...=..+..++
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 367888999999999999999988765422344443
No 439
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.19 E-value=0.093 Score=50.47 Aligned_cols=22 Identities=32% Similarity=0.145 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
+++|+|..|.|||||++.++.-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999864
No 440
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.18 E-value=0.23 Score=53.84 Aligned_cols=83 Identities=19% Similarity=0.143 Sum_probs=46.2
Q ss_pred EEEEEecCCCcHHHHHH-HHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHH--------hcCCCCc-------
Q 041067 187 SLGIWGIGGIGKTTIAR-AIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNL--------LKHKNVM------- 250 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~--------~~~~~~~------- 250 (770)
.++|.|.+|+|||+||. .+.+.. .-+..+.+..+.+-.. .+..+.+.+...= ....+..
T Consensus 177 R~~I~g~~g~GKT~Lal~~I~~~~--~~dv~~V~~~IGeR~~---Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAIDTIINQK--GQGVYCIYVAIGQKKS---AIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp BEEEEEETTSSHHHHHHHHHHTTT--TTTEEEEEEEESCCHH---HHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred EEEEEcCCCCCccHHHHHHHHHhh--cCCcEEEEEEcCCCcH---HHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 58999999999999965 666654 3454433333443322 3445555554310 0011111
Q ss_pred -chHHHHHHHH--CCCcEEEEEeCCCC
Q 041067 251 -PFIDLIFRRL--SRMKVLIVFDDVTC 274 (770)
Q Consensus 251 -~~~~~l~~~L--~~kr~LlVLDdv~~ 274 (770)
...-.+-+++ +++.+|+++||+..
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 1112334444 47899999999844
No 441
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.16 E-value=0.12 Score=48.80 Aligned_cols=24 Identities=17% Similarity=0.436 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
...|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 567999999999999999999864
No 442
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.06 E-value=0.2 Score=54.90 Aligned_cols=49 Identities=8% Similarity=0.061 Sum_probs=34.6
Q ss_pred CcccchHHHHHHHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 163 KLVGVESKVEEIESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 163 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
..+.|.+-.+.+.+..........+|.+.|+.|.||||+|+.++.++..
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3445555555555554222234568999999999999999999999764
No 443
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.04 E-value=0.71 Score=48.09 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
+++|+|..|+|||||.+.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcc
Confidence 7999999999999999988753
No 444
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.03 E-value=0.1 Score=50.94 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFD 207 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~ 207 (770)
+++|+|..|.|||||.+.++.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999999875
No 445
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.98 E-value=0.11 Score=51.12 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
.+++|+|..|.|||||.+.++.-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999853
No 446
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.97 E-value=0.21 Score=51.68 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=28.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCC------CCceEEEE
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGD------FEGSCFLE 220 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~ 220 (770)
-.++.|+|.+|+||||||..++...... -..++|++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 3589999999999999999999875332 24567776
No 447
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.94 E-value=0.14 Score=46.40 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
+.|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 448
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.89 E-value=0.32 Score=42.66 Aligned_cols=53 Identities=19% Similarity=0.134 Sum_probs=32.3
Q ss_pred EEeccCcCcc--ccCcccccCCCCCEEeccCCCCCCCCCc-ccCCCCCCcEEEeecCCC
Q 041067 656 WLFLRETAIE--ELPSSIERLHRLGYLDLLDCKRLKSLPR-SLWMLKSLGVLNLSGCSN 711 (770)
Q Consensus 656 ~L~l~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~ 711 (770)
.++.+++.++ .+|..+. ++|++|+|++|.. ..+|. .+..+++|+.|+|++|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNL-TALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCC-SSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcC-CccChhhhhhccccCEEEecCCCe
Confidence 4556666666 7775432 4677777777663 44443 355666777777776543
No 449
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.84 E-value=0.27 Score=53.24 Aligned_cols=36 Identities=17% Similarity=0.014 Sum_probs=28.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
-.++.|.|.+|+||||+|..++.....+=..++|++
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 347999999999999999999988654433566664
No 450
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.80 E-value=0.23 Score=52.02 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=31.9
Q ss_pred HHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCC--C---C-ceEEEE
Q 041067 174 IESILGVESKDVYSLGIWGIGGIGKTTIARAIFDKISGD--F---E-GSCFLE 220 (770)
Q Consensus 174 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f---~-~~~~~~ 220 (770)
+..+|..+-..-.++.|+|..|+|||||++.++...... . . .++|++
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~ 172 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 172 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEE
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEe
Confidence 333443222345689999999999999999999875321 1 2 347876
No 451
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.78 E-value=0.1 Score=51.28 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFD 207 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~ 207 (770)
.+++|+|..|.|||||.+.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3799999999999999999874
No 452
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.74 E-value=0.16 Score=50.04 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=23.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
...|+|.|..|+||||+|+.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998764
No 453
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.69 E-value=0.16 Score=49.67 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=24.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
-..|+|.|+.|+||||+++.+...+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999999998765
No 454
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.64 E-value=0.22 Score=53.19 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.++|.|.+|+|||+|+..+++...
