Query 041071
Match_columns 535
No_of_seqs 460 out of 3151
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 03:31:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 9.5E-38 2.1E-42 362.9 35.4 447 1-471 557-1101(1153)
2 PLN00113 leucine-rich repeat r 100.0 2.4E-30 5.3E-35 299.5 22.1 294 3-297 141-439 (968)
3 PLN00113 leucine-rich repeat r 100.0 9.7E-30 2.1E-34 294.5 20.7 323 1-324 235-588 (968)
4 KOG0444 Cytoskeletal regulator 99.9 3.1E-29 6.7E-34 254.5 -4.1 319 4-327 34-382 (1255)
5 KOG0444 Cytoskeletal regulator 99.9 3.4E-27 7.3E-32 239.8 -2.4 299 1-304 77-380 (1255)
6 PLN03210 Resistant to P. syrin 99.9 2.1E-23 4.5E-28 243.2 24.9 329 7-349 539-908 (1153)
7 KOG4194 Membrane glycoprotein 99.9 1E-24 2.2E-29 220.7 3.3 298 1-300 101-430 (873)
8 KOG4194 Membrane glycoprotein 99.9 3.1E-24 6.8E-29 217.2 3.4 291 5-298 81-377 (873)
9 KOG0472 Leucine-rich repeat pr 99.9 4E-25 8.7E-30 215.0 -6.6 113 86-202 195-308 (565)
10 KOG0472 Leucine-rich repeat pr 99.8 3E-24 6.6E-29 208.9 -10.7 264 26-298 45-309 (565)
11 KOG0618 Serine/threonine phosp 99.8 2.7E-22 5.9E-27 213.1 -4.7 287 3-297 46-441 (1081)
12 KOG0618 Serine/threonine phosp 99.8 1.1E-21 2.5E-26 208.4 -5.4 311 2-319 68-488 (1081)
13 PRK15387 E3 ubiquitin-protein 99.8 1.2E-18 2.6E-23 190.6 17.4 259 4-302 203-461 (788)
14 PRK15370 E3 ubiquitin-protein 99.8 3.7E-18 7.9E-23 187.8 13.4 244 4-298 180-427 (754)
15 PRK15370 E3 ubiquitin-protein 99.7 5.8E-17 1.3E-21 178.4 12.5 228 26-304 178-405 (754)
16 PRK15387 E3 ubiquitin-protein 99.7 1.5E-16 3.3E-21 174.2 15.1 243 2-282 222-465 (788)
17 cd00116 LRR_RI Leucine-rich re 99.6 1.2E-17 2.6E-22 168.9 -1.1 273 6-296 2-317 (319)
18 KOG0617 Ras suppressor protein 99.6 1.6E-17 3.4E-22 144.9 -4.6 170 16-190 24-195 (264)
19 KOG0617 Ras suppressor protein 99.6 7E-17 1.5E-21 140.9 -3.2 162 2-167 33-195 (264)
20 cd00116 LRR_RI Leucine-rich re 99.5 8E-16 1.7E-20 155.5 -0.5 251 30-299 2-291 (319)
21 KOG4237 Extracellular matrix p 99.4 7.4E-15 1.6E-19 143.7 -2.1 139 14-155 57-199 (498)
22 KOG4237 Extracellular matrix p 99.4 1.2E-14 2.5E-19 142.3 -4.6 283 34-329 54-357 (498)
23 KOG4658 Apoptotic ATPase [Sign 99.3 3.3E-12 7.3E-17 143.1 9.4 187 18-206 516-732 (889)
24 KOG4658 Apoptotic ATPase [Sign 99.2 2.7E-12 5.9E-17 143.9 3.5 227 2-256 545-788 (889)
25 COG4886 Leucine-rich repeat (L 99.2 6.7E-11 1.4E-15 123.5 8.8 197 77-303 97-294 (394)
26 KOG0532 Leucine-rich repeat (L 99.1 3.2E-12 6.9E-17 130.7 -3.1 213 75-319 77-292 (722)
27 COG4886 Leucine-rich repeat (L 99.1 1.3E-10 2.7E-15 121.4 7.7 194 7-206 98-292 (394)
28 KOG3207 Beta-tubulin folding c 99.1 2.9E-11 6.2E-16 120.3 2.0 206 71-299 119-339 (505)
29 KOG1259 Nischarin, modulator o 99.0 5.9E-11 1.3E-15 112.7 1.3 223 45-298 178-411 (490)
30 KOG3207 Beta-tubulin folding c 99.0 7.3E-11 1.6E-15 117.5 -0.1 208 46-276 118-339 (505)
31 KOG1909 Ran GTPase-activating 99.0 2.7E-11 5.8E-16 117.5 -4.0 246 22-298 26-310 (382)
32 KOG0532 Leucine-rich repeat (L 98.9 5.9E-11 1.3E-15 121.5 -3.5 189 6-201 79-270 (722)
33 KOG1259 Nischarin, modulator o 98.8 7.5E-10 1.6E-14 105.3 0.8 176 24-204 212-412 (490)
34 PF14580 LRR_9: Leucine-rich r 98.8 3.8E-09 8.1E-14 96.1 3.7 112 15-131 9-124 (175)
35 KOG1909 Ran GTPase-activating 98.7 5.1E-10 1.1E-14 108.7 -4.0 247 2-276 30-311 (382)
36 PF14580 LRR_9: Leucine-rich r 98.7 8.6E-09 1.9E-13 93.8 4.0 60 237-298 63-125 (175)
37 KOG2120 SCF ubiquitin ligase, 98.7 2E-10 4.4E-15 109.1 -7.1 156 98-273 186-348 (419)
38 KOG4341 F-box protein containi 98.6 9.2E-10 2E-14 109.2 -6.5 278 3-301 139-441 (483)
39 KOG2120 SCF ubiquitin ligase, 98.6 1.8E-09 3.9E-14 102.7 -4.8 179 27-248 186-373 (419)
40 PRK15386 type III secretion pr 98.6 3E-07 6.4E-12 93.7 10.5 61 96-161 51-111 (426)
41 KOG4341 F-box protein containi 98.6 3.1E-09 6.8E-14 105.5 -4.3 271 26-324 138-432 (483)
42 PRK15386 type III secretion pr 98.5 3.5E-07 7.5E-12 93.2 9.6 156 143-348 51-214 (426)
43 PLN03150 hypothetical protein; 98.5 2.1E-07 4.6E-12 102.4 8.0 111 27-137 419-532 (623)
44 PLN03150 hypothetical protein; 98.5 2.1E-07 4.5E-12 102.4 7.7 108 74-181 419-528 (623)
45 KOG0531 Protein phosphatase 1, 98.3 1.1E-07 2.3E-12 100.0 -1.3 242 25-300 71-319 (414)
46 KOG2982 Uncharacterized conser 98.3 5.2E-07 1.1E-11 86.2 3.0 231 72-325 44-286 (418)
47 PF13855 LRR_8: Leucine rich r 98.2 1.1E-06 2.4E-11 65.5 3.6 58 2-59 1-59 (61)
48 PF13855 LRR_8: Leucine rich r 98.2 1.4E-06 3.1E-11 64.9 3.9 59 26-84 1-60 (61)
49 KOG0531 Protein phosphatase 1, 98.2 2.6E-07 5.6E-12 97.0 -1.2 216 48-298 71-289 (414)
50 KOG1859 Leucine-rich repeat pr 98.2 1.1E-08 2.3E-13 107.9 -11.7 131 121-279 165-295 (1096)
51 KOG2982 Uncharacterized conser 97.9 2.5E-06 5.5E-11 81.6 0.8 101 30-130 49-156 (418)
52 KOG1859 Leucine-rich repeat pr 97.8 6.2E-07 1.3E-11 94.9 -6.1 113 85-202 175-290 (1096)
53 PF12799 LRR_4: Leucine Rich r 97.7 2.5E-05 5.4E-10 53.8 2.7 34 264-297 2-35 (44)
54 PF12799 LRR_4: Leucine Rich r 97.6 3.4E-05 7.4E-10 53.1 2.1 40 238-279 1-40 (44)
55 COG5238 RNA1 Ran GTPase-activa 97.6 3E-06 6.6E-11 80.1 -4.4 243 24-298 28-315 (388)
56 KOG3665 ZYG-1-like serine/thre 97.6 3.8E-05 8.1E-10 84.8 3.2 156 119-297 121-286 (699)
57 KOG3665 ZYG-1-like serine/thre 97.5 6.8E-05 1.5E-09 82.8 3.0 125 3-130 123-260 (699)
58 KOG4579 Leucine-rich repeat (L 97.4 1.9E-05 4.2E-10 67.4 -2.2 61 237-299 76-136 (177)
59 KOG1947 Leucine rich repeat pr 97.3 2.7E-05 5.8E-10 83.2 -1.9 212 72-301 187-416 (482)
60 KOG1947 Leucine rich repeat pr 97.3 2E-05 4.3E-10 84.2 -2.9 169 24-202 186-373 (482)
61 KOG4579 Leucine-rich repeat (L 97.2 3.3E-05 7.1E-10 66.0 -2.4 110 74-185 28-140 (177)
62 KOG1644 U2-associated snRNP A' 97.1 0.00077 1.7E-08 61.6 5.3 124 28-154 21-150 (233)
63 COG5238 RNA1 Ran GTPase-activa 97.1 0.00012 2.5E-09 69.6 -0.3 61 238-298 185-254 (388)
64 KOG1644 U2-associated snRNP A' 96.5 0.004 8.7E-08 57.0 4.8 62 234-297 60-124 (233)
65 KOG2739 Leucine-rich acidic nu 96.3 0.0016 3.5E-08 61.9 1.2 83 47-131 41-127 (260)
66 KOG2739 Leucine-rich acidic nu 95.9 0.0045 9.8E-08 58.9 2.2 110 18-130 35-153 (260)
67 KOG2123 Uncharacterized conser 95.4 0.00082 1.8E-08 64.2 -4.7 58 143-203 18-75 (388)
68 PF00560 LRR_1: Leucine Rich R 94.9 0.0086 1.9E-07 34.4 0.3 19 265-283 2-20 (22)
69 PF13306 LRR_5: Leucine rich r 94.8 0.12 2.6E-06 44.1 7.4 60 20-82 6-67 (129)
70 KOG2123 Uncharacterized conser 94.7 0.0018 3.8E-08 62.1 -4.5 78 3-84 20-99 (388)
71 PF00560 LRR_1: Leucine Rich R 94.2 0.021 4.7E-07 32.7 0.9 19 99-117 2-20 (22)
72 PF13504 LRR_7: Leucine rich r 93.8 0.035 7.5E-07 29.7 1.2 16 264-279 2-17 (17)
73 PF13306 LRR_5: Leucine rich r 93.4 0.24 5.3E-06 42.2 6.6 76 2-82 12-90 (129)
74 PF13504 LRR_7: Leucine rich r 91.3 0.12 2.5E-06 27.6 1.2 11 28-38 3-13 (17)
75 smart00370 LRR Leucine-rich re 89.0 0.4 8.7E-06 28.5 2.4 21 262-282 1-21 (26)
76 smart00369 LRR_TYP Leucine-ric 89.0 0.4 8.7E-06 28.5 2.4 21 262-282 1-21 (26)
77 KOG4308 LRR-containing protein 87.0 0.0035 7.6E-08 66.5 -13.0 181 99-298 89-302 (478)
78 KOG4308 LRR-containing protein 85.7 0.0089 1.9E-07 63.5 -10.8 129 75-203 146-302 (478)
79 KOG3864 Uncharacterized conser 84.7 0.094 2E-06 48.3 -3.1 37 169-205 102-139 (221)
80 KOG3864 Uncharacterized conser 84.3 0.27 5.8E-06 45.3 -0.4 79 99-177 103-185 (221)
81 smart00369 LRR_TYP Leucine-ric 82.6 0.96 2.1E-05 26.8 1.7 19 26-44 2-20 (26)
82 smart00370 LRR Leucine-rich re 82.6 0.96 2.1E-05 26.8 1.7 19 26-44 2-20 (26)
83 KOG0473 Leucine-rich repeat pr 82.1 0.046 1E-06 51.3 -6.2 85 24-110 40-124 (326)
84 smart00364 LRR_BAC Leucine-ric 78.8 1.4 3E-05 26.4 1.4 18 263-280 2-19 (26)
85 KOG0473 Leucine-rich repeat pr 77.5 0.045 9.7E-07 51.4 -7.9 87 44-132 37-123 (326)
86 smart00367 LRR_CC Leucine-rich 70.3 3 6.5E-05 24.7 1.5 17 285-301 1-17 (26)
87 smart00365 LRR_SD22 Leucine-ri 60.1 7.6 0.00016 23.2 1.8 16 263-278 2-17 (26)
88 PF13516 LRR_6: Leucine Rich r 56.1 7.1 0.00015 22.4 1.2 13 263-275 2-14 (24)
89 PF07725 LRR_3: Leucine Rich R 51.2 7.9 0.00017 21.6 0.8 19 27-45 1-19 (20)
90 smart00368 LRR_RI Leucine rich 44.7 19 0.00041 21.7 1.8 14 263-276 2-15 (28)
91 KOG3763 mRNA export factor TAP 36.1 18 0.00038 38.7 1.2 13 98-110 271-283 (585)
92 KOG3763 mRNA export factor TAP 32.4 24 0.00053 37.7 1.6 35 96-130 217-254 (585)
93 PF05725 FNIP: FNIP Repeat; I 27.1 86 0.0019 21.1 3.1 30 286-316 12-43 (44)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=9.5e-38 Score=362.90 Aligned_cols=447 Identities=24% Similarity=0.329 Sum_probs=289.0
Q ss_pred CCCCcEEecCCCcC------CCCCCcccCCC-CcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCC
Q 041071 1 MESLKTLVLSGCSK------LKKFPDIVGGM-ECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLE 73 (535)
Q Consensus 1 L~~L~~L~Ls~~~~------l~~lp~~~~~~-~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~ 73 (535)
|++|++|.+..+.. ...+|..+..+ .+|+.|.+.++.++.+|..+ .+.+|+.|+++++. +..+|..+..++
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~ 634 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLT 634 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc-ccccccccccCC
Confidence 56778887765421 12345444343 45788888887777787766 46778888887754 556776677778
Q ss_pred CCCEEeccCCCCCccCcccccCCCCCceeecccc-cCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeecc
Q 041071 74 CLQTLVLSGCSKIVKFPETVISVEDLSELFLDRT-SITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLS 152 (535)
Q Consensus 74 ~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls 152 (535)
+|+.|+|++|..+..+|. +..+++|++|++++| .+..+|.+++.+++|+.|++++|..+..+|..+ ++++|+.|+++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Ls 712 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLS 712 (1153)
T ss_pred CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCC
Confidence 888888887777777764 666778888888775 456777778888888888888887777777655 57788888888
Q ss_pred CccCCCCchhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCC--------ccccccccccccccCC
Q 041071 153 GCFKLENVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSA--------SWFLRFPINLMRWSSN 224 (535)
Q Consensus 153 ~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~--------~~~~~~~l~~l~l~~n 224 (535)
+|..+..+|.. ..+|+.|++++|.+..+|..+ .+++|+.|.+.++....... .......++.+++++|
T Consensus 713 gc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 713 GCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred CCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 88777777653 356777788888777776554 45566666655543211100 0011123455555555
Q ss_pred CcccccCCcccCCCCCCEEecCCCCCCCCCCCCCC--------------------CCCCCCCEEeCCCCcCCCCChhhcC
Q 041071 225 PVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSI--------------------GDLCSLEELHLSGNNFFTLPASIYR 284 (535)
Q Consensus 225 ~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l--------------------~~l~~L~~L~Ls~n~l~~lp~~i~~ 284 (535)
.....+|.++.++++|+.|+|++|.... .+|..+ ....+|+.|+|++|.+..+|.++..
T Consensus 789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~-~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~ 867 (1153)
T PLN03210 789 PSLVELPSSIQNLHKLEHLEIENCINLE-TLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEK 867 (1153)
T ss_pred CCccccChhhhCCCCCCEEECCCCCCcC-eeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhc
Confidence 5555555555555556666655553211 133221 1134678888888888999999999
Q ss_pred CCCCcEEeccCCcccccCCCCC---CCcceEeccCccccccccccccccc---------ccC---CCceeeccCchhhcc
Q 041071 285 LSSLLGIDLKECKMLQNLPRLP---ASIHWISLNGCVSLETLSDVLNLNE---------HQL---PHLILNCVDCLKLAG 349 (535)
Q Consensus 285 l~~L~~L~L~~c~~L~~lp~lp---~sL~~L~~~~C~sL~~l~~~~n~~~---------~~~---~~l~~~c~nC~kL~~ 349 (535)
+++|+.|++++|+.++.+|..+ ++|+.+++.+|.+|+.++....+.. ..+ ..+.|. ||++|++
T Consensus 868 l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~--nC~~L~~ 945 (1153)
T PLN03210 868 FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFI--NCFNLDQ 945 (1153)
T ss_pred CCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccc--cccCCCc
Confidence 9999999999999999998644 4677889999999998765332110 111 123455 9999974
Q ss_pred chhHHHHHHHHHhhcCCCCCcceEEEccCCCCCcccccccCCCceEE-EeCCCCCCCCCceE-E---e-c----C-C---
Q 041071 350 NYDLALSLLKEYIKNSEGPWRDFCIVVPGSEIPEWFEYQNNEGSSIT-ISTPPKTYKNSKLE-A---Y-H----P-G--- 415 (535)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~~~g~si~-~~lp~~~~~~~~~g-a---~-~----~-~--- 415 (535)
.. .+..+.. ...+++||.+||+||.||+ .|++++ |++|+.|+...|.| + + . + .
T Consensus 946 ~a---------~l~~~~~---~~~~~l~g~evp~~f~hr~-~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~~~~ 1012 (1153)
T PLN03210 946 EA---------LLQQQSI---FKQLILSGEEVPSYFTHRT-TGASLTNIPLLHISPCQPFFRFRACAVVDSESFFIISVS 1012 (1153)
T ss_pred hh---------hhccccc---ceEEECCCccCchhccCCc-ccceeeeeccCCcccCCCccceEEEEEEecCccccCCCc
Confidence 22 1111111 1357899999999999999 899998 99999998776776 3 2 1 1 1
Q ss_pred --CceEEEEec-cC----CCCCCeEEEEEEecCCcc----------------c-----c--ceeecC-C-C-ceeeeece
Q 041071 416 --FGWHLFRKQ-FG----QAMSDHLFLYYLKRERIS----------------K-----V--EFSSRS-G-L-ELKRCGLH 462 (535)
Q Consensus 416 --~~~~~~~~~-~~----~~~~dh~~~~~~~~~~~~----------------~-----~--~f~~~~-~-~-~vk~cG~~ 462 (535)
+.|.+.... .+ ....+|+|+.|....++. + . +|.+.. . . +||+||||
T Consensus 1013 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~cg~~ 1092 (1153)
T PLN03210 1013 FDIQVCCRFIDRLGNHFDSPYQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLTNKNSQLKLKGCGIR 1092 (1153)
T ss_pred eeEEEEEEEECCCCCccccCCCceeEeeeccccceEEecccccccccccchhccCCceeeEEEEEecCCCCeEEEeeeEE
Confidence 122222111 11 246678888776643211 0 0 232211 1 2 79999999
Q ss_pred EeeecccCc
Q 041071 463 PIYVHEGDK 471 (535)
Q Consensus 463 ~v~~~~~~~ 471 (535)
++|..+..+
T Consensus 1093 ~~~~~~~~~ 1101 (1153)
T PLN03210 1093 LSEDDSSLN 1101 (1153)
T ss_pred EeccCCCcc
Confidence 999766443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=2.4e-30 Score=299.48 Aligned_cols=294 Identities=24% Similarity=0.314 Sum_probs=126.9
Q ss_pred CCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCc-ccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEecc
Q 041071 3 SLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIK-ELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLS 81 (535)
Q Consensus 3 ~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~-~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls 81 (535)
+|++|+|++|...+.+|..++.+++|++|++++|.+. .+|..++++++|++|++++|.....+|..++++++|++|+|+
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 3344444444333344444444444444444444432 344444444444444444444444444444444444444444
Q ss_pred CCCCCccCcccccCCCCCceeecccccCc-ccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCc
Q 041071 82 GCSKIVKFPETVISVEDLSELFLDRTSIT-EVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENV 160 (535)
Q Consensus 82 ~c~~l~~~p~~l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l 160 (535)
+|.....+|..++.+++|++|++++|.+. .+|..++.+++|+.|++++|...+.+|..+.++++|++|++++|.....+
T Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 300 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC
Confidence 44444444444444444444444444443 34444444444444444444444444444444444445555444433444
Q ss_pred hhhhhccccccEEEecCcccc-CCCcccccCCCCcEEEcCCCCCCCCCCcccc-ccccccccccCCCcccccCCcccCCC
Q 041071 161 PETLRQIESLEKLDISGTAIR-QPLSSIFLMKNLKELSCRGCKGSPSSASWFL-RFPINLMRWSSNPVALSFPSSLSGLC 238 (535)
Q Consensus 161 p~~l~~l~~L~~L~L~~~~i~-~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~-~~~l~~l~l~~n~~~~~lp~~l~~l~ 238 (535)
|..+..+++|+.|++++|.+. ..|..+..+++|+.|++++|......+..+. ...++.++++.|.+.+.+|..+..++
T Consensus 301 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 380 (968)
T PLN00113 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380 (968)
T ss_pred ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence 444444445555555444444 2333444445555555555444322222111 12234444444444433333333333
Q ss_pred CCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCC-CCChhhcCCCCCcEEeccCCc
Q 041071 239 SLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFF-TLPASIYRLSSLLGIDLKECK 297 (535)
Q Consensus 239 ~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~ 297 (535)
+|+.|++++|++. +.+|..+..+++|+.|++++|.+. .+|..+..++.|+.|++++|.
