BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041071
(535 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 86/196 (43%), Gaps = 35/196 (17%)
Query: 15 LKKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRN-LTTLPITIGNLE 73
L +FPD + LQ +D + ELP + + +GL +L L RN L LP +I +L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTL--ARNPLRALPASIASLN 150
Query: 74 CLQTLVLSGCSKIVKFPETVISVE---------DLSELFLDRTSITEVPSSI-------- 116
L+ L + C ++ + PE + S + +L L L+ T I +P+SI
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKS 210
Query: 117 ---------------ELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVP 161
L KL+ L+L C +L P G LK L L C L +P
Sbjct: 211 LKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270
Query: 162 ETLRQIESLEKLDISG 177
+ ++ LEKLD+ G
Sbjct: 271 LDIHRLTQLEKLDLRG 286
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 112/259 (43%), Gaps = 42/259 (16%)
Query: 86 IVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVR-LPSSINGLT 144
+ +FP+ + L +D + E+P + + L+ L L R+ +R LP+SI L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTL--ARNPLRALPASIASLN 150
Query: 145 SLKTLNLSGCFKLENVPETLRQIES---------LEKLDISGTAIRQPLSSIFLMKNLKE 195
L+ L++ C +L +PE L ++ L+ L + T IR +SI ++NLK
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKS 210
Query: 196 LSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAI 255
L R SP SA ++ L L +LD+ C
Sbjct: 211 LKIRN---SPLSA---------------------LGPAIHHLPKLEELDLRGCTALRN-Y 245
Query: 256 PSSIGDLCSLEELHLSG-NNFFTLPASIYRLSSLLGIDLKECKMLQNLPRLPASIHWISL 314
P G L+ L L +N TLP I+RL+ L +DL+ C NL RLP+ I +
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV---NLSRLPSLIAQLPA 302
Query: 315 NGCVSLETLSDVLNLNEHQ 333
N C+ L L++H+
Sbjct: 303 N-CIILVPPHLQAQLDQHR 320
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 131/329 (39%), Gaps = 52/329 (15%)
Query: 28 LQELRVDGTDIK-ELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKI 86
LQEL + ++P ++ S LVSL+L T+P ++G+L L+ L L
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 87 VKFPETVISVEDLSELFLDRTSIT-EVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTS 145
+ P+ ++ V+ L L LD +T E+PS + T L W++L++ R +P I L +
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 146 LKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLSSIFL---------------- 189
L L LS N+P L SL LD++ + +
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 572
Query: 190 --MKN-----------------------LKELSCRG-------CKGSPSSASWFLRFPIN 217
+KN L LS R G +S ++ +
Sbjct: 573 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 632
Query: 218 LMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNF-F 276
+ S N ++ P + + L L++ D+ G+IP +GDL L L LS N
Sbjct: 633 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI-SGSIPDEVGDLRGLNILDLSSNKLDG 691
Query: 277 TLPASIYRLSSLLGIDLKECKMLQNLPRL 305
+P ++ L+ L IDL + +P +
Sbjct: 692 RIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 131/329 (39%), Gaps = 52/329 (15%)
Query: 28 LQELRVDGTDIK-ELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKI 86
LQEL + ++P ++ S LVSL+L T+P ++G+L L+ L L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 87 VKFPETVISVEDLSELFLDRTSIT-EVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTS 145
+ P+ ++ V+ L L LD +T E+PS + T L W++L++ R +P I L +
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 146 LKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLSSIFL---------------- 189
L L LS N+P L SL LD++ + +
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575
Query: 190 --MKN-----------------------LKELSCRG-------CKGSPSSASWFLRFPIN 217