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCB
T ss_pred EEEEecCCCCCchHHHHHHHHHHH
Confidence 478999999999999999988754
No 455
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=90.60 E-value=0.23 Score=52.24 Aligned_cols=49 Identities=24% Similarity=0.216 Sum_probs=34.1
Q ss_pred HHHHHhhc-CCCCCeEEEEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 172 EEIESILG-VESKDVYSLGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 172 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
..|..+|. .+=..-.++.|+|.+|+||||||..++......-..++|++
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 34555553 12123347889999999999999999887654445678876
No 456
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.57 E-value=0.13 Score=60.43 Aligned_cols=53 Identities=21% Similarity=0.326 Sum_probs=40.8
Q ss_pred CCCCcccchHHHHHHHHhhcCC-----------CCCeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 160 NKNKLVGVESKVEEIESILGVE-----------SKDVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 160 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
.-..++|.++..+.+.+.+... -.....+.++|.+|+||||||+.++......
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3456889999999998877521 0123568899999999999999999987544
No 457
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.51 E-value=0.25 Score=53.11 Aligned_cols=82 Identities=17% Similarity=0.152 Sum_probs=47.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhCCC----CceEEEEecchhhccCCCHHHHHHHHHHHH-hc-------CCCCc----
Q 041067 187 SLGIWGIGGIGKTTIARAIFDKISGDF----EGSCFLENVREESQRSGGLSCLQQKLLSNL-LK-------HKNVM---- 250 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~-~~-------~~~~~---- 250 (770)
.++|.|.+|+|||+|+..+++...... +.++|+- +.+-.. .+..+.+++...= .. ..+..
T Consensus 154 r~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~-iGER~~---Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r 229 (469)
T 2c61_A 154 KLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAA-MGITNE---EAQYFMSDFEKTGALERAVVFLNLADDPAVER 229 (469)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEE-EEECHH---HHHHHHHHHHHHSGGGGEEEEEEETTSCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEE-ccCCcH---HHHHHHHHHHhccCccceEEEEECCCCCHHHH
Confidence 478899999999999999998754321 2344443 443322 3455555554321 00 01111
Q ss_pred ----chHHHHHHHHC---CCcEEEEEeCC
Q 041067 251 ----PFIDLIFRRLS---RMKVLIVFDDV 272 (770)
Q Consensus 251 ----~~~~~l~~~L~---~kr~LlVLDdv 272 (770)
...-.+-++++ ++.+|+++||+
T Consensus 230 ~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 230 IVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 11122344443 68999999997
No 458
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.50 E-value=0.15 Score=46.73 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFD 207 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~ 207 (770)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999875
No 459
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.48 E-value=0.17 Score=53.48 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.+|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5799999999999999999998754
No 460
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.39 E-value=0.12 Score=50.96 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
.+++|+|..|.|||||++.++.-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999764
No 461
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.39 E-value=0.12 Score=48.89 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
+.|.|.|..|+||||||.++..+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999875
No 462
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.38 E-value=0.13 Score=48.76 Aligned_cols=24 Identities=17% Similarity=0.436 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999864
No 463
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.28 E-value=0.14 Score=50.83 Aligned_cols=21 Identities=24% Similarity=0.465 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFD 207 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~ 207 (770)
+++|+|..|.|||||.+.++.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999999986
No 464
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.20 E-value=0.12 Score=51.66 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
.+++|+|..|.|||||.+.++.-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999998753
No 465
