Query 041071
Match_columns 535
No_of_seqs 460 out of 3151
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 05:18:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041071.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041071hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 8.8E-33 3E-37 310.7 21.8 317 1-318 317-715 (768)
2 4eco_A Uncharacterized protein 100.0 1.9E-32 6.6E-37 301.4 23.6 311 1-318 248-598 (636)
3 3rgz_A Protein brassinosteroid 100.0 1.7E-32 5.8E-37 308.4 22.2 316 1-317 293-690 (768)
4 4eco_A Uncharacterized protein 100.0 5.1E-32 1.8E-36 298.0 19.0 293 18-316 198-545 (636)
5 4ecn_A Leucine-rich repeat pro 100.0 6.4E-31 2.2E-35 295.7 26.3 310 1-318 490-838 (876)
6 4ecn_A Leucine-rich repeat pro 100.0 3.4E-31 1.2E-35 297.9 23.3 274 18-297 440-764 (876)
7 3v47_A TOLL-like receptor 5B a 100.0 2.8E-30 9.6E-35 272.5 24.3 320 2-330 30-407 (455)
8 3vq2_A TLR4, TOLL-like recepto 100.0 6.1E-30 2.1E-34 279.9 26.9 164 161-325 369-538 (606)
9 3t6q_A CD180 antigen; protein- 100.0 4.6E-29 1.6E-33 273.0 26.5 316 2-317 33-410 (606)
10 2z63_A TOLL-like receptor 4, v 100.0 3.1E-29 1.1E-33 272.0 24.4 110 2-111 52-163 (570)
11 3vq2_A TLR4, TOLL-like recepto 100.0 5.5E-29 1.9E-33 272.3 25.5 128 3-130 33-163 (606)
12 3t6q_A CD180 antigen; protein- 100.0 2.4E-28 8.3E-33 267.2 30.1 315 1-317 56-459 (606)
13 3o6n_A APL1; leucine-rich repe 100.0 9.7E-29 3.3E-33 255.8 24.7 282 2-298 45-330 (390)
14 2z7x_B TOLL-like receptor 1, v 100.0 2.8E-29 9.5E-34 269.7 20.9 309 2-317 21-431 (520)
15 2z81_A CD282 antigen, TOLL-lik 100.0 3.3E-29 1.1E-33 270.8 20.1 312 2-317 26-441 (549)
16 3v47_A TOLL-like receptor 5B a 100.0 1.6E-28 5.5E-33 259.1 24.0 315 5-325 13-388 (455)
17 2id5_A Lingo-1, leucine rich r 100.0 1.4E-28 4.7E-33 261.4 23.5 314 5-330 14-332 (477)
18 4fmz_A Internalin; leucine ric 100.0 9.4E-28 3.2E-32 244.1 28.6 281 1-299 43-324 (347)
19 3j0a_A TOLL-like receptor 5; m 100.0 3.7E-28 1.3E-32 275.8 27.9 295 2-297 24-373 (844)
20 3oja_B Anopheles plasmodium-re 100.0 2.3E-28 7.9E-33 267.1 25.0 302 2-317 51-355 (597)
21 2z81_A CD282 antigen, TOLL-lik 100.0 1.9E-28 6.6E-33 264.7 23.4 278 1-281 49-428 (549)
22 2z7x_B TOLL-like receptor 1, v 100.0 2.2E-28 7.4E-33 262.7 22.4 312 1-330 44-480 (520)
23 4fmz_A Internalin; leucine ric 100.0 1.1E-27 3.7E-32 243.7 25.6 281 1-298 65-345 (347)
24 2id5_A Lingo-1, leucine rich r 100.0 1E-27 3.6E-32 254.6 25.6 297 2-299 32-333 (477)
25 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-27 6E-32 264.0 27.9 111 2-112 49-160 (680)
26 2z63_A TOLL-like receptor 4, v 100.0 4.4E-28 1.5E-32 262.9 22.4 133 2-134 28-163 (570)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-27 3.9E-32 259.8 24.7 313 2-330 52-509 (562)
28 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.9E-27 6.4E-32 258.0 26.0 311 3-326 32-491 (562)
29 3j0a_A TOLL-like receptor 5; m 100.0 5.2E-27 1.8E-31 266.4 26.9 276 1-277 47-376 (844)
30 1o6v_A Internalin A; bacterial 100.0 1.6E-26 5.5E-31 244.9 28.8 295 2-317 46-341 (466)
31 1o6v_A Internalin A; bacterial 100.0 1.3E-26 4.5E-31 245.6 27.9 296 1-318 67-364 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-26 3.7E-31 245.3 26.3 277 2-329 42-329 (457)
33 3o6n_A APL1; leucine-rich repe 99.9 1.1E-26 3.9E-31 240.2 24.1 281 1-298 68-351 (390)
34 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-27 3.9E-32 240.4 14.4 251 26-303 50-308 (313)
35 1ziw_A TOLL-like receptor 3; i 99.9 3.2E-26 1.1E-30 253.8 27.0 294 3-297 26-364 (680)
36 2ft3_A Biglycan; proteoglycan, 99.9 3.2E-26 1.1E-30 231.6 23.8 245 26-279 33-280 (332)
37 1xku_A Decorin; proteoglycan, 99.9 5.6E-26 1.9E-30 229.6 25.3 242 26-297 31-274 (330)
38 3oja_B Anopheles plasmodium-re 99.9 2.1E-26 7.2E-31 251.6 23.8 282 1-299 74-358 (597)
39 1ogq_A PGIP-2, polygalacturona 99.9 2.3E-27 7.8E-32 238.2 14.1 231 49-305 50-287 (313)
40 2ft3_A Biglycan; proteoglycan, 99.9 1E-25 3.5E-30 227.9 24.6 284 3-298 34-332 (332)
41 1xku_A Decorin; proteoglycan, 99.9 4E-25 1.4E-29 223.3 27.8 262 3-298 32-305 (330)
42 4fcg_A Uncharacterized protein 99.9 4.9E-26 1.7E-30 230.0 19.1 220 26-296 81-311 (328)
43 1jl5_A Outer protein YOPM; leu 99.9 6.2E-26 2.1E-30 239.3 20.1 283 2-317 11-307 (454)
44 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-24 3.9E-29 229.9 29.0 276 1-303 63-355 (457)
45 4fcg_A Uncharacterized protein 99.9 1.5E-25 5.3E-30 226.4 21.3 231 48-328 80-311 (328)
46 1jl5_A Outer protein YOPM; leu 99.9 2E-24 6.7E-29 227.9 30.1 256 26-317 111-367 (454)
47 4g8a_A TOLL-like receptor 4; l 99.9 4E-25 1.4E-29 242.1 24.4 129 3-132 53-185 (635)
48 4g8a_A TOLL-like receptor 4; l 99.9 1.8E-24 6.1E-29 237.0 27.1 112 1-112 75-188 (635)
49 2z80_A TOLL-like receptor 2, v 99.9 1.1E-25 3.7E-30 229.7 14.4 272 5-299 34-314 (353)
50 3zyj_A Leucine-rich repeat-con 99.9 1.8E-23 6.3E-28 219.7 24.7 245 27-298 44-291 (440)
51 3zyi_A Leucine-rich repeat-con 99.9 2.1E-23 7.3E-28 220.0 23.8 245 27-298 55-302 (452)
52 3g06_A SSPH2 (leucine-rich rep 99.9 5.6E-23 1.9E-27 223.9 27.7 261 3-303 41-301 (622)
53 3o53_A Protein LRIM1, AGAP0063 99.9 2E-25 7E-30 224.3 6.9 261 5-301 13-277 (317)
54 2z66_A Variable lymphocyte rec 99.9 1.7E-23 5.9E-28 208.9 20.6 243 29-298 10-260 (306)
55 2z66_A Variable lymphocyte rec 99.9 3.9E-24 1.3E-28 213.6 14.7 245 5-277 10-262 (306)
56 1ozn_A Reticulon 4 receptor; N 99.9 2.1E-23 7.3E-28 206.1 17.6 203 2-204 32-238 (285)
57 3zyj_A Leucine-rich repeat-con 99.9 1.4E-22 4.9E-27 212.9 24.8 244 4-276 45-292 (440)
58 3zyi_A Leucine-rich repeat-con 99.9 1.8E-22 6E-27 213.0 25.4 244 4-276 56-303 (452)
59 1wwl_A Monocyte differentiatio 99.9 6.9E-25 2.4E-29 220.0 6.0 248 21-298 38-308 (312)
60 1ozn_A Reticulon 4 receptor; N 99.9 5.1E-23 1.7E-27 203.4 16.4 221 29-298 14-237 (285)
61 2z80_A TOLL-like receptor 2, v 99.9 3.7E-23 1.3E-27 210.9 14.9 254 2-279 52-317 (353)
62 1wwl_A Monocyte differentiatio 99.9 6.3E-24 2.2E-28 212.9 7.9 241 2-277 43-310 (312)
63 1z7x_W Ribonuclease inhibitor; 99.9 2.7E-25 9.2E-30 234.7 -4.7 317 1-317 27-408 (461)
64 1z7x_W Ribonuclease inhibitor; 99.9 6E-25 2E-29 232.0 -4.4 317 1-317 2-380 (461)
65 3g06_A SSPH2 (leucine-rich rep 99.9 5.6E-21 1.9E-25 208.1 26.6 238 26-303 40-277 (622)
66 3o53_A Protein LRIM1, AGAP0063 99.9 4.4E-22 1.5E-26 199.9 12.7 236 28-299 12-250 (317)
67 3oja_A Leucine-rich immune mol 99.9 3.4E-22 1.2E-26 212.7 11.8 236 25-296 33-272 (487)
68 3oja_A Leucine-rich immune mol 99.8 4.1E-22 1.4E-26 212.0 6.7 235 2-271 34-270 (487)
69 2z62_A TOLL-like receptor 4, v 99.8 3.1E-20 1E-24 182.5 19.5 215 36-298 17-236 (276)
70 2z62_A TOLL-like receptor 4, v 99.8 5E-20 1.7E-24 181.0 20.6 196 6-204 11-213 (276)
71 1p9a_G Platelet glycoprotein I 99.8 8.1E-20 2.8E-24 181.1 19.9 129 22-154 6-134 (290)
72 1p9a_G Platelet glycoprotein I 99.8 3.3E-19 1.1E-23 176.7 21.1 201 45-298 6-207 (290)
73 3ogk_B Coronatine-insensitive 99.8 1.6E-22 5.4E-27 220.3 -3.5 85 234-318 432-524 (592)
74 2ast_B S-phase kinase-associat 99.8 7.6E-21 2.6E-25 192.0 8.3 248 27-303 48-310 (336)
75 2ast_B S-phase kinase-associat 99.8 2.6E-21 8.9E-26 195.5 4.8 250 4-283 49-314 (336)
76 3ogk_B Coronatine-insensitive 99.8 1.5E-21 5.2E-26 212.5 3.2 296 1-298 163-525 (592)
77 2o6q_A Variable lymphocyte rec 99.8 9.3E-19 3.2E-23 171.4 21.9 133 27-184 17-149 (270)
78 2o6q_A Variable lymphocyte rec 99.8 8.8E-19 3E-23 171.6 21.4 200 3-205 17-219 (270)
79 2xwt_C Thyrotropin receptor; s 99.8 3.3E-19 1.1E-23 171.3 17.3 197 50-298 32-238 (239)
80 2ca6_A RAN GTPase-activating p 99.8 3.1E-21 1.1E-25 199.1 2.3 249 34-301 17-318 (386)
81 4glp_A Monocyte differentiatio 99.8 6.6E-19 2.2E-23 176.1 18.3 199 73-299 91-307 (310)
82 1h6u_A Internalin H; cell adhe 99.8 4.1E-19 1.4E-23 177.5 16.7 146 46-201 38-183 (308)
83 2xwt_C Thyrotropin receptor; s 99.8 6.1E-19 2.1E-23 169.5 16.1 196 98-320 32-239 (239)
84 3rfs_A Internalin B, repeat mo 99.8 3.4E-19 1.2E-23 174.8 14.6 207 46-287 38-247 (272)
85 4glp_A Monocyte differentiatio 99.8 2.7E-19 9.2E-24 179.0 13.7 199 2-204 91-307 (310)
86 3rfs_A Internalin B, repeat mo 99.8 1.1E-18 3.7E-23 171.2 17.6 208 23-239 38-247 (272)
87 1h6u_A Internalin H; cell adhe 99.8 1.2E-18 3.9E-23 174.3 17.5 189 2-203 41-229 (308)
88 3goz_A Leucine-rich repeat-con 99.8 1.3E-20 4.4E-25 192.8 2.8 252 6-276 2-297 (362)
89 4ay9_X Follicle-stimulating ho 99.8 5.7E-18 2E-22 172.3 20.4 223 29-304 12-241 (350)
90 2ca6_A RAN GTPase-activating p 99.8 1.1E-19 3.8E-24 187.5 3.0 244 17-279 23-319 (386)
91 4ay9_X Follicle-stimulating ho 99.8 1.9E-17 6.5E-22 168.5 19.2 236 5-295 12-255 (350)
92 2p1m_B Transport inhibitor res 99.8 2.7E-20 9.1E-25 202.7 -2.9 317 1-319 129-518 (594)
93 2p1m_B Transport inhibitor res 99.7 2.3E-20 7.7E-25 203.2 -4.2 154 1-154 65-245 (594)
94 3m19_A Variable lymphocyte rec 99.7 5.3E-17 1.8E-21 157.1 18.2 177 27-205 15-193 (251)
95 3m19_A Variable lymphocyte rec 99.7 5.1E-17 1.7E-21 157.3 17.9 178 3-183 15-194 (251)
96 3goz_A Leucine-rich repeat-con 99.7 3.9E-19 1.3E-23 181.8 0.7 250 30-298 2-296 (362)
97 3cvr_A Invasion plasmid antige 99.7 1.5E-16 5.3E-21 171.2 18.0 118 50-185 60-177 (571)
98 3cvr_A Invasion plasmid antige 99.7 3.4E-16 1.1E-20 168.5 19.4 178 3-205 60-244 (571)
99 1h6t_A Internalin B; cell adhe 99.7 2.1E-16 7.2E-21 156.5 16.3 170 24-204 44-213 (291)
100 1h6t_A Internalin B; cell adhe 99.7 2.8E-16 9.5E-21 155.6 15.4 172 70-300 43-214 (291)
101 4ezg_A Putative uncharacterize 99.7 1.8E-16 6.2E-21 147.5 12.2 152 46-203 41-193 (197)
102 1dce_A Protein (RAB geranylger 99.7 7.1E-19 2.4E-23 190.0 -8.6 217 23-293 346-567 (567)
103 2o6s_A Variable lymphocyte rec 99.6 1.2E-15 4E-20 143.1 14.3 178 5-192 10-190 (208)
104 2o6s_A Variable lymphocyte rec 99.6 1.3E-15 4.4E-20 142.8 14.2 173 29-209 10-183 (208)
105 1m9s_A Internalin B; cell inva 99.6 2.4E-15 8.1E-20 163.5 17.4 193 49-279 21-213 (605)
106 1m9s_A Internalin B; cell inva 99.6 1.9E-15 6.4E-20 164.3 16.6 170 24-204 41-210 (605)
107 4ezg_A Putative uncharacterize 99.6 1.2E-15 4.2E-20 141.9 12.8 154 23-182 41-195 (197)
108 1dce_A Protein (RAB geranylger 99.6 3.6E-17 1.2E-21 176.7 -0.7 179 94-301 346-548 (567)
109 2v9t_B SLIT homolog 2 protein 99.6 6.4E-15 2.2E-19 139.6 14.5 151 29-181 14-165 (220)
110 2v70_A SLIT-2, SLIT homolog 2 99.6 1.2E-14 4.1E-19 137.7 16.3 150 30-181 15-166 (220)
111 1xeu_A Internalin C; cellular 99.6 1.4E-15 4.8E-20 148.2 9.7 169 96-300 18-186 (263)
112 3e6j_A Variable lymphocyte rec 99.6 2.1E-14 7.3E-19 136.8 16.4 149 29-181 22-172 (229)
113 2xot_A Amphoterin-induced prot 99.6 1.5E-14 5E-19 147.7 15.7 173 29-204 21-202 (361)
114 2xot_A Amphoterin-induced prot 99.6 1E-14 3.5E-19 148.9 14.4 173 5-181 21-202 (361)
115 2v70_A SLIT-2, SLIT homolog 2 99.6 1.8E-14 6.1E-19 136.5 14.6 150 5-157 14-166 (220)
116 2v9t_B SLIT homolog 2 protein 99.6 2.7E-14 9.3E-19 135.2 15.8 149 5-156 14-164 (220)
117 1xeu_A Internalin C; cellular 99.6 3.7E-15 1.3E-19 145.3 9.7 167 25-203 18-184 (263)
118 3e6j_A Variable lymphocyte rec 99.6 2.4E-14 8.1E-19 136.5 15.0 150 5-157 22-172 (229)
119 4b8c_D Glucose-repressible alc 99.5 4.8E-15 1.6E-19 164.9 7.1 191 26-248 173-369 (727)
120 2ell_A Acidic leucine-rich nuc 99.5 3.8E-14 1.3E-18 128.1 11.4 129 24-155 22-158 (168)
121 2ell_A Acidic leucine-rich nuc 99.5 5.7E-14 1.9E-18 126.9 9.9 134 48-185 23-164 (168)
122 2je0_A Acidic leucine-rich nuc 99.5 4.1E-14 1.4E-18 125.1 7.6 126 25-152 16-148 (149)
123 4b8c_D Glucose-repressible alc 99.5 2.2E-14 7.6E-19 159.5 7.2 190 3-201 174-369 (727)
124 2je0_A Acidic leucine-rich nuc 99.5 1.1E-13 3.9E-18 122.3 8.3 126 49-176 17-148 (149)
125 2wfh_A SLIT homolog 2 protein 99.4 2.4E-12 8.2E-17 119.2 14.1 123 6-155 14-137 (193)
126 1w8a_A SLIT protein; signaling 99.4 2E-12 7E-17 119.5 13.4 129 29-159 11-141 (192)
127 1w8a_A SLIT protein; signaling 99.4 2.4E-12 8.2E-17 119.0 13.0 126 5-133 11-139 (192)
128 1a9n_A U2A', U2A'; complex (nu 99.4 1.2E-12 4E-17 119.3 9.6 129 23-155 16-151 (176)
129 3sb4_A Hypothetical leucine ri 99.4 6.6E-13 2.3E-17 133.6 8.2 195 72-297 100-308 (329)
130 1a9n_A U2A', U2A'; complex (nu 99.3 2.5E-12 8.5E-17 117.1 9.3 132 45-182 15-154 (176)
131 2wfh_A SLIT homolog 2 protein 99.3 1.2E-11 4.3E-16 114.3 12.7 124 53-181 14-139 (193)
132 2o6r_A Variable lymphocyte rec 99.3 2.8E-11 9.5E-16 110.1 13.8 130 28-159 9-139 (177)
133 2o6r_A Variable lymphocyte rec 99.3 3.3E-11 1.1E-15 109.6 13.4 129 4-135 9-139 (177)
134 1ds9_A Outer arm dynein; leuci 99.3 3.2E-14 1.1E-18 132.3 -7.1 148 27-181 24-185 (198)
135 3sb4_A Hypothetical leucine ri 99.3 1E-11 3.5E-16 124.8 10.5 193 1-198 48-328 (329)
136 1ds9_A Outer arm dynein; leuci 99.2 2E-13 6.8E-18 126.9 -6.0 148 45-197 14-180 (198)
137 4fdw_A Leucine rich hypothetic 99.1 4.8E-09 1.6E-13 108.2 22.2 240 24-298 111-357 (401)
138 4fs7_A Uncharacterized protein 99.1 2.8E-09 9.6E-14 109.7 19.9 299 20-348 65-391 (394)
139 2r9u_A Variable lymphocyte rec 99.1 5.4E-10 1.8E-14 101.4 10.7 100 29-131 15-116 (174)
140 3g39_A Variable lymphocyte rec 99.1 5E-10 1.7E-14 101.2 10.4 101 28-130 11-112 (170)
141 3g39_A Variable lymphocyte rec 99.0 1.5E-09 5E-14 98.1 11.8 107 4-113 11-118 (170)
142 2r9u_A Variable lymphocyte rec 99.0 1E-09 3.5E-14 99.6 10.8 108 4-116 14-124 (174)
143 4fdw_A Leucine rich hypothetic 99.0 3.3E-08 1.1E-12 101.8 23.3 235 47-327 111-354 (401)
144 3un9_A NLR family member X1; l 98.9 9.4E-11 3.2E-15 119.8 -2.4 156 26-181 72-252 (372)
145 4fs7_A Uncharacterized protein 98.9 6.5E-08 2.2E-12 99.4 18.9 298 1-323 70-393 (394)
146 2ifg_A High affinity nerve gro 98.8 1.5E-08 5.2E-13 102.1 9.8 101 30-131 12-114 (347)
147 2ifg_A High affinity nerve gro 98.8 2.1E-08 7.1E-13 101.1 10.5 103 6-111 12-117 (347)
148 3un9_A NLR family member X1; l 98.8 6.4E-10 2.2E-14 113.6 -0.9 158 48-205 71-253 (372)
149 2ra8_A Uncharacterized protein 98.6 1.8E-08 6.2E-13 102.2 5.0 179 19-202 132-341 (362)
150 4gt6_A Cell surface protein; l 98.6 1.9E-06 6.6E-11 88.4 19.9 84 233-328 283-367 (394)
151 2ra8_A Uncharacterized protein 98.6 4.1E-08 1.4E-12 99.5 6.8 176 25-203 106-319 (362)
152 4gt6_A Cell surface protein; l 98.6 5.7E-06 1.9E-10 84.8 21.8 102 231-348 258-360 (394)
153 4h09_A Hypothetical leucine ri 98.4 4.8E-05 1.6E-09 77.3 23.1 285 22-327 42-342 (379)
154 4h09_A Hypothetical leucine ri 98.3 5.5E-05 1.9E-09 76.8 22.5 58 233-292 281-339 (379)
155 1io0_A Tropomodulin; LRR prote 97.9 3.6E-06 1.2E-10 76.8 2.5 113 43-155 30-162 (185)
156 1io0_A Tropomodulin; LRR prote 97.9 4.8E-06 1.7E-10 75.9 3.3 112 69-180 32-163 (185)
157 3e4g_A ATP synthase subunit S, 97.8 2.5E-05 8.4E-10 70.1 5.4 87 120-206 61-154 (176)
158 3rw6_A Nuclear RNA export fact 97.7 2.1E-05 7.3E-10 75.7 4.4 79 23-103 167-257 (267)
159 3e4g_A ATP synthase subunit S, 97.6 3E-05 1E-09 69.6 4.0 41 120-160 114-155 (176)
160 3rw6_A Nuclear RNA export fact 97.4 0.00011 3.6E-09 70.8 4.7 80 94-175 167-258 (267)
161 1pgv_A TMD-1, tropomodulin TMD 95.4 0.0093 3.2E-07 54.3 3.6 107 24-130 39-167 (197)
162 1pgv_A TMD-1, tropomodulin TMD 95.3 0.011 3.6E-07 53.9 3.8 40 45-84 37-81 (197)
163 3rfe_A Platelet glycoprotein I 94.9 0.06 2.1E-06 45.4 7.0 56 241-298 11-67 (130)
164 3rfe_A Platelet glycoprotein I 93.5 0.11 3.7E-06 43.7 5.7 52 30-83 12-65 (130)
165 3ukw_C Bimax1 peptide; arm rep 38.2 6.8 0.00023 21.8 0.0 11 521-531 15-25 (28)
166 2lz0_A Uncharacterized protein 32.1 25 0.00084 27.6 2.4 31 314-348 16-46 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.8e-33 Score=310.67 Aligned_cols=317 Identities=22% Similarity=0.216 Sum_probs=197.2
Q ss_pred CCCCcEEecCCCcCCCCCCcc-cCCCCcCcEEEeeccCCc-ccchhhhcCC-CccEEeccCCCCC---------------
Q 041071 1 MESLKTLVLSGCSKLKKFPDI-VGGMECLQELRVDGTDIK-ELPVSIELMS-GLVSLNLKDCRNL--------------- 62 (535)
Q Consensus 1 L~~L~~L~Ls~~~~l~~lp~~-~~~~~~L~~L~L~~~~l~-~l~~~i~~l~-~L~~L~Ls~~~~l--------------- 62 (535)
+++|++|+|++|...+.+|.. ++.+++|++|++++|.+. .+|..+..+. +|++|++++|...
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 467778888877666566643 667777777777777776 6666665554 5555555555433
Q ss_pred -----------CccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecccccCc-ccCccccCCCCCCEeccccC
Q 041071 63 -----------TTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSIT-EVPSSIELLTKLQWLNLNDC 130 (535)
Q Consensus 63 -----------~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c 130 (535)
..+|..++++++|++|++++|...+.+|..++.+++|++|++++|.+. .+|..++.+++|+.|++++|
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 344555555555555555555544455555555666666666666555 45555666666666666666
Q ss_pred cCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCcccc-CCCcccccCCCCcEEEcCCCCCCCCCCc
Q 041071 131 RSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIR-QPLSSIFLMKNLKELSCRGCKGSPSSAS 209 (535)
Q Consensus 131 ~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~-~~~~~i~~l~~L~~L~L~~~~~~~~~~~ 209 (535)
...+.+|..+.++++|++|++++|...+.+|.+++.+++|+.|++++|.+. .+|..+..+++|+.|++++|......+.
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 555556666666666666666666555566666666666666666666665 4555666666666666666654322221
Q ss_pred ccccc-----------------------------------------------ccccccccCCCcccccCCcccCCCCCCE
Q 041071 210 WFLRF-----------------------------------------------PINLMRWSSNPVALSFPSSLSGLCSLTK 242 (535)
Q Consensus 210 ~~~~~-----------------------------------------------~l~~l~l~~n~~~~~lp~~l~~l~~L~~ 242 (535)
..... ....+++..+.+.+..|..+..+++|+.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~ 636 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence 11100 0001122223444445555666777888
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCC-CCChhhcCCCCCcEEeccCCcccccCCCC---CCCcceEeccCcc
Q 041071 243 LDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFF-TLPASIYRLSSLLGIDLKECKMLQNLPRL---PASIHWISLNGCV 318 (535)
Q Consensus 243 L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---p~sL~~L~~~~C~ 318 (535)
|+|++|+++ +.+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|+|++|+..+.+|.. .++|+.|+++++.
T Consensus 637 LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 637 LDMSYNMLS-GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp EECCSSCCB-SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred EECcCCccc-ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 888888874 567888888888888888888887 77888888888888888888877777752 2456666666654
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.9e-32 Score=301.36 Aligned_cols=311 Identities=15% Similarity=0.196 Sum_probs=276.5
Q ss_pred CCCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccC-Cc--ccchhhhcC------CCccEEeccCCCCCCccCc--cc
Q 041071 1 MESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTD-IK--ELPVSIELM------SGLVSLNLKDCRNLTTLPI--TI 69 (535)
Q Consensus 1 L~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~-l~--~l~~~i~~l------~~L~~L~Ls~~~~l~~lp~--~l 69 (535)
|++|++|+|++|...+.+|+.++++++|++|++++|. +. .+|..++.+ ++|++|++++|... .+|. .+
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l 326 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL 326 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh
Confidence 5789999999999999999999999999999999998 87 599988887 99999999998765 8998 89
Q ss_pred CCCCCCCEEeccCCCCCccCcccccCCCCCceeecccccCcccCccccCCCC-CCEeccccCcCCCccCccccCCC--CC
Q 041071 70 GNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTK-LQWLNLNDCRSLVRLPSSINGLT--SL 146 (535)
Q Consensus 70 ~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~-L~~L~L~~c~~l~~lp~~i~~l~--~L 146 (535)
+++++|++|++++|...+.+| .+..+++|++|++++|.+..+|..++.+++ |+.|++++|... .+|..+..++ +|
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L 404 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVM 404 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCE
T ss_pred ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCcc
Confidence 999999999999988766899 899999999999999999999999999999 999999998865 8898877655 89
Q ss_pred ceeeccCccCCCCchhhhh-------ccccccEEEecCccccCCCcccc-cCCCCcEEEcCCCCCCCCCCcccccc----
Q 041071 147 KTLNLSGCFKLENVPETLR-------QIESLEKLDISGTAIRQPLSSIF-LMKNLKELSCRGCKGSPSSASWFLRF---- 214 (535)
Q Consensus 147 ~~L~Ls~c~~l~~lp~~l~-------~l~~L~~L~L~~~~i~~~~~~i~-~l~~L~~L~L~~~~~~~~~~~~~~~~---- 214 (535)
++|++++|......|..+. .+++|+.|++++|.+..+|..+. .+++|+.|++++|.........+...
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484 (636)
T ss_dssp EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEEC
T ss_pred CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccc
Confidence 9999999988888888887 78899999999999999987765 48999999999999875544444333
Q ss_pred ----ccccccccCCCcccccCCccc--CCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCC------CCcCC-CCChh
Q 041071 215 ----PINLMRWSSNPVALSFPSSLS--GLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLS------GNNFF-TLPAS 281 (535)
Q Consensus 215 ----~l~~l~l~~n~~~~~lp~~l~--~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls------~n~l~-~lp~~ 281 (535)
.++.++++.|.+. .+|..+. .+++|+.|+|++|.+.. +|..+..+++|+.|+|+ +|.+. .+|..
T Consensus 485 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~ 561 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561 (636)
T ss_dssp TTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT
T ss_pred cccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHH
Confidence 7889999999998 7888787 99999999999999975 89999999999999995 45554 88999
Q ss_pred hcCCCCCcEEeccCCcccccCCC-CCCCcceEeccCcc
Q 041071 282 IYRLSSLLGIDLKECKMLQNLPR-LPASIHWISLNGCV 318 (535)
Q Consensus 282 i~~l~~L~~L~L~~c~~L~~lp~-lp~sL~~L~~~~C~ 318 (535)
+..+++|++|+|++|+. +.+|. +.++|+.|++++++
T Consensus 562 l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 562 ITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNP 598 (636)
T ss_dssp GGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCT
T ss_pred HhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCC
Confidence 99999999999999987 88886 67899999999885
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.7e-32 Score=308.35 Aligned_cols=316 Identities=23% Similarity=0.298 Sum_probs=281.0
Q ss_pred CCCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCc-ccchh-hhcCCCccEEeccCCCCCCccCcccCCCC-CCCE
Q 041071 1 MESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIK-ELPVS-IELMSGLVSLNLKDCRNLTTLPITIGNLE-CLQT 77 (535)
Q Consensus 1 L~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~-~l~~~-i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~-~L~~ 77 (535)
+++|++|+|++|...+.+|..++.+++|++|++++|.+. .+|.. ++.+++|++|++++|.....+|..+.+++ +|++
T Consensus 293 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~ 372 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372 (768)
T ss_dssp CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSE
T ss_pred cCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcE
Confidence 478999999999888889999999999999999999997 88876 89999999999999987778898888887 9999
Q ss_pred EeccCCCCCccCcccccC--CCCCceeecccccCc-ccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCc
Q 041071 78 LVLSGCSKIVKFPETVIS--VEDLSELFLDRTSIT-EVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGC 154 (535)
Q Consensus 78 L~Ls~c~~l~~~p~~l~~--l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c 154 (535)
|++++|...+.+|..+.. +++|++|++++|.+. .+|..++.+++|+.|++++|...+.+|..+..+++|++|++++|
T Consensus 373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC
Confidence 999999887778887776 889999999999998 78889999999999999999988899999999999999999999
Q ss_pred cCCCCchhhhhccccccEEEecCcccc-CCCcccccCCCCcEEEcCCCCCCCCCCccccc-cccccccccCCCcccccCC
Q 041071 155 FKLENVPETLRQIESLEKLDISGTAIR-QPLSSIFLMKNLKELSCRGCKGSPSSASWFLR-FPINLMRWSSNPVALSFPS 232 (535)
Q Consensus 155 ~~l~~lp~~l~~l~~L~~L~L~~~~i~-~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~-~~l~~l~l~~n~~~~~lp~ 232 (535)
...+.+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|......+.++.. ..++.+++++|.+.+.+|.
T Consensus 453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 532 (768)
T 3rgz_A 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH
Confidence 888899999999999999999999999 67888999999999999999988666665544 4589999999999999999
Q ss_pred cccCCCCCCEEecCCCCCCCCCCC--------------------------------------------------------
Q 041071 233 SLSGLCSLTKLDISDCDLGEGAIP-------------------------------------------------------- 256 (535)
Q Consensus 233 ~l~~l~~L~~L~Ls~~~l~~~~lp-------------------------------------------------------- 256 (535)
.+..+++|+.|+|++|.+. +.+|
T Consensus 533 ~l~~l~~L~~L~Ls~N~l~-g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (768)
T 3rgz_A 533 ELGDCRSLIWLDLNTNLFN-GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611 (768)
T ss_dssp GGGGCTTCCEEECCSSEEE-SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTC
T ss_pred HHcCCCCCCEEECCCCccC-CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccc
Confidence 9999999999999999764 2233
Q ss_pred --------------CCCCCCCCCCEEeCCCCcCC-CCChhhcCCCCCcEEeccCCcccccCCCC---CCCcceEeccCc
Q 041071 257 --------------SSIGDLCSLEELHLSGNNFF-TLPASIYRLSSLLGIDLKECKMLQNLPRL---PASIHWISLNGC 317 (535)
Q Consensus 257 --------------~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---p~sL~~L~~~~C 317 (535)
..+..+++|+.|+|++|++. .+|..++.++.|+.|+|++|+..+.+|.- .++|+.|+++++
T Consensus 612 ~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N 690 (768)
T 3rgz_A 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690 (768)
T ss_dssp CSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred ccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC
Confidence 34555788999999999998 89999999999999999999998889862 256777777665
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.98 E-value=5.1e-32 Score=297.99 Aligned_cols=293 Identities=16% Similarity=0.232 Sum_probs=249.8
Q ss_pred CCcccCCCCcCcEEEeeccCCcc------------------cchhhh--cCCCccEEeccCCCCCCccCcccCCCCCCCE
Q 041071 18 FPDIVGGMECLQELRVDGTDIKE------------------LPVSIE--LMSGLVSLNLKDCRNLTTLPITIGNLECLQT 77 (535)
Q Consensus 18 lp~~~~~~~~L~~L~L~~~~l~~------------------l~~~i~--~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~ 77 (535)
+|..++++++|++|+|++|.+.. +|..++ ++++|++|++++|.....+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 78888999999999999999998 999998 9999999999999999999999999999999
Q ss_pred EeccCCC-CCc-cCcccccCC------CCCceeecccccCcccCc--cccCCCCCCEeccccCcCCCccCccccCCCCCc
Q 041071 78 LVLSGCS-KIV-KFPETVISV------EDLSELFLDRTSITEVPS--SIELLTKLQWLNLNDCRSLVRLPSSINGLTSLK 147 (535)
Q Consensus 78 L~Ls~c~-~l~-~~p~~l~~l------~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~ 147 (535)
|++++|. ... .+|..++.+ ++|++|++++|.+..+|. .++.+++|+.|++++|...+.+| .+..+++|+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 9999998 444 689888876 999999999999999999 99999999999999998877899 888999999
Q ss_pred eeeccCccCCCCchhhhhcccc-ccEEEecCccccCCCcccccCC--CCcEEEcCCCCCCCCCCcccc--------cccc
Q 041071 148 TLNLSGCFKLENVPETLRQIES-LEKLDISGTAIRQPLSSIFLMK--NLKELSCRGCKGSPSSASWFL--------RFPI 216 (535)
Q Consensus 148 ~L~Ls~c~~l~~lp~~l~~l~~-L~~L~L~~~~i~~~~~~i~~l~--~L~~L~L~~~~~~~~~~~~~~--------~~~l 216 (535)
+|++++|. +..+|..+..+++ |+.|++++|.+..+|..+..+. +|+.|++++|......+..+. ...+
T Consensus 357 ~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 357 SLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp EEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred EEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence 99999995 4588999999999 9999999999999998877755 899999999998765444333 2358
Q ss_pred ccccccCCCcccccCC-cccCCCCCCEEecCCCCCCCCCCCCCCCC--------CCCCCEEeCCCCcCCCCChhhc--CC
Q 041071 217 NLMRWSSNPVALSFPS-SLSGLCSLTKLDISDCDLGEGAIPSSIGD--------LCSLEELHLSGNNFFTLPASIY--RL 285 (535)
Q Consensus 217 ~~l~l~~n~~~~~lp~-~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~--------l~~L~~L~Ls~n~l~~lp~~i~--~l 285 (535)
+.+++++|.+.. +|. .+..+++|+.|+|++|.+. .+|..+.. +++|+.|+|++|.+..+|..+. .+
T Consensus 436 ~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l 512 (636)
T 4eco_A 436 SSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT--EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL 512 (636)
T ss_dssp EEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS--BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTC
T ss_pred CEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC--CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccC
Confidence 899999999984 554 4556899999999999996 37765433 2389999999999999999887 89
Q ss_pred CCCcEEeccCCcccccCCCC---CCCcceEeccC
Q 041071 286 SSLLGIDLKECKMLQNLPRL---PASIHWISLNG 316 (535)
Q Consensus 286 ~~L~~L~L~~c~~L~~lp~l---p~sL~~L~~~~ 316 (535)
++|+.|++++|+... +|.- .++|+.|++++
T Consensus 513 ~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 513 PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp TTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCS
T ss_pred CCcCEEECCCCCCCC-cChhhhcCCCCCEEECCC
Confidence 999999999998655 6641 23455555543
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=6.4e-31 Score=295.70 Aligned_cols=310 Identities=14% Similarity=0.185 Sum_probs=269.5
Q ss_pred CCCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccC-Cc--ccchhhhcCC-------CccEEeccCCCCCCccCc--c
Q 041071 1 MESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTD-IK--ELPVSIELMS-------GLVSLNLKDCRNLTTLPI--T 68 (535)
Q Consensus 1 L~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~-l~--~l~~~i~~l~-------~L~~L~Ls~~~~l~~lp~--~ 68 (535)
|++|++|+|++|...+.+|..++++++|++|+|++|. +. .+|..++.+. +|+.|++++|... .+|. .
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~ 568 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS 568 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh
Confidence 5789999999999999999999999999999999998 87 4888777766 9999999998765 8998 8
Q ss_pred cCCCCCCCEEeccCCCCCccCcccccCCCCCceeecccccCcccCccccCCCC-CCEeccccCcCCCccCccccCCCC--
Q 041071 69 IGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTK-LQWLNLNDCRSLVRLPSSINGLTS-- 145 (535)
Q Consensus 69 l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~-L~~L~L~~c~~l~~lp~~i~~l~~-- 145 (535)
++++++|+.|+|++|... .+| .++.+++|+.|++++|.+..+|..+..+++ |+.|++++|... .+|..+..++.
T Consensus 569 l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~ 645 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYV 645 (876)
T ss_dssp HTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSC
T ss_pred hhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCC
Confidence 999999999999998755 888 899999999999999999999999999999 999999999855 88988877654
Q ss_pred CceeeccCccCCCCchh---hhh--ccccccEEEecCccccCCCcccc-cCCCCcEEEcCCCCCCCCCCcccccc-----
Q 041071 146 LKTLNLSGCFKLENVPE---TLR--QIESLEKLDISGTAIRQPLSSIF-LMKNLKELSCRGCKGSPSSASWFLRF----- 214 (535)
Q Consensus 146 L~~L~Ls~c~~l~~lp~---~l~--~l~~L~~L~L~~~~i~~~~~~i~-~l~~L~~L~L~~~~~~~~~~~~~~~~----- 214 (535)
|+.|++++|.....+|. .++ .+.+|+.|++++|.+..+|..+. .+++|+.|++++|.....+...+...
T Consensus 646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~ 725 (876)
T 4ecn_A 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725 (876)
T ss_dssp EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCT
T ss_pred CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccccccc
Confidence 99999999976655443 233 34589999999999999998775 78999999999998775444333322
Q ss_pred ---ccccccccCCCcccccCCccc--CCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCC------CcCC-CCChhh
Q 041071 215 ---PINLMRWSSNPVALSFPSSLS--GLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSG------NNFF-TLPASI 282 (535)
Q Consensus 215 ---~l~~l~l~~n~~~~~lp~~l~--~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~------n~l~-~lp~~i 282 (535)
.++.+++++|.+. .+|..+. .+++|+.|+|++|.+.. +|..+..+++|+.|+|++ |.+. .+|..+
T Consensus 726 nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l 802 (876)
T 4ecn_A 726 NTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802 (876)
T ss_dssp TGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred ccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence 6889999999998 7888887 99999999999999975 899999999999999987 5554 789999
Q ss_pred cCCCCCcEEeccCCcccccCCC-CCCCcceEeccCcc
Q 041071 283 YRLSSLLGIDLKECKMLQNLPR-LPASIHWISLNGCV 318 (535)
Q Consensus 283 ~~l~~L~~L~L~~c~~L~~lp~-lp~sL~~L~~~~C~ 318 (535)
..+++|+.|+|++|+. +.+|. ++++|+.|++++|+
T Consensus 803 ~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 803 TTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNP 838 (876)
T ss_dssp GGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCT
T ss_pred hcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCC
Confidence 9999999999999987 88986 77899999999986
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=3.4e-31 Score=297.93 Aligned_cols=274 Identities=16% Similarity=0.196 Sum_probs=192.0
Q ss_pred CCcccCCCCcCcEEEeeccCCcc------------------cchhhh--cCCCccEEeccCCCCCCccCcccCCCCCCCE
Q 041071 18 FPDIVGGMECLQELRVDGTDIKE------------------LPVSIE--LMSGLVSLNLKDCRNLTTLPITIGNLECLQT 77 (535)
Q Consensus 18 lp~~~~~~~~L~~L~L~~~~l~~------------------l~~~i~--~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~ 77 (535)
+|..++++++|++|+|++|.+.. +|..++ .+++|++|+|++|.....+|..++++++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 77778889999999999999887 888877 8999999999998888889988999999999
Q ss_pred EeccCCC-CCc-cCcccccCCC-------CCceeecccccCcccCc--cccCCCCCCEeccccCcCCCccCccccCCCCC
Q 041071 78 LVLSGCS-KIV-KFPETVISVE-------DLSELFLDRTSITEVPS--SIELLTKLQWLNLNDCRSLVRLPSSINGLTSL 146 (535)
Q Consensus 78 L~Ls~c~-~l~-~~p~~l~~l~-------~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L 146 (535)
|+|++|. ... .+|..++.+. +|++|++++|.+..+|. .++.+++|+.|++++|... .+| .+..+++|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcc
Confidence 9999987 444 5787666655 89999999999998988 8999999999999988765 788 78888999
Q ss_pred ceeeccCccCCCCchhhhhcccc-ccEEEecCccccCCCcccccCCC--CcEEEcCCCCCCCCCCccc------cccccc
Q 041071 147 KTLNLSGCFKLENVPETLRQIES-LEKLDISGTAIRQPLSSIFLMKN--LKELSCRGCKGSPSSASWF------LRFPIN 217 (535)
Q Consensus 147 ~~L~Ls~c~~l~~lp~~l~~l~~-L~~L~L~~~~i~~~~~~i~~l~~--L~~L~L~~~~~~~~~~~~~------~~~~l~ 217 (535)
+.|++++|.. ..+|..+..+++ |+.|++++|.+..+|..+..++. |+.|++++|......+... ....++
T Consensus 598 ~~L~Ls~N~l-~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~ 676 (876)
T 4ecn_A 598 TDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676 (876)
T ss_dssp SEEECCSSCC-SCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred eEEECcCCcc-ccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence 9999998854 488888888888 99999999988888877666543 8888888777654322111 112344
Q ss_pred cccccCCCcccccCCcc-cCCCCCCEEecCCCCCCCCCCCCCCCCC--------CCCCEEeCCCCcCCCCChhhc--CCC
Q 041071 218 LMRWSSNPVALSFPSSL-SGLCSLTKLDISDCDLGEGAIPSSIGDL--------CSLEELHLSGNNFFTLPASIY--RLS 286 (535)
Q Consensus 218 ~l~l~~n~~~~~lp~~l-~~l~~L~~L~Ls~~~l~~~~lp~~l~~l--------~~L~~L~Ls~n~l~~lp~~i~--~l~ 286 (535)
.++++.|.+. .+|..+ ..+++|+.|+|++|.+. .+|..+... ++|+.|+|++|++..+|..+. .++
T Consensus 677 ~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~ 753 (876)
T 4ecn_A 677 TVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT--SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753 (876)
T ss_dssp EEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS--CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCT
T ss_pred EEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC--ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCC
Confidence 5555555554 233322 24444555555555443 233322221 144444444444444444443 444
Q ss_pred CCcEEeccCCc
Q 041071 287 SLLGIDLKECK 297 (535)
Q Consensus 287 ~L~~L~L~~c~ 297 (535)
+|+.|+|++|+
T Consensus 754 ~L~~L~Ls~N~ 764 (876)
T 4ecn_A 754 YLSNMDVSYNC 764 (876)
T ss_dssp TCCEEECCSSC
T ss_pred CcCEEEeCCCC
Confidence 44444444443
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=2.8e-30 Score=272.53 Aligned_cols=320 Identities=19% Similarity=0.151 Sum_probs=231.4
Q ss_pred CCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCc-cc-chhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEe
Q 041071 2 ESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIK-EL-PVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLV 79 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~-~l-~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~ 79 (535)
++|++|+|++|......|..++++++|++|++++|.+. .+ +..+..+++|++|++++|......|..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 57899999999776666888889999999999999886 55 45688999999999999887777788899999999999
Q ss_pred ccCCCCCccCccc--ccCCCCCceeecccccCccc-Ccc-ccCCCCCCEeccccCcCCCccCccccCC--CC--------
Q 041071 80 LSGCSKIVKFPET--VISVEDLSELFLDRTSITEV-PSS-IELLTKLQWLNLNDCRSLVRLPSSINGL--TS-------- 145 (535)
Q Consensus 80 Ls~c~~l~~~p~~--l~~l~~L~~L~L~~~~i~~l-p~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l--~~-------- 145 (535)
+++|...+..+.. +..+++|++|++++|.+..+ |.. ++.+++|++|++++|......+..+..+ .+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9998766555554 88899999999999999977 444 8899999999999988776666655543 34
Q ss_pred ------------------------CceeeccCccCCCCchhhhhcc---ccccEEEecCccccCCC-----------ccc
Q 041071 146 ------------------------LKTLNLSGCFKLENVPETLRQI---ESLEKLDISGTAIRQPL-----------SSI 187 (535)
Q Consensus 146 ------------------------L~~L~Ls~c~~l~~lp~~l~~l---~~L~~L~L~~~~i~~~~-----------~~i 187 (535)
|++|++++|......|..+... ++|+.|++++|...... ..+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 4444444443333333333322 34444444443222110 011
Q ss_pred c--cCCCCcEEEcCCCCCCCCCCcccc-ccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCC
Q 041071 188 F--LMKNLKELSCRGCKGSPSSASWFL-RFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCS 264 (535)
Q Consensus 188 ~--~l~~L~~L~L~~~~~~~~~~~~~~-~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~ 264 (535)
. ..++|+.|++++|......+..+. ...++.++++.|.+....|..+..+++|++|+|++|.+. +..|..+..+++
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~ 348 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDK 348 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGGTTCTT
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC-CcChhHhcCccc
Confidence 1 135788888888887655444333 345888999999998888888999999999999999884 345677888999
Q ss_pred CCEEeCCCCcCCCC-ChhhcCCCCCcEEeccCCcccccCCCCCCCcceEeccCcccccccccccccc
Q 041071 265 LEELHLSGNNFFTL-PASIYRLSSLLGIDLKECKMLQNLPRLPASIHWISLNGCVSLETLSDVLNLN 330 (535)
Q Consensus 265 L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~~~~C~sL~~l~~~~n~~ 330 (535)
|++|+|++|.+..+ |..+..+++|++|++++|+.. .+|. . .+.++++|+.+....|+.