+KN L LS R G +S ++ +
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635
Query: 218 LMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNF-F 276
+ S N ++ P + + L L++ D+ G+IP +GDL L L LS N
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI-SGSIPDEVGDLRGLNILDLSSNKLDG 694
Query: 277 TLPASIYRLSSLLGIDLKECKMLQNLPRL 305
+P ++ L+ L IDL + +P +
Sbjct: 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 91/184 (49%), Gaps = 15/184 (8%)
Query: 142 GLTSLKTLNLS--GCFKLENVPETLRQIESLEKLDISGTAIRQPLS-SIFL-MKNLKELS 197
G TSLK L+LS G + + +E LE LD + ++Q S+FL ++NL L
Sbjct: 371 GTTSLKYLDLSFNGVITMSS---NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427
Query: 198 CRGCKGSPSSASWFLRFP-INLMRWSSNPVALSF-PSSLSGLCSLTKLDISDCDLGEGAI 255
+ F + +++ + N +F P + L +LT LD+S C L E
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLS 486
Query: 256 PSSIGDLCSLEELHLSGNNFFTLPASIYR-LSSLLGIDLKECKML----QNLPRLPASIH 310
P++ L SL+ L++S NNFF+L Y+ L+SL +D ++ Q L P+S+
Sbjct: 487 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 546
Query: 311 WISL 314
+++L
Sbjct: 547 FLNL 550
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 90/184 (48%), Gaps = 15/184 (8%)
Query: 142 GLTSLKTLNLS--GCFKLENVPETLRQIESLEKLDISGTAIRQPLS-SIFL-MKNLKELS 197
G SLK L+LS G + + +E LE LD + ++Q S+FL ++NL L
Sbjct: 395 GTISLKYLDLSFNGVITMSS---NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 451
Query: 198 CRGCKGSPSSASWFLRFP-INLMRWSSNPVALSF-PSSLSGLCSLTKLDISDCDLGEGAI 255
+ F + +++ + N +F P + L +LT LD+S C L E
Sbjct: 452 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLS 510
Query: 256 PSSIGDLCSLEELHLSGNNFFTLPASIYR-LSSLLGIDLKECKML----QNLPRLPASIH 310
P++ L SL+ L++S NNFF+L Y+ L+SL +D ++ Q L P+S+
Sbjct: 511 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 570
Query: 311 WISL 314
+++L
Sbjct: 571 FLNL 574
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 91/184 (49%), Gaps = 15/184 (8%)
Query: 142 GLTSLKTLNLS--GCFKLENVPETLRQIESLEKLDISGTAIRQPLS-SIFL-MKNLKELS 197
G TSLK L+LS G + + +E LE LD + ++Q S+FL ++NL L
Sbjct: 76 GTTSLKYLDLSFNGVITMSS---NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 132
Query: 198 CRGCKGSPSSASWFLRFP-INLMRWSSNPVALSF-PSSLSGLCSLTKLDISDCDLGEGAI 255
+ F + +++ + N +F P + L +LT LD+S C L E
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLS 191
Query: 256 PSSIGDLCSLEELHLSGNNFFTLPASIYR-LSSLLGIDLKECKML----QNLPRLPASIH 310
P++ L SL+ L++S NNFF+L Y+ L+SL +D ++ Q L P+S+
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 251
Query: 311 WISL 314
+++L
Sbjct: 252 FLNL 255
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 99/212 (46%), Gaps = 10/212 (4%)
Query: 98 DLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLV-RLPSSINGLTSLKTLNLSGCFK 156
DLS L L + +PSS+ L L +L + +LV +P +I LT L L ++
Sbjct: 56 DLSGLNLPKP--YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113
Query: 157 LENVPETLRQIESLEKLDISGTAIRQPLS-SIFLMKNLKELSCRGCKGS---PSSASWFL 212
+P+ L QI++L LD S A+ L SI + NL ++ G + S P S F
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173
Query: 213 RFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSG 272
+ M S N + P + + L +L +D+S ++ EG G + +++HL+
Sbjct: 174 KL-FTSMTISRNRLTGKIPPTFANL-NLAFVDLSR-NMLEGDASVLFGSDKNTQKIHLAK 230
Query: 273 NNFFTLPASIYRLSSLLGIDLKECKMLQNLPR 304
N+ + +L G+DL+ ++ LP+
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 11/181 (6%)
Query: 142 GLTSLKTLNLS--GCFKLENVPETLRQIESLEKLDISGTAIRQPLS-SIFL-MKNLKELS 197
G TSLK L+LS G + + +E LE LD + ++Q S+FL ++NL L
Sbjct: 371 GTTSLKYLDLSFNGVITMSS---NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427