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.20 E-value=0.12 Score=51.99 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFD 207 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~ 207 (770)
+++|+|..|.|||||++.+.-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 799999999999999999874
No 466
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.19 E-value=0.23 Score=47.26 Aligned_cols=35 Identities=23% Similarity=0.203 Sum_probs=26.7
Q ss_pred EEEEEE-ecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 186 YSLGIW-GIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 186 ~vv~I~-G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
++|+|+ +-||+||||+|..++..+..+-..+..++
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 578888 68999999999999988765433445554
No 467
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=90.19 E-value=0.36 Score=48.19 Aligned_cols=29 Identities=10% Similarity=0.068 Sum_probs=22.5
Q ss_pred chHHHHHHHHhccceeEeecCCccCchhh
Q 041067 29 ISKSLVNVIEASAISVIVFSEGYASSRSC 57 (770)
Q Consensus 29 ~~~~l~~ai~~s~~~ivv~s~~y~~s~~c 57 (770)
...++.+.++.+++.|.|+.-.-..+..+
T Consensus 11 a~~~~~~~l~~~D~vl~VvDar~P~~~~~ 39 (262)
T 3cnl_A 11 AKRQIKDLLRLVNTVVEVRDARAPFATSA 39 (262)
T ss_dssp TTHHHHHHHTTCSEEEEEEETTSTTTTSC
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCcCcC
Confidence 34689999999999999998665555544
No 468
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.13 E-value=0.16 Score=46.04 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
.|+++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999864
No 469
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=90.13 E-value=0.41 Score=50.58 Aligned_cols=38 Identities=18% Similarity=0.154 Sum_probs=29.4
Q ss_pred CCeEEEEEEe-cCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 183 KDVYSLGIWG-IGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 183 ~~~~vv~I~G-~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
...++|+|+| -||+||||+|..++..+...-..+..++
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4578999986 9999999999999987765533455554
No 470
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=90.13 E-value=0.34 Score=47.59 Aligned_cols=37 Identities=19% Similarity=0.124 Sum_probs=27.8
Q ss_pred CeEEEEEEe-cCCCcHHHHHHHHHHHHhCC-CCceEEEE
Q 041067 184 DVYSLGIWG-IGGIGKTTIARAIFDKISGD-FEGSCFLE 220 (770)
Q Consensus 184 ~~~vv~I~G-~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 220 (770)
..++|+|+| -||+||||+|..++..+... =..+..++
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 357888885 69999999999999988776 33444443
No 471
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.09 E-value=0.15 Score=51.20 Aligned_cols=23 Identities=26% Similarity=0.409 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
.+++|+|..|.|||||++.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999863
No 472
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.08 E-value=0.2 Score=45.65 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
.-.|+|+|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999999864
No 473
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=90.07 E-value=0.26 Score=54.56 Aligned_cols=30 Identities=17% Similarity=0.089 Sum_probs=25.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCCC
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGDF 213 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 213 (770)
...+|.++|++|.||||+|+.++..+...|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 356899999999999999999998765444
No 474
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.05 E-value=0.13 Score=48.05 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFD 207 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~ 207 (770)
-|+|+|.+|+|||||++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999875
No 475
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=90.02 E-value=0.18 Score=48.24 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=23.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKIS 210 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~ 210 (770)
.+|+|.|+.|.||||+|+.++.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999999864
No 476
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.02 E-value=0.4 Score=49.81 Aligned_cols=29 Identities=28% Similarity=0.459 Sum_probs=24.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHHhC
Q 041067 183 KDVYSLGIWGIGGIGKTTIARAIFDKISG 211 (770)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 211 (770)
....+++|+|.+|+|||||.+.+......