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~---~----~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPD---G----IFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCT---T----TTTTCTTCCEEECCSSCB
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCccc-cCCH---h----HhccCCcccEEEccCCCc
Confidence 99999999999876 668889999999999998654 4442 1 123445555555554443
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=6.1e-30 Score=279.88 Aligned_cols=164 Identities=15% Similarity=0.111 Sum_probs=111.6
Q ss_pred hhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCC--ccccccccccccccCCCcccccCCcccCCC
Q 041071 161 PETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSA--SWFLRFPINLMRWSSNPVALSFPSSLSGLC 238 (535)
Q Consensus 161 p~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~--~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~ 238 (535)
|..+..+++|++|++++|.+..++..+..+++|+.|++++|......+ .......++.++++.|.+....|..+..++
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred hhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 455666666666666666666666666667777777777776544433 222234477777888887777777777888
Q ss_pred CCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCC-ChhhcCCCCCcEEeccCCcccccCCCC---CCCcceEec
Q 041071 239 SLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTL-PASIYRLSSLLGIDLKECKMLQNLPRL---PASIHWISL 314 (535)
Q Consensus 239 ~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~l---p~sL~~L~~ 314 (535)
+|++|++++|.+....+|..+..+++|+.|+|++|.+..+ |..+..+++|++|++++|+....+|.. .++|+.|++
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 8888888888775434677777888888888888887755 456777888888888888765544431 256777777
Q ss_pred cCccccccccc
Q 041071 315 NGCVSLETLSD 325 (535)
Q Consensus 315 ~~C~sL~~l~~ 325 (535)
++|. ++.++.
T Consensus 529 ~~N~-l~~~p~ 538 (606)
T 3vq2_A 529 SFNR-IETSKG 538 (606)
T ss_dssp TTSC-CCCEES
T ss_pred CCCc-CcccCH
Confidence 7764 555554
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=4.6e-29 Score=272.95 Aligned_cols=316 Identities=17% Similarity=0.087 Sum_probs=215.1
Q ss_pred CCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCccc-chhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEec
Q 041071 2 ESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKEL-PVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVL 80 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l-~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L 80 (535)
+++++|+|++|......|..++++++|++|++++|.+..+ |..++.+++|++|++++|......|..++++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 3578888888876666677778888888888888888766 556888888888888887766666777888888888888
Q ss_pred cCCCCCccCcccccCCCCCceeecccccCcccC-ccccCCCCCCEeccccCcCCCccCccccCCCCCc--eeeccCccCC
Q 041071 81 SGCSKIVKFPETVISVEDLSELFLDRTSITEVP-SSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLK--TLNLSGCFKL 157 (535)
Q Consensus 81 s~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~--~L~Ls~c~~l 157 (535)
++|......|..+..+++|++|++++|.+..++ +.+..+++|+.|++++|......|..+..+++|+ +|++++|...
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 887655544667788888888888888888653 3344488888888888766555556667777777 6777776433
Q ss_pred CCchhhhhc-------------------------------------------------cc--cccEEEecCccccCCCcc
Q 041071 158 ENVPETLRQ-------------------------------------------------IE--SLEKLDISGTAIRQPLSS 186 (535)
Q Consensus 158 ~~lp~~l~~-------------------------------------------------l~--~L~~L~L~~~~i~~~~~~ 186 (535)
...|..+.. +. +|+.|++++|.+..++..
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 322222111 11 566666666666655543
Q ss_pred -cccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCC
Q 041071 187 -IFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSL 265 (535)
Q Consensus 187 -i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L 265 (535)
+..+++|+.|++++|.....+........++.++++.|.+....|..+..+++|+.|++++|.+.....+..+..+++|
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 6667777777777776654433333334577777777777766666777777777777777776432223346777777
Q ss_pred CEEeCCCCcCCCC---ChhhcCCCCCcEEeccCCcccccCCCC---CCCcceEeccCc
Q 041071 266 EELHLSGNNFFTL---PASIYRLSSLLGIDLKECKMLQNLPRL---PASIHWISLNGC 317 (535)
Q Consensus 266 ~~L~Ls~n~l~~l---p~~i~~l~~L~~L~L~~c~~L~~lp~l---p~sL~~L~~~~C 317 (535)
++|++++|.+..+ |..+..+++|++|++++|+.....|.. .++|+.|++.+|
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 7777777777755 456677777777777777655444431 245566655554
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.1e-29 Score=272.01 Aligned_cols=110 Identities=23% Similarity=0.246 Sum_probs=61.4
Q ss_pred CCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccc-hhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEec
Q 041071 2 ESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELP-VSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVL 80 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~-~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L 80 (535)
++|++|+|++|......|+.++++++|++|++++|.+..++ ..++.+++|++|++++|......+..++++++|++|++
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 45666666666444333455556666666666666665554 34556666666666655432222223555666666666
Q ss_pred cCCCCCc-cCcccccCCCCCceeecccccCcc
Q 041071 81 SGCSKIV-KFPETVISVEDLSELFLDRTSITE 111 (535)
Q Consensus 81 s~c~~l~-~~p~~l~~l~~L~~L~L~~~~i~~ 111 (535)
++|.... .+|..++.+++|++|++++|.+..
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred CCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 6654433 356666666666666666655543
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=5.5e-29 Score=272.30 Aligned_cols=128 Identities=19% Similarity=0.094 Sum_probs=61.2
Q ss_pred CCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCccc-chhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEecc
Q 041071 3 SLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKEL-PVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLS 81 (535)
Q Consensus 3 ~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l-~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls 81 (535)
+|++|+|++|......+..++++++|++|++++|.+..+ |..++.+++|++|++++|......|..|+++++|++|+++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 112 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence 455555555544333333444555555555555555544 2234555555555555544333334445555555555555
Q ss_pred CCCCCccCcccccCCCCCceeecccccCc--ccCccccCCCCCCEeccccC
Q 041071 82 GCSKIVKFPETVISVEDLSELFLDRTSIT--EVPSSIELLTKLQWLNLNDC 130 (535)
Q Consensus 82 ~c~~l~~~p~~l~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c 130 (535)
+|......+..++.+++|++|++++|.+. .+|..++.+++|++|++++|
T Consensus 113 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp TSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred CCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 54433333344444555555555555444 23444444444444444444
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=2.4e-28 Score=267.19 Aligned_cols=315 Identities=17% Similarity=0.144 Sum_probs=214.5
Q ss_pred CCCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCccc-chhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEe
Q 041071 1 MESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKEL-PVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLV 79 (535)
Q Consensus 1 L~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l-~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~ 79 (535)
+++|++|+|++|......|+.++++++|++|++++|.+..+ |..++.+++|++|++++|......|..++++++|++|+
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ 135 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEE
T ss_pred CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEE
Confidence 46788888888877666678888888888888888888765 55778888888888888765554455677788888888
Q ss_pred ccCCCCCccCcccccCCCCCceeecccccCcccC-ccccCCCCCC--EeccccCc-------------------------
Q 041071 80 LSGCSKIVKFPETVISVEDLSELFLDRTSITEVP-SSIELLTKLQ--WLNLNDCR------------------------- 131 (535)
Q Consensus 80 Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~--~L~L~~c~------------------------- 131 (535)
+++|.....-...+..+++|++|++++|.+..++ ..++.+++|+ .|++++|.
T Consensus 136 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~ 215 (606)
T 3t6q_A 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL 215 (606)
T ss_dssp CCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCH
T ss_pred CCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhH
Confidence 8876654422222333777777777777666553 3355555555 44444433
Q ss_pred --------------------------------------------------CCCccCccccCCCCCceeeccCccCCCCch
Q 041071 132 --------------------------------------------------SLVRLPSSINGLTSLKTLNLSGCFKLENVP 161 (535)
Q Consensus 132 --------------------------------------------------~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp 161 (535)
.....+..+..+++|++|++++| .+..+|
T Consensus 216 ~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp 294 (606)
T 3t6q_A 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELP 294 (606)
T ss_dssp HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCC
T ss_pred HHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCC
Confidence 22222333667788888888888 456788
Q ss_pred hhhhccccccEEEecCccccCC-CcccccCCCCcEEEcCCCCCCCCCCc--cccccccccccccCCCccccc--CCcccC
Q 041071 162 ETLRQIESLEKLDISGTAIRQP-LSSIFLMKNLKELSCRGCKGSPSSAS--WFLRFPINLMRWSSNPVALSF--PSSLSG 236 (535)
Q Consensus 162 ~~l~~l~~L~~L~L~~~~i~~~-~~~i~~l~~L~~L~L~~~~~~~~~~~--~~~~~~l~~l~l~~n~~~~~l--p~~l~~ 236 (535)
..+..+++|++|++++|.+..+ +..+..+++|+.|++++|......+. ......++.++++.|.+.... +..+..
T Consensus 295 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 374 (606)
T 3t6q_A 295 SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374 (606)
T ss_dssp SSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTT
T ss_pred hhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhccc
Confidence 8888888888888888888865 45777888888888888875532221 222344777777777776654 566777
Q ss_pred CCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCC--hhhcCCCCCcEEeccCCcccccCCCC---CCCcce
Q 041071 237 LCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLP--ASIYRLSSLLGIDLKECKMLQNLPRL---PASIHW 311 (535)
Q Consensus 237 l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~~L~~lp~l---p~sL~~ 311 (535)
+++|++|++++|.+. +..|..+..+++|+.|++++|.+...+ ..+..+++|++|++++|......|.. .++|+.
T Consensus 375 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 453 (606)
T 3t6q_A 375 LSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453 (606)
T ss_dssp CTTCCEEECCSCSCE-EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCcCC-cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCE
Confidence 777888888777763 345666777777777777777776442 23667777777777777765544432 356666
Q ss_pred EeccCc
Q 041071 312 ISLNGC 317 (535)
Q Consensus 312 L~~~~C 317 (535)
|++.+|
T Consensus 454 L~L~~n 459 (606)
T 3t6q_A 454 LNLQGN 459 (606)
T ss_dssp EECTTC
T ss_pred EECCCC
Confidence 666665
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=9.7e-29 Score=255.79 Aligned_cols=282 Identities=18% Similarity=0.189 Sum_probs=179.4
Q ss_pred CCCcEEecCCCcCCCCCC-cccCCCCcCcEEEeeccCCcccch-hhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEe
Q 041071 2 ESLKTLVLSGCSKLKKFP-DIVGGMECLQELRVDGTDIKELPV-SIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLV 79 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp-~~~~~~~~L~~L~L~~~~l~~l~~-~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~ 79 (535)
+++++|+++++. ++.+| ..+..+++|++|+++++.+..++. .+..+++|++|++++|......|..++++++|++|+
T Consensus 45 ~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 456666666654 33333 344566666666666666665543 556666666666666654444445556666666666
Q ss_pred ccCCCCCccCccc-ccCCCCCceeecccccCcccCc-cccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCC
Q 041071 80 LSGCSKIVKFPET-VISVEDLSELFLDRTSITEVPS-SIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKL 157 (535)
Q Consensus 80 Ls~c~~l~~~p~~-l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l 157 (535)
+++|. +..+|.. +..+++|++|++++|.+..++. .++.+++|+.|++++|.... ++ +..+++|+.|++++|. +
T Consensus 124 L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~--~~~l~~L~~L~l~~n~-l 198 (390)
T 3o6n_A 124 LERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNL-L 198 (390)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC--GGGCTTCSEEECCSSC-C
T ss_pred CCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc--cccccccceeeccccc-c
Confidence 66653 3344433 4566666666666666665533 46666666666666654332 21 3445666666666652 2
Q ss_pred CCchhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCC
Q 041071 158 ENVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGL 237 (535)
Q Consensus 158 ~~lp~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l 237 (535)
.. +....+|+.|++++|.+..++... .++|+.|++++|..... +.......++.+++++|.+....|..+..+
T Consensus 199 ~~----~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (390)
T 3o6n_A 199 ST----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271 (390)
T ss_dssp SE----EECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred cc----cCCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence 22 223356777777777776554432 46788888888776543 222233447778888888877777778888
Q ss_pred CCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChhhcCCCCCcEEeccCCcc
Q 041071 238 CSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLKECKM 298 (535)
Q Consensus 238 ~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 298 (535)
++|+.|+|++|.+.. +|..+..+++|+.|+|++|.+..+|..+..+++|++|++++|+.
T Consensus 272 ~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 272 QRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp SSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred ccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcc
Confidence 888888888887754 66666777888888888888888887777788888888888764
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.8e-29 Score=269.65 Aligned_cols=309 Identities=17% Similarity=0.107 Sum_probs=181.6
Q ss_pred CCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCccc-chhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEec
Q 041071 2 ESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKEL-PVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVL 80 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l-~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L 80 (535)
++|++|+|++|......|+.++++++|++|++++|.+..+ |..++.+++|++|++++|. +..+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc--ccCCccEEec
Confidence 4577777777765544456666777777777777777766 4567777777777777764 3456654 5777777777
Q ss_pred cCCCCCc-cCcccccCCCCCceeecccccCcccCccccCCCCC--CEeccccCcC--CCccCccccC-------------
Q 041071 81 SGCSKIV-KFPETVISVEDLSELFLDRTSITEVPSSIELLTKL--QWLNLNDCRS--LVRLPSSING------------- 142 (535)
Q Consensus 81 s~c~~l~-~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L--~~L~L~~c~~--l~~lp~~i~~------------- 142 (535)
++|.... .+|..++.+++|++|++++|.+.. ..++.+++| +.|++++|.. ....|..+..
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 175 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence 7766554 356777777777777777777765 345556666 7777776655 3333433332
Q ss_pred -------------CCCCceeeccCccC-------CCCchhhhhc---------------------------cccccEEEe
Q 041071 143 -------------LTSLKTLNLSGCFK-------LENVPETLRQ---------------------------IESLEKLDI 175 (535)
Q Consensus 143 -------------l~~L~~L~Ls~c~~-------l~~lp~~l~~---------------------------l~~L~~L~L 175 (535)
+++|+.|++++|.. .+.+| .++. .++|++|++
T Consensus 176 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l 254 (520)
T 2z7x_B 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254 (520)
T ss_dssp SCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred cchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence 34444444444320 00000 1111 235666666
Q ss_pred cCcccc-CCCccc-----ccCCCCcEEEcCCCCC--------------------------CCCCCccccccccccccccC
Q 041071 176 SGTAIR-QPLSSI-----FLMKNLKELSCRGCKG--------------------------SPSSASWFLRFPINLMRWSS 223 (535)
Q Consensus 176 ~~~~i~-~~~~~i-----~~l~~L~~L~L~~~~~--------------------------~~~~~~~~~~~~l~~l~l~~ 223 (535)
++|.+. .+|..+ ..+++|+.++++++.. .... .......++.+++++
T Consensus 255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML-CPSKISPFLHLDFSN 333 (520)
T ss_dssp EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEEECCS
T ss_pred ecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc-chhhCCcccEEEeEC
Confidence 666666 556555 5555555555555444 2111 001223356666666
Q ss_pred CCcccccCCcccCCCCCCEEecCCCCCCC-CCCCCCCCCCCCCCEEeCCCCcCCC-CChh-hcCCCCCcEEeccCCcccc
Q 041071 224 NPVALSFPSSLSGLCSLTKLDISDCDLGE-GAIPSSIGDLCSLEELHLSGNNFFT-LPAS-IYRLSSLLGIDLKECKMLQ 300 (535)
Q Consensus 224 n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~-~~lp~~l~~l~~L~~L~Ls~n~l~~-lp~~-i~~l~~L~~L~L~~c~~L~ 300 (535)
|.+.+..|..+..+++|++|++++|.+.. ..+|..+..+++|+.|++++|.+.. +|.. +..+++|++|++++|+..+
T Consensus 334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413 (520)
T ss_dssp SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence 66666666666666667777777666642 0233455666667777777766665 6653 5556666666666666554
Q ss_pred cCCC-CCCCcceEeccCc
Q 041071 301 NLPR-LPASIHWISLNGC 317 (535)
Q Consensus 301 ~lp~-lp~sL~~L~~~~C 317 (535)
.+|. ++++|+.|++++|
T Consensus 414 ~~~~~l~~~L~~L~Ls~N 431 (520)
T 2z7x_B 414 TIFRCLPPRIKVLDLHSN 431 (520)
T ss_dssp GGGGSCCTTCCEEECCSS
T ss_pred chhhhhcccCCEEECCCC
Confidence 4443 3456666666655
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=3.3e-29 Score=270.77 Aligned_cols=312 Identities=17% Similarity=0.162 Sum_probs=218.5
Q ss_pred CCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccc-hhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEec
Q 041071 2 ESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELP-VSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVL 80 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~-~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L 80 (535)
++|++|+|++|......|..++++++|++|++++|.+..++ ..++.+++|++|++++|......|..++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 47899999998766666777889999999999999988776 56888999999999988765555555888999999999
Q ss_pred cCCCCCc-cCcccccCCCCCceeeccccc-CcccC-ccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCC
Q 041071 81 SGCSKIV-KFPETVISVEDLSELFLDRTS-ITEVP-SSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKL 157 (535)
Q Consensus 81 s~c~~l~-~~p~~l~~l~~L~~L~L~~~~-i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l 157 (535)
++|.... ..|..+..+++|++|++++|. +..+| ..++.+++|++|++++|......|..+..+++|++|++++|. .
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~ 184 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-S 184 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-S
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc-c
Confidence 9876554 456788889999999999987 66776 478889999999999988777788888888888888888774 3
Q ss_pred CCchhhh-hccccccEEEecCccccCCC---cc-----------------------------cccCCC------------
Q 041071 158 ENVPETL-RQIESLEKLDISGTAIRQPL---SS-----------------------------IFLMKN------------ 192 (535)
Q Consensus 158 ~~lp~~l-~~l~~L~~L~L~~~~i~~~~---~~-----------------------------i~~l~~------------ 192 (535)
..+|..+ +.+++|+.|++++|.+...+ .. +..+++
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 4555543 45778888888887776531 00 111222
Q ss_pred -----------------------------------------------CcEEEcCCCCCCCCCCccc-cccccccccccCC
Q 041071 193 -----------------------------------------------LKELSCRGCKGSPSSASWF-LRFPINLMRWSSN 224 (535)
Q Consensus 193 -----------------------------------------------L~~L~L~~~~~~~~~~~~~-~~~~l~~l~l~~n 224 (535)
|+.|++++|.....+...+ ....++.+++++|
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCC
Confidence 3333333332221111111 1234666777777
Q ss_pred CcccccC---CcccCCCCCCEEecCCCCCCCCCCC---CCCCCCCCCCEEeCCCCcCCCCChhhcCCCCCcEEeccCCcc
Q 041071 225 PVALSFP---SSLSGLCSLTKLDISDCDLGEGAIP---SSIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLKECKM 298 (535)
Q Consensus 225 ~~~~~lp---~~l~~l~~L~~L~Ls~~~l~~~~lp---~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 298 (535)
.+.+..| ..+..+++|+.|+|++|.+.. ++ ..+..+++|+.|++++|++..+|..+..+++|++|++++|+
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~- 421 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG- 421 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCC--HHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSC-
T ss_pred ccccccccchhhhhccccCcEEEccCCcccc--cccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCC-
Confidence 7766543 335667777777777777643 22 23566777777777777777777777777777777777776
Q ss_pred cccCCC-CCCCcceEeccCc
Q 041071 299 LQNLPR-LPASIHWISLNGC 317 (535)
Q Consensus 299 L~~lp~-lp~sL~~L~~~~C 317 (535)
++.+|. +|++|+.|++++|
T Consensus 422 l~~l~~~~~~~L~~L~Ls~N 441 (549)
T 2z81_A 422 IRVVKTCIPQTLEVLDVSNN 441 (549)
T ss_dssp CSCCCTTSCTTCSEEECCSS
T ss_pred cccccchhcCCceEEECCCC
Confidence 344543 5567777777665
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=1.6e-28 Score=259.08 Aligned_cols=315 Identities=18% Similarity=0.142 Sum_probs=247.5
Q ss_pred cEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCccc-chhhhcCCCccEEeccCCCCCCcc-CcccCCCCCCCEEeccC
Q 041071 5 KTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKEL-PVSIELMSGLVSLNLKDCRNLTTL-PITIGNLECLQTLVLSG 82 (535)
Q Consensus 5 ~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l-~~~i~~l~~L~~L~Ls~~~~l~~l-p~~l~~l~~L~~L~Ls~ 82 (535)
+.++.+++ .++.+|. + .++|++|+|++|.+..+ |..++.+++|++|++++|.....+ |..|.++++|++|+|++
T Consensus 13 ~~~~c~~~-~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINR-GLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSS-CCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCC-CcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 35666665 4677887 3 48999999999999987 667999999999999998876555 56689999999999999
Q ss_pred CCCCccCcccccCCCCCceeecccccCcc-cCcc--ccCCCCCCEeccccCcCCCccCcc-ccCCCCCceeeccCccCCC
Q 041071 83 CSKIVKFPETVISVEDLSELFLDRTSITE-VPSS--IELLTKLQWLNLNDCRSLVRLPSS-INGLTSLKTLNLSGCFKLE 158 (535)
Q Consensus 83 c~~l~~~p~~l~~l~~L~~L~L~~~~i~~-lp~~--i~~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~Ls~c~~l~ 158 (535)
|......|..+..+++|++|++++|.+.. ++.. ++.+++|++|++++|......|.. +.++++|++|++++|....
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 98777779999999999999999999985 4444 899999999999999877776765 7889999999999997767
Q ss_pred Cchhhhhcc--ccccEEEecCccccCCCcc---------cccCCCCcEEEcCCCCCCCCCCc------------------
Q 041071 159 NVPETLRQI--ESLEKLDISGTAIRQPLSS---------IFLMKNLKELSCRGCKGSPSSAS------------------ 209 (535)
Q Consensus 159 ~lp~~l~~l--~~L~~L~L~~~~i~~~~~~---------i~~l~~L~~L~L~~~~~~~~~~~------------------ 209 (535)
..+..+..+ .+|+.|++++|.+..++.. +..+++|+.|++++|......+.
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 667766665 5666666666666644322 22345566666666543211100
Q ss_pred -------------------cc---cccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCE
Q 041071 210 -------------------WF---LRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEE 267 (535)
Q Consensus 210 -------------------~~---~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~ 267 (535)
.+ ....++.++++.|.+....|..+..+++|++|+|++|.+. +..|..+..+++|+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLK 327 (455)
T ss_dssp CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCE
T ss_pred ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc-ccChhHhcCcccCCE
Confidence 00 1134778899999999999999999999999999999995 455778999999999
Q ss_pred EeCCCCcCCCC-ChhhcCCCCCcEEeccCCcccccCCC---CCCCcceEeccCccccccccc
Q 041071 268 LHLSGNNFFTL-PASIYRLSSLLGIDLKECKMLQNLPR---LPASIHWISLNGCVSLETLSD 325 (535)
Q Consensus 268 L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~---lp~sL~~L~~~~C~sL~~l~~ 325 (535)
|+|++|.+..+ |..+..+++|++|++++|+.....|. -.++|+.|++.++ .++.++.
T Consensus 328 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 388 (455)
T 3v47_A 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPD 388 (455)
T ss_dssp EECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred EECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCH
Confidence 99999999977 56788999999999999987655554 2367888888886 4555553
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=261.45 Aligned_cols=314 Identities=18% Similarity=0.155 Sum_probs=251.8
Q ss_pred cEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccc-hhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCC
Q 041071 5 KTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELP-VSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGC 83 (535)
Q Consensus 5 ~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~-~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c 83 (535)
+.++.++. .+..+|..+ .++|++|+|++|.+..++ ..+..+++|++|+|++|......|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~-~l~~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRK-RFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSC-CCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCC-CcCcCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 46777765 466788765 579999999999999885 57899999999999998766666888999999999999997
Q ss_pred CCCccCcccccCCCCCceeecccccCccc-CccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchh
Q 041071 84 SKIVKFPETVISVEDLSELFLDRTSITEV-PSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPE 162 (535)
Q Consensus 84 ~~l~~~p~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~ 162 (535)
......+..+..+++|++|++++|.+..+ +..+..+++|+.|++++|......+..+..+++|++|++++|......+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 64443445678999999999999999966 55789999999999999887777777889999999999999965555556
Q ss_pred hhhccccccEEEecCccccCCCc-ccccCCCCcEEEcCCCCCCCCCCcc-ccccccccccccCCCcccccCCcccCCCCC
Q 041071 163 TLRQIESLEKLDISGTAIRQPLS-SIFLMKNLKELSCRGCKGSPSSASW-FLRFPINLMRWSSNPVALSFPSSLSGLCSL 240 (535)
Q Consensus 163 ~l~~l~~L~~L~L~~~~i~~~~~-~i~~l~~L~~L~L~~~~~~~~~~~~-~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L 240 (535)
.+..+++|+.|++++|.+..++. .+..+++|+.|++++|......+.. +....++.+++++|.+....+..+..+++|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 78999999999999999986654 6788999999999998866543322 233468899999999886544578899999
Q ss_pred CEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCC-ChhhcCCCCCcEEeccCCcccccCCCCCCCcceEeccCccc
Q 041071 241 TKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTL-PASIYRLSSLLGIDLKECKMLQNLPRLPASIHWISLNGCVS 319 (535)
Q Consensus 241 ~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~~~~C~s 319 (535)
+.|+|++|.+. +..+..+..+++|+.|+|++|.+..+ |..+..+++|++|+|++|+. +.+|. . .+.+|++
T Consensus 251 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~---~----~~~~l~~ 321 (477)
T 2id5_A 251 RFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL-TTLEE---S----VFHSVGN 321 (477)
T ss_dssp CEEECCSSCCC-EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC-SCCCG---G----GBSCGGG
T ss_pred CeeECCCCcCC-ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcC-ceeCH---h----HcCCCcc
Confidence 99999999985 34456788999999999999999976 66888999999999999964 44442 1 2345667
Q ss_pred ccccccccccc
Q 041071 320 LETLSDVLNLN 330 (535)
Q Consensus 320 L~~l~~~~n~~ 330 (535)
|+.|....|+.
T Consensus 322 L~~L~l~~N~l 332 (477)
T 2id5_A 322 LETLILDSNPL 332 (477)
T ss_dssp CCEEECCSSCE
T ss_pred cCEEEccCCCc
Confidence 77766665553
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=9.4e-28 Score=244.14 Aligned_cols=281 Identities=20% Similarity=0.267 Sum_probs=208.1
Q ss_pred CCCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEec
Q 041071 1 MESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVL 80 (535)
Q Consensus 1 L~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L 80 (535)
+++|+.|+++++. +..++. ++.+++|++|++++|.+..++. +..+++|++|++++|. +..+| .+..+++|++|++
T Consensus 43 l~~L~~L~l~~~~-i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 43 LESITKLVVAGEK-VASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HTTCSEEECCSSC-CCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEEC
T ss_pred cccccEEEEeCCc-cccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEEC
Confidence 3678888888875 445555 5578888888888888888876 7888888888888875 44455 4778888888888
Q ss_pred cCCCCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCc
Q 041071 81 SGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENV 160 (535)
Q Consensus 81 s~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l 160 (535)
++|. +..++. +..+++|++|++++|.....+..+..+++|++|++++|.... ++. +..+++|++|++++|. +..+
T Consensus 118 ~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~-l~~~ 192 (347)
T 4fmz_A 118 NEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYNQ-IEDI 192 (347)
T ss_dssp TTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTTSC-CCCC
T ss_pred cCCc-ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccCCc-cccc
Confidence 8865 444554 778888888888888655555558888888888888876443 333 6778888888888884 4455
Q ss_pred hhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCC
Q 041071 161 PETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSL 240 (535)
Q Consensus 161 p~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L 240 (535)
+. +..+++|+.|++++|.+...+. +..+++|+.|++++|......+ ......++.+++++|.+... ..+..+++|
T Consensus 193 ~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L 267 (347)
T 4fmz_A 193 SP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKL 267 (347)
T ss_dssp GG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred cc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCCc
Confidence 54 7788888888888888887665 7788888888888887665443 33334577778887777653 347777888
Q ss_pred CEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCC-ChhhcCCCCCcEEeccCCccc
Q 041071 241 TKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTL-PASIYRLSSLLGIDLKECKML 299 (535)
Q Consensus 241 ~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L 299 (535)
+.|++++|.+.+ + ..+..+++|+.|++++|.+... |..+..+++|++|++++|+..
T Consensus 268 ~~L~l~~n~l~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 268 KMLNVGSNQISD--I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp CEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred CEEEccCCccCC--C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 888888887754 3 3467778888888888887744 456777888888888888743
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=3.7e-28 Score=275.79 Aligned_cols=295 Identities=17% Similarity=0.138 Sum_probs=197.5
Q ss_pred CCCcEEecCCCcCCCCCCcccCCCCcCcEEEeecc-CCccc-chhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEe
Q 041071 2 ESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGT-DIKEL-PVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLV 79 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~-~l~~l-~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~ 79 (535)
++|++|+|++|......|..+.++++|++|+|++| .+..+ |..++++++|++|+|++|......|..|+++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 57888999988766666778888999999999887 45566 56788889999999988877666788888899999999
Q ss_pred ccCCCCCccCccc--ccCCCCCceeecccccCcccC--ccccCCCCCCEeccccCcCCCccCccccCC--CCCceeeccC
Q 041071 80 LSGCSKIVKFPET--VISVEDLSELFLDRTSITEVP--SSIELLTKLQWLNLNDCRSLVRLPSSINGL--TSLKTLNLSG 153 (535)
Q Consensus 80 Ls~c~~l~~~p~~--l~~l~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l--~~L~~L~Ls~ 153 (535)
|++|......|.. +..+++|++|++++|.+..++ ..++++++|++|++++|......+..+..+ ++|+.|++++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 9888766656654 788889999999998888653 468888899999888887666666655555 6666677666
Q ss_pred ccCCCCchhhhhcccc------ccEEEecCccccC-CCccc------------------------------------cc-
Q 041071 154 CFKLENVPETLRQIES------LEKLDISGTAIRQ-PLSSI------------------------------------FL- 189 (535)
Q Consensus 154 c~~l~~lp~~l~~l~~------L~~L~L~~~~i~~-~~~~i------------------------------------~~- 189 (535)
|......|..++.+.+ |+.|++++|.+.. .+..+ ..
T Consensus 184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l 263 (844)
T 3j0a_A 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263 (844)
T ss_dssp SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence 6555555444444433 6666666664431 11111 01
Q ss_pred -CCCCcEEEcCCCCCCCCCCcccc-ccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCE
Q 041071 190 -MKNLKELSCRGCKGSPSSASWFL-RFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEE 267 (535)
Q Consensus 190 -l~~L~~L~L~~~~~~~~~~~~~~-~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~ 267 (535)
.++|+.|++++|......+..+. ...++.++++.|.+....|..+..+++|++|+|++|.+. +..|..+..+++|+.
T Consensus 264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS-CCCSCSCSSCTTCCE
T ss_pred ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC-ccCHHHhcCCCCCCE
Confidence 14566666666654433322222 233566666666666666666666666666666666663 334556666666666
Q ss_pred EeCCCCcCCCCCh-hhcCCCCCcEEeccCCc
Q 041071 268 LHLSGNNFFTLPA-SIYRLSSLLGIDLKECK 297 (535)
Q Consensus 268 L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~ 297 (535)
|++++|.+..++. .+..+++|++|++++|.
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 6666666665553 35556666666666664
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=2.3e-28 Score=267.06 Aligned_cols=302 Identities=17% Similarity=0.142 Sum_probs=213.5
Q ss_pred CCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccch-hhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEec
Q 041071 2 ESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPV-SIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVL 80 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~-~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L 80 (535)
.+++.|+++++......+..++.+++|++|+|++|.+..++. .++.+++|++|+|++|......|..|+++++|++|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 567777777765433334556677777777777777776654 6777777777777777655555555677777777777
Q ss_pred cCCCCCccCcc-cccCCCCCceeecccccCcccCc-cccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCC
Q 041071 81 SGCSKIVKFPE-TVISVEDLSELFLDRTSITEVPS-SIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLE 158 (535)
Q Consensus 81 s~c~~l~~~p~-~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~ 158 (535)
++|... .+|. .+..+++|++|++++|.+..+++ .++.+++|+.|++++|.... ++ +..+++|+.|++++|. +.
T Consensus 131 ~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~--~~~l~~L~~L~l~~n~-l~ 205 (597)
T 3oja_B 131 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNL-LS 205 (597)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC--GGGCTTCSEEECCSSC-CS
T ss_pred eCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC--hhhhhhhhhhhcccCc-cc
Confidence 776443 4443 35777777777777777776544 57777777777777765433 32 4456777777777763 22
Q ss_pred CchhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCC
Q 041071 159 NVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLC 238 (535)
Q Consensus 159 ~lp~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~ 238 (535)
. +....+|+.|++++|.+..++..+ .++|+.|++++|..... +.......++.+++++|.+.+..|..+..++
T Consensus 206 ~----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 278 (597)
T 3oja_B 206 T----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278 (597)
T ss_dssp E----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred c----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence 2 234457888888888877665443 36889999998887653 2333344588889999999888888899999
Q ss_pred CCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChhhcCCCCCcEEeccCCcccccCCCCCCCcceEeccCc
Q 041071 239 SLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLKECKMLQNLPRLPASIHWISLNGC 317 (535)
Q Consensus 239 ~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~~~~C 317 (535)
+|+.|+|++|.+.. +|..+..+++|+.|+|++|.+..+|..+..+++|++|+|++|+....-....++|+.|++.++
T Consensus 279 ~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 279 RLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHN 355 (597)
T ss_dssp SCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSS
T ss_pred CCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCC
Confidence 99999999998865 777778889999999999999999988888999999999998754322222344555555443
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1.9e-28 Score=264.71 Aligned_cols=278 Identities=19% Similarity=0.160 Sum_probs=177.0
Q ss_pred CCCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchh-hhcCCCccEEeccCCCCCC-ccCcccCCCCCCCEE
Q 041071 1 MESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVS-IELMSGLVSLNLKDCRNLT-TLPITIGNLECLQTL 78 (535)
Q Consensus 1 L~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~-i~~l~~L~~L~Ls~~~~l~-~lp~~l~~l~~L~~L 78 (535)
+++|++|+|++|......|+.++.+++|++|++++|.+..++.. ++.+++|++|++++|.... ..|..++++++|++|
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 57899999999987766778888999999999999999988765 8999999999999987554 456778899999999
Q ss_pred eccCCCCCccCc-ccccCCCCCceeecccccCcc-cCccccCCCCCCEeccccCcCCCccCcc-ccCCCCCceeeccCcc
Q 041071 79 VLSGCSKIVKFP-ETVISVEDLSELFLDRTSITE-VPSSIELLTKLQWLNLNDCRSLVRLPSS-INGLTSLKTLNLSGCF 155 (535)
Q Consensus 79 ~Ls~c~~l~~~p-~~l~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~Ls~c~ 155 (535)
++++|..++.+| ..+..+++|++|++++|.+.. +|..++.+++|+.|++.+|... .+|.. +..+++|++|++++|.
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCB
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCc
Confidence 999988677665 578889999999999998885 5666665555555444443321 11111 1112222222222221
Q ss_pred CCC-----------------------------------------------------------------------------
Q 041071 156 KLE----------------------------------------------------------------------------- 158 (535)
Q Consensus 156 ~l~----------------------------------------------------------------------------- 158 (535)
..+
T Consensus 208 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 287 (549)
T 2z81_A 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287 (549)
T ss_dssp CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEE
T ss_pred cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccc
Confidence 110
Q ss_pred -------------CchhhhhccccccEEEecCccccCCCccc-ccCCCCcEEEcCCCCCCCCCC---c-ccccccccccc
Q 041071 159 -------------NVPETLRQIESLEKLDISGTAIRQPLSSI-FLMKNLKELSCRGCKGSPSSA---S-WFLRFPINLMR 220 (535)
Q Consensus 159 -------------~lp~~l~~l~~L~~L~L~~~~i~~~~~~i-~~l~~L~~L~L~~~~~~~~~~---~-~~~~~~l~~l~ 220 (535)
.++.......+|+.|++++|.+..+|..+ ..+++|+.|++++|......+ . ......++.++
T Consensus 288 l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~ 367 (549)
T 2z81_A 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367 (549)
T ss_dssp EESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEE
T ss_pred ccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEE
Confidence 00011122244556666666666566555 356777777777766543211 0 11123466666
Q ss_pred ccCCCcccccC--CcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChh
Q 041071 221 WSSNPVALSFP--SSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPAS 281 (535)
Q Consensus 221 l~~n~~~~~lp--~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~ 281 (535)
+++|.+....+ ..+..+++|++|++++|.+.. +|..+..+++|++|++++|.+..+|..
T Consensus 368 Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~~~~L~~L~Ls~N~l~~l~~~ 428 (549)
T 2z81_A 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP--MPDSCQWPEKMRFLNLSSTGIRVVKTC 428 (549)
T ss_dssp CTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC--CCSCCCCCTTCCEEECTTSCCSCCCTT
T ss_pred ccCCcccccccchhhhhcCCCCCEEECCCCCCcc--CChhhcccccccEEECCCCCcccccch
Confidence 66666654321 335566667777777776653 666666666666666666666655543
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.2e-28 Score=262.71 Aligned_cols=312 Identities=17% Similarity=0.155 Sum_probs=239.5
Q ss_pred CCCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCC-ccCcccCCCCCCCEEe
Q 041071 1 MESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLT-TLPITIGNLECLQTLV 79 (535)
Q Consensus 1 L~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~-~lp~~l~~l~~L~~L~ 79 (535)
+++|++|+|++|...+..|+.++++++|++|++++|.+..+|.. .+++|++|++++|.... .+|..++++++|++|+
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~ 121 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLG 121 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEE
T ss_pred cccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEE
Confidence 57899999999987666688899999999999999999999887 89999999999988665 5788899999999999
Q ss_pred ccCCCCCccCcccccCCCCC--ceeecccccC--c-ccCccccC--------------------------C---------
Q 041071 80 LSGCSKIVKFPETVISVEDL--SELFLDRTSI--T-EVPSSIEL--------------------------L--------- 119 (535)
Q Consensus 80 Ls~c~~l~~~p~~l~~l~~L--~~L~L~~~~i--~-~lp~~i~~--------------------------l--------- 119 (535)
+++|.... ..+..+++| ++|++++|.+ . ..|..+.. +
T Consensus 122 L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 198 (520)
T 2z7x_B 122 LSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198 (520)
T ss_dssp EEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEE
T ss_pred ecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccc
Confidence 99976543 345566666 8888888776 2 23333322 1
Q ss_pred ------------------------------------------------CCCCEeccccCcCCCccCccc-----cCCCCC
Q 041071 120 ------------------------------------------------TKLQWLNLNDCRSLVRLPSSI-----NGLTSL 146 (535)
Q Consensus 120 ------------------------------------------------~~L~~L~L~~c~~l~~lp~~i-----~~l~~L 146 (535)
++|++|++++|...+.+|..+ ..+++|
T Consensus 199 ~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L 278 (520)
T 2z7x_B 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL 278 (520)
T ss_dssp ECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEE
T ss_pred ccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCcee
Confidence 256666666665555677766 667777
Q ss_pred ceeeccCccCCCCch-hhh-------------------------hccccccEEEecCccccC-CCcccccCCCCcEEEcC
Q 041071 147 KTLNLSGCFKLENVP-ETL-------------------------RQIESLEKLDISGTAIRQ-PLSSIFLMKNLKELSCR 199 (535)
Q Consensus 147 ~~L~Ls~c~~l~~lp-~~l-------------------------~~l~~L~~L~L~~~~i~~-~~~~i~~l~~L~~L~L~ 199 (535)
+.+++++|.. .+| ..+ ..+++|++|++++|.+.+ .|..+..+++|+.|+++
T Consensus 279 ~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 356 (520)
T 2z7x_B 279 SIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356 (520)
T ss_dssp EEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECC
T ss_pred Eeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEcc
Confidence 7777766643 444 111 577899999999999996 77888999999999999
Q ss_pred CCCCCCCC--Cc-cccccccccccccCCCcccccCC-cccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcC
Q 041071 200 GCKGSPSS--AS-WFLRFPINLMRWSSNPVALSFPS-SLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNF 275 (535)
Q Consensus 200 ~~~~~~~~--~~-~~~~~~l~~l~l~~n~~~~~lp~-~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l 275 (535)
+|...... +. ......++.+++++|.+...+|. .+..+++|+.|++++|.+. +.+|..+. ++|+.|+|++|++
T Consensus 357 ~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~--~~L~~L~Ls~N~l 433 (520)
T 2z7x_B 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT-DTIFRCLP--PRIKVLDLHSNKI 433 (520)
T ss_dssp SSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC-GGGGGSCC--TTCCEEECCSSCC
T ss_pred CCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC-cchhhhhc--ccCCEEECCCCcc
Confidence 99876421 11 22334588999999999986665 4788999999999999985 34454443 7999999999999
Q ss_pred CCCChhhcCCCCCcEEeccCCcccccCCCCCCCcceEeccCcccccccccccccc
Q 041071 276 FTLPASIYRLSSLLGIDLKECKMLQNLPRLPASIHWISLNGCVSLETLSDVLNLN 330 (535)
Q Consensus 276 ~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~~~~C~sL~~l~~~~n~~ 330 (535)
..+|..+..+++|++|++++|+. +.+|.- .+.++++|+.+....|+.
T Consensus 434 ~~ip~~~~~l~~L~~L~L~~N~l-~~l~~~-------~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 434 KSIPKQVVKLEALQELNVASNQL-KSVPDG-------IFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCC-CCCCTT-------TTTTCTTCCEEECCSSCB
T ss_pred cccchhhhcCCCCCEEECCCCcC-CccCHH-------HhccCCcccEEECcCCCC
Confidence 99999999999999999999964 456642 234566777776666553
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=1.1e-27 Score=243.70 Aligned_cols=281 Identities=20% Similarity=0.254 Sum_probs=238.5
Q ss_pred CCCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEec
Q 041071 1 MESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVL 80 (535)
Q Consensus 1 L~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L 80 (535)
+++|++|++++|. +..++. +..+++|++|++++|.+..++ .+..+++|++|++++|. +..++. +..+++|++|++
T Consensus 65 ~~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l 139 (347)
T 4fmz_A 65 LTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNL 139 (347)
T ss_dssp CTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEEC
T ss_pred cCCccEEEccCCc-cccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEEC
Confidence 5789999999995 455655 779999999999999999986 58999999999999976 445555 888999999999
Q ss_pred cCCCCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCc
Q 041071 81 SGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENV 160 (535)
Q Consensus 81 s~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l 160 (535)
++|.....++. +..+++|++|++++|.+..++. ++.+++|+.|++++|.. ..++. +..+++|+.|++++|.. ..+
T Consensus 140 ~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~~n~l-~~~ 214 (347)
T 4fmz_A 140 GANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI-EDISP-LASLTSLHYFTAYVNQI-TDI 214 (347)
T ss_dssp TTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC-CCCGG-GGGCTTCCEEECCSSCC-CCC
T ss_pred CCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc-ccccc-ccCCCccceeecccCCC-CCC
Confidence 99987776665 8899999999999999998876 88999999999999865 44544 77899999999999954 444
Q ss_pred hhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCC
Q 041071 161 PETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSL 240 (535)
Q Consensus 161 p~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L 240 (535)
+. +..+++|++|++++|.+...+. +..+++|+.|++++|..... +.......++.+++++|.+... ..+..+++|
T Consensus 215 ~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L 289 (347)
T 4fmz_A 215 TP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL 289 (347)
T ss_dssp GG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred ch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCC
Confidence 44 8899999999999999998877 88999999999999987654 3333445688999999988764 358899999
Q ss_pred CEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChhhcCCCCCcEEeccCCcc
Q 041071 241 TKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLKECKM 298 (535)
Q Consensus 241 ~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 298 (535)
+.|++++|.+. +..+..+..+++|+.|++++|.+..++. +..+++|++|++++|+.
T Consensus 290 ~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 290 NSLFLNNNQLG-NEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp SEEECCSSCCC-GGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred CEEECcCCcCC-CcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence 99999999985 3456678889999999999999999886 88999999999999974
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=1e-27 Score=254.63 Aligned_cols=297 Identities=19% Similarity=0.165 Sum_probs=249.8
Q ss_pred CCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCccc-chhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEec
Q 041071 2 ESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKEL-PVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVL 80 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l-~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L 80 (535)
++++.|+|++|......++.+.++++|++|+|++|.+..+ |..+..+++|++|+|++|......+..|.++++|++|+|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 4789999999976666678888999999999999999977 668999999999999997754443445788999999999
Q ss_pred cCCCCCccCcccccCCCCCceeecccccCcccC-ccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCC
Q 041071 81 SGCSKIVKFPETVISVEDLSELFLDRTSITEVP-SSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLEN 159 (535)
Q Consensus 81 s~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~ 159 (535)
++|......|..+..+++|++|++++|.+..++ ..++.+++|+.|++++|......+..+..+++|+.|++++|.....
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 998887778888999999999999999999764 5789999999999999876554445688899999999999966555
Q ss_pred chhhhhccccccEEEecCcccc-CCCcccccCCCCcEEEcCCCCCCCCCCccc-cccccccccccCCCcccccCCcccCC
Q 041071 160 VPETLRQIESLEKLDISGTAIR-QPLSSIFLMKNLKELSCRGCKGSPSSASWF-LRFPINLMRWSSNPVALSFPSSLSGL 237 (535)
Q Consensus 160 lp~~l~~l~~L~~L~L~~~~i~-~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~-~~~~l~~l~l~~n~~~~~lp~~l~~l 237 (535)
.+..+..+++|+.|++++|... .++.......+|+.|++++|.........+ ....++.+++++|.+....+..+..+
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence 5567889999999999998655 566666667799999999998765543222 23458899999999998888889999
Q ss_pred CCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChh-hcCCCCCcEEeccCCccc
Q 041071 238 CSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPAS-IYRLSSLLGIDLKECKML 299 (535)
Q Consensus 238 ~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~L 299 (535)
++|+.|+|++|.+. +..|..+..+++|+.|+|++|.+..+|.. +..+++|+.|++++|+..