T Consensus 381 ~L~~L~l~~n~l~-~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 381 NLFKLILFSNSLE-GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred CCCEEECcCCEec-ccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 3333333333331 223333344444444444444443 333333444444444444443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=9.7e-30 Score=294.49 Aligned_cols=323 Identities=23% Similarity=0.262 Sum_probs=250.9
Q ss_pred CCCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCc-ccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEe
Q 041071 1 MESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIK-ELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLV 79 (535)
Q Consensus 1 L~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~-~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~ 79 (535)
+++|++|+|++|...+.+|..++++++|++|++++|.+. .+|..+..+++|+.|++++|.....+|..+.++++|+.|+
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 314 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEE
Confidence 578999999999888888988889999999999998886 6788888999999999999887778888888899999999
Q ss_pred ccCCCCCccCcccccCCCCCceeecccccCc-ccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCC
Q 041071 80 LSGCSKIVKFPETVISVEDLSELFLDRTSIT-EVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLE 158 (535)
Q Consensus 80 Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~ 158 (535)
+++|...+.+|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|...+.+|..++.+++|+.|++++|....
T Consensus 315 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~ 394 (968)
T PLN00113 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG 394 (968)
T ss_pred CCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecc
Confidence 9988887888888888889999999888887 677788888888888888887766677766666667777776666555
Q ss_pred CchhhhhccccccEEEecCcccc-CCCcccccCC------------------------CCcEEEcCCCCCCCCCCccccc
Q 041071 159 NVPETLRQIESLEKLDISGTAIR-QPLSSIFLMK------------------------NLKELSCRGCKGSPSSASWFLR 213 (535)
Q Consensus 159 ~lp~~l~~l~~L~~L~L~~~~i~-~~~~~i~~l~------------------------~L~~L~L~~~~~~~~~~~~~~~ 213 (535)
.+|..++.+++|+.|++++|.+. ..|..+..++ +|+.|++++|......+..+..
T Consensus 395 ~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~ 474 (968)
T PLN00113 395 EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS 474 (968)
T ss_pred cCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc
Confidence 66666666666666666666555 3344444444 4555555555444333333333
Q ss_pred cccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCC-CCChhhcCCCCCcEEe
Q 041071 214 FPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFF-TLPASIYRLSSLLGID 292 (535)
Q Consensus 214 ~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~ 292 (535)
..++.+++++|.+.+.+|..+..+++|+.|+|++|.+. +.+|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+
T Consensus 475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 553 (968)
T PLN00113 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS-GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553 (968)
T ss_pred ccceEEECcCCccCCccChhhhhhhccCEEECcCCcce-eeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEE
Confidence 45777888888888888888888889999999999884 568888888999999999999988 6788888999999999
Q ss_pred ccCCcccccCCCC---CCCcceEeccCcccccccc
Q 041071 293 LKECKMLQNLPRL---PASIHWISLNGCVSLETLS 324 (535)
Q Consensus 293 L~~c~~L~~lp~l---p~sL~~L~~~~C~sL~~l~ 324 (535)
+++|+..+.+|.. ..+|+.+++++|.-...++
T Consensus 554 Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 554 LSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 9999988888752 3567888888887655555
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=3.1e-29 Score=254.53 Aligned_cols=319 Identities=25% Similarity=0.342 Sum_probs=238.9
Q ss_pred CcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCC-CccCcccCCCCCCCEEeccC
Q 041071 4 LKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNL-TTLPITIGNLECLQTLVLSG 82 (535)
Q Consensus 4 L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l-~~lp~~l~~l~~L~~L~Ls~ 82 (535)
+++|.|... .+..+|+.++.+.+|+.|.+.+|++..+...+..++.||.++++.|..- ..+|..+.++..|..|||+.
T Consensus 34 ~~WLkLnrt-~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 34 MTWLKLNRT-KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSH 112 (1255)
T ss_pred eeEEEechh-hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecch
Confidence 344444432 2334444444455555555555555444444445555555555543321 24566666788888888887
Q ss_pred CCCCccCcccccCCCCCceeecccccCcccCcc-ccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccC-----
Q 041071 83 CSKIVKFPETVISVEDLSELFLDRTSITEVPSS-IELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFK----- 156 (535)
Q Consensus 83 c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~----- 156 (535)
+.+.+.|..+...+++-.|+|++|+|..||.+ +.+++.|-.|+|++|+ +..+|..+..+..|++|+|++|..
T Consensus 113 -NqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQL 190 (1255)
T KOG0444|consen 113 -NQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQL 190 (1255)
T ss_pred -hhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHH
Confidence 45777788888888888888888888888765 4577777788888754 566666666677777777776542
Q ss_pred --------------------CCCchhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCcccccccc
Q 041071 157 --------------------LENVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPI 216 (535)
Q Consensus 157 --------------------l~~lp~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l 216 (535)
+..+|..+..+.+|..++++.|.+..+|..+..+++|+.|+|++|+..........-..+
T Consensus 191 rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~l 270 (1255)
T KOG0444|consen 191 RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENL 270 (1255)
T ss_pred hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhh
Confidence 245677788888899999999999999999999999999999999877655444444568
Q ss_pred ccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChhhcCCCCCcEEeccCC
Q 041071 217 NLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLKEC 296 (535)
Q Consensus 217 ~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c 296 (535)
+.++++.|+++ .+|+.+..++.|+.|.+.+|.+.-+.+|+.++.+..|+.+..++|++.-+|.+++.|.+|+.|.|++|
T Consensus 271 EtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 271 ETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHN 349 (1255)
T ss_pred hhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccc
Confidence 89999999987 68999999999999999999998899999999999999999999999999999999999999999988
Q ss_pred cccccCCC---CCCCcceEeccCccccccccccc
Q 041071 297 KMLQNLPR---LPASIHWISLNGCVSLETLSDVL 327 (535)
Q Consensus 297 ~~L~~lp~---lp~sL~~L~~~~C~sL~~l~~~~ 327 (535)
+. -.+|+ +.+.|+.|++.+-++|..=+.+.
T Consensus 350 rL-iTLPeaIHlL~~l~vLDlreNpnLVMPPKP~ 382 (1255)
T KOG0444|consen 350 RL-ITLPEAIHLLPDLKVLDLRENPNLVMPPKPN 382 (1255)
T ss_pred ce-eechhhhhhcCCcceeeccCCcCccCCCCcc
Confidence 75 45775 56889999999999887766543
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=3.4e-27 Score=239.82 Aligned_cols=299 Identities=22% Similarity=0.335 Sum_probs=234.7
Q ss_pred CCCCcEEecCCCcCCC-CCCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcc-cCCCCCCCEE
Q 041071 1 MESLKTLVLSGCSKLK-KFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPIT-IGNLECLQTL 78 (535)
Q Consensus 1 L~~L~~L~Ls~~~~l~-~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~-l~~l~~L~~L 78 (535)
|+.||.+++.+|+... .+|..+.++..|..|+|++|.+.+.|..+.+.+++-.|+|++|. +..+|.. +.++.-|-.|
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFL 155 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhh
Confidence 5678888888876542 45644448888888888888888888888888888888888854 5566654 4567788888
Q ss_pred eccCCCCCccCcccccCCCCCceeecccccCcccC-ccccCCCCCCEeccccCcC-CCccCccccCCCCCceeeccCccC
Q 041071 79 VLSGCSKIVKFPETVISVEDLSELFLDRTSITEVP-SSIELLTKLQWLNLNDCRS-LVRLPSSINGLTSLKTLNLSGCFK 156 (535)
Q Consensus 79 ~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~-l~~lp~~i~~l~~L~~L~Ls~c~~ 156 (535)
||+. +.++.+|..+..+.+|++|.|++|.+..+. ..+..++.|+.|.+++.+. +..+|.++..+.+|..++++.| .
T Consensus 156 DLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~ 233 (1255)
T KOG0444|consen 156 DLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-N 233 (1255)
T ss_pred cccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-C
Confidence 8887 567888888888888888888888665221 1222366777777777543 4567888888888888888876 6
Q ss_pred CCCchhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCccc-ccCCccc
Q 041071 157 LENVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVAL-SFPSSLS 235 (535)
Q Consensus 157 l~~lp~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~-~lp~~l~ 235 (535)
+..+|+.+.++.+|+.|++++|.|+++........+|++|++++|+....+...-....++.+...+|.+.. .+|+.++
T Consensus 234 Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG 313 (1255)
T KOG0444|consen 234 LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG 313 (1255)
T ss_pred CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchh
Confidence 777888888888888888888888888777778888888888888766554333333446666666776654 4899999
Q ss_pred CCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChhhcCCCCCcEEeccCCcccccCCC
Q 041071 236 GLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLKECKMLQNLPR 304 (535)
Q Consensus 236 ~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 304 (535)
.+..|+.+..++|.+- ..|+.++.|..|+.|.|+.|.+.++|..|.-++-|+.|++.+|+.|.--|.
T Consensus 314 KL~~Levf~aanN~LE--lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 314 KLIQLEVFHAANNKLE--LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hhhhhHHHHhhccccc--cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 9999999999999983 589999999999999999999999999999999999999999999987665
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=2.1e-23 Score=243.21 Aligned_cols=329 Identities=28% Similarity=0.371 Sum_probs=246.2
Q ss_pred EecCCCcCCCCCCcccCCCCcCcEEEeeccCC-------cccchhhhcCC-CccEEeccCCCCCCccCcccCCCCCCCEE
Q 041071 7 LVLSGCSKLKKFPDIVGGMECLQELRVDGTDI-------KELPVSIELMS-GLVSLNLKDCRNLTTLPITIGNLECLQTL 78 (535)
Q Consensus 7 L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l-------~~l~~~i~~l~-~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L 78 (535)
|+++.......-++.|.+|++|+.|.+.++.. ..+|..+..++ +|+.|++.++. ++.+|..+. ..+|+.|
T Consensus 539 l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f~-~~~L~~L 616 (1153)
T PLN03210 539 LDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNFR-PENLVKL 616 (1153)
T ss_pred eccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcCC-ccCCcEE
Confidence 34444332333346788999999999976532 25677777765 69999999864 788898774 8999999
Q ss_pred eccCCCCCccCcccccCCCCCceeeccccc-CcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCC
Q 041071 79 VLSGCSKIVKFPETVISVEDLSELFLDRTS-ITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKL 157 (535)
Q Consensus 79 ~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~-i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l 157 (535)
++.+| .+..++..+..+++|+.|+++++. +..+| .++.+++|+.|++.+|..+..+|..+..+++|+.|++++|..+
T Consensus 617 ~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 617 QMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694 (1153)
T ss_pred ECcCc-cccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence 99996 477889999999999999999864 66776 4888999999999999999999999999999999999999999
Q ss_pred CCchhhhhccccccEEEecCcccc-CCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCc-------ccc
Q 041071 158 ENVPETLRQIESLEKLDISGTAIR-QPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPV-------ALS 229 (535)
Q Consensus 158 ~~lp~~l~~l~~L~~L~L~~~~i~-~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~-------~~~ 229 (535)
+.+|..+ ++++|+.|++++|... .+|. ...+|+.|+++++.....+ .......+..+.+..+.. ...
T Consensus 695 ~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP-~~~~l~~L~~L~l~~~~~~~l~~~~~~l 769 (1153)
T PLN03210 695 EILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFP-SNLRLENLDELILCEMKSEKLWERVQPL 769 (1153)
T ss_pred CccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccccc-ccccccccccccccccchhhcccccccc
Confidence 9999866 7899999999998654 3332 2568999999998854432 222233455555544221 111
Q ss_pred cCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCC-cCCCCChhhcCCCCCcEEeccCCcccccCCCCCC-
Q 041071 230 FPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGN-NFFTLPASIYRLSSLLGIDLKECKMLQNLPRLPA- 307 (535)
Q Consensus 230 lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n-~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~- 307 (535)
.+......++|+.|+|++|... ..+|..++++++|+.|+|++| ++..+|..+ .+++|+.|++++|..++.+|..+.
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l-~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~n 847 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSL-VELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTN 847 (1153)
T ss_pred chhhhhccccchheeCCCCCCc-cccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccc
Confidence 1112234578999999999753 458999999999999999998 577899776 789999999999999888876544
Q ss_pred ----------------------CcceEeccCcccccccccccccccccCCCceeeccCchhhcc
Q 041071 308 ----------------------SIHWISLNGCVSLETLSDVLNLNEHQLPHLILNCVDCLKLAG 349 (535)
Q Consensus 308 ----------------------sL~~L~~~~C~sL~~l~~~~n~~~~~~~~l~~~c~nC~kL~~ 349 (535)
+|+.|++.+|.+|+.++..... ...+..+.|. +|.+|..
T Consensus 848 L~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~-L~~L~~L~l~--~C~~L~~ 908 (1153)
T PLN03210 848 ISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISK-LKHLETVDFS--DCGALTE 908 (1153)
T ss_pred cCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccccc-ccCCCeeecC--CCccccc
Confidence 4555666677777776653221 1234455666 8888753
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=1e-24 Score=220.73 Aligned_cols=298 Identities=24% Similarity=0.271 Sum_probs=210.0
Q ss_pred CCCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccch-hhhcCCCccEEeccCCCCCCccC-cccCCCCCCCEE
Q 041071 1 MESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPV-SIELMSGLVSLNLKDCRNLTTLP-ITIGNLECLQTL 78 (535)
Q Consensus 1 L~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~-~i~~l~~L~~L~Ls~~~~l~~lp-~~l~~l~~L~~L 78 (535)
+++|+.+++..| .++.+|.+.+...+|+.|+|.+|.|.++.. .+..++.|+.|||+.|.. ..+| ..|..-.++++|
T Consensus 101 l~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~i-s~i~~~sfp~~~ni~~L 178 (873)
T KOG4194|consen 101 LPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLI-SEIPKPSFPAKVNIKKL 178 (873)
T ss_pred CCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchh-hcccCCCCCCCCCceEE
Confidence 578999999887 578889888778889999999998887753 577788888888888653 3333 335556778888
Q ss_pred eccCCCCCccCcccccCCCCCceeecccccCcccCc-cccCCCCCCEeccccCcCC------------------------
Q 041071 79 VLSGCSKIVKFPETVISVEDLSELFLDRTSITEVPS-SIELLTKLQWLNLNDCRSL------------------------ 133 (535)
Q Consensus 79 ~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l------------------------ 133 (535)
+|++|.....-...+..+.+|..|.|++|.|+.+|. ++..|++|+.|+|..|..-
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~ 258 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS 258 (873)
T ss_pred eeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc
Confidence 888876555445556667777777777777777765 4555777777777665432
Q ss_pred CccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccccCC-CcccccCCCCcEEEcCCCCCCCCCCcccc
Q 041071 134 VRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQP-LSSIFLMKNLKELSCRGCKGSPSSASWFL 212 (535)
Q Consensus 134 ~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~-~~~i~~l~~L~~L~L~~~~~~~~~~~~~~ 212 (535)
+--...|..+.++++|+|+.|.....-..++.+++.|+.|+++.|+|..+ ++++..+++|+.|+|+.|......+..+.
T Consensus 259 kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~ 338 (873)
T KOG4194|consen 259 KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR 338 (873)
T ss_pred cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH
Confidence 11112344566666777766644443445677778888888888888743 46677788888888888887665544443
Q ss_pred c-cccccccccCCCcccccCCcccCCCCCCEEecCCCCCCC--CCCCCCCCCCCCCCEEeCCCCcCCCCCh-hhcCCCCC
Q 041071 213 R-FPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGE--GAIPSSIGDLCSLEELHLSGNNFFTLPA-SIYRLSSL 288 (535)
Q Consensus 213 ~-~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~--~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L 288 (535)
. ..++.+++++|.+...-...|.++++|++|||++|.+.. +.-...|..+++|+.|++.||++..+|. .+.+++.|
T Consensus 339 ~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~L 418 (873)
T KOG4194|consen 339 VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEAL 418 (873)
T ss_pred HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccc
Confidence 3 337778888888776666667788888888888886532 1123456678888888888888888885 67788888
Q ss_pred cEEeccCCcccc
Q 041071 289 LGIDLKECKMLQ 300 (535)
Q Consensus 289 ~~L~L~~c~~L~ 300 (535)
++|+|.+|..-.
T Consensus 419 E~LdL~~NaiaS 430 (873)
T KOG4194|consen 419 EHLDLGDNAIAS 430 (873)
T ss_pred ceecCCCCccee
Confidence 888888887543
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=3.1e-24 Score=217.22 Aligned_cols=291 Identities=22% Similarity=0.245 Sum_probs=160.2
Q ss_pred cEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCC
Q 041071 5 KTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCS 84 (535)
Q Consensus 5 ~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~ 84 (535)
++||+++|.....-+.+|.++++|+++++.+|.++.+|...+...+|+.|+|.+|.........+.-++.|+.|||+.|.
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~ 160 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL 160 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch
Confidence 45666666544444555566677777777666666666655555566777776655444434445556666677776643
Q ss_pred CCccCc-ccccCCCCCceeecccccCcccCc-cccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCc-h
Q 041071 85 KIVKFP-ETVISVEDLSELFLDRTSITEVPS-SIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENV-P 161 (535)
Q Consensus 85 ~l~~~p-~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l-p 161 (535)
+..+| ..+-.-.++++|+|++|.|+.+.. .+..+.+|..|.|+.|....--+..|.+++.|+.|+|..|. ++.. -
T Consensus 161 -is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ 238 (873)
T KOG4194|consen 161 -ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEG 238 (873)
T ss_pred -hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehh
Confidence 33333 223334566677777776665543 45556666666666655433333445556666666666652 2222 2
Q ss_pred hhhhccccccEEEecCccccCCCc-ccccCCCCcEEEcCCCCCCCCCCccccc-cccccccccCCCcccccCCcccCCCC
Q 041071 162 ETLRQIESLEKLDISGTAIRQPLS-SIFLMKNLKELSCRGCKGSPSSASWFLR-FPINLMRWSSNPVALSFPSSLSGLCS 239 (535)
Q Consensus 162 ~~l~~l~~L~~L~L~~~~i~~~~~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~-~~l~~l~l~~n~~~~~lp~~l~~l~~ 239 (535)
..|..+++|+.|.+..|.|..+-+ .+..+.++++|+|..|+.......|... ..++.++++.|.+...-++....+++
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk 318 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK 318 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence 334555555555555555554432 2334556666666666554443333322 23556666666666555555556666
Q ss_pred CCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCCh-hhcCCCCCcEEeccCCcc
Q 041071 240 LTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPA-SIYRLSSLLGIDLKECKM 298 (535)
Q Consensus 240 L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~ 298 (535)
|++|+|++|+++. .-+..|..++.|++|+|++|.+..+.. .+..+++|++|+|++|..
T Consensus 319 L~~LdLs~N~i~~-l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 319 LKELDLSSNRITR-LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred ceeEecccccccc-CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence 6666666666643 223344445555555555555544433 233445555555555544
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=4e-25 Score=214.96 Aligned_cols=113 Identities=29% Similarity=0.390 Sum_probs=78.7
Q ss_pred CccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCcccc-CCCCCceeeccCccCCCCchhhh
Q 041071 86 IVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSIN-GLTSLKTLNLSGCFKLENVPETL 164 (535)
Q Consensus 86 l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~-~l~~L~~L~Ls~c~~l~~lp~~l 164 (535)
++.+|..++.|.+|..|++..|.|..+| .|+.+..|++|.+..|. +..+|..++ ++++|.+||+.+| +++++|+.+
T Consensus 195 L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~ 271 (565)
T KOG0472|consen 195 LETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEI 271 (565)
T ss_pred hhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeecccc-ccccCchHH
Confidence 4445555555555555555555555555 45555555555555432 345665554 6788888888887 678888888
Q ss_pred hccccccEEEecCccccCCCcccccCCCCcEEEcCCCC
Q 041071 165 RQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCK 202 (535)
Q Consensus 165 ~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~ 202 (535)
.-+++|+.||+++|.|+.+|.+++++ .|+.|.+.||.