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 44578999999999999999999876543
No 477
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.02 E-value=0.13 Score=50.72 Aligned_cols=21 Identities=38% Similarity=0.460 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFD 207 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~ 207 (770)
+++|+|..|.|||||.+.++-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999999875
No 478
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=89.95 E-value=0.3 Score=52.32 Aligned_cols=29 Identities=31% Similarity=0.268 Sum_probs=25.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
...+++|+|.+|+||||++..++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999887655
No 479
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.94 E-value=0.13 Score=51.51 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
.+++|+|..|.|||||++.+..-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 37999999999999999998753
No 480
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.92 E-value=0.26 Score=45.95 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=21.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHH
Q 041067 183 KDVYSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
.....|+|+|.+|+|||||...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999988753
No 481
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.91 E-value=0.3 Score=54.29 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=24.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCC
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGD 212 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 212 (770)
-.+|+|+|+.|.|||||++.++..+...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 3689999999999999999999987643
No 482
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.90 E-value=0.13 Score=51.34 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
.+++|+|..|.|||||.+.++--
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 37999999999999999998753
No 483
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.89 E-value=0.13 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
.+++|+|..|.|||||.+.++.-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999998753
No 484
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=89.87 E-value=0.21 Score=54.16 Aligned_cols=84 Identities=14% Similarity=0.180 Sum_probs=44.6
Q ss_pred EEEEEecCCCcHHHHHH-HHHHHHhCCCCceEEEEecchhhccCCCHHHHHHHHHHHH-h-------cCCCCc-------
Q 041067 187 SLGIWGIGGIGKTTIAR-AIFDKISGDFEGSCFLENVREESQRSGGLSCLQQKLLSNL-L-------KHKNVM------- 250 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~-~-------~~~~~~------- 250 (770)
.++|.|.+|+|||+||. .+.+... -+..+.+..+.+-.. .+..+.+.+...= . ...+..
T Consensus 165 R~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGeR~~---Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVATDTILNQQG--QNVICVYVAIGQKAS---SVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTCCT--TTCEEEEEEESCCHH---HHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred EEEEecCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCCCch---HHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 57999999999999965 6665432 454433333443322 3344444433210 0 001111
Q ss_pred -chHHHHHHHH--CCCcEEEEEeCCCCh
Q 041067 251 -PFIDLIFRRL--SRMKVLIVFDDVTCL 275 (770)
Q Consensus 251 -~~~~~l~~~L--~~kr~LlVLDdv~~~ 275 (770)
...-.+-+++ +++.+|+++||+...
T Consensus 240 ~~~a~tiAEyfrd~G~dVLli~Dsltr~ 267 (507)
T 1fx0_A 240 PYTGAALAEYFMYRERHTLIIYDDLSKQ 267 (507)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecHHHH
Confidence 1111223333 589999999998543
No 485
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.86 E-value=0.12 Score=50.03 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
+++|+|..|.|||||.+.++.-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999998753
No 486
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.86 E-value=2.4 Score=46.63 Aligned_cols=52 Identities=8% Similarity=-0.103 Sum_probs=35.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhCC-CCceEEEEecchhhccCCCHHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDKISGD-FEGSCFLENVREESQRSGGLSCLQQKLLSNL 243 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 243 (770)
-.++.|.|.+|+||||||..++...... =..++|++- .. ....+...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~------E~-s~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML------EE-SVEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES------SS-CHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec------cC-CHHHHHHHHHHHH
Confidence 3478999999999999999999887654 345677652 11 3445555554443
No 487
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=89.85 E-value=0.4 Score=51.75 Aligned_cols=82 Identities=20% Similarity=0.155 Sum_probs=44.9
Q ss_pred EEEEEecCCCcHHHHH-HHHHHHHhCCCCce-EEEEecchhhccCCCHHHHHHHHHHHHhc--------CCCCc------
Q 041067 187 SLGIWGIGGIGKTTIA-RAIFDKISGDFEGS-CFLENVREESQRSGGLSCLQQKLLSNLLK--------HKNVM------ 250 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA-~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~l~~~ll~~~~~--------~~~~~------ 250 (770)
.++|.|..|+|||+|| ..+.+. .+-+.. +|+. +.+-.. .+..+.+.+...=.. ..+..