T Consensus 272 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 272 LRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TTCCEEECCSSCCS-EECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ccCCEEECCCCccc-eECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 99999999999985 45678899999999999999999998864 578999999999999864
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=1.8e-27 Score=263.98 Aligned_cols=111 Identities=20% Similarity=0.195 Sum_probs=64.0
Q ss_pred CCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccch-hhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEec
Q 041071 2 ESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPV-SIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVL 80 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~-~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L 80 (535)
++|++|+|++|...+..|..++++++|++|++++|.+..+|. .++.+++|++|++++|......|..++++++|++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 456666666655544445555566666666666666666654 3566666666666665543333345566666666666
Q ss_pred cCCCCCccCcccccCCCCCceeecccccCccc
Q 041071 81 SGCSKIVKFPETVISVEDLSELFLDRTSITEV 112 (535)
Q Consensus 81 s~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~l 112 (535)
++|......|..+..+++|++|++++|.++.+
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred CCCcccccCchhhcccccCCEEEccCCccccc
Confidence 66555444455555555666666655555543
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=4.4e-28 Score=262.90 Aligned_cols=133 Identities=21% Similarity=0.101 Sum_probs=112.8
Q ss_pred CCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccch-hhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEec
Q 041071 2 ESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPV-SIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVL 80 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~-~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L 80 (535)
+++++|+|++|......+..+.++++|++|++++|.+..++. .++.+++|++|++++|......|..|+++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 468999999997666666778899999999999999998864 6889999999999998766656678999999999999
Q ss_pred cCCCCCccCcccccCCCCCceeecccccCcc--cCccccCCCCCCEeccccCcCCC
Q 041071 81 SGCSKIVKFPETVISVEDLSELFLDRTSITE--VPSSIELLTKLQWLNLNDCRSLV 134 (535)
Q Consensus 81 s~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~c~~l~ 134 (535)
++|......+..++.+++|++|++++|.+.. +|..++.+++|++|++++|....
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 9975443333468999999999999999985 68899999999999999886543
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.1e-27 Score=259.76 Aligned_cols=313 Identities=16% Similarity=0.096 Sum_probs=236.7
Q ss_pred CCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCccc-chhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEec
Q 041071 2 ESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKEL-PVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVL 80 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l-~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L 80 (535)
++|++|+|++|......|..++++++|++|++++|.+..+ |..++.+++|++|++++|. +..+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--ccccCCEEEC
Confidence 5799999999976666667888999999999999999987 5678999999999999976 5578875 6999999999
Q ss_pred cCCCCCc-cCcccccCCCCCceeecccccCcccCccccCCCCC--CEeccccCcC--CCccCccccCCC-----------
Q 041071 81 SGCSKIV-KFPETVISVEDLSELFLDRTSITEVPSSIELLTKL--QWLNLNDCRS--LVRLPSSINGLT----------- 144 (535)
Q Consensus 81 s~c~~l~-~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L--~~L~L~~c~~--l~~lp~~i~~l~----------- 144 (535)
++|.... .+|..++.+++|++|++++|.+... .++.+++| +.|++++|.. ....|..+..+.
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 206 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCc
Confidence 9987554 3468899999999999999988752 34444555 7777777655 333333222211
Q ss_pred ----------------------------------------------------------------------CCceeeccCc
Q 041071 145 ----------------------------------------------------------------------SLKTLNLSGC 154 (535)
Q Consensus 145 ----------------------------------------------------------------------~L~~L~Ls~c 154 (535)
+|++|++++|
T Consensus 207 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n 286 (562)
T 3a79_B 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286 (562)
T ss_dssp SCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEE
T ss_pred cchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEecc
Confidence 4555555555
Q ss_pred cCCCCchhhh-----------------------------------------------------hccccccEEEecCcccc
Q 041071 155 FKLENVPETL-----------------------------------------------------RQIESLEKLDISGTAIR 181 (535)
Q Consensus 155 ~~l~~lp~~l-----------------------------------------------------~~l~~L~~L~L~~~~i~ 181 (535)
...+.+|..+ +.+++|++|++++|.+.
T Consensus 287 ~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~ 366 (562)
T 3a79_B 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366 (562)
T ss_dssp EECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCC
T ss_pred EeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccc
Confidence 4333333322 67789999999999999
Q ss_pred C-CCcccccCCCCcEEEcCCCCCCCCCC--c-cccccccccccccCCCcccccCC-cccCCCCCCEEecCCCCCCCCCCC
Q 041071 182 Q-PLSSIFLMKNLKELSCRGCKGSPSSA--S-WFLRFPINLMRWSSNPVALSFPS-SLSGLCSLTKLDISDCDLGEGAIP 256 (535)
Q Consensus 182 ~-~~~~i~~l~~L~~L~L~~~~~~~~~~--~-~~~~~~l~~l~l~~n~~~~~lp~-~l~~l~~L~~L~Ls~~~l~~~~lp 256 (535)
+ .|..+..+++|+.|++++|....... . ......++.++++.|.+...+|. .+..+++|++|++++|.+. +.+|
T Consensus 367 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~ 445 (562)
T 3a79_B 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT-GSVF 445 (562)
T ss_dssp TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC-GGGG
T ss_pred cchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC-cchh
Confidence 6 67888999999999999998765332 1 22334588999999999985665 5888999999999999985 3445
Q ss_pred CCCCCCCCCCEEeCCCCcCCCCChhhcCCCCCcEEeccCCcccccCCCCCCCcceEeccCcccccccccccccc
Q 041071 257 SSIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLKECKMLQNLPRLPASIHWISLNGCVSLETLSDVLNLN 330 (535)
Q Consensus 257 ~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~~~~C~sL~~l~~~~n~~ 330 (535)
..+. ++|+.|+|++|++..+|..+..+++|++|++++|+. +.+|. . .+.++++|+.+....|+.
T Consensus 446 ~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l-~~l~~---~----~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 446 RCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL-KSVPD---G----VFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp SSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCC-CCCCT---T----STTTCTTCCCEECCSCCB
T ss_pred hhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCC-CCCCH---H----HHhcCCCCCEEEecCCCc
Confidence 4443 799999999999999999999999999999999974 45654 2 244566777777666654
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.9e-27 Score=258.02 Aligned_cols=311 Identities=17% Similarity=0.111 Sum_probs=241.4
Q ss_pred CCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccc-hhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEecc
Q 041071 3 SLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELP-VSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLS 81 (535)
Q Consensus 3 ~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~-~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls 81 (535)
..++++++++. ++.+|..+ .++|++|++++|.+..++ ..+..+++|++|++++|......|..|.++++|++|+|+
T Consensus 32 ~~~~l~ls~~~-L~~ip~~~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 32 LESMVDYSNRN-LTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp -CCEEECTTSC-CCSCCTTS--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCcEEEcCCCC-CccCCCCC--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 34789999985 55688755 489999999999999887 479999999999999987666668889999999999999
Q ss_pred CCCCCccCcccccCCCCCceeecccccCcccC--ccccCCCCCCEeccccCcCCCccCccccCCCCC--ceeeccCccC-
Q 041071 82 GCSKIVKFPETVISVEDLSELFLDRTSITEVP--SSIELLTKLQWLNLNDCRSLVRLPSSINGLTSL--KTLNLSGCFK- 156 (535)
Q Consensus 82 ~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L--~~L~Ls~c~~- 156 (535)
+|. +..+|.. .+++|++|++++|.+..++ ..++.+++|++|++++|..... .+..+++| ++|++++|..
T Consensus 109 ~N~-l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 109 HNR-LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp TSC-CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCC
T ss_pred CCc-CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccc
Confidence 976 5578877 8999999999999999765 7899999999999999876542 34555666 9999999865
Q ss_pred -CCCchhhhhcc--------------------------------------------------------------------
Q 041071 157 -LENVPETLRQI-------------------------------------------------------------------- 167 (535)
Q Consensus 157 -l~~lp~~l~~l-------------------------------------------------------------------- 167 (535)
....|..+..+
T Consensus 183 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262 (562)
T ss_dssp CCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred ccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence 33333333221
Q ss_pred -------------ccccEEEecCcccc-CCCccc----------------------------------------------
Q 041071 168 -------------ESLEKLDISGTAIR-QPLSSI---------------------------------------------- 187 (535)
Q Consensus 168 -------------~~L~~L~L~~~~i~-~~~~~i---------------------------------------------- 187 (535)
.+|++|++++|.+. .+|..+
T Consensus 263 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~ 342 (562)
T 3a79_B 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342 (562)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCC
Confidence 16777777777776 455443
Q ss_pred -------ccCCCCcEEEcCCCCCCCCCCccc-cccccccccccCCCccc--ccCCcccCCCCCCEEecCCCCCCCCCCCC
Q 041071 188 -------FLMKNLKELSCRGCKGSPSSASWF-LRFPINLMRWSSNPVAL--SFPSSLSGLCSLTKLDISDCDLGEGAIPS 257 (535)
Q Consensus 188 -------~~l~~L~~L~L~~~~~~~~~~~~~-~~~~l~~l~l~~n~~~~--~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~ 257 (535)
..+++|++|++++|......+..+ ....++.++++.|.+.. .+|..+..+++|+.|++++|.+....-+.
T Consensus 343 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 422 (562)
T 3a79_B 343 FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422 (562)
T ss_dssp CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC
T ss_pred cccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh
Confidence 567899999999998876444433 33458999999999886 45667899999999999999985423334
Q ss_pred CCCCCCCCCEEeCCCCcCC-CCChhhcCCCCCcEEeccCCcccccCCC-C--CCCcceEeccCcccccccccc
Q 041071 258 SIGDLCSLEELHLSGNNFF-TLPASIYRLSSLLGIDLKECKMLQNLPR-L--PASIHWISLNGCVSLETLSDV 326 (535)
Q Consensus 258 ~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~-l--p~sL~~L~~~~C~sL~~l~~~ 326 (535)
.+..+++|+.|++++|.+. .+|..+. ++|++|++++|+ ++.+|. + .++|+.|++.++ .++.++..
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~ 491 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASN-QLKSVPDG 491 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSS-CCCCCCTT
T ss_pred hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc-CcccChhhcCCCCCCEEECCCC-CCCCCCHH
Confidence 5788999999999999996 3443332 799999999995 567775 2 357888888876 46666543
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=5.2e-27 Score=266.38 Aligned_cols=276 Identities=19% Similarity=0.177 Sum_probs=173.2
Q ss_pred CCCCcEEecCCCcCCCCC-CcccCCCCcCcEEEeeccCCccc-chhhhcCCCccEEeccCCCCCCccCcc--cCCCCCCC
Q 041071 1 MESLKTLVLSGCSKLKKF-PDIVGGMECLQELRVDGTDIKEL-PVSIELMSGLVSLNLKDCRNLTTLPIT--IGNLECLQ 76 (535)
Q Consensus 1 L~~L~~L~Ls~~~~l~~l-p~~~~~~~~L~~L~L~~~~l~~l-~~~i~~l~~L~~L~Ls~~~~l~~lp~~--l~~l~~L~ 76 (535)
|++|++|+|++|.....+ |..++++++|++|+|++|.+..+ |..++.+++|++|+|++|.....+|.. +.++++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 578999999999777666 68889999999999999999877 778999999999999998876666654 88999999
Q ss_pred EEeccCCCCCccCc-ccccCCCCCceeecccccCccc-CccccCC--CCCCEeccccCcCCCccCccccCCCC------C
Q 041071 77 TLVLSGCSKIVKFP-ETVISVEDLSELFLDRTSITEV-PSSIELL--TKLQWLNLNDCRSLVRLPSSINGLTS------L 146 (535)
Q Consensus 77 ~L~Ls~c~~l~~~p-~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l--~~L~~L~L~~c~~l~~lp~~i~~l~~------L 146 (535)
+|+|++|......+ ..++++++|++|++++|.+..+ +..++.+ ++|+.|++++|......|..+..+.+ |
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L 206 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence 99999987665544 5789999999999999988753 4455554 56666666666555555544443333 5
Q ss_pred ceeeccCccCCCCchhhhhc--------------------------------------cccccEEEecCccccCC-Cccc
Q 041071 147 KTLNLSGCFKLENVPETLRQ--------------------------------------IESLEKLDISGTAIRQP-LSSI 187 (535)
Q Consensus 147 ~~L~Ls~c~~l~~lp~~l~~--------------------------------------l~~L~~L~L~~~~i~~~-~~~i 187 (535)
++|++++|......+..+.. .++|+.|++++|.+..+ +..+
T Consensus 207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~ 286 (844)
T 3j0a_A 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286 (844)
T ss_dssp SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS
T ss_pred eEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh
Confidence 56666555322222211110 13455555555555433 2334
Q ss_pred ccCCCCcEEEcCCCCCCCCCCcccc-ccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCC
Q 041071 188 FLMKNLKELSCRGCKGSPSSASWFL-RFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLE 266 (535)
Q Consensus 188 ~~l~~L~~L~L~~~~~~~~~~~~~~-~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~ 266 (535)
..+++|+.|++++|......+..+. ...++.++++.|.+....|..+..+++|+.|++++|.+. ...+..+..+++|+
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~ 365 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQ 365 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC-CCCSSCSCSCCCCC
T ss_pred hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC-ccChhhhcCCCCCC
Confidence 4455555555555554333222221 223455555555555444555555555555555555542 22223344455555
Q ss_pred EEeCCCCcCCC
Q 041071 267 ELHLSGNNFFT 277 (535)
Q Consensus 267 ~L~Ls~n~l~~ 277 (535)
.|+|++|.+..
T Consensus 366 ~L~Ls~N~l~~ 376 (844)
T 3j0a_A 366 TLDLRDNALTT 376 (844)
T ss_dssp EEEEETCCSCC
T ss_pred EEECCCCCCCc
Confidence 55555554443
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.6e-26 Score=244.88 Aligned_cols=295 Identities=20% Similarity=0.298 Sum_probs=220.8
Q ss_pred CCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEecc
Q 041071 2 ESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLS 81 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls 81 (535)
++|+.|+++++. +..+|. +..+++|++|++++|.+..++. +..+++|++|++++|... .++. +.++++|++|+++
T Consensus 46 ~~l~~L~l~~~~-i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 46 DQVTTLQADRLG-IKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIA-DITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HTCCEEECCSSC-CCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECC
T ss_pred ccccEEecCCCC-CccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccc-cChh-hcCCCCCCEEECC
Confidence 578999999985 456775 5589999999999999998887 899999999999987644 4444 8889999999999
Q ss_pred CCCCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCch
Q 041071 82 GCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVP 161 (535)
Q Consensus 82 ~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp 161 (535)
+|. +..++. +..+++|++|++++|.+..++ .++.+++|+.|++.++ ...++. +..+++|++|++++|. +..++
T Consensus 121 ~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~--~~~~~~-~~~l~~L~~L~l~~n~-l~~~~ 193 (466)
T 1o6v_A 121 NNQ-ITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ--VTDLKP-LANLTTLERLDISSNK-VSDIS 193 (466)
T ss_dssp SSC-CCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES--CCCCGG-GTTCTTCCEEECCSSC-CCCCG
T ss_pred CCC-CCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCc--ccCchh-hccCCCCCEEECcCCc-CCCCh
Confidence 975 445554 889999999999999998876 4788888888888642 233333 7778888888888884 44443
Q ss_pred hhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCC
Q 041071 162 ETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLT 241 (535)
Q Consensus 162 ~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~ 241 (535)
.+..+++|+.|++++|.+...++ +..+++|+.|++++|..... +.......++.++++.|.+.+..+ +..+++|+
T Consensus 194 -~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 268 (466)
T 1o6v_A 194 -VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 268 (466)
T ss_dssp -GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred -hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh--hhcCCCCC
Confidence 47778888888888888877655 67788888888888876543 223333457788888887776544 77788888
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChhhcCCCCCcEEeccCCcccccCC-CCCCCcceEeccCc
Q 041071 242 KLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLKECKMLQNLP-RLPASIHWISLNGC 317 (535)
Q Consensus 242 ~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp-~lp~sL~~L~~~~C 317 (535)
.|++++|.+.. ++. +..+++|+.|++++|.+..++. +..+++|+.|++++|+.....| .-.++|+.|++.+|
T Consensus 269 ~L~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 269 ELKLGANQISN--ISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN 341 (466)
T ss_dssp EEECCSSCCCC--CGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS
T ss_pred EEECCCCccCc--ccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC
Confidence 88888887754 333 6778888888888888887775 7778888888888886443322 12356677776665
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.3e-26 Score=245.56 Aligned_cols=296 Identities=20% Similarity=0.319 Sum_probs=214.7
Q ss_pred CCCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEec
Q 041071 1 MESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVL 80 (535)
Q Consensus 1 L~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L 80 (535)
+++|++|+|++|.. ..++. ++.+++|++|++++|.+..++. +..+++|++|++++|. +..++. +.++++|++|++
T Consensus 67 l~~L~~L~Ls~n~l-~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l 141 (466)
T 1o6v_A 67 LNNLTQINFSNNQL-TDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLEL 141 (466)
T ss_dssp CTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEE
T ss_pred hcCCCEEECCCCcc-CCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEEC
Confidence 57899999999864 45555 7799999999999999998887 8999999999999976 455555 888999999999
Q ss_pred cCCCCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCc
Q 041071 81 SGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENV 160 (535)
Q Consensus 81 s~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l 160 (535)
++|. +..++ .+..+++|++|+++ +.+..++. ++.+++|+.|++++|.. ..++ .+..+++|++|++++|......
T Consensus 142 ~~n~-l~~~~-~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~l~~n~l~~~~ 215 (466)
T 1o6v_A 142 SSNT-ISDIS-ALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKV-SDIS-VLAKLTNLESLIATNNQISDIT 215 (466)
T ss_dssp EEEE-ECCCG-GGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCC-CCCG-GGGGCTTCSEEECCSSCCCCCG
T ss_pred CCCc-cCCCh-hhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcC-CCCh-hhccCCCCCEEEecCCcccccc
Confidence 9975 44454 37778888888885 45555543 77888888888888764 3343 3667888888888887544433
Q ss_pred hhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCC
Q 041071 161 PETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSL 240 (535)
Q Consensus 161 p~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L 240 (535)
| ++.+++|+.|++++|.+..++ .+..+++|+.|++++|......+ ......++.+++++|.+....+ +..+++|
T Consensus 216 ~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 289 (466)
T 1o6v_A 216 P--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTAL 289 (466)
T ss_dssp G--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred c--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCcc
Confidence 3 667788888888888877653 56777888888888887655433 3333457777888877765433 6777888
Q ss_pred CEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChhhcCCCCCcEEeccCCcccccCCCC--CCCcceEeccCcc
Q 041071 241 TKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLKECKMLQNLPRL--PASIHWISLNGCV 318 (535)
Q Consensus 241 ~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l--p~sL~~L~~~~C~ 318 (535)
+.|++++|.+.. ++. +..+++|+.|++++|.+..++. +..+++|++|++++|+. +.++.+ .++|+.|++.+|.
T Consensus 290 ~~L~L~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 290 TNLELNENQLED--ISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKV-SDVSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp SEEECCSSCCSC--CGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSC
T ss_pred CeEEcCCCcccC--chh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCcc-CCchhhccCCCCCEEeCCCCc
Confidence 888888887753 332 6677888888888888777664 67778888888888753 334332 2456666666553
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=1.1e-26 Score=245.34 Aligned_cols=277 Identities=21% Similarity=0.201 Sum_probs=164.8
Q ss_pred CCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEecc
Q 041071 2 ESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLS 81 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls 81 (535)
++|++|++++|.. +.+| .++.+++|++|++++|.+..+| ++.+++|++|++++|. +..+| ++++++|++|+++
T Consensus 42 ~~L~~L~Ls~n~l-~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 42 ATLTSLDCHNSSI-TDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCD 114 (457)
T ss_dssp TTCCEEECCSSCC-CCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECC
T ss_pred CCCCEEEccCCCc-ccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCEEECC
Confidence 4556666666533 2334 2445666666666666665554 5556666666666554 22333 5556666666666
Q ss_pred CCCCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCch
Q 041071 82 GCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVP 161 (535)
Q Consensus 82 ~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp 161 (535)
+|.. ..+| ++.+++|++|++++|.++.++ ++.+++|++|++++|...+.+ .+..+++|++|++++| .+..+|
T Consensus 115 ~N~l-~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~ 186 (457)
T 3bz5_A 115 TNKL-TKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELD 186 (457)
T ss_dssp SSCC-SCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCC
T ss_pred CCcC-Ceec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceec
Confidence 5432 2333 555566666666666665553 555566666666655544444 2445556666666655 233344
Q ss_pred hhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCC
Q 041071 162 ETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLT 241 (535)
Q Consensus 162 ~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~ 241 (535)
++.+++|+.|++++|.++.+ .+..+++|+.|++++|+ +.+ +| +..+++|+
T Consensus 187 --l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~-----------------------l~~-ip--~~~l~~L~ 236 (457)
T 3bz5_A 187 --VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNK-----------------------LTE-ID--VTPLTQLT 236 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSC-----------------------CSC-CC--CTTCTTCS
T ss_pred --cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCc-----------------------ccc-cC--ccccCCCC
Confidence 45555666666666655554 24555555555555554 433 34 66777888
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCC-----------CChhhcCCCCCcEEeccCCcccccCCCCCCCcc
Q 041071 242 KLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFT-----------LPASIYRLSSLLGIDLKECKMLQNLPRLPASIH 310 (535)
Q Consensus 242 ~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~-----------lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~ 310 (535)
.|++++|.+.. +| ++.+++|+.|++++|++.. +| +..+++|+.|++++|+.++.+|.-.+.|+
T Consensus 237 ~L~l~~N~l~~--~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~ 310 (457)
T 3bz5_A 237 YFDCSVNPLTE--LD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGIT 310 (457)
T ss_dssp EEECCSSCCSC--CC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCS
T ss_pred EEEeeCCcCCC--cC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcce
Confidence 88888887754 33 3445555555555444432 33 45678899999999988888887667888
Q ss_pred eEeccCccccccccccccc
Q 041071 311 WISLNGCVSLETLSDVLNL 329 (535)
Q Consensus 311 ~L~~~~C~sL~~l~~~~n~ 329 (535)
.|++.+|++|+.+....|.
T Consensus 311 ~L~l~~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 311 ELDLSQNPKLVYLYLNNTE 329 (457)
T ss_dssp CCCCTTCTTCCEEECTTCC
T ss_pred EechhhcccCCEEECCCCc
Confidence 8888888888888776654
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=1.1e-26 Score=240.24 Aligned_cols=281 Identities=18% Similarity=0.112 Sum_probs=232.3
Q ss_pred CCCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccch-hhhcCCCccEEeccCCCCCCccCcc-cCCCCCCCEE
Q 041071 1 MESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPV-SIELMSGLVSLNLKDCRNLTTLPIT-IGNLECLQTL 78 (535)
Q Consensus 1 L~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~-~i~~l~~L~~L~Ls~~~~l~~lp~~-l~~l~~L~~L 78 (535)
+++|++|+|++|......+..++.+++|++|++++|.+..++. .++.+++|++|++++|.. ..+|.. +.++++|++|
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCcc-CcCCHHHhcCCCCCcEE
Confidence 5789999999997665566788899999999999999998865 579999999999999864 456654 5889999999
Q ss_pred eccCCCCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCC
Q 041071 79 VLSGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLE 158 (535)
Q Consensus 79 ~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~ 158 (535)
++++|......|..+..+++|++|++++|.+..++ ++.+++|+.|++++|... . +...++|++|++++|. +.
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~-~----~~~~~~L~~L~l~~n~-l~ 218 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS-T----LAIPIAVEELDASHNS-IN 218 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCS-E----EECCSSCSEEECCSSC-CC
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccc-c----cCCCCcceEEECCCCe-ee
Confidence 99998777666778999999999999999999875 677899999999987543 2 2345689999999884 44
Q ss_pred CchhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCccc-cccccccccccCCCcccccCCcccCC
Q 041071 159 NVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWF-LRFPINLMRWSSNPVALSFPSSLSGL 237 (535)
Q Consensus 159 ~lp~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~-~~~~l~~l~l~~n~~~~~lp~~l~~l 237 (535)
.+|.. ..++|+.|++++|.+... ..+..+++|+.|++++|......+..+ ....++.+++++|.+.. +|..+..+
T Consensus 219 ~~~~~--~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l 294 (390)
T 3o6n_A 219 VVRGP--VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI 294 (390)
T ss_dssp EEECC--CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCC
T ss_pred ecccc--ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCC
Confidence 44442 347899999999988876 567888999999999998765544333 33458888999988875 56667889
Q ss_pred CCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChhhcCCCCCcEEeccCCcc
Q 041071 238 CSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLKECKM 298 (535)
Q Consensus 238 ~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 298 (535)
++|++|+|++|.+.. +|..+..+++|+.|+|++|.+..+| +..+++|+.|++++|+.
T Consensus 295 ~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 295 PTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp TTCCEEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCE
T ss_pred CCCCEEECCCCccee--cCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCc
Confidence 999999999999964 7888888999999999999999987 78899999999999975
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=1.2e-27 Score=240.37 Aligned_cols=251 Identities=18% Similarity=0.236 Sum_probs=215.1
Q ss_pred CcCcEEEeeccCCc---ccchhhhcCCCccEEeccC-CCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCce
Q 041071 26 ECLQELRVDGTDIK---ELPVSIELMSGLVSLNLKD-CRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSE 101 (535)
Q Consensus 26 ~~L~~L~L~~~~l~---~l~~~i~~l~~L~~L~Ls~-~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~ 101 (535)
.++++|+++++.+. .+|..++.+++|++|++++ +.....+|..++++++|++|+|++|...+.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57899999998887 5888899999999999995 6666688888999999999999998777788999999999999
Q ss_pred eecccccCc-ccCccccCCCCCCEeccccCcCCCccCccccCCC-CCceeeccCccCCCCchhhhhccccccEEEecCcc
Q 041071 102 LFLDRTSIT-EVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLT-SLKTLNLSGCFKLENVPETLRQIESLEKLDISGTA 179 (535)
Q Consensus 102 L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~-~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~ 179 (535)
|++++|.+. .+|..++.+++|++|++++|...+.+|..+..++ +|++|++++|.....+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999998 7888899999999999999887778888888887 999999999977678888888887 9999999999
Q ss_pred cc-CCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCC
Q 041071 180 IR-QPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSS 258 (535)
Q Consensus 180 i~-~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~ 258 (535)
+. ..+..+..+++|+.|++++|.... ..|. +..+++|++|+|++|.+. +.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------------~~~~-~~~l~~L~~L~Ls~N~l~-~~~p~~ 263 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAF-----------------------DLGK-VGLSKNLNGLDLRNNRIY-GTLPQG 263 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECC-----------------------BGGG-CCCCTTCCEEECCSSCCE-ECCCGG
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceee-----------------------ecCc-ccccCCCCEEECcCCccc-CcCChH
Confidence 88 456678889999999998876532 2233 667789999999999985 458899
Q ss_pred CCCCCCCCEEeCCCCcCC-CCChhhcCCCCCcEEeccCCcccccCC
Q 041071 259 IGDLCSLEELHLSGNNFF-TLPASIYRLSSLLGIDLKECKMLQNLP 303 (535)
Q Consensus 259 l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp 303 (535)
+..+++|+.|+|++|.+. .+|.. ..+++|+.|++++|+.+...|
T Consensus 264 l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 999999999999999998 67755 889999999999999776544
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=3.2e-26 Score=253.84 Aligned_cols=294 Identities=20% Similarity=0.167 Sum_probs=149.8
Q ss_pred CCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCccc-chhhhcCCCccEEeccCCCCCCccCc-ccCCCCCCCEEec
Q 041071 3 SLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKEL-PVSIELMSGLVSLNLKDCRNLTTLPI-TIGNLECLQTLVL 80 (535)
Q Consensus 3 ~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l-~~~i~~l~~L~~L~Ls~~~~l~~lp~-~l~~l~~L~~L~L 80 (535)
+|++|+|++|......+..++++++|++|++++|.+..+ |..++.+++|++|++++|.. ..+|. .|+++++|++|++
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC-CCCCTTTTTTCTTCSEEEC
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc-CccChhhhccCCCCCEEEC
Confidence 456666666644433334455666666666666666544 33455666666666666543 33333 4556666666666
Q ss_pred cCCCCCccCcccccCCCCCceeecccccCccc-CccccCCCCCCEeccccCcCCCccCccc--cCCCCCceeeccCccCC
Q 041071 81 SGCSKIVKFPETVISVEDLSELFLDRTSITEV-PSSIELLTKLQWLNLNDCRSLVRLPSSI--NGLTSLKTLNLSGCFKL 157 (535)
Q Consensus 81 s~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~i--~~l~~L~~L~Ls~c~~l 157 (535)
++|......|..++.+++|++|++++|.+..+ +..++.+++|++|++++|......+..+ ..+++|++|++++|...
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 66544333345566666666666666666543 3345566666666666655433333322 23456666666666443
Q ss_pred CCchhhhhccc---------------------------cccEEEecCccccCC-CcccccCC--CCcEEEcCCCCCCCCC
Q 041071 158 ENVPETLRQIE---------------------------SLEKLDISGTAIRQP-LSSIFLMK--NLKELSCRGCKGSPSS 207 (535)
Q Consensus 158 ~~lp~~l~~l~---------------------------~L~~L~L~~~~i~~~-~~~i~~l~--~L~~L~L~~~~~~~~~ 207 (535)
+..|..+..+. +|+.|++++|.+... +..+..++ +|+.|++++|......
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 33344343332 333444444443322 22333332 2555555555443322
Q ss_pred Ccccc-ccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCC----CCCCC----CCCCCCCCCEEeCCCCcCCCC
Q 041071 208 ASWFL-RFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGE----GAIPS----SIGDLCSLEELHLSGNNFFTL 278 (535)
Q Consensus 208 ~~~~~-~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~----~~lp~----~l~~l~~L~~L~Ls~n~l~~l 278 (535)
+..+. ...++.++++.|.+.+..|..+.++++|+.|++++|.... ..+|. .+..+++|+.|++++|.+..+
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence 22221 2234555555555555555555555555555555443210 01222 455566666666666666654
Q ss_pred Ch-hhcCCCCCcEEeccCCc
Q 041071 279 PA-SIYRLSSLLGIDLKECK 297 (535)
Q Consensus 279 p~-~i~~l~~L~~L~L~~c~ 297 (535)
+. .+..+++|++|++++|.
T Consensus 345 ~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 345 KSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCB
T ss_pred ChhHhccccCCcEEECCCCc
Confidence 43 45666666666666664
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=3.2e-26 Score=231.62 Aligned_cols=245 Identities=19% Similarity=0.216 Sum_probs=166.3
Q ss_pred CcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecc
Q 041071 26 ECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLD 105 (535)
Q Consensus 26 ~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~ 105 (535)
.+|+.++++++.+..+|..+ .++|+.|++++|......|..+.++++|++|++++|......|..+..+++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 37888999888888888765 4688999998877555556678888999999998887666668888888999999999
Q ss_pred cccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCC--CCchhhhhccccccEEEecCccccCC
Q 041071 106 RTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKL--ENVPETLRQIESLEKLDISGTAIRQP 183 (535)
Q Consensus 106 ~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l--~~lp~~l~~l~~L~~L~L~~~~i~~~ 183 (535)
+|.+..+|..+. ++|++|++++|......+..+..+++|++|++++|... ...+..+..+ +|+.|++++|.+..+
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 998888887765 78889999888765444455778888999988888543 2455666666 888888888888887
Q ss_pred CcccccCCCCcEEEcCCCCCCCCCCccc-cccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCC
Q 041071 184 LSSIFLMKNLKELSCRGCKGSPSSASWF-LRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDL 262 (535)
Q Consensus 184 ~~~i~~l~~L~~L~L~~~~~~~~~~~~~-~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l 262 (535)
|..+. ++|+.|++++|......+..+ ....++.+++++|.+....+..+..+++|+.|+|++|.+.. +|..+..+
T Consensus 188 ~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--lp~~l~~l 263 (332)
T 2ft3_A 188 PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR--VPAGLPDL 263 (332)
T ss_dssp CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB--CCTTGGGC
T ss_pred Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee--cChhhhcC
Confidence 76554 677777777776554332211 11224444444444444444444445555555555554432 44444455
Q ss_pred CCCCEEeCCCCcCCCCC
Q 041071 263 CSLEELHLSGNNFFTLP 279 (535)
Q Consensus 263 ~~L~~L~Ls~n~l~~lp 279 (535)
++|+.|++++|.+..+|
T Consensus 264 ~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVG 280 (332)
T ss_dssp TTCCEEECCSSCCCBCC
T ss_pred ccCCEEECCCCCCCccC
Confidence 55555555555554443
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=5.6e-26 Score=229.61 Aligned_cols=242 Identities=21% Similarity=0.252 Sum_probs=159.6
Q ss_pred CcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecc
Q 041071 26 ECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLD 105 (535)
Q Consensus 26 ~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~ 105 (535)
.+|+.++++++.+..+|..+ .++|++|++++|......+..+.++++|++|+|++|......|..+..+++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 37788888888888877655 3678888888876544444467778888888888876655567778888888888888
Q ss_pred cccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCC--CchhhhhccccccEEEecCccccCC
Q 041071 106 RTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLE--NVPETLRQIESLEKLDISGTAIRQP 183 (535)
Q Consensus 106 ~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~--~lp~~l~~l~~L~~L~L~~~~i~~~ 183 (535)
+|.++.+|..+. ++|++|++++|......+..+..+++|++|++++|.... ..+..+..+++|+.|++++|.+..+
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 888887776654 678888888776655445556778888888888775432 4556677788888888888887777
Q ss_pred CcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCC
Q 041071 184 LSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLC 263 (535)
Q Consensus 184 ~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~ 263 (535)
|..+. ++|+.|++++|..... .+..+..+++|+.|+|++|.+.. ..+..+..++
T Consensus 187 ~~~~~--~~L~~L~l~~n~l~~~-----------------------~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~ 240 (330)
T 1xku_A 187 PQGLP--PSLTELHLDGNKITKV-----------------------DAASLKGLNNLAKLGLSFNSISA-VDNGSLANTP 240 (330)
T ss_dssp CSSCC--TTCSEEECTTSCCCEE-----------------------CTGGGTTCTTCCEEECCSSCCCE-ECTTTGGGST
T ss_pred Ccccc--ccCCEEECCCCcCCcc-----------------------CHHHhcCCCCCCEEECCCCcCce-eChhhccCCC
Confidence 66553 6777777777664422 23334455555555555555432 2223444555
Q ss_pred CCCEEeCCCCcCCCCChhhcCCCCCcEEeccCCc
Q 041071 264 SLEELHLSGNNFFTLPASIYRLSSLLGIDLKECK 297 (535)
Q Consensus 264 ~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 297 (535)
+|+.|+|++|.+..+|..+..+++|++|++++|+
T Consensus 241 ~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 241 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp TCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC
T ss_pred CCCEEECCCCcCccCChhhccCCCcCEEECCCCc
Confidence 5555555555555555555555555555555554
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=2.1e-26 Score=251.55 Aligned_cols=282 Identities=18% Similarity=0.113 Sum_probs=235.6
Q ss_pred CCCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchh-hhcCCCccEEeccCCCCCCccCc-ccCCCCCCCEE
Q 041071 1 MESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVS-IELMSGLVSLNLKDCRNLTTLPI-TIGNLECLQTL 78 (535)
Q Consensus 1 L~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~-i~~l~~L~~L~Ls~~~~l~~lp~-~l~~l~~L~~L 78 (535)
+++|++|+|++|......|..++.+++|++|+|++|.+..++.. ++.+++|++|+|++|... .+|. .|+++++|++|
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTL 152 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEE
Confidence 57899999999987666667888999999999999999988764 699999999999998655 5554 46899999999
Q ss_pred eccCCCCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCC
Q 041071 79 VLSGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLE 158 (535)
Q Consensus 79 ~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~ 158 (535)
+|++|......|..+..+++|++|++++|.+..++ ++.+++|+.|++++|... . +...++|+.|++++|. +.
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~-~----l~~~~~L~~L~ls~n~-l~ 224 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS-T----LAIPIAVEELDASHNS-IN 224 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCS-E----EECCTTCSEEECCSSC-CC
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccc-c----ccCCchhheeeccCCc-cc
Confidence 99999877777788999999999999999999875 667899999999987543 2 3446789999999984 44
Q ss_pred CchhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCcccc-ccccccccccCCCcccccCCcccCC
Q 041071 159 NVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFL-RFPINLMRWSSNPVALSFPSSLSGL 237 (535)
Q Consensus 159 ~lp~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~-~~~l~~l~l~~n~~~~~lp~~l~~l 237 (535)
.++..+ .++|+.|++++|.+... ..+..+++|+.|++++|......+..+. ...++.+++++|.+.+ +|..+..+
T Consensus 225 ~~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l 300 (597)
T 3oja_B 225 VVRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI 300 (597)
T ss_dssp EEECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCC
T ss_pred cccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccC
Confidence 444332 36899999999998874 6788899999999999987665444433 3458889999998876 56667889
Q ss_pred CCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChhhcCCCCCcEEeccCCccc
Q 041071 238 CSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLKECKML 299 (535)
Q Consensus 238 ~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L 299 (535)
++|+.|+|++|.+.. +|..+..+++|+.|+|++|.+..+| +..+++|+.|++++|+.-
T Consensus 301 ~~L~~L~Ls~N~l~~--i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 301 PTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp TTCCEEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred CCCcEEECCCCCCCc--cCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCC
Confidence 999999999999974 8888899999999999999999887 778999999999999863
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=2.3e-27 Score=238.21 Aligned_cols=231 Identities=17% Similarity=0.242 Sum_probs=201.2
Q ss_pred CCccEEeccCCCCCC--ccCcccCCCCCCCEEeccC-CCCCccCcccccCCCCCceeecccccCc-ccCccccCCCCCCE
Q 041071 49 SGLVSLNLKDCRNLT--TLPITIGNLECLQTLVLSG-CSKIVKFPETVISVEDLSELFLDRTSIT-EVPSSIELLTKLQW 124 (535)
Q Consensus 49 ~~L~~L~Ls~~~~l~--~lp~~l~~l~~L~~L~Ls~-c~~l~~~p~~l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~ 124 (535)
.+++.|+++++.... .+|..+.++++|++|++++ |.....+|..+..+++|++|++++|.+. .+|..++.+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999988776 7898899999999999996 6666689999999999999999999998 78889999999999
Q ss_pred eccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccc-cccEEEecCcccc-CCCcccccCCCCcEEEcCCCC
Q 041071 125 LNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIE-SLEKLDISGTAIR-QPLSSIFLMKNLKELSCRGCK 202 (535)
Q Consensus 125 L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~-~L~~L~L~~~~i~-~~~~~i~~l~~L~~L~L~~~~ 202 (535)
|++++|.....+|..+..+++|++|++++|.....+|..++.++ +|+.|++++|.+. ..|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999988878999999999999999999976668899999998 9999999999998 6777788776 9998888765
Q ss_pred CCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCC-CCChh
Q 041071 203 GSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFF-TLPAS 281 (535)
Q Consensus 203 ~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~ 281 (535)
.. +..|..+..+++|+.|+|++|.+.. .+..+..+++|++|+|++|.+. .+|..
T Consensus 209 l~-----------------------~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 209 LE-----------------------GDASVLFGSDKNTQKIHLAKNSLAF--DLGKVGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp EE-----------------------ECCGGGCCTTSCCSEEECCSSEECC--BGGGCCCCTTCCEEECCSSCCEECCCGG
T ss_pred cc-----------------------CcCCHHHhcCCCCCEEECCCCceee--ecCcccccCCCCEEECcCCcccCcCChH
Confidence 33 3456668889999999999999853 3334788899999999999998 88999
Q ss_pred hcCCCCCcEEeccCCcccccCCCC
Q 041071 282 IYRLSSLLGIDLKECKMLQNLPRL 305 (535)
Q Consensus 282 i~~l~~L~~L~L~~c~~L~~lp~l 305 (535)
+..+++|++|++++|+..+.+|..
T Consensus 264 l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCCS
T ss_pred HhcCcCCCEEECcCCcccccCCCC
Confidence 999999999999999988888864
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=1e-25 Score=227.90 Aligned_cols=284 Identities=19% Similarity=0.221 Sum_probs=230.5
Q ss_pred CCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccch-hhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEecc
Q 041071 3 SLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPV-SIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLS 81 (535)
Q Consensus 3 ~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~-~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls 81 (535)
+++.++++++. ++.+|..+ .++|++|++++|.+..++. .+..+++|++|++++|......|..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~-l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSC-CSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCC-ccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 58999999985 56788766 5799999999999998854 78999999999999988666668889999999999999
Q ss_pred CCCCCccCcccccCCCCCceeecccccCcccCc-cccCCCCCCEeccccCcCC--CccCccccCCCCCceeeccCccCCC
Q 041071 82 GCSKIVKFPETVISVEDLSELFLDRTSITEVPS-SIELLTKLQWLNLNDCRSL--VRLPSSINGLTSLKTLNLSGCFKLE 158 (535)
Q Consensus 82 ~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l--~~lp~~i~~l~~L~~L~Ls~c~~l~ 158 (535)
+|. +..+|..+. ++|++|++++|.+..++. .++.+++|+.|++++|... ...+..+..+ +|++|++++|. +.
T Consensus 111 ~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~ 185 (332)
T 2ft3_A 111 KNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LT 185 (332)
T ss_dssp SSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CS
T ss_pred CCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CC
Confidence 975 557776665 899999999999998876 4899999999999998764 2556677777 99999999994 56
Q ss_pred CchhhhhccccccEEEecCccccCCC-cccccCCCCcEEEcCCCCCCCCCCcccc-ccccccccccCCCcccccCCcccC
Q 041071 159 NVPETLRQIESLEKLDISGTAIRQPL-SSIFLMKNLKELSCRGCKGSPSSASWFL-RFPINLMRWSSNPVALSFPSSLSG 236 (535)
Q Consensus 159 ~lp~~l~~l~~L~~L~L~~~~i~~~~-~~i~~l~~L~~L~L~~~~~~~~~~~~~~-~~~l~~l~l~~n~~~~~lp~~l~~ 236 (535)
.+|..+. ++|++|++++|.+..++ ..+..+++|+.|++++|......+..+. ...++.+++++|.+. .+|..+..
T Consensus 186 ~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 186 GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 6776554 79999999999999776 6788999999999999988776554433 345889999999988 78888999
Q ss_pred CCCCCEEecCCCCCCCCCCCCCCCC------CCCCCEEeCCCCcCC---CCChhhcCCCCCcEEeccCCcc
Q 041071 237 LCSLTKLDISDCDLGEGAIPSSIGD------LCSLEELHLSGNNFF---TLPASIYRLSSLLGIDLKECKM 298 (535)
Q Consensus 237 l~~L~~L~Ls~~~l~~~~lp~~l~~------l~~L~~L~Ls~n~l~---~lp~~i~~l~~L~~L~L~~c~~ 298 (535)
+++|+.|++++|.+.. .-+..+.. ..+|+.|++++|.+. ..|..+..+++|+.|++++|++
T Consensus 263 l~~L~~L~l~~N~l~~-~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~~ 332 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITK-VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 332 (332)
T ss_dssp CTTCCEEECCSSCCCB-CCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-----
T ss_pred CccCCEEECCCCCCCc-cChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccccC
Confidence 9999999999999864 22233433 467999999999987 4456788899999999999864
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=4e-25 Score=223.34 Aligned_cols=262 Identities=21% Similarity=0.253 Sum_probs=215.0
Q ss_pred CCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccch-hhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEecc
Q 041071 3 SLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPV-SIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLS 81 (535)
Q Consensus 3 ~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~-~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls 81 (535)
+++.++++++. +..+|..+ .++|++|++++|.+..++. .++.+++|++|++++|......|..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~-l~~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLG-LEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSC-CCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCC-ccccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 68899999875 56778655 4799999999999998876 68999999999999988776668889999999999999
Q ss_pred CCCCCccCcccccCCCCCceeecccccCcccCc-cccCCCCCCEeccccCcCCC--ccCccccCCCCCceeeccCccCCC
Q 041071 82 GCSKIVKFPETVISVEDLSELFLDRTSITEVPS-SIELLTKLQWLNLNDCRSLV--RLPSSINGLTSLKTLNLSGCFKLE 158 (535)
Q Consensus 82 ~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~L~Ls~c~~l~ 158 (535)
+|. +..+|..+. ++|++|++++|.+..++. .++.+++|+.|++++|.... ..+..+..+++|++|++++|. +.
T Consensus 109 ~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~ 184 (330)
T 1xku_A 109 KNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-IT 184 (330)
T ss_dssp SSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CC
T ss_pred CCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cc
Confidence 975 556776654 799999999999998876 58999999999999987643 566778899999999999984 56
Q ss_pred CchhhhhccccccEEEecCccccCC-CcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCC
Q 041071 159 NVPETLRQIESLEKLDISGTAIRQP-LSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGL 237 (535)
Q Consensus 159 ~lp~~l~~l~~L~~L~L~~~~i~~~-~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l 237 (535)
.+|..+. ++|++|++++|.+..+ +..+..+++|+.|++++|.... ..+..+..+
T Consensus 185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------------------~~~~~~~~l 239 (330)
T 1xku_A 185 TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-----------------------VDNGSLANT 239 (330)
T ss_dssp SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-----------------------ECTTTGGGS
T ss_pred cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-----------------------eChhhccCC
Confidence 6776554 7999999999999976 5678899999999999887542 233356777
Q ss_pred CCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChhhc-------CCCCCcEEeccCCcc
Q 041071 238 CSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPASIY-------RLSSLLGIDLKECKM 298 (535)
Q Consensus 238 ~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~-------~l~~L~~L~L~~c~~ 298 (535)
++|++|+|++|.+.. +|..+..+++|++|++++|.+..+|.... ..+.|+.|++++|+.