T Consensus 272 clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 272 CLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 88888888888888888888888888 88888888775
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=3e-24 Score=208.88 Aligned_cols=264 Identities=29% Similarity=0.380 Sum_probs=147.2
Q ss_pred CcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecc
Q 041071 26 ECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLD 105 (535)
Q Consensus 26 ~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~ 105 (535)
.-|..|.+++|.+..+.+.+.++..|.+|++.++. +..+|.+++.+..++.|+.+. +++..+|+.++.+.+|++|+.+
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~-l~~lp~aig~l~~l~~l~vs~-n~ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNK-LSQLPAAIGELEALKSLNVSH-NKLSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccch-hhhCCHHHHHHHHHHHhhccc-chHhhccHHHhhhhhhhhhhcc
Confidence 34444555555555444445555555555555433 333344444455555555554 2344445555555555555555
Q ss_pred cccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccccCCCc
Q 041071 106 RTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLS 185 (535)
Q Consensus 106 ~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~ 185 (535)
.|.++++|++++.+..|..++..+|. ...+|..+.++.+|..|++.+| .+..+|+..-+|+.|++|+...|-+..+|+
T Consensus 123 ~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~ 200 (565)
T KOG0472|consen 123 SNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNLLETLPP 200 (565)
T ss_pred ccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhhhhcCCh
Confidence 55555555555555555555544432 2344444444555555555554 233333333335555555555555555555
Q ss_pred ccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCC-cccCCCCCCEEecCCCCCCCCCCCCCCCCCCC
Q 041071 186 SIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPS-SLSGLCSLTKLDISDCDLGEGAIPSSIGDLCS 264 (535)
Q Consensus 186 ~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~-~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~ 264 (535)
.++.+.+|..|++.+|+....+ .+.....+..+..+.|.+. .+|+ ...++++|..|||.+|.+.+ .|+.+..+.+
T Consensus 201 ~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke--~Pde~clLrs 276 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE--VPDEICLLRS 276 (565)
T ss_pred hhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc--CchHHHHhhh
Confidence 5555555555555554433221 1111122333333444333 3343 34588889999999999876 8888888999
Q ss_pred CCEEeCCCCcCCCCChhhcCCCCCcEEeccCCcc
Q 041071 265 LEELHLSGNNFFTLPASIYRLSSLLGIDLKECKM 298 (535)
Q Consensus 265 L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 298 (535)
|++||+++|.++.+|.+++++ .|+.|.+.+|+.
T Consensus 277 L~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 277 LERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred hhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 999999999999999999998 899999998874
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=2.7e-22 Score=213.13 Aligned_cols=287 Identities=25% Similarity=0.283 Sum_probs=174.8
Q ss_pred CCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccC
Q 041071 3 SLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSG 82 (535)
Q Consensus 3 ~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~ 82 (535)
+|+.||+++|. ....|..+..+.+|+.|.++.|.|.++|.++.++.+|++|.|.+ +.+..+|.++..+.+|+.|++++
T Consensus 46 ~L~~l~lsnn~-~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 46 KLKSLDLSNNQ-ISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eeEEeeccccc-cccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhcccccccch
Confidence 37788888874 55667666677888888888888888888888888888888875 55777888888888888888888
Q ss_pred CCCCccCcccccCCCCCceeecccc-------------------cCc-ccCccccCCCCCCEeccccCcCC---------
Q 041071 83 CSKIVKFPETVISVEDLSELFLDRT-------------------SIT-EVPSSIELLTKLQWLNLNDCRSL--------- 133 (535)
Q Consensus 83 c~~l~~~p~~l~~l~~L~~L~L~~~-------------------~i~-~lp~~i~~l~~L~~L~L~~c~~l--------- 133 (535)
| .+..+|..+..+..+..+..++| .+. .++..+..++. .|+|++|...
T Consensus 124 N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~ 200 (1081)
T KOG0618|consen 124 N-HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLAN 200 (1081)
T ss_pred h-ccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhccc
Confidence 4 45566655544443333333333 110 01111111111 1222222111
Q ss_pred -Ccc--------------C---------------ccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccc---
Q 041071 134 -VRL--------------P---------------SSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAI--- 180 (535)
Q Consensus 134 -~~l--------------p---------------~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i--- 180 (535)
..+ | ..-..-.+|++++++.+ .+..+|++++.+.+|+.+.+..|.+
T Consensus 201 l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~l~~l 279 (1081)
T KOG0618|consen 201 LEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHN-NLSNLPEWIGACANLEALNANHNRLVAL 279 (1081)
T ss_pred hhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchh-hhhcchHHHHhcccceEecccchhHHhh
Confidence 000 0 00000123344444433 3344555555555555555555544
Q ss_pred --------------------cCCCcccccCCCCcEEEcCCCCCCCCCCccccc--------------------------c
Q 041071 181 --------------------RQPLSSIFLMKNLKELSCRGCKGSPSSASWFLR--------------------------F 214 (535)
Q Consensus 181 --------------------~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~--------------------------~ 214 (535)
..+|+....++.|++|++..|.....+...+.. .
T Consensus 280 p~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~ 359 (1081)
T KOG0618|consen 280 PLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHA 359 (1081)
T ss_pred HHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhH
Confidence 445555666778888888888765443321111 0
Q ss_pred ccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCC-CCCCCCCCCEEeCCCCcCCCCChhhcCCCCCcEEec
Q 041071 215 PINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPS-SIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDL 293 (535)
Q Consensus 215 ~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L 293 (535)
.+..|.+.+|.++...-..+.++++|+.|+|++|.+.. +|. .+.++..|++|+||||+++.+|.++..+..|++|..
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~--fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS--FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeeccccccc--CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence 14456667777777666668889999999999998865 664 567788999999999998888877766666666665
Q ss_pred cCCc
Q 041071 294 KECK 297 (535)
Q Consensus 294 ~~c~ 297 (535)
..|+
T Consensus 438 hsN~ 441 (1081)
T KOG0618|consen 438 HSNQ 441 (1081)
T ss_pred cCCc
Confidence 5554
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.80 E-value=1.1e-21 Score=208.43 Aligned_cols=311 Identities=24% Similarity=0.311 Sum_probs=223.6
Q ss_pred CCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCC--------
Q 041071 2 ESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLE-------- 73 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~-------- 73 (535)
.+|+.|+++.| .+...|....++.+|++|.|.+|.+..+|.++..+++|++|+++.|.+.. .|.-+..+.
T Consensus 68 ~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~-~Pl~i~~lt~~~~~~~s 145 (1081)
T KOG0618|consen 68 SHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGP-IPLVIEVLTAEEELAAS 145 (1081)
T ss_pred HHHhhcccchh-hHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCC-CchhHHhhhHHHHHhhh
Confidence 57899999997 57788877889999999999999999999999999999999999865332 222111111
Q ss_pred --------------------------------CCCE-EeccCCCCC----------ccCcc-------------------
Q 041071 74 --------------------------------CLQT-LVLSGCSKI----------VKFPE------------------- 91 (535)
Q Consensus 74 --------------------------------~L~~-L~Ls~c~~l----------~~~p~------------------- 91 (535)
+|++ |+|+.|... +.+-.
T Consensus 146 ~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~ 225 (1081)
T KOG0618|consen 146 NNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALY 225 (1081)
T ss_pred cchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheee
Confidence 2222 444333221 00000
Q ss_pred ----------cccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCch
Q 041071 92 ----------TVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVP 161 (535)
Q Consensus 92 ----------~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp 161 (535)
....-.+|++++++.+.+..+|++++.+.+|+.++...|.. ..+|..+....+|+.|.+..| .++.+|
T Consensus 226 a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip 303 (1081)
T KOG0618|consen 226 ADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIP 303 (1081)
T ss_pred eccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCC
Confidence 00011355666667777777777777777777777776553 566666666666777766666 567777
Q ss_pred hhhhccccccEEEecCccccCCCccccc--------------------------CCCCcEEEcCCCCCCCCCC-cccccc
Q 041071 162 ETLRQIESLEKLDISGTAIRQPLSSIFL--------------------------MKNLKELSCRGCKGSPSSA-SWFLRF 214 (535)
Q Consensus 162 ~~l~~l~~L~~L~L~~~~i~~~~~~i~~--------------------------l~~L~~L~L~~~~~~~~~~-~~~~~~ 214 (535)
...+..++|++|++..|.+..+|+.+.. .+.|+.|++.+|....... ......
T Consensus 304 ~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~ 383 (1081)
T KOG0618|consen 304 PFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK 383 (1081)
T ss_pred CcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccc
Confidence 7788888999999999988876653221 2346667777777654432 222334
Q ss_pred ccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChhhcCCCCCcEEecc
Q 041071 215 PINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLK 294 (535)
Q Consensus 215 ~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~ 294 (535)
.++.++++.|.+..--.+.+.++..|++|+||+|.++. +|..+..+..|++|...+|++..+| .+.+++.|+.+|++
T Consensus 384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT--LPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLS 460 (1081)
T ss_pred ceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh--hhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecc
Confidence 58899999999875444567889999999999999977 9999999999999999999999999 89999999999999
Q ss_pred CCcccc-cCCC-CC-CCcceEeccCccc
Q 041071 295 ECKMLQ-NLPR-LP-ASIHWISLNGCVS 319 (535)
Q Consensus 295 ~c~~L~-~lp~-lp-~sL~~L~~~~C~s 319 (535)
.|..-. .+|+ +| +.|++|++.|-+.
T Consensus 461 ~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 461 CNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cchhhhhhhhhhCCCcccceeeccCCcc
Confidence 887532 3444 67 8999999988663
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=1.2e-18 Score=190.61 Aligned_cols=259 Identities=21% Similarity=0.264 Sum_probs=204.0
Q ss_pred CcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCC
Q 041071 4 LKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGC 83 (535)
Q Consensus 4 L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c 83 (535)
-..|+|+++. ++.+|+.+ .++|+.|++.+|.++.+|.. +++|++|++++| .++.+|.. .++|+.|++++|
T Consensus 203 ~~~LdLs~~~-LtsLP~~l--~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 203 NAVLNVGESG-LTTLPDCL--PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CcEEEcCCCC-CCcCCcch--hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccCC
Confidence 4679999984 56788876 35899999999999999863 689999999997 46677753 478999999997
Q ss_pred CCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhh
Q 041071 84 SKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPET 163 (535)
Q Consensus 84 ~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~ 163 (535)
. +..+|.. ..+|+.|++++|.++.+|.. +++|+.|++++|+. ..+|.. ..+|+.|++++| .+..+|..
T Consensus 273 ~-L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L-~~Lp~l---p~~L~~L~Ls~N-~L~~LP~l 340 (788)
T PRK15387 273 P-LTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL-ASLPAL---PSELCKLWAYNN-QLTSLPTL 340 (788)
T ss_pred c-hhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCcc-ccCCCC---cccccccccccC-cccccccc
Confidence 5 5566653 35788999999999999863 57899999999864 456652 346888999988 45667642
Q ss_pred hhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEE
Q 041071 164 LRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKL 243 (535)
Q Consensus 164 l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L 243 (535)
..+|+.|++++|.++.+|.. ..+|+.|++++|.....+. ....++.+++++|.+.. +|.. .++|+.|
T Consensus 341 ---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~---l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~L 407 (788)
T PRK15387 341 ---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTS-LPVL---PSELKEL 407 (788)
T ss_pred ---ccccceEecCCCccCCCCCC---CcccceehhhccccccCcc---cccccceEEecCCcccC-CCCc---ccCCCEE
Confidence 25899999999999988863 4678889999888664322 12457889999998874 5543 3689999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChhhcCCCCCcEEeccCCcccccC
Q 041071 244 DISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLKECKMLQNL 302 (535)
Q Consensus 244 ~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~l 302 (535)
++++|.+.. +|.. ..+|+.|++++|++..+|..+..++.|+.|+|++|+.-...
T Consensus 408 dLS~N~Lss--IP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 408 MVSGNRLTS--LPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred EccCCcCCC--CCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchH
Confidence 999999864 7753 35788999999999999999999999999999999875543
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=3.7e-18 Score=187.81 Aligned_cols=244 Identities=25% Similarity=0.377 Sum_probs=133.6
Q ss_pred CcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCC
Q 041071 4 LKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGC 83 (535)
Q Consensus 4 L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c 83 (535)
...|+++++. ++.+|..+ .++|+.|+|++|.+..+|..+. .+|+.|++++|. +..+|..+. .+|+.|+|++|
T Consensus 180 ~~~L~L~~~~-LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 180 KTELRLKILG-LTTIPACI--PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred ceEEEeCCCC-cCcCCccc--ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCC
Confidence 4556666653 44555444 3456666666666666665442 466666666543 445554332 35666666665
Q ss_pred CCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhh
Q 041071 84 SKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPET 163 (535)
Q Consensus 84 ~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~ 163 (535)
. +..+|..+. .+|+.|++++|.+..+|..+. ++|+.|++++|+ +..+|..+. ++|+.|++++| .+..+|..
T Consensus 252 ~-L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~~ 322 (754)
T PRK15370 252 R-ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSN-SLTALPET 322 (754)
T ss_pred c-cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCC-ccccCCcc
Confidence 4 334554432 356666666666666555442 356666666553 233443322 34555666555 23334433
Q ss_pred hhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEE
Q 041071 164 LRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKL 243 (535)
Q Consensus 164 l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L 243 (535)
+. ++|+.|++++|.++.+|..+ +++|+.|++++|... .+|..+ .++|+.|
T Consensus 323 l~--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~------------------------~LP~~l--p~~L~~L 372 (754)
T PRK15370 323 LP--PGLKTLEAGENALTSLPASL--PPELQVLDVSKNQIT------------------------VLPETL--PPTITTL 372 (754)
T ss_pred cc--ccceeccccCCccccCChhh--cCcccEEECCCCCCC------------------------cCChhh--cCCcCEE
Confidence 22 45555666666555555433 245555555555432 123222 1467777
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChhhc----CCCCCcEEeccCCcc
Q 041071 244 DISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPASIY----RLSSLLGIDLKECKM 298 (535)
Q Consensus 244 ~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~----~l~~L~~L~L~~c~~ 298 (535)
+|++|++.. +|..+. .+|+.|++++|++..+|..+. .++.+..|++.+|+.
T Consensus 373 dLs~N~Lt~--LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 373 DVSRNALTN--LPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred ECCCCcCCC--CCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 777777753 665443 357777777777777665443 346677777777764
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.70 E-value=5.8e-17 Score=178.37 Aligned_cols=228 Identities=22% Similarity=0.371 Sum_probs=169.1
Q ss_pred CcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecc
Q 041071 26 ECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLD 105 (535)
Q Consensus 26 ~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~ 105 (535)
.+...|+++++.+..+|..+ .++|+.|++++|. +..+|..+. .+|+.|++++|. +..+|..+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI--PEQITTLILDNNE-LKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCcCCccc--ccCCcEEEecCCC-CCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECc
Confidence 45678999988888888765 3578999998864 667776553 589999998864 567776553 478999999
Q ss_pred cccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccccCCCc
Q 041071 106 RTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLS 185 (535)
Q Consensus 106 ~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~ 185 (535)
+|.+..+|..+. .+|+.|++++|+ +..+|..+. ++|+.|++++| .+..+|..+. .+|+.|++++|.+..+|.
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~ 321 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSNSLTALPE 321 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcCCccccCCc
Confidence 999988887764 578899998765 456776553 57888999888 5566665443 468888888888887765
Q ss_pred ccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCC
Q 041071 186 SIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSL 265 (535)
Q Consensus 186 ~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L 265 (535)
.+ .++|+.|++++|.... +|..+. ++|+.|+|++|++.. +|..+ .++|
T Consensus 322 ~l--~~sL~~L~Ls~N~Lt~------------------------LP~~l~--~sL~~L~Ls~N~L~~--LP~~l--p~~L 369 (754)
T PRK15370 322 TL--PPGLKTLEAGENALTS------------------------LPASLP--PELQVLDVSKNQITV--LPETL--PPTI 369 (754)
T ss_pred cc--cccceeccccCCcccc------------------------CChhhc--CcccEEECCCCCCCc--CChhh--cCCc
Confidence 44 3577777777765432 333332 589999999999864 67655 3689
Q ss_pred CEEeCCCCcCCCCChhhcCCCCCcEEeccCCcccccCCC
Q 041071 266 EELHLSGNNFFTLPASIYRLSSLLGIDLKECKMLQNLPR 304 (535)
Q Consensus 266 ~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 304 (535)
+.|+|++|++..+|..+. ..|+.|++++|+. ..+|+
T Consensus 370 ~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L-~~LP~ 405 (754)
T PRK15370 370 TTLDVSRNALTNLPENLP--AALQIMQASRNNL-VRLPE 405 (754)
T ss_pred CEEECCCCcCCCCCHhHH--HHHHHHhhccCCc-ccCch
Confidence 999999999999998765 3799999999864 46664
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.70 E-value=1.5e-16 Score=174.17 Aligned_cols=243 Identities=24% Similarity=0.305 Sum_probs=189.5
Q ss_pred CCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEecc
Q 041071 2 ESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLS 81 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls 81 (535)
++|+.|++++|. ++.+|.. +++|++|++++|.|+.+|.. .++|+.|++++|. +..+|.. ..+|+.|+++
T Consensus 222 ~~L~~L~L~~N~-Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls 290 (788)
T PRK15387 222 AHITTLVIPDNN-LTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIF 290 (788)
T ss_pred cCCCEEEccCCc-CCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCc-hhhhhhc---hhhcCEEECc
Confidence 368999999985 5567753 68999999999999999853 4789999999875 5667753 3678999999
Q ss_pred CCCCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCch
Q 041071 82 GCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVP 161 (535)
Q Consensus 82 ~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp 161 (535)
+| .+..+|.. +++|+.|++++|.+..+|... ..|+.|++.+|.. ..+|.. ..+|+.|+|++| .+..+|
T Consensus 291 ~N-~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L-~~LP~l---p~~Lq~LdLS~N-~Ls~LP 358 (788)
T PRK15387 291 GN-QLTSLPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNNQL-TSLPTL---PSGLQELSVSDN-QLASLP 358 (788)
T ss_pred CC-cccccccc---ccccceeECCCCccccCCCCc---ccccccccccCcc-cccccc---ccccceEecCCC-ccCCCC
Confidence 97 45667753 478999999999999988643 4677888988764 456652 357999999998 566677
Q ss_pred hhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCC
Q 041071 162 ETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLT 241 (535)
Q Consensus 162 ~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~ 241 (535)
.. ..+|+.|++++|.+..+|.. +.+|+.|++++|.....+. ....+..+++++|.+.. +|.. ..+|+
T Consensus 359 ~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~---l~s~L~~LdLS~N~Lss-IP~l---~~~L~ 425 (788)
T PRK15387 359 TL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPV---LPSELKELMVSGNRLTS-LPML---PSGLL 425 (788)
T ss_pred CC---CcccceehhhccccccCccc---ccccceEEecCCcccCCCC---cccCCCEEEccCCcCCC-CCcc---hhhhh
Confidence 53 35788899999999987754 3679999999998664332 12458889999999874 6653 34789
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCC-CCChhh
Q 041071 242 KLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFF-TLPASI 282 (535)
Q Consensus 242 ~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i 282 (535)
.|++++|++.. +|..+..+++|+.|+|++|.+. ..|..+
T Consensus 426 ~L~Ls~NqLt~--LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 426 SLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhccCcccc--cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 99999999975 9999999999999999999998 334334
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.65 E-value=1.2e-17 Score=168.93 Aligned_cols=273 Identities=23% Similarity=0.227 Sum_probs=158.3
Q ss_pred EEecCCCcCC-CCCCcccCCCCcCcEEEeeccCCc-----ccchhhhcCCCccEEeccCCCCC------CccCcccCCCC
Q 041071 6 TLVLSGCSKL-KKFPDIVGGMECLQELRVDGTDIK-----ELPVSIELMSGLVSLNLKDCRNL------TTLPITIGNLE 73 (535)
Q Consensus 6 ~L~Ls~~~~l-~~lp~~~~~~~~L~~L~L~~~~l~-----~l~~~i~~l~~L~~L~Ls~~~~l------~~lp~~l~~l~ 73 (535)
.|+|+.+... ......+..+.+|++|+++++.+. .++..+...++|++|+++++... ..++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4667666554 345566667888999999998883 46666778888999999886543 12334466678
Q ss_pred CCCEEeccCCCCCccCcccccCCCC---CceeecccccCcc-----cCccccCC-CCCCEeccccCcCCC----ccCccc
Q 041071 74 CLQTLVLSGCSKIVKFPETVISVED---LSELFLDRTSITE-----VPSSIELL-TKLQWLNLNDCRSLV----RLPSSI 140 (535)
Q Consensus 74 ~L~~L~Ls~c~~l~~~p~~l~~l~~---L~~L~L~~~~i~~-----lp~~i~~l-~~L~~L~L~~c~~l~----~lp~~i 140 (535)
+|+.|++++|......+..+..+.. |++|++++|.+.. +...+..+ ++|+.|++++|.... .++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 8888888887765555555444444 8888888877762 23345555 777777777776542 233344
Q ss_pred cCCCCCceeeccCccCCC----CchhhhhccccccEEEecCccccC-----CCcccccCCCCcEEEcCCCCCCCCCCccc
Q 041071 141 NGLTSLKTLNLSGCFKLE----NVPETLRQIESLEKLDISGTAIRQ-----PLSSIFLMKNLKELSCRGCKGSPSSASWF 211 (535)
Q Consensus 141 ~~l~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~L~~~~i~~-----~~~~i~~l~~L~~L~L~~~~~~~~~~~~~ 211 (535)
..+++|++|++++|.... .++..+..+++|+.|++++|.+.. +...+..+++|++|++++|.........+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 556677777777764332 233344455577777777776652 22334455666666666655321100000
Q ss_pred cccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCC---CCCCCCCCCCCCCEEeCCCCcCCCC-----Chhhc
Q 041071 212 LRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEG---AIPSSIGDLCSLEELHLSGNNFFTL-----PASIY 283 (535)
Q Consensus 212 ~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~---~lp~~l~~l~~L~~L~Ls~n~l~~l-----p~~i~ 283 (535)
...+ ....+.|+.|++++|.+++. .+...+..+++|+.|++++|.+..- ...+.