T Consensus 164 R~~Ifg~~g~GKT~l~l~~I~n~--~~~dv~~V~~~-IGeR~~---ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~ 237 (513)
T 3oaa_A 164 RELIIGDRQTGKTALAIDAIINQ--RDSGIKCIYVA-IGQKAS---TISNVVRKLEEHGALANTIVVVATASESAALQYL 237 (513)
T ss_dssp BCEEEESSSSSHHHHHHHHHHTT--SSSSCEEEEEE-ESCCHH---HHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHH
T ss_pred EEEeecCCCCCcchHHHHHHHhh--ccCCceEEEEE-ecCChH---HHHHHHHHHhhcCcccceEEEEECCCCChHHHHH
Confidence 5899999999999997 455553 234443 4443 443322 344555554332000 01111
Q ss_pred --chHHHHHHHH--CCCcEEEEEeCCCC
Q 041067 251 --PFIDLIFRRL--SRMKVLIVFDDVTC 274 (770)
Q Consensus 251 --~~~~~l~~~L--~~kr~LlVLDdv~~ 274 (770)
...-.+-+++ +++.+|+++||+..
T Consensus 238 a~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 238 APYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 1111233333 57999999999844
No 488
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.82 E-value=0.14 Score=50.11 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q 041067 187 SLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 187 vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
+++|+|..|.|||||.+.++.-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999864
No 489
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.82 E-value=0.15 Score=50.42 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFD 207 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~ 207 (770)
.+++|+|..|.|||||.+.++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999875
No 490
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.74 E-value=0.14 Score=50.70 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
.+++|+|..|.|||||++.++.-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999998753
No 491
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.71 E-value=0.17 Score=51.56 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=22.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
.+++|+|..|.|||||++.+..-+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 479999999999999999999876
No 492
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.71 E-value=0.2 Score=47.12 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHH
Q 041067 184 DVYSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3557999999999999999998764
No 493
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.64 E-value=0.15 Score=50.87 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFD 207 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~ 207 (770)
.+++|+|..|.|||||.+.++-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999999875
No 494
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.58 E-value=0.17 Score=47.37 Aligned_cols=23 Identities=30% Similarity=0.716 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
-.|+++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999864
No 495
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.52 E-value=0.15 Score=50.96 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
.+++|+|..|.|||||.+.++.-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 37999999999999999999754
No 496
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.49 E-value=0.22 Score=46.56 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHH
Q 041067 185 VYSLGIWGIGGIGKTTIARAIFDK 208 (770)
Q Consensus 185 ~~vv~I~G~gGiGKTtLA~~~~~~ 208 (770)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999863
No 497
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.45 E-value=0.34 Score=46.36 Aligned_cols=30 Identities=23% Similarity=0.446 Sum_probs=25.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhCCCCc
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKISGDFEG 215 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 215 (770)
..|+|-|.-|+||||+++.+++.+...++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v 32 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCE
Confidence 358899999999999999999998765543
No 498
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=89.45 E-value=0.26 Score=48.54 Aligned_cols=33 Identities=30% Similarity=0.632 Sum_probs=25.7
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhCCCCceEEEE
Q 041067 188 LGIWGIGGIGKTTIARAIFDKISGDFEGSCFLE 220 (770)
Q Consensus 188 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 220 (770)
|+|.|-||+||||+|..++..+...=..+..++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 667999999999999999998776534444444
No 499
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.44 E-value=0.2 Score=48.65 Aligned_cols=24 Identities=38% Similarity=0.397 Sum_probs=21.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 041067 186 YSLGIWGIGGIGKTTIARAIFDKI 209 (770)
Q Consensus 186 ~vv~I~G~gGiGKTtLA~~~~~~~ 209 (770)
-.+||.|++|+||||+|+.+..++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999875
No 500
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.44 E-value=0.17 Score=53.99 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=25.5
Q ss_pred HHHhhcCCCCCeEEEEEEecCCCcHHHHHHHHHH
Q 041067 174 IESILGVESKDVYSLGIWGIGGIGKTTIARAIFD 207 (770)
Q Consensus 174 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 207 (770)
+.+.|..-.....+++|+|..|+|||||.+.+..
T Consensus 58 i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 58 ISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 3444432223456899999999999999999986
Done!