Query: 198 CRGCKGSPSSASWFLRFP-INLMRWSSNPVALSF-PSSLSGLCSLTKLDISDCDLGEGAI 255
+ F + +++ + N +F P + L +LT LD+S C L E
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLS 486
Query: 256 PSSIGDLCSLEELHLSGNNFFTLPASIY-RLSSLLGIDLKECKMLQNLPRLPASIHWISL 314
P++ L SL+ L+++ N ++P I+ RL+SL I L + PR+ W++
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 546
Query: 315 N 315
N
Sbjct: 547 N 547
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 117/254 (46%), Gaps = 39/254 (15%)
Query: 37 DIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSG--CSKIVKFPETVI 94
++ E+P SI + + ++L + + T T +L L+ L LS KI +
Sbjct: 25 ELAEVPASIPVNTRYLNLQENSIQVIRT--DTFKHLRHLEILQLSKNLVRKIEVGAFNGL 82
Query: 95 SVEDLSELFLDRTSITEVPS-SIELLTKLQ--WLNLNDCRSLVRLPS-SINGLTSLKTLN 150
+ ELF +R +T VP+ + E L+KL+ WL N S+ PS + N + SL+ L+
Sbjct: 83 PSLNTLELFDNR--LTTVPTQAFEYLSKLRELWLRNNPIESI---PSYAFNRVPSLRRLD 137
Query: 151 LSGCFKLENVPET-LRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSAS 209
L +LE + E + +L L++ G + + ++ + L+EL G +
Sbjct: 138 LGELKRLEYISEAAFEGLVNLRYLNL-GMCNLKDIPNLTALVRLEELELSGNR------- 189
Query: 210 WFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELH 269
++L+R P S GL SL KL + + ++ DL SLEEL+
Sbjct: 190 ------LDLIR----------PGSFQGLTSLRKLWLMHAQVATIE-RNAFDDLKSLEELN 232
Query: 270 LSGNNFFTLPASIY 283
LS NN +LP ++
Sbjct: 233 LSHNNLMSLPHDLF 246
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 35/188 (18%)
Query: 101 ELFLDRTSITEVPS-SIELLTKLQ--WLNLNDCRSLVRLPS-SINGLTSLKTLNLSGCFK 156
ELF +R +T VP+ + E L+KL+ WL N S+ PS + N + SL+ L+L +
Sbjct: 89 ELFDNR--LTTVPTQAFEYLSKLRELWLRNNPIESI---PSYAFNRVPSLRRLDLGELKR 143
Query: 157 LENVPET-LRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFP 215
LE + E + +L L++ G + + ++ + L+EL G +
Sbjct: 144 LEYISEAAFEGLVNLRYLNL-GMCNLKDIPNLTALVRLEELELSGNR------------- 189
Query: 216 INLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNF 275
++L+R P S GL SL KL + + ++ DL SLEEL+LS NN
Sbjct: 190 LDLIR----------PGSFQGLTSLRKLWLMHAQVATIE-RNAFDDLKSLEELNLSHNNL 238
Query: 276 FTLPASIY 283
+LP ++
Sbjct: 239 MSLPHDLF 246
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 10/161 (6%)
Query: 138 SSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELS 197
S+++GLTSL+ LN S + P L + +LE+LDIS + S I ++ L L
Sbjct: 145 SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKV----SDISVLAKLTNLE 198
Query: 198 CRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPS 257
+ S L NL S N L +L+ L +LT LD+++ + A
Sbjct: 199 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA--- 255
Query: 258 SIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLKECKM 298
+ L L EL L N + + + L++L ++L E ++
Sbjct: 256 PLSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQL 295
>pdb|2QUF|A Chain A, Crystal Structure Of Transcription Factor Axxa-pf0095 From
Pyrococcus Furiosus
pdb|2QUF|B Chain B, Crystal Structure Of Transcription Factor Axxa-pf0095 From
Pyrococcus Furiosus
Length = 232
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 16/109 (14%)
Query: 243 LDISDCDLGEGAI--------PSSIGDLCSL-----EELHLSGNNFFTLPASIYRLSSLL 289
LD+ D +L + I PS++ ++ + +EL F T+ + YR S +
Sbjct: 94 LDLGDAELRDFEISLSGLDTEPSTLKEMITDFIKANKELEKVLEAFKTIES--YRSSLMR 151
Query: 290 GIDLKECKMLQNLPRLPASIHWISLNGCVSLETLSDVLNLNEHQLPHLI 338
I K + ++ +L A +H++ LNG ++E LSD LNL E ++ I
Sbjct: 152 KIKEAYLKEIGDMTQL-AILHYLLLNGRATVEELSDRLNLKEREVREKI 199
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 11/161 (6%)
Query: 138 SSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELS 197