T Consensus 242 ---------------~~~~---~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~ 303 (319)
T cd00116 242 ---------------ASAL---LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLL 303 (319)
T ss_pred ---------------HHHH---hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHh
Confidence 0000 01234566666666665421 1222333445666666666666532 22233
Q ss_pred CC-CCCcEEeccCC
Q 041071 284 RL-SSLLGIDLKEC 296 (535)
Q Consensus 284 ~l-~~L~~L~L~~c 296 (535)
.. +.|+.|++.++
T Consensus 304 ~~~~~~~~~~~~~~ 317 (319)
T cd00116 304 EPGNELESLWVKDD 317 (319)
T ss_pred hcCCchhhcccCCC
Confidence 33 45666666554
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.6e-17 Score=144.93 Aligned_cols=170 Identities=23% Similarity=0.368 Sum_probs=124.9
Q ss_pred CCCCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccC
Q 041071 16 KKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVIS 95 (535)
Q Consensus 16 ~~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~ 95 (535)
.++|..| ++.++..|.|++|.+..+|..|..+.+|+.|++.+| .+..+|.+++.++.|+.|+++- +.+..+|.+++.
T Consensus 24 ~~~~gLf-~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgm-nrl~~lprgfgs 100 (264)
T KOG0617|consen 24 EELPGLF-NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGM-NRLNILPRGFGS 100 (264)
T ss_pred hhccccc-chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecch-hhhhcCccccCC
Confidence 3455556 677777777777777777777777777777777764 4666777777777777777765 456677777777
Q ss_pred CCCCceeecccccCc--ccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEE
Q 041071 96 VEDLSELFLDRTSIT--EVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKL 173 (535)
Q Consensus 96 l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 173 (535)
++.|+.|+++.|.+. .+|-.+..++.|+.|++++|.+ ..+|..++++++|+.|.+.+| .+-++|..++.++.|++|
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLREL 178 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHH
Confidence 777888877777776 4677777777777777777653 566767777888888877777 455677778888888888
Q ss_pred EecCccccCCCcccccC
Q 041071 174 DISGTAIRQPLSSIFLM 190 (535)
Q Consensus 174 ~L~~~~i~~~~~~i~~l 190 (535)
++.+|.++.+|+.++.+
T Consensus 179 hiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 179 HIQGNRLTVLPPELANL 195 (264)
T ss_pred hcccceeeecChhhhhh
Confidence 88888888777766544
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=7e-17 Score=140.92 Aligned_cols=162 Identities=29% Similarity=0.447 Sum_probs=116.1
Q ss_pred CCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEecc
Q 041071 2 ESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLS 81 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls 81 (535)
++++.|.||+|. +..+|.-+..+.+|+.|++.+|.++++|.++..+++|+.|++.-| .+..+|..|+.++.|+.|||.
T Consensus 33 s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 33 SNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhcc
Confidence 455667777764 444555555777888888888888888877777888888887653 466677777778888888887
Q ss_pred CCCCC-ccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCc
Q 041071 82 GCSKI-VKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENV 160 (535)
Q Consensus 82 ~c~~l-~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l 160 (535)
+|+.- ..+|..+..|..|+.|+++.|.+.-+|..++++++|+.|.+++|. +-++|..++.+..|++|.+.|| .+..+
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgn-rl~vl 188 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGN-RLTVL 188 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccc-eeeec
Confidence 75544 336777777777788888888877777778888888888777764 4467777777777888887777 45666
Q ss_pred hhhhhcc
Q 041071 161 PETLRQI 167 (535)
Q Consensus 161 p~~l~~l 167 (535)
|..++++
T Consensus 189 ppel~~l 195 (264)
T KOG0617|consen 189 PPELANL 195 (264)
T ss_pred Chhhhhh
Confidence 6655543
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.53 E-value=8e-16 Score=155.52 Aligned_cols=251 Identities=22% Similarity=0.196 Sum_probs=157.6
Q ss_pred EEEeeccCCc--ccchhhhcCCCccEEeccCCCCCC----ccCcccCCCCCCCEEeccCCCCC------ccCcccccCCC
Q 041071 30 ELRVDGTDIK--ELPVSIELMSGLVSLNLKDCRNLT----TLPITIGNLECLQTLVLSGCSKI------VKFPETVISVE 97 (535)
Q Consensus 30 ~L~L~~~~l~--~l~~~i~~l~~L~~L~Ls~~~~l~----~lp~~l~~l~~L~~L~Ls~c~~l------~~~p~~l~~l~ 97 (535)
.|+|.++.+. .....+..+.+|+.|++++|.... .++..+...++|++|+++++... ..++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3566665554 334446677789999999887532 34555666788999999886543 22345566778
Q ss_pred CCceeecccccCc-ccCccccCCC---CCCEeccccCcCCC----ccCccccCC-CCCceeeccCccCCC----Cchhhh
Q 041071 98 DLSELFLDRTSIT-EVPSSIELLT---KLQWLNLNDCRSLV----RLPSSINGL-TSLKTLNLSGCFKLE----NVPETL 164 (535)
Q Consensus 98 ~L~~L~L~~~~i~-~lp~~i~~l~---~L~~L~L~~c~~l~----~lp~~i~~l-~~L~~L~Ls~c~~l~----~lp~~l 164 (535)
+|+.|+++++.+. ..+..+..+. +|++|++++|.... .+...+..+ ++|+.|++++|.... .++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 8888888888876 2333343333 48888888876542 222334455 788888888885442 344556
Q ss_pred hccccccEEEecCccccC-----CCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCC
Q 041071 165 RQIESLEKLDISGTAIRQ-----PLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCS 239 (535)
Q Consensus 165 ~~l~~L~~L~L~~~~i~~-----~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~ 239 (535)
..+++|++|++++|.+.. ++..+..+++|+.|++++|....... ..+...+..+++
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-------------------~~l~~~~~~~~~ 222 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA-------------------SALAETLASLKS 222 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH-------------------HHHHHHhcccCC
Confidence 666778888888887762 22334445678888887776432110 112334556778
Q ss_pred CCEEecCCCCCCCCCCCCCCC----CCCCCCEEeCCCCcCC-----CCChhhcCCCCCcEEeccCCccc
Q 041071 240 LTKLDISDCDLGEGAIPSSIG----DLCSLEELHLSGNNFF-----TLPASIYRLSSLLGIDLKECKML 299 (535)
Q Consensus 240 L~~L~Ls~~~l~~~~lp~~l~----~l~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~~L 299 (535)
|++|++++|.+.+..+..... ..+.|+.|++++|.++ .+...+..+++|++|++++|..-
T Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 888888888775311111111 2367888888888775 34445666678888888887653
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.44 E-value=7.4e-15 Score=143.66 Aligned_cols=139 Identities=25% Similarity=0.361 Sum_probs=108.9
Q ss_pred CCCCCCcccCCCCcCcEEEeeccCCcccch-hhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcc-
Q 041071 14 KLKKFPDIVGGMECLQELRVDGTDIKELPV-SIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPE- 91 (535)
Q Consensus 14 ~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~-~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~- 91 (535)
.++.+|..+ .+.-.+++|..|.|+.||+ .|+.+++||.|||++|.....-|+.|.++.+|..|.+.++++++.+|.
T Consensus 57 GL~eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 57 GLTEVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CcccCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 355666555 5667889999999999986 578899999999999887778888899999999999988888888875
Q ss_pred cccCCCCCceeecccccCcccC-ccccCCCCCCEeccccCcCCCccCc-cccCCCCCceeeccCcc
Q 041071 92 TVISVEDLSELFLDRTSITEVP-SSIELLTKLQWLNLNDCRSLVRLPS-SINGLTSLKTLNLSGCF 155 (535)
Q Consensus 92 ~l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~ 155 (535)
.++.+..|+.|.+.-|++..++ ..+..+++|..|.+.+|.. ..++. .+..+.+++++.+..|.
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCc
Confidence 4677888888888888888654 4677888888888887653 44444 56677778877776654
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.38 E-value=1.2e-14 Score=142.30 Aligned_cols=283 Identities=20% Similarity=0.211 Sum_probs=162.6
Q ss_pred eccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeeccc-ccCccc
Q 041071 34 DGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDR-TSITEV 112 (535)
Q Consensus 34 ~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~-~~i~~l 112 (535)
++..+.++|..+ -..-..|+|..|.....-|..|..+++|+.|||+.|.....-|..+..+..|..|-+.+ |.|+++
T Consensus 54 r~~GL~eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 54 RGKGLTEVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred cCCCcccCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence 345566666543 23455566665443333334566777777777777666666667777777766666655 677777
Q ss_pred Cc-cccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchh-hhhccccccEEEecCccccC--------
Q 041071 113 PS-SIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPE-TLRQIESLEKLDISGTAIRQ-------- 182 (535)
Q Consensus 113 p~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~-------- 182 (535)
|. .++.|..|+.|.+.-|+......+.+..+++|..|.+.+| ..+.++. .+..+..++.+.+..|.+..
T Consensus 132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla 210 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLA 210 (498)
T ss_pred hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhh
Confidence 65 3666666666666666555555555666666666666665 3444443 45556666666665554220
Q ss_pred -----CCcccccCCCCcEEEcCCCCCCCCCCccccccccccc--cc-cCCCcccccC-CcccCCCCCCEEecCCCCCCCC
Q 041071 183 -----PLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLM--RW-SSNPVALSFP-SSLSGLCSLTKLDISDCDLGEG 253 (535)
Q Consensus 183 -----~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l--~l-~~n~~~~~lp-~~l~~l~~L~~L~Ls~~~l~~~ 253 (535)
.|..++......-..+...+.....+.-+... ++.+ .+ +.+......| ..|..+++|++|+|++|.++ +
T Consensus 211 ~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~-~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~ 288 (498)
T KOG4237|consen 211 DDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS-LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-R 288 (498)
T ss_pred hHHhhchhhcccceecchHHHHHHHhcccchhhhhhh-HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-h
Confidence 01111111111111111111110000000000 1111 11 1111222222 24788999999999999995 4
Q ss_pred CCCCCCCCCCCCCEEeCCCCcCCCCCh-hhcCCCCCcEEeccCCcccccCCCCCCCcceEeccCccccccccccccc
Q 041071 254 AIPSSIGDLCSLEELHLSGNNFFTLPA-SIYRLSSLLGIDLKECKMLQNLPRLPASIHWISLNGCVSLETLSDVLNL 329 (535)
Q Consensus 254 ~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~~~~C~sL~~l~~~~n~ 329 (535)
.-+.+|..+..+++|.|.+|++..+-. .+.++..|+.|+|.+|+...--|... .--.+|.++....|+
T Consensus 289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF--------~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF--------QTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc--------cccceeeeeehccCc
Confidence 566789999999999999999997765 56789999999999999766555432 233455555555444
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.32 E-value=3.3e-12 Score=143.13 Aligned_cols=187 Identities=28% Similarity=0.353 Sum_probs=124.7
Q ss_pred CCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCC-CCccC-cccCCCCCCCEEeccCCCCCccCcccccC
Q 041071 18 FPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRN-LTTLP-ITIGNLECLQTLVLSGCSKIVKFPETVIS 95 (535)
Q Consensus 18 lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~-l~~lp-~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~ 95 (535)
.|... .....+...+-++.+..++.... .++|++|-+.++.. +..++ ..|..++.|+.|||++|..+..+|..++.
T Consensus 516 ~~~~~-~~~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 516 IPQVK-SWNSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred ccccc-chhheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence 44433 45666777777777777766543 34788877777652 33333 33666888888888888888888888888
Q ss_pred CCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCcc--CCCCchhhhhccccccEE
Q 041071 96 VEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCF--KLENVPETLRQIESLEKL 173 (535)
Q Consensus 96 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~--~l~~lp~~l~~l~~L~~L 173 (535)
+-+||+|+++++.++.+|.++++|++|.+|++..+..+..+|..+..+.+|++|.+..-. .....-..+.++++|+.+
T Consensus 594 Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~l 673 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENL 673 (889)
T ss_pred hhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhh
Confidence 888888888888888888888888888888888777666666656668888888775432 112222334444444444
Q ss_pred EecCc--------------------------cccCCCcccccCCCCcEEEcCCCCCCCC
Q 041071 174 DISGT--------------------------AIRQPLSSIFLMKNLKELSCRGCKGSPS 206 (535)
Q Consensus 174 ~L~~~--------------------------~i~~~~~~i~~l~~L~~L~L~~~~~~~~ 206 (535)
..... .....+.++..+.+|+.|.+.+|.....
T Consensus 674 s~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 674 SITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEI 732 (889)
T ss_pred eeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchh
Confidence 44332 2233455667788888888888887544
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.25 E-value=2.7e-12 Score=143.85 Aligned_cols=227 Identities=27% Similarity=0.414 Sum_probs=141.6
Q ss_pred CCCcEEecCCCcC-CCCCC-cccCCCCcCcEEEeec-cCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEE
Q 041071 2 ESLKTLVLSGCSK-LKKFP-DIVGGMECLQELRVDG-TDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTL 78 (535)
Q Consensus 2 ~~L~~L~Ls~~~~-l~~lp-~~~~~~~~L~~L~L~~-~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L 78 (535)
++|++|-+.++.. +..++ ++|..++.|++|||++ ..+.++|.+|+.|.+||+|++++ ..+..+|..+++++.|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhhee
Confidence 4577888877752 44444 6677889999999986 45778999999999999999987 4477888888889999999
Q ss_pred eccCCCCCccCcccccCCCCCceeecccccCcccC---ccccCCCCCCEeccccCcCCCccCccccCCCCCc----eeec
Q 041071 79 VLSGCSKIVKFPETVISVEDLSELFLDRTSITEVP---SSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLK----TLNL 151 (535)
Q Consensus 79 ~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp---~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~----~L~L 151 (535)
++..+..+..+|.....|.+|++|.+.......-. ..+..+..|+.+....... .+-..+..+..|. .+.+
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~ 701 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSI 701 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhh
Confidence 99888777777777778899999988776533211 2234455555554433221 1111122233333 2232
Q ss_pred cCccCCCCchhhhhccccccEEEecCccccCCCcc------ccc-CCCCcEEEcCCCCCCCCCCccccccccccccccCC
Q 041071 152 SGCFKLENVPETLRQIESLEKLDISGTAIRQPLSS------IFL-MKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSN 224 (535)
Q Consensus 152 s~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~~------i~~-l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n 224 (535)
.+| .....+..+..+.+|+.|.+.++.+.+.... ... ++++..+.+.+|.....
T Consensus 702 ~~~-~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~------------------ 762 (889)
T KOG4658|consen 702 EGC-SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD------------------ 762 (889)
T ss_pred ccc-ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc------------------
Confidence 232 3345556677888888888888877643210 011 23344444444443322
Q ss_pred CcccccCCcccCCCCCCEEecCCCCCCCCCCC
Q 041071 225 PVALSFPSSLSGLCSLTKLDISDCDLGEGAIP 256 (535)
Q Consensus 225 ~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp 256 (535)
+.+.--.++|+.|.+..|...++.+|
T Consensus 763 ------l~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 763 ------LTWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred ------cchhhccCcccEEEEecccccccCCC
Confidence 22223346888888888877654444
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.16 E-value=6.7e-11 Score=123.48 Aligned_cols=197 Identities=33% Similarity=0.481 Sum_probs=145.2
Q ss_pred EEeccCCCCCccCcccccCCCCCceeecccccCcccCccccCCC-CCCEeccccCcCCCccCccccCCCCCceeeccCcc
Q 041071 77 TLVLSGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLT-KLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCF 155 (535)
Q Consensus 77 ~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~-~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~ 155 (535)
.+++.++.. ......+..++.++.|++.++.+.+++...+.+. +|+.|+++++. +..+|..+..+++|+.|+++.|
T Consensus 97 ~l~~~~~~~-~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N- 173 (394)
T COG4886 97 SLDLNLNRL-RSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN- 173 (394)
T ss_pred eeecccccc-ccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc-
Confidence 466666443 2223334455778888888888888888888885 88888888865 4566666788888999988888
Q ss_pred CCCCchhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCccc
Q 041071 156 KLENVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLS 235 (535)
Q Consensus 156 ~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~ 235 (535)
.+..+|...+..+.|+.|++++|.+..+|..+..+..|++|.++++... ..+..+.
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~------------------------~~~~~~~ 229 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII------------------------ELLSSLS 229 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce------------------------ecchhhh
Confidence 5677777666788888899999988888887777777888888877522 2333466
Q ss_pred CCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChhhcCCCCCcEEeccCCcccccCC
Q 041071 236 GLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLKECKMLQNLP 303 (535)
Q Consensus 236 ~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 303 (535)
.+.++..|.+.++.+.. ++..++.+++|+.|++++|.+..++. +..+.+|+.|+++++.....+|
T Consensus 230 ~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 230 NLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hcccccccccCCceeee--ccchhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 66777777777777643 46677777888888888888888876 7778888888888887665544
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=3.2e-12 Score=130.65 Aligned_cols=213 Identities=25% Similarity=0.380 Sum_probs=160.1
Q ss_pred CCEEeccCCCCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCc
Q 041071 75 LQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGC 154 (535)
Q Consensus 75 L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c 154 (535)
-...+|+. +.+..+|..+..+..|+.+.|+.|.+..+|..+.++..|.+|+|+.|+ +..+|..++.|+ |+.|.+++|
T Consensus 77 t~~aDlsr-NR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 77 TVFADLSR-NRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhhccc-cccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecC
Confidence 34566666 456777888888888888888888888888888888888888888865 466777788665 888888876
Q ss_pred cCCCCchhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcc
Q 041071 155 FKLENVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSL 234 (535)
Q Consensus 155 ~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l 234 (535)
+++.+|+.++....|..|+.+.|.+..+|+.++++.+|+.|.+..|+... +|..+
T Consensus 154 -kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~------------------------lp~El 208 (722)
T KOG0532|consen 154 -KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED------------------------LPEEL 208 (722)
T ss_pred -ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh------------------------CCHHH
Confidence 78888888888888888899999888888888888888888887776543 33334
Q ss_pred cCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChhhcC---CCCCcEEeccCCcccccCCCCCCCcce
Q 041071 235 SGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPASIYR---LSSLLGIDLKECKMLQNLPRLPASIHW 311 (535)
Q Consensus 235 ~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~---l~~L~~L~L~~c~~L~~lp~lp~sL~~ 311 (535)
..+ .|..||++.|++.. +|..|..+..|++|-|.+|.+.+=|+.|.. ..-.++|++.-|+ -+.-+.++..++-
T Consensus 209 ~~L-pLi~lDfScNkis~--iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q-~~~a~~~~t~~RP 284 (722)
T KOG0532|consen 209 CSL-PLIRLDFSCNKISY--LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ-SGGALDLYTTLRP 284 (722)
T ss_pred hCC-ceeeeecccCceee--cchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc-ccCCcccccccCC
Confidence 422 48889999998876 899999999999999999999988886643 4456788888885 3333344444443
Q ss_pred EeccCccc
Q 041071 312 ISLNGCVS 319 (535)
Q Consensus 312 L~~~~C~s 319 (535)
..+..|.-
T Consensus 285 ~~~~~c~~ 292 (722)
T KOG0532|consen 285 RHFSSCHV 292 (722)
T ss_pred cccCCcch
Confidence 34444543
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=1.3e-10 Score=121.40 Aligned_cols=194 Identities=31% Similarity=0.464 Sum_probs=146.2
Q ss_pred EecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchhhhcCC-CccEEeccCCCCCCccCcccCCCCCCCEEeccCCCC
Q 041071 7 LVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVSIELMS-GLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSK 85 (535)
Q Consensus 7 L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~-~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~ 85 (535)
++++.+.....+.. ....+.+..|++.++.+.+++.....+. +|+.|+++++. +..+|..++.+++|+.|+++.| .
T Consensus 98 l~~~~~~~~~~~~~-~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N-~ 174 (394)
T COG4886 98 LDLNLNRLRSNISE-LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN-D 174 (394)
T ss_pred eeccccccccCchh-hhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc-h
Confidence 55555543233332 2255778888888888888888877775 89999998854 5666555778889999999885 4
Q ss_pred CccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhh
Q 041071 86 IVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLR 165 (535)
Q Consensus 86 l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~ 165 (535)
+..+|...+.+++|+.|++++|.+..+|..++.+..|++|.+.+|. ....+..+.+++++..|.+.++ .+..++..++
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~~~ 252 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNN-KLEDLPESIG 252 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCc-eeeeccchhc
Confidence 6667777668888899999999999888887777788888888875 3344555777888888887666 4555577788
Q ss_pred ccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCC
Q 041071 166 QIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPS 206 (535)
Q Consensus 166 ~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~ 206 (535)
.+.+++.|++++|.+..++. ++.+.+|+.|+++++.....