T Consensus 240 ~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 240 PHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp TTCCEEECCSSCCSS--CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CCCCEEECCCCcCcc--CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 888888888888864 78888888888888888888887775321 246788888888875
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=4.9e-26 Score=230.00 Aligned_cols=220 Identities=25% Similarity=0.353 Sum_probs=121.3
Q ss_pred CcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecc
Q 041071 26 ECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLD 105 (535)
Q Consensus 26 ~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~ 105 (535)
.++++|+++++.+..+|..++.+++|++|++++|... .+|..++++++|++|+|++|.. ..+|..+..+++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEECC
Confidence 4555555555555555555555555555555554433 4555555555555555555432 2455555555555555555
Q ss_pred cccCc-ccCcccc---------CCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEe
Q 041071 106 RTSIT-EVPSSIE---------LLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDI 175 (535)
Q Consensus 106 ~~~i~-~lp~~i~---------~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 175 (535)
+|.+. .+|..++ .+++|++|++++|... .+|..+..+++|++|++++|. +..+|..++.+++|++|++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEEC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEEC
Confidence 53322 4444433 3666777777666443 666666667777777777663 3456666666777777776
Q ss_pred cCccccCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCC
Q 041071 176 SGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAI 255 (535)
Q Consensus 176 ~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~l 255 (535)
++|.+.. .+|..+..+++|+.|+|++|++. +.+
T Consensus 237 s~n~~~~----------------------------------------------~~p~~~~~l~~L~~L~L~~n~~~-~~~ 269 (328)
T 4fcg_A 237 RGCTALR----------------------------------------------NYPPIFGGRAPLKRLILKDCSNL-LTL 269 (328)
T ss_dssp TTCTTCC----------------------------------------------BCCCCTTCCCCCCEEECTTCTTC-CBC
T ss_pred cCCcchh----------------------------------------------hhHHHhcCCCCCCEEECCCCCch-hhc
Confidence 6655442 12233444455555555555442 345
Q ss_pred CCCCCCCCCCCEEeCCCCcCC-CCChhhcCCCCCcEEeccCC
Q 041071 256 PSSIGDLCSLEELHLSGNNFF-TLPASIYRLSSLLGIDLKEC 296 (535)
Q Consensus 256 p~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c 296 (535)
|..+..+++|+.|+|++|++. .+|..+..+++|+.+++..+
T Consensus 270 p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 555555666666666665443 56666666666666666543
No 43
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=6.2e-26 Score=239.34 Aligned_cols=283 Identities=19% Similarity=0.256 Sum_probs=211.0
Q ss_pred CCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCc-ccchhhhcCCCc-------------cEEeccCCCCCCccCc
Q 041071 2 ESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIK-ELPVSIELMSGL-------------VSLNLKDCRNLTTLPI 67 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~-~l~~~i~~l~~L-------------~~L~Ls~~~~l~~lp~ 67 (535)
++|+.|++++|.. +.+|+.++++++|++|++++|.+. .+|.+++.+.+| ++|++++|. +..+|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCC
Confidence 5789999999876 899999999999999999999887 789888888765 999999976 666776
Q ss_pred ccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCc
Q 041071 68 TIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLK 147 (535)
Q Consensus 68 ~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~ 147 (535)
+ .++|++|++++|... .+|.. +.+|++|++++|.+..++.. .++|++|++++|... .+| .+..+++|+
T Consensus 89 -~--~~~L~~L~l~~n~l~-~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~-~lp-~~~~l~~L~ 156 (454)
T 1jl5_A 89 -L--PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLE-KLP-ELQNSSFLK 156 (454)
T ss_dssp -C--CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCS-SCC-CCTTCTTCC
T ss_pred -C--cCCCCEEEccCCcCC-ccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCC-CCc-ccCCCCCCC
Confidence 2 479999999987544 47754 47899999999999987753 278999999998755 488 589999999
Q ss_pred eeeccCccCCCCchhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcc
Q 041071 148 TLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVA 227 (535)
Q Consensus 148 ~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~ 227 (535)
+|++++|. +..+|..+ .+|++|++++|.+..+| .+..+++|+.|++++|....... ....++.+++++|.+.
T Consensus 157 ~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 157 IIDVDNNS-LKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPD---LPLSLESIVAGNNILE 228 (454)
T ss_dssp EEECCSSC-CSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCS
T ss_pred EEECCCCc-CcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCC---CcCcccEEECcCCcCC
Confidence 99999994 55576543 58999999999999877 68899999999999998765322 1246889999999887
Q ss_pred cccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChhhcCCCCCcEEeccCCcccccCCCCCC
Q 041071 228 LSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLKECKMLQNLPRLPA 307 (535)
Q Consensus 228 ~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~ 307 (535)
.+|. +..+++|++|++++|.+.. +|.. +++|+.|++++|.+..+|.. +++|++|++++|+ ++.+|.+|+
T Consensus 229 -~lp~-~~~l~~L~~L~l~~N~l~~--l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~-l~~l~~~~~ 297 (454)
T 1jl5_A 229 -ELPE-LQNLPFLTTIYADNNLLKT--LPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENI-FSGLSELPP 297 (454)
T ss_dssp -SCCC-CTTCTTCCEEECCSSCCSS--CCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSEESCCCT
T ss_pred -cccc-cCCCCCCCEEECCCCcCCc--cccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCc-cCcccCcCC
Confidence 6775 8899999999999998864 6643 47899999999999988864 4788999999886 555777778
Q ss_pred CcceEeccCc
Q 041071 308 SIHWISLNGC 317 (535)
Q Consensus 308 sL~~L~~~~C 317 (535)
+|+.|++.++
T Consensus 298 ~L~~L~l~~N 307 (454)
T 1jl5_A 298 NLYYLNASSN 307 (454)
T ss_dssp TCCEEECCSS
T ss_pred cCCEEECcCC
Confidence 8888887766
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=1.1e-24 Score=229.87 Aligned_cols=276 Identities=16% Similarity=0.155 Sum_probs=220.8
Q ss_pred CCCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEec
Q 041071 1 MESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVL 80 (535)
Q Consensus 1 L~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L 80 (535)
+++|++|+|++|.. +.+| ++.+++|++|++++|.+..++ ++.+++|++|++++|.. ..+| ++.+++|++|++
T Consensus 63 l~~L~~L~Ls~n~l-~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l-~~l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 63 LTGLTKLICTSNNI-TTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKL-TKLD--VSQNPLLTYLNC 134 (457)
T ss_dssp CTTCSEEECCSSCC-SCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCC-SCCC--CTTCTTCCEEEC
T ss_pred cCCCCEEEccCCcC-CeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcC-Ceec--CCCCCcCCEEEC
Confidence 57899999999964 4455 678999999999999999885 88999999999999864 4455 788999999999
Q ss_pred cCCCCCccCcccccCCCCCceeecccc-cCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCC
Q 041071 81 SGCSKIVKFPETVISVEDLSELFLDRT-SITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLEN 159 (535)
Q Consensus 81 s~c~~l~~~p~~l~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~ 159 (535)
++|.... ++ ++.+++|++|++++| .+..+ .++.+++|+.|++++|... .+| +..+++|+.|++++|. +..
T Consensus 135 ~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~-~l~--l~~l~~L~~L~l~~N~-l~~ 205 (457)
T 3bz5_A 135 ARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNN-ITK 205 (457)
T ss_dssp TTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC-CCC--CTTCTTCCEEECCSSC-CSC
T ss_pred CCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc-eec--cccCCCCCEEECcCCc-CCe
Confidence 9976444 43 788999999999999 45555 4788999999999998654 465 7789999999999985 444
Q ss_pred chhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCccccc--------cccccccccCCCcccccC
Q 041071 160 VPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLR--------FPINLMRWSSNPVALSFP 231 (535)
Q Consensus 160 lp~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~--------~~l~~l~l~~n~~~~~lp 231 (535)
+ .++.+++|+.|++++|.+..+| +..+++|+.|++++|.........+.. ..++.++++.|...+.+|
T Consensus 206 ~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~ 281 (457)
T 3bz5_A 206 L--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ 281 (457)
T ss_dssp C--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred e--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc
Confidence 4 3788899999999999999876 788999999999999876543222211 135677888888777777
Q ss_pred CcccCCCCCCEEecCCCCCCCCCCCC--------CCCCCCCCCEEeCCCCcCCCCChhhcCCCCCcEEeccCCcccccCC
Q 041071 232 SSLSGLCSLTKLDISDCDLGEGAIPS--------SIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLKECKMLQNLP 303 (535)
Q Consensus 232 ~~l~~l~~L~~L~Ls~~~l~~~~lp~--------~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 303 (535)
+..+++|+.|++++|.... .+|. .+..+++|+.|++++|+++.++ +..+++|+.|++++|+.- .++
T Consensus 282 --~~~l~~L~~L~Ls~n~~l~-~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~-~l~ 355 (457)
T 3bz5_A 282 --AEGCRKIKELDVTHNTQLY-LLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQ-DFS 355 (457)
T ss_dssp --CTTCTTCCCCCCTTCTTCC-EEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCC-BCT
T ss_pred --ccccccCCEEECCCCcccc-eeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCC-Ccc
Confidence 5788999999999997532 2221 3667789999999999999985 899999999999999753 344
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.5e-25 Score=226.35 Aligned_cols=231 Identities=26% Similarity=0.391 Sum_probs=167.8
Q ss_pred CCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEecc
Q 041071 48 MSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNL 127 (535)
Q Consensus 48 l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 127 (535)
..+++.|++++|. +..+|..+.++++|++|+|++|... .+|..++.+++|++|++++|.+..+|..++.+++|++|++
T Consensus 80 ~~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCC-chhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 4677888887755 4467777777778888888776544 7777777777777777777777777777777777777777
Q ss_pred ccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCC
Q 041071 128 NDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSS 207 (535)
Q Consensus 128 ~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~ 207 (535)
++|...+.+|..+.. ..+ +..++.+++|++|++++|.++.+|..+..+++|+.|++++|...
T Consensus 158 ~~n~~~~~~p~~~~~------~~~---------~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~--- 219 (328)
T 4fcg_A 158 RACPELTELPEPLAS------TDA---------SGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS--- 219 (328)
T ss_dssp EEETTCCCCCSCSEE------EC----------CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC---
T ss_pred CCCCCccccChhHhh------ccc---------hhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC---
Confidence 777777766665443 000 11133466666666666666666666666777777776666543
Q ss_pred CccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCC-CCChhhcCCC
Q 041071 208 ASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFF-TLPASIYRLS 286 (535)
Q Consensus 208 ~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~ 286 (535)
.+|..+..+++|++|+|++|++. +.+|..+..+++|+.|+|++|++. .+|..+..++
T Consensus 220 ---------------------~l~~~l~~l~~L~~L~Ls~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~ 277 (328)
T 4fcg_A 220 ---------------------ALGPAIHHLPKLEELDLRGCTAL-RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277 (328)
T ss_dssp ---------------------CCCGGGGGCTTCCEEECTTCTTC-CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT
T ss_pred ---------------------cCchhhccCCCCCEEECcCCcch-hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC
Confidence 23445778889999999999884 568999999999999999998765 8899999999
Q ss_pred CCcEEeccCCcccccCCCCCCCcceEeccCcccccccccccc
Q 041071 287 SLLGIDLKECKMLQNLPRLPASIHWISLNGCVSLETLSDVLN 328 (535)
Q Consensus 287 ~L~~L~L~~c~~L~~lp~lp~sL~~L~~~~C~sL~~l~~~~n 328 (535)
+|++|+|++|+.++.+|. .+.++++|+.+..+.+
T Consensus 278 ~L~~L~L~~n~~~~~iP~--------~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 278 QLEKLDLRGCVNLSRLPS--------LIAQLPANCIILVPPH 311 (328)
T ss_dssp TCCEEECTTCTTCCCCCG--------GGGGSCTTCEEECCGG
T ss_pred CCCEEeCCCCCchhhccH--------HHhhccCceEEeCCHH
Confidence 999999999999998886 2345556666655543
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=2e-24 Score=227.88 Aligned_cols=256 Identities=22% Similarity=0.266 Sum_probs=134.2
Q ss_pred CcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecc
Q 041071 26 ECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLD 105 (535)
Q Consensus 26 ~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~ 105 (535)
++|++|++++|.+..++.. .++|++|++++|.. ..+|. ++++++|++|++++|. +..+|..+ .+|++|+++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l-~~lp~-~~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~ 181 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQL-EKLPE-LQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAG 181 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCC-SSCCC-CTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECC
T ss_pred CCCcEEECCCCccCcccCC---CCCCCEEECcCCCC-CCCcc-cCCCCCCCEEECCCCc-CcccCCCc---ccccEEECc
Confidence 4455555555544444321 14566666666543 33553 6666666666666653 33344332 366666666
Q ss_pred cccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccccCCCc
Q 041071 106 RTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLS 185 (535)
Q Consensus 106 ~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~ 185 (535)
+|.+..+| .++.+++|+.|++++|... .+|.. .++|++|++++| .+..+|. ++.+++|++|++++|.+..+|.
T Consensus 182 ~n~l~~l~-~~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~ 254 (454)
T 1jl5_A 182 NNQLEELP-ELQNLPFLTAIYADNNSLK-KLPDL---PLSLESIVAGNN-ILEELPE-LQNLPFLTTIYADNNLLKTLPD 254 (454)
T ss_dssp SSCCSSCC-CCTTCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSSCCSSCCS
T ss_pred CCcCCcCc-cccCCCCCCEEECCCCcCC-cCCCC---cCcccEEECcCC-cCCcccc-cCCCCCCCEEECCCCcCCcccc
Confidence 66666655 4666666666666665433 24432 235666666666 3345553 5666666666666666665554
Q ss_pred ccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCC-CC
Q 041071 186 SIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDL-CS 264 (535)
Q Consensus 186 ~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l-~~ 264 (535)
. +++|+.|++++|....... ....++.+++++|.+.+ +|.. .++|+.|++++|.+.. ++ .+ ++
T Consensus 255 ~---~~~L~~L~l~~N~l~~l~~---~~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~--i~----~~~~~ 318 (454)
T 1jl5_A 255 L---PPSLEALNVRDNYLTDLPE---LPQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS--LC----DLPPS 318 (454)
T ss_dssp C---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE--EC----CCCTT
T ss_pred c---ccccCEEECCCCcccccCc---ccCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc--cc----CCcCc
Confidence 2 3566666666665443221 11345556666665554 1110 1344555555544432 11 12 35
Q ss_pred CCEEeCCCCcCCCCChhhcCCCCCcEEeccCCcccccCCCCCCCcceEeccCc
Q 041071 265 LEELHLSGNNFFTLPASIYRLSSLLGIDLKECKMLQNLPRLPASIHWISLNGC 317 (535)
Q Consensus 265 L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~~~~C 317 (535)
|+.|++++|.+..+|.. +++|++|++++|+ ++.+|..+++|+.|++.++
T Consensus 319 L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~-l~~lp~~l~~L~~L~L~~N 367 (454)
T 1jl5_A 319 LEELNVSNNKLIELPAL---PPRLERLIASFNH-LAEVPELPQNLKQLHVEYN 367 (454)
T ss_dssp CCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred CCEEECCCCcccccccc---CCcCCEEECCCCc-cccccchhhhccEEECCCC
Confidence 66666666666655543 3556666666654 3345555555666665554
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=4e-25 Score=242.12 Aligned_cols=129 Identities=22% Similarity=0.163 Sum_probs=97.2
Q ss_pred CCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccch-hhhcCCCccEEeccCCCCCCccC-cccCCCCCCCEEec
Q 041071 3 SLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPV-SIELMSGLVSLNLKDCRNLTTLP-ITIGNLECLQTLVL 80 (535)
Q Consensus 3 ~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~-~i~~l~~L~~L~Ls~~~~l~~lp-~~l~~l~~L~~L~L 80 (535)
++++|||++|.+....+..|.++++|++|+|++|.|..++. .++.+++|++|+|++|. ++.+| ..|.++++|++|+|
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEEC
Confidence 67888888886554445677788888888888888888865 47888888888888876 44444 45778888888888
Q ss_pred cCCCCCccCcccccCCCCCceeecccccCcc--cCccccCCCCCCEeccccCcC
Q 041071 81 SGCSKIVKFPETVISVEDLSELFLDRTSITE--VPSSIELLTKLQWLNLNDCRS 132 (535)
Q Consensus 81 s~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~c~~ 132 (535)
++|......+..++.+++|++|++++|.+.. +|..++.+++|++|++++|..
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 8875544444557888888888888888874 466777888888888877653
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=1.8e-24 Score=236.99 Aligned_cols=112 Identities=22% Similarity=0.271 Sum_probs=95.1
Q ss_pred CCCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccch-hhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEe
Q 041071 1 MESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPV-SIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLV 79 (535)
Q Consensus 1 L~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~-~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~ 79 (535)
|++|++|+|++|.+....|+.|+++++|++|+|++|+++.+|. .+..+++|++|++++|......+..|+++++|++|+
T Consensus 75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~ 154 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 154 (635)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeec
Confidence 5789999999997655556788899999999999999999986 579999999999999875544445689999999999
Q ss_pred ccCCCCCc-cCcccccCCCCCceeecccccCccc
Q 041071 80 LSGCSKIV-KFPETVISVEDLSELFLDRTSITEV 112 (535)
Q Consensus 80 Ls~c~~l~-~~p~~l~~l~~L~~L~L~~~~i~~l 112 (535)
|++|.... ..|..+..+++|++|++++|.++.+
T Consensus 155 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 155 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred cccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 99987544 4688889999999999999987654
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=229.75 Aligned_cols=272 Identities=19% Similarity=0.162 Sum_probs=189.2
Q ss_pred cEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccch-hhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCC
Q 041071 5 KTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPV-SIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGC 83 (535)
Q Consensus 5 ~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~-~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c 83 (535)
...+++++ .++.+|..+ .++|++|++++|.+..++. .+..+++|++|++++|......|..+.++++|++|++++|
T Consensus 34 ~~c~~~~~-~l~~iP~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 34 GICKGSSG-SLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp SEEECCST-TCSSCCTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred eEeeCCCC-Ccccccccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 44566665 355667654 3578888888888887766 6778888888888887655555666777888888888886
Q ss_pred CCCccCcccccCCCCCceeecccccCcccCc--cccCCCCCCEeccccCcCCCcc-CccccCCCCCceeeccCccCCCCc
Q 041071 84 SKIVKFPETVISVEDLSELFLDRTSITEVPS--SIELLTKLQWLNLNDCRSLVRL-PSSINGLTSLKTLNLSGCFKLENV 160 (535)
Q Consensus 84 ~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~l 160 (535)
......+..+..+++|++|++++|.+..+|. .++.+++|+.|++++|..+..+ +..+..+++|++|++++|......
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 5443333347778888888888888887776 6778888888888887544444 456777888888888888655556
Q ss_pred hhhhhccccccEEEecCccccCCCcccc-cCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCC
Q 041071 161 PETLRQIESLEKLDISGTAIRQPLSSIF-LMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCS 239 (535)
Q Consensus 161 p~~l~~l~~L~~L~L~~~~i~~~~~~i~-~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~ 239 (535)
|..++.+++|++|++++|.+..++..+. .+++|+.|++++|......... ++ .......
T Consensus 191 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-------------------l~-~~~~~~~ 250 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE-------------------LS-TGETNSL 250 (353)
T ss_dssp TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------CCCC
T ss_pred HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc-------------------cc-cccccch
Confidence 7778888888888888888776665443 4778888888777654332110 00 1223456
Q ss_pred CCEEecCCCCCCCC---CCCCCCCCCCCCCEEeCCCCcCCCCChhh-cCCCCCcEEeccCCccc
Q 041071 240 LTKLDISDCDLGEG---AIPSSIGDLCSLEELHLSGNNFFTLPASI-YRLSSLLGIDLKECKML 299 (535)
Q Consensus 240 L~~L~Ls~~~l~~~---~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i-~~l~~L~~L~L~~c~~L 299 (535)
++.++++++.+.+. .+|..+..+++|+.|+|++|++..+|..+ ..+++|++|++++|+..
T Consensus 251 l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 77777777766431 24556677788888888888888888764 67888888888888653
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=1.8e-23 Score=219.70 Aligned_cols=245 Identities=23% Similarity=0.245 Sum_probs=205.4
Q ss_pred cCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeeccc
Q 041071 27 CLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDR 106 (535)
Q Consensus 27 ~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~ 106 (535)
..+.++..+..+.++|..+ .++++.|+|++|......+..|.++++|++|+|++|......+..+..+++|++|+|++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 4578888889999999876 37899999999876666667889999999999999876666668889999999999999
Q ss_pred ccCcccCc-cccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchh-hhhccccccEEEecCccccCCC
Q 041071 107 TSITEVPS-SIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPE-TLRQIESLEKLDISGTAIRQPL 184 (535)
Q Consensus 107 ~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~~~ 184 (535)
|.++.++. .+..+++|++|++++|......+..+..+++|++|++++|..+..++. .+..+++|+.|++++|.++.+|
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 99998876 588999999999999876555555788899999999999878877765 5888999999999999999877
Q ss_pred cccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCC
Q 041071 185 SSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCS 264 (535)
Q Consensus 185 ~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~ 264 (535)
.+..+++|+.|++++|... ...|..+..+++|+.|+|++|.+. +..+..+..+++
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~-----------------------~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~ 256 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLS-----------------------AIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQS 256 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCC-----------------------EECTTTTTTCTTCCEEECTTCCCC-EECTTSSTTCTT
T ss_pred -ccCCCcccCEEECCCCccC-----------------------ccChhhhccCccCCEEECCCCcee-EEChhhhcCCCC
Confidence 4778888998888887643 234566888999999999999885 445677888999
Q ss_pred CCEEeCCCCcCCCCChh-hcCCCCCcEEeccCCcc
Q 041071 265 LEELHLSGNNFFTLPAS-IYRLSSLLGIDLKECKM 298 (535)
Q Consensus 265 L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~ 298 (535)
|+.|+|++|++..+|.. +..+++|+.|+|++|+.
T Consensus 257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 99999999999988864 57789999999999875
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=2.1e-23 Score=220.00 Aligned_cols=245 Identities=25% Similarity=0.241 Sum_probs=202.1
Q ss_pred cCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeeccc
Q 041071 27 CLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDR 106 (535)
Q Consensus 27 ~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~ 106 (535)
....++.++..+.++|..+ .++|++|+|++|......|..|.++++|+.|+|++|......+..+..+++|++|+|++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 3567888888899998765 36899999999876666677888999999999999876666678888999999999999
Q ss_pred ccCcccCcc-ccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchh-hhhccccccEEEecCccccCCC
Q 041071 107 TSITEVPSS-IELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPE-TLRQIESLEKLDISGTAIRQPL 184 (535)
Q Consensus 107 ~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~~~ 184 (535)
|.+..++.. ++.+++|++|++++|......+..+..+++|++|++++|..++.++. .+..+++|+.|++++|.+..+|
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 999988764 88899999999999876544445788899999999999888877765 5888999999999999998875
Q ss_pred cccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCC
Q 041071 185 SSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCS 264 (535)
Q Consensus 185 ~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~ 264 (535)
.+..+++|+.|++++|... ...|..+..+++|+.|+|++|.+. +..+..+..+++
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~-----------------------~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~ 267 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFP-----------------------EIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLAS 267 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCS-----------------------EECGGGGTTCTTCCEEECTTSCCC-EECTTTTTTCTT
T ss_pred -cccccccccEEECcCCcCc-----------------------ccCcccccCccCCCEEEeCCCcCc-eECHHHhcCCCC
Confidence 4777888888888877643 334566888899999999999885 445677888999
Q ss_pred CCEEeCCCCcCCCCCh-hhcCCCCCcEEeccCCcc
Q 041071 265 LEELHLSGNNFFTLPA-SIYRLSSLLGIDLKECKM 298 (535)
Q Consensus 265 L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~ 298 (535)
|+.|+|++|++..+|. .+..+++|+.|+|++|+.
T Consensus 268 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 9999999999998886 457789999999999864
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=5.6e-23 Score=223.89 Aligned_cols=261 Identities=21% Similarity=0.256 Sum_probs=213.0
Q ss_pred CCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccC
Q 041071 3 SLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSG 82 (535)
Q Consensus 3 ~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~ 82 (535)
+++.|+++++. ++.+|..+. ++|++|++++|.+..+|. .+++|++|+|++|. ++.+|. .+++|++|++++
T Consensus 41 ~l~~L~ls~n~-L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESG-LTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSC-CSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECS
T ss_pred CCcEEEecCCC-cCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcC
Confidence 58899999986 558887663 899999999999999987 57999999999976 667776 589999999999
Q ss_pred CCCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchh
Q 041071 83 CSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPE 162 (535)
Q Consensus 83 c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~ 162 (535)
|. +..+|. .+++|+.|++++|.++.+|.. +++|++|++++|.. ..+|. .+++|+.|++++| .+..+|
T Consensus 111 N~-l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l-~~l~~---~~~~L~~L~L~~N-~l~~l~- 177 (622)
T 3g06_A 111 NP-LTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL-ASLPA---LPSELCKLWAYNN-QLTSLP- 177 (622)
T ss_dssp CC-CCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSS-CCSCCC-
T ss_pred Cc-CCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcC-CCcCC---ccCCCCEEECCCC-CCCCCc-
Confidence 74 555666 678999999999999999875 48999999999864 45664 3578999999998 466677
Q ss_pred hhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCE
Q 041071 163 TLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTK 242 (535)
Q Consensus 163 ~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~ 242 (535)
..+++|+.|++++|.+..+|.. +++|+.|++++|....... ....++.+++++|.+.. +| ..+++|+.
T Consensus 178 --~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~ 245 (622)
T 3g06_A 178 --MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKE 245 (622)
T ss_dssp --CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCE
T ss_pred --ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcE
Confidence 5578999999999999987764 5899999999998765432 12558888888888775 55 45678999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChhhcCCCCCcEEeccCCcccccCC
Q 041071 243 LDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLKECKMLQNLP 303 (535)
Q Consensus 243 L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 303 (535)
|+|++|.+.. +|. .+++|+.|+|++|.+..+|..+..+++|+.|+|++|+..+.+|
T Consensus 246 L~Ls~N~L~~--lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 246 LMVSGNRLTS--LPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp EECCSSCCSC--CCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred EECCCCCCCc--CCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCH
Confidence 9999998864 666 5688999999999999999889999999999999998655433
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=2e-25 Score=224.34 Aligned_cols=261 Identities=16% Similarity=0.135 Sum_probs=175.8
Q ss_pred cEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccc-hhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCC
Q 041071 5 KTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELP-VSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGC 83 (535)
Q Consensus 5 ~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~-~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c 83 (535)
+.++++.+.....++..+..+++|++|++++|.+..++ ..+..+++|++|++++|.... .+. +..+++|++|++++|
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD-LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE-ETTCTTCCEEECCSS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh-hhhcCCCCEEECcCC
Confidence 34444444332233345556677888888888777665 467778888888887765433 333 677778888888776
Q ss_pred CCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhh
Q 041071 84 SKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPET 163 (535)
Q Consensus 84 ~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~ 163 (535)
. +..++ ..++|++|++++|.+..++.. .+++|+.|++++|......+..+..+++|++|++++|......+..
T Consensus 91 ~-l~~l~----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 91 Y-VQELL----VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp E-EEEEE----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred c-ccccc----CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 4 33332 336777777777777766543 3667777777777665555556666777777777777544444444
Q ss_pred h-hccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCE
Q 041071 164 L-RQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTK 242 (535)
Q Consensus 164 l-~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~ 242 (535)
+ ..+++|++|++++|.++.++.. ..+++|+.|++++|... .+|..+..+++|+.
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~------------------------~l~~~~~~l~~L~~ 218 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLA------------------------FMGPEFQSAAGVTW 218 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCC------------------------EECGGGGGGTTCSE
T ss_pred HhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCC------------------------cchhhhcccCcccE
Confidence 4 3567777777777777765432 24667777777666543 23334667788888
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCC--CCChhhcCCCCCcEEeccCCccccc
Q 041071 243 LDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFF--TLPASIYRLSSLLGIDLKECKMLQN 301 (535)
Q Consensus 243 L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~ 301 (535)
|+|++|.+.. +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++.+|+.++.
T Consensus 219 L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 219 ISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp EECTTSCCCE--ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred EECcCCcccc--hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 8888888864 7777888888888888888887 6777888888888888887776654
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=1.7e-23 Score=208.91 Aligned_cols=243 Identities=21% Similarity=0.234 Sum_probs=138.4
Q ss_pred cEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCc-ccCCCCCCCEEeccCCCCCc--cCcccccCCCCCceeecc
Q 041071 29 QELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPI-TIGNLECLQTLVLSGCSKIV--KFPETVISVEDLSELFLD 105 (535)
Q Consensus 29 ~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~-~l~~l~~L~~L~Ls~c~~l~--~~p~~l~~l~~L~~L~L~ 105 (535)
+.++.+++.++++|..+ .++|++|++++|.. ..+|. .+.++++|++|+|++|.... ..+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCCEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCC--CCCCCEEECCCCcc-CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 45566666666666543 25666666666543 33443 34566666666666654321 124455556667777777
Q ss_pred cccCcccCccccCCCCCCEeccccCcCCCccC-ccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccccC--
Q 041071 106 RTSITEVPSSIELLTKLQWLNLNDCRSLVRLP-SSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQ-- 182 (535)
Q Consensus 106 ~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~-- 182 (535)
+|.+..+|..+..+++|++|++++|......+ ..+..+++|++|++++|......+..+..+++|++|++++|.+..
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 77766666666677777777777665433322 346666777777777765545555566666777777777766654
Q ss_pred CCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCC
Q 041071 183 PLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDL 262 (535)
Q Consensus 183 ~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l 262 (535)
.|..+..+++|+.|++++|... ...|..+..+++|++|+|++|.+.. ..+..+..+
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~-----------------------~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l 222 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLE-----------------------QLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCL 222 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCC-----------------------EECTTTTTTCTTCCEEECTTSCCSB-CCSGGGTTC
T ss_pred chhHHhhCcCCCEEECCCCCcC-----------------------CcCHHHhcCCCCCCEEECCCCccCc-cChhhccCc
Confidence 4555555566666665555432 1223345555566666666665532 122245555
Q ss_pred CCCCEEeCCCCcCCC-CChhhcCCC-CCcEEeccCCcc
Q 041071 263 CSLEELHLSGNNFFT-LPASIYRLS-SLLGIDLKECKM 298 (535)
Q Consensus 263 ~~L~~L~Ls~n~l~~-lp~~i~~l~-~L~~L~L~~c~~ 298 (535)
++|+.|+|++|.+.. .|..+..++ +|++|++++|+.
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 666666666666553 233445553 566666665553
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=3.9e-24 Score=213.63 Aligned_cols=245 Identities=19% Similarity=0.230 Sum_probs=205.9
Q ss_pred cEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchh-hhcCCCccEEeccCCCCCC--ccCcccCCCCCCCEEecc
Q 041071 5 KTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVS-IELMSGLVSLNLKDCRNLT--TLPITIGNLECLQTLVLS 81 (535)
Q Consensus 5 ~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~-i~~l~~L~~L~Ls~~~~l~--~lp~~l~~l~~L~~L~Ls 81 (535)
+.++.+++ .++.+|..+ .++|++|+++++.+..+|.. +..+++|++|++++|.... ..|..+..+++|++|+++
T Consensus 10 ~~l~c~~~-~l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSK-GLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSS-CCSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCC-CcccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 46777776 467778755 57999999999999999876 6899999999999976442 224556679999999999
Q ss_pred CCCCCccCcccccCCCCCceeecccccCcccCc--cccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCC-
Q 041071 82 GCSKIVKFPETVISVEDLSELFLDRTSITEVPS--SIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLE- 158 (535)
Q Consensus 82 ~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~- 158 (535)
+|. +..+|..+..+++|++|++++|.+..++. .+..+++|++|++++|......+..+..+++|++|++++|...+
T Consensus 87 ~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 975 55788889999999999999999998875 78999999999999998877778888999999999999996554
Q ss_pred CchhhhhccccccEEEecCccccCC-CcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCC
Q 041071 159 NVPETLRQIESLEKLDISGTAIRQP-LSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGL 237 (535)
Q Consensus 159 ~lp~~l~~l~~L~~L~L~~~~i~~~-~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l 237 (535)
.+|..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|..... .+..+..+
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------------------~~~~~~~l 222 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-----------------------DTFPYKCL 222 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC-----------------------CSGGGTTC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc-----------------------ChhhccCc
Confidence 5788899999999999999999976 56788899999999999875432 22346778
Q ss_pred CCCCEEecCCCCCCCCCCCCCCCCCC-CCCEEeCCCCcCCC
Q 041071 238 CSLTKLDISDCDLGEGAIPSSIGDLC-SLEELHLSGNNFFT 277 (535)
Q Consensus 238 ~~L~~L~Ls~~~l~~~~lp~~l~~l~-~L~~L~Ls~n~l~~ 277 (535)
++|+.|+|++|.+. +..|..+..++ +|+.|+|++|.+..
T Consensus 223 ~~L~~L~L~~N~l~-~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 223 NSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTCCEEECTTSCCC-BCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred ccCCEeECCCCCCc-ccCHHHHHhhhccCCEEEccCCCeec
Confidence 99999999999985 45677788884 99999999999874
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=2.1e-23 Score=206.11 Aligned_cols=203 Identities=19% Similarity=0.205 Sum_probs=118.9
Q ss_pred CCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCccc-chhhhcCCCccEEeccCCCCCCcc-CcccCCCCCCCEEe
Q 041071 2 ESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKEL-PVSIELMSGLVSLNLKDCRNLTTL-PITIGNLECLQTLV 79 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l-~~~i~~l~~L~~L~Ls~~~~l~~l-p~~l~~l~~L~~L~ 79 (535)
++|++|+|++|......+..++.+++|++|++++|.+..+ +..+..+++|++|++++|..+..+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 3566666666654443445555666666666666666655 445566666666666665533333 44556666666666
Q ss_pred ccCCCCCccCcccccCCCCCceeecccccCcccCcc-ccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCC
Q 041071 80 LSGCSKIVKFPETVISVEDLSELFLDRTSITEVPSS-IELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLE 158 (535)
Q Consensus 80 Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~ 158 (535)
+++|......|..+..+++|++|++++|.+..++.. ++.+++|+.|++++|......+..+..+++|++|++++|....
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 666554444455566666666666666666655543 5566666666666654433333345556666666666665444
Q ss_pred CchhhhhccccccEEEecCccccCCCc-ccccCCCCcEEEcCCCCCC
Q 041071 159 NVPETLRQIESLEKLDISGTAIRQPLS-SIFLMKNLKELSCRGCKGS 204 (535)
Q Consensus 159 ~lp~~l~~l~~L~~L~L~~~~i~~~~~-~i~~l~~L~~L~L~~~~~~ 204 (535)
..|..+..+++|+.|++++|.+..++. .+..+++|+.|++++|...
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 445566666666666666666665553 3555666666666666543
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=1.4e-22 Score=212.91 Aligned_cols=244 Identities=22% Similarity=0.300 Sum_probs=205.2
Q ss_pred CcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccc-hhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccC
Q 041071 4 LKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELP-VSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSG 82 (535)
Q Consensus 4 L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~-~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~ 82 (535)
.+.++.++. .++.+|..+ .++++.|+|++|.+..++ ..+..+++|++|+|++|......+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~-~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRK-NLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSC-CCSSCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCC-CcCcCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 456666664 467788766 589999999999999886 5789999999999999876655567799999999999999
Q ss_pred CCCCccCcccccCCCCCceeecccccCcccCc-cccCCCCCCEeccccCcCCCccCc-cccCCCCCceeeccCccCCCCc
Q 041071 83 CSKIVKFPETVISVEDLSELFLDRTSITEVPS-SIELLTKLQWLNLNDCRSLVRLPS-SINGLTSLKTLNLSGCFKLENV 160 (535)
Q Consensus 83 c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~l 160 (535)
|......+..+..+++|++|++++|.+..++. .+..+++|+.|++++|..+..++. .+.++++|++|++++| .+..+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREI 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccc
Confidence 86554444578999999999999999998876 689999999999999888887775 5788999999999999 56677
Q ss_pred hhhhhccccccEEEecCccccCC-CcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCC
Q 041071 161 PETLRQIESLEKLDISGTAIRQP-LSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCS 239 (535)
Q Consensus 161 p~~l~~l~~L~~L~L~~~~i~~~-~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~ 239 (535)
|. +..+++|+.|++++|.+..+ +..+..+++|+.|++++|... ...+..+..+++
T Consensus 201 ~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-----------------------~~~~~~~~~l~~ 256 (440)
T 3zyj_A 201 PN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-----------------------VIERNAFDNLQS 256 (440)
T ss_dssp CC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-----------------------EECTTSSTTCTT
T ss_pred cc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee-----------------------EEChhhhcCCCC
Confidence 74 78899999999999999976 577889999999999887654 234556888999
Q ss_pred CCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCC
Q 041071 240 LTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFF 276 (535)
Q Consensus 240 L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~ 276 (535)
|+.|+|++|++.. ..+..+..+++|+.|+|++|.+.
T Consensus 257 L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 257 LVEINLAHNNLTL-LPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCEEECTTSCCCC-CCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCEEECCCCCCCc-cChhHhccccCCCEEEcCCCCcc
Confidence 9999999999964 34456788999999999999876
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=1.8e-22 Score=212.96 Aligned_cols=244 Identities=24% Similarity=0.302 Sum_probs=205.2
Q ss_pred CcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCccc-chhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccC
Q 041071 4 LKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKEL-PVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSG 82 (535)
Q Consensus 4 L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l-~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~ 82 (535)
.+.++.++. .++.+|..+ .++|++|+|++|.+..+ +..+..+++|+.|+|++|......|..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~-~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRR-GLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSS-CCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCC-CcCccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 356666664 466788655 57999999999999987 45789999999999999876666668899999999999999
Q ss_pred CCCCccCcccccCCCCCceeecccccCcccCc-cccCCCCCCEeccccCcCCCccCc-cccCCCCCceeeccCccCCCCc
Q 041071 83 CSKIVKFPETVISVEDLSELFLDRTSITEVPS-SIELLTKLQWLNLNDCRSLVRLPS-SINGLTSLKTLNLSGCFKLENV 160 (535)
Q Consensus 83 c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~l 160 (535)
|......+..+..+++|++|++++|.+..++. .+..+++|+.|++++|..+..++. .+..+++|++|++++| .+..+
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDM 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccc
Confidence 87555555668899999999999999998876 689999999999999888888775 5788999999999999 45566
Q ss_pred hhhhhccccccEEEecCccccCC-CcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCC
Q 041071 161 PETLRQIESLEKLDISGTAIRQP-LSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCS 239 (535)
Q Consensus 161 p~~l~~l~~L~~L~L~~~~i~~~-~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~ 239 (535)
| .+..+++|+.|++++|.+..+ +..+..+++|+.|++++|... ...+..+..+++
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-----------------------~~~~~~~~~l~~ 267 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-----------------------LIERNAFDGLAS 267 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC-----------------------EECTTTTTTCTT
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc-----------------------eECHHHhcCCCC
Confidence 5 478899999999999999976 567889999999999888754 234556888999
Q ss_pred CCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCC
Q 041071 240 LTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFF 276 (535)
Q Consensus 240 L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~ 276 (535)
|+.|+|++|.+.. ..+..+..+++|+.|+|++|.+.
T Consensus 268 L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 268 LVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCEEECCSSCCSC-CCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCCcCCc-cChHHhccccCCCEEEccCCCcC
Confidence 9999999999963 34456788999999999999876
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=6.9e-25 Score=219.97 Aligned_cols=248 Identities=21% Similarity=0.182 Sum_probs=189.5
Q ss_pred ccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCC-CccCcccC-------CCCCCCEEeccCCCCCccCccc
Q 041071 21 IVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNL-TTLPITIG-------NLECLQTLVLSGCSKIVKFPET 92 (535)
Q Consensus 21 ~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l-~~lp~~l~-------~l~~L~~L~Ls~c~~l~~~p~~ 92 (535)
+++..++|++|+++++.+ .+|..+... |+.|++++|... ..+|..+. ++++|++|+|++|...+.+|..
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EEccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 345567788888888888 778766544 888888876642 24554443 5888999999888777777876
Q ss_pred c--cCCCCCceeecccccCcccCccccCC-----CCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCC--chhh
Q 041071 93 V--ISVEDLSELFLDRTSITEVPSSIELL-----TKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLEN--VPET 163 (535)
Q Consensus 93 l--~~l~~L~~L~L~~~~i~~lp~~i~~l-----~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~--lp~~ 163 (535)
+ ..+++|++|++++|.+..+|..++.+ ++|++|++++|......|..+..+++|++|++++|...+. ++..
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 6 78889999999999888877777766 8899999998887666667888899999999998865543 3444
Q ss_pred h--hccccccEEEecCccccCCCc----ccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCC
Q 041071 164 L--RQIESLEKLDISGTAIRQPLS----SIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGL 237 (535)
Q Consensus 164 l--~~l~~L~~L~L~~~~i~~~~~----~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l 237 (535)
+ +.+++|++|++++|.+..++. .+..+++|+.|++++|......+ ...+..+
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------------------~~~~~~l 252 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG----------------------APSCDWP 252 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC----------------------CSCCCCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc----------------------hhhhhhc
Confidence 4 788899999999998884432 23467888888888887543210 1224557
Q ss_pred CCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChhhcCCCCCcEEeccCCcc
Q 041071 238 CSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLKECKM 298 (535)
Q Consensus 238 ~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 298 (535)
++|++|+|++|.+. .+|..+. ++|+.|+|++|++..+|. +..+++|++|++++|+.
T Consensus 253 ~~L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp TTCCEEECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred CCCCEEECCCCccC--hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCC
Confidence 88999999999986 4787776 889999999999998886 88899999999999875
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=5.1e-23 Score=203.43 Aligned_cols=221 Identities=22% Similarity=0.246 Sum_probs=110.6
Q ss_pred cEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeeccccc
Q 041071 29 QELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTS 108 (535)
Q Consensus 29 ~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~ 108 (535)
+.++.+++.+..+|..+ .++|+.|++++|......+..+..+++|++|++++|......|..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 45555555666665433 3456666666554333333445555666666666554333334444555555555555554
Q ss_pred -Cccc-CccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccccCCCcc
Q 041071 109 -ITEV-PSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLSS 186 (535)
Q Consensus 109 -i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~~ 186 (535)
+..+ +..+..+++|++|++++|......|..+..+++|++|++++|......+..++.+++|++|++++|.++.++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 170 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE- 170 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH-
Confidence 4444 3345555555555555554443334444555555555555553322222334445555555555554443332
Q ss_pred cccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCC
Q 041071 187 IFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLE 266 (535)
Q Consensus 187 i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~ 266 (535)
..+..+++|+.|++++|.+. +..|..+..+++|+
T Consensus 171 ---------------------------------------------~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~ 204 (285)
T 1ozn_A 171 ---------------------------------------------RAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLM 204 (285)
T ss_dssp ---------------------------------------------TTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCC
T ss_pred ---------------------------------------------HHhcCccccCEEECCCCccc-ccCHhHccCccccc
Confidence 12344455555555555543 22344555555555
Q ss_pred EEeCCCCcCCCCCh-hhcCCCCCcEEeccCCcc
Q 041071 267 ELHLSGNNFFTLPA-SIYRLSSLLGIDLKECKM 298 (535)
Q Consensus 267 ~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~ 298 (535)
.|++++|.+..+|. .+..+++|++|++++|+.
T Consensus 205 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp EEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred EeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 55555555555553 355555555555555544
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=3.7e-23 Score=210.93 Aligned_cols=254 Identities=20% Similarity=0.162 Sum_probs=203.9
Q ss_pred CCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccc-hhhhcCCCccEEeccCCCCCCccCcc-cCCCCCCCEEe
Q 041071 2 ESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELP-VSIELMSGLVSLNLKDCRNLTTLPIT-IGNLECLQTLV 79 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~-~~i~~l~~L~~L~Ls~~~~l~~lp~~-l~~l~~L~~L~ 79 (535)
++|++|++++|......+..++++++|++|++++|.+..++ ..++.+++|++|++++|... .+|.. +.++++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEE
Confidence 47999999999765544557889999999999999999875 46899999999999997654 55544 88899999999
Q ss_pred ccCCCCCccCcc--cccCCCCCceeecccc-cCcccC-ccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCcc
Q 041071 80 LSGCSKIVKFPE--TVISVEDLSELFLDRT-SITEVP-SSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCF 155 (535)
Q Consensus 80 Ls~c~~l~~~p~--~l~~l~~L~~L~L~~~-~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~ 155 (535)
+++|. +..+|. .+..+++|++|++++| .+..++ ..++.+++|+.|++++|......|..+..+++|++|++++|.
T Consensus 131 L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 131 LLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp CTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred CCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 99975 456665 7889999999999998 577764 578999999999999998877778899999999999999995
Q ss_pred CCCCchhh-hhccccccEEEecCccccCCCcc----cccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCccccc
Q 041071 156 KLENVPET-LRQIESLEKLDISGTAIRQPLSS----IFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSF 230 (535)
Q Consensus 156 ~l~~lp~~-l~~l~~L~~L~L~~~~i~~~~~~----i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~l 230 (535)
+..+|.. +..+++|+.|++++|.+...+.. ......++.++++++... ++.+. .+
T Consensus 210 -l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~------------------~~~l~-~l 269 (353)
T 2z80_A 210 -HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT------------------DESLF-QV 269 (353)
T ss_dssp -STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCC------------------HHHHH-HH
T ss_pred -cccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccccc------------------Ccchh-hh
Confidence 5666654 45689999999999999865421 223455666666554322 11111 35
Q ss_pred CCcccCCCCCCEEecCCCCCCCCCCCCC-CCCCCCCCEEeCCCCcCCCCC
Q 041071 231 PSSLSGLCSLTKLDISDCDLGEGAIPSS-IGDLCSLEELHLSGNNFFTLP 279 (535)
Q Consensus 231 p~~l~~l~~L~~L~Ls~~~l~~~~lp~~-l~~l~~L~~L~Ls~n~l~~lp 279 (535)
|..+..+++|+.|+|++|.+.. +|.. +..+++|++|+|++|.+..-+
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLKS--VPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred HHHHhcccCCCEEECCCCCCCc--cCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 6678899999999999999974 7776 489999999999999988544
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=6.3e-24 Score=212.93 Aligned_cols=241 Identities=22% Similarity=0.242 Sum_probs=195.4
Q ss_pred CCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCc--ccchhhh-------cCCCccEEeccCCCCCCccCccc--C
Q 041071 2 ESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIK--ELPVSIE-------LMSGLVSLNLKDCRNLTTLPITI--G 70 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~--~l~~~i~-------~l~~L~~L~Ls~~~~l~~lp~~l--~ 70 (535)
++|+.|++++|.. .+|..+.. .|++|+++++.+. .+|..+. .+++|++|++++|.....+|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 3578888899876 77865533 3999999999886 4666655 79999999999998777888876 8
Q ss_pred CCCCCCEEeccCCCCCccCcccccCC-----CCCceeecccccCcccC-ccccCCCCCCEeccccCcCCCc--cCccc--
Q 041071 71 NLECLQTLVLSGCSKIVKFPETVISV-----EDLSELFLDRTSITEVP-SSIELLTKLQWLNLNDCRSLVR--LPSSI-- 140 (535)
Q Consensus 71 ~l~~L~~L~Ls~c~~l~~~p~~l~~l-----~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~--lp~~i-- 140 (535)
.+++|++|+|++|..... |..+..+ ++|++|++++|.+..++ ..++.+++|++|++++|+..+. ++..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 899999999999875554 8777777 99999999999999887 6899999999999999986654 33344
Q ss_pred cCCCCCceeeccCccCCCCch----hhhhccccccEEEecCccccCCC--cccccCCCCcEEEcCCCCCCCCCCcccccc
Q 041071 141 NGLTSLKTLNLSGCFKLENVP----ETLRQIESLEKLDISGTAIRQPL--SSIFLMKNLKELSCRGCKGSPSSASWFLRF 214 (535)
Q Consensus 141 ~~l~~L~~L~Ls~c~~l~~lp----~~l~~l~~L~~L~L~~~~i~~~~--~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~ 214 (535)
..+++|++|++++|. +..++ ..+..+++|+.|++++|.+...+ ..+..+++|+.|++++|...