S+++GLTSL+ LN G + P L + +LE+LDIS + S I ++ L L
Sbjct: 145 SALSGLTSLQQLNF-GNQVTDLKP--LANLTTLERLDISSNKV----SDISVLAKLTNLE 197
Query: 198 CRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPS 257
+ S L NL S N L +L+ L +LT LD+++ + A
Sbjct: 198 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA--- 254
Query: 258 SIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLKECKM 298
+ L L EL L N + + + L++L ++L E ++
Sbjct: 255 PLSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQL 294
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 11/161 (6%)
Query: 138 SSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELS 197
S+++GLTSL+ LN G + P L + +LE+LDIS + S I ++ L L
Sbjct: 145 SALSGLTSLQQLNF-GNQVTDLKP--LANLTTLERLDISSNKV----SDISVLAKLTNLE 197
Query: 198 CRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPS 257
+ S L NL S N L +L+ L +LT LD+++ + A
Sbjct: 198 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA--- 254
Query: 258 SIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLKECKM 298
+ L L EL L N + + + L++L ++L E ++
Sbjct: 255 PLSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQL 294
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 78/170 (45%), Gaps = 22/170 (12%)
Query: 13 SKLKKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNL 72
++L P + G LQEL V + LP L S L L + R LT+LP L
Sbjct: 171 NQLTSLPMLPSG---LQELSVSDNQLASLPT---LPSELYKLWAYNNR-LTSLPALPSGL 223
Query: 73 ECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRS 132
+ L++SG +++ P + +L EL + +T +P + L+L+ R+
Sbjct: 224 ---KELIVSG-NRLTSLP---VLPSELKELMVSGNRLTSLP-----MLPSGLLSLSVYRN 271
Query: 133 -LVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIR 181
L RLP S+ L+S T+NL G E + LR+I S SG IR
Sbjct: 272 QLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAP--GYSGPIIR 319
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 35 GTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVI 94
G +KE+P I L + + LN + +++ + G L L L L P
Sbjct: 17 GRGLKEIPRDIPLHTTELLLNDNELGRISSDGL-FGRLPHLVKLELKRNQLTGIEPNAFE 75
Query: 95 SVEDLSELFLDRTSITEVPSSIEL-LTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLS 152
+ EL L I E+ + + L L +L+ LNL D + +P S L SL +LNL+
Sbjct: 76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 85 KIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLT 144
+I + + L+ L+L+ S+TE+P+ I+ L+ L+ L+L+ R L LP+ +
Sbjct: 235 QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCF 293
Query: 145 SLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRG 200
LK + +P + +L+ L + G PL FL K L E S G
Sbjct: 294 QLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGN----PLEKQFL-KILTEKSVTG 343
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 243 LDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLKECKMLQNL 302
LD+S+ + I ++I L L+L+GN+ LPA I LS+L +DL + L
Sbjct: 229 LDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR----L 282
Query: 303 PRLPASI 309
LPA +
Sbjct: 283 TSLPAEL 289
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Query: 74 CLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSL 133
CL T+V + P+ + D++EL+LD T VP + L ++L++ R
Sbjct: 10 CLDTVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS 67
Query: 134 VRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAI 180
S + +T L TL LS P T ++SL L + G I
Sbjct: 68 TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
>pdb|2QLZ|A Chain A, Crystal Structure Of Transcription Factor Pf0095 From
Pyrococcus Furiosus
pdb|2QLZ|B Chain B, Crystal Structure Of Transcription Factor Pf0095 From
Pyrococcus Furiosus