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cccccceecccccccccccc-ccccCccCEEeccCcccccc
Confidence 88888999999988888777 78888888888888776543
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.9e-11 Score=120.31 Aligned_cols=206 Identities=23% Similarity=0.207 Sum_probs=126.2
Q ss_pred CCCCCCEEeccCCCCCccCc--ccccCCCCCceeecccccCcc---cCccccCCCCCCEeccccCcCCCccCccc-cCCC
Q 041071 71 NLECLQTLVLSGCSKIVKFP--ETVISVEDLSELFLDRTSITE---VPSSIELLTKLQWLNLNDCRSLVRLPSSI-NGLT 144 (535)
Q Consensus 71 ~l~~L~~L~Ls~c~~l~~~p--~~l~~l~~L~~L~L~~~~i~~---lp~~i~~l~~L~~L~L~~c~~l~~lp~~i-~~l~ 144 (535)
++.+|+...|.+|. ....+ .....+++++.|+|++|-+.. +-..+..|++|+.|+++.|+...-..+.. ..++
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 34555555555432 22222 244556667777777665553 33445677778888877766543222111 2366
Q ss_pred CCceeeccCccCC-CCchhhhhccccccEEEecCcc-ccCCCcccccCCCCcEEEcCCCCCCCCCCcccccccccccccc
Q 041071 145 SLKTLNLSGCFKL-ENVPETLRQIESLEKLDISGTA-IRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWS 222 (535)
Q Consensus 145 ~L~~L~Ls~c~~l-~~lp~~l~~l~~L~~L~L~~~~-i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~ 222 (535)
.|+.|.|++|... ..+-..+..+++|+.|++.+|. +..-..+...+..|+.|+|++|......
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~--------------- 262 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD--------------- 262 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc---------------
Confidence 7788888888543 2233445567778888887773 2222233344666777777777655432
Q ss_pred CCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCC-----CCCCCCCCEEeCCCCcCCCCCh--hhcCCCCCcEEeccC
Q 041071 223 SNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSS-----IGDLCSLEELHLSGNNFFTLPA--SIYRLSSLLGIDLKE 295 (535)
Q Consensus 223 ~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~-----l~~l~~L~~L~Ls~n~l~~lp~--~i~~l~~L~~L~L~~ 295 (535)
.+ ...+.++.|+.|+++.|.+.+-.+|+. ...+++|++|+++.|++...+. .+..+++|+.|.+..
T Consensus 263 ------~~-~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 263 ------QG-YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred ------cc-cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 11 126677888888888888877666655 4567888999998888876653 455667777777776
Q ss_pred Cccc
Q 041071 296 CKML 299 (535)
Q Consensus 296 c~~L 299 (535)
+..-
T Consensus 336 n~ln 339 (505)
T KOG3207|consen 336 NYLN 339 (505)
T ss_pred cccc
Confidence 6543
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=5.9e-11 Score=112.71 Aligned_cols=223 Identities=22% Similarity=0.232 Sum_probs=144.4
Q ss_pred hhcCCCccEEeccCCC--------CCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecccccCcccCccc
Q 041071 45 IELMSGLVSLNLKDCR--------NLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSI 116 (535)
Q Consensus 45 i~~l~~L~~L~Ls~~~--------~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i 116 (535)
+..+..|++|..++.. ....+|-.+.-+++|..+.++.|. .+.+-.....-+.|+++.+.++.+...|.-+
T Consensus 178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~ 256 (490)
T KOG1259|consen 178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTTIQDVPSLL 256 (490)
T ss_pred HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeeccccccccccc
Confidence 3445667777666432 112334334456778888888764 2333333344567778887777766544321
Q ss_pred cCCCCCCEecccc-CcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccccCCCcccccCCCCcE
Q 041071 117 ELLTKLQWLNLND-CRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKE 195 (535)
Q Consensus 117 ~~l~~L~~L~L~~-c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~ 195 (535)
..+.+....... ....+.+...+..++.|++|+|++| .+..+.++..-.+.++.|+++.|.+..+-. +..+++|+.
T Consensus 257 -pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~ 333 (490)
T KOG1259|consen 257 -PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQL 333 (490)
T ss_pred -chhhhcCccCCCCCccCCceEEecchHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceE
Confidence 112222211111 1111222233445778999999998 567777888888999999999999987655 888999999
Q ss_pred EEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcC
Q 041071 196 LSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNF 275 (535)
Q Consensus 196 L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l 275 (535)
|++++|...... .|=..+-+.+.|.|+.|.+- -...++.+-+|..||+++|++
T Consensus 334 LDLS~N~Ls~~~------------------------Gwh~KLGNIKtL~La~N~iE---~LSGL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 334 LDLSGNLLAECV------------------------GWHLKLGNIKTLKLAQNKIE---TLSGLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred eecccchhHhhh------------------------hhHhhhcCEeeeehhhhhHh---hhhhhHhhhhheeccccccch
Confidence 999998754332 22234557788888888763 234566677888888888888
Q ss_pred CCCCh--hhcCCCCCcEEeccCCcc
Q 041071 276 FTLPA--SIYRLSSLLGIDLKECKM 298 (535)
Q Consensus 276 ~~lp~--~i~~l~~L~~L~L~~c~~ 298 (535)
..+.. .|+++|.|+.+.+.+|+.
T Consensus 387 e~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 387 EELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhHHHhcccccccHHHHHhhcCCCc
Confidence 86654 688888888888888875
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=7.3e-11 Score=117.45 Aligned_cols=208 Identities=18% Similarity=0.162 Sum_probs=144.2
Q ss_pred hcCCCccEEeccCCCCCCccC--cccCCCCCCCEEeccCCCCC--ccCcccccCCCCCceeecccccCcccCcc--ccCC
Q 041071 46 ELMSGLVSLNLKDCRNLTTLP--ITIGNLECLQTLVLSGCSKI--VKFPETVISVEDLSELFLDRTSITEVPSS--IELL 119 (535)
Q Consensus 46 ~~l~~L~~L~Ls~~~~l~~lp--~~l~~l~~L~~L~Ls~c~~l--~~~p~~l~~l~~L~~L~L~~~~i~~lp~~--i~~l 119 (535)
.++.+|+.+.|.++. ....+ .....|++++.|||++|-.. ..+-.....+++|+.|+|+.|.+....++ -..+
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 467778888887654 22222 23455788888888875332 22345567788888888888887744333 2357
Q ss_pred CCCCEeccccCcCCCc-cCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccccCCC--cccccCCCCcEE
Q 041071 120 TKLQWLNLNDCRSLVR-LPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPL--SSIFLMKNLKEL 196 (535)
Q Consensus 120 ~~L~~L~L~~c~~l~~-lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~--~~i~~l~~L~~L 196 (535)
+.|+.|.++.|...-. +...+..+++|+.|.+.+|............++.|++|+|++|++...+ ..++.++.|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 7888999999876522 2223446889999999988544333334455678899999999988666 667889999999
Q ss_pred EcCCCCCCCCCCccccccccccccccCCCcccccCCc-----ccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCC
Q 041071 197 SCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSS-----LSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLS 271 (535)
Q Consensus 197 ~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~-----l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls 271 (535)
+++.|...... .|+. ...+++|++|++..|++.+-.-...+..+.+|+.|.+.
T Consensus 277 nls~tgi~si~----------------------~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 277 NLSSTGIASIA----------------------EPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred hccccCcchhc----------------------CCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 99888755331 2221 35678999999999999663344566778888999888
Q ss_pred CCcCC
Q 041071 272 GNNFF 276 (535)
Q Consensus 272 ~n~l~ 276 (535)
+|.+.
T Consensus 335 ~n~ln 339 (505)
T KOG3207|consen 335 LNYLN 339 (505)
T ss_pred ccccc
Confidence 88776
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.96 E-value=2.7e-11 Score=117.53 Aligned_cols=246 Identities=21% Similarity=0.243 Sum_probs=144.4
Q ss_pred cCCCCcCcEEEeeccCCc-----ccchhhhcCCCccEEeccCCCCCC----ccCc-------ccCCCCCCCEEeccCCCC
Q 041071 22 VGGMECLQELRVDGTDIK-----ELPVSIELMSGLVSLNLKDCRNLT----TLPI-------TIGNLECLQTLVLSGCSK 85 (535)
Q Consensus 22 ~~~~~~L~~L~L~~~~l~-----~l~~~i~~l~~L~~L~Ls~~~~l~----~lp~-------~l~~l~~L~~L~Ls~c~~ 85 (535)
...+..+++|+|+||.+. .+...+.+.+.|+..++++- ... .+|+ .+-.++.|++|+||+|..
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 345677788888887775 34445666777777777752 111 2222 223355666666666543
Q ss_pred CccCc----ccccCCCCCceeecccccCcccCc-cccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCC---
Q 041071 86 IVKFP----ETVISVEDLSELFLDRTSITEVPS-SIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKL--- 157 (535)
Q Consensus 86 l~~~p----~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l--- 157 (535)
-...+ ..+.++..|++|+|.+|.+...-- .++ ..|..|. ...-+..-+.|+++....|...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA---------VNKKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH---------HHhccCCCcceEEEEeecccccccc
Confidence 32222 222334444444444444431110 000 0011110 0111234566778777776332
Q ss_pred -CCchhhhhccccccEEEecCccccC-----CCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccC
Q 041071 158 -ENVPETLRQIESLEKLDISGTAIRQ-----PLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFP 231 (535)
Q Consensus 158 -~~lp~~l~~l~~L~~L~L~~~~i~~-----~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp 231 (535)
..+...+...+.|+.+.+..|.|.. +...+.++++|+.|++.+|......+ ..+.
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs-------------------~~La 234 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS-------------------VALA 234 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH-------------------HHHH
Confidence 1233556677888888888887762 22456678888888888876543211 1233
Q ss_pred CcccCCCCCCEEecCCCCCCCCCC---CCCC-CCCCCCCEEeCCCCcCC-----CCChhhcCCCCCcEEeccCCcc
Q 041071 232 SSLSGLCSLTKLDISDCDLGEGAI---PSSI-GDLCSLEELHLSGNNFF-----TLPASIYRLSSLLGIDLKECKM 298 (535)
Q Consensus 232 ~~l~~l~~L~~L~Ls~~~l~~~~l---p~~l-~~l~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~~ 298 (535)
..++.+++|++|++++|.+.+... ...+ ...++|+.|.+.+|.++ .+-.++...+.|+.|+|++|+.
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 456778899999999998865321 1111 23789999999999987 3455677789999999999986
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.92 E-value=5.9e-11 Score=121.55 Aligned_cols=189 Identities=26% Similarity=0.409 Sum_probs=132.4
Q ss_pred EEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCC
Q 041071 6 TLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSK 85 (535)
Q Consensus 6 ~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~ 85 (535)
..||+.|. ...+|..+..+..|+.|.|..|.+..+|..++++..|.+|||+.|. +..+|..++.|+ |+.|.+++ ++
T Consensus 79 ~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sN-Nk 154 (722)
T KOG0532|consen 79 FADLSRNR-FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSN-NK 154 (722)
T ss_pred hhhccccc-cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEec-Cc
Confidence 34566653 3456655556777777777777777788778888888888887744 566676666443 77777776 56
Q ss_pred CccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhh
Q 041071 86 IVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLR 165 (535)
Q Consensus 86 l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~ 165 (535)
++.+|+.++.+..|..|+.+.|.+..+|+.++.+.+|+.|++..|. +..+|..++.| .|..||++.| ++..+|..|.
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScN-kis~iPv~fr 231 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCN-KISYLPVDFR 231 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccC-ceeecchhhh
Confidence 7777777777777888888888888888888888888888777754 44566666633 4777787755 6777787888
Q ss_pred ccccccEEEecCccccCCCcccccC---CCCcEEEcCCC
Q 041071 166 QIESLEKLDISGTAIRQPLSSIFLM---KNLKELSCRGC 201 (535)
Q Consensus 166 ~l~~L~~L~L~~~~i~~~~~~i~~l---~~L~~L~L~~~ 201 (535)
+|+.|++|-|..|.+...|..|... .=.++|+..-|
T Consensus 232 ~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 8888888888888877776655432 22455666555
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.83 E-value=7.5e-10 Score=105.30 Aligned_cols=176 Identities=25% Similarity=0.281 Sum_probs=108.0
Q ss_pred CCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCC---ccCc--------------------ccCCCCCCCEEec
Q 041071 24 GMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLT---TLPI--------------------TIGNLECLQTLVL 80 (535)
Q Consensus 24 ~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~---~lp~--------------------~l~~l~~L~~L~L 80 (535)
-+++|..+.++.+.-+.|-.-...-+.|+++...+..... .+|. .+.....|++|||
T Consensus 212 ~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDL 291 (490)
T KOG1259|consen 212 AFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDL 291 (490)
T ss_pred HhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccc
Confidence 4566777777765544443322233556666665432111 1111 1112345777778
Q ss_pred cCCCCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCc
Q 041071 81 SGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENV 160 (535)
Q Consensus 81 s~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l 160 (535)
++| .+..+.+++.-++.++.|+++.|.|..+.. ++.+++|+.|+|++|. +..+..+-..+.++++|+|++| .++.+
T Consensus 292 S~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~N-~iE~L 367 (490)
T KOG1259|consen 292 SGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQN-KIETL 367 (490)
T ss_pred ccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhhh-hHhhh
Confidence 774 455666666677778888888887777765 7777788888887764 3344444445677777777776 33433
Q ss_pred hhhhhccccccEEEecCccccCC--CcccccCCCCcEEEcCCCCCC
Q 041071 161 PETLRQIESLEKLDISGTAIRQP--LSSIFLMKNLKELSCRGCKGS 204 (535)
Q Consensus 161 p~~l~~l~~L~~L~L~~~~i~~~--~~~i~~l~~L~~L~L~~~~~~ 204 (535)
..++.+-+|..|++++|+|.++ ...|+.++.|+.+.+.+|...
T Consensus 368 -SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 368 -SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred -hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 3466667777888888877743 356777777777777776644
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.78 E-value=3.8e-09 Score=96.13 Aligned_cols=112 Identities=25% Similarity=0.379 Sum_probs=30.2
Q ss_pred CCCCCcccCCCCcCcEEEeeccCCcccchhhh-cCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccc
Q 041071 15 LKKFPDIVGGMECLQELRVDGTDIKELPVSIE-LMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETV 93 (535)
Q Consensus 15 l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~-~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l 93 (535)
+...|... ++..+++|+|.++.|..+. .++ .+.+|+.|++++|. ++.+.. +..++.|+.|++++|. +..+.+.+
T Consensus 9 i~~~~~~~-n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~-l~~L~~L~~L~L~~N~-I~~i~~~l 83 (175)
T PF14580_consen 9 IEQIAQYN-NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEG-LPGLPRLKTLDLSNNR-ISSISEGL 83 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHH
T ss_pred cccccccc-ccccccccccccccccccc-chhhhhcCCCEEECCCCC-CccccC-ccChhhhhhcccCCCC-CCccccch
Confidence 33444444 6667888888888887774 454 57788888888765 444543 6667777777777754 33443333
Q ss_pred -cCCCCCceeecccccCcccCc--cccCCCCCCEeccccCc
Q 041071 94 -ISVEDLSELFLDRTSITEVPS--SIELLTKLQWLNLNDCR 131 (535)
Q Consensus 94 -~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~ 131 (535)
..+++|++|++++|.|..+.. .++.+++|+.|++.+|.
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 346777777777777765432 34455555555555554
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.73 E-value=5.1e-10 Score=108.75 Aligned_cols=247 Identities=21% Similarity=0.204 Sum_probs=155.6
Q ss_pred CCCcEEecCCCcCCCC----CCcccCCCCcCcEEEeec--c-C-Ccccchhh-------hcCCCccEEeccCCCCCCccC
Q 041071 2 ESLKTLVLSGCSKLKK----FPDIVGGMECLQELRVDG--T-D-IKELPVSI-------ELMSGLVSLNLKDCRNLTTLP 66 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~----lp~~~~~~~~L~~L~L~~--~-~-l~~l~~~i-------~~l~~L~~L~Ls~~~~l~~lp 66 (535)
..++.|+||||.+-.. +...+...++|++.++++ + + ..++|+.+ ...++|++||||+|..-..-+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 4688999999976543 445566778999999987 2 2 23666553 456799999999987654433
Q ss_pred c----ccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCC----ccCc
Q 041071 67 I----TIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLV----RLPS 138 (535)
Q Consensus 67 ~----~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~----~lp~ 138 (535)
. .+.++..|++|.|.+|-.-..-...++. .|..|. .-.-++.-++|+.+....|..-. .+..
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~ 179 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--------VNKKAASKPKLRVFICGRNRLENGGATALAE 179 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--------HHhccCCCcceEEEEeeccccccccHHHHHH
Confidence 3 3457899999999998643221111110 011111 11223445667777666654321 1223
Q ss_pred cccCCCCCceeeccCccCC----CCchhhhhccccccEEEecCccccC-----CCcccccCCCCcEEEcCCCCCCCCCCc
Q 041071 139 SINGLTSLKTLNLSGCFKL----ENVPETLRQIESLEKLDISGTAIRQ-----PLSSIFLMKNLKELSCRGCKGSPSSAS 209 (535)
Q Consensus 139 ~i~~l~~L~~L~Ls~c~~l----~~lp~~l~~l~~L~~L~L~~~~i~~-----~~~~i~~l~~L~~L~L~~~~~~~~~~~ 209 (535)
.+...+.|+.+.+..|... ..+...+..+++|+.|++.+|.++. +...+..+++|+.|++++|........
T Consensus 180 ~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~ 259 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI 259 (382)
T ss_pred HHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH
Confidence 3455677788877776433 2344667888889999998887772 334556678889999988875543221
Q ss_pred cccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCC---CCCCCCCCCCCCEEeCCCCcCC
Q 041071 210 WFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGA---IPSSIGDLCSLEELHLSGNNFF 276 (535)
Q Consensus 210 ~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~---lp~~l~~l~~L~~L~Ls~n~l~ 276 (535)
.+ ....-...|+|+.|.+.+|.++.+. +...+...+.|+.|+|++|.+.
T Consensus 260 a~------------------~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 260 AF------------------VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HH------------------HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 11 0111223678999999999886432 2233455789999999999883
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.72 E-value=8.6e-09 Score=93.77 Aligned_cols=60 Identities=28% Similarity=0.376 Sum_probs=16.5
Q ss_pred CCCCCEEecCCCCCCCCCCCCCC-CCCCCCCEEeCCCCcCCCCCh--hhcCCCCCcEEeccCCcc
Q 041071 237 LCSLTKLDISDCDLGEGAIPSSI-GDLCSLEELHLSGNNFFTLPA--SIYRLSSLLGIDLKECKM 298 (535)
Q Consensus 237 l~~L~~L~Ls~~~l~~~~lp~~l-~~l~~L~~L~Ls~n~l~~lp~--~i~~l~~L~~L~L~~c~~ 298 (535)
++.|++|++++|.+++ +...+ ..+++|++|++++|++..+-. .+..+++|+.|++.+|+.
T Consensus 63 L~~L~~L~L~~N~I~~--i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 63 LPRLKTLDLSNNRISS--ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp -TT--EEE--SS---S---CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred hhhhhhcccCCCCCCc--cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 3444444444444432 22222 124445555555554443221 334455555555555554
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2e-10 Score=109.06 Aligned_cols=156 Identities=21% Similarity=0.208 Sum_probs=106.0
Q ss_pred CCceeecccccCc--ccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCch--hhhhccccccEE
Q 041071 98 DLSELFLDRTSIT--EVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVP--ETLRQIESLEKL 173 (535)
Q Consensus 98 ~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp--~~l~~l~~L~~L 173 (535)
.|++|||++..|+ .+.-.+..+.+|+.|.+.+...-..+...+..-.+|+.|++++|+.+.+.. -.+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5899999999887 566678889999999999988777777778888999999999998886654 457889999999
Q ss_pred EecCccccC--CCccccc-CCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCC
Q 041071 174 DISGTAIRQ--PLSSIFL-MKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDL 250 (535)
Q Consensus 174 ~L~~~~i~~--~~~~i~~-l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l 250 (535)
++++|.+.. +...+.+ -++|+.|+++||...-.. + .+......+|+|..|||++|..