T Consensus 198 ~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~---------- 266 (312)
T 1wwl_A 198 LKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK---------- 266 (312)
T ss_dssp TSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS----------
T ss_pred ccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC----------
Confidence 789999999999995 44333 33457899999999999999765 45667899999999998754
Q ss_pred ccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCC
Q 041071 215 PINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFT 277 (535)
Q Consensus 215 ~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~ 277 (535)
.+|..+. ++|++|+|++|.+.. +|. +..+++|+.|+|++|.+..
T Consensus 267 --------------~ip~~~~--~~L~~L~Ls~N~l~~--~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 267 --------------QVPKGLP--AKLSVLDLSYNRLDR--NPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp --------------SCCSSCC--SEEEEEECCSSCCCS--CCC-TTTSCEEEEEECTTCTTTC
T ss_pred --------------hhhhhcc--CCceEEECCCCCCCC--Chh-HhhCCCCCEEeccCCCCCC
Confidence 2344444 789999999999965 466 8889999999999998864
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=2.7e-25 Score=234.65 Aligned_cols=317 Identities=16% Similarity=0.172 Sum_probs=218.1
Q ss_pred CCCCcEEecCCCcCCC----CCCcccCCCCcCcEEEeeccCCccc-chh-hhcCC----CccEEeccCCCCCC----ccC
Q 041071 1 MESLKTLVLSGCSKLK----KFPDIVGGMECLQELRVDGTDIKEL-PVS-IELMS----GLVSLNLKDCRNLT----TLP 66 (535)
Q Consensus 1 L~~L~~L~Ls~~~~l~----~lp~~~~~~~~L~~L~L~~~~l~~l-~~~-i~~l~----~L~~L~Ls~~~~l~----~lp 66 (535)
+++|++|+|++|.... .++..+..+++|++|++++|.+... +.. ...+. +|++|++++|.... .++
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 4689999999997542 3567777889999999999998753 222 23455 79999999987552 567
Q ss_pred cccCCCCCCCEEeccCCCCCccCcccc-----cCCCCCceeecccccCcc-----cCccccCCCCCCEeccccCcCCCcc
Q 041071 67 ITIGNLECLQTLVLSGCSKIVKFPETV-----ISVEDLSELFLDRTSITE-----VPSSIELLTKLQWLNLNDCRSLVRL 136 (535)
Q Consensus 67 ~~l~~l~~L~~L~Ls~c~~l~~~p~~l-----~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~l~~l 136 (535)
..+..+++|++|++++|......+..+ ...++|++|++++|.+.. ++..+..+++|++|++++|......
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 778889999999999987543322222 235679999999998884 4566778899999999998754332
Q ss_pred Ccccc-----CCCCCceeeccCccCCCC----chhhhhccccccEEEecCccccCC------CcccccCCCCcEEEcCCC
Q 041071 137 PSSIN-----GLTSLKTLNLSGCFKLEN----VPETLRQIESLEKLDISGTAIRQP------LSSIFLMKNLKELSCRGC 201 (535)
Q Consensus 137 p~~i~-----~l~~L~~L~Ls~c~~l~~----lp~~l~~l~~L~~L~L~~~~i~~~------~~~i~~l~~L~~L~L~~~ 201 (535)
+..+. ..++|++|++++|..... ++..+..+++|++|++++|.+... +.....+++|+.|++++|
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 22222 356899999999854432 577788889999999999987742 122235788999999998
Q ss_pred CCCCCC----Ccc-ccccccccccccCCCcccccCCccc-----CCCCCCEEecCCCCCCCCC---CCCCCCCCCCCCEE
Q 041071 202 KGSPSS----ASW-FLRFPINLMRWSSNPVALSFPSSLS-----GLCSLTKLDISDCDLGEGA---IPSSIGDLCSLEEL 268 (535)
Q Consensus 202 ~~~~~~----~~~-~~~~~l~~l~l~~n~~~~~lp~~l~-----~l~~L~~L~Ls~~~l~~~~---lp~~l~~l~~L~~L 268 (535)
...... +.. .....++.++++.|.+....+..+. ..++|++|++++|.+.... ++..+..+++|+.|
T Consensus 267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 346 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346 (461)
T ss_dssp CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence 654321 111 1124578888888887643222222 2368899999998875421 34455667888999
Q ss_pred eCCCCcCCCC-Chh----hcC-CCCCcEEeccCCcccc----cCCCC---CCCcceEeccCc
Q 041071 269 HLSGNNFFTL-PAS----IYR-LSSLLGIDLKECKMLQ----NLPRL---PASIHWISLNGC 317 (535)
Q Consensus 269 ~Ls~n~l~~l-p~~----i~~-l~~L~~L~L~~c~~L~----~lp~l---p~sL~~L~~~~C 317 (535)
+|++|.+... +.. +.. .++|++|++++|+.-. .+|.. .++|+.|++.+|
T Consensus 347 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred EccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 9988887643 222 222 6788899998886532 34421 356777777766
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=6e-25 Score=232.02 Aligned_cols=317 Identities=16% Similarity=0.205 Sum_probs=234.6
Q ss_pred CCCCcEEecCCCcCCCCC-CcccCCCCcCcEEEeeccCCc-----ccchhhhcCCCccEEeccCCCCCCccCccc-CCCC
Q 041071 1 MESLKTLVLSGCSKLKKF-PDIVGGMECLQELRVDGTDIK-----ELPVSIELMSGLVSLNLKDCRNLTTLPITI-GNLE 73 (535)
Q Consensus 1 L~~L~~L~Ls~~~~l~~l-p~~~~~~~~L~~L~L~~~~l~-----~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l-~~l~ 73 (535)
+++|++|+|+++...... ...+..+++|++|++++|.+. .++..+..+++|++|++++|......+..+ ..+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 357899999998654332 244678999999999999987 567778899999999999987543222222 2244
Q ss_pred ----CCCEEeccCCCCCc----cCcccccCCCCCceeecccccCccc-Cc----c-ccCCCCCCEeccccCcCCCc----
Q 041071 74 ----CLQTLVLSGCSKIV----KFPETVISVEDLSELFLDRTSITEV-PS----S-IELLTKLQWLNLNDCRSLVR---- 135 (535)
Q Consensus 74 ----~L~~L~Ls~c~~l~----~~p~~l~~l~~L~~L~L~~~~i~~l-p~----~-i~~l~~L~~L~L~~c~~l~~---- 135 (535)
+|++|+|++|.... .++..+..+++|++|++++|.+... +. . ....++|++|++++|.....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999987553 5688899999999999999998732 11 2 23467899999999976542
Q ss_pred cCccccCCCCCceeeccCccCCCCchhhhh-----ccccccEEEecCccccC-----CCcccccCCCCcEEEcCCCCCCC
Q 041071 136 LPSSINGLTSLKTLNLSGCFKLENVPETLR-----QIESLEKLDISGTAIRQ-----PLSSIFLMKNLKELSCRGCKGSP 205 (535)
Q Consensus 136 lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~-----~l~~L~~L~L~~~~i~~-----~~~~i~~l~~L~~L~L~~~~~~~ 205 (535)
++..+..+++|++|++++|......+..+. ..++|++|++++|.+.. ++..+..+++|+.|++++|....
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 455667789999999999964333333333 35699999999999986 46777889999999999997543
Q ss_pred CCC-----ccc-cccccccccccCCCcccc----cCCcccCCCCCCEEecCCCCCCCCC---CCCCC-CCCCCCCEEeCC
Q 041071 206 SSA-----SWF-LRFPINLMRWSSNPVALS----FPSSLSGLCSLTKLDISDCDLGEGA---IPSSI-GDLCSLEELHLS 271 (535)
Q Consensus 206 ~~~-----~~~-~~~~l~~l~l~~n~~~~~----lp~~l~~l~~L~~L~Ls~~~l~~~~---lp~~l-~~l~~L~~L~Ls 271 (535)
... ... ....++.++++.|.++.. ++..+..+++|++|+|++|.+.+.. +...+ ...++|+.|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 211 111 134588999999988764 6777888999999999999874311 11111 123699999999
Q ss_pred CCcCCC-----CChhhcCCCCCcEEeccCCccccc--------CCCCCCCcceEeccCc
Q 041071 272 GNNFFT-----LPASIYRLSSLLGIDLKECKMLQN--------LPRLPASIHWISLNGC 317 (535)
Q Consensus 272 ~n~l~~-----lp~~i~~l~~L~~L~L~~c~~L~~--------lp~lp~sL~~L~~~~C 317 (535)
+|.+.. +|..+..+++|++|++++|+.-.. ++...++|+.|++.+|
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 999884 567788899999999999964322 1112468999999988
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=5.6e-21 Score=208.12 Aligned_cols=238 Identities=26% Similarity=0.300 Sum_probs=181.9
Q ss_pred CcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecc
Q 041071 26 ECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLD 105 (535)
Q Consensus 26 ~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~ 105 (535)
.+++.|+++++.+..+|..+. ++|++|++++|. ++.+|. .+++|++|+|++|. +..+|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCC-CSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCC-CCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECc
Confidence 468999999999999998775 899999999975 567876 47999999999976 566776 78999999999
Q ss_pred cccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccccCCCc
Q 041071 106 RTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLS 185 (535)
Q Consensus 106 ~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~ 185 (535)
+|.++.+|. .+++|+.|++++|. +..+|.. +++|++|++++| .+..+|. .+.+|+.|++++|.++.+|
T Consensus 110 ~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~---~~~~L~~L~L~~N~l~~l~- 177 (622)
T 3g06_A 110 SNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPA---LPSELCKLWAYNNQLTSLP- 177 (622)
T ss_dssp SCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSCCC-
T ss_pred CCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCC---ccCCCCEEECCCCCCCCCc-
Confidence 999999987 57899999999986 4557763 589999999999 5556664 3578999999999999988
Q ss_pred ccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCC
Q 041071 186 SIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSL 265 (535)
Q Consensus 186 ~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L 265 (535)
..+++|+.|++++|....... ....++.+.+++|.+.. +|. .+++|+.|+|++|.+.. +| ..+++|
T Consensus 178 --~~~~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~--lp---~~l~~L 243 (622)
T 3g06_A 178 --MLPSGLQELSVSDNQLASLPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS--LP---VLPSEL 243 (622)
T ss_dssp --CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC--CC---CCCTTC
T ss_pred --ccCCCCcEEECCCCCCCCCCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc--CC---CCCCcC
Confidence 557999999999998664322 12446666677766653 333 23667777777777654 55 345677
Q ss_pred CEEeCCCCcCCCCChhhcCCCCCcEEeccCCcccccCC
Q 041071 266 EELHLSGNNFFTLPASIYRLSSLLGIDLKECKMLQNLP 303 (535)
Q Consensus 266 ~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 303 (535)
+.|+|++|.+..+|. .+++|+.|++++|+. +.+|
T Consensus 244 ~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L-~~lp 277 (622)
T 3g06_A 244 KELMVSGNRLTSLPM---LPSGLLSLSVYRNQL-TRLP 277 (622)
T ss_dssp CEEECCSSCCSCCCC---CCTTCCEEECCSSCC-CSCC
T ss_pred cEEECCCCCCCcCCc---ccccCcEEeCCCCCC-CcCC
Confidence 777777777777775 556777777777743 3444
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=4.4e-22 Score=199.93 Aligned_cols=236 Identities=14% Similarity=0.044 Sum_probs=190.2
Q ss_pred CcEEEeeccCCcccchh-hhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeeccc
Q 041071 28 LQELRVDGTDIKELPVS-IELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDR 106 (535)
Q Consensus 28 L~~L~L~~~~l~~l~~~-i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~ 106 (535)
++.++++++.+.+.+.. +..+++|+.|++++|......|..+..+++|++|+|++|......+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 44555666666655443 4567799999999987666666778999999999999987554443 88999999999999
Q ss_pred ccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccccCCC-c
Q 041071 107 TSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPL-S 185 (535)
Q Consensus 107 ~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~-~ 185 (535)
|.+..++. .++|+.|++++|......+. .+++|++|++++|......+..++.+++|+.|++++|.+...+ .
T Consensus 90 n~l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 90 NYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp SEEEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred CccccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 99988764 48999999999876544333 3788999999999655555667889999999999999999754 3
Q ss_pred cc-ccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCC
Q 041071 186 SI-FLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCS 264 (535)
Q Consensus 186 ~i-~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~ 264 (535)
.+ ..+++|+.|++++|..... +. ...+++|++|+|++|.+.. +|..+..+++
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~------------------------~~-~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~ 215 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDV------------------------KG-QVVFAKLKTLDLSSNKLAF--MGPEFQSAAG 215 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEE------------------------EC-CCCCTTCCEEECCSSCCCE--ECGGGGGGTT
T ss_pred HHhhccCcCCEEECCCCcCccc------------------------cc-ccccccCCEEECCCCcCCc--chhhhcccCc
Confidence 44 4689999999999875421 21 2347899999999999965 7777899999
Q ss_pred CCEEeCCCCcCCCCChhhcCCCCCcEEeccCCccc
Q 041071 265 LEELHLSGNNFFTLPASIYRLSSLLGIDLKECKML 299 (535)
Q Consensus 265 L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L 299 (535)
|+.|+|++|.+..+|..+..+++|+.|++++|+..
T Consensus 216 L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 216 VTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred ccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 99999999999999999999999999999999876
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=3.4e-22 Score=212.66 Aligned_cols=236 Identities=17% Similarity=0.157 Sum_probs=140.7
Q ss_pred CCcCcEEEeeccCCcccc-hhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceee
Q 041071 25 MECLQELRVDGTDIKELP-VSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELF 103 (535)
Q Consensus 25 ~~~L~~L~L~~~~l~~l~-~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~ 103 (535)
+++|++|+|++|.+..++ ..++.+++|++|+|++|......| +..+++|++|+|++|. +..+| ..++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELL----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEE----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCC----CCCCcCEEE
Confidence 336677777776666554 356666677777776655333332 5666666666666653 22222 225666666
Q ss_pred cccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhh-ccccccEEEecCccccC
Q 041071 104 LDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLR-QIESLEKLDISGTAIRQ 182 (535)
Q Consensus 104 L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~-~l~~L~~L~L~~~~i~~ 182 (535)
+++|.+..++.. .+++|+.|++++|......|..+..+++|++|++++|......|..+. .+++|+.|++++|.+..
T Consensus 106 L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 666666655442 345666666666655555555555666666666666644444444443 55666666666666655
Q ss_pred CCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCC
Q 041071 183 PLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDL 262 (535)
Q Consensus 183 ~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l 262 (535)
++. ...+++|+.|++++|... + +|..+..+++|+.|+|++|.+.. +|..+..+
T Consensus 184 ~~~-~~~l~~L~~L~Ls~N~l~-----------------------~-~~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l 236 (487)
T 3oja_A 184 VKG-QVVFAKLKTLDLSSNKLA-----------------------F-MGPEFQSAAGVTWISLRNNKLVL--IEKALRFS 236 (487)
T ss_dssp EEC-CCCCTTCCEEECCSSCCC-----------------------E-ECGGGGGGTTCSEEECTTSCCCE--ECTTCCCC
T ss_pred ccc-cccCCCCCEEECCCCCCC-----------------------C-CCHhHcCCCCccEEEecCCcCcc--cchhhccC
Confidence 433 223555555555555432 2 23335666777777777777753 66667777
Q ss_pred CCCCEEeCCCCcCC--CCChhhcCCCCCcEEeccCC
Q 041071 263 CSLEELHLSGNNFF--TLPASIYRLSSLLGIDLKEC 296 (535)
Q Consensus 263 ~~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c 296 (535)
++|+.|++++|.+. .+|..+..++.|+.|++..+
T Consensus 237 ~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp TTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecccc
Confidence 77777777777776 66666677777777666533
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=4.1e-22 Score=212.05 Aligned_cols=235 Identities=17% Similarity=0.113 Sum_probs=196.0
Q ss_pred CCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEecc
Q 041071 2 ESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLS 81 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls 81 (535)
++|++|+|++|......|..++.+++|++|+|++|.+..++. ++.+++|++|+|++|. +..+|. .++|++|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCEEECc
Confidence 489999999998777667889999999999999999987665 8999999999999975 444443 4899999999
Q ss_pred CCCCCccCcccccCCCCCceeecccccCccc-CccccCCCCCCEeccccCcCCCccCcccc-CCCCCceeeccCccCCCC
Q 041071 82 GCSKIVKFPETVISVEDLSELFLDRTSITEV-PSSIELLTKLQWLNLNDCRSLVRLPSSIN-GLTSLKTLNLSGCFKLEN 159 (535)
Q Consensus 82 ~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~i~-~l~~L~~L~Ls~c~~l~~ 159 (535)
+|......+. .+++|+.|++++|.+..+ |..++.+++|+.|++++|......|..+. .+++|++|+|++|. +..
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~ 183 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYD 183 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccc
Confidence 9876554433 468999999999999976 55789999999999999988777777775 79999999999995 444
Q ss_pred chhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCC
Q 041071 160 VPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCS 239 (535)
Q Consensus 160 lp~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~ 239 (535)
++. ...+++|+.|++++|.++.+|+.+..+++|+.|++++|... .+|..+..+++
T Consensus 184 ~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~------------------------~lp~~l~~l~~ 238 (487)
T 3oja_A 184 VKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV------------------------LIEKALRFSQN 238 (487)
T ss_dssp EEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC------------------------EECTTCCCCTT
T ss_pred ccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc------------------------ccchhhccCCC
Confidence 443 34589999999999999999999999999999999998754 25666788899
Q ss_pred CCEEecCCCCCCCCCCCCCCCCCCCCCEEeCC
Q 041071 240 LTKLDISDCDLGEGAIPSSIGDLCSLEELHLS 271 (535)
Q Consensus 240 L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls 271 (535)
|+.|++++|.+..+.+|..+..++.|+.|+++
T Consensus 239 L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 99999999998645567777777778777775
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=3.1e-20 Score=182.51 Aligned_cols=215 Identities=23% Similarity=0.222 Sum_probs=106.9
Q ss_pred cCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecccccCcccC-c
Q 041071 36 TDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSITEVP-S 114 (535)
Q Consensus 36 ~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp-~ 114 (535)
..+.++|..+ .++|++|++++|......+..+.++++|++|++++|......+..+..+++|++|++++|.+..++ .
T Consensus 17 ~~l~~ip~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 17 LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp SCCSSCCSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCccccCCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh
Confidence 3344444433 134555555544332222224444555555555554333323334444555555555555555443 3
Q ss_pred cccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCC-CchhhhhccccccEEEecCccccCCCc-ccccCCC
Q 041071 115 SIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLE-NVPETLRQIESLEKLDISGTAIRQPLS-SIFLMKN 192 (535)
Q Consensus 115 ~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~-~lp~~l~~l~~L~~L~L~~~~i~~~~~-~i~~l~~ 192 (535)
.+..+++|++|++++|......+..+..+++|++|++++|.... .+|..++.+++|++|++++|.+..++. .+..+++
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh
Confidence 45555556666655554433333345555666666666553322 245555556666666666555554321 2222222
Q ss_pred CcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCC-EEecCCCCCCCCCCCCCCCCCCCCCEEeCC
Q 041071 193 LKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLT-KLDISDCDLGEGAIPSSIGDLCSLEELHLS 271 (535)
Q Consensus 193 L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~-~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls 271 (535)
| +.|. .|++++|.+.. ++.......+|+.|+|+
T Consensus 175 L--------------------------------------------~~l~l~L~ls~n~l~~--~~~~~~~~~~L~~L~L~ 208 (276)
T 2z62_A 175 M--------------------------------------------PLLNLSLDLSLNPMNF--IQPGAFKEIRLKELALD 208 (276)
T ss_dssp C--------------------------------------------TTCCEEEECCSSCCCE--ECTTSSCSCCEEEEECC
T ss_pred c--------------------------------------------cccceeeecCCCcccc--cCccccCCCcccEEECC
Confidence 2 2222 55666665542 33333334466777777
Q ss_pred CCcCCCCChh-hcCCCCCcEEeccCCcc
Q 041071 272 GNNFFTLPAS-IYRLSSLLGIDLKECKM 298 (535)
Q Consensus 272 ~n~l~~lp~~-i~~l~~L~~L~L~~c~~ 298 (535)
+|.+..+|.. +..+++|++|++++|+.
T Consensus 209 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 209 TNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp SSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred CCceeecCHhHhcccccccEEEccCCcc
Confidence 7777666654 35677777777777764
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=5e-20 Score=180.99 Aligned_cols=196 Identities=22% Similarity=0.204 Sum_probs=161.2
Q ss_pred EEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccch-hhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCC
Q 041071 6 TLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPV-SIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCS 84 (535)
Q Consensus 6 ~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~-~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~ 84 (535)
+++.++. .+..+|..+ .++|++|++++|.+..++. .+..+++|++|++++|......+..+.++++|++|++++|.
T Consensus 11 ~~~c~~~-~l~~ip~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMEL-NFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTS-CCSSCCSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCC-CccccCCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3444443 356677755 4789999999999998876 78899999999999987655555678999999999999987
Q ss_pred CCccCcccccCCCCCceeecccccCcccCc-cccCCCCCCEeccccCcCCC-ccCccccCCCCCceeeccCccCCCCchh
Q 041071 85 KIVKFPETVISVEDLSELFLDRTSITEVPS-SIELLTKLQWLNLNDCRSLV-RLPSSINGLTSLKTLNLSGCFKLENVPE 162 (535)
Q Consensus 85 ~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~-~lp~~i~~l~~L~~L~Ls~c~~l~~lp~ 162 (535)
.....+..+..+++|++|++++|.+..++. .++.+++|++|++++|.... .+|..+..+++|++|++++|......+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 766677889999999999999999998776 68999999999999988655 4688899999999999999965555556
Q ss_pred hhhcccccc----EEEecCccccCCCcccccCCCCcEEEcCCCCCC
Q 041071 163 TLRQIESLE----KLDISGTAIRQPLSSIFLMKNLKELSCRGCKGS 204 (535)
Q Consensus 163 ~l~~l~~L~----~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~ 204 (535)
.+..+++|+ .|++++|.+..++.......+|+.|++++|...
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~ 213 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK 213 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCS
T ss_pred HhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCcee
Confidence 777777777 899999999988776666667888888777643
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=8.1e-20 Score=181.07 Aligned_cols=129 Identities=21% Similarity=0.206 Sum_probs=67.2
Q ss_pred cCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCce
Q 041071 22 VGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSE 101 (535)
Q Consensus 22 ~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~ 101 (535)
++++++|++++++++.+..+|..+ .++|+.|++++|......|..+..+++|++|+|++|. +..++.. ..+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCE
Confidence 345666666666666666666554 2566666666655444444555666666666666643 2223322 44555555
Q ss_pred eecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCc
Q 041071 102 LFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGC 154 (535)
Q Consensus 102 L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c 154 (535)
|++++|.+..+|..+..+++|+.|++++|......+..+..+++|++|++++|
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence 55555555555554555555555555554433222233444444444444444
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=3.3e-19 Score=176.70 Aligned_cols=201 Identities=23% Similarity=0.255 Sum_probs=128.0
Q ss_pred hhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecccccCcccCccccCCCCCCE
Q 041071 45 IELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQW 124 (535)
Q Consensus 45 i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 124 (535)
++.+++|+.++++++. ++.+|..+. ++|+.|+|++|......+..+..+++|++|++++|.+..++.. +.+++|+.
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSC-CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCC-CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 5667788888887744 566776553 6788888888766555566777777777787777777766554 66677777
Q ss_pred eccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCC
Q 041071 125 LNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGS 204 (535)
Q Consensus 125 L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~ 204 (535)
|++++|.. ..+|..+..+++|++|++++|......+..+..+++|+.|++++|.+..++.
T Consensus 82 L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~------------------- 141 (290)
T 1p9a_G 82 LDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP------------------- 141 (290)
T ss_dssp EECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-------------------
T ss_pred EECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh-------------------
Confidence 77776643 3556556666666666666663333223445555555555555555544332
Q ss_pred CCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCC-CCCCCCCCCEEeCCCCcCCCCChhhc
Q 041071 205 PSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPS-SIGDLCSLEELHLSGNNFFTLPASIY 283 (535)
Q Consensus 205 ~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~i~ 283 (535)
..+..+++|+.|+|++|.+.. +|. .+..+++|+.|+|++|.+..+|..+.
T Consensus 142 ---------------------------~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~ 192 (290)
T 1p9a_G 142 ---------------------------GLLTPTPKLEKLSLANNNLTE--LPAGLLNGLENLDTLLLQENSLYTIPKGFF 192 (290)
T ss_dssp ---------------------------TTTTTCTTCCEEECTTSCCSC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ---------------------------hhcccccCCCEEECCCCcCCc--cCHHHhcCcCCCCEEECCCCcCCccChhhc
Confidence 224455666666676666643 443 34566777777777777777777666
Q ss_pred CCCCCcEEeccCCcc
Q 041071 284 RLSSLLGIDLKECKM 298 (535)
Q Consensus 284 ~l~~L~~L~L~~c~~ 298 (535)
.+++|+.|++.+|+.
T Consensus 193 ~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 193 GSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTCCCSEEECCSCCB
T ss_pred ccccCCeEEeCCCCc
Confidence 666777777776654
No 73
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=1.6e-22 Score=220.27 Aligned_cols=85 Identities=12% Similarity=0.060 Sum_probs=44.7
Q ss_pred ccCCCCCCEEecCCCC--CCCCCCCCCCCCCCCCCEEeCCCCcCC--CCChhhcCCCCCcEEeccCCccccc-CCC---C
Q 041071 234 LSGLCSLTKLDISDCD--LGEGAIPSSIGDLCSLEELHLSGNNFF--TLPASIYRLSSLLGIDLKECKMLQN-LPR---L 305 (535)
Q Consensus 234 l~~l~~L~~L~Ls~~~--l~~~~lp~~l~~l~~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~-lp~---l 305 (535)
+.++++|+.|++++|. +++..+......+++|+.|+|++|.+. .++..+..+++|++|+|++|+.-.. ++. -
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 4456666666665543 222111111123566777777777665 3455556667777777777762111 121 1
Q ss_pred CCCcceEeccCcc
Q 041071 306 PASIHWISLNGCV 318 (535)
Q Consensus 306 p~sL~~L~~~~C~ 318 (535)
.++|+.|++++|.
T Consensus 512 l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 512 LPSLRYLWVQGYR 524 (592)
T ss_dssp CSSCCEEEEESCB
T ss_pred cCccCeeECcCCc
Confidence 2456666666665
No 74
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=7.6e-21 Score=192.03 Aligned_cols=248 Identities=18% Similarity=0.236 Sum_probs=141.9
Q ss_pred cCcEEEeeccCCcccchhhhcC--CCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCcc-CcccccCCCCCceee
Q 041071 27 CLQELRVDGTDIKELPVSIELM--SGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVK-FPETVISVEDLSELF 103 (535)
Q Consensus 27 ~L~~L~L~~~~l~~l~~~i~~l--~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~-~p~~l~~l~~L~~L~ 103 (535)
.++.++++++.+. +..+..+ ++++.|+++++......+. +..+++|++|++++|..... ++..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 3566666666554 3344555 6677777776654444444 44567777777777654333 566666677777777
Q ss_pred cccccCc-ccCccccCCCCCCEeccccCcCCC--ccCccccCCCCCceeeccCccCCCC--chhhhhccc-cccEEEecC
Q 041071 104 LDRTSIT-EVPSSIELLTKLQWLNLNDCRSLV--RLPSSINGLTSLKTLNLSGCFKLEN--VPETLRQIE-SLEKLDISG 177 (535)
Q Consensus 104 L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~L~Ls~c~~l~~--lp~~l~~l~-~L~~L~L~~ 177 (535)
+++|.+. ..+..++.+++|++|++++|..+. .++..+..+++|++|++++|..+.. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 7777666 455566667777777777764333 2455555667777777777633332 455666666 777777777
Q ss_pred cc--c--cCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCC
Q 041071 178 TA--I--RQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEG 253 (535)
Q Consensus 178 ~~--i--~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~ 253 (535)
|. + ..++..+..+++|+.|++++|...+. ..+..+..+++|++|++++|.....
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~----------------------~~~~~l~~l~~L~~L~l~~~~~~~~ 262 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN----------------------DCFQEFFQLNYLQHLSLSRCYDIIP 262 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG----------------------GGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH----------------------HHHHHHhCCCCCCEeeCCCCCCCCH
Confidence 63 3 23455555666777777666653221 1223355666777777777742111
Q ss_pred CCCCCCCCCCCCCEEeCCCCcCCCCCh-hhcCC-CCCcEEeccCCcccccCC
Q 041071 254 AIPSSIGDLCSLEELHLSGNNFFTLPA-SIYRL-SSLLGIDLKECKMLQNLP 303 (535)
Q Consensus 254 ~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l-~~L~~L~L~~c~~L~~lp 303 (535)
.....+..+++|+.|++++| ++. .+..+ ..|+.|++++|+..+..|
T Consensus 263 ~~~~~l~~~~~L~~L~l~~~----i~~~~~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 263 ETLLELGEIPTLKTLQVFGI----VPDGTLQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTS----SCTTCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred HHHHHHhcCCCCCEEeccCc----cCHHHHHHHHhhCcceEEecccCccccC
Confidence 11124556677777777776 222 22222 224445566655544444
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=2.6e-21 Score=195.48 Aligned_cols=250 Identities=20% Similarity=0.272 Sum_probs=198.2
Q ss_pred CcEEecCCCcCCCCCCcccCCC--CcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCc-cCcccCCCCCCCEEec
Q 041071 4 LKTLVLSGCSKLKKFPDIVGGM--ECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTT-LPITIGNLECLQTLVL 80 (535)
Q Consensus 4 L~~L~Ls~~~~l~~lp~~~~~~--~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~-lp~~l~~l~~L~~L~L 80 (535)
++.|+++++... +..+..+ ++++.|+++++.+...+..+..+++|++|++++|..... +|..+..+++|++|++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 788999987544 4555566 899999999999988777788899999999999875544 7777888999999999
Q ss_pred cCCCCCccCcccccCCCCCceeecccc-cCc--ccCccccCCCCCCEeccccCcCCCc--cCccccCCC-CCceeeccCc
Q 041071 81 SGCSKIVKFPETVISVEDLSELFLDRT-SIT--EVPSSIELLTKLQWLNLNDCRSLVR--LPSSINGLT-SLKTLNLSGC 154 (535)
Q Consensus 81 s~c~~l~~~p~~l~~l~~L~~L~L~~~-~i~--~lp~~i~~l~~L~~L~L~~c~~l~~--lp~~i~~l~-~L~~L~Ls~c 154 (535)
++|......+..+..+++|++|++++| .+. .++..++.+++|++|++++|..+.. ++..+..++ +|++|++++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 999866678888899999999999999 677 3777788999999999999933432 566678899 9999999999
Q ss_pred c-CC--CCchhhhhccccccEEEecCcc-cc-CCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccc
Q 041071 155 F-KL--ENVPETLRQIESLEKLDISGTA-IR-QPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALS 229 (535)
Q Consensus 155 ~-~l--~~lp~~l~~l~~L~~L~L~~~~-i~-~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~ 229 (535)
. .+ ..++..+..+++|+.|++++|. ++ ..+..+..+++|+.|++++|....+.
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~---------------------- 263 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE---------------------- 263 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG----------------------
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH----------------------
Confidence 4 23 5577888899999999999999 55 56778889999999999999733221
Q ss_pred cCCcccCCCCCCEEecCCCCCCCCCCCCCCCCC-CCCCEEeCCCCcCCC-CChhhc
Q 041071 230 FPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDL-CSLEELHLSGNNFFT-LPASIY 283 (535)
Q Consensus 230 lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l-~~L~~L~Ls~n~l~~-lp~~i~ 283 (535)
....+..+++|+.|++++| +.+. .+..+ .+|+.|++++|.++. .|..++
T Consensus 264 ~~~~l~~~~~L~~L~l~~~-i~~~----~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 264 TLLELGEIPTLKTLQVFGI-VPDG----TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GGGGGGGCTTCCEEECTTS-SCTT----CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred HHHHHhcCCCCCEEeccCc-cCHH----HHHHHHhhCcceEEecccCccccCCccc
Confidence 1123667899999999999 5332 23333 347778899999985 444443
No 76
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=1.5e-21 Score=212.50 Aligned_cols=296 Identities=16% Similarity=0.055 Sum_probs=185.1
Q ss_pred CCCCcEEecCCCcCCCC----CCcccCCCCcCcEEEeeccCCc-----ccchhhhcCCCccEEeccCCCCCCccCcc---
Q 041071 1 MESLKTLVLSGCSKLKK----FPDIVGGMECLQELRVDGTDIK-----ELPVSIELMSGLVSLNLKDCRNLTTLPIT--- 68 (535)
Q Consensus 1 L~~L~~L~Ls~~~~l~~----lp~~~~~~~~L~~L~L~~~~l~-----~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~--- 68 (535)
+++|++|+|++|..... ++.....+++|++|+++++.+. .++..+..+++|+.|++++|.. ..+|..
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHhh
Confidence 46777777777754333 2334445666666666666554 3333445566666666666542 223333
Q ss_pred ------------------------cCCCCCCCEEeccCCCCCccCcccccCCCCCceeecccccCc--ccCccccCCCCC
Q 041071 69 ------------------------IGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSIT--EVPSSIELLTKL 122 (535)
Q Consensus 69 ------------------------l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L 122 (535)
+..+++|+.|+++++ ....+|..+..+++|++|++++|.+. .+...++.+++|
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 344455555555542 33445666667777777777777765 233345677777
Q ss_pred CEeccccCcCCCccCccccCCCCCceeeccC----------ccCCCC--chhhhhccccccEEEecCccccC-CCccccc
Q 041071 123 QWLNLNDCRSLVRLPSSINGLTSLKTLNLSG----------CFKLEN--VPETLRQIESLEKLDISGTAIRQ-PLSSIFL 189 (535)
Q Consensus 123 ~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~----------c~~l~~--lp~~l~~l~~L~~L~L~~~~i~~-~~~~i~~ 189 (535)
+.|++.++.....++..+..+++|++|++++ |..+.. ++.....+++|+.|+++.+.++. .+..+..
T Consensus 321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 7777774433333444345677888888884 544432 33445568888888887777763 3334444
Q ss_pred -CCCCcEEEcCC---CCCCCCCCc-------cccccccccccccCCC--cccccCCcc-cCCCCCCEEecCCCCCCCCCC
Q 041071 190 -MKNLKELSCRG---CKGSPSSAS-------WFLRFPINLMRWSSNP--VALSFPSSL-SGLCSLTKLDISDCDLGEGAI 255 (535)
Q Consensus 190 -l~~L~~L~L~~---~~~~~~~~~-------~~~~~~l~~l~l~~n~--~~~~lp~~l-~~l~~L~~L~Ls~~~l~~~~l 255 (535)
+++|+.|++++ |...+..+. ......++.++++.+. ++...+..+ ..+++|+.|+|++|.+++..+
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 88899999974 333332210 1112347777775432 333322223 358899999999999865455
Q ss_pred CCCCCCCCCCCEEeCCCCcCC--CCChhhcCCCCCcEEeccCCcc
Q 041071 256 PSSIGDLCSLEELHLSGNNFF--TLPASIYRLSSLLGIDLKECKM 298 (535)
Q Consensus 256 p~~l~~l~~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c~~ 298 (535)
+..+..+++|+.|+|++|.+. .++..+..+++|++|+|++|+.
T Consensus 481 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred HHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC
Confidence 666678899999999999976 3566667899999999999983
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=9.3e-19 Score=171.45 Aligned_cols=133 Identities=14% Similarity=0.180 Sum_probs=67.4
Q ss_pred cCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeeccc
Q 041071 27 CLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDR 106 (535)
Q Consensus 27 ~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~ 106 (535)
+.+.++++++.++.+|..+. ++|+.|++++|......+..+.++++|++|++++|......+..+..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 45666666666666665442 4566666666553333333455666666666666433222222234455555555555
Q ss_pred ccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccccCCC
Q 041071 107 TSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPL 184 (535)
Q Consensus 107 ~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~ 184 (535)
|.+..++. ..+..+++|++|++++|......+..++.+++|++|++++|.+..++
T Consensus 95 n~l~~~~~-----------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 95 NKLQALPI-----------------------GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp SCCCCCCT-----------------------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CcCCcCCH-----------------------hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence 55544433 23344445555555554333333334455555666666555555443
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=8.8e-19 Score=171.62 Aligned_cols=200 Identities=20% Similarity=0.201 Sum_probs=165.7
Q ss_pred CCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccch-hhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEecc
Q 041071 3 SLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPV-SIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLS 81 (535)
Q Consensus 3 ~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~-~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls 81 (535)
+.++++++++. ++.+|..+ .++|++|+++++.+..++. .+..+++|++|++++|......+..+.++++|++|+++
T Consensus 17 ~~~~l~~~~~~-l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCC-CCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 57889999975 56788765 4789999999999998876 68899999999999977544434446889999999999
Q ss_pred CCCCCccCcccccCCCCCceeecccccCcccCc-cccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCc
Q 041071 82 GCSKIVKFPETVISVEDLSELFLDRTSITEVPS-SIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENV 160 (535)
Q Consensus 82 ~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l 160 (535)
+|......+..+..+++|++|++++|.+..++. .++.+++|++|++++|......+..+..+++|++|++++|......
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 987655555677899999999999999998875 4789999999999998765544455788999999999999554444
Q ss_pred hhhhhccccccEEEecCccccCCCcc-cccCCCCcEEEcCCCCCCC
Q 041071 161 PETLRQIESLEKLDISGTAIRQPLSS-IFLMKNLKELSCRGCKGSP 205 (535)
Q Consensus 161 p~~l~~l~~L~~L~L~~~~i~~~~~~-i~~l~~L~~L~L~~~~~~~ 205 (535)
+..+..+++|+.|++++|.+..++.. +..+++|+.|++++|...-
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 45688999999999999999988764 6779999999999987543
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=3.3e-19 Score=171.28 Aligned_cols=197 Identities=13% Similarity=0.190 Sum_probs=104.6
Q ss_pred CccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCc-ccccCCCCCceeeccc-ccCcccCc-cccCCCCCCEec
Q 041071 50 GLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFP-ETVISVEDLSELFLDR-TSITEVPS-SIELLTKLQWLN 126 (535)
Q Consensus 50 ~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p-~~l~~l~~L~~L~L~~-~~i~~lp~-~i~~l~~L~~L~ 126 (535)
+|++|++++|......+..+..+++|++|++++|..++.++ ..+..+++|++|++++ |.++.++. .+..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44444444433222222234444455555554443232322 2344455555555554 55555442 355556666666
Q ss_pred cccCcCCCccCccccCCCCCc---eeeccCccCCCCchh-hhhcccccc-EEEecCccccCCCcccccCCCCcEEEcCCC
Q 041071 127 LNDCRSLVRLPSSINGLTSLK---TLNLSGCFKLENVPE-TLRQIESLE-KLDISGTAIRQPLSSIFLMKNLKELSCRGC 201 (535)
Q Consensus 127 L~~c~~l~~lp~~i~~l~~L~---~L~Ls~c~~l~~lp~-~l~~l~~L~-~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~ 201 (535)
+++|.. ..+|. +..+++|+ +|++++|..+..+|. .+..+++|+ .|++++|.+..+|.....
T Consensus 112 l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~------------ 177 (239)
T 2xwt_C 112 IFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN------------ 177 (239)
T ss_dssp EEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT------------
T ss_pred CCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC------------
Confidence 665543 23454 55555555 677776644444443 466777777 777777766654432211
Q ss_pred CCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCC-CCCCCCCCCCCCC-CCCCEEeCCCCcCCCCC
Q 041071 202 KGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCD-LGEGAIPSSIGDL-CSLEELHLSGNNFFTLP 279 (535)
Q Consensus 202 ~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~-l~~~~lp~~l~~l-~~L~~L~Ls~n~l~~lp 279 (535)
. ++|+.|+|++|. +.. ..+..+..+ ++|+.|++++|.+..+|
T Consensus 178 ----------------------------------~-~~L~~L~L~~n~~l~~-i~~~~~~~l~~~L~~L~l~~N~l~~l~ 221 (239)
T 2xwt_C 178 ----------------------------------G-TKLDAVYLNKNKYLTV-IDKDAFGGVYSGPSLLDVSQTSVTALP 221 (239)
T ss_dssp ----------------------------------T-CEEEEEECTTCTTCCE-ECTTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred ----------------------------------C-CCCCEEEcCCCCCccc-CCHHHhhccccCCcEEECCCCccccCC
Confidence 1 355556666663 432 223445666 67777777777777777
Q ss_pred hhhcCCCCCcEEeccCCcc
Q 041071 280 ASIYRLSSLLGIDLKECKM 298 (535)
Q Consensus 280 ~~i~~l~~L~~L~L~~c~~ 298 (535)
.. .+++|+.|+++++..
T Consensus 222 ~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 222 SK--GLEHLKELIARNTWT 238 (239)
T ss_dssp CT--TCTTCSEEECTTC--
T ss_pred hh--HhccCceeeccCccC
Confidence 54 567777777777653
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=3.1e-21 Score=199.08 Aligned_cols=249 Identities=17% Similarity=0.175 Sum_probs=165.6
Q ss_pred eccCCcccchhhhcCCCccEEeccCCCCCCc----cCcccCCCCCCCEEeccCCCC---CccCcccc-------cCCCCC
Q 041071 34 DGTDIKELPVSIELMSGLVSLNLKDCRNLTT----LPITIGNLECLQTLVLSGCSK---IVKFPETV-------ISVEDL 99 (535)
Q Consensus 34 ~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~----lp~~l~~l~~L~~L~Ls~c~~---l~~~p~~l-------~~l~~L 99 (535)
....+..++..+..+++|+.|+|++|..... ++..+..+++|++|+|++|.. ...+|..+ ..+++|
T Consensus 17 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L 96 (386)
T 2ca6_A 17 TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 96 (386)
T ss_dssp CSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred CHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcc
Confidence 3344445666666677777777777654433 333355677777777776522 12334333 566777
Q ss_pred ceeecccccCcc-----cCccccCCCCCCEeccccCcCCCc----cCccccCC---------CCCceeeccCccCC-CCc
Q 041071 100 SELFLDRTSITE-----VPSSIELLTKLQWLNLNDCRSLVR----LPSSINGL---------TSLKTLNLSGCFKL-ENV 160 (535)
Q Consensus 100 ~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~l~~----lp~~i~~l---------~~L~~L~Ls~c~~l-~~l 160 (535)
++|+|++|.+.. ++..+..+++|++|++++|..... ++..+..+ ++|++|++++|... ..+
T Consensus 97 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~ 176 (386)
T 2ca6_A 97 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176 (386)
T ss_dssp CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred cEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH
Confidence 777777777764 566677777788888877765322 22223333 78888888888544 344
Q ss_pred h---hhhhccccccEEEecCccccC------CCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccC
Q 041071 161 P---ETLRQIESLEKLDISGTAIRQ------PLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFP 231 (535)
Q Consensus 161 p---~~l~~l~~L~~L~L~~~~i~~------~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp 231 (535)
+ ..+..+++|++|++++|.+.. .+..+..+++|+.|++++|...... ...+|
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-------------------~~~l~ 237 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-------------------SSALA 237 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-------------------HHHHH
T ss_pred HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-------------------HHHHH
Confidence 4 456678888888888888771 2236777888888888877632100 02355
Q ss_pred CcccCCCCCCEEecCCCCCCCC---CCCCCC--CCCCCCCEEeCCCCcCCC-----CChhh-cCCCCCcEEeccCCcccc
Q 041071 232 SSLSGLCSLTKLDISDCDLGEG---AIPSSI--GDLCSLEELHLSGNNFFT-----LPASI-YRLSSLLGIDLKECKMLQ 300 (535)
Q Consensus 232 ~~l~~l~~L~~L~Ls~~~l~~~---~lp~~l--~~l~~L~~L~Ls~n~l~~-----lp~~i-~~l~~L~~L~L~~c~~L~ 300 (535)
..+..+++|+.|+|++|.+... .++..+ +.+++|+.|+|++|.+.. +|..+ ..+++|++|++++|+.-.
T Consensus 238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 5677888999999999988542 134445 448899999999999987 88887 568999999999998644
Q ss_pred c
Q 041071 301 N 301 (535)
Q Consensus 301 ~ 301 (535)
.
T Consensus 318 ~ 318 (386)
T 2ca6_A 318 E 318 (386)
T ss_dssp T
T ss_pred c
Confidence 3
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=6.6e-19 Score=176.14 Aligned_cols=199 Identities=19% Similarity=0.167 Sum_probs=119.7
Q ss_pred CCCCEEeccCCCCCccCcccc--cCCCCCceeecccccCccc-C----ccccCCCCCCEeccccCcCCCccCccccCCCC
Q 041071 73 ECLQTLVLSGCSKIVKFPETV--ISVEDLSELFLDRTSITEV-P----SSIELLTKLQWLNLNDCRSLVRLPSSINGLTS 145 (535)
Q Consensus 73 ~~L~~L~Ls~c~~l~~~p~~l--~~l~~L~~L~L~~~~i~~l-p----~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~ 145 (535)
++|++|++++|...+..|..+ ..+++|++|++++|.+... + ..+..+++|++|++++|......+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 445555555555544555544 5555566666666555531 1 12334566666666666554444455556666
Q ss_pred CceeeccCccCCCC--ch--hhhhccccccEEEecCccccCCCc----ccccCCCCcEEEcCCCCCCCCCCccccccccc
Q 041071 146 LKTLNLSGCFKLEN--VP--ETLRQIESLEKLDISGTAIRQPLS----SIFLMKNLKELSCRGCKGSPSSASWFLRFPIN 217 (535)
Q Consensus 146 L~~L~Ls~c~~l~~--lp--~~l~~l~~L~~L~L~~~~i~~~~~----~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~ 217 (535)
|++|++++|..... ++ ..++.+++|++|++++|.++.++. .+..+++|++|++++|.....