pdb|2QLZ|C Chain C, Crystal Structure Of Transcription Factor Pf0095 From
Pyrococcus Furiosus
pdb|2QLZ|D Chain D, Crystal Structure Of Transcription Factor Pf0095 From
Pyrococcus Furiosus
Length = 232
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 307 ASIHWISLNGCVSLETLSDVLNLNEHQLPHLI 338
A +H++ LNG ++E LSD LNL E ++ I
Sbjct: 168 AILHYLLLNGRATVEELSDRLNLKEREVREKI 199
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 89/231 (38%), Gaps = 30/231 (12%)
Query: 24 GMECLQELRV-DGTDIKEL-PVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLS 81
G+ L++L + D ++ + P + + L +L+L C P L LQ L L
Sbjct: 77 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 136
Query: 82 GCSKIVKFPETVISVEDLSELFLDRTSITEVPS-SIELLTKLQWLNLNDCRSLVRLPSSI 140
+ +T + +L+ LFL I+ VP + L L L L+ R P +
Sbjct: 137 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 196
Query: 141 NGLTSLKTLNLSGCFKLENVP-ETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCR 199
L L TL L L +P E L + +L+ +L N C
Sbjct: 197 RDLGRLMTLYLFA-NNLSALPTEALAPLRALQ----------------YLRLNDNPWVC- 238
Query: 200 GCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSG--LCSLTKLDISDC 248
C+ P A W +F R SS+ V S P L+G L L D+ C
Sbjct: 239 DCRARPLWA-WLQKF-----RGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 283
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 222 SSNPVALSFPSSLSGLCSLTKLDISDCDLGE-GAIPSSIGDLCSLEELHLSGNNFFT--L 278
+ NP+ P S SGL SL L + L + P IG L +L++L+++ N + L
Sbjct: 83 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKL 140
Query: 279 PASIYRLSSLLGIDL 293
PA L++L+ +DL
Sbjct: 141 PAYFSNLTNLVHVDL 155
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 89/231 (38%), Gaps = 30/231 (12%)
Query: 24 GMECLQELRV-DGTDIKEL-PVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLS 81
G+ L++L + D ++ + P + + L +L+L C P L LQ L L
Sbjct: 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137
Query: 82 GCSKIVKFPETVISVEDLSELFLDRTSITEVPS-SIELLTKLQWLNLNDCRSLVRLPSSI 140
+ +T + +L+ LFL I+ VP + L L L L+ R P +
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197
Query: 141 NGLTSLKTLNLSGCFKLENVP-ETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCR 199
L L TL L L +P E L + +L+ +L N C
Sbjct: 198 RDLGRLMTLYLFA-NNLSALPTEALAPLRALQ----------------YLRLNDNPWVC- 239
Query: 200 GCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSG--LCSLTKLDISDC 248
C+ P A W +F R SS+ V S P L+G L L D+ C
Sbjct: 240 DCRARPLWA-WLQKF-----RGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 222 SSNPVALSFPSSLSGLCSLTKLDISDCDLGE-GAIPSSIGDLCSLEELHLSGNNFFT--L 278
+ NP+ P S SGL SL L + L + P IG L +L++L+++ N + L
Sbjct: 88 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKL 145
Query: 279 PASIYRLSSLLGIDL 293
PA L++L+ +DL
Sbjct: 146 PAYFSNLTNLVHVDL 160
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 238 CSLTKLDISDCDLGE---GAIPSSIGDLCSLEELHLSGN 273
C + KL + +C L E G +PS++ L +L ELHLS N
Sbjct: 81 CKIQKLSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDN 119
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 31/149 (20%)
Query: 254 AIPSSIGD-LCSLEELHLSGNNFFTLPASIY-RLSSLLGIDLKECKMLQNLPRLPASIHW 311
++P+ + D L SL +L+L GN +LP ++ +L+SL ++L LQ+LP
Sbjct: 42 SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST-NQLQSLP-------- 92
Query: 312 ISLNGCVSLETLSDVLNLNEHQLPHLILNCVDCLKLAGNYDLALSLLK------------ 359
NG T L LN +QL L D L + L + LK
Sbjct: 93 ---NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Query: 360 -EYIKNSEGPWRDFCIVVPG-SEIPEWFE 386
+YI + PW C PG + EW
Sbjct: 150 LQYIWLHDNPWDCTC---PGIRYLSEWIN 175