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~----------------s----h~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK----------------S----HLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh----------------h----HHHHHHHhCCceeeeccccccc
Confidence 999997762 2122222 367888888887632110 0 1111234567777777777754
Q ss_pred CCCCCCCCCCCCCCCCEEeCCCC
Q 041071 251 GEGAIPSSIGDLCSLEELHLSGN 273 (535)
Q Consensus 251 ~~~~lp~~l~~l~~L~~L~Ls~n 273 (535)
........+..++.|++|.++.|
T Consensus 326 l~~~~~~~~~kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 326 LKNDCFQEFFKFNYLQHLSLSRC 348 (419)
T ss_pred cCchHHHHHHhcchheeeehhhh
Confidence 33222233334444444444444
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.60 E-value=9.2e-10 Score=109.22 Aligned_cols=278 Identities=21% Similarity=0.247 Sum_probs=177.0
Q ss_pred CCcEEecCCCcCCCCCC--cccCCCCcCcEEEeeccC-Cccc--chhhhcCCCccEEeccCCCCCCccC--cccCCCCCC
Q 041071 3 SLKTLVLSGCSKLKKFP--DIVGGMECLQELRVDGTD-IKEL--PVSIELMSGLVSLNLKDCRNLTTLP--ITIGNLECL 75 (535)
Q Consensus 3 ~L~~L~Ls~~~~l~~lp--~~~~~~~~L~~L~L~~~~-l~~l--~~~i~~l~~L~~L~Ls~~~~l~~lp--~~l~~l~~L 75 (535)
.||.|.++||.-.+.-+ .+..++++++.|.+.++. +++. -..-..+++|++|++..|..++... .....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 57889999987765433 566789999999998854 3321 1123578999999999988776432 113458999
Q ss_pred CEEeccCCCCCcc--CcccccCCCCCceeecccccCc---ccCccccCCCCCCEeccccCcCCCccC--ccccCCCCCce
Q 041071 76 QTLVLSGCSKIVK--FPETVISVEDLSELFLDRTSIT---EVPSSIELLTKLQWLNLNDCRSLVRLP--SSINGLTSLKT 148 (535)
Q Consensus 76 ~~L~Ls~c~~l~~--~p~~l~~l~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~c~~l~~lp--~~i~~l~~L~~ 148 (535)
++|++++|..+.. +-.....+..++.+.+.|+.=. .+-..-+....+..+++..|..+.... ..-+.+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 9999999987654 2233455666777766654221 222223455566677777775554332 11245777888
Q ss_pred eeccCccCCCCchh-h-hhccccccEEEecCccc-cC--CCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccC
Q 041071 149 LNLSGCFKLENVPE-T-LRQIESLEKLDISGTAI-RQ--PLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSS 223 (535)
Q Consensus 149 L~Ls~c~~l~~lp~-~-l~~l~~L~~L~L~~~~i-~~--~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~ 223 (535)
|..++|..+...+- . ..+..+|+.|-+.+|.- +. ...--.+++.|+.+++.+|....+.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~---------------- 362 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG---------------- 362 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh----------------
Confidence 88888877644332 2 34567888888888753 21 1122234678888888888765442
Q ss_pred CCcccccCCcccCCCCCCEEecCCCCCCCCC----CCCCCCCCCCCCEEeCCCCcCC--CCChhhcCCCCCcEEeccCCc
Q 041071 224 NPVALSFPSSLSGLCSLTKLDISDCDLGEGA----IPSSIGDLCSLEELHLSGNNFF--TLPASIYRLSSLLGIDLKECK 297 (535)
Q Consensus 224 n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~----lp~~l~~l~~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c~ 297 (535)
.+...-.+++.|+.|.|++|.+.++. +...-..+..|+.|.|+++... ..-..+..++.|+.+++-+|+
T Consensus 363 -----tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 363 -----TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred -----hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 22233456788888888888654322 1122234567888888888765 333456677888888888888
Q ss_pred cccc
Q 041071 298 MLQN 301 (535)
Q Consensus 298 ~L~~ 301 (535)
....
T Consensus 438 ~vtk 441 (483)
T KOG4341|consen 438 DVTK 441 (483)
T ss_pred hhhh
Confidence 7654
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.8e-09 Score=102.74 Aligned_cols=179 Identities=25% Similarity=0.276 Sum_probs=100.5
Q ss_pred cCcEEEeeccCCc--ccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeec
Q 041071 27 CLQELRVDGTDIK--ELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFL 104 (535)
Q Consensus 27 ~L~~L~L~~~~l~--~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L 104 (535)
.|+.|||++..|+ ++..-+..+.+|+.|.+.+...-..+...+.+-.+|+.|+|++|+.+....
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~-------------- 251 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA-------------- 251 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH--------------
Confidence 4666677666655 444455666677777776655544444445556667777777766544322
Q ss_pred ccccCcccCccccCCCCCCEeccccCcCCCccCccc-c-CCCCCceeeccCccCC---CCchhhhhccccccEEEecCcc
Q 041071 105 DRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSI-N-GLTSLKTLNLSGCFKL---ENVPETLRQIESLEKLDISGTA 179 (535)
Q Consensus 105 ~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i-~-~l~~L~~L~Ls~c~~l---~~lp~~l~~l~~L~~L~L~~~~ 179 (535)
+.-.+.+++.|..|+++.|.........+ . --+.|+.|+++||... ..+..-...+++|.+||+++|.
T Consensus 252 -------~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 252 -------LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred -------HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence 11224556666666666665443322111 1 1245666677766432 1122223456677777777664
Q ss_pred cc--CCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCC
Q 041071 180 IR--QPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDC 248 (535)
Q Consensus 180 i~--~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~ 248 (535)
.. +....+..++.|++|.++.|....... +- .+...|+|.+|++-+|
T Consensus 325 ~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~---------------------~~-~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 325 MLKNDCFQEFFKFNYLQHLSLSRCYDIIPET---------------------LL-ELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccCchHHHHHHhcchheeeehhhhcCCChHH---------------------ee-eeccCcceEEEEeccc
Confidence 33 334456667888888888887653311 00 1455677788877776
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.57 E-value=3e-07 Score=93.72 Aligned_cols=61 Identities=25% Similarity=0.550 Sum_probs=32.8
Q ss_pred CCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCch
Q 041071 96 VEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVP 161 (535)
Q Consensus 96 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp 161 (535)
+.+++.|++++|.++.+|. -..+|+.|.+++|..+..+|..+ .++|+.|++++|..+..+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 3445555555555555551 12346666666666666666543 2456666666665554444
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.55 E-value=3.1e-09 Score=105.49 Aligned_cols=271 Identities=23% Similarity=0.258 Sum_probs=180.2
Q ss_pred CcCcEEEeeccCC---cccchhhhcCCCccEEeccCCCCCCcc--CcccCCCCCCCEEeccCCCCCccC--cccccCCCC
Q 041071 26 ECLQELRVDGTDI---KELPVSIELMSGLVSLNLKDCRNLTTL--PITIGNLECLQTLVLSGCSKIVKF--PETVISVED 98 (535)
Q Consensus 26 ~~L~~L~L~~~~l---~~l~~~i~~l~~L~~L~Ls~~~~l~~l--p~~l~~l~~L~~L~Ls~c~~l~~~--p~~l~~l~~ 98 (535)
--|+.|.+.|+.= ..+-....+++++++|++.+|.+++.- -..-..+++|++|+|..|..++.. ......+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4578999988542 244444578999999999999876632 122245899999999999887653 234567899
Q ss_pred Cceeecccc-cCcc--cCccccCCCCCCEeccccCcCCCc--cCccccCCCCCceeeccCccCCCCch--hhhhcccccc
Q 041071 99 LSELFLDRT-SITE--VPSSIELLTKLQWLNLNDCRSLVR--LPSSINGLTSLKTLNLSGCFKLENVP--ETLRQIESLE 171 (535)
Q Consensus 99 L~~L~L~~~-~i~~--lp~~i~~l~~L~~L~L~~c~~l~~--lp~~i~~l~~L~~L~Ls~c~~l~~lp--~~l~~l~~L~ 171 (535)
|++|+++++ +|.. +..-...+..++.+.+++|.-... +-..-..+.-+.++++..|..+.... ..-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 999999986 3442 333455667788888888864331 11111235557777887887665433 3344577899
Q ss_pred EEEecCcccc-C-C-CcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCC
Q 041071 172 KLDISGTAIR-Q-P-LSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDC 248 (535)
Q Consensus 172 ~L~L~~~~i~-~-~-~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~ 248 (535)
.|+.+++.-. . + ..-..+..+|+.|-+.+|+..++.. +...-.+++.|+.|++..|
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~---------------------ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG---------------------FTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh---------------------hhhhhcCChhhhhhccccc
Confidence 9999887543 1 1 1234567999999999999654421 1111245788999999999
Q ss_pred CCCCCC-CCCCCCCCCCCCEEeCCCCcCC------CCChhhcCCCCCcEEeccCCcccccCCCCCCCcceEeccCccccc
Q 041071 249 DLGEGA-IPSSIGDLCSLEELHLSGNNFF------TLPASIYRLSSLLGIDLKECKMLQNLPRLPASIHWISLNGCVSLE 321 (535)
Q Consensus 249 ~l~~~~-lp~~l~~l~~L~~L~Ls~n~l~------~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~~~~C~sL~ 321 (535)
....+. +...-.+++.|+.|.|++|... .+..+-..+..|+.+.+++|+.+.+ ..|+. +..|++|+
T Consensus 357 ~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d-----~~Le~--l~~c~~Le 429 (483)
T KOG4341|consen 357 GLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD-----ATLEH--LSICRNLE 429 (483)
T ss_pred ceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH-----HHHHH--HhhCcccc
Confidence 764433 5455567899999999998654 2233445678899999999998654 22332 23455665
Q ss_pred ccc
Q 041071 322 TLS 324 (535)
Q Consensus 322 ~l~ 324 (535)
++.
T Consensus 430 ri~ 432 (483)
T KOG4341|consen 430 RIE 432 (483)
T ss_pred eee
Confidence 544
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.53 E-value=3.5e-07 Score=93.24 Aligned_cols=156 Identities=20% Similarity=0.307 Sum_probs=85.3
Q ss_pred CCCCceeeccCccCCCCchhhhhccccccEEEecCc-cccCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccc
Q 041071 143 LTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGT-AIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRW 221 (535)
Q Consensus 143 l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~-~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l 221 (535)
+..++.|++++| .+..+|. -..+|++|.+++| .++.+|..+ .++|+.|.+++|...
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L----------------- 107 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEI----------------- 107 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccc-----------------
Confidence 566666677666 5555552 2235666666653 333444332 345666666655422
Q ss_pred cCCCcccccCCcccCCCCCCEEecCCCCCCC-CCCCCCCCCCCCCCEEeCCCCcCC---CCChhhcCC-CCCcEEeccCC
Q 041071 222 SSNPVALSFPSSLSGLCSLTKLDISDCDLGE-GAIPSSIGDLCSLEELHLSGNNFF---TLPASIYRL-SSLLGIDLKEC 296 (535)
Q Consensus 222 ~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~-~~lp~~l~~l~~L~~L~Ls~n~l~---~lp~~i~~l-~~L~~L~L~~c 296 (535)
..+|. +|+.|+++.+.... ..+| ++|+.|.+.+++.. .+|. .+ ++|++|.+.+|
T Consensus 108 ------~sLP~------sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c 166 (426)
T PRK15386 108 ------SGLPE------SVRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGC 166 (426)
T ss_pred ------ccccc------ccceEEeCCCCCcccccCc------chHhheecccccccccccccc---ccCCcccEEEecCC
Confidence 12343 57777776554321 1233 35677777544321 1221 12 68999999999
Q ss_pred cccccCCCCCCCcceEeccCc--ccccccccccccccccCCCceeeccCchhhc
Q 041071 297 KMLQNLPRLPASIHWISLNGC--VSLETLSDVLNLNEHQLPHLILNCVDCLKLA 348 (535)
Q Consensus 297 ~~L~~lp~lp~sL~~L~~~~C--~sL~~l~~~~n~~~~~~~~l~~~c~nC~kL~ 348 (535)
..+...+.+|.+|+.|.+..+ .+++...... ...+ .+.|. +|++++
T Consensus 167 ~~i~LP~~LP~SLk~L~ls~n~~~sLeI~~~sL---P~nl-~L~f~--n~lkL~ 214 (426)
T PRK15386 167 SNIILPEKLPESLQSITLHIEQKTTWNISFEGF---PDGL-DIDLQ--NSVLLS 214 (426)
T ss_pred CcccCcccccccCcEEEecccccccccCccccc---cccc-Eechh--hhcccC
Confidence 977544458999999998764 3333322111 1122 44455 888876
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.51 E-value=2.1e-07 Score=102.39 Aligned_cols=111 Identities=24% Similarity=0.334 Sum_probs=95.6
Q ss_pred cCcEEEeeccCCc-ccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecc
Q 041071 27 CLQELRVDGTDIK-ELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLD 105 (535)
Q Consensus 27 ~L~~L~L~~~~l~-~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~ 105 (535)
.++.|+|+++.+. .+|..++.+++|+.|+|++|.....+|..++.+++|+.|+|++|...+.+|..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999998887 788899999999999999988878899889999999999999998888999999999999999999
Q ss_pred cccCc-ccCccccCC-CCCCEeccccCcCCCccC
Q 041071 106 RTSIT-EVPSSIELL-TKLQWLNLNDCRSLVRLP 137 (535)
Q Consensus 106 ~~~i~-~lp~~i~~l-~~L~~L~L~~c~~l~~lp 137 (535)
+|.+. .+|..++.+ .++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99998 788877653 467788888876555443
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.50 E-value=2.1e-07 Score=102.45 Aligned_cols=108 Identities=25% Similarity=0.281 Sum_probs=95.2
Q ss_pred CCCEEeccCCCCCccCcccccCCCCCceeecccccCc-ccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeecc
Q 041071 74 CLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSIT-EVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLS 152 (535)
Q Consensus 74 ~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls 152 (535)
.++.|+|++|...+.+|..+..+++|+.|+|++|.+. .+|..++.+++|+.|+|++|...+.+|..+.++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3788999998888889999999999999999999998 788899999999999999999888999999999999999999
Q ss_pred CccCCCCchhhhhcc-ccccEEEecCcccc
Q 041071 153 GCFKLENVPETLRQI-ESLEKLDISGTAIR 181 (535)
Q Consensus 153 ~c~~l~~lp~~l~~l-~~L~~L~L~~~~i~ 181 (535)
+|.....+|..++.. .++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 998888999888764 46778888888644
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.27 E-value=1.1e-07 Score=99.97 Aligned_cols=242 Identities=24% Similarity=0.274 Sum_probs=116.7
Q ss_pred CCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeec
Q 041071 25 MECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFL 104 (535)
Q Consensus 25 ~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L 104 (535)
+..++.+.+..+.+.++-..+..+.+|..|++.++. +..+...+..+++|++|++++|.... + ..+..+..|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I~~-i-~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKITK-L-EGLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheecccccccc-c-cchhhccchhhhee
Confidence 444555555555555533334555666666665543 33333224445666666666543222 1 12334444666666
Q ss_pred ccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccccCCC
Q 041071 105 DRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPL 184 (535)
Q Consensus 105 ~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~ 184 (535)
.+|.|+.+. .+..++.|+.+++++|.....-+..+..+.+|+.+.+.+|..... +.+..+..+..+++..|.+..+-
T Consensus 148 ~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 148 SGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred ccCcchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceecc
Confidence 666666553 234466666666666554322220034566666666666633221 22333334444455555554221
Q ss_pred cccccCC--CCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCC
Q 041071 185 SSIFLMK--NLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDL 262 (535)
Q Consensus 185 ~~i~~l~--~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l 262 (535)
. +..+. .|+.++++++..... +..+..+..+..|++.++.+.. -..+...
T Consensus 225 ~-l~~~~~~~L~~l~l~~n~i~~~------------------------~~~~~~~~~l~~l~~~~n~~~~---~~~~~~~ 276 (414)
T KOG0531|consen 225 G-LNELVMLHLRELYLSGNRISRS------------------------PEGLENLKNLPVLDLSSNRISN---LEGLERL 276 (414)
T ss_pred C-cccchhHHHHHHhcccCccccc------------------------cccccccccccccchhhccccc---ccccccc
Confidence 1 11111 255555555543321 1224455566667776666532 1223344
Q ss_pred CCCCEEeCCCCcCCC----CChh-hcCCCCCcEEeccCCcccc
Q 041071 263 CSLEELHLSGNNFFT----LPAS-IYRLSSLLGIDLKECKMLQ 300 (535)
Q Consensus 263 ~~L~~L~Ls~n~l~~----lp~~-i~~l~~L~~L~L~~c~~L~ 300 (535)
..+..+....+.+.. .... ....+.++.+.+..+..-.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 277 PKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred chHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 555555666665441 1111 4455667777777666544
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=5.2e-07 Score=86.23 Aligned_cols=231 Identities=20% Similarity=0.198 Sum_probs=143.1
Q ss_pred CCCCCEEeccCCCCC--ccCcccccCCCCCceeecccccCc---ccCccccCCCCCCEeccccCcCCCccCccccCCCCC
Q 041071 72 LECLQTLVLSGCSKI--VKFPETVISVEDLSELFLDRTSIT---EVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSL 146 (535)
Q Consensus 72 l~~L~~L~Ls~c~~l--~~~p~~l~~l~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L 146 (535)
..-++.|.+.+|..- +.+...-.....++.|+|.+|.|+ ++-..+.++|.|+.|+++.|.....+...-....+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 344556666665432 122223345678889999999888 455667889999999998776543332211346688
Q ss_pred ceeeccCccCC-CCchhhhhccccccEEEecCccccCCC---cccccC-CCCcEEEcCCCCCCCCCCccccccccccccc
Q 041071 147 KTLNLSGCFKL-ENVPETLRQIESLEKLDISGTAIRQPL---SSIFLM-KNLKELSCRGCKGSPSSASWFLRFPINLMRW 221 (535)
Q Consensus 147 ~~L~Ls~c~~l-~~lp~~l~~l~~L~~L~L~~~~i~~~~---~~i~~l-~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l 221 (535)
++|.|.|...- ...-..+..++.++.|+++.|+..++- ..+... +.+++|.+.+|... ...
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~--------------~w~ 189 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ--------------LWL 189 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHH--------------HHH
Confidence 88888775322 333345666777777877777554321 111111 23333333333211 011
Q ss_pred cCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCCh--hhcCCCCCcEEeccCCccc
Q 041071 222 SSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPA--SIYRLSSLLGIDLKECKML 299 (535)
Q Consensus 222 ~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~--~i~~l~~L~~L~L~~c~~L 299 (535)
.-|.++ .-+|++..+.+..|.+.+..--.....++.+-.|+|+.|++.+..+ .+..++.|..|.+++++..
T Consensus 190 ~~~~l~-------r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 190 NKNKLS-------RIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred HHHhHH-------hhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 112222 2346888899999988765555667778888899999999986653 6788999999999999988
Q ss_pred ccCCCCCCCcceEeccCccccccccc
Q 041071 300 QNLPRLPASIHWISLNGCVSLETLSD 325 (535)
Q Consensus 300 ~~lp~lp~sL~~L~~~~C~sL~~l~~ 325 (535)
..+.. .--+.|-+...++++.|..
T Consensus 263 d~l~~--~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 263 DPLRG--GERRFLLIARLTKVQVLNG 286 (418)
T ss_pred ccccC--CcceEEEEeeccceEEecC
Confidence 77654 2223455556666666653
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=1.1e-06 Score=65.48 Aligned_cols=58 Identities=21% Similarity=0.329 Sum_probs=30.0
Q ss_pred CCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccch-hhhcCCCccEEeccCC
Q 041071 2 ESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPV-SIELMSGLVSLNLKDC 59 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~-~i~~l~~L~~L~Ls~~ 59 (535)
++|++|++++|......++.|..+++|++|++++|.+..++. .+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 345555555553322222455555555555555555555543 3455555555555554
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.21 E-value=1.4e-06 Score=64.93 Aligned_cols=59 Identities=25% Similarity=0.344 Sum_probs=44.3
Q ss_pred CcCcEEEeeccCCcccch-hhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCC
Q 041071 26 ECLQELRVDGTDIKELPV-SIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCS 84 (535)
Q Consensus 26 ~~L~~L~L~~~~l~~l~~-~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~ 84 (535)
++|++|++++|.+..+|. .+..+++|++|++++|.....-|..|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 467888888888888875 56778888888888776555555667778888888887764
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.16 E-value=2.6e-07 Score=97.04 Aligned_cols=216 Identities=29% Similarity=0.343 Sum_probs=101.2
Q ss_pred CCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEecc
Q 041071 48 MSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNL 127 (535)
Q Consensus 48 l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 127 (535)
+..++.++++.+...+ .-..+..+.+|+.|++.++ .+..+...+..+++|++|++++|.|+.+. .+..++.|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeecccc-chhhcccchhhhhcchheecccccccccc-chhhccchhhhee
Confidence 4445555555433222 1222455666666666653 33444433555666666666666666553 2444555666666
Q ss_pred ccCcCCCccCccccCCCCCceeeccCccCCCCchhh-hhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCC
Q 041071 128 NDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPET-LRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPS 206 (535)
Q Consensus 128 ~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~ 206 (535)
.+|.. ..+. .+..+++|+.+++++|... .+... ...+.+++.+.+.+|.+..+.. +..+..+..++
T Consensus 148 ~~N~i-~~~~-~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i~~-~~~~~~l~~~~--------- 214 (414)
T KOG0531|consen 148 SGNLI-SDIS-GLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIREIEG-LDLLKKLVLLS--------- 214 (414)
T ss_pred ccCcc-hhcc-CCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchhcccc-hHHHHHHHHhh---------
Confidence 65542 2222 2333555555555555322 22111 3444555555555554442210 11111111112
Q ss_pred CCccccccccccccccCCCcccccCCcccCCC--CCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChhhcC
Q 041071 207 SASWFLRFPINLMRWSSNPVALSFPSSLSGLC--SLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPASIYR 284 (535)
Q Consensus 207 ~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~--~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~ 284 (535)
+..|.+...-+ +..+. .|+.++++++.+.. .+..+..+..+..|++.+|.+..+. .+..