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~----------- 239 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT----------- 239 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC-----------
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc-----------
Confidence 66666666643221 11 112455666666666666654433 134556666666666654322
Q ss_pred cccccCCCcccccCCcccC---CCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChhhcCCCCCcEEecc
Q 041071 218 LMRWSSNPVALSFPSSLSG---LCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLK 294 (535)
Q Consensus 218 ~l~l~~n~~~~~lp~~l~~---l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~ 294 (535)
.|..+.. +++|++|+|++|.+.. +|..+. ++|+.|+|++|++..+|. +..+++|+.|+++
T Consensus 240 ------------~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~ 302 (310)
T 4glp_A 240 ------------VNPSAPRCMWSSALNSLNLSFAGLEQ--VPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLD 302 (310)
T ss_dssp ------------CCSCCSSCCCCTTCCCEECCSSCCCS--CCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECS
T ss_pred ------------chhhHHhccCcCcCCEEECCCCCCCc--hhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECc
Confidence 2222333 3688888888888863 777664 789999999999888875 6788899999999
Q ss_pred CCccc
Q 041071 295 ECKML 299 (535)
Q Consensus 295 ~c~~L 299 (535)
+|+..
T Consensus 303 ~N~l~ 307 (310)
T 4glp_A 303 GNPFL 307 (310)
T ss_dssp STTTS
T ss_pred CCCCC
Confidence 88753
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=4.1e-19 Score=177.53 Aligned_cols=146 Identities=20% Similarity=0.299 Sum_probs=91.2
Q ss_pred hcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEe
Q 041071 46 ELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWL 125 (535)
Q Consensus 46 ~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 125 (535)
..+++|+.|++++|. +..+| .+..+++|++|++++|. +..++. +..+++|++|++++|.+..++ .+..+++|+.|
T Consensus 38 ~~l~~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 38 ADLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred HHcCCcCEEEeeCCC-ccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 455666666666653 33444 35566666666666653 334444 666667777777777776664 56777777777
Q ss_pred ccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCC
Q 041071 126 NLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGC 201 (535)
Q Consensus 126 ~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~ 201 (535)
++++|.. ..++. +..+++|++|++++|. +..++. ++.+++|+.|++++|.+..++. +..+++|+.|++++|
T Consensus 113 ~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 113 DLTSTQI-TDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDN 183 (308)
T ss_dssp ECTTSCC-CCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred ECCCCCC-CCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCC
Confidence 7777664 33443 6777888888888774 444444 7778888888888887765544 444444444444443
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=6.1e-19 Score=169.45 Aligned_cols=196 Identities=16% Similarity=0.184 Sum_probs=126.7
Q ss_pred CCceeecccccCcccCc-cccCCCCCCEeccccCcCCCccCc-cccCCCCCceeeccCccCCCCch-hhhhccccccEEE
Q 041071 98 DLSELFLDRTSITEVPS-SIELLTKLQWLNLNDCRSLVRLPS-SINGLTSLKTLNLSGCFKLENVP-ETLRQIESLEKLD 174 (535)
Q Consensus 98 ~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~ 174 (535)
+|++|++++|.++.++. .++.+++|+.|++++|..+..++. .+.++++|++|++++|..+..++ ..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555555554 455566666666666543333332 45556666666666522344443 3455666666666
Q ss_pred ecCccccCCCcccccCCCCc---EEEcCCC-CCCCCCCccccccccccccccCCCcccccCCcccCCCCCC-EEecCCCC
Q 041071 175 ISGTAIRQPLSSIFLMKNLK---ELSCRGC-KGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLT-KLDISDCD 249 (535)
Q Consensus 175 L~~~~i~~~~~~i~~l~~L~---~L~L~~~-~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~-~L~Ls~~~ 249 (535)
+++|.++.+|. +..+++|+ .|++++| ... ...+..+..+++|+ .|++++|.
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~-----------------------~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMT-----------------------SIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCC-----------------------EECTTTTTTTBSSEEEEECCSCC
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchh-----------------------hcCcccccchhcceeEEEcCCCC
Confidence 66666666555 55566665 6666665 321 12233477888999 99999999
Q ss_pred CCCCCCCCCCCCCCCCCEEeCCCCc-CCCCCh-hhcCC-CCCcEEeccCCcccccCCC-CCCCcceEeccCcccc
Q 041071 250 LGEGAIPSSIGDLCSLEELHLSGNN-FFTLPA-SIYRL-SSLLGIDLKECKMLQNLPR-LPASIHWISLNGCVSL 320 (535)
Q Consensus 250 l~~~~lp~~l~~l~~L~~L~Ls~n~-l~~lp~-~i~~l-~~L~~L~L~~c~~L~~lp~-lp~sL~~L~~~~C~sL 320 (535)
+.. +|......++|+.|++++|. +..+|. .+..+ ++|+.|++++|+. +.+|. ..++++.|++.++.+|
T Consensus 168 l~~--i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l-~~l~~~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 168 FTS--VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-TALPSKGLEHLKELIARNTWTL 239 (239)
T ss_dssp CCE--ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC-CCCCCTTCTTCSEEECTTC---
T ss_pred Ccc--cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc-ccCChhHhccCceeeccCccCC
Confidence 863 66654444899999999995 998864 57788 9999999999875 55664 4678888888887654
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=3.4e-19 Score=174.79 Aligned_cols=207 Identities=16% Similarity=0.141 Sum_probs=110.7
Q ss_pred hcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecccccCcccCcc-ccCCCCCCE
Q 041071 46 ELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSITEVPSS-IELLTKLQW 124 (535)
Q Consensus 46 ~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~ 124 (535)
..+++|+.|++++|. +..++. +..+++|++|++++|.. ..+ ..+..+++|++|++++|.+..++.. ++.+++|++
T Consensus 38 ~~l~~L~~L~l~~~~-i~~~~~-l~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSD-IKSVQG-IQYLPNVRYLALGGNKL-HDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSC-CCCCTT-GGGCTTCCEEECTTSCC-CCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCC-cccccc-cccCCCCcEEECCCCCC-CCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 344445555554433 222332 44445555555554432 222 2344455555555555555544432 455555555
Q ss_pred eccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccccCCCcc-cccCCCCcEEEcCCCCC
Q 041071 125 LNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLSS-IFLMKNLKELSCRGCKG 203 (535)
Q Consensus 125 L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~~-i~~l~~L~~L~L~~~~~ 203 (535)
|++++|......+..+..+++|++|++++|......+..++.+++|+.|++++|.++.++.. +..+++|+.|++++|..
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 55555554433333445555666666665533322233345566666666666666655433 35566666666666543
Q ss_pred CCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCC-CCChhh
Q 041071 204 SPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFF-TLPASI 282 (535)
Q Consensus 204 ~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i 282 (535)
.. ..+..+..+++|+.|++++|.+. +.+++|+.|++++|.+. .+|.++
T Consensus 194 ~~-----------------------~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 194 KS-----------------------VPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp SC-----------------------CCTTTTTTCTTCCEEECCSSCBC--------CCTTTTHHHHHHHHHTGGGBBCTT
T ss_pred Cc-----------------------cCHHHHhCCcCCCEEEccCCCcc--------ccCcHHHHHHHHHHhCCCcccCcc
Confidence 32 22334566778888888888663 33567788888888776 677776
Q ss_pred cCCCC
Q 041071 283 YRLSS 287 (535)
Q Consensus 283 ~~l~~ 287 (535)
+.++.
T Consensus 243 ~~~~~ 247 (272)
T 3rfs_A 243 GSVAP 247 (272)
T ss_dssp SCBCG
T ss_pred cccCC
Confidence 65544
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=2.7e-19 Score=178.97 Aligned_cols=199 Identities=19% Similarity=0.163 Sum_probs=148.5
Q ss_pred CCCcEEecCCCcCCCCCCccc--CCCCcCcEEEeeccCCccc-c----hhhhcCCCccEEeccCCCCCCccCcccCCCCC
Q 041071 2 ESLKTLVLSGCSKLKKFPDIV--GGMECLQELRVDGTDIKEL-P----VSIELMSGLVSLNLKDCRNLTTLPITIGNLEC 74 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp~~~--~~~~~L~~L~L~~~~l~~l-~----~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~ 74 (535)
++|++|+|++|...+..|..+ +.+++|++|++++|.+... + ..+..+++|++|++++|......|..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 468888888887777777665 7888888888888887742 1 23456888888888888776666677888888
Q ss_pred CCEEeccCCCCCcc--C--cccccCCCCCceeecccccCcccCcc----ccCCCCCCEeccccCcCCCccCccccCC---
Q 041071 75 LQTLVLSGCSKIVK--F--PETVISVEDLSELFLDRTSITEVPSS----IELLTKLQWLNLNDCRSLVRLPSSINGL--- 143 (535)
Q Consensus 75 L~~L~Ls~c~~l~~--~--p~~l~~l~~L~~L~L~~~~i~~lp~~----i~~l~~L~~L~L~~c~~l~~lp~~i~~l--- 143 (535)
|++|+|++|...+. + +..+..+++|++|++++|.++.++.. ++.+++|++|++++|......|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 88888888765432 2 22346788888888888888766542 4677888888888887766667666665
Q ss_pred CCCceeeccCccCCCCchhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCC
Q 041071 144 TSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGS 204 (535)
Q Consensus 144 ~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~ 204 (535)
++|++|++++|. +..+|..+. ++|+.|++++|.++.+|. +..+++|+.|++++|...
T Consensus 251 ~~L~~L~Ls~N~-l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 251 SALNSLNLSFAG-LEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TTCCCEECCSSC-CCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred CcCCEEECCCCC-CCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 688888888884 446776654 688888888888887755 677788888888887654
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=1.1e-18 Score=171.19 Aligned_cols=208 Identities=16% Similarity=0.182 Sum_probs=163.3
Q ss_pred CCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCcee
Q 041071 23 GGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSEL 102 (535)
Q Consensus 23 ~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L 102 (535)
..+++|+.|+++++.+..++ .+..+++|++|++++|.. ..++ .+..+++|++|++++|......+..+..+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKL-HDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCC-CCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCC-CCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 36888999999998888776 478899999999998764 4444 57889999999999986655555667889999999
Q ss_pred ecccccCcccCcc-ccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCcccc
Q 041071 103 FLDRTSITEVPSS-IELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIR 181 (535)
Q Consensus 103 ~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~ 181 (535)
++++|.+..++.. ++.+++|++|++++|......+..+..+++|++|++++|......+..++.+++|+.|++++|.+.
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 9999999987764 688999999999998765545555688999999999999655545556788999999999999999
Q ss_pred CCCcc-cccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCC
Q 041071 182 QPLSS-IFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCS 239 (535)
Q Consensus 182 ~~~~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~ 239 (535)
.+++. +..+++|+.|++++|...... ..++.+++..|.+.+.+|.+++.++.
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~~------~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCTC------PGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCT------TTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ccCHHHHhCCcCCCEEEccCCCccccC------cHHHHHHHHHHhCCCcccCcccccCC
Confidence 77754 678999999999998754332 23666777778888888877665543
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=1.2e-18 Score=174.28 Aligned_cols=189 Identities=20% Similarity=0.325 Sum_probs=131.9
Q ss_pred CCCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEecc
Q 041071 2 ESLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLS 81 (535)
Q Consensus 2 ~~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls 81 (535)
++|+.|++++|. +..+|. +..+++|++|++++|.+..++. +..+++|++|++++|. +..++ .+..+++|++|+++
T Consensus 41 ~~L~~L~l~~~~-i~~l~~-~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 41 DGITTLSAFGTG-VTTIEG-VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECT
T ss_pred CCcCEEEeeCCC-ccCchh-hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECC
Confidence 467778887774 344553 4577788888888877777766 7777788888887765 44444 36777788888887
Q ss_pred CCCCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCch
Q 041071 82 GCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVP 161 (535)
Q Consensus 82 ~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp 161 (535)
+|. +..++. +..+++|++|++++|.+..++. ++.+++|+.|++++|... .++. +..+++|+.|++++|. +..++
T Consensus 116 ~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~-l~~~~ 189 (308)
T 1h6u_A 116 STQ-ITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNK-ISDIS 189 (308)
T ss_dssp TSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSC-CCCCG
T ss_pred CCC-CCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCC-CChh-hcCCCCCCEEECCCCc-cCcCh
Confidence 765 334443 6777778888888877777665 777777888888777543 3444 6677778888887774 44444
Q ss_pred hhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCC
Q 041071 162 ETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKG 203 (535)
Q Consensus 162 ~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~ 203 (535)
. +..+++|+.|++++|.+..+++ +..+++|+.|++++|..
T Consensus 190 ~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 190 P-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp G-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEE
T ss_pred h-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCee
Confidence 3 6777777888888777776663 67777777777777654
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.79 E-value=1.3e-20 Score=192.83 Aligned_cols=252 Identities=13% Similarity=0.073 Sum_probs=167.1
Q ss_pred EEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccc-----hhhhcCC-CccEEeccCCCCCCccCcccCCC-----CC
Q 041071 6 TLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELP-----VSIELMS-GLVSLNLKDCRNLTTLPITIGNL-----EC 74 (535)
Q Consensus 6 ~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~-----~~i~~l~-~L~~L~Ls~~~~l~~lp~~l~~l-----~~ 74 (535)
+++|+++...+.+|.++...++|++|+|++|.+..++ ..+..++ +|++|++++|......+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 5688888877788888877777999999999998776 5677888 89999999987655545445543 89
Q ss_pred CCEEeccCCCCCccCccc----ccCC-CCCceeecccccCcccCc-----cccC-CCCCCEeccccCcCCC----ccCcc
Q 041071 75 LQTLVLSGCSKIVKFPET----VISV-EDLSELFLDRTSITEVPS-----SIEL-LTKLQWLNLNDCRSLV----RLPSS 139 (535)
Q Consensus 75 L~~L~Ls~c~~l~~~p~~----l~~l-~~L~~L~L~~~~i~~lp~-----~i~~-l~~L~~L~L~~c~~l~----~lp~~ 139 (535)
|++|+|++|......+.. +..+ ++|++|++++|.+...+. .+.. .++|++|++++|.... .++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999998755555543 3344 789999999988886553 2344 3588888888876553 33334
Q ss_pred ccCCC-CCceeeccCccCCCCchhhh----hcc-ccccEEEecCccccC-----CCccccc-CCCCcEEEcCCCCCCCCC
Q 041071 140 INGLT-SLKTLNLSGCFKLENVPETL----RQI-ESLEKLDISGTAIRQ-----PLSSIFL-MKNLKELSCRGCKGSPSS 207 (535)
Q Consensus 140 i~~l~-~L~~L~Ls~c~~l~~lp~~l----~~l-~~L~~L~L~~~~i~~-----~~~~i~~-l~~L~~L~L~~~~~~~~~ 207 (535)
+..++ +|++|++++|......+..+ ..+ ++|++|++++|.+.. ++..+.. .++|+.|++++|......
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 44554 78888888885544444433 334 588888888888775 4444544 347777777776644321
Q ss_pred CccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCC------CCCCCCCCCCCCCCEEeCCCCcCC
Q 041071 208 ASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGE------GAIPSSIGDLCSLEELHLSGNNFF 276 (535)
Q Consensus 208 ~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~------~~lp~~l~~l~~L~~L~Ls~n~l~ 276 (535)
.. .+...+..+++|+.|+|++|.+.. ..++..+..+++|+.|++++|.+.
T Consensus 242 ~~-------------------~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 242 LE-------------------NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HH-------------------HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HH-------------------HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 10 112234556667777777776321 012334556666777777777665
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=5.7e-18 Score=172.32 Aligned_cols=223 Identities=14% Similarity=0.181 Sum_probs=124.5
Q ss_pred cEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCc-ccCCCCCCCEEeccCCCCCccCcc-cccCCCCCce-eecc
Q 041071 29 QELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPI-TIGNLECLQTLVLSGCSKIVKFPE-TVISVEDLSE-LFLD 105 (535)
Q Consensus 29 ~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~-~l~~l~~L~~L~Ls~c~~l~~~p~-~l~~l~~L~~-L~L~ 105 (535)
+.++.++++++++|..+ .++++.|+|++|. ++.+|. .|.++++|++|+|++|...+.+|. .+.+++++++ +.++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45555666666666554 3456666666644 344443 456666666666666655554443 3455555543 4445
Q ss_pred cccCcccC-ccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchh-hhhcc-ccccEEEecCccccC
Q 041071 106 RTSITEVP-SSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPE-TLRQI-ESLEKLDISGTAIRQ 182 (535)
Q Consensus 106 ~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l-~~L~~L~L~~~~i~~ 182 (535)
+|.+..++ ..++.+++|++|++++|......+..+....++..|++.++..+..++. .+..+ ..++.|++++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 56666664 3466677777777776654433333344455666677766655555543 23333 346667777776665
Q ss_pred CCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCC-CCCCC
Q 041071 183 PLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIP-SSIGD 261 (535)
Q Consensus 183 ~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp-~~l~~ 261 (535)
++....... +|++|++++++... .+| ..|..
T Consensus 169 i~~~~f~~~-----------------------------------------------~L~~l~l~~~n~l~-~i~~~~f~~ 200 (350)
T 4ay9_X 169 IHNSAFNGT-----------------------------------------------QLDELNLSDNNNLE-ELPNDVFHG 200 (350)
T ss_dssp ECTTSSTTE-----------------------------------------------EEEEEECTTCTTCC-CCCTTTTTT
T ss_pred CChhhcccc-----------------------------------------------chhHHhhccCCccc-CCCHHHhcc
Confidence 554433333 45555554433222 133 34566
Q ss_pred CCCCCEEeCCCCcCCCCChhhcCCCCCcEEeccCCcccccCCC
Q 041071 262 LCSLEELHLSGNNFFTLPASIYRLSSLLGIDLKECKMLQNLPR 304 (535)
Q Consensus 262 l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 304 (535)
+++|+.|+|++|+++.+|.. .+..|+.|.+.+|..++.+|.
T Consensus 201 l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 201 ASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp EECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC
T ss_pred CcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC
Confidence 66666666666666666642 355666666666666666654
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.76 E-value=1.1e-19 Score=187.46 Aligned_cols=244 Identities=17% Similarity=0.156 Sum_probs=186.0
Q ss_pred CCCcccCCCCcCcEEEeeccCCcc-----cchhhhcCCCccEEeccCCCCC---CccCccc-------CCCCCCCEEecc
Q 041071 17 KFPDIVGGMECLQELRVDGTDIKE-----LPVSIELMSGLVSLNLKDCRNL---TTLPITI-------GNLECLQTLVLS 81 (535)
Q Consensus 17 ~lp~~~~~~~~L~~L~L~~~~l~~-----l~~~i~~l~~L~~L~Ls~~~~l---~~lp~~l-------~~l~~L~~L~Ls 81 (535)
.++..+..+++|++|+|++|.+.. ++..+..+++|++|+|++|..- ..+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 466777788999999999998874 4445778999999999987322 2334333 678999999999
Q ss_pred CCCCCc----cCcccccCCCCCceeecccccCcc-----cCccccCC---------CCCCEeccccCcCC-CccC---cc
Q 041071 82 GCSKIV----KFPETVISVEDLSELFLDRTSITE-----VPSSIELL---------TKLQWLNLNDCRSL-VRLP---SS 139 (535)
Q Consensus 82 ~c~~l~----~~p~~l~~l~~L~~L~L~~~~i~~-----lp~~i~~l---------~~L~~L~L~~c~~l-~~lp---~~ 139 (535)
+|.... .+|..+..+++|++|+|++|.+.. ++..+..+ ++|++|++++|... ..++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 987665 477788899999999999999873 33344445 89999999998765 3444 45
Q ss_pred ccCCCCCceeeccCccCCC-----CchhhhhccccccEEEecCccc-----cCCCcccccCCCCcEEEcCCCCCCCCCCc
Q 041071 140 INGLTSLKTLNLSGCFKLE-----NVPETLRQIESLEKLDISGTAI-----RQPLSSIFLMKNLKELSCRGCKGSPSSAS 209 (535)
Q Consensus 140 i~~l~~L~~L~Ls~c~~l~-----~lp~~l~~l~~L~~L~L~~~~i-----~~~~~~i~~l~~L~~L~L~~~~~~~~~~~ 209 (535)
+..+++|++|++++|.... ..+..+..+++|+.|++++|.+ ..++..+..+++|+.|++++|.......
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~- 261 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA- 261 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH-
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH-
Confidence 6678999999999995431 2333788899999999999998 4567788899999999999987542210
Q ss_pred cccccccccccccCCCcccccCCcc--cCCCCCCEEecCCCCCCCC---CCCCCC-CCCCCCCEEeCCCCcCCCCC
Q 041071 210 WFLRFPINLMRWSSNPVALSFPSSL--SGLCSLTKLDISDCDLGEG---AIPSSI-GDLCSLEELHLSGNNFFTLP 279 (535)
Q Consensus 210 ~~~~~~l~~l~l~~n~~~~~lp~~l--~~l~~L~~L~Ls~~~l~~~---~lp~~l-~~l~~L~~L~Ls~n~l~~lp 279 (535)
..++..+ ..+++|+.|+|++|.+... .+|..+ ..+++|+.|+|++|.+....
T Consensus 262 ------------------~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 262 ------------------AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp ------------------HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ------------------HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 0133445 3488999999999998642 366666 56899999999999998665
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=1.9e-17 Score=168.46 Aligned_cols=236 Identities=19% Similarity=0.277 Sum_probs=174.1
Q ss_pred cEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccch-hhhcCCCccEEeccCCCCCCccCc-ccCCCCCCCEEeccC
Q 041071 5 KTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPV-SIELMSGLVSLNLKDCRNLTTLPI-TIGNLECLQTLVLSG 82 (535)
Q Consensus 5 ~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~-~i~~l~~L~~L~Ls~~~~l~~lp~-~l~~l~~L~~L~Ls~ 82 (535)
++++.+++ .++.+|..+ .+++++|+|++|+|+.+|. .+..+++|++|+|++|...+.+|. .|.++++|+.+...+
T Consensus 12 ~~v~C~~~-~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQES-KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEEST-TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCC-CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56677765 467888765 5799999999999999987 589999999999999988787764 578899988766555
Q ss_pred CCCCccC-cccccCCCCCceeecccccCcccCc-cccCCCCCCEeccccCcCCCccCc-cccCC-CCCceeeccCccCCC
Q 041071 83 CSKIVKF-PETVISVEDLSELFLDRTSITEVPS-SIELLTKLQWLNLNDCRSLVRLPS-SINGL-TSLKTLNLSGCFKLE 158 (535)
Q Consensus 83 c~~l~~~-p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~-~i~~l-~~L~~L~Ls~c~~l~ 158 (535)
++.+..+ |..+..+++|++|++++|.+..++. .+....++..|++.++..+..++. .+..+ ..++.|++++| .++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCC
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-ccc
Confidence 4555555 6778999999999999999998876 355677888999988777777764 34444 46899999998 567
Q ss_pred CchhhhhccccccEEEecC-ccccCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCC
Q 041071 159 NVPETLRQIESLEKLDISG-TAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGL 237 (535)
Q Consensus 159 ~lp~~l~~l~~L~~L~L~~-~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l 237 (535)
.++.......+|++|++.+ |.++.+|.. .+.++
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~----------------------------------------------~f~~l 201 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPND----------------------------------------------VFHGA 201 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTT----------------------------------------------TTTTE
T ss_pred CCChhhccccchhHHhhccCCcccCCCHH----------------------------------------------HhccC
Confidence 7777766778899999875 556555432 24555
Q ss_pred CCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCC-cCCCCChhhcCCCCCcEEeccC
Q 041071 238 CSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGN-NFFTLPASIYRLSSLLGIDLKE 295 (535)
Q Consensus 238 ~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n-~l~~lp~~i~~l~~L~~L~L~~ 295 (535)
++|+.|+|++|+++. +|. ..+.+|+.|.+.++ ++..+| .+..+++|+.+++.+
T Consensus 202 ~~L~~LdLs~N~l~~--lp~--~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 202 SGPVILDISRTRIHS--LPS--YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp ECCSEEECTTSCCCC--CCS--SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred cccchhhcCCCCcCc--cCh--hhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 666667777776654 554 22456666655443 456777 467777888877765
No 92
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=2.7e-20 Score=202.65 Aligned_cols=317 Identities=17% Similarity=0.188 Sum_probs=197.6
Q ss_pred CCCCcEEecCCCcCCCC--CCcccCCCCcCcEEEeeccCCcc-----cchhhhcCCCccEEeccCCC-CC--CccCcccC
Q 041071 1 MESLKTLVLSGCSKLKK--FPDIVGGMECLQELRVDGTDIKE-----LPVSIELMSGLVSLNLKDCR-NL--TTLPITIG 70 (535)
Q Consensus 1 L~~L~~L~Ls~~~~l~~--lp~~~~~~~~L~~L~L~~~~l~~-----l~~~i~~l~~L~~L~Ls~~~-~l--~~lp~~l~ 70 (535)
+++|++|+|++|...+. ++.....+++|++|++++|.+.. ++.....+++|+.|++++|. .. ..++..+.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 47889999988855443 55566678899999998877653 33333467788999988875 11 11222234
Q ss_pred CCCCCCEEeccCCCCCccCcccccCCCCCceeeccccc-------------------------------CcccCccccCC
Q 041071 71 NLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTS-------------------------------ITEVPSSIELL 119 (535)
Q Consensus 71 ~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~-------------------------------i~~lp~~i~~l 119 (535)
.+++|++|++++|..+..+|..+..+++|++|+++.+. ...++..+..+
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~ 288 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHH
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhh
Confidence 46888888888886666677777777777777754331 11234444467
Q ss_pred CCCCEeccccCcCCCc-cCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecC---------ccccC--CCccc
Q 041071 120 TKLQWLNLNDCRSLVR-LPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISG---------TAIRQ--PLSSI 187 (535)
Q Consensus 120 ~~L~~L~L~~c~~l~~-lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~---------~~i~~--~~~~i 187 (535)
++|+.|++++|..... ++..+..+++|++|++++|.....++.....+++|++|++.+ +.++. +....
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~ 368 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence 8899999998873221 223355788999999988822223344445688899998843 23331 11122
Q ss_pred ccCCCCcEEEcCCCCCCCCCCccc--ccccccccccc--C----CCcc-----cccCCcccCCCCCCEEecCCCCCCCCC
Q 041071 188 FLMKNLKELSCRGCKGSPSSASWF--LRFPINLMRWS--S----NPVA-----LSFPSSLSGLCSLTKLDISDCDLGEGA 254 (535)
Q Consensus 188 ~~l~~L~~L~L~~~~~~~~~~~~~--~~~~l~~l~l~--~----n~~~-----~~lp~~l~~l~~L~~L~Ls~~~l~~~~ 254 (535)
..+++|+.|.+..+.......... ....++.++++ + +.++ ..++..+..+++|+.|+|++ ++++..
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~ 447 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKV 447 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHH
T ss_pred HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHH
Confidence 347888888665444322111111 12346667666 2 3333 12333366788999999977 554322
Q ss_pred CCCCCC-CCCCCCEEeCCCCcCCC--CChhhcCCCCCcEEeccCCccccc----CCCCCCCcceEeccCccc
Q 041071 255 IPSSIG-DLCSLEELHLSGNNFFT--LPASIYRLSSLLGIDLKECKMLQN----LPRLPASIHWISLNGCVS 319 (535)
Q Consensus 255 lp~~l~-~l~~L~~L~Ls~n~l~~--lp~~i~~l~~L~~L~L~~c~~L~~----lp~lp~sL~~L~~~~C~s 319 (535)
+..+. .+++|+.|+|++|.+.. ++.....+++|++|+|++|+.... +..-.++|+.|++.+|+-
T Consensus 448 -~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 448 -FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp -HHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred -HHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 22233 37899999999999862 332336789999999999986221 112236788888888864
No 93
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=2.3e-20 Score=203.21 Aligned_cols=154 Identities=18% Similarity=0.255 Sum_probs=99.1
Q ss_pred CCCCcEEecCCCcCCCCC---C------------cccCCCCcCcEEEeeccCCcc-cchhhh-cCCCccEEeccCCCCCC
Q 041071 1 MESLKTLVLSGCSKLKKF---P------------DIVGGMECLQELRVDGTDIKE-LPVSIE-LMSGLVSLNLKDCRNLT 63 (535)
Q Consensus 1 L~~L~~L~Ls~~~~l~~l---p------------~~~~~~~~L~~L~L~~~~l~~-l~~~i~-~l~~L~~L~Ls~~~~l~ 63 (535)
+++|+.|+|++|.....+ | .....+++|++|+|+++.+.. .+..+. .+++|+.|++++|..+.
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 467888888887544322 1 123457788888888877653 223343 67888888888875444
Q ss_pred c--cCcccCCCCCCCEEeccCCCCCcc----CcccccCCCCCceeeccccc--Cc--ccCccccCCCCCCEeccccCcCC
Q 041071 64 T--LPITIGNLECLQTLVLSGCSKIVK----FPETVISVEDLSELFLDRTS--IT--EVPSSIELLTKLQWLNLNDCRSL 133 (535)
Q Consensus 64 ~--lp~~l~~l~~L~~L~Ls~c~~l~~----~p~~l~~l~~L~~L~L~~~~--i~--~lp~~i~~l~~L~~L~L~~c~~l 133 (535)
. ++..+.++++|++|+|++|..... ++.....+++|+.|+++++. +. .+...+..+++|+.|++.+|...
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence 3 444444688888888888763222 33334466788888888776 22 22333455788888888887655
Q ss_pred CccCccccCCCCCceeeccCc
Q 041071 134 VRLPSSINGLTSLKTLNLSGC 154 (535)
Q Consensus 134 ~~lp~~i~~l~~L~~L~Ls~c 154 (535)
..++..+..+++|++|++.+|
T Consensus 225 ~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 225 EKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HHHHHHHHHCTTCSEEECSBC
T ss_pred HHHHHHHhcCCcceEcccccc
Confidence 556666667777888776555
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.74 E-value=5.3e-17 Score=157.12 Aligned_cols=177 Identities=18% Similarity=0.164 Sum_probs=105.3
Q ss_pred cCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeeccc
Q 041071 27 CLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDR 106 (535)
Q Consensus 27 ~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~ 106 (535)
..++++++++.+..+|..+. ++|+.|++++|......+..+.++++|++|+|++|......+..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45566666666666665443 4566666666555444444566666666666666554444445556666666666666
Q ss_pred ccCcccCc-cccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccccCCCc
Q 041071 107 TSITEVPS-SIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLS 185 (535)
Q Consensus 107 ~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~ 185 (535)
|.+..++. .++.+++|++|++++|......+..+..+++|++|++++|......+..++.+++|+.|++++|.+..++.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 66665553 35666666666666665443333335566667777776663333223356666677777777776665554
Q ss_pred -ccccCCCCcEEEcCCCCCCC
Q 041071 186 -SIFLMKNLKELSCRGCKGSP 205 (535)
Q Consensus 186 -~i~~l~~L~~L~L~~~~~~~ 205 (535)
.+..+++|+.|++++|....
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCT
T ss_pred HHHhCCCCCCEEEeeCCceeC
Confidence 45566777777777766543
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.74 E-value=5.1e-17 Score=157.26 Aligned_cols=178 Identities=21% Similarity=0.207 Sum_probs=151.2
Q ss_pred CCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccch-hhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEecc
Q 041071 3 SLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPV-SIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLS 81 (535)
Q Consensus 3 ~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~-~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls 81 (535)
..+.++++++ .+..+|..+ .++|+.|+|+++.+..++. .+..+++|++|++++|......|..+..+++|++|+|+
T Consensus 15 ~~~~l~~~~~-~l~~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGK-SLDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTC-CCSSCCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCC-CccccCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4678999987 466788766 4799999999999998765 58899999999999988777667778999999999999
Q ss_pred CCCCCccCcccccCCCCCceeecccccCcccCcc-ccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCc
Q 041071 82 GCSKIVKFPETVISVEDLSELFLDRTSITEVPSS-IELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENV 160 (535)
Q Consensus 82 ~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l 160 (535)
+|......+..+..+++|++|++++|.++.++.. ++.+++|+.|++++|......+..+..+++|++|++++|......
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 9876665667789999999999999999988875 688999999999998765555557889999999999999655555
Q ss_pred hhhhhccccccEEEecCccccCC
Q 041071 161 PETLRQIESLEKLDISGTAIRQP 183 (535)
Q Consensus 161 p~~l~~l~~L~~L~L~~~~i~~~ 183 (535)
+..+..+++|+.|++++|.+...
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 56789999999999999998754
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.72 E-value=3.9e-19 Score=181.83 Aligned_cols=250 Identities=15% Similarity=0.122 Sum_probs=175.1
Q ss_pred EEEeeccCCcc-cchhhhcCCCccEEeccCCCCCCccC----cccCCCC-CCCEEeccCCCCCccCcccccCC-----CC
Q 041071 30 ELRVDGTDIKE-LPVSIELMSGLVSLNLKDCRNLTTLP----ITIGNLE-CLQTLVLSGCSKIVKFPETVISV-----ED 98 (535)
Q Consensus 30 ~L~L~~~~l~~-l~~~i~~l~~L~~L~Ls~~~~l~~lp----~~l~~l~-~L~~L~Ls~c~~l~~~p~~l~~l-----~~ 98 (535)
++.++++.+.. +|..+....+|++|++++|......+ ..+..++ +|++|+|++|......+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45778888874 45555556669999999987444333 5567788 89999999987655556656554 89
Q ss_pred CceeecccccCcccCcc-----ccCC-CCCCEeccccCcCCCccCcc----ccC-CCCCceeeccCccCCC----Cchhh
Q 041071 99 LSELFLDRTSITEVPSS-----IELL-TKLQWLNLNDCRSLVRLPSS----ING-LTSLKTLNLSGCFKLE----NVPET 163 (535)
Q Consensus 99 L~~L~L~~~~i~~lp~~-----i~~l-~~L~~L~L~~c~~l~~lp~~----i~~-l~~L~~L~Ls~c~~l~----~lp~~ 163 (535)
|++|++++|.+...+.. +..+ ++|+.|++++|......+.. +.. .++|++|++++|.... .++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 99999999999865432 5555 89999999998764443332 333 3689999999986543 34455
Q ss_pred hhccc-cccEEEecCccccCCCc-----ccccC-CCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccC
Q 041071 164 LRQIE-SLEKLDISGTAIRQPLS-----SIFLM-KNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSG 236 (535)
Q Consensus 164 l~~l~-~L~~L~L~~~~i~~~~~-----~i~~l-~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~ 236 (535)
+..++ +|++|++++|.+..... .+..+ ++|+.|++++|....... ..++..+..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~-------------------~~l~~~l~~ 222 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY-------------------AELAYIFSS 222 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH-------------------HHHHHHHHH
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH-------------------HHHHHHHhc
Confidence 56665 89999999998875442 33445 589999988887442110 123333444
Q ss_pred -CCCCCEEecCCCCCCCCCC---CCCCCCCCCCCEEeCCCCcCCC--------CChhhcCCCCCcEEeccCCcc
Q 041071 237 -LCSLTKLDISDCDLGEGAI---PSSIGDLCSLEELHLSGNNFFT--------LPASIYRLSSLLGIDLKECKM 298 (535)
Q Consensus 237 -l~~L~~L~Ls~~~l~~~~l---p~~l~~l~~L~~L~Ls~n~l~~--------lp~~i~~l~~L~~L~L~~c~~ 298 (535)
.++|++|+|++|.+.+... ...+..+++|+.|+|++|.+.. ++..+..+++|+.|++++|+.
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 3589999999998865221 3445778899999999998443 344567788899999999874
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=1.5e-16 Score=171.16 Aligned_cols=118 Identities=19% Similarity=0.263 Sum_probs=58.3
Q ss_pred CccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEecccc
Q 041071 50 GLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLND 129 (535)
Q Consensus 50 ~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 129 (535)
+|+.|++++|. +..+|..+ .++|++|+|++|. +..+| ..+++|++|++++|.|+.+|. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCC-CCccCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 56666666654 33455544 2556666666543 33444 334555555555555555555 333 555555555
Q ss_pred CcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccccCCCc
Q 041071 130 CRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLS 185 (535)
Q Consensus 130 c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~ 185 (535)
|... .+|. .+++|+.|++++|. +..+|. .+++|+.|++++|.++.+|.
T Consensus 130 N~l~-~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~lp~ 177 (571)
T 3cvr_A 130 NQLT-MLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTFLPE 177 (571)
T ss_dssp SCCS-CCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCCC
T ss_pred CcCC-CCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCCcch
Confidence 4432 2443 34555555555542 223433 33444455554444444433
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.70 E-value=3.4e-16 Score=168.54 Aligned_cols=178 Identities=23% Similarity=0.273 Sum_probs=144.0
Q ss_pred CCcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccC
Q 041071 3 SLKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSG 82 (535)
Q Consensus 3 ~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~ 82 (535)
+|+.|+|++|.. +.+|..+ .++|++|+|++|.+..+| ..+++|++|++++|. +..+|. +.+ +|++|+|++
T Consensus 60 ~L~~L~Ls~n~L-~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNL-SSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCC-SCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCC-CccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCC
Confidence 789999999864 4577655 488999999999999998 458899999999975 445887 654 999999998
Q ss_pred CCCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchh
Q 041071 83 CSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPE 162 (535)
Q Consensus 83 c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~ 162 (535)
|. +..+|. .+++|+.|++++|.++.+|. .+++|+.|++++|... .+|. +. ++|+.|+|++| .+..+|.
T Consensus 130 N~-l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~-~lp~-l~--~~L~~L~Ls~N-~L~~lp~ 197 (571)
T 3cvr_A 130 NQ-LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLT-FLPE-LP--ESLEALDVSTN-LLESLPA 197 (571)
T ss_dssp SC-CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-CCCC-CC--TTCCEEECCSS-CCSSCCC
T ss_pred Cc-CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCC-Ccch-hh--CCCCEEECcCC-CCCchhh
Confidence 75 444777 68899999999999998887 5789999999998754 4777 55 89999999998 4567777
Q ss_pred hhhccccc-------cEEEecCccccCCCcccccCCCCcEEEcCCCCCCC
Q 041071 163 TLRQIESL-------EKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSP 205 (535)
Q Consensus 163 ~l~~l~~L-------~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~ 205 (535)
+.. +| +.|++++|.++.+|..+..+++|+.|++++|....
T Consensus 198 -~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 198 -VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp -CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred -HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 544 67 99999999999999988889999999998887653
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=2.1e-16 Score=156.49 Aligned_cols=170 Identities=21% Similarity=0.310 Sum_probs=111.8
Q ss_pred CCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceee
Q 041071 24 GMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELF 103 (535)
Q Consensus 24 ~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~ 103 (535)
.+++|++|+++++.+..++ .+..+++|+.|++++|.. ..++. +.++++|++|++++|. +..+|. +..+++|++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l-~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKL-TDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCcc-CCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEE
Confidence 5677777777777777665 366677777777777653 33443 6667777777777754 333333 66777777777
Q ss_pred cccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccccCC
Q 041071 104 LDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQP 183 (535)
Q Consensus 104 L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~ 183 (535)
+++|.+..+ +.+..+++|+.|++++|.... + ..+..+++|++|++++|. +..++. +..+++|+.|++++|.+..+
T Consensus 119 L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 119 LEHNGISDI-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp CTTSCCCCC-GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred CCCCcCCCC-hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCCCcCCCC
Confidence 777777766 356677777777777765433 3 346667777777777773 334443 66777777777777777766
Q ss_pred CcccccCCCCcEEEcCCCCCC
Q 041071 184 LSSIFLMKNLKELSCRGCKGS 204 (535)
Q Consensus 184 ~~~i~~l~~L~~L~L~~~~~~ 204 (535)
+. +..+++|+.|++++|...
T Consensus 194 ~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 194 RA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp GG-GTTCTTCSEEEEEEEEEE
T ss_pred hh-hccCCCCCEEECcCCccc
Confidence 53 667777777777776543
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=2.8e-16 Score=155.61 Aligned_cols=172 Identities=23% Similarity=0.378 Sum_probs=105.5
Q ss_pred CCCCCCCEEeccCCCCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCcee
Q 041071 70 GNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTL 149 (535)
Q Consensus 70 ~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L 149 (535)
..+++|+.|++++|. +..++ .+..+++|++|++++|.+..++. +..+++|+.|++++|.. ..++.
T Consensus 43 ~~l~~L~~L~l~~~~-i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~----------- 107 (291)
T 1h6t_A 43 NELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV-KDLSS----------- 107 (291)
T ss_dssp HHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCGGG-----------
T ss_pred hhcCcccEEEccCCC-cccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcC-CCChh-----------
Confidence 446666777776653 33333 24555556666666655555544 55555555555555432 22222
Q ss_pred eccCccCCCCchhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccc
Q 041071 150 NLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALS 229 (535)
Q Consensus 150 ~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~ 229 (535)
+..+++|+.|++++|.+..+ +.+..+++|+.|++++|.....
T Consensus 108 --------------l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~----------------------- 149 (291)
T 1h6t_A 108 --------------LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI----------------------- 149 (291)
T ss_dssp --------------GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-----------------------
T ss_pred --------------hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-----------------------
Confidence 44444555555555544443 2344555566666555543211
Q ss_pred cCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChhhcCCCCCcEEeccCCcccc
Q 041071 230 FPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLKECKMLQ 300 (535)
Q Consensus 230 lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~ 300 (535)
..+..+++|+.|++++|.+.+ ++. +..+++|+.|++++|.+..+|. +..+++|+.|++++|+...
T Consensus 150 --~~l~~l~~L~~L~L~~N~l~~--~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 150 --TVLSRLTKLDTLSLEDNQISD--IVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp --GGGGGCTTCSEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred --hhhccCCCCCEEEccCCcccc--chh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccC
Confidence 125667788888888888854 433 7888899999999999988874 8889999999999987543
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.8e-16 Score=147.52 Aligned_cols=152 Identities=17% Similarity=0.224 Sum_probs=81.7
Q ss_pred hcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecccccCcc-cCccccCCCCCCE
Q 041071 46 ELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSITE-VPSSIELLTKLQW 124 (535)
Q Consensus 46 ~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~~ 124 (535)
..+++|+.|++++|. +..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|.+.. .+..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 344455555555433 22344 2444555555555554 222222 34445555555555555553 4455555666666
Q ss_pred eccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCC
Q 041071 125 LNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKG 203 (535)
Q Consensus 125 L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~ 203 (535)
|++++|......|..+..+++|++|++++|..+..+| .+..+++|+.|++++|.+..++ .+..+++|+.|++++|..
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 6666655544445555566666666666664455554 4566666666666666666554 556666666666666653
No 102
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=7.1e-19 Score=190.03 Aligned_cols=217 Identities=17% Similarity=0.146 Sum_probs=133.9
Q ss_pred CCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCcee
Q 041071 23 GGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSEL 102 (535)
Q Consensus 23 ~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L 102 (535)
..+++|+.|+|++|.++.+|..++++++|+.|++++|..+..+|..+ ..+...+..|..++.+++|+.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhcccC
Confidence 45777888888888888888888888888888876543222222111 1122334556666677777777
Q ss_pred e-cccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCcccc
Q 041071 103 F-LDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIR 181 (535)
Q Consensus 103 ~-L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~ 181 (535)
+ ++.+.+.. |..+.+.+|. +..+|. ..|+.|++++| .+..+|. ++.+++|+.|++++|.++
T Consensus 415 ~~l~~n~~~~----------L~~l~l~~n~-i~~l~~-----~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~ 476 (567)
T 1dce_A 415 DPMRAAYLDD----------LRSKFLLENS-VLKMEY-----ADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLR 476 (567)
T ss_dssp CGGGHHHHHH----------HHHHHHHHHH-HHHHHH-----TTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCC
T ss_pred cchhhcccch----------hhhhhhhccc-ccccCc-----cCceEEEecCC-CCCCCcC-ccccccCcEeecCccccc
Confidence 6 55554332 2233333332 112221 13667777776 4455665 777777777777777777
Q ss_pred CCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCC
Q 041071 182 QPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGD 261 (535)
Q Consensus 182 ~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~ 261 (535)
.+|..++.+++|+.|++++|.... +| .+..+++|+.|+|++|.+.....|..++.
T Consensus 477 ~lp~~~~~l~~L~~L~Ls~N~l~~------------------------lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~ 531 (567)
T 1dce_A 477 ALPPALAALRCLEVLQASDNALEN------------------------VD-GVANLPRLQELLLCNNRLQQSAAIQPLVS 531 (567)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCC------------------------CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGG
T ss_pred ccchhhhcCCCCCEEECCCCCCCC------------------------Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhc
Confidence 777666666666666666655331 33 36677778888888887754212777788
Q ss_pred CCCCCEEeCCCCcCCCCChhh----cCCCCCcEEec
Q 041071 262 LCSLEELHLSGNNFFTLPASI----YRLSSLLGIDL 293 (535)
Q Consensus 262 l~~L~~L~Ls~n~l~~lp~~i----~~l~~L~~L~L 293 (535)
+++|+.|+|++|.+..+|..+ ..+++|+.|++
T Consensus 532 l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 532 CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 888888888888887766533 33677777753
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.65 E-value=1.2e-15 Score=143.11 Aligned_cols=178 Identities=17% Similarity=0.079 Sum_probs=139.5
Q ss_pred cEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchh-hhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCC
Q 041071 5 KTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVS-IELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGC 83 (535)
Q Consensus 5 ~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~-i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c 83 (535)
+.++.+++. +..+|..+ .++|++|+++++.+..++.. +..+++|++|++++|......+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~-l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQG-RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCC-ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 456777753 55666554 57899999999999988764 688999999999997655444455688999999999997
Q ss_pred CCCccCcccccCCCCCceeecccccCcccCcc-ccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchh
Q 041071 84 SKIVKFPETVISVEDLSELFLDRTSITEVPSS-IELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPE 162 (535)
Q Consensus 84 ~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~ 162 (535)
......+..+..+++|++|++++|.+..++.. ++.+++|+.|++++|......+..+..+++|++|++++|...
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----
Confidence 65544455578999999999999999988765 788999999999998765544555788999999999998543
Q ss_pred hhhccccccEEEecCcccc-CCCcccccCCC
Q 041071 163 TLRQIESLEKLDISGTAIR-QPLSSIFLMKN 192 (535)
Q Consensus 163 ~l~~l~~L~~L~L~~~~i~-~~~~~i~~l~~ 192 (535)
+.+++|+.|+++.|.+. .+|..++.++.