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 231 PSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPASIYR 284
P++ GL L L + C L E P L +L+ L+L NN LP + +R
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNNLQALPDNTFR 149
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 27/172 (15%)
Query: 28 LQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIV 87
LQEL + T + ELP + +S L L L + I+ N L L + G +K +
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339
Query: 88 KFPETVI-SVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSL 146
+ + ++E+L EL L I +DC +L + L+ L
Sbjct: 340 ELGTGCLENLENLRELDLSHDDIET----------------SDCCNL-----QLRNLSHL 378
Query: 147 KTLNLSGCFKLENVPETLRQIESLEKLDISGTAIR-----QPLSSIFLMKNL 193
++LNLS L E ++ LE LD++ T ++ P ++ L+K L
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430
>pdb|3R3L|A Chain A, Structure Of Np Protein From Lassa Av Strain
pdb|3R3L|B Chain B, Structure Of Np Protein From Lassa Av Strain
pdb|3R3L|C Chain C, Structure Of Np Protein From Lassa Av Strain
Length = 582
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 85 KIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLT 144
++VK + ++ D SE+ S+++ L + Q + +D + L L ++N L
Sbjct: 30 QVVKDAQALLHGLDFSEV-----------SNVQRLMRKQRRDDSDLKRLRDLNQAVNNLV 78
Query: 145 SLKTLNLSGCFKLENVP--ETLRQIESLEKLDISGTAIRQPLSSIFLMKNL 193
LK+ ++ + + L LEKL T +PLSS M NL
Sbjct: 79 ELKSTQQKSVLRVGTLSSDDLLTLAADLEKLKSKVTRTERPLSSGVYMGNL 129
>pdb|2GRM|A Chain A, Crystal Structure Of PrgxICF10 COMPLEX
pdb|2GRM|B Chain B, Crystal Structure Of PrgxICF10 COMPLEX
pdb|2GRM|C Chain C, Crystal Structure Of PrgxICF10 COMPLEX
Length = 317
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 287 SLLGIDLKECKMLQNLPRLPASIHWISLNGCVSLET--LSDVLN-LNEHQLPHLI--LNC 341
S++ +LKE + N +I IS+NGC LE L + L + + + +N
Sbjct: 201 SIMNRNLKEAQYYINQFEHLKTIKNISINGCYDLEINYLKQIYQFLTDKNIDSYLNAVNI 260
Query: 342 VDCLKLAGNYDLALSLLKEYIKNSEGPWRDFCIVVPGSEIPEWFE 386
++ K+ G D+ SL++E K S P E+ ++E
Sbjct: 261 INIFKIIGKEDIHRSLVEELTKISAKEK-----FTPPKEVTMYYE 300
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 99 LSELFLDRTSITEVPSSIELLTKLQ--WLNLNDCRSLVRLPSSINGLTSLKTLNLSGCF- 155
+ EL L + +PS IE + L+ LN N L ++ ++ SL+ L + G
Sbjct: 279 VQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAA--SFPSLRDLYIKGNMR 336
Query: 156 KLENVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKEL 196
KL+ L ++E+L+KLD+S + I +KNL+ L
Sbjct: 337 KLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHL 377
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 98 DLSELFLDRTSITEVP-SSIELLTKLQWLNLNDCRSLVRLPSSI-NGLTSLKTLNLSGCF 155
D +L L T + + ++ LTKL WLNL D L L + + + LT L TL L+
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNL-DYNQLQTLSAGVFDDLTELGTLGLAN-N 93
Query: 156 KLENVP-ETLRQIESLEKLDISGTAIRQPLSSIF-LMKNLKEL 196
+L ++P + L+KL + G ++ S +F + LKEL
Sbjct: 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 98 DLSELFLDRTSITEVP-SSIELLTKLQWLNLNDCRSLVRLPSSI-NGLTSLKTLNLSGCF 155
D +L L T + + ++ LTKL WLNL D L L + + + LT L TL L+
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNL-DYNQLQTLSAGVFDDLTELGTLGLAN-N 93
Query: 156 KLENVP-ETLRQIESLEKLDISGTAIRQPLSSIF-LMKNLKEL 196
+L ++P + L+KL + G ++ S +F + LKEL
Sbjct: 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 80/203 (39%), Gaps = 46/203 (22%)
Query: 3 SLKTLVLSGC----SKLKKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKD 58
S+ TL LSG S K+F D + G + +Q L L S + S N KD
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTK-IQSLI--------LSNSYNMGSSFGHTNFKD 263
Query: 59 CRNLTTLPITIGNLEC--LQTLVLSGCSKIVKFPETVIS-VEDLSELFLDRTSITEVPSS 115