T Consensus 215 --------------l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~--~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~ 275 (414)
T KOG0531|consen 215 --------------LLDNKISKLEG--LNELVMLHLRELYLSGNRISR--SPEGLENLKNLPVLDLSSNRISNLE-GLER 275 (414)
T ss_pred --------------cccccceeccC--cccchhHHHHHHhcccCcccc--ccccccccccccccchhhccccccc-cccc
Confidence 22222221111 11222 26777777776643 3344555666777777777666544 3444
Q ss_pred CCCCcEEeccCCcc
Q 041071 285 LSSLLGIDLKECKM 298 (535)
Q Consensus 285 l~~L~~L~L~~c~~ 298 (535)
.+.+..+....++.
T Consensus 276 ~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 276 LPKLSELWLNDNKL 289 (414)
T ss_pred cchHHHhccCcchh
Confidence 45555555555544
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.15 E-value=1.1e-08 Score=107.89 Aligned_cols=131 Identities=29% Similarity=0.297 Sum_probs=78.4
Q ss_pred CCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCC
Q 041071 121 KLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRG 200 (535)
Q Consensus 121 ~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~ 200 (535)
+|...+.+.| .+..+..++.-++.|+.|+|+.|. +... +.+..++.|++|||+.|.++.+|..-..-..|..|.+++
T Consensus 165 ~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk-~~~v-~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYN-RLVLMDESLQLLPALESLNLSHNK-FTKV-DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhh-hhhh-HHHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence 3444444433 345555566666777777777763 3333 266677777777777777776653222222266666666
Q ss_pred CCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCC
Q 041071 201 CKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLP 279 (535)
Q Consensus 201 ~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp 279 (535)
|...+. ..+.++.+|+.||+++|-+.+-.-...++.+..|+.|+|.||.+-.-|
T Consensus 242 N~l~tL-------------------------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 242 NALTTL-------------------------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cHHHhh-------------------------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 553321 125667778888888887654333445566777888888888665433
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=2.5e-06 Score=81.64 Aligned_cols=101 Identities=22% Similarity=0.237 Sum_probs=55.7
Q ss_pred EEEeeccCCcccchh--h-hcCCCccEEeccCCCCCC--ccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeec
Q 041071 30 ELRVDGTDIKELPVS--I-ELMSGLVSLNLKDCRNLT--TLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFL 104 (535)
Q Consensus 30 ~L~L~~~~l~~l~~~--i-~~l~~L~~L~Ls~~~~l~--~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L 104 (535)
.|.+.++.|...... + .....++.+||.+|.... .+-..+.+++.|++|+|+.|.....+...-..+.+|+.|-|
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL 128 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence 445555555433221 2 234566777777654322 22222445677777777665433222221134557777777
Q ss_pred ccccCc--ccCccccCCCCCCEeccccC
Q 041071 105 DRTSIT--EVPSSIELLTKLQWLNLNDC 130 (535)
Q Consensus 105 ~~~~i~--~lp~~i~~l~~L~~L~L~~c 130 (535)
.|+.+. ...+.+..+|++++|.++.|
T Consensus 129 NgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 129 NGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred cCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 777654 55566777777777777765
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.81 E-value=6.2e-07 Score=94.92 Aligned_cols=113 Identities=25% Similarity=0.339 Sum_probs=61.9
Q ss_pred CCccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCcc-ccCCCCCceeeccCccCCCCchhh
Q 041071 85 KIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSS-INGLTSLKTLNLSGCFKLENVPET 163 (535)
Q Consensus 85 ~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~Ls~c~~l~~lp~~ 163 (535)
.+..+.+.+.-++.|+.|+|+.|+++.+. .+..+++|++|||++|. +..+|.. ...+. |+.|++.+|. ++.+ ..
T Consensus 175 ~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~-l~tL-~g 249 (1096)
T KOG1859|consen 175 RLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNA-LTTL-RG 249 (1096)
T ss_pred hHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecccH-HHhh-hh
Confidence 34444455555666666666666666655 56666666666666654 3334431 12233 6666666652 3332 33
Q ss_pred hhccccccEEEecCccccCCC--cccccCCCCcEEEcCCCC
Q 041071 164 LRQIESLEKLDISGTAIRQPL--SSIFLMKNLKELSCRGCK 202 (535)
Q Consensus 164 l~~l~~L~~L~L~~~~i~~~~--~~i~~l~~L~~L~L~~~~ 202 (535)
+.++++|+.||+++|-+.+.. ..+..+..|+.|+|.||.
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 556666666666666555322 233445556666666654
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.72 E-value=2.5e-05 Score=53.80 Aligned_cols=34 Identities=35% Similarity=0.517 Sum_probs=22.7
Q ss_pred CCCEEeCCCCcCCCCChhhcCCCCCcEEeccCCc
Q 041071 264 SLEELHLSGNNFFTLPASIYRLSSLLGIDLKECK 297 (535)
Q Consensus 264 ~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 297 (535)
+|++|++++|++..+|..+.+|++|+.|++++|+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 5677777777777777667777777777777774
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.61 E-value=3.4e-05 Score=53.13 Aligned_cols=40 Identities=30% Similarity=0.537 Sum_probs=34.1
Q ss_pred CCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCC
Q 041071 238 CSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLP 279 (535)
Q Consensus 238 ~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp 279 (535)
++|++|++++|++.+ +|..+..+++|+.|++++|.+..++
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCCCc
Confidence 479999999999975 8877999999999999999999776
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.60 E-value=3e-06 Score=80.11 Aligned_cols=243 Identities=21% Similarity=0.214 Sum_probs=123.2
Q ss_pred CCCcCcEEEeeccCCc-----ccchhhhcCCCccEEeccCCCCCC----ccC-------cccCCCCCCCEEeccCCCCCc
Q 041071 24 GMECLQELRVDGTDIK-----ELPVSIELMSGLVSLNLKDCRNLT----TLP-------ITIGNLECLQTLVLSGCSKIV 87 (535)
Q Consensus 24 ~~~~L~~L~L~~~~l~-----~l~~~i~~l~~L~~L~Ls~~~~l~----~lp-------~~l~~l~~L~~L~Ls~c~~l~ 87 (535)
.+..+.+++|+||.|. .+...|.+-.+|+..+++. .++. .++ ..+-+|+.|+..+||.|..-.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 4778888888888876 3444566777888888875 2222 122 224467788888888776555
Q ss_pred cCccc----ccCCCCCceeecccccCcccCc-cccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchh
Q 041071 88 KFPET----VISVEDLSELFLDRTSITEVPS-SIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPE 162 (535)
Q Consensus 88 ~~p~~----l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~ 162 (535)
.+|+. +..-..|++|.+++|.+..+.- .|+. .|.+ |..|+. ..+-+.|++.+...| .+...+.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~--la~nKK-------aa~kp~Le~vicgrN-Rlengs~ 174 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFH--LAYNKK-------AADKPKLEVVICGRN-RLENGSK 174 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHH--HHHHhh-------hccCCCceEEEeccc-hhccCcH
Confidence 55433 3445566666666665542211 0110 0000 111111 122345666655555 3333332
Q ss_pred -----hhhccccccEEEecCccccC--C----CcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccC
Q 041071 163 -----TLRQIESLEKLDISGTAIRQ--P----LSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFP 231 (535)
Q Consensus 163 -----~l~~l~~L~~L~L~~~~i~~--~----~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp 231 (535)
.+..-.+|+++.+..|.|.. + .-.+.++.+|+.|++..|......+ ..+.
T Consensus 175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS-------------------~~La 235 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS-------------------RYLA 235 (388)
T ss_pred HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH-------------------HHHH
Confidence 12233466677777776651 1 1223455666666666655332110 0122
Q ss_pred CcccCCCCCCEEecCCCCCCCCCCCCCC-----CCCCCCCEEeCCCCcCC-------CCChhhc-CCCCCcEEeccCCcc
Q 041071 232 SSLSGLCSLTKLDISDCDLGEGAIPSSI-----GDLCSLEELHLSGNNFF-------TLPASIY-RLSSLLGIDLKECKM 298 (535)
Q Consensus 232 ~~l~~l~~L~~L~Ls~~~l~~~~lp~~l-----~~l~~L~~L~Ls~n~l~-------~lp~~i~-~l~~L~~L~L~~c~~ 298 (535)
..+..++.|++|.+.+|-++.......+ ...++|..|-..+|... ++|.... .+|-|..|.+.+|+.
T Consensus 236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 2345556677777777766442211111 12456666666666432 2333332 355666666666553
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.59 E-value=3.8e-05 Score=84.84 Aligned_cols=156 Identities=28% Similarity=0.278 Sum_probs=100.3
Q ss_pred CCCCCEeccccCcCCC-ccCcccc-CCCCCceeeccCccCC-CCchhhhhccccccEEEecCccccCCCcccccCCCCcE
Q 041071 119 LTKLQWLNLNDCRSLV-RLPSSIN-GLTSLKTLNLSGCFKL-ENVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKE 195 (535)
Q Consensus 119 l~~L~~L~L~~c~~l~-~lp~~i~-~l~~L~~L~Ls~c~~l-~~lp~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~ 195 (535)
-.+|++|++++..... ..|..++ .+|+|+.|.++|=... +.+...+.++++|..||++++++..+ ..+.++++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 4578888887744332 1122232 4888999988874332 34556677889999999999988877 77888888888
Q ss_pred EEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCC-CC----CCCCCCCCCCEEeC
Q 041071 196 LSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGA-IP----SSIGDLCSLEELHL 270 (535)
Q Consensus 196 L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~-lp----~~l~~l~~L~~L~L 270 (535)
|.+.+-...... .+- .+..+++|+.||+|.-....+. +. +.-..+|.|+.||.
T Consensus 200 L~mrnLe~e~~~---------------------~l~-~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDc 257 (699)
T KOG3665|consen 200 LSMRNLEFESYQ---------------------DLI-DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDC 257 (699)
T ss_pred HhccCCCCCchh---------------------hHH-HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEec
Confidence 887765543211 011 2567888999999887654322 11 11234789999999
Q ss_pred CCCcCC--CCChhhcCCCCCcEEeccCCc
Q 041071 271 SGNNFF--TLPASIYRLSSLLGIDLKECK 297 (535)
Q Consensus 271 s~n~l~--~lp~~i~~l~~L~~L~L~~c~ 297 (535)
|++.+. .+-..+..-++|+.+.+-+|.
T Consensus 258 SgTdi~~~~le~ll~sH~~L~~i~~~~~~ 286 (699)
T KOG3665|consen 258 SGTDINEEILEELLNSHPNLQQIAALDCL 286 (699)
T ss_pred CCcchhHHHHHHHHHhCccHhhhhhhhhh
Confidence 998776 233334455666666655543
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.45 E-value=6.8e-05 Score=82.83 Aligned_cols=125 Identities=19% Similarity=0.318 Sum_probs=72.5
Q ss_pred CCcEEecCCCcCCC-CCC-cccCCCCcCcEEEeeccCCc--ccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEE
Q 041071 3 SLKTLVLSGCSKLK-KFP-DIVGGMECLQELRVDGTDIK--ELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTL 78 (535)
Q Consensus 3 ~L~~L~Ls~~~~l~-~lp-~~~~~~~~L~~L~L~~~~l~--~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L 78 (535)
+|++||++|..... ..| .....+|.|+.|.+.|-.+. +...-..++++|+.||++++. +..+ ..++++++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHHH
Confidence 67888888765442 233 33345788888888875543 333445677888888888744 4444 447778888887
Q ss_pred eccCCCCCccCc--ccccCCCCCceeecccccCcccCc-------cccCCCCCCEeccccC
Q 041071 79 VLSGCSKIVKFP--ETVISVEDLSELFLDRTSITEVPS-------SIELLTKLQWLNLNDC 130 (535)
Q Consensus 79 ~Ls~c~~l~~~p--~~l~~l~~L~~L~L~~~~i~~lp~-------~i~~l~~L~~L~L~~c 130 (535)
.+.+ -.+.... ..+.++++|+.||+|.......+. .-..||+|+.||.++.
T Consensus 201 ~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 201 SMRN-LEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred hccC-CCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 7765 2222211 235567777777776654432221 1123555555555543
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.35 E-value=1.9e-05 Score=67.39 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=50.0
Q ss_pred CCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChhhcCCCCCcEEeccCCccc
Q 041071 237 LCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLKECKML 299 (535)
Q Consensus 237 l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L 299 (535)
++.++.|++++|.+.+ +|..+..++.|+.|+++.|.+...|..+..+.+|-.|+..++.+.
T Consensus 76 f~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 76 FPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccc
Confidence 4567888888888876 888888888899999999988888888888888888888877653
No 59
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.34 E-value=2.7e-05 Score=83.18 Aligned_cols=212 Identities=26% Similarity=0.322 Sum_probs=106.4
Q ss_pred CCCCCEEeccCCCCCcc--CcccccCCCCCceeecccc--cCcc----cCccccCCCCCCEeccccCcCCCccC-ccc-c
Q 041071 72 LECLQTLVLSGCSKIVK--FPETVISVEDLSELFLDRT--SITE----VPSSIELLTKLQWLNLNDCRSLVRLP-SSI-N 141 (535)
Q Consensus 72 l~~L~~L~Ls~c~~l~~--~p~~l~~l~~L~~L~L~~~--~i~~----lp~~i~~l~~L~~L~L~~c~~l~~lp-~~i-~ 141 (535)
++.|+.|.+.+|..+.. +-.....+++|+.|+++++ .+.. .......+++|+.|++..|......- ..+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56667777766666655 3345556667777776652 1111 11234456777777777776432211 111 2
Q ss_pred CCCCCceeeccCccCC--CCchhhhhccccccEEEecCcccc---CCCcccccCCCCcEEEcCCCCCCCCCCcccccccc
Q 041071 142 GLTSLKTLNLSGCFKL--ENVPETLRQIESLEKLDISGTAIR---QPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPI 216 (535)
Q Consensus 142 ~l~~L~~L~Ls~c~~l--~~lp~~l~~l~~L~~L~L~~~~i~---~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l 216 (535)
.+++|++|.+.+|..+ ..+-.....+++|++|+++++... .+......+++|+.|.+..+..- ..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c---------~~l 337 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGC---------PSL 337 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCC---------ccH
Confidence 3677788777777643 223344555677888888776543 12223344565555554443320 001
Q ss_pred ccccccCCCcc---cccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChhhcCCCCCcEEec
Q 041071 217 NLMRWSSNPVA---LSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDL 293 (535)
Q Consensus 217 ~~l~l~~n~~~---~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L 293 (535)
+.+.+...... ........+++.|+.+.|..|...+...-..+..++.|. ..+.........|+.|++
T Consensus 338 ~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~---------~~l~~~~~~~~~l~~L~l 408 (482)
T KOG1947|consen 338 TDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT---------ESLELRLCRSDSLRVLNL 408 (482)
T ss_pred HHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc---------hHHHHHhccCCccceEec
Confidence 11111111100 111223566778888888888744322222233333331 111112223333888888
Q ss_pred cCCccccc
Q 041071 294 KECKMLQN 301 (535)
Q Consensus 294 ~~c~~L~~ 301 (535)
..|...+.
T Consensus 409 ~~~~~~t~ 416 (482)
T KOG1947|consen 409 SDCRLVTD 416 (482)
T ss_pred ccCccccc
Confidence 88887554
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.33 E-value=2e-05 Score=84.16 Aligned_cols=169 Identities=25% Similarity=0.321 Sum_probs=89.4
Q ss_pred CCCcCcEEEeecc-CCcc--cchhhhcCCCccEEeccCC-CCCCccC----cccCCCCCCCEEeccCCCCCccC--cccc
Q 041071 24 GMECLQELRVDGT-DIKE--LPVSIELMSGLVSLNLKDC-RNLTTLP----ITIGNLECLQTLVLSGCSKIVKF--PETV 93 (535)
Q Consensus 24 ~~~~L~~L~L~~~-~l~~--l~~~i~~l~~L~~L~Ls~~-~~l~~lp----~~l~~l~~L~~L~Ls~c~~l~~~--p~~l 93 (535)
.+++|+.|.+.++ .+.. +-.....+++|+.|++++| ......+ .....+++|+.|++++|..+... ....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 4677777777763 3443 3344566777777777762 2222111 12334677777777777643321 1222
Q ss_pred cCCCCCceeeccccc-Cc--ccCccccCCCCCCEeccccCcCCCc--cCccccCCCCCceeeccCccCCCCchhhhhccc
Q 041071 94 ISVEDLSELFLDRTS-IT--EVPSSIELLTKLQWLNLNDCRSLVR--LPSSINGLTSLKTLNLSGCFKLENVPETLRQIE 168 (535)
Q Consensus 94 ~~l~~L~~L~L~~~~-i~--~lp~~i~~l~~L~~L~L~~c~~l~~--lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~ 168 (535)
..+++|+.|.+.++. ++ .+-.....++.|++|++++|..+.. +.....++++|+.|.+..+.. +.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~ 335 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CP 335 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Cc
Confidence 236777777766655 44 3444456677888888888876532 222233456666655444322 22
Q ss_pred cccEEEecCccc----cCCCcccccCCCCcEEEcCCCC
Q 041071 169 SLEKLDISGTAI----RQPLSSIFLMKNLKELSCRGCK 202 (535)
Q Consensus 169 ~L~~L~L~~~~i----~~~~~~i~~l~~L~~L~L~~~~ 202 (535)
.++.+.+.+... ......+.++++++.+.+..|.
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 333333332221 1111234456666666666665
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.20 E-value=3.3e-05 Score=66.03 Aligned_cols=110 Identities=20% Similarity=0.278 Sum_probs=62.5
Q ss_pred CCCEEeccCCCCC--ccCcccccCCCCCceeecccccCcccCccccC-CCCCCEeccccCcCCCccCccccCCCCCceee
Q 041071 74 CLQTLVLSGCSKI--VKFPETVISVEDLSELFLDRTSITEVPSSIEL-LTKLQWLNLNDCRSLVRLPSSINGLTSLKTLN 150 (535)
Q Consensus 74 ~L~~L~Ls~c~~l--~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~-l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 150 (535)
.+..++|+.|... ...+..+.....|+..+|++|.++.+|..+.. .+.++.|++.+|. +..+|..+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcc
Confidence 4556777777532 11222333445566667777777777765533 3466666666644 455565566666666666
Q ss_pred ccCccCCCCchhhhhccccccEEEecCccccCCCc
Q 041071 151 LSGCFKLENVPETLRQIESLEKLDISGTAIRQPLS 185 (535)
Q Consensus 151 Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~ 185 (535)
++.|+ +...|+.+..+.+|..|+..+|++..++.
T Consensus 107 l~~N~-l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 107 LRFNP-LNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred cccCc-cccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 66653 44445555556666666666666555443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.12 E-value=0.00077 Score=61.57 Aligned_cols=124 Identities=23% Similarity=0.276 Sum_probs=77.5
Q ss_pred CcEEEeeccCCcccchhhh-cCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeeccc
Q 041071 28 LQELRVDGTDIKELPVSIE-LMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDR 106 (535)
Q Consensus 28 L~~L~L~~~~l~~l~~~i~-~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~ 106 (535)
=++++|.+..+..+.. ++ -+.....+||++|. +..++. |..++.|.+|.|..|.....-|.....+++|..|.|.+
T Consensus 21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccccchhh-ccccccccceecccccc-hhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 3555565544443322 22 24467778888754 444444 66678888888887766665666566677888888888
Q ss_pred ccCcccCc--cccCCCCCCEeccccCcCCCcc---CccccCCCCCceeeccCc
Q 041071 107 TSITEVPS--SIELLTKLQWLNLNDCRSLVRL---PSSINGLTSLKTLNLSGC 154 (535)
Q Consensus 107 ~~i~~lp~--~i~~l~~L~~L~L~~c~~l~~l---p~~i~~l~~L~~L~Ls~c 154 (535)
|.|.++.. .+..+++|++|.+-+|.....- -..++.+++|++||..+-
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 88876543 3566778888877766533211 123566777777777653
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.07 E-value=0.00012 Score=69.62 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=33.7
Q ss_pred CCCCEEecCCCCCCCCCCC----CCCCCCCCCCEEeCCCCcCCCC-----ChhhcCCCCCcEEeccCCcc
Q 041071 238 CSLTKLDISDCDLGEGAIP----SSIGDLCSLEELHLSGNNFFTL-----PASIYRLSSLLGIDLKECKM 298 (535)
Q Consensus 238 ~~L~~L~Ls~~~l~~~~lp----~~l~~l~~L~~L~Ls~n~l~~l-----p~~i~~l~~L~~L~L~~c~~ 298 (535)
..|+++.+..|.+....+. ..+..+.+|+.|||..|-|+.. ...+...+.|+.|.+.+|-.