T Consensus 162 --~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 --CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp --CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred --cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 44567888999988888 66777766654
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.65 E-value=1.3e-15 Score=142.84 Aligned_cols=173 Identities=18% Similarity=0.117 Sum_probs=123.8
Q ss_pred cEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeeccccc
Q 041071 29 QELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTS 108 (535)
Q Consensus 29 ~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~ 108 (535)
+.++.+++.+.++|..+ .++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 56777778888887654 5688888888876554444456778888888888865544344456788888888888888
Q ss_pred CcccCcc-ccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccccCCCccc
Q 041071 109 ITEVPSS-IELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLSSI 187 (535)
Q Consensus 109 i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~~i 187 (535)
+..++.. ++.+++|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------ 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------ 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------
Confidence 8877764 578888888888887655444455677888888888888544433445778888888888888665
Q ss_pred ccCCCCcEEEcCCCCCCCCCCc
Q 041071 188 FLMKNLKELSCRGCKGSPSSAS 209 (535)
Q Consensus 188 ~~l~~L~~L~L~~~~~~~~~~~ 209 (535)
..+++|+.|++..+......+.
T Consensus 162 ~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 162 CTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp CCTTTTHHHHHHHHHCTTTBBC
T ss_pred cCCCCHHHHHHHHHhCCceeec
Confidence 3456777777777665544443
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=2.4e-15 Score=163.49 Aligned_cols=193 Identities=22% Similarity=0.354 Sum_probs=119.0
Q ss_pred CCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccc
Q 041071 49 SGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLN 128 (535)
Q Consensus 49 ~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 128 (535)
.++..+.+..+... .++. +..+.+|+.|++++|. +..++ .+..+++|+.|+|++|.+..++. +..+++|+.|+|+
T Consensus 21 ~~l~~l~l~~~~i~-~~~~-~~~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 21 AETIKDNLKKKSVT-DAVT-QNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHTTCSCTT-SEEC-HHHHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECC
T ss_pred HHHHHHhccCCCcc-cccc-hhcCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECc
Confidence 34445555543322 2222 4567888888888865 44454 47778888888888888887776 7788888888888
Q ss_pred cCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCC
Q 041071 129 DCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSA 208 (535)
Q Consensus 129 ~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~ 208 (535)
+|.. ..+| .+..+++|+.|+|++|. +..++ .+..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|.....
T Consensus 96 ~N~l-~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~-- 168 (605)
T 1m9s_A 96 ENKI-KDLS-SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-- 168 (605)
T ss_dssp SSCC-CCCT-TSTTCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCC--
T ss_pred CCCC-CCCh-hhccCCCCCEEEecCCC-CCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCc--
Confidence 7754 3444 46777778888877774 33343 466677777777777776655 4555566666666655543211
Q ss_pred ccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCC
Q 041071 209 SWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLP 279 (535)
Q Consensus 209 ~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp 279 (535)
.| +..+++|+.|+|++|.+.. + ..+..+++|+.|+|++|.+...|
T Consensus 169 ---------------------~~--l~~l~~L~~L~Ls~N~i~~--l-~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 169 ---------------------VP--LAGLTKLQNLYLSKNHISD--L-RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp ---------------------GG--GTTCTTCCEEECCSSCCCB--C-GGGTTCTTCSEEECCSEEEECCC
T ss_pred ---------------------hh--hccCCCCCEEECcCCCCCC--C-hHHccCCCCCEEEccCCcCcCCc
Confidence 11 4455556666666665543 2 23555556666666666555444
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=1.9e-15 Score=164.30 Aligned_cols=170 Identities=21% Similarity=0.294 Sum_probs=112.4
Q ss_pred CCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceee
Q 041071 24 GMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELF 103 (535)
Q Consensus 24 ~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~ 103 (535)
.+++|+.|+++++.+..++ .+..+++|+.|+|++|.. ..++. +..+++|+.|+|++|. +..+| .+..+++|+.|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l-~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKL-TDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCC-CCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEE
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCC-CCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEE
Confidence 5677777777777777665 466777777777777653 33333 6667777777777754 33343 566677777777
Q ss_pred cccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccccCC
Q 041071 104 LDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQP 183 (535)
Q Consensus 104 L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~ 183 (535)
|++|.+..++ .+..+++|+.|+|++|.... + ..+..+++|+.|+|++|.... ++. +..+++|+.|+|++|.+..+
T Consensus 116 Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 116 LEHNGISDIN-GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp CTTSCCCCCG-GGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCBC
T ss_pred ecCCCCCCCc-cccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCC-chh-hccCCCCCEEECcCCCCCCC
Confidence 7777777653 46677777777777765433 3 446667777777777774333 333 67777777777777777765
Q ss_pred CcccccCCCCcEEEcCCCCCC
Q 041071 184 LSSIFLMKNLKELSCRGCKGS 204 (535)
Q Consensus 184 ~~~i~~l~~L~~L~L~~~~~~ 204 (535)
+ .+..+++|+.|++++|...
T Consensus 191 ~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 191 R-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp G-GGTTCTTCSEEECCSEEEE
T ss_pred h-HHccCCCCCEEEccCCcCc
Confidence 3 4667777777777777644
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=1.2e-15 Score=141.86 Aligned_cols=154 Identities=17% Similarity=0.246 Sum_probs=131.6
Q ss_pred CCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCcee
Q 041071 23 GGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSEL 102 (535)
Q Consensus 23 ~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L 102 (535)
+.+++|++|+++++.+..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|......+..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 57899999999999999998 7899999999999998 455554 58889999999999987776678889999999999
Q ss_pred ecccccCcc-cCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCcccc
Q 041071 103 FLDRTSITE-VPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIR 181 (535)
Q Consensus 103 ~L~~~~i~~-lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~ 181 (535)
++++|.+.. .+..++.+++|++|++++|..+..+| .+..+++|++|++++|. +..++ .+..+++|+.|++++|.+.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECBC---
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEeeCcccC
Confidence 999999985 67789999999999999998677777 58889999999999995 55565 7889999999999999875
Q ss_pred C
Q 041071 182 Q 182 (535)
Q Consensus 182 ~ 182 (535)
.
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 3
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=3.6e-17 Score=176.69 Aligned_cols=179 Identities=18% Similarity=0.220 Sum_probs=138.0
Q ss_pred cCCCCCceeecccccCcccCccccCCCCCCEeccccCc-------------CCCccCccccCCCCCceee-ccCccCCCC
Q 041071 94 ISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCR-------------SLVRLPSSINGLTSLKTLN-LSGCFKLEN 159 (535)
Q Consensus 94 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~-------------~l~~lp~~i~~l~~L~~L~-Ls~c~~l~~ 159 (535)
...++|+.|+|++|.+..+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.+ .+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccch
Confidence 56788889999999999999999999999999887654 3344555666677777777 4433 2222
Q ss_pred chh------hhhc--cccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccC
Q 041071 160 VPE------TLRQ--IESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFP 231 (535)
Q Consensus 160 lp~------~l~~--l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp 231 (535)
++. .+.. ...|+.|++++|.++.+|. +..+++|+.|++++|... .+|
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~------------------------~lp 479 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR------------------------ALP 479 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC------------------------CCC
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc------------------------ccc
Confidence 221 1111 1257788888888887776 777888888888777643 467
Q ss_pred CcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCC--ChhhcCCCCCcEEeccCCccccc
Q 041071 232 SSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTL--PASIYRLSSLLGIDLKECKMLQN 301 (535)
Q Consensus 232 ~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~l--p~~i~~l~~L~~L~L~~c~~L~~ 301 (535)
..+..+++|+.|+|++|.++. +| .++.+++|+.|+|++|.+..+ |..+..+++|+.|+|++|+..+.
T Consensus 480 ~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 480 PALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp GGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred hhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 778999999999999999975 77 899999999999999999988 89999999999999999986443
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.61 E-value=6.4e-15 Score=139.61 Aligned_cols=151 Identities=19% Similarity=0.233 Sum_probs=98.1
Q ss_pred cEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeeccccc
Q 041071 29 QELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTS 108 (535)
Q Consensus 29 ~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~ 108 (535)
+.++++++.+.++|..+. ++|+.|++++|......+..|..+++|+.|+|++|......|..+..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 556666777777776543 567777777765444334456667777777777766555556667777777777777777
Q ss_pred CcccCcc-ccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCcccc
Q 041071 109 ITEVPSS-IELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIR 181 (535)
Q Consensus 109 i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~ 181 (535)
++.+|.. +..+++|+.|++++|......|..+..+++|++|+|++|......+..+..+++|+.|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 7776654 466777777777776655555566666777777777776443333345666666666766666654
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=1.2e-14 Score=137.67 Aligned_cols=150 Identities=17% Similarity=0.168 Sum_probs=68.8
Q ss_pred EEEeeccCCcccchhhhcCCCccEEeccCCCCCCccC-cccCCCCCCCEEeccCCCCCccCcccccCCCCCceeeccccc
Q 041071 30 ELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLP-ITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTS 108 (535)
Q Consensus 30 ~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp-~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~ 108 (535)
.++++++.++++|..+ ...++.|++++|......| ..|..+++|++|+|++|......+..+..+++|++|++++|.
T Consensus 15 ~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 4444444444444332 2233444444433222212 123444444444444443333233344444455555555555
Q ss_pred CcccCcc-ccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCcccc
Q 041071 109 ITEVPSS-IELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIR 181 (535)
Q Consensus 109 i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~ 181 (535)
+..++.. ++.+++|++|++++|......|..+..+++|++|+|++|......|..+..+++|+.|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 5544332 445555555555555444444444555555555555555333333455555555555555555554
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=1.4e-15 Score=148.24 Aligned_cols=169 Identities=25% Similarity=0.287 Sum_probs=117.2
Q ss_pred CCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEe
Q 041071 96 VEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDI 175 (535)
Q Consensus 96 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 175 (535)
+.++..++++++.+..++ .+..+++|+.|++++|. +..++ .+..+++|++|++++| .+..++. +..+++|+.|++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 445566666666666665 46667777777777764 34555 4666777777777777 3444544 677777777777
Q ss_pred cCccccCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCC
Q 041071 176 SGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAI 255 (535)
Q Consensus 176 ~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~l 255 (535)
++|.+..++.... ++|+.|++++|.... ++ .+..+++|+.|++++|.+.+ +
T Consensus 93 ~~N~l~~l~~~~~--~~L~~L~L~~N~l~~------------------------~~-~l~~l~~L~~L~Ls~N~i~~--~ 143 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--ACLSRLFLDNNELRD------------------------TD-SLIHLKNLEILSIRNNKLKS--I 143 (263)
T ss_dssp CSSCCSCCTTCCC--SSCCEEECCSSCCSB------------------------SG-GGTTCTTCCEEECTTSCCCB--C
T ss_pred CCCccCCcCcccc--CcccEEEccCCccCC------------------------Ch-hhcCcccccEEECCCCcCCC--C
Confidence 7777776654333 777777777765431 12 36677888888888888864 4
Q ss_pred CCCCCCCCCCCEEeCCCCcCCCCChhhcCCCCCcEEeccCCcccc
Q 041071 256 PSSIGDLCSLEELHLSGNNFFTLPASIYRLSSLLGIDLKECKMLQ 300 (535)
Q Consensus 256 p~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~ 300 (535)
+ .+..+++|+.|++++|.+..+ ..+..+++|+.|++++|+...
T Consensus 144 ~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 144 V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccC
Confidence 4 577788888888888888877 567888888888888887543
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=2.1e-14 Score=136.84 Aligned_cols=149 Identities=21% Similarity=0.211 Sum_probs=68.2
Q ss_pred cEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCc-ccccCCCCCceeecccc
Q 041071 29 QELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFP-ETVISVEDLSELFLDRT 107 (535)
Q Consensus 29 ~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p-~~l~~l~~L~~L~L~~~ 107 (535)
+.++.+++.+..+|..+ .++|++|++++|......|..+..+++|++|+|++|.. ..+| ..+..+++|++|+|++|
T Consensus 22 ~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCC
Confidence 34444444444444433 24455555554443333344444455555555554432 2222 23344555555555555
Q ss_pred cCcccCcc-ccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCcccc
Q 041071 108 SITEVPSS-IELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIR 181 (535)
Q Consensus 108 ~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~ 181 (535)
.++.++.. +..+++|+.|++++|.. ..+|..+..+++|++|++++|......+..+..+++|+.|++++|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCC-CSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCcc-cccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 55544432 34455555555554432 244444445555555555554222222233444555555555555544
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.58 E-value=1.5e-14 Score=147.72 Aligned_cols=173 Identities=18% Similarity=0.166 Sum_probs=117.4
Q ss_pred cEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccC-CCCCCCEEeccCCCCCccCcccccCCCCCceeecccc
Q 041071 29 QELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIG-NLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRT 107 (535)
Q Consensus 29 ~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~-~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~ 107 (535)
+.++++++.+..+|..+ ...++.|+|++|......+..+. ++++|+.|+|++|......+..+..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 56777777777777654 34577777777654444444454 6777777777776555445566777777888888877
Q ss_pred cCcccCc-cccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhh----hccccccEEEecCccccC
Q 041071 108 SITEVPS-SIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETL----RQIESLEKLDISGTAIRQ 182 (535)
Q Consensus 108 ~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l----~~l~~L~~L~L~~~~i~~ 182 (535)
.+..++. .+..+++|+.|+|++|......|..+..+++|++|+|++| .+..+|..+ ..+++|+.|++++|.+..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 7777665 4677788888888877766555667777888888888877 444555443 567788888888888877
Q ss_pred CC-cccccCCC--CcEEEcCCCCCC
Q 041071 183 PL-SSIFLMKN--LKELSCRGCKGS 204 (535)
Q Consensus 183 ~~-~~i~~l~~--L~~L~L~~~~~~ 204 (535)
++ ..+..++. |+.|++++|...
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 66 34555655 367788777643
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.58 E-value=1e-14 Score=148.89 Aligned_cols=173 Identities=20% Similarity=0.154 Sum_probs=122.4
Q ss_pred cEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchh-hh-cCCCccEEeccCCCCCCccCcccCCCCCCCEEeccC
Q 041071 5 KTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVS-IE-LMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSG 82 (535)
Q Consensus 5 ~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~-i~-~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~ 82 (535)
++++++++ .++.+|..+ ...++.|+|++|.+..++.. +. .+++|+.|+|++|......+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~-~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSS-CCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCC-CcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46777776 456677654 45678888888888877664 44 788888888888765544455678888888888888
Q ss_pred CCCCccCcccccCCCCCceeecccccCccc-CccccCCCCCCEeccccCcCCCccCccc----cCCCCCceeeccCccCC
Q 041071 83 CSKIVKFPETVISVEDLSELFLDRTSITEV-PSSIELLTKLQWLNLNDCRSLVRLPSSI----NGLTSLKTLNLSGCFKL 157 (535)
Q Consensus 83 c~~l~~~p~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~i----~~l~~L~~L~Ls~c~~l 157 (535)
|......+..+..+++|++|+|++|.|..+ +..+..+++|+.|+|++|.. ..+|..+ ..+++|+.|+|++|...
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 765444455677888888888888888876 45678888888888888764 3455443 45788888888888443
Q ss_pred CCchhhhhcccc--ccEEEecCcccc
Q 041071 158 ENVPETLRQIES--LEKLDISGTAIR 181 (535)
Q Consensus 158 ~~lp~~l~~l~~--L~~L~L~~~~i~ 181 (535)
...+..+..++. ++.|++++|.+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 333356677766 477888888776
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.58 E-value=1.8e-14 Score=136.48 Aligned_cols=150 Identities=21% Similarity=0.215 Sum_probs=120.1
Q ss_pred cEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccch--hhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccC
Q 041071 5 KTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPV--SIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSG 82 (535)
Q Consensus 5 ~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~--~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~ 82 (535)
+.++++++. ++.+|..+ ...+++|+|++|.+..++. .+..+++|+.|++++|......+..|.++++|++|+|++
T Consensus 14 ~~l~~s~n~-l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSC-CSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCC-cccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 578888874 56677655 4567899999999888743 378899999999998775555555788899999999998
Q ss_pred CCCCccCcccccCCCCCceeecccccCccc-CccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCC
Q 041071 83 CSKIVKFPETVISVEDLSELFLDRTSITEV-PSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKL 157 (535)
Q Consensus 83 c~~l~~~p~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l 157 (535)
|......+..+..+++|++|++++|.+..+ |..+..+++|+.|++++|......|..+..+++|++|++++|...
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 876666666788899999999999999877 567888999999999988776666888888999999999988543
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.58 E-value=2.7e-14 Score=135.24 Aligned_cols=149 Identities=20% Similarity=0.240 Sum_probs=126.9
Q ss_pred cEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccch-hhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCC
Q 041071 5 KTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPV-SIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGC 83 (535)
Q Consensus 5 ~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~-~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c 83 (535)
+.++++++ .++.+|..+ .++|++|++++|.+..++. .+..+++|+.|+|++|......|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~-~l~~iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTS-CCSSCCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCC-CcCcCCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56888886 467788765 4799999999999998876 6889999999999998877666888999999999999997
Q ss_pred CCCccCcccccCCCCCceeecccccCcccC-ccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccC
Q 041071 84 SKIVKFPETVISVEDLSELFLDRTSITEVP-SSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFK 156 (535)
Q Consensus 84 ~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~ 156 (535)
......+..+..+++|++|+|++|.+..++ ..+..+++|+.|++++|......+..+..+++|++|++++|..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 655444445788999999999999999874 5789999999999999987666666788999999999999854
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=3.7e-15 Score=145.26 Aligned_cols=167 Identities=20% Similarity=0.266 Sum_probs=118.5
Q ss_pred CCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeec
Q 041071 25 MECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFL 104 (535)
Q Consensus 25 ~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L 104 (535)
+.+++.+++.++.+..++ .+..+++|+.|++++|. +..+| .+..+++|+.|+|++|. +..++. +..+++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEEC
Confidence 566666777777777776 56777778888887764 45566 46777788888887764 444554 777778888888
Q ss_pred ccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCccccCCC
Q 041071 105 DRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIRQPL 184 (535)
Q Consensus 105 ~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~ 184 (535)
++|.++.++.... ++|+.|++++|... .++ .+..+++|++|++++|. +..++ .+..+++|+.|++++|.+...
T Consensus 93 ~~N~l~~l~~~~~--~~L~~L~L~~N~l~-~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--ACLSRLFLDNNELR-DTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp CSSCCSCCTTCCC--SSCCEEECCSSCCS-BSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCCccCCcCcccc--CcccEEEccCCccC-CCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch-
Confidence 8888777765433 77888888877543 344 47778888888888774 44554 577788888888888888776
Q ss_pred cccccCCCCcEEEcCCCCC
Q 041071 185 SSIFLMKNLKELSCRGCKG 203 (535)
Q Consensus 185 ~~i~~l~~L~~L~L~~~~~ 203 (535)
..+..+++|+.|++++|..
T Consensus 166 ~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCcc
Confidence 6677778888888877654
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.57 E-value=2.4e-14 Score=136.52 Aligned_cols=150 Identities=23% Similarity=0.160 Sum_probs=96.3
Q ss_pred cEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCccc-chhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCC
Q 041071 5 KTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKEL-PVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGC 83 (535)
Q Consensus 5 ~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l-~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c 83 (535)
+.++.+++ .++.+|..+ .++|++|+|++|.+..+ |..+..+++|++|+|++|......+..+..+++|++|+|++|
T Consensus 22 ~~v~c~~~-~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSK-RHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCC-CcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 45666654 355666544 47777777777777765 445667777777777776543333344566777777777776
Q ss_pred CCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCC
Q 041071 84 SKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKL 157 (535)
Q Consensus 84 ~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l 157 (535)
......+..+..+++|++|++++|.+..+|..+..+++|+.|++++|......+..+..+++|+.|++++|...
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 44433344456777777777777777777777777777777777776544333345666777777777776543
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=4.8e-15 Score=164.87 Aligned_cols=191 Identities=15% Similarity=0.152 Sum_probs=61.5
Q ss_pred CcCcEEEeeccCCcccchhhhcCCCccEEeccCC----CCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCce
Q 041071 26 ECLQELRVDGTDIKELPVSIELMSGLVSLNLKDC----RNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSE 101 (535)
Q Consensus 26 ~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~----~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~ 101 (535)
+.++.|.|.++.+..++..+-...+|+.+.+... ..+...|..+..+.+|+.|+|++|. +..+|..+..+++|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTR 251 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCE
Confidence 4456666666666655544333333333332221 1122233444445555555555443 2244444444444444
Q ss_pred eecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchhhhhccccccEEEecCcccc
Q 041071 102 LFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPETLRQIESLEKLDISGTAIR 181 (535)
Q Consensus 102 L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~ 181 (535)
|+|++|.|+.+|..++.+++|+.|+|++|... .+|..+..+++| +.|+|++|.+.
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L------------------------~~L~L~~N~l~ 306 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL------------------------KYFYFFDNMVT 306 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC------------------------SEEECCSSCCC
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC------------------------CEEECCCCCCC
Confidence 44444444444444444444444444444322 344444444444 44444444444
Q ss_pred CCCcccccCCCCcEEEcCCCCCCCCCCccccccc--cccccccCCCcccccCCcccCCCCCCEEecCCC
Q 041071 182 QPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFP--INLMRWSSNPVALSFPSSLSGLCSLTKLDISDC 248 (535)
Q Consensus 182 ~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~--l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~ 248 (535)
.+|..+..+++|+.|+|++|......+..+.... ...+++..|.+.+.+|. .|+.|+++.|
T Consensus 307 ~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 307 TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 4444444444444444444443332222221111 12345666666666554 4556666655
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=3.8e-14 Score=128.06 Aligned_cols=129 Identities=19% Similarity=0.190 Sum_probs=89.6
Q ss_pred CCCcCcEEEeeccCCc--ccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCce
Q 041071 24 GMECLQELRVDGTDIK--ELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSE 101 (535)
Q Consensus 24 ~~~~L~~L~L~~~~l~--~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~ 101 (535)
..++|++|++++|.+. .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.....+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3466777777777776 677666777777777777765 3333 44667777777777776655556666666777777
Q ss_pred eecccccCcccC--ccccCCCCCCEeccccCcCCCccCc----cccCCCCCceeeccCcc
Q 041071 102 LFLDRTSITEVP--SSIELLTKLQWLNLNDCRSLVRLPS----SINGLTSLKTLNLSGCF 155 (535)
Q Consensus 102 L~L~~~~i~~lp--~~i~~l~~L~~L~L~~c~~l~~lp~----~i~~l~~L~~L~Ls~c~ 155 (535)
|++++|.++.++ ..++.+++|+.|++++|... .+|. .+..+++|++|++++|.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCC
Confidence 777777777765 56777777777777777544 3333 56677778888777773
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=5.7e-14 Score=126.89 Aligned_cols=134 Identities=19% Similarity=0.268 Sum_probs=68.7
Q ss_pred CCCccEEeccCCCCC-CccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecccccCcc-cCccccCCCCCCEe
Q 041071 48 MSGLVSLNLKDCRNL-TTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSITE-VPSSIELLTKLQWL 125 (535)
Q Consensus 48 l~~L~~L~Ls~~~~l-~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L 125 (535)
.++|+.|++++|... ..+|..+..+++|+.|++++|. +..+ ..+..+++|++|++++|.+.. +|..++.+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 345555555555432 2455545555555555555544 2223 445555555555555555554 44444455555555
Q ss_pred ccccCcCCCccC--ccccCCCCCceeeccCccCCCCchh----hhhccccccEEEecCccccCCCc
Q 041071 126 NLNDCRSLVRLP--SSINGLTSLKTLNLSGCFKLENVPE----TLRQIESLEKLDISGTAIRQPLS 185 (535)
Q Consensus 126 ~L~~c~~l~~lp--~~i~~l~~L~~L~Ls~c~~l~~lp~----~l~~l~~L~~L~L~~~~i~~~~~ 185 (535)
++++|.. ..+| ..+..+++|++|++++|.. ..+|. .+..+++|+.|++++|.+.+.|.
T Consensus 101 ~Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 101 NLSGNKL-KDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp ECBSSSC-CSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred eccCCcc-CcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 5555543 2222 3455555555555555532 22222 45555555555555555554443
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.48 E-value=4.1e-14 Score=125.10 Aligned_cols=126 Identities=19% Similarity=0.174 Sum_probs=87.9
Q ss_pred CCcCcEEEeeccCCc--ccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCcee
Q 041071 25 MECLQELRVDGTDIK--ELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSEL 102 (535)
Q Consensus 25 ~~~L~~L~L~~~~l~--~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L 102 (535)
.++|++|+++++.+. .+|..+..+++|++|++++|.. ..+ ..++.+++|++|++++|.....+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC-CCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC-CCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 466777777777776 6776667777777777777653 333 446677777777777766555577777777778888
Q ss_pred ecccccCcccC--ccccCCCCCCEeccccCcCCCccC---ccccCCCCCceeecc
Q 041071 103 FLDRTSITEVP--SSIELLTKLQWLNLNDCRSLVRLP---SSINGLTSLKTLNLS 152 (535)
Q Consensus 103 ~L~~~~i~~lp--~~i~~l~~L~~L~L~~c~~l~~lp---~~i~~l~~L~~L~Ls 152 (535)
++++|.++.++ ..++.+++|+.|++++|......+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88777777654 667778888888888775433322 256677788887765
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.48 E-value=2.2e-14 Score=159.46 Aligned_cols=190 Identities=16% Similarity=0.127 Sum_probs=117.1
Q ss_pred CCcEEecCCCcCCCCCCcccCCCCcCcEEEee-----ccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCE
Q 041071 3 SLKTLVLSGCSKLKKFPDIVGGMECLQELRVD-----GTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQT 77 (535)
Q Consensus 3 ~L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~-----~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~ 77 (535)
+++.|+|+++.... .+........|+.+.+. .+.+...+..+..+.+|+.|+|++|.. ..+|..+.++++|++
T Consensus 174 ~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 174 LTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQI-FNISANIFKYDFLTR 251 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCC-SCCCGGGGGCCSCSC
T ss_pred ccceEEeeCCCCCc-chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCC-CCCChhhcCCCCCCE
Confidence 46677887765433 34333233344443332 244445566788999999999999774 578877888999999
Q ss_pred EeccCCCCCccCcccccCCCCCceeecccccCcccCccccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCC
Q 041071 78 LVLSGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKL 157 (535)
Q Consensus 78 L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l 157 (535)
|+|++|.. ..+|..++.+++|++|+|++|.|+.+|..++.+++|++|+|++|.. ..+|..+..+++|++|+|++|...
T Consensus 252 L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 252 LYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CBCTTSCC-SCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCC
T ss_pred EEeeCCcC-cccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCC-CccChhhhcCCCccEEeCCCCccC
Confidence 99999754 4899999999999999999999999999999999999999999864 688988999999999999999877
Q ss_pred CCchhhhhcccc-ccEEEecCccccCCCcccccCCCCcEEEcCCC
Q 041071 158 ENVPETLRQIES-LEKLDISGTAIRQPLSSIFLMKNLKELSCRGC 201 (535)
Q Consensus 158 ~~lp~~l~~l~~-L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~ 201 (535)
+.+|..+..+.. +..|++++|.+...+ +..|..|+++.+
T Consensus 330 ~~~p~~~~~~~~~~~~l~l~~N~l~~~~-----p~~l~~l~l~~n 369 (727)
T 4b8c_D 330 KQFLKILTEKSVTGLIFYLRDNRPEIPL-----PHERRFIEINTD 369 (727)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCCCCC-----CCC---------
T ss_pred CCChHHHhhcchhhhHHhhccCcccCcC-----ccccceeEeecc
Confidence 788887766532 234678888776432 235566666655
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=1.1e-13 Score=122.25 Aligned_cols=126 Identities=20% Similarity=0.188 Sum_probs=61.5
Q ss_pred CCccEEeccCCCCC-CccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecccccCcc-cCccccCCCCCCEec
Q 041071 49 SGLVSLNLKDCRNL-TTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSITE-VPSSIELLTKLQWLN 126 (535)
Q Consensus 49 ~~L~~L~Ls~~~~l-~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L~ 126 (535)
++|+.|++++|... ..+|..+..+++|+.|++++|.. ..+ ..+..+++|++|++++|.+.. +|..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC-CCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC-CCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555433 24555455555555555555432 222 444555555555555555554 444444455555555
Q ss_pred cccCcCCCc-cCccccCCCCCceeeccCccCCCCch---hhhhccccccEEEec
Q 041071 127 LNDCRSLVR-LPSSINGLTSLKTLNLSGCFKLENVP---ETLRQIESLEKLDIS 176 (535)
Q Consensus 127 L~~c~~l~~-lp~~i~~l~~L~~L~Ls~c~~l~~lp---~~l~~l~~L~~L~L~ 176 (535)
+++|..... .+..+..+++|++|++++|......+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555543221 12445555555555555553222211 245555555555543
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=2.4e-12 Score=119.17 Aligned_cols=123 Identities=24% Similarity=0.287 Sum_probs=58.9
Q ss_pred EEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCC
Q 041071 6 TLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSK 85 (535)
Q Consensus 6 ~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~ 85 (535)
+++++++. ++.+|..+ .++|++|++++|.+..+|..+..+++|+.|+|++|......+..|.++++|++|+|++
T Consensus 14 ~l~~~~~~-l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~--- 87 (193)
T 2wfh_A 14 VVRCSNKG-LKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY--- 87 (193)
T ss_dssp EEECTTSC-CSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS---
T ss_pred EEEcCCCC-CCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC---
Confidence 44444442 33444332 2445555555555555554555555555555555443333333444455555555554
Q ss_pred CccCcccccCCCCCceeecccccCcccCc-cccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCcc
Q 041071 86 IVKFPETVISVEDLSELFLDRTSITEVPS-SIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCF 155 (535)
Q Consensus 86 l~~~p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~ 155 (535)
|.++.++. .+..+++|+.|++++|......+..+..+++|+.|++++|.
T Consensus 88 ---------------------N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 88 ---------------------NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp ---------------------SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ---------------------CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 44544433 34555555555555544332222234555566666666553
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.40 E-value=2e-12 Score=119.51 Aligned_cols=129 Identities=26% Similarity=0.242 Sum_probs=82.2
Q ss_pred cEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCc-ccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecccc
Q 041071 29 QELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPI-TIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRT 107 (535)
Q Consensus 29 ~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~-~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~ 107 (535)
+.++++++.++++|..+. .+|+.|++++|......+. .+..+++|++|+|++|......|..+..+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 556666666666665442 2666666666543322222 2556666666666666555555666666667777777777
Q ss_pred cCcccCc-cccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCC
Q 041071 108 SITEVPS-SIELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLEN 159 (535)
Q Consensus 108 ~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~ 159 (535)
.++.++. .++.+++|++|++++|......|..+..+++|++|++++|.....
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 7776554 367777777777777776666677777778888888887765433
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.39 E-value=2.4e-12 Score=119.03 Aligned_cols=126 Identities=23% Similarity=0.226 Sum_probs=88.0
Q ss_pred cEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchh--hhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccC
Q 041071 5 KTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVS--IELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSG 82 (535)
Q Consensus 5 ~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~--i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~ 82 (535)
++++++++. ++.+|..+ ..+|++|++++|.+..++.. ++.+++|++|+|++|......|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~-l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSC-CSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCC-cCcCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 567777764 45666544 33777777777777777653 67777777777777766555566777777777777777
Q ss_pred CCCCccCcccccCCCCCceeecccccCccc-CccccCCCCCCEeccccCcCC
Q 041071 83 CSKIVKFPETVISVEDLSELFLDRTSITEV-PSSIELLTKLQWLNLNDCRSL 133 (535)
Q Consensus 83 c~~l~~~p~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l 133 (535)
|......+..+..+++|++|++++|.++.+ |..++.+++|++|++++|...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 665555556677777777777777777754 556777777777777776654
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=1.2e-12 Score=119.27 Aligned_cols=129 Identities=18% Similarity=0.187 Sum_probs=99.5
Q ss_pred CCCCcCcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcc-cccCCCCCce
Q 041071 23 GGMECLQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPE-TVISVEDLSE 101 (535)
Q Consensus 23 ~~~~~L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~-~l~~l~~L~~ 101 (535)
..+.+|++|++++|.+..++......++|++|++++|.. ..+ ..+..+++|++|++++|... .+|. .+..+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l-~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI-RKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC-CEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCC-Ccc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCE
Confidence 378888999998888888865333344899999988764 444 45788889999999887644 4454 4488889999
Q ss_pred eecccccCcccCc--cccCCCCCCEeccccCcCCCccCcc----ccCCCCCceeeccCcc
Q 041071 102 LFLDRTSITEVPS--SIELLTKLQWLNLNDCRSLVRLPSS----INGLTSLKTLNLSGCF 155 (535)
Q Consensus 102 L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~l~~lp~~----i~~l~~L~~L~Ls~c~ 155 (535)
|++++|.+..+|. .++.+++|+.|++++|... .+|.. +..+++|+.|++++|.
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999988887 7888899999999988753 56654 7788999999998874
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.37 E-value=6.6e-13 Score=133.56 Aligned_cols=195 Identities=14% Similarity=0.126 Sum_probs=92.6
Q ss_pred CCCCCEEeccCCCCCccC-cccccCCCCCceeecccccCcccCc-cccCCCCCCEeccccCcC---CCc-cCccccCCCC
Q 041071 72 LECLQTLVLSGCSKIVKF-PETVISVEDLSELFLDRTSITEVPS-SIELLTKLQWLNLNDCRS---LVR-LPSSINGLTS 145 (535)
Q Consensus 72 l~~L~~L~Ls~c~~l~~~-p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~---l~~-lp~~i~~l~~ 145 (535)
+++|+.|+|.. .+..+ +..+..+++|+.+++..|.+..++. .+..+.++..+.+..... ... -...+.++.+
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 67777777766 33333 3446667777777777777665544 355555555554433110 011 1112333444
Q ss_pred Cc-eeeccCccCCCCchhhhh----ccccccEEEecCccccCCCccc-ccCCCCcEEEcCCCCCCCCCCccccccccccc
Q 041071 146 LK-TLNLSGCFKLENVPETLR----QIESLEKLDISGTAIRQPLSSI-FLMKNLKELSCRGCKGSPSSASWFLRFPINLM 219 (535)
Q Consensus 146 L~-~L~Ls~c~~l~~lp~~l~----~l~~L~~L~L~~~~i~~~~~~i-~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l 219 (535)
|+ .+.+... ..++..+. ...++..+.+.++-.......+ ..+++|+.|++.+|....
T Consensus 178 L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~-------------- 240 (329)
T 3sb4_A 178 LETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT-------------- 240 (329)
T ss_dssp CEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE--------------
T ss_pred cceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce--------------
Confidence 44 3333321 22232221 2334444444433111111111 125666666666554321
Q ss_pred cccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCC-EEeCCCCcCCCCC-hhhcCCCCCcEEeccCCc
Q 041071 220 RWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLE-ELHLSGNNFFTLP-ASIYRLSSLLGIDLKECK 297 (535)
Q Consensus 220 ~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~-~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c~ 297 (535)
.-+..|.++++|+.|+|.++ +.. .-+..|.++++|+ .+++.+ .+..++ ..+..|++|+.|++.++.
T Consensus 241 ---------I~~~aF~~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 241 ---------IPDFTFAQKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp ---------ECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSC
T ss_pred ---------ecHhhhhCCCCCCEEECCcc-cce-ehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCc
Confidence 11223555666666666665 321 2234556666666 666666 555554 355566666666665543
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=2.5e-12 Score=117.08 Aligned_cols=132 Identities=16% Similarity=0.204 Sum_probs=91.4
Q ss_pred hhcCCCccEEeccCCCCCCccCcccCCCC-CCCEEeccCCCCCccCcccccCCCCCceeecccccCcccCccc-cCCCCC
Q 041071 45 IELMSGLVSLNLKDCRNLTTLPITIGNLE-CLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSI-ELLTKL 122 (535)
Q Consensus 45 i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~-~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i-~~l~~L 122 (535)
+..+.+|+.|++++|. +..+|. +..+. +|+.|++++|... .+ ..+..+++|++|++++|.+..+|..+ +.+++|
T Consensus 15 ~~~~~~L~~L~l~~n~-l~~i~~-~~~~~~~L~~L~Ls~N~l~-~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK-IPVIEN-LGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSC-CCSCCC-GGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCC-CchhHH-hhhcCCCCCEEECCCCCCC-cc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4567778888888765 345555 44444 7888888876543 33 56677778888888888888777554 777888
Q ss_pred CEeccccCcCCCccCc--cccCCCCCceeeccCccCCCCchhh----hhccccccEEEecCccccC
Q 041071 123 QWLNLNDCRSLVRLPS--SINGLTSLKTLNLSGCFKLENVPET----LRQIESLEKLDISGTAIRQ 182 (535)
Q Consensus 123 ~~L~L~~c~~l~~lp~--~i~~l~~L~~L~Ls~c~~l~~lp~~----l~~l~~L~~L~L~~~~i~~ 182 (535)
+.|++++|.. ..+|. .+..+++|+.|++++|.. ..+|.. +..+++|+.|++++|.+.+
T Consensus 91 ~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTNNSL-VELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 8888887754 55555 567778888888887743 445553 7777888888887776653
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=1.2e-11 Score=114.33 Aligned_cols=124 Identities=24% Similarity=0.322 Sum_probs=90.6
Q ss_pred EEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecccccCcccCc-cccCCCCCCEeccccCc
Q 041071 53 SLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSITEVPS-SIELLTKLQWLNLNDCR 131 (535)
Q Consensus 53 ~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~ 131 (535)
.++++++. ++.+|..+ .++|+.|++++|. +..+|..+..+++|++|++++|.|+.++. .+..+++|+.|++++|.
T Consensus 14 ~l~~~~~~-l~~ip~~~--~~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKG-LKVLPKGI--PRDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSC-CSSCCSCC--CTTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCC-CCcCCCCC--CCCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 44444422 34444433 2456666666543 34556666667777777777777887764 58999999999999998
Q ss_pred CCCccCccccCCCCCceeeccCccCCCCch-hhhhccccccEEEecCcccc
Q 041071 132 SLVRLPSSINGLTSLKTLNLSGCFKLENVP-ETLRQIESLEKLDISGTAIR 181 (535)
Q Consensus 132 ~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i~ 181 (535)
.....|..+..+++|++|+|++|.. ..+| ..+..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCC-CeeChhhhhcCccccEEEeCCCCee
Confidence 7766677899999999999999954 4555 46889999999999999886
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.29 E-value=2.8e-11 Score=110.08 Aligned_cols=130 Identities=20% Similarity=0.176 Sum_probs=80.2
Q ss_pred CcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecccc
Q 041071 28 LQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRT 107 (535)
Q Consensus 28 L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~ 107 (535)
.+.++++++.+..+|..+ .++|+.|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 456677777777776543 356777777776544333344566777777777776443333344566777777777777
Q ss_pred cCcccCcc-ccCCCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCC
Q 041071 108 SITEVPSS-IELLTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLEN 159 (535)
Q Consensus 108 ~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~ 159 (535)
.++.++.. ++.+++|+.|++++|......+..+..+++|++|++++|.....
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 77766653 56677777777777654432233345677777777777754443
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=3.3e-11 Score=109.57 Aligned_cols=129 Identities=19% Similarity=0.181 Sum_probs=106.4
Q ss_pred CcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCcccchh-hhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccC
Q 041071 4 LKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKELPVS-IELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSG 82 (535)
Q Consensus 4 L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l~~~-i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~ 82 (535)
.+.++++++. ++.+|..+ .++|++|++++|.+..++.. ++.+++|++|++++|......+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~-l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSC-CSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCC-CccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4678888874 56677554 58999999999999988764 68899999999999875544445578899999999999
Q ss_pred CCCCccCcccccCCCCCceeecccccCcccCcc-ccCCCCCCEeccccCcCCCc
Q 041071 83 CSKIVKFPETVISVEDLSELFLDRTSITEVPSS-IELLTKLQWLNLNDCRSLVR 135 (535)
Q Consensus 83 c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~ 135 (535)
|......+..+..+++|++|++++|.++.+|.. +..+++|+.|++++|.....
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 866555555678999999999999999998876 58899999999999876543
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.28 E-value=3.2e-14 Score=132.33 Aligned_cols=148 Identities=20% Similarity=0.348 Sum_probs=95.2
Q ss_pred cCcEEEeecc--CCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeec
Q 041071 27 CLQELRVDGT--DIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFL 104 (535)
Q Consensus 27 ~L~~L~L~~~--~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L 104 (535)
.|+.+.+.+. .++++|..+..+++|++|++++|. +..+| .+..+++|+.|++++|. +..+|..+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEEC
Confidence 3444445442 455666667777777777777654 33456 56667777777777754 4466666666677777777
Q ss_pred ccccCcccCccccCCCCCCEeccccCcCCCccC--ccccCCCCCceeeccCccCCCCchh----------hhhccccccE
Q 041071 105 DRTSITEVPSSIELLTKLQWLNLNDCRSLVRLP--SSINGLTSLKTLNLSGCFKLENVPE----------TLRQIESLEK 172 (535)
Q Consensus 105 ~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp--~~i~~l~~L~~L~Ls~c~~l~~lp~----------~l~~l~~L~~ 172 (535)
++|.+..+| .++.+++|+.|++++|... .++ ..+..+++|++|++++|......|. .+..+++|+.
T Consensus 101 ~~N~l~~l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 101 SYNQIASLS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp EEEECCCHH-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred cCCcCCcCC-ccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence 777777766 5677777777777776543 222 2466777888888887754333332 3677888888
Q ss_pred EEecCcccc
Q 041071 173 LDISGTAIR 181 (535)
Q Consensus 173 L~L~~~~i~ 181 (535)
|+ ++.+.
T Consensus 179 Ld--~~~i~ 185 (198)
T 1ds9_A 179 LD--GMPVD 185 (198)
T ss_dssp EC--CGGGT
T ss_pred EC--CcccC
Confidence 76 55544
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=1e-11 Score=124.80 Aligned_cols=193 Identities=16% Similarity=0.131 Sum_probs=132.6
Q ss_pred CCCCcEEecCCCcCCC-------------------CCC-cccCC--------CCcCcEEEeeccCCcccch-hhhcCCCc
Q 041071 1 MESLKTLVLSGCSKLK-------------------KFP-DIVGG--------MECLQELRVDGTDIKELPV-SIELMSGL 51 (535)
Q Consensus 1 L~~L~~L~Ls~~~~l~-------------------~lp-~~~~~--------~~~L~~L~L~~~~l~~l~~-~i~~l~~L 51 (535)
+++|++|||++|.... .+| ..|.+ |++|+.|+|.+ .++.|+. .+..+++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 5789999999987650 122 45556 88999999988 8888876 47888999
Q ss_pred cEEeccCCCCCCccCcccCCCCCCCEEeccC-----------------CCCCc---------cCccc-------------
Q 041071 52 VSLNLKDCRNLTTLPITIGNLECLQTLVLSG-----------------CSKIV---------KFPET------------- 92 (535)
Q Consensus 52 ~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~-----------------c~~l~---------~~p~~------------- 92 (535)
+.|++.++.....-+..|..+.++..+.+.. |..++ .++..
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 9999988765544455566666666655433 11111 00000
Q ss_pred ---------------ccCCCCCceeecccccCcccCc-cccCCCCCCEeccccCcCCCccC-ccccCCCCCc-eeeccCc
Q 041071 93 ---------------VISVEDLSELFLDRTSITEVPS-SIELLTKLQWLNLNDCRSLVRLP-SSINGLTSLK-TLNLSGC 154 (535)
Q Consensus 93 ---------------l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~-~L~Ls~c 154 (535)
...+++|+.+++.+|.++.++. .+..+++|+.+++.++ +..++ .++.++++|+ .+++.+
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-
Confidence 0126788888888888888876 4778888888888875 44454 4577788888 888876
Q ss_pred cCCCCch-hhhhccccccEEEecCccccCCCc-ccccCCCCcEEEc
Q 041071 155 FKLENVP-ETLRQIESLEKLDISGTAIRQPLS-SIFLMKNLKELSC 198 (535)
Q Consensus 155 ~~l~~lp-~~l~~l~~L~~L~L~~~~i~~~~~-~i~~l~~L~~L~L 198 (535)
.+..++ ..|.++++|+.++++++.+..++. .+.++++|+.++.
T Consensus 284 -~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 284 -SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp -TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred -cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 344443 567888888888888888876664 5667788887753
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.20 E-value=2e-13 Score=126.90 Aligned_cols=148 Identities=24% Similarity=0.303 Sum_probs=113.4
Q ss_pred hhcCCCccEEeccCCCCCCccC------cccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecccccCcccCccccC
Q 041071 45 IELMSGLVSLNLKDCRNLTTLP------ITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSITEVPSSIEL 118 (535)
Q Consensus 45 i~~l~~L~~L~Ls~~~~l~~lp------~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~ 118 (535)
+.....++.++++.+......| ..+..+++|++|++++|. +..+| .+..+++|++|++++|.+..+|..+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~ 91 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLIKKIENLDAV 91 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCCcccccchhhc
Confidence 3444555555555544444444 378889999999999875 45577 888899999999999999999988888
Q ss_pred CCCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCchh--hhhccccccEEEecCccccCCCcc----------
Q 041071 119 LTKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVPE--TLRQIESLEKLDISGTAIRQPLSS---------- 186 (535)
Q Consensus 119 l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~--~l~~l~~L~~L~L~~~~i~~~~~~---------- 186 (535)
+++|+.|++++|... .+| .+..+++|++|++++|. +..++. .+..+++|+.|++++|.+...++.
T Consensus 92 ~~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 92 ADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHCSEEEEEEEECC-CHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred CCcCCEEECcCCcCC-cCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 899999999998654 466 57778899999999984 555553 688899999999999988755332
Q ss_pred -cccCCCCcEEE
Q 041071 187 -IFLMKNLKELS 197 (535)
Q Consensus 187 -i~~l~~L~~L~ 197 (535)
+..+++|+.|+
T Consensus 169 ~~~~l~~L~~Ld 180 (198)
T 1ds9_A 169 VVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCSSCSEEC
T ss_pred HHHhCCCcEEEC
Confidence 67788999886
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.12 E-value=4.8e-09 Score=108.16 Aligned_cols=240 Identities=14% Similarity=0.248 Sum_probs=158.2
Q ss_pred CCCcCcEEEeeccCCcccch-hhhcCCCccEEeccCCCCCCccCc-ccCCCCCCCEEeccCCCCCccC-cccccCCCCCc
Q 041071 24 GMECLQELRVDGTDIKELPV-SIELMSGLVSLNLKDCRNLTTLPI-TIGNLECLQTLVLSGCSKIVKF-PETVISVEDLS 100 (535)
Q Consensus 24 ~~~~L~~L~L~~~~l~~l~~-~i~~l~~L~~L~Ls~~~~l~~lp~-~l~~l~~L~~L~Ls~c~~l~~~-p~~l~~l~~L~ 100 (535)
.+..++.+.+.+ .++.|+. .+.+. +|+.+.+..+ ++.++. .|.+ .+|+.+.+.. .+..+ +..+..+.+|+
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCC
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCC
Confidence 346666666654 4555554 34443 6888888653 555543 3554 4688888875 33343 35577788888
Q ss_pred eeecccccCcccCccccCCCCCCEeccccCcCCCccC-ccccCCCCCceeeccCccCCCCchh-hhhccccccEEEecCc
Q 041071 101 ELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRLP-SSINGLTSLKTLNLSGCFKLENVPE-TLRQIESLEKLDISGT 178 (535)
Q Consensus 101 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~ 178 (535)
.+++..|.+..++...-...+|+.+.+.++ +..++ ..+.++++|+.+.+..+ +..++. .|.. .+|+.+.+. +
T Consensus 184 ~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp-~ 257 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP-N 257 (401)
T ss_dssp EEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE-T
T ss_pred eeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeC-C
Confidence 888888888888776555688888888753 44444 45677888888888764 444443 3444 688888884 3
Q ss_pred cccCC-CcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCC
Q 041071 179 AIRQP-LSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPS 257 (535)
Q Consensus 179 ~i~~~-~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~ 257 (535)
.++.+ ...+..+++|+.+.+.++..... .....-+..|.+|++|+.++|.++ +.. .-..