N T LE ++T LS SKI ++V S DL +L L + I ++ +
Sbjct: 264 PDNFT-----FKGLEASGVKTCDLSK-SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317
Query: 116 IELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDI 175
+ GLT L LNLS F ++ LE LD+
Sbjct: 318 -----------------------AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354
Query: 176 SGTAIRQPLSSIFL-MKNLKELS 197
S IR FL + NLKEL+
Sbjct: 355 SYNHIRALGDQSFLGLPNLKELA 377
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 85/195 (43%), Gaps = 37/195 (18%)
Query: 96 VEDLSELFLDRTSITEVPS-SIELLTKLQ--WLNLNDCRSLVRLPS-SINGLTSLKTLNL 151
+ L+ L L +T +PS + E L+KL+ WL N S+ PS + N + SL L+L
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI---PSYAFNRVPSLMRLDL 178
Query: 152 SGCFKLENVPE-TLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASW 210
KLE + E + +L+ L++ I+ + ++ + L+EL G
Sbjct: 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSG---------- 227
Query: 211 FLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDI--SDCDLGEGAIPSSIGDLCSLEEL 268
N P S GL SL KL + S L E ++ L SL EL
Sbjct: 228 -------------NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER---NAFDGLASLVEL 271
Query: 269 HLSGNNFFTLPASIY 283
+L+ NN +LP ++
Sbjct: 272 NLAHNNLSSLPHDLF 286
>pdb|4H63|H Chain H, Structure Of The Schizosaccharomyces Pombe Mediator Head
Module
Length = 200
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 380 EIPEWFEYQNNEGSSITISTPPKTYKNSKLEAYHPGFGWHLFRKQFGQAMSDHLFLYYLK 439
E+ EW E + +IS+ PK K +AY W R F + ++ + ++
Sbjct: 102 EVEEW-EANTLQEYEASISSQPK--KKEANDAYQKDQLWDQARIIFMEERENYSWFDFVT 158
Query: 440 RERISKVEFSSRSGLELKRC 459
R + S+ EF S+ LE+ R
Sbjct: 159 RRQESEGEFVSQRQLEIDRA 178
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 54 LNLKD----CRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVIS-VEDLSELFLDRTS 108
+NLK+ L LP+ + + T++ G +++ P V + L ELF+
Sbjct: 64 INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK 123
Query: 109 ITEVPSSIELLTKLQWLNLNDCRSLVRLP-SSINGLTSLKTLNLSG 153
+TE+P IE LT L L L D L +P + + L+SL L G
Sbjct: 124 LTELPRGIERLTHLTHLAL-DQNQLKSIPHGAFDRLSSLTHAYLFG 168
>pdb|3EEI|A Chain A, Crystal Structure Of 5'-MethylthioadenosineS-
Adenosylhomocysteine Nucleosidase From Neisseria
Meningitidis In Complex With Methylthio-Immucillin-A
pdb|3EEI|B Chain B, Crystal Structure Of 5'-MethylthioadenosineS-
Adenosylhomocysteine Nucleosidase From Neisseria
Meningitidis In Complex With Methylthio-Immucillin-A
Length = 233
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 428 AMSDHLFLYYLKRERISKVEFSSRSGLELKRCGLHPIYVHEG-DKFNQTIGPVWNLNEFG 486
AM + L E + V F S E + G + G K N + W + EF
Sbjct: 11 AMEQEIELLREMMENVKAVSFGRFSAYEGELAGKRMVLALSGIGKVNAAVATAWIIREFA 70
Query: 487 HDCSGSTTSS 496
DC +T S+
Sbjct: 71 ADCVINTGSA 80
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 75 LQTLVL--SGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCR 131
LQTL+L + + + K ET++++++L+ + + + S +P + + K+++LNL+ R
Sbjct: 363 LQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTR 421
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,029,723
Number of Sequences: 62578
Number of extensions: 666974
Number of successful extensions: 1711
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 1596
Number of HSP's gapped (non-prelim): 139
length of query: 535
length of database: 14,973,337
effective HSP length: 103
effective length of query: 432
effective length of database: 8,527,803
effective search space: 3684010896
effective search space used: 3684010896
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)