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 4667777777766322111 1233456777777777776622 22334445567777766643
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.48 E-value=0.004 Score=57.01 Aligned_cols=62 Identities=21% Similarity=0.186 Sum_probs=29.7
Q ss_pred ccCCCCCCEEecCCCCCCCCCCCCCCC-CCCCCCEEeCCCCcCCCCCh--hhcCCCCCcEEeccCCc
Q 041071 234 LSGLCSLTKLDISDCDLGEGAIPSSIG-DLCSLEELHLSGNNFFTLPA--SIYRLSSLLGIDLKECK 297 (535)
Q Consensus 234 l~~l~~L~~L~Ls~~~l~~~~lp~~l~-~l~~L~~L~Ls~n~l~~lp~--~i~~l~~L~~L~L~~c~ 297 (535)
|.+++.|.+|.|.+|.++. +...+. .+++|..|.|.+|.+..+-+ -+..||+|++|.+-+|+
T Consensus 60 lp~l~rL~tLll~nNrIt~--I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITR--IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred CCCccccceEEecCCccee--eccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 4444555555555555543 222222 24455555555555553332 23445555555555554
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.28 E-value=0.0016 Score=61.88 Aligned_cols=83 Identities=22% Similarity=0.203 Sum_probs=44.8
Q ss_pred cCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCC--CCCccCcccccCCCCCceeecccccCcccC--ccccCCCCC
Q 041071 47 LMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGC--SKIVKFPETVISVEDLSELFLDRTSITEVP--SSIELLTKL 122 (535)
Q Consensus 47 ~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c--~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp--~~i~~l~~L 122 (535)
.+..|+.|++.++..++ +-. +-.+++|+.|.++.| .....++.....+++|++|++++|+|..+. ..+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt-~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT-LTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceee-ccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 44555555555543222 211 334777777777776 444445555555677777777777666421 123344445
Q ss_pred CEeccccCc
Q 041071 123 QWLNLNDCR 131 (535)
Q Consensus 123 ~~L~L~~c~ 131 (535)
..|++.+|.
T Consensus 119 ~~Ldl~n~~ 127 (260)
T KOG2739|consen 119 KSLDLFNCS 127 (260)
T ss_pred hhhhcccCC
Confidence 555555554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.88 E-value=0.0045 Score=58.88 Aligned_cols=110 Identities=25% Similarity=0.255 Sum_probs=72.6
Q ss_pred CCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCC--CCCCccCcccCCCCCCCEEeccCCCCCccCccc---
Q 041071 18 FPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDC--RNLTTLPITIGNLECLQTLVLSGCSKIVKFPET--- 92 (535)
Q Consensus 18 lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~--~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~--- 92 (535)
+.........|+.|++.+..+..+. .+-.|++|+.|.++.| +....++-...++++|++|++++|.+- . ++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccch
Confidence 4455556777888888776666553 2446889999999988 444455555567899999999997543 2 222
Q ss_pred ccCCCCCceeecccccCcccCc----cccCCCCCCEeccccC
Q 041071 93 VISVEDLSELFLDRTSITEVPS----SIELLTKLQWLNLNDC 130 (535)
Q Consensus 93 l~~l~~L~~L~L~~~~i~~lp~----~i~~l~~L~~L~L~~c 130 (535)
+..+.+|..|++.++..+.+-. .+.-+++|++|+-...
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 4456778888888876664321 2445666666655443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=0.00082 Score=64.23 Aligned_cols=58 Identities=29% Similarity=0.326 Sum_probs=35.7
Q ss_pred CCCCceeeccCccCCCCchhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCC
Q 041071 143 LTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKG 203 (535)
Q Consensus 143 l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~ 203 (535)
+.+.+.|+..||. +..+ ..+..|+.|+.|.|+-|.|+.+ ..+..|++|+.|+|..|..
T Consensus 18 l~~vkKLNcwg~~-L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I 75 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCI 75 (388)
T ss_pred HHHhhhhcccCCC-ccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhccc
Confidence 4456677777773 3333 3456677778887777777654 3355566666666665543
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.89 E-value=0.0086 Score=34.38 Aligned_cols=19 Identities=53% Similarity=0.768 Sum_probs=10.9
Q ss_pred CCEEeCCCCcCCCCChhhc
Q 041071 265 LEELHLSGNNFFTLPASIY 283 (535)
Q Consensus 265 L~~L~Ls~n~l~~lp~~i~ 283 (535)
|++|+|++|+++.+|..++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5566666666666655443
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.76 E-value=0.12 Score=44.14 Aligned_cols=60 Identities=17% Similarity=0.276 Sum_probs=29.0
Q ss_pred cccCCCCcCcEEEeeccCCcccch-hhhcCCCccEEeccCCCCCCccC-cccCCCCCCCEEeccC
Q 041071 20 DIVGGMECLQELRVDGTDIKELPV-SIELMSGLVSLNLKDCRNLTTLP-ITIGNLECLQTLVLSG 82 (535)
Q Consensus 20 ~~~~~~~~L~~L~L~~~~l~~l~~-~i~~l~~L~~L~Ls~~~~l~~lp-~~l~~l~~L~~L~Ls~ 82 (535)
..|.++.+|+.+.+.. .+..++. .+..+.+|+.+.+... +..++ ..|..+.+|+.+.+..
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc
Confidence 3455677777777764 4556654 3556667777777652 44433 2355566677777753
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.72 E-value=0.0018 Score=62.06 Aligned_cols=78 Identities=27% Similarity=0.331 Sum_probs=45.9
Q ss_pred CCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCc--ccCCCCCCCEEec
Q 041071 3 SLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPI--TIGNLECLQTLVL 80 (535)
Q Consensus 3 ~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~--~l~~l~~L~~L~L 80 (535)
+.+.||+-||. +.++. +..+|+.|++|.|+-|.|..+. .+..+++|+.|.|+.|.. ..+-. .+.++++|+.|-|
T Consensus 20 ~vkKLNcwg~~-L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I-~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCG-LDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCI-ESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCC-ccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhccc-ccHHHHHHHhcCchhhhHhh
Confidence 45667777764 33332 3346777777777777777764 356777777777776542 22211 1345566666666
Q ss_pred cCCC
Q 041071 81 SGCS 84 (535)
Q Consensus 81 s~c~ 84 (535)
..|.
T Consensus 96 ~ENP 99 (388)
T KOG2123|consen 96 DENP 99 (388)
T ss_pred ccCC
Confidence 5544
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.18 E-value=0.021 Score=32.70 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=10.6
Q ss_pred CceeecccccCcccCcccc
Q 041071 99 LSELFLDRTSITEVPSSIE 117 (535)
Q Consensus 99 L~~L~L~~~~i~~lp~~i~ 117 (535)
|++|++++|.++.+|++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555555544
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.84 E-value=0.035 Score=29.65 Aligned_cols=16 Identities=44% Similarity=0.692 Sum_probs=5.7
Q ss_pred CCCEEeCCCCcCCCCC
Q 041071 264 SLEELHLSGNNFFTLP 279 (535)
Q Consensus 264 ~L~~L~Ls~n~l~~lp 279 (535)
+|+.|+|++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3444455544444443
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.41 E-value=0.24 Score=42.22 Aligned_cols=76 Identities=13% Similarity=0.279 Sum_probs=46.4
Q ss_pred CCCcEEecCCCcCCCCCC-cccCCCCcCcEEEeeccCCcccch-hhhcCCCccEEeccCCCCCCccC-cccCCCCCCCEE
Q 041071 2 ESLKTLVLSGCSKLKKFP-DIVGGMECLQELRVDGTDIKELPV-SIELMSGLVSLNLKDCRNLTTLP-ITIGNLECLQTL 78 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp-~~~~~~~~L~~L~L~~~~l~~l~~-~i~~l~~L~~L~Ls~~~~l~~lp-~~l~~l~~L~~L 78 (535)
++|+.+.+... +..++ ..|..+++|+.+.+.++ +..++. .+.++.+|+.+.+.+ ....++ ..|..+++|+.+
T Consensus 12 ~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 12 SNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEE
T ss_pred CCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--ccccccccccccccccccc
Confidence 46888888752 44444 66778889999999874 777765 467787899999975 334343 346668999999
Q ss_pred eccC
Q 041071 79 VLSG 82 (535)
Q Consensus 79 ~Ls~ 82 (535)
.+..
T Consensus 87 ~~~~ 90 (129)
T PF13306_consen 87 DIPS 90 (129)
T ss_dssp EETT
T ss_pred ccCc
Confidence 9865
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.33 E-value=0.12 Score=27.58 Aligned_cols=11 Identities=18% Similarity=0.449 Sum_probs=3.0
Q ss_pred CcEEEeeccCC
Q 041071 28 LQELRVDGTDI 38 (535)
Q Consensus 28 L~~L~L~~~~l 38 (535)
|+.|++++|.+
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33333333333
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.03 E-value=0.4 Score=28.46 Aligned_cols=21 Identities=43% Similarity=0.596 Sum_probs=15.7
Q ss_pred CCCCCEEeCCCCcCCCCChhh
Q 041071 262 LCSLEELHLSGNNFFTLPASI 282 (535)
Q Consensus 262 l~~L~~L~Ls~n~l~~lp~~i 282 (535)
+++|+.|+|++|.+..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 357788888888888887654
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.03 E-value=0.4 Score=28.46 Aligned_cols=21 Identities=43% Similarity=0.596 Sum_probs=15.7
Q ss_pred CCCCCEEeCCCCcCCCCChhh
Q 041071 262 LCSLEELHLSGNNFFTLPASI 282 (535)
Q Consensus 262 l~~L~~L~Ls~n~l~~lp~~i 282 (535)
+++|+.|+|++|.+..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 357788888888888887654
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=87.04 E-value=0.0035 Score=66.51 Aligned_cols=181 Identities=23% Similarity=0.266 Sum_probs=87.7
Q ss_pred CceeecccccCc-----ccCccccCCCCCCEeccccCcCCCc----cCccccCC-CCCceeeccCccCCC----Cchhhh
Q 041071 99 LSELFLDRTSIT-----EVPSSIELLTKLQWLNLNDCRSLVR----LPSSINGL-TSLKTLNLSGCFKLE----NVPETL 164 (535)
Q Consensus 99 L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~c~~l~~----lp~~i~~l-~~L~~L~Ls~c~~l~----~lp~~l 164 (535)
+..|.|.+|.+. .+-..+...+.|+.|++++|..... +-..+... ..|++|++..|.... .+.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 444444444443 2223445555666666666544311 00111111 445556666664432 234455
Q ss_pred hccccccEEEecCccccC-----CCccc----ccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCccc
Q 041071 165 RQIESLEKLDISGTAIRQ-----PLSSI----FLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLS 235 (535)
Q Consensus 165 ~~l~~L~~L~L~~~~i~~-----~~~~i----~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~ 235 (535)
.....++.++++.|.+.. ++..+ ....++++|.+.+|........ .+...+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~-------------------~l~~~l~ 229 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA-------------------LLDEVLA 229 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH-------------------HHHHHHh
Confidence 556667777777766641 11222 2355666666666654422100 0111123
Q ss_pred CCCC-CCEEecCCCCCCCC---CCCCCCCCC-CCCCEEeCCCCcCC-----CCChhhcCCCCCcEEeccCCcc
Q 041071 236 GLCS-LTKLDISDCDLGEG---AIPSSIGDL-CSLEELHLSGNNFF-----TLPASIYRLSSLLGIDLKECKM 298 (535)
Q Consensus 236 ~l~~-L~~L~Ls~~~l~~~---~lp~~l~~l-~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~~ 298 (535)
..++ +..|++..|.+.+. .+...+..+ ..++.++++.|.+. .+...+..++.++.|.++++..
T Consensus 230 ~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 230 SGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred ccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 3333 55566666665432 111222233 45567777777665 3445556666777777777664
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=85.66 E-value=0.0089 Score=63.47 Aligned_cols=129 Identities=26% Similarity=0.293 Sum_probs=56.2
Q ss_pred CCEEeccCCCCCcc----CcccccCCCCCceeecccccCc-----ccCcc----ccCCCCCCEeccccCcCCCc----cC
Q 041071 75 LQTLVLSGCSKIVK----FPETVISVEDLSELFLDRTSIT-----EVPSS----IELLTKLQWLNLNDCRSLVR----LP 137 (535)
Q Consensus 75 L~~L~Ls~c~~l~~----~p~~l~~l~~L~~L~L~~~~i~-----~lp~~----i~~l~~L~~L~L~~c~~l~~----lp 137 (535)
|++|.+..|..... +...+.....++.++++.|.+. .++.. +....++++|++++|..... +.
T Consensus 146 l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~ 225 (478)
T KOG4308|consen 146 LQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLD 225 (478)
T ss_pred HHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHH
Confidence 44444444443322 3333444555555555555543 11122 22355566666665543311 11
Q ss_pred ccccCCCC-CceeeccCccCCCC----chhhhhcc-ccccEEEecCcccc-----CCCcccccCCCCcEEEcCCCCC
Q 041071 138 SSINGLTS-LKTLNLSGCFKLEN----VPETLRQI-ESLEKLDISGTAIR-----QPLSSIFLMKNLKELSCRGCKG 203 (535)
Q Consensus 138 ~~i~~l~~-L~~L~Ls~c~~l~~----lp~~l~~l-~~L~~L~L~~~~i~-----~~~~~i~~l~~L~~L~L~~~~~ 203 (535)
..+...++ +..|++..|..... +...+..+ ..++++++..|.+. .+...+..++.++.|.+..+..
T Consensus 226 ~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 226 EVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 11222333 44455555533221 12223333 44556666666555 2233444455566666655554
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.71 E-value=0.094 Score=48.27 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=21.1
Q ss_pred cccEEEecCcccc-CCCcccccCCCCcEEEcCCCCCCC
Q 041071 169 SLEKLDISGTAIR-QPLSSIFLMKNLKELSCRGCKGSP 205 (535)
Q Consensus 169 ~L~~L~L~~~~i~-~~~~~i~~l~~L~~L~L~~~~~~~ 205 (535)
.++.++.+++.|. +-...+..++.++.|.+.+|....
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d 139 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD 139 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchh
Confidence 4566666666665 223344556666666666666443
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.34 E-value=0.27 Score=45.34 Aligned_cols=79 Identities=20% Similarity=0.319 Sum_probs=48.1
Q ss_pred CceeecccccCcc-cCccccCCCCCCEeccccCcCCCccC-ccc-cCCCCCceeeccCccCCCCch-hhhhccccccEEE
Q 041071 99 LSELFLDRTSITE-VPSSIELLTKLQWLNLNDCRSLVRLP-SSI-NGLTSLKTLNLSGCFKLENVP-ETLRQIESLEKLD 174 (535)
Q Consensus 99 L~~L~L~~~~i~~-lp~~i~~l~~L~~L~L~~c~~l~~lp-~~i-~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~ 174 (535)
++.++-+++.|.. --..+..++.++.|.+.+|+...... +.+ +-.++|+.|+|++|..+++.. ..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 3444444444442 12345667778888888887665321 111 136788899999988776543 4566677777776
Q ss_pred ecC
Q 041071 175 ISG 177 (535)
Q Consensus 175 L~~ 177 (535)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 654
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.62 E-value=0.96 Score=26.77 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=12.1
Q ss_pred CcCcEEEeeccCCcccchh
Q 041071 26 ECLQELRVDGTDIKELPVS 44 (535)
Q Consensus 26 ~~L~~L~L~~~~l~~l~~~ 44 (535)
++|+.|+|.+|.|..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.62 E-value=0.96 Score=26.77 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=12.1
Q ss_pred CcCcEEEeeccCCcccchh
Q 041071 26 ECLQELRVDGTDIKELPVS 44 (535)
Q Consensus 26 ~~L~~L~L~~~~l~~l~~~ 44 (535)
++|+.|+|.+|.|..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.14 E-value=0.046 Score=51.26 Aligned_cols=85 Identities=12% Similarity=0.123 Sum_probs=52.1
Q ss_pred CCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceee
Q 041071 24 GMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELF 103 (535)
Q Consensus 24 ~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~ 103 (535)
.....+.||++.+++..+...+.-+..|..|+++.+ .+..+|..++.+..+..+++.. +..+..|.+.+..+++++++
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchhh
Confidence 455566666666666666555666666666666653 3455565565566666666554 34556666666677777776
Q ss_pred cccccCc
Q 041071 104 LDRTSIT 110 (535)
Q Consensus 104 L~~~~i~ 110 (535)
+.+|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 6666544
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.77 E-value=1.4 Score=26.37 Aligned_cols=18 Identities=44% Similarity=0.646 Sum_probs=12.7
Q ss_pred CCCCEEeCCCCcCCCCCh
Q 041071 263 CSLEELHLSGNNFFTLPA 280 (535)
Q Consensus 263 ~~L~~L~Ls~n~l~~lp~ 280 (535)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777777774
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=77.51 E-value=0.045 Score=51.37 Aligned_cols=87 Identities=17% Similarity=0.139 Sum_probs=56.8
Q ss_pred hhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecccccCcccCccccCCCCCC
Q 041071 44 SIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQ 123 (535)
Q Consensus 44 ~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~ 123 (535)
.+......+.||++.+. +..+-..|..+..|..|+++. +.+..+|..++.+..++.+++..|..+..|.+.+..+.++
T Consensus 37 ei~~~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhH-HHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 35566777788887654 333334455566677777775 3455566777777777777777777777777777777777
Q ss_pred EeccccCcC
Q 041071 124 WLNLNDCRS 132 (535)
Q Consensus 124 ~L~L~~c~~ 132 (535)
++++.++..
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 777666543
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=70.29 E-value=3 Score=24.68 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=11.2
Q ss_pred CCCCcEEeccCCccccc
Q 041071 285 LSSLLGIDLKECKMLQN 301 (535)
Q Consensus 285 l~~L~~L~L~~c~~L~~ 301 (535)
+++|++|+|++|..+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 35677777777766553
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=60.05 E-value=7.6 Score=23.24 Aligned_cols=16 Identities=44% Similarity=0.551 Sum_probs=9.2
Q ss_pred CCCCEEeCCCCcCCCC
Q 041071 263 CSLEELHLSGNNFFTL 278 (535)
Q Consensus 263 ~~L~~L~Ls~n~l~~l 278 (535)
.+|+.|++++|.+..+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666665543
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=56.07 E-value=7.1 Score=22.45 Aligned_cols=13 Identities=46% Similarity=0.560 Sum_probs=5.3
Q ss_pred CCCCEEeCCCCcC
Q 041071 263 CSLEELHLSGNNF 275 (535)
Q Consensus 263 ~~L~~L~Ls~n~l 275 (535)
++|+.|+|++|.+
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 3455555555543
No 89
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=51.20 E-value=7.9 Score=21.61 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=14.7
Q ss_pred cCcEEEeeccCCcccchhh
Q 041071 27 CLQELRVDGTDIKELPVSI 45 (535)
Q Consensus 27 ~L~~L~L~~~~l~~l~~~i 45 (535)
+|.+|++.+++++++|.+.
T Consensus 1 ~LVeL~m~~S~lekLW~G~ 19 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGV 19 (20)
T ss_pred CcEEEECCCCChHHhcCcc
Confidence 4778888888888887653
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=44.71 E-value=19 Score=21.74 Aligned_cols=14 Identities=50% Similarity=0.465 Sum_probs=9.0
Q ss_pred CCCCEEeCCCCcCC
Q 041071 263 CSLEELHLSGNNFF 276 (535)
Q Consensus 263 ~~L~~L~Ls~n~l~ 276 (535)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35667777777664
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.11 E-value=18 Score=38.73 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=7.2
Q ss_pred CCceeecccccCc
Q 041071 98 DLSELFLDRTSIT 110 (535)
Q Consensus 98 ~L~~L~L~~~~i~ 110 (535)
.|++|.+.||.+.
T Consensus 271 ~Leel~l~GNPlc 283 (585)
T KOG3763|consen 271 PLEELVLEGNPLC 283 (585)
T ss_pred CHHHeeecCCccc
Confidence 3555556666554
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=32.43 E-value=24 Score=37.70 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=15.8
Q ss_pred CCCCceeecccccCccc---CccccCCCCCCEeccccC
Q 041071 96 VEDLSELFLDRTSITEV---PSSIELLTKLQWLNLNDC 130 (535)
Q Consensus 96 l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~c 130 (535)
.+.+..+.|++|++..+ .+-....|+|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34444555555544422 222233455555555554
No 93
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=27.05 E-value=86 Score=21.08 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=14.8
Q ss_pred CCCcEEeccCC--cccccCCCCCCCcceEeccC
Q 041071 286 SSLLGIDLKEC--KMLQNLPRLPASIHWISLNG 316 (535)
Q Consensus 286 ~~L~~L~L~~c--~~L~~lp~lp~sL~~L~~~~ 316 (535)
+++++|.+.+. +.+. .-.+|++|+.|.+..
T Consensus 12 ~~l~~L~~g~~fn~~i~-~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 12 SSLKSLIFGSSFNQPIE-PGSLPNSLKSLSFGY 43 (44)
T ss_pred CCCeEEEECCccCccCC-CCccCCCceEEEeeC
Confidence 35556666222 2222 223677777776543
Done!