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~------------------~~~~I~~~aF~~c~~L~~l~l~~~-i~~-I~~~ 317 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFNDD------------------PEAMIHPYCLEGCPKLARFEIPES-IRI-LGQG 317 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCCC------------------TTCEECTTTTTTCTTCCEECCCTT-CCE-ECTT
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccCC------------------cccEECHHHhhCCccCCeEEeCCc-eEE-Ehhh
Confidence 45544 35677788999998877654311 111123446888899999999853 422 2345
Q ss_pred CCCCCCCCCEEeCCCCcCCCCCh-hhcCCCCCcEEeccCCcc
Q 041071 258 SIGDLCSLEELHLSGNNFFTLPA-SIYRLSSLLGIDLKECKM 298 (535)
Q Consensus 258 ~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~ 298 (535)
.|.++++|+.+.|..+ +..++. .+..+ +|+.|.+.++..
T Consensus 318 aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 318 LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 7788899999999654 666654 56778 999999998853
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.11 E-value=2.8e-09 Score=109.73 Aligned_cols=299 Identities=15% Similarity=0.171 Sum_probs=150.5
Q ss_pred cccCCCCcCcEEEeeccCCcccch-hhhcCCCccEEeccCCCCCCccC-cccCCCCCCCEEeccCCCCCccC--------
Q 041071 20 DIVGGMECLQELRVDGTDIKELPV-SIELMSGLVSLNLKDCRNLTTLP-ITIGNLECLQTLVLSGCSKIVKF-------- 89 (535)
Q Consensus 20 ~~~~~~~~L~~L~L~~~~l~~l~~-~i~~l~~L~~L~Ls~~~~l~~lp-~~l~~l~~L~~L~Ls~c~~l~~~-------- 89 (535)
.+|.+|.+|+.+.+.. .++.|+. .+.++.+|+.+++..+ ++.++ ..|.++.+|+.+.+... +..+
T Consensus 65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~~ 139 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKGC 139 (394)
T ss_dssp TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTC
T ss_pred HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc--eeeecceeeecc
Confidence 5677888888888864 4777755 4777888888888653 44443 34666777776665431 1111
Q ss_pred ---------------cccccCCCCCceeecccccCcccC-ccccCCCCCCEeccccCcCCCccC-ccccCCCCCceeecc
Q 041071 90 ---------------PETVISVEDLSELFLDRTSITEVP-SSIELLTKLQWLNLNDCRSLVRLP-SSINGLTSLKTLNLS 152 (535)
Q Consensus 90 ---------------p~~l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls 152 (535)
...+..+.+|+.+.+..+. ..++ ..+..+.+|+.+.+..+ +..++ ..+.++..|+.+.+.
T Consensus 140 ~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 140 DFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCC
T ss_pred cccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecC
Confidence 1223344555555554332 2222 23444555555555432 22221 233445555555443
Q ss_pred CccCCCCchhhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCC
Q 041071 153 GCFKLENVPETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPS 232 (535)
Q Consensus 153 ~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~ 232 (535)
.+ ...+........+|+.+.+......--...+..+..|+.+.+..+..............+......... ....
T Consensus 217 ~~--~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~ 291 (394)
T 4fs7_A 217 NS--LYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEK 291 (394)
T ss_dssp TT--CCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTT
T ss_pred CC--ceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee---eccc
Confidence 32 112222223334555555543221111123444556666665443221111011001111111111111 1123
Q ss_pred cccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCCh-hhcCCCCCcEEeccCCcccccCCCCCCCcce
Q 041071 233 SLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPA-SIYRLSSLLGIDLKECKMLQNLPRLPASIHW 311 (535)
Q Consensus 233 ~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~ 311 (535)
.+..+.+|+.+.+.++ +.. .-...|..+.+|+.++|..+ +..++. ++.+|++|+.+.+..+ ++.|+.
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~-I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~------- 359 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKF-IGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGA------- 359 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCE-ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECT-------
T ss_pred cccccccccccccccc-cce-echhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehH-------
Confidence 4667778888888654 211 12345777888888888643 666653 5667777777776543 333332
Q ss_pred EeccCcccccccccccccccccCCCceeeccCchhhc
Q 041071 312 ISLNGCVSLETLSDVLNLNEHQLPHLILNCVDCLKLA 348 (535)
Q Consensus 312 L~~~~C~sL~~l~~~~n~~~~~~~~l~~~c~nC~kL~ 348 (535)
=.+.+|++|+.+..+.+... . ...|. +|.+|.
T Consensus 360 ~aF~~C~~L~~i~lp~~~~~--~-~~~F~--~c~~L~ 391 (394)
T 4fs7_A 360 NAFQGCINLKKVELPKRLEQ--Y-RYDFE--DTTKFK 391 (394)
T ss_dssp TTBTTCTTCCEEEEEGGGGG--G-GGGBC--TTCEEE
T ss_pred HHhhCCCCCCEEEECCCCEE--h-hheec--CCCCCc
Confidence 14678999998887655431 1 22355 888875
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.07 E-value=5.4e-10 Score=101.42 Aligned_cols=100 Identities=17% Similarity=0.261 Sum_probs=56.9
Q ss_pred cEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcc-cccCCCCCceeecccc
Q 041071 29 QELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPE-TVISVEDLSELFLDRT 107 (535)
Q Consensus 29 ~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~-~l~~l~~L~~L~L~~~ 107 (535)
+.++++++.+.++|..+. ++|+.|+|++|......|..|.++++|++|+|++|. +..+|. .+..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC
Confidence 567777777777776553 667777777665544445556666666666666653 333332 2345555555555555
Q ss_pred cCcccCcc-ccCCCCCCEeccccCc
Q 041071 108 SITEVPSS-IELLTKLQWLNLNDCR 131 (535)
Q Consensus 108 ~i~~lp~~-i~~l~~L~~L~L~~c~ 131 (535)
.|..+|.. ++.+++|+.|++++|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccceeCHHHhccccCCCEEEeCCCC
Confidence 55555443 4445555555555443
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=5e-10 Score=101.20 Aligned_cols=101 Identities=19% Similarity=0.206 Sum_probs=55.0
Q ss_pred CcEEEeeccCCcccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecccc
Q 041071 28 LQELRVDGTDIKELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRT 107 (535)
Q Consensus 28 L~~L~L~~~~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~ 107 (535)
.++++++++.+.++|..+ .++|++|+|++|......|..|.++++|++|+|++|......+..+..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 456666666666666554 356666666665544444555666666666666665433222233445555555555555
Q ss_pred cCcccCc-cccCCCCCCEeccccC
Q 041071 108 SITEVPS-SIELLTKLQWLNLNDC 130 (535)
Q Consensus 108 ~i~~lp~-~i~~l~~L~~L~L~~c 130 (535)
.|+.++. .++.+++|+.|++++|
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCC
Confidence 5555444 2444555555555444
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.03 E-value=1.5e-09 Score=98.12 Aligned_cols=107 Identities=19% Similarity=0.135 Sum_probs=88.2
Q ss_pred CcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCccc-chhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccC
Q 041071 4 LKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKEL-PVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSG 82 (535)
Q Consensus 4 L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l-~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~ 82 (535)
.+.|+++++. ++.+|..+ .++|++|+|++|.+..+ |..+..+++|++|+|++|......+..|.++++|++|+|++
T Consensus 11 ~~~l~~s~n~-l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCC-cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 5789999975 66788766 58999999999999988 55689999999999999875554455578899999999999
Q ss_pred CCCCccCcccccCCCCCceeecccccCcccC
Q 041071 83 CSKIVKFPETVISVEDLSELFLDRTSITEVP 113 (535)
Q Consensus 83 c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp 113 (535)
|......+..+..+++|++|+|++|.+....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 7655444556899999999999999887443
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=1e-09 Score=99.56 Aligned_cols=108 Identities=18% Similarity=0.225 Sum_probs=88.5
Q ss_pred CcEEecCCCcCCCCCCcccCCCCcCcEEEeeccCCccc-chhhhcCCCccEEeccCCCCCCccCc-ccCCCCCCCEEecc
Q 041071 4 LKTLVLSGCSKLKKFPDIVGGMECLQELRVDGTDIKEL-PVSIELMSGLVSLNLKDCRNLTTLPI-TIGNLECLQTLVLS 81 (535)
Q Consensus 4 L~~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~~~l~~l-~~~i~~l~~L~~L~Ls~~~~l~~lp~-~l~~l~~L~~L~Ls 81 (535)
-+.++++++. ++.+|..+ .++|++|+|++|.+..+ |..++.+++|++|+|++|.. ..+|. .|.++++|++|+|+
T Consensus 14 ~~~l~~~~n~-l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIR-LASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCC-CCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC-CccChhHhCCcchhhEEECC
Confidence 3678999975 57888766 48999999999999988 55789999999999999864 45554 46889999999999
Q ss_pred CCCCCccCcc-cccCCCCCceeecccccCcccCccc
Q 041071 82 GCSKIVKFPE-TVISVEDLSELFLDRTSITEVPSSI 116 (535)
Q Consensus 82 ~c~~l~~~p~-~l~~l~~L~~L~L~~~~i~~lp~~i 116 (535)
+|... .+|. .+..+++|++|++++|.+...+..+
T Consensus 90 ~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 90 DNHLK-SIPRGAFDNLKSLTHIYLYNNPWDCECRDI 124 (174)
T ss_dssp SSCCC-CCCTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred CCccc-eeCHHHhccccCCCEEEeCCCCcccccccH
Confidence 97654 5554 5899999999999999998666543
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.02 E-value=3.3e-08 Score=101.82 Aligned_cols=235 Identities=9% Similarity=0.155 Sum_probs=141.1
Q ss_pred cCCCccEEeccCCCCCCccC-cccCCCCCCCEEeccCCCCCccCcc-cccCCCCCceeecccccCcccC-ccccCCCCCC
Q 041071 47 LMSGLVSLNLKDCRNLTTLP-ITIGNLECLQTLVLSGCSKIVKFPE-TVISVEDLSELFLDRTSITEVP-SSIELLTKLQ 123 (535)
Q Consensus 47 ~l~~L~~L~Ls~~~~l~~lp-~~l~~l~~L~~L~Ls~c~~l~~~p~-~l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~ 123 (535)
.+..++.+.+.+ .++.++ ..|.++ +|+.+.+..+ +..++. .+.+ .+|+.+.+.. .+..++ ..+..+++|+
T Consensus 111 ~~~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 111 ILKGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp ECSSCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred ecCCccEEEECC--ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCC
Confidence 456677777764 244443 345554 6888887653 444443 3333 4688888775 566665 3577788888
Q ss_pred EeccccCcCCCccCccccCCCCCceeeccCccCCCCch-hhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCC
Q 041071 124 WLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENVP-ETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCK 202 (535)
Q Consensus 124 ~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~ 202 (535)
.+++.++. +..++.....+.+|+.+.+..+ +..++ ..|.++++|+.+.+..+ ++.+......-.+|+.+.+.+.-
T Consensus 184 ~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~i 259 (401)
T 4fdw_A 184 KADLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNGV 259 (401)
T ss_dssp EEECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETTC
T ss_pred eeecCCCc-ceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCCc
Confidence 88887654 4455544444678888888643 44443 45777888888888764 44443332223667777763321
Q ss_pred CCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecCCCCCCC----CCCCCCCCCCCCCCEEeCCCCcCCCC
Q 041071 203 GSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGE----GAIPSSIGDLCSLEELHLSGNNFFTL 278 (535)
Q Consensus 203 ~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~----~~lp~~l~~l~~L~~L~Ls~n~l~~l 278 (535)
...-...|.++++|+.+++.++.+.. ..-...|..+++|+.++|.+ .+..+
T Consensus 260 ------------------------~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I 314 (401)
T 4fdw_A 260 ------------------------TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRIL 314 (401)
T ss_dssp ------------------------CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEE
T ss_pred ------------------------cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEE
Confidence 11123457778888888887765531 11235677788888888874 46666
Q ss_pred Ch-hhcCCCCCcEEeccCCcccccCCCCCCCcceEeccCccccccccccc
Q 041071 279 PA-SIYRLSSLLGIDLKECKMLQNLPRLPASIHWISLNGCVSLETLSDVL 327 (535)
Q Consensus 279 p~-~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~~~~C~sL~~l~~~~ 327 (535)
+. .+..|++|+.+.|..+ ++.|+. =.+.+| +|+.+....
T Consensus 315 ~~~aF~~c~~L~~l~lp~~--l~~I~~-------~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 315 GQGLLGGNRKVTQLTIPAN--VTQINF-------SAFNNT-GIKEVKVEG 354 (401)
T ss_dssp CTTTTTTCCSCCEEEECTT--CCEECT-------TSSSSS-CCCEEEECC
T ss_pred hhhhhcCCCCccEEEECcc--ccEEcH-------HhCCCC-CCCEEEEcC
Confidence 64 5667788888887554 444432 124456 666665443
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.88 E-value=9.4e-11 Score=119.81 Aligned_cols=156 Identities=17% Similarity=0.102 Sum_probs=79.8
Q ss_pred CcCcEEEeeccCCccc-----chhhh-cCCCccEEeccCCCCCCccCccc-CCCCCCCEEeccCCCCCccCccc----c-
Q 041071 26 ECLQELRVDGTDIKEL-----PVSIE-LMSGLVSLNLKDCRNLTTLPITI-GNLECLQTLVLSGCSKIVKFPET----V- 93 (535)
Q Consensus 26 ~~L~~L~L~~~~l~~l-----~~~i~-~l~~L~~L~Ls~~~~l~~lp~~l-~~l~~L~~L~Ls~c~~l~~~p~~----l- 93 (535)
++|++|+|++|.+... ...+. ...+|+.|+|++|.....-...+ ..+++|+.|+|++|.....-... +
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4555555555555422 11111 12455566665554322111111 12345566666655432221111 1
Q ss_pred cCCCCCceeecccccCcc-----cCccccCCCCCCEeccccCcCCC----ccCccccCCCCCceeeccCccCCC----Cc
Q 041071 94 ISVEDLSELFLDRTSITE-----VPSSIELLTKLQWLNLNDCRSLV----RLPSSINGLTSLKTLNLSGCFKLE----NV 160 (535)
Q Consensus 94 ~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L~Ls~c~~l~----~l 160 (535)
...++|++|+|++|.|.. +...+..+++|++|+|++|.... .++..+...++|++|+|++|.... .+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 234556666666666642 33445566667777777665332 223445556677777777775432 23
Q ss_pred hhhhhccccccEEEecCcccc
Q 041071 161 PETLRQIESLEKLDISGTAIR 181 (535)
Q Consensus 161 p~~l~~l~~L~~L~L~~~~i~ 181 (535)
...+...++|++|++++|.+.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhCCCCCEEeccCCCCC
Confidence 445556677888888888776
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.88 E-value=6.5e-08 Score=99.44 Aligned_cols=298 Identities=12% Similarity=0.116 Sum_probs=182.5
Q ss_pred CCCCcEEecCCCcCCCCCC-cccCCCCcCcEEEeeccCCcccch-hhhcCCCccEEeccCC------------CC-----
Q 041071 1 MESLKTLVLSGCSKLKKFP-DIVGGMECLQELRVDGTDIKELPV-SIELMSGLVSLNLKDC------------RN----- 61 (535)
Q Consensus 1 L~~L~~L~Ls~~~~l~~lp-~~~~~~~~L~~L~L~~~~l~~l~~-~i~~l~~L~~L~Ls~~------------~~----- 61 (535)
+.+|+.+.|..+ ++.++ .+|.+|.+|+.+++..+ ++.++. .+..+.+|+.+.+..+ ..
T Consensus 70 c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~ 146 (394)
T 4fs7_A 70 CRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITI 146 (394)
T ss_dssp CTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEEC
T ss_pred CCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccccccc
Confidence 457888998753 55554 67888999999999754 666654 4566667776665421 11
Q ss_pred ---CCcc-CcccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecccccCcccC-ccccCCCCCCEeccccCcCCCcc
Q 041071 62 ---LTTL-PITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRTSITEVP-SSIELLTKLQWLNLNDCRSLVRL 136 (535)
Q Consensus 62 ---l~~l-p~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~l 136 (535)
...+ ...|.++.+|+.+.+... ....-...+..+.+|+.+.+..+ ++.++ ..+..+..|+.+.+.... ..+
T Consensus 147 ~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~--~~i 222 (394)
T 4fs7_A 147 PEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL--YYL 222 (394)
T ss_dssp CTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC--CEE
T ss_pred CccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc--eEe
Confidence 0111 234677889999998753 22223345677889999988765 55444 357778888888776532 233
Q ss_pred CccccCCCCCceeeccCccCCCCch-hhhhccccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCccccccc
Q 041071 137 PSSINGLTSLKTLNLSGCFKLENVP-ETLRQIESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFP 215 (535)
Q Consensus 137 p~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 215 (535)
.+......+|+.+.+... ...+. ..+..+..|+.+.+..+...-....+..+..++.+......... ........
T Consensus 223 ~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~ 298 (394)
T 4fs7_A 223 GDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSS 298 (394)
T ss_dssp CTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTT
T ss_pred ehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc--cccccccc
Confidence 333444667777777543 22222 34566777777777665444333445556666666554332110 01111122
Q ss_pred cccccccCCCcccccCCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCCh-hhcCCCCCcEEecc
Q 041071 216 INLMRWSSNPVALSFPSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPA-SIYRLSSLLGIDLK 294 (535)
Q Consensus 216 l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~ 294 (535)
+..+.+..+ +...-..+|.++.+|+.++|.++ +.. .-...|.++.+|+.+++..+ +..++. ++.+|++|+.+++.
T Consensus 299 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 299 LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEE-IGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCE-ECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred ccccccccc-cceechhhhcCCCCCCEEEeCCc-ccE-EhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 333333222 22223446888999999999764 322 22467889999999999876 777765 67889999999986
Q ss_pred CCcccccCCCCCCCcceEeccCccccccc
Q 041071 295 ECKMLQNLPRLPASIHWISLNGCVSLETL 323 (535)
Q Consensus 295 ~c~~L~~lp~lp~sL~~L~~~~C~sL~~l 323 (535)
.+ ++.+ . -.+.+|++|+.+
T Consensus 375 ~~--~~~~-------~-~~F~~c~~L~~I 393 (394)
T 4fs7_A 375 KR--LEQY-------R-YDFEDTTKFKWI 393 (394)
T ss_dssp GG--GGGG-------G-GGBCTTCEEEEE
T ss_pred CC--CEEh-------h-heecCCCCCcEE
Confidence 54 2222 1 157899999875
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.77 E-value=1.5e-08 Score=102.14 Aligned_cols=101 Identities=19% Similarity=0.155 Sum_probs=53.9
Q ss_pred EEEeecc-CCcccchhhhcCCCccEEeccCCCCCCccC-cccCCCCCCCEEeccCCCCCccCcccccCCCCCceeecccc
Q 041071 30 ELRVDGT-DIKELPVSIELMSGLVSLNLKDCRNLTTLP-ITIGNLECLQTLVLSGCSKIVKFPETVISVEDLSELFLDRT 107 (535)
Q Consensus 30 ~L~L~~~-~l~~l~~~i~~l~~L~~L~Ls~~~~l~~lp-~~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L~~L~L~~~ 107 (535)
.++++++ .+..+|. +..+++|+.|+|++++.+..+| ..|.++++|+.|+|++|......|..+..+++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3455554 5666666 6666666666666422233333 44566666666666665444444445555556666666666
Q ss_pred cCcccCccccCCCCCCEeccccCc
Q 041071 108 SITEVPSSIELLTKLQWLNLNDCR 131 (535)
Q Consensus 108 ~i~~lp~~i~~l~~L~~L~L~~c~ 131 (535)
.|..+|..+.....|+.|+|.+|.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred ccceeCHHHcccCCceEEEeeCCC
Confidence 655555433222225555555443
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.77 E-value=2.1e-08 Score=101.12 Aligned_cols=103 Identities=19% Similarity=0.180 Sum_probs=85.6
Q ss_pred EEecCCCcCCCCCCcccCCCCcCcEEEeec-cCCcccch-hhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCC
Q 041071 6 TLVLSGCSKLKKFPDIVGGMECLQELRVDG-TDIKELPV-SIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGC 83 (535)
Q Consensus 6 ~L~Ls~~~~l~~lp~~~~~~~~L~~L~L~~-~~l~~l~~-~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c 83 (535)
.++++++..+..+|. +..+++|++|+|++ |.+..++. .++.+++|+.|+|++|......|..|.++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 568888645778999 88999999999997 99999884 6899999999999998766666777899999999999997
Q ss_pred CCCccCccc-ccCCCCCceeecccccCcc
Q 041071 84 SKIVKFPET-VISVEDLSELFLDRTSITE 111 (535)
Q Consensus 84 ~~l~~~p~~-l~~l~~L~~L~L~~~~i~~ 111 (535)
.. ..+|.. +..+. |+.|+|.+|.+..
T Consensus 91 ~l-~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 AL-ESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CC-SCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred cc-ceeCHHHcccCC-ceEEEeeCCCccC
Confidence 54 455554 44444 9999999999874
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.76 E-value=6.4e-10 Score=113.60 Aligned_cols=158 Identities=17% Similarity=0.099 Sum_probs=114.8
Q ss_pred CCCccEEeccCCCCCCccCcc----cC-CCCCCCEEeccCCCCCcc-CcccccCCCCCceeecccccCcccC-----ccc
Q 041071 48 MSGLVSLNLKDCRNLTTLPIT----IG-NLECLQTLVLSGCSKIVK-FPETVISVEDLSELFLDRTSITEVP-----SSI 116 (535)
Q Consensus 48 l~~L~~L~Ls~~~~l~~lp~~----l~-~l~~L~~L~Ls~c~~l~~-~p~~l~~l~~L~~L~L~~~~i~~lp-----~~i 116 (535)
+++|+.|++++|.....-... +. ...+|+.|+|++|..... .......+.+|++|+|++|.+.... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 578999999998754322222 22 237999999999875433 2223345678999999999997432 223
Q ss_pred -cCCCCCCEeccccCcCCC----ccCccccCCCCCceeeccCccCCC----CchhhhhccccccEEEecCccccC-----
Q 041071 117 -ELLTKLQWLNLNDCRSLV----RLPSSINGLTSLKTLNLSGCFKLE----NVPETLRQIESLEKLDISGTAIRQ----- 182 (535)
Q Consensus 117 -~~l~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~L~~~~i~~----- 182 (535)
...++|+.|+|++|.... .++..+..+++|++|+|++|.... .++..+...++|++|++++|.++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 357899999999997533 344556778999999999996432 345667788899999999999984
Q ss_pred CCcccccCCCCcEEEcCCCCCCC
Q 041071 183 PLSSIFLMKNLKELSCRGCKGSP 205 (535)
Q Consensus 183 ~~~~i~~l~~L~~L~L~~~~~~~ 205 (535)
+...+...++|++|++++|....
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 33455677999999999998543
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.63 E-value=1.8e-08 Score=102.17 Aligned_cols=179 Identities=14% Similarity=0.202 Sum_probs=116.4
Q ss_pred CcccCCCCcCcEEEeeccCCc----------ccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCcc
Q 041071 19 PDIVGGMECLQELRVDGTDIK----------ELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGCSKIVK 88 (535)
Q Consensus 19 p~~~~~~~~L~~L~L~~~~l~----------~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~ 88 (535)
......+++|+.|.+.+.... .+...+..+++|+.|++++|..+ .++. +. +++|++|+|..|.....
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDS 208 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChH
Confidence 344556789999988654321 24455677899999999987433 3444 44 88999999988764433
Q ss_pred Cccccc--CCCCCceeeccc--cc------CcccCccc--cCCCCCCEeccccCcCCCccCccc---cCCCCCceeeccC
Q 041071 89 FPETVI--SVEDLSELFLDR--TS------ITEVPSSI--ELLTKLQWLNLNDCRSLVRLPSSI---NGLTSLKTLNLSG 153 (535)
Q Consensus 89 ~p~~l~--~l~~L~~L~L~~--~~------i~~lp~~i--~~l~~L~~L~L~~c~~l~~lp~~i---~~l~~L~~L~Ls~ 153 (535)
....+. .+++|++|+|+. +. +..+...+ ..+++|+.|++.+|......+..+ ..+++|++|+|+.
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 223333 689999999853 11 22222223 358999999999887653322222 2478999999998
Q ss_pred ccCCC----CchhhhhccccccEEEecCccccCC-Cccccc-CCCCcEEEcCCCC
Q 041071 154 CFKLE----NVPETLRQIESLEKLDISGTAIRQP-LSSIFL-MKNLKELSCRGCK 202 (535)
Q Consensus 154 c~~l~----~lp~~l~~l~~L~~L~L~~~~i~~~-~~~i~~-l~~L~~L~L~~~~ 202 (535)
|.... .++..+..+++|+.|+++.|.+... ...+.. + ...+++++..
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 75333 2445556789999999999987732 222222 2 4568888776
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.61 E-value=1.9e-06 Score=88.37 Aligned_cols=84 Identities=13% Similarity=0.231 Sum_probs=45.4
Q ss_pred cccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCCh-hhcCCCCCcEEeccCCcccccCCCCCCCcce
Q 041071 233 SLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPA-SIYRLSSLLGIDLKECKMLQNLPRLPASIHW 311 (535)
Q Consensus 233 ~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~ 311 (535)
.+.++++|+.+.+... +.. .-...|.++.+|+.++|..+ ++.+.. ++.+|.+|+.+.|... ++.|++
T Consensus 283 aF~~c~~L~~i~l~~~-i~~-I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~------- 350 (394)
T 4gt6_A 283 AFMNCPALQDIEFSSR-ITE-LPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--VTKIPE------- 350 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--CCBCCG-------
T ss_pred ccccccccccccCCCc-ccc-cCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--cCEEhH-------
Confidence 3556667777776532 211 11235666777777777643 555543 4556667776666432 333322
Q ss_pred EeccCcccccccccccc
Q 041071 312 ISLNGCVSLETLSDVLN 328 (535)
Q Consensus 312 L~~~~C~sL~~l~~~~n 328 (535)
-.+.+|++|+++..+.+
T Consensus 351 ~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGS 367 (394)
T ss_dssp GGGTTCTTCCEEEESSC
T ss_pred hHhhCCCCCCEEEECCc
Confidence 13556777776655443
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.60 E-value=4.1e-08 Score=99.53 Aligned_cols=176 Identities=17% Similarity=0.170 Sum_probs=114.9
Q ss_pred CCcCcEEEeeccCCc---------ccchhhhcCCCccEEeccCCCCC---------CccCcccCCCCCCCEEeccCCCCC
Q 041071 25 MECLQELRVDGTDIK---------ELPVSIELMSGLVSLNLKDCRNL---------TTLPITIGNLECLQTLVLSGCSKI 86 (535)
Q Consensus 25 ~~~L~~L~L~~~~l~---------~l~~~i~~l~~L~~L~Ls~~~~l---------~~lp~~l~~l~~L~~L~Ls~c~~l 86 (535)
...++.|.+...... .+..++..+++|+.|.+...... ..+...+..+++|+.|.|++|..+
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 345667776643322 23445667899999999654221 123334566899999999998443
Q ss_pred ccCcccccCCCCCceeecccccCcc-cCccc--cCCCCCCEeccccCcC-------CCccCccc--cCCCCCceeeccCc
Q 041071 87 VKFPETVISVEDLSELFLDRTSITE-VPSSI--ELLTKLQWLNLNDCRS-------LVRLPSSI--NGLTSLKTLNLSGC 154 (535)
Q Consensus 87 ~~~p~~l~~l~~L~~L~L~~~~i~~-lp~~i--~~l~~L~~L~L~~c~~-------l~~lp~~i--~~l~~L~~L~Ls~c 154 (535)
.++. + .+++|++|++..+.+.. ....+ ..+++|+.|+|..+.. ...+...+ ..+++|++|++.+|
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 2333 3 38899999998887762 11223 3789999999853211 11122222 24789999999988
Q ss_pred cCCCCchhhhh---ccccccEEEecCccccC-----CCcccccCCCCcEEEcCCCCC
Q 041071 155 FKLENVPETLR---QIESLEKLDISGTAIRQ-----PLSSIFLMKNLKELSCRGCKG 203 (535)
Q Consensus 155 ~~l~~lp~~l~---~l~~L~~L~L~~~~i~~-----~~~~i~~l~~L~~L~L~~~~~ 203 (535)
......+..+. .+++|++|+++.|.+.. ++..+..+++|+.|++++|..
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 65443333333 57899999999998874 344556789999999988863
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.56 E-value=5.7e-06 Score=84.82 Aligned_cols=102 Identities=18% Similarity=0.326 Sum_probs=70.9
Q ss_pred CCcccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCCh-hhcCCCCCcEEeccCCcccccCCCCCCCc
Q 041071 231 PSSLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPA-SIYRLSSLLGIDLKECKMLQNLPRLPASI 309 (535)
Q Consensus 231 p~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~lp~sL 309 (535)
...|.++..|+.+.+.+.... .-...+..+++|+.+.+. +.+..++. .+..+.+|+.+.|.+. ++.|+.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~--I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~----- 327 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS--IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILD----- 327 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE--ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECT-----
T ss_pred cceeeecccccEEecccccce--ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehH-----
Confidence 345778899999999776432 123567788999999996 45677765 5677889999988543 333332
Q ss_pred ceEeccCcccccccccccccccccCCCceeeccCchhhc
Q 041071 310 HWISLNGCVSLETLSDVLNLNEHQLPHLILNCVDCLKLA 348 (535)
Q Consensus 310 ~~L~~~~C~sL~~l~~~~n~~~~~~~~l~~~c~nC~kL~ 348 (535)
=.+.+|.+|+++..+.+.. .+..-.|. +|.+|.
T Consensus 328 --~aF~~C~~L~~i~ip~sv~--~I~~~aF~--~C~~L~ 360 (394)
T 4gt6_A 328 --DAFAGCEQLERIAIPSSVT--KIPESAFS--NCTALN 360 (394)
T ss_dssp --TTTTTCTTCCEEEECTTCC--BCCGGGGT--TCTTCC
T ss_pred --hHhhCCCCCCEEEECcccC--EEhHhHhh--CCCCCC
Confidence 1467999999988765432 34455577 898886
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.38 E-value=4.8e-05 Score=77.29 Aligned_cols=285 Identities=14% Similarity=0.152 Sum_probs=123.0
Q ss_pred cCCCCcCcEEEeeccCCcccch-hhhcCCCccEEeccCCCCCCccCc-ccCCCCCCCEEeccCCCCCccCcccccCCCCC
Q 041071 22 VGGMECLQELRVDGTDIKELPV-SIELMSGLVSLNLKDCRNLTTLPI-TIGNLECLQTLVLSGCSKIVKFPETVISVEDL 99 (535)
Q Consensus 22 ~~~~~~L~~L~L~~~~l~~l~~-~i~~l~~L~~L~Ls~~~~l~~lp~-~l~~l~~L~~L~Ls~c~~l~~~p~~l~~l~~L 99 (535)
+....+|+.+.+.. .++.|+. .+.++.+|+.+++..+ ++.++. .|.++ +|+.+.+.. .+..++.......+|
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~~~L 115 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQGTDL 115 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTTCCC
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCc--eeeEeccceeccCCc
Confidence 44567788877753 4666654 4677788888888642 444443 35544 566666643 233443333333466
Q ss_pred ceeecccccCcccCccccCCCCCCEeccccCcCCCcc-CccccCCCCCceeeccCccCC------------CCchhhhhc
Q 041071 100 SELFLDRTSITEVPSSIELLTKLQWLNLNDCRSLVRL-PSSINGLTSLKTLNLSGCFKL------------ENVPETLRQ 166 (535)
Q Consensus 100 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l------------~~lp~~l~~ 166 (535)
+.+.+..+ +..+....-...+|+.+.+... +..+ ...+..+..++.+.+...... ......+..
T Consensus 116 ~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA 192 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred ccccCCCc-cccccccccccceeeeeeccce--eeccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence 66666543 2222222111123333333221 1111 122334444544444332111 001111112
Q ss_pred cccccEEEecCccccCCCcccccCCCCcEEEcCCCCCCCCCCccccccccccccccCCCcccccCCcccCCCCCCEEecC
Q 041071 167 IESLEKLDISGTAIRQPLSSIFLMKNLKELSCRGCKGSPSSASWFLRFPINLMRWSSNPVALSFPSSLSGLCSLTKLDIS 246 (535)
Q Consensus 167 l~~L~~L~L~~~~i~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~Ls 246 (535)
...+..+.+...........+..+.+|+.+.+...-.............+..+.+..+ +...-...+.++.+|+.+.+.
T Consensus 193 ~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~ 271 (379)
T 4h09_A 193 AKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFY 271 (379)
T ss_dssp TCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred cccccccccccceeEEeecccccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccc
Confidence 2222232222211111112222333444444322211000000000111111111111 111122345666777777775
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCCh-hhcCCCCCcEEeccCCcccccCCCCCCCcceEeccCccccccccc
Q 041071 247 DCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPA-SIYRLSSLLGIDLKECKMLQNLPRLPASIHWISLNGCVSLETLSD 325 (535)
Q Consensus 247 ~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~~~~C~sL~~l~~ 325 (535)
.. +.. .-...|..+++|+.+.+.++.+..++. .+.+|++|+.+.|... ++.|+. -.+.+|++|+++..
T Consensus 272 ~~-i~~-i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~-------~aF~~C~~L~~i~i 340 (379)
T 4h09_A 272 AK-VKT-VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQV-------YAFKNCKALSTISY 340 (379)
T ss_dssp CC-CSE-ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECT-------TTTTTCTTCCCCCC
T ss_pred cc-cee-ccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHH-------HHhhCCCCCCEEEE
Confidence 44 211 112356667777777777777776654 5566777777766422 222221 02446666666655
Q ss_pred cc
Q 041071 326 VL 327 (535)
Q Consensus 326 ~~ 327 (535)
+.
T Consensus 341 p~ 342 (379)
T 4h09_A 341 PK 342 (379)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.35 E-value=5.5e-05 Score=76.81 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=28.0
Q ss_pred cccCCCCCCEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCCh-hhcCCCCCcEEe
Q 041071 233 SLSGLCSLTKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPA-SIYRLSSLLGID 292 (535)
Q Consensus 233 ~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~ 292 (535)
.+.++.+|+.+.+.++.+.. .-...|.++.+|+.+.|..+ ++.+.. ++.+|++|+.+.
T Consensus 281 aF~~c~~L~~i~l~~~~i~~-I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIET-LEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred ccccccccccccccccccce-ehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence 45556666666665554422 11234555666666666432 444432 333444444333
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.90 E-value=3.6e-06 Score=76.76 Aligned_cols=113 Identities=12% Similarity=0.046 Sum_probs=69.4
Q ss_pred hhhhcCCCccEEeccCC-CCCC----ccCcccCCCCCCCEEeccCCCCCcc----CcccccCCCCCceeecccccCcc--
Q 041071 43 VSIELMSGLVSLNLKDC-RNLT----TLPITIGNLECLQTLVLSGCSKIVK----FPETVISVEDLSELFLDRTSITE-- 111 (535)
Q Consensus 43 ~~i~~l~~L~~L~Ls~~-~~l~----~lp~~l~~l~~L~~L~Ls~c~~l~~----~p~~l~~l~~L~~L~L~~~~i~~-- 111 (535)
..+...+.|+.|+|++| .... .+...+...++|++|+|++|..-.. +...+...++|++|+|++|.|..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34455666777777665 3221 2333344566777777777654321 33444455677777777777763
Q ss_pred ---cCccccCCCCCCEecc--ccCcCCCc----cCccccCCCCCceeeccCcc
Q 041071 112 ---VPSSIELLTKLQWLNL--NDCRSLVR----LPSSINGLTSLKTLNLSGCF 155 (535)
Q Consensus 112 ---lp~~i~~l~~L~~L~L--~~c~~l~~----lp~~i~~l~~L~~L~Ls~c~ 155 (535)
+...+...+.|++|+| ++|..... +...+...++|++|++++|.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4556777778888888 66654332 33445556788999988874
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.90 E-value=4.8e-06 Score=75.88 Aligned_cols=112 Identities=17% Similarity=0.099 Sum_probs=59.5
Q ss_pred cCCCCCCCEEeccCC-CCCc----cCcccccCCCCCceeecccccCcc-----cCccccCCCCCCEeccccCcCCCc---
Q 041071 69 IGNLECLQTLVLSGC-SKIV----KFPETVISVEDLSELFLDRTSITE-----VPSSIELLTKLQWLNLNDCRSLVR--- 135 (535)
Q Consensus 69 l~~l~~L~~L~Ls~c-~~l~----~~p~~l~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~l~~--- 135 (535)
+...++|++|+|++| ..-. .+...+...++|++|+|++|.|.. +...+...+.|++|+|++|.....
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 455777888888877 3321 134445556667777777776652 333444455666666666553321
Q ss_pred -cCccccCCCCCceeec--cCccCCCC----chhhhhccccccEEEecCccc
Q 041071 136 -LPSSINGLTSLKTLNL--SGCFKLEN----VPETLRQIESLEKLDISGTAI 180 (535)
Q Consensus 136 -lp~~i~~l~~L~~L~L--s~c~~l~~----lp~~l~~l~~L~~L~L~~~~i 180 (535)
+...+...++|++|+| ++|..... +.+.+...++|++|++++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2333444555666666 44433221 233344445555555555544
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.76 E-value=2.5e-05 Score=70.10 Aligned_cols=87 Identities=21% Similarity=0.305 Sum_probs=54.2
Q ss_pred CCCCEeccccCcCCCccCccccCCCCCceeeccCccCCCCc-hhhhhcc----ccccEEEecCcc-ccC-CCcccccCCC
Q 041071 120 TKLQWLNLNDCRSLVRLPSSINGLTSLKTLNLSGCFKLENV-PETLRQI----ESLEKLDISGTA-IRQ-PLSSIFLMKN 192 (535)
Q Consensus 120 ~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l-p~~l~~l----~~L~~L~L~~~~-i~~-~~~~i~~l~~ 192 (535)
.+|+.|++++|.....--..+..+++|++|+|++|..++.- -..+..+ ++|++|++++|. +++ -...+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 35677777776633322234566777777777777655431 2334442 467888888774 552 2345667888
Q ss_pred CcEEEcCCCCCCCC
Q 041071 193 LKELSCRGCKGSPS 206 (535)
Q Consensus 193 L~~L~L~~~~~~~~ 206 (535)
|+.|++++|...++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 88888888887665
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.70 E-value=2.1e-05 Score=75.73 Aligned_cols=79 Identities=19% Similarity=0.156 Sum_probs=58.9
Q ss_pred CCCCcCcEEEeeccCCcccc---hhhhcCCCccEEeccCCCCCCccCcccCCCC--CCCEEeccCCCCCccCc-------
Q 041071 23 GGMECLQELRVDGTDIKELP---VSIELMSGLVSLNLKDCRNLTTLPITIGNLE--CLQTLVLSGCSKIVKFP------- 90 (535)
Q Consensus 23 ~~~~~L~~L~L~~~~l~~l~---~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~--~L~~L~Ls~c~~l~~~p------- 90 (535)
.++++|+.|+|++|.|..++ ..+..+++|+.|+|++|.... +. .+..+. +|+.|+|++|.....+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-GG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-ch-hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 46789999999998887654 556789999999999876443 32 244444 89999999988766555
Q ss_pred ccccCCCCCceee
Q 041071 91 ETVISVEDLSELF 103 (535)
Q Consensus 91 ~~l~~l~~L~~L~ 103 (535)
..+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 3467788898886
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.63 E-value=3e-05 Score=69.59 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=25.6
Q ss_pred CCCCEeccccCcCCCcc-CccccCCCCCceeeccCccCCCCc
Q 041071 120 TKLQWLNLNDCRSLVRL-PSSINGLTSLKTLNLSGCFKLENV 160 (535)
Q Consensus 120 ~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~l 160 (535)
++|++|+|++|..++.- -..+..+++|++|++++|..++..
T Consensus 114 ~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred CCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 35777777777654421 123456778888888888766553
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.40 E-value=0.00011 Score=70.84 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=54.9
Q ss_pred cCCCCCceeecccccCcccC---ccccCCCCCCEeccccCcCCCccCccccCCC--CCceeeccCccCCCCch-------
Q 041071 94 ISVEDLSELFLDRTSITEVP---SSIELLTKLQWLNLNDCRSLVRLPSSINGLT--SLKTLNLSGCFKLENVP------- 161 (535)
Q Consensus 94 ~~l~~L~~L~L~~~~i~~lp---~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~--~L~~L~Ls~c~~l~~lp------- 161 (535)
.++++|+.|+|++|.|..++ ..++.+++|+.|+|++|..... ..+..+. +|++|+|++|.....+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 45778888888888877543 5566788888888888765432 2233333 88889998887655444
Q ss_pred hhhhccccccEEEe
Q 041071 162 ETLRQIESLEKLDI 175 (535)
Q Consensus 162 ~~l~~l~~L~~L~L 175 (535)
..+..+++|+.|+-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 34677888888763
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.38 E-value=0.0093 Score=54.28 Aligned_cols=107 Identities=12% Similarity=0.088 Sum_probs=54.4
Q ss_pred CCCcCcEEEeecc-CCc-----ccchhhhcCCCccEEeccCCCCCC----ccCcccCCCCCCCEEeccCCCCCcc----C
Q 041071 24 GMECLQELRVDGT-DIK-----ELPVSIELMSGLVSLNLKDCRNLT----TLPITIGNLECLQTLVLSGCSKIVK----F 89 (535)
Q Consensus 24 ~~~~L~~L~L~~~-~l~-----~l~~~i~~l~~L~~L~Ls~~~~l~----~lp~~l~~l~~L~~L~Ls~c~~l~~----~ 89 (535)
+-+.|++|+|+++ .|. .+-..+..-..|+.|+|++|..-. .+-..+..-+.|+.|+|++|..-.. +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4456666666653 443 233445555666666666654332 1122222345666666666554321 2
Q ss_pred cccccCCCCCceeecccc---cCc-----ccCccccCCCCCCEeccccC
Q 041071 90 PETVISVEDLSELFLDRT---SIT-----EVPSSIELLTKLQWLNLNDC 130 (535)
Q Consensus 90 p~~l~~l~~L~~L~L~~~---~i~-----~lp~~i~~l~~L~~L~L~~c 130 (535)
.+.+..-..|++|+|+++ .+. .+-..+..-+.|+.|+++.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 233344445666666643 222 23334555567777777654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.33 E-value=0.011 Score=53.91 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=19.9
Q ss_pred hhcCCCccEEeccCCCCCC-----ccCcccCCCCCCCEEeccCCC
Q 041071 45 IELMSGLVSLNLKDCRNLT-----TLPITIGNLECLQTLVLSGCS 84 (535)
Q Consensus 45 i~~l~~L~~L~Ls~~~~l~-----~lp~~l~~l~~L~~L~Ls~c~ 84 (535)
+.+-+.|+.|+|+++..+. .+-..+..-..|+.|+|++|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ 81 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA 81 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC
Confidence 3445667777776542222 122223334556666666654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.88 E-value=0.06 Score=45.38 Aligned_cols=56 Identities=27% Similarity=0.344 Sum_probs=37.3
Q ss_pred CEEecCCCCCCCCCCCCCCCCCCCCCEEeCCCCcCCCCChh-hcCCCCCcEEeccCCcc
Q 041071 241 TKLDISDCDLGEGAIPSSIGDLCSLEELHLSGNNFFTLPAS-IYRLSSLLGIDLKECKM 298 (535)
Q Consensus 241 ~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~ 298 (535)
..++.++..++...+|..+ -++|+.|+|++|+|..+|.. +..+++|+.|+|.+|+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 3566666666522366443 24678888888888887764 46677888888887754
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.47 E-value=0.11 Score=43.74 Aligned_cols=52 Identities=17% Similarity=0.153 Sum_probs=23.4
Q ss_pred EEEeeccCCc--ccchhhhcCCCccEEeccCCCCCCccCcccCCCCCCCEEeccCC
Q 041071 30 ELRVDGTDIK--ELPVSIELMSGLVSLNLKDCRNLTTLPITIGNLECLQTLVLSGC 83 (535)
Q Consensus 30 ~L~L~~~~l~--~l~~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~Ls~c 83 (535)
.++.+++.++ .+|..+ ..+|+.|+|++|.....-+..|..+++|+.|+|.+|
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4445555554 555332 234555555554322222223444555555555544
No 165
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=38.24 E-value=6.8 Score=21.83 Aligned_cols=11 Identities=55% Similarity=0.845 Sum_probs=7.8
Q ss_pred CCCCCCccccc
Q 041071 521 NDDEEPQPKRF 531 (535)
Q Consensus 521 ~~~~~~~~~~~ 531 (535)
++|||||-||-
T Consensus 15 dedeepprkrk 25 (28)
T 3ukw_C 15 DEDEEPPRKRK 25 (28)
T ss_dssp CGGGSCCSSCC
T ss_pred ccccCcchhhh
Confidence 55688887774
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=32.13 E-value=25 Score=27.55 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=14.2
Q ss_pred ccCcccccccccccccccccCCCceeeccCchhhc
Q 041071 314 LNGCVSLETLSDVLNLNEHQLPHLILNCVDCLKLA 348 (535)
Q Consensus 314 ~~~C~sL~~l~~~~n~~~~~~~~l~~~c~nC~kL~ 348 (535)
+.+|++|+++..+.+.. .+..-.|. +|.+|.
T Consensus 16 F~~c~~L~~i~iP~~v~--~Ig~~aF~--~C~~L~ 46 (100)
T 2lz0_A 16 FAGNTVIREITVQPNIG--LLYDGMFS--GCTALE 46 (100)
T ss_dssp TTTCTTCCCEEECTTSS--CCCTTSST--TCTTCC
T ss_pred hcCCCCCcEEEcCCchh--eEcHHHHh--ccCCcc
Confidence 44555555555443321 22233344 555554
